Query 010649
Match_columns 505
No_of_seqs 394 out of 3300
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.9E-70 6.5E-75 560.1 46.0 389 86-477 43-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 5.2E-64 1.8E-68 511.4 46.0 396 86-482 2-414 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.3E-60 1.1E-64 482.3 37.0 374 93-473 31-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 5.5E-59 1.9E-63 473.8 34.3 380 92-477 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 4.9E-58 1.7E-62 464.8 38.4 374 95-476 17-390 (400)
6 1xti_A Probable ATP-dependent 100.0 2.2E-57 7.4E-62 458.5 39.0 369 99-473 8-380 (391)
7 3i5x_A ATP-dependent RNA helic 100.0 2.8E-57 9.7E-62 479.2 35.3 357 106-463 79-461 (563)
8 1hv8_A Putative ATP-dependent 100.0 6.2E-56 2.1E-60 443.7 42.0 355 98-466 5-360 (367)
9 1fuu_A Yeast initiation factor 100.0 5.5E-58 1.9E-62 463.3 24.5 377 93-477 15-392 (394)
10 3fht_A ATP-dependent RNA helic 100.0 1.6E-55 5.6E-60 447.8 40.8 368 94-471 20-400 (412)
11 3pey_A ATP-dependent RNA helic 100.0 2.9E-55 9.9E-60 443.3 41.1 356 97-463 3-369 (395)
12 3sqw_A ATP-dependent RNA helic 100.0 1.1E-55 3.9E-60 467.4 36.5 365 97-462 15-409 (579)
13 3fmp_B ATP-dependent RNA helic 100.0 6.2E-56 2.1E-60 459.6 22.3 373 89-471 79-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 4.4E-53 1.5E-57 418.1 38.7 335 106-464 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 2.8E-52 9.4E-57 438.1 34.9 341 102-460 24-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.4E-53 4.8E-58 443.7 20.1 371 92-472 112-492 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 8.6E-51 3E-55 422.7 34.3 341 99-461 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.6E-50 9E-55 409.8 29.5 327 109-464 9-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-48 7.5E-53 410.8 26.1 331 118-453 4-510 (556)
20 2ykg_A Probable ATP-dependent 100.0 1.9E-48 6.5E-53 422.0 24.5 341 112-457 4-522 (696)
21 1tf5_A Preprotein translocase 100.0 5.7E-48 1.9E-52 405.5 26.2 375 52-453 18-547 (844)
22 2va8_A SSO2462, SKI2-type heli 100.0 6.6E-47 2.3E-51 410.2 34.5 338 98-453 7-410 (715)
23 2zj8_A DNA helicase, putative 100.0 1.3E-47 4.4E-52 415.6 27.1 332 100-452 2-388 (720)
24 3tbk_A RIG-I helicase domain; 100.0 1.9E-47 6.5E-52 403.5 25.7 334 120-459 3-515 (555)
25 3l9o_A ATP-dependent RNA helic 100.0 5E-47 1.7E-51 422.2 29.7 330 99-451 162-597 (1108)
26 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-47 6.3E-52 413.3 24.9 332 100-453 2-390 (702)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-46 6E-51 410.6 28.5 333 116-453 243-751 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 5E-45 1.7E-49 378.3 34.7 323 121-453 9-477 (494)
29 4ddu_A Reverse gyrase; topoiso 100.0 9.9E-46 3.4E-50 411.6 30.2 321 117-465 75-504 (1104)
30 2xgj_A ATP-dependent RNA helic 100.0 2.3E-44 7.9E-49 397.5 37.8 316 121-459 86-508 (1010)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-45 6.2E-50 406.7 26.2 333 116-453 243-751 (936)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-45 6.5E-50 409.8 21.0 320 116-465 53-468 (1054)
33 4gl2_A Interferon-induced heli 100.0 2.1E-45 7.2E-50 398.4 17.9 325 120-450 6-517 (699)
34 2fsf_A Preprotein translocase 100.0 2.4E-44 8.3E-49 376.9 25.0 361 68-453 25-585 (853)
35 4f92_B U5 small nuclear ribonu 100.0 1.5E-44 5.2E-49 415.4 24.4 345 106-459 66-481 (1724)
36 1nkt_A Preprotein translocase 100.0 6.9E-43 2.4E-47 366.1 31.6 325 116-455 107-621 (922)
37 4a4z_A Antiviral helicase SKI2 100.0 1.9E-42 6.5E-47 382.3 33.3 306 121-449 39-490 (997)
38 1gm5_A RECG; helicase, replica 100.0 2.6E-43 9E-48 377.5 25.1 333 108-466 356-711 (780)
39 2eyq_A TRCF, transcription-rep 100.0 5.2E-42 1.8E-46 384.2 34.9 324 104-451 586-922 (1151)
40 4f92_B U5 small nuclear ribonu 100.0 3E-42 1E-46 396.4 32.7 343 106-460 911-1317(1724)
41 3fe2_A Probable ATP-dependent 100.0 1.1E-41 3.8E-46 320.2 27.0 239 73-311 3-241 (242)
42 2oca_A DAR protein, ATP-depend 100.0 7.7E-43 2.6E-47 364.3 21.1 312 120-449 112-453 (510)
43 2whx_A Serine protease/ntpase/ 100.0 3.9E-43 1.3E-47 369.8 11.4 323 104-472 155-502 (618)
44 2jlq_A Serine protease subunit 100.0 5.5E-42 1.9E-46 350.7 15.5 311 118-474 1-337 (451)
45 2fwr_A DNA repair protein RAD2 100.0 1.4E-41 4.8E-46 351.4 16.5 294 120-451 92-454 (472)
46 1yks_A Genome polyprotein [con 100.0 2.1E-42 7.3E-47 352.2 4.3 287 132-472 4-323 (440)
47 2xau_A PRE-mRNA-splicing facto 100.0 6.8E-40 2.3E-44 353.5 22.8 337 95-453 68-445 (773)
48 2wv9_A Flavivirin protease NS2 100.0 5.3E-41 1.8E-45 355.6 12.3 307 114-465 203-550 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 2.3E-40 7.9E-45 345.4 13.7 279 120-454 216-517 (666)
50 3h1t_A Type I site-specific re 100.0 9.7E-39 3.3E-43 338.9 20.2 305 120-440 177-545 (590)
51 2z83_A Helicase/nucleoside tri 100.0 2.6E-39 8.9E-44 331.4 14.2 273 130-451 15-313 (459)
52 2v6i_A RNA helicase; membrane, 100.0 5.1E-38 1.8E-42 319.2 20.6 269 135-448 1-288 (431)
53 3iuy_A Probable ATP-dependent 100.0 2.5E-37 8.4E-42 287.9 23.1 215 91-306 11-227 (228)
54 1wrb_A DJVLGB; RNA helicase, D 100.0 2.4E-37 8.1E-42 292.8 22.7 225 87-311 9-243 (253)
55 3dmq_A RNA polymerase-associat 100.0 2.1E-37 7E-42 342.8 23.5 335 120-466 152-628 (968)
56 1z63_A Helicase of the SNF2/RA 100.0 5.7E-37 2E-41 319.2 24.7 327 121-467 37-467 (500)
57 3bor_A Human initiation factor 100.0 1.7E-36 5.9E-41 283.8 22.8 213 91-308 22-235 (237)
58 3dkp_A Probable ATP-dependent 100.0 1.2E-36 4E-41 286.6 21.6 230 77-310 3-243 (245)
59 3ber_A Probable ATP-dependent 100.0 3.9E-36 1.3E-40 283.1 23.2 207 96-307 40-247 (249)
60 2oxc_A Probable ATP-dependent 100.0 5.9E-36 2E-40 278.8 23.2 210 91-306 16-227 (230)
61 1vec_A ATP-dependent RNA helic 100.0 1.3E-35 4.5E-40 271.8 24.9 202 99-305 3-205 (206)
62 2pl3_A Probable ATP-dependent 100.0 2E-35 6.8E-40 276.5 26.4 212 95-308 21-233 (236)
63 1q0u_A Bstdead; DEAD protein, 100.0 2.6E-36 8.9E-41 279.2 19.9 208 97-309 2-213 (219)
64 1qde_A EIF4A, translation init 100.0 1E-35 3.5E-40 276.2 23.8 213 91-309 6-218 (224)
65 3fmo_B ATP-dependent RNA helic 100.0 1.3E-35 4.5E-40 286.8 24.3 214 87-308 77-298 (300)
66 2gxq_A Heat resistant RNA depe 100.0 3.6E-35 1.2E-39 269.0 26.0 204 100-307 2-205 (207)
67 3rc3_A ATP-dependent RNA helic 100.0 2.5E-35 8.6E-40 311.2 27.2 275 131-450 150-444 (677)
68 3mwy_W Chromo domain-containin 100.0 3.4E-35 1.2E-39 320.6 28.3 390 60-468 178-699 (800)
69 1z3i_X Similar to RAD54-like; 100.0 3E-34 1E-38 305.6 33.6 323 121-451 55-528 (644)
70 3ly5_A ATP-dependent RNA helic 100.0 4.8E-35 1.6E-39 277.8 23.6 205 99-304 52-259 (262)
71 3jux_A Protein translocase sub 100.0 2.1E-33 7.3E-38 288.3 34.4 318 121-454 75-590 (822)
72 1t6n_A Probable ATP-dependent 100.0 9.3E-35 3.2E-39 269.0 21.9 208 94-306 9-219 (220)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.8E-33 2.3E-37 304.4 26.8 312 120-449 270-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 1E-30 3.5E-35 235.1 18.8 181 296-479 9-190 (191)
75 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.5E-30 8.6E-35 231.6 18.5 168 313-480 15-182 (185)
76 2ipc_A Preprotein translocase 100.0 1.5E-28 5.2E-33 256.9 32.0 318 117-453 76-700 (997)
77 1c4o_A DNA nucleotide excision 100.0 6.2E-29 2.1E-33 264.4 25.7 176 276-461 379-560 (664)
78 2d7d_A Uvrabc system protein B 100.0 7.9E-28 2.7E-32 255.7 26.9 175 276-460 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 1.7E-27 5.7E-32 209.1 19.0 150 314-464 6-155 (163)
80 1fuk_A Eukaryotic initiation f 100.0 3.6E-28 1.2E-32 213.8 13.9 160 317-477 3-163 (165)
81 1t5i_A C_terminal domain of A 100.0 9.7E-28 3.3E-32 212.3 15.1 160 316-476 4-164 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 6.3E-27 2.2E-31 207.9 16.9 151 315-466 5-162 (175)
83 3eaq_A Heat resistant RNA depe 99.9 5.2E-26 1.8E-30 208.2 17.0 147 319-466 7-153 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.9E-25 6.5E-30 214.0 16.6 146 318-464 3-148 (300)
85 3b6e_A Interferon-induced heli 99.9 1.6E-25 5.6E-30 206.0 12.1 167 117-286 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.9 9.7E-27 3.3E-31 205.6 0.0 149 317-466 3-152 (170)
87 2vl7_A XPD; helicase, unknown 99.9 4E-23 1.4E-27 215.4 23.7 101 344-450 384-520 (540)
88 1rif_A DAR protein, DNA helica 99.9 7.6E-25 2.6E-29 210.1 8.7 156 120-292 112-267 (282)
89 3crv_A XPD/RAD3 related DNA he 99.9 6.5E-21 2.2E-25 199.5 30.7 308 121-450 3-530 (551)
90 3llm_A ATP-dependent RNA helic 99.9 2.9E-22 9.8E-27 186.7 15.8 181 109-303 49-232 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 2.4E-19 8.2E-24 189.0 23.5 317 120-450 2-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 2.4E-20 8.2E-25 173.5 13.1 139 120-290 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 3.3E-20 1.1E-24 175.5 12.8 127 325-451 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.8E-09 1.7E-13 110.4 13.0 146 123-286 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.8 1E-06 3.5E-11 93.2 23.3 70 119-195 178-247 (624)
96 4b3f_X DNA-binding protein smu 98.7 5.3E-07 1.8E-11 95.9 19.7 68 121-196 189-257 (646)
97 2wjy_A Regulator of nonsense t 98.7 3.6E-06 1.2E-10 90.9 25.2 70 119-195 354-423 (800)
98 2xzl_A ATP-dependent helicase 98.7 3.2E-06 1.1E-10 91.4 24.4 71 119-196 358-428 (802)
99 3upu_A ATP-dependent DNA helic 98.6 1.9E-06 6.4E-11 87.7 18.6 131 117-284 21-162 (459)
100 3e1s_A Exodeoxyribonuclease V, 98.5 7.6E-07 2.6E-11 92.7 12.4 122 120-284 188-313 (574)
101 3lfu_A DNA helicase II; SF1 he 98.3 3.9E-05 1.3E-09 81.6 21.9 71 120-196 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 98.3 7.6E-06 2.6E-10 77.4 12.5 123 325-452 105-238 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.00058 2E-08 66.9 12.5 70 121-196 163-232 (385)
104 3vkw_A Replicase large subunit 97.5 0.00029 9.8E-09 70.0 9.8 106 138-285 163-268 (446)
105 3cpe_A Terminase, DNA packagin 97.3 0.0034 1.2E-07 65.7 15.3 72 121-198 163-234 (592)
106 3ec2_A DNA replication protein 97.2 0.0016 5.4E-08 56.7 9.3 32 123-154 16-56 (180)
107 1xx6_A Thymidine kinase; NESG, 97.2 0.0011 3.6E-08 58.4 8.1 39 136-182 8-46 (191)
108 2b8t_A Thymidine kinase; deoxy 97.1 0.00048 1.7E-08 62.2 5.5 91 136-259 12-102 (223)
109 2j9r_A Thymidine kinase; TK1, 97.1 0.00064 2.2E-08 60.5 5.9 37 138-182 30-66 (214)
110 2orw_A Thymidine kinase; TMTK, 97.1 0.0015 5E-08 57.3 7.9 39 136-182 3-41 (184)
111 3te6_A Regulatory protein SIR3 97.0 0.007 2.4E-07 57.6 12.4 27 136-163 45-71 (318)
112 2orv_A Thymidine kinase; TP4A 96.8 0.0029 9.8E-08 56.8 7.3 39 136-182 19-57 (234)
113 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0025 8.5E-08 56.6 5.7 39 136-182 28-66 (219)
114 1a5t_A Delta prime, HOLB; zinc 96.6 0.0068 2.3E-07 58.5 9.2 41 122-163 3-50 (334)
115 1l8q_A Chromosomal replication 96.4 0.011 3.9E-07 56.6 9.8 25 137-162 38-62 (324)
116 2zpa_A Uncharacterized protein 96.4 0.0056 1.9E-07 63.9 7.5 111 121-286 175-287 (671)
117 2p65_A Hypothetical protein PF 96.4 0.019 6.5E-07 49.6 10.0 25 136-161 43-67 (187)
118 2kjq_A DNAA-related protein; s 96.4 0.0019 6.6E-08 54.3 3.3 19 135-153 35-53 (149)
119 3kl4_A SRP54, signal recogniti 96.3 0.0093 3.2E-07 59.3 8.6 55 245-299 178-235 (433)
120 1w4r_A Thymidine kinase; type 96.2 0.0058 2E-07 53.4 5.8 38 136-181 20-57 (195)
121 2w58_A DNAI, primosome compone 96.2 0.023 7.9E-07 50.1 10.0 25 137-162 55-79 (202)
122 1jbk_A CLPB protein; beta barr 96.2 0.1 3.6E-06 44.9 14.0 25 137-162 44-68 (195)
123 2v1u_A Cell division control p 96.2 0.036 1.2E-06 54.2 11.9 19 136-154 44-62 (387)
124 1uaa_A REP helicase, protein ( 96.1 0.0063 2.2E-07 64.8 6.7 71 121-197 2-72 (673)
125 1g5t_A COB(I)alamin adenosyltr 96.0 0.073 2.5E-06 46.5 11.7 140 137-296 29-172 (196)
126 1d2n_A N-ethylmaleimide-sensit 96.0 0.042 1.4E-06 51.1 11.0 18 137-154 65-82 (272)
127 1pjr_A PCRA; DNA repair, DNA r 96.0 0.015 5.3E-07 62.3 8.7 71 120-196 10-80 (724)
128 2z4s_A Chromosomal replication 95.9 0.038 1.3E-06 55.4 10.6 44 246-289 194-239 (440)
129 3n70_A Transport activator; si 95.9 0.021 7E-07 47.6 7.3 22 133-154 21-42 (145)
130 2qgz_A Helicase loader, putati 95.8 0.011 3.8E-07 56.2 6.1 26 136-162 152-177 (308)
131 1gm5_A RECG; helicase, replica 95.8 0.028 9.6E-07 60.4 9.6 85 334-418 407-496 (780)
132 2chg_A Replication factor C sm 95.7 0.047 1.6E-06 48.5 9.7 41 245-286 101-141 (226)
133 3h4m_A Proteasome-activating n 95.7 0.039 1.3E-06 51.6 9.4 55 97-154 12-69 (285)
134 2qby_B CDC6 homolog 3, cell di 95.7 0.041 1.4E-06 53.9 9.8 37 249-286 136-173 (384)
135 3u4q_A ATP-dependent helicase/ 95.5 0.025 8.6E-07 64.4 8.5 71 121-195 10-80 (1232)
136 3u61_B DNA polymerase accessor 95.5 0.031 1.1E-06 53.4 8.0 41 245-286 104-145 (324)
137 3bos_A Putative DNA replicatio 95.4 0.025 8.5E-07 51.2 6.8 20 135-154 51-70 (242)
138 1fnn_A CDC6P, cell division co 95.4 0.028 9.5E-07 55.1 7.4 17 138-154 46-62 (389)
139 3dm5_A SRP54, signal recogniti 95.3 0.041 1.4E-06 54.7 8.2 54 246-299 182-236 (443)
140 4b4t_M 26S protease regulatory 95.1 0.088 3E-06 52.3 10.0 57 95-154 174-233 (434)
141 3eie_A Vacuolar protein sortin 95.1 0.1 3.5E-06 49.8 10.3 52 97-154 13-69 (322)
142 4b4t_J 26S protease regulatory 95.1 0.14 4.7E-06 50.1 11.1 55 97-154 143-200 (405)
143 2gno_A DNA polymerase III, gam 95.0 0.061 2.1E-06 51.0 8.2 40 244-284 80-119 (305)
144 3syl_A Protein CBBX; photosynt 94.9 0.034 1.2E-06 52.7 6.3 19 137-155 68-86 (309)
145 3uk6_A RUVB-like 2; hexameric 94.8 0.22 7.4E-06 48.3 12.0 19 137-155 71-89 (368)
146 2qby_A CDC6 homolog 1, cell di 94.7 0.066 2.3E-06 52.2 8.0 19 136-154 45-63 (386)
147 3cf0_A Transitional endoplasmi 94.7 0.059 2E-06 51.0 7.3 55 97-154 10-67 (301)
148 1njg_A DNA polymerase III subu 94.6 0.44 1.5E-05 42.5 12.9 23 138-161 47-69 (250)
149 3pfi_A Holliday junction ATP-d 94.5 0.23 7.8E-06 47.6 11.0 18 137-154 56-73 (338)
150 1iqp_A RFCS; clamp loader, ext 94.4 0.09 3.1E-06 50.0 7.9 41 245-286 109-149 (327)
151 2dr3_A UPF0273 protein PH0284; 94.4 0.092 3.2E-06 47.6 7.6 52 135-195 22-73 (247)
152 4b4t_H 26S protease regulatory 94.1 0.31 1.1E-05 48.5 10.9 56 96-154 203-261 (467)
153 1jr3_A DNA polymerase III subu 94.0 0.2 6.8E-06 48.6 9.7 39 245-284 118-156 (373)
154 1sxj_D Activator 1 41 kDa subu 94.0 0.18 6.3E-06 48.4 9.3 41 245-286 132-172 (353)
155 1sxj_E Activator 1 40 kDa subu 93.9 0.099 3.4E-06 50.5 7.1 42 245-287 133-174 (354)
156 3oiy_A Reverse gyrase helicase 93.9 0.19 6.5E-06 49.7 9.3 83 338-420 58-147 (414)
157 2qz4_A Paraplegin; AAA+, SPG7, 93.7 0.76 2.6E-05 41.9 12.5 19 136-154 39-57 (262)
158 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.26 8.8E-06 44.1 9.0 21 135-155 22-42 (235)
159 2l8b_A Protein TRAI, DNA helic 93.6 0.071 2.4E-06 45.7 4.6 120 123-286 36-158 (189)
160 4b4t_K 26S protease regulatory 93.6 0.31 1E-05 48.3 9.9 19 136-154 206-224 (428)
161 2qp9_X Vacuolar protein sortin 93.3 0.19 6.4E-06 48.7 7.8 18 137-154 85-102 (355)
162 3pvs_A Replication-associated 93.3 0.11 3.8E-06 52.0 6.3 18 137-154 51-68 (447)
163 4b4t_I 26S protease regulatory 93.2 0.31 1.1E-05 48.0 9.2 18 137-154 217-234 (437)
164 1sxj_C Activator 1 40 kDa subu 93.2 0.3 1E-05 46.9 9.1 39 245-284 109-147 (340)
165 2eyq_A TRCF, transcription-rep 92.8 0.35 1.2E-05 54.4 10.2 79 339-417 647-730 (1151)
166 1sxj_B Activator 1 37 kDa subu 92.7 0.17 5.8E-06 47.9 6.6 40 246-286 107-146 (323)
167 1w5s_A Origin recognition comp 92.6 0.25 8.5E-06 48.7 7.8 18 137-154 51-70 (412)
168 3vfd_A Spastin; ATPase, microt 92.5 0.39 1.3E-05 47.1 9.0 19 136-154 148-166 (389)
169 2q6t_A DNAB replication FORK h 92.3 0.28 9.5E-06 49.1 7.7 38 136-180 200-237 (444)
170 2r6a_A DNAB helicase, replicat 92.2 0.62 2.1E-05 46.7 10.2 38 136-180 203-240 (454)
171 1sxj_A Activator 1 95 kDa subu 92.1 0.41 1.4E-05 48.9 8.9 41 245-287 147-189 (516)
172 1hqc_A RUVB; extended AAA-ATPa 92.0 0.19 6.7E-06 47.7 6.0 19 136-154 38-56 (324)
173 2px0_A Flagellar biosynthesis 91.9 0.68 2.3E-05 43.4 9.4 20 136-155 105-124 (296)
174 3cmu_A Protein RECA, recombina 91.7 0.21 7.3E-06 58.5 6.7 45 130-182 1415-1465(2050)
175 2p6n_A ATP-dependent RNA helic 91.7 1.5 5.3E-05 37.9 10.9 73 172-254 54-130 (191)
176 2l82_A Designed protein OR32; 91.6 1.4 4.7E-05 33.4 8.8 48 347-394 5-52 (162)
177 3hjh_A Transcription-repair-co 91.6 0.69 2.4E-05 46.6 9.6 75 332-420 372-446 (483)
178 3hu3_A Transitional endoplasmi 91.6 0.5 1.7E-05 47.8 8.6 19 136-154 238-256 (489)
179 2ehv_A Hypothetical protein PH 91.5 0.2 6.8E-06 45.5 5.2 22 134-155 28-49 (251)
180 1ls1_A Signal recognition part 91.3 1.3 4.6E-05 41.4 10.9 53 245-297 179-232 (295)
181 2fna_A Conserved hypothetical 91.3 5.8 0.0002 37.5 15.8 54 229-287 123-179 (357)
182 1n0w_A DNA repair protein RAD5 90.9 0.41 1.4E-05 43.1 6.7 21 135-155 23-43 (243)
183 4ddu_A Reverse gyrase; topoiso 90.8 0.58 2E-05 52.4 8.9 80 341-420 118-204 (1104)
184 3cf2_A TER ATPase, transitiona 90.7 0.31 1.1E-05 52.2 6.3 57 96-153 471-528 (806)
185 1nlf_A Regulatory protein REPA 90.7 0.97 3.3E-05 41.8 9.2 23 133-155 27-49 (279)
186 1t6n_A Probable ATP-dependent 90.4 0.66 2.3E-05 41.1 7.5 72 345-419 83-165 (220)
187 1qvr_A CLPB protein; coiled co 90.3 0.68 2.3E-05 50.5 8.8 24 137-161 192-215 (854)
188 2zr9_A Protein RECA, recombina 90.0 0.2 6.7E-06 48.4 3.8 38 136-181 61-98 (349)
189 2chq_A Replication factor C sm 89.9 0.36 1.2E-05 45.5 5.5 17 138-154 40-56 (319)
190 1oyw_A RECQ helicase, ATP-depe 89.8 1.1 3.8E-05 45.7 9.5 59 344-402 65-123 (523)
191 3ber_A Probable ATP-dependent 89.6 2 6.8E-05 38.9 10.2 72 344-419 111-193 (249)
192 1xp8_A RECA protein, recombina 89.2 0.55 1.9E-05 45.5 6.3 38 136-181 74-111 (366)
193 1vma_A Cell division protein F 89.1 3.7 0.00013 38.6 11.8 18 138-155 106-123 (306)
194 2hjv_A ATP-dependent RNA helic 89.1 1.4 4.8E-05 36.9 8.2 74 172-255 35-112 (163)
195 3co5_A Putative two-component 89.0 0.32 1.1E-05 40.0 3.9 20 133-152 24-43 (143)
196 2v1x_A ATP-dependent DNA helic 88.9 1.1 3.9E-05 46.4 8.8 60 343-402 83-144 (591)
197 1u94_A RECA protein, recombina 88.8 0.28 9.7E-06 47.4 3.9 38 135-180 62-99 (356)
198 4a1f_A DNAB helicase, replicat 88.7 0.35 1.2E-05 46.3 4.4 38 135-180 45-82 (338)
199 2rb4_A ATP-dependent RNA helic 88.5 1.8 6E-05 36.8 8.5 73 172-254 34-110 (175)
200 3hr8_A Protein RECA; alpha and 88.3 0.35 1.2E-05 46.6 4.2 39 136-182 61-99 (356)
201 3m6a_A ATP-dependent protease 88.3 0.5 1.7E-05 48.6 5.5 20 135-154 107-126 (543)
202 2z43_A DNA repair and recombin 87.9 0.8 2.7E-05 43.6 6.4 65 129-195 95-165 (324)
203 1r6b_X CLPA protein; AAA+, N-t 87.7 2.5 8.6E-05 45.3 10.9 20 136-155 207-226 (758)
204 1fuk_A Eukaryotic initiation f 87.2 1.9 6.4E-05 36.2 7.8 74 172-255 30-107 (165)
205 2jgn_A DBX, DDX3, ATP-dependen 87.1 1.6 5.6E-05 37.5 7.5 72 172-253 46-121 (185)
206 2eyu_A Twitching motility prot 87.0 0.42 1.4E-05 44.0 3.7 20 133-152 22-41 (261)
207 3cmu_A Protein RECA, recombina 86.8 0.98 3.4E-05 53.1 7.3 46 135-189 1080-1125(2050)
208 3cf2_A TER ATPase, transitiona 86.8 0.85 2.9E-05 48.9 6.3 17 137-153 239-255 (806)
209 3io5_A Recombination and repai 86.7 0.89 3E-05 42.9 5.7 90 138-259 30-124 (333)
210 3jvv_A Twitching mobility prot 86.7 0.8 2.7E-05 44.2 5.7 18 135-152 122-139 (356)
211 2ffh_A Protein (FFH); SRP54, s 86.5 5.2 0.00018 39.4 11.5 18 138-155 100-117 (425)
212 1v5w_A DMC1, meiotic recombina 86.1 0.88 3E-05 43.7 5.6 65 129-195 110-180 (343)
213 3eaq_A Heat resistant RNA depe 86.0 2.3 7.9E-05 37.4 8.0 71 172-252 31-105 (212)
214 3fe2_A Probable ATP-dependent 85.7 4.5 0.00016 36.2 10.0 73 344-420 102-184 (242)
215 1t5i_A C_terminal domain of A 85.6 4.3 0.00015 34.2 9.3 75 172-256 31-109 (172)
216 2oxc_A Probable ATP-dependent 85.4 1.5 5E-05 39.2 6.5 70 344-418 92-172 (230)
217 1xti_A Probable ATP-dependent 85.2 2.5 8.7E-05 40.8 8.6 72 344-418 76-158 (391)
218 2i4i_A ATP-dependent RNA helic 85.1 5 0.00017 39.1 10.8 71 172-252 276-350 (417)
219 3e70_C DPA, signal recognition 85.0 1.8 6.3E-05 41.1 7.2 54 246-299 211-265 (328)
220 2j37_W Signal recognition part 84.8 3.3 0.00011 41.9 9.2 35 138-180 103-137 (504)
221 1e9r_A Conjugal transfer prote 84.7 0.97 3.3E-05 44.9 5.4 43 136-186 53-95 (437)
222 4b4t_L 26S protease subunit RP 84.3 0.87 3E-05 45.1 4.7 19 136-154 215-233 (437)
223 3iuy_A Probable ATP-dependent 84.2 3.2 0.00011 36.7 8.2 73 343-419 93-174 (228)
224 3pxi_A Negative regulator of g 84.1 3.8 0.00013 43.9 10.1 17 138-154 523-539 (758)
225 3cmw_A Protein RECA, recombina 84.1 1.1 3.6E-05 52.1 5.8 119 136-289 1431-1569(1706)
226 3u4q_B ATP-dependent helicase/ 83.7 2.5 8.7E-05 47.7 8.8 89 139-257 4-92 (1166)
227 2i1q_A DNA repair and recombin 83.7 1.2 4.1E-05 42.2 5.3 29 129-157 86-119 (322)
228 2pl3_A Probable ATP-dependent 83.5 4 0.00014 36.3 8.6 71 343-418 96-177 (236)
229 3bor_A Human initiation factor 82.9 3.6 0.00012 36.8 8.0 72 344-418 98-179 (237)
230 1ypw_A Transitional endoplasmi 82.3 3.6 0.00012 44.4 8.9 19 135-153 237-255 (806)
231 2gxq_A Heat resistant RNA depe 82.2 7.5 0.00026 33.5 9.7 72 344-419 72-151 (207)
232 1p9r_A General secretion pathw 82.1 2.4 8.3E-05 41.8 6.9 27 126-152 155-183 (418)
233 1vec_A ATP-dependent RNA helic 81.9 3.8 0.00013 35.5 7.5 71 344-418 71-152 (206)
234 1j8m_F SRP54, signal recogniti 81.7 5.8 0.0002 37.0 9.1 18 138-155 100-117 (297)
235 3i32_A Heat resistant RNA depe 80.9 3.6 0.00012 38.5 7.4 74 172-255 28-105 (300)
236 3gk5_A Uncharacterized rhodane 79.3 1.9 6.4E-05 33.3 4.1 46 334-379 45-90 (108)
237 3i5x_A ATP-dependent RNA helic 79.1 15 0.00053 37.4 12.2 77 172-255 339-419 (563)
238 3b85_A Phosphate starvation-in 78.9 2.2 7.6E-05 37.5 4.9 31 122-152 8-38 (208)
239 1wp9_A ATP-dependent RNA helic 78.6 5.7 0.0002 39.3 8.6 71 343-418 51-131 (494)
240 3hws_A ATP-dependent CLP prote 78.3 3.7 0.00013 39.5 6.8 21 135-155 50-70 (363)
241 3ly5_A ATP-dependent RNA helic 77.9 13 0.00043 33.7 10.0 71 344-418 126-207 (262)
242 2zts_A Putative uncharacterize 77.9 1.5 5.1E-05 39.4 3.6 52 136-195 30-81 (251)
243 2oap_1 GSPE-2, type II secreti 77.8 1.9 6.7E-05 43.7 4.7 39 112-152 237-276 (511)
244 3g5j_A Putative ATP/GTP bindin 77.7 2.9 0.0001 33.4 5.0 48 332-379 76-125 (134)
245 4ag6_A VIRB4 ATPase, type IV s 77.6 2.3 8E-05 41.4 5.1 42 135-184 34-75 (392)
246 1gku_B Reverse gyrase, TOP-RG; 77.5 5 0.00017 44.7 8.3 75 343-419 98-182 (1054)
247 2yhs_A FTSY, cell division pro 77.2 6.2 0.00021 39.6 8.0 54 246-299 375-435 (503)
248 3sqw_A ATP-dependent RNA helic 76.9 19 0.00066 36.9 12.2 78 172-256 288-369 (579)
249 1u0j_A DNA replication protein 76.9 5 0.00017 36.7 6.7 44 108-154 73-122 (267)
250 1ofh_A ATP-dependent HSL prote 76.8 5.6 0.00019 36.9 7.4 19 136-154 50-68 (310)
251 3bh0_A DNAB-like replicative h 76.6 2.6 8.7E-05 39.8 4.9 38 135-180 67-104 (315)
252 3nbx_X ATPase RAVA; AAA+ ATPas 76.5 3.1 0.00011 42.0 5.8 27 127-153 32-58 (500)
253 2bjv_A PSP operon transcriptio 76.4 2.1 7.1E-05 39.1 4.1 21 134-154 27-47 (265)
254 1lv7_A FTSH; alpha/beta domain 76.3 4.3 0.00015 36.7 6.3 18 137-154 46-63 (257)
255 2d7d_A Uvrabc system protein B 76.1 13 0.00043 39.1 10.5 77 172-258 445-525 (661)
256 1tf7_A KAIC; homohexamer, hexa 76.0 9.8 0.00034 38.6 9.5 52 134-194 279-330 (525)
257 2r8r_A Sensor protein; KDPD, P 75.9 2.8 9.5E-05 37.4 4.6 21 138-158 8-28 (228)
258 1yks_A Genome polyprotein [con 75.6 3.4 0.00012 41.1 5.7 68 172-251 177-245 (440)
259 1xwi_A SKD1 protein; VPS4B, AA 75.6 4.7 0.00016 38.1 6.5 52 97-154 7-63 (322)
260 3b9p_A CG5977-PA, isoform A; A 75.5 4.9 0.00017 37.2 6.6 19 136-154 54-72 (297)
261 1wrb_A DJVLGB; RNA helicase, D 75.4 13 0.00044 33.3 9.3 70 345-418 101-180 (253)
262 3nwn_A Kinesin-like protein KI 75.4 2.1 7.2E-05 41.2 3.9 25 129-153 96-122 (359)
263 1qde_A EIF4A, translation init 75.2 2.9 9.9E-05 36.8 4.7 70 344-418 82-161 (224)
264 3fht_A ATP-dependent RNA helic 75.1 7.9 0.00027 37.5 8.3 73 172-254 266-342 (412)
265 3vaa_A Shikimate kinase, SK; s 75.0 1.8 6.3E-05 37.5 3.2 21 135-155 24-44 (199)
266 3a8t_A Adenylate isopentenyltr 74.4 1.7 5.8E-05 41.3 3.0 19 137-155 41-59 (339)
267 3pey_A ATP-dependent RNA helic 74.1 8.5 0.00029 36.9 8.2 76 172-257 243-322 (395)
268 1kgd_A CASK, peripheral plasma 73.9 2 6.7E-05 36.7 3.1 18 135-152 4-21 (180)
269 2r44_A Uncharacterized protein 73.8 2.2 7.5E-05 40.4 3.7 23 132-154 42-64 (331)
270 1hv8_A Putative ATP-dependent 73.6 8.7 0.0003 36.4 8.0 73 172-254 238-314 (367)
271 3ipz_A Monothiol glutaredoxin- 73.5 15 0.00051 28.2 7.9 64 335-398 8-77 (109)
272 1c4o_A DNA nucleotide excision 73.3 16 0.00056 38.2 10.5 77 172-258 439-519 (664)
273 1qhx_A CPT, protein (chloramph 73.1 1.6 5.6E-05 36.9 2.4 19 136-154 3-21 (178)
274 2qmh_A HPR kinase/phosphorylas 73.1 1.7 5.9E-05 37.8 2.5 19 136-154 34-52 (205)
275 3trf_A Shikimate kinase, SK; a 73.0 2.2 7.4E-05 36.4 3.1 20 136-155 5-24 (185)
276 1bg2_A Kinesin; motor protein, 72.7 2.7 9.3E-05 39.8 4.0 25 129-153 69-95 (325)
277 2gza_A Type IV secretion syste 72.6 2.5 8.4E-05 40.8 3.7 20 133-152 172-191 (361)
278 3dc4_A Kinesin-like protein NO 72.3 2.5 8.7E-05 40.3 3.6 24 129-152 86-111 (344)
279 2cvh_A DNA repair and recombin 72.2 3.4 0.00011 36.2 4.3 21 135-155 19-39 (220)
280 3lw7_A Adenylate kinase relate 72.2 1.7 5.9E-05 36.4 2.3 17 138-154 3-19 (179)
281 3t0q_A AGR253WP; kinesin, alph 72.0 2.7 9.2E-05 40.3 3.8 26 128-153 76-103 (349)
282 1v8k_A Kinesin-like protein KI 72.0 2.8 9.5E-05 41.0 3.9 24 130-153 147-172 (410)
283 1q0u_A Bstdead; DEAD protein, 71.9 2.2 7.7E-05 37.5 3.1 71 344-418 72-156 (219)
284 2x8a_A Nuclear valosin-contain 71.8 1.1 3.9E-05 41.3 1.1 53 97-152 5-60 (274)
285 3flh_A Uncharacterized protein 71.7 3.1 0.00011 33.0 3.6 45 334-378 61-107 (124)
286 4etp_A Kinesin-like protein KA 71.6 3.1 0.0001 40.7 4.1 25 129-153 132-158 (403)
287 1gmx_A GLPE protein; transfera 71.5 4.5 0.00016 31.0 4.4 45 335-379 49-94 (108)
288 3exa_A TRNA delta(2)-isopenten 71.5 2.2 7.6E-05 40.1 3.0 18 138-155 5-22 (322)
289 1f9v_A Kinesin-like protein KA 71.3 2.7 9.1E-05 40.3 3.6 25 129-153 76-102 (347)
290 2j0s_A ATP-dependent RNA helic 71.3 9.1 0.00031 37.1 7.7 73 172-254 276-352 (410)
291 1zp6_A Hypothetical protein AT 71.3 1.4 4.9E-05 37.8 1.5 19 134-152 7-25 (191)
292 3foz_A TRNA delta(2)-isopenten 71.2 2.3 7.8E-05 39.9 3.0 18 138-155 12-29 (316)
293 3b6u_A Kinesin-like protein KI 71.2 3 0.0001 40.2 3.9 25 129-153 93-119 (372)
294 1tue_A Replication protein E1; 71.1 5.3 0.00018 35.0 5.1 44 109-154 29-76 (212)
295 3zyw_A Glutaredoxin-3; metal b 71.1 16 0.00053 28.2 7.5 65 335-399 6-76 (111)
296 2h58_A Kinesin-like protein KI 71.1 3.1 0.00011 39.5 4.0 26 128-153 71-98 (330)
297 2nr8_A Kinesin-like protein KI 71.1 3.1 0.00011 40.0 3.9 25 128-152 94-120 (358)
298 2jtq_A Phage shock protein E; 71.0 9.4 0.00032 27.6 5.9 43 335-378 30-75 (85)
299 1t5c_A CENP-E protein, centrom 71.0 3.1 0.00011 39.8 3.9 25 129-153 69-95 (349)
300 2vvg_A Kinesin-2; motor protei 70.9 3.1 0.00011 39.8 4.0 24 130-153 82-107 (350)
301 2ze6_A Isopentenyl transferase 70.9 2.3 7.9E-05 38.7 3.0 16 139-154 4-19 (253)
302 3tau_A Guanylate kinase, GMP k 70.9 2.6 9E-05 36.9 3.2 19 135-153 7-25 (208)
303 3iij_A Coilin-interacting nucl 70.8 2.1 7.2E-05 36.3 2.5 20 135-154 10-29 (180)
304 4a14_A Kinesin, kinesin-like p 70.6 3.2 0.00011 39.7 4.0 25 129-153 75-101 (344)
305 1ojl_A Transcriptional regulat 70.6 2.9 9.8E-05 39.2 3.6 20 135-154 24-43 (304)
306 3gbj_A KIF13B protein; kinesin 70.5 3.2 0.00011 39.8 3.9 25 129-153 84-110 (354)
307 2y65_A Kinesin, kinesin heavy 70.5 3.2 0.00011 39.9 4.0 25 129-153 76-102 (365)
308 2zfi_A Kinesin-like protein KI 70.3 3.3 0.00011 40.0 4.0 25 129-153 81-107 (366)
309 4f4c_A Multidrug resistance pr 70.3 1.5 5E-05 50.3 1.7 41 244-284 1233-1273(1321)
310 1x88_A Kinesin-like protein KI 70.3 3 0.0001 40.1 3.7 25 129-153 80-106 (359)
311 4a2p_A RIG-I, retinoic acid in 70.2 5.8 0.0002 40.3 6.2 71 344-418 55-136 (556)
312 1goj_A Kinesin, kinesin heavy 70.2 3.2 0.00011 39.8 3.9 24 130-153 73-98 (355)
313 1ixz_A ATP-dependent metallopr 70.1 1.9 6.4E-05 39.1 2.2 55 96-153 10-66 (254)
314 1lvg_A Guanylate kinase, GMP k 70.0 2.8 9.7E-05 36.4 3.2 18 135-152 3-20 (198)
315 3lre_A Kinesin-like protein KI 70.0 3.2 0.00011 39.8 3.8 24 130-153 98-123 (355)
316 2qor_A Guanylate kinase; phosp 69.9 2.1 7.2E-05 37.3 2.3 22 133-154 9-30 (204)
317 2pt7_A CAG-ALFA; ATPase, prote 69.8 2.3 7.9E-05 40.4 2.8 20 133-152 168-187 (330)
318 1s2m_A Putative ATP-dependent 69.8 9.9 0.00034 36.7 7.5 73 172-254 258-334 (400)
319 2wbe_C Bipolar kinesin KRP-130 69.8 2.7 9.4E-05 40.6 3.3 24 129-152 92-117 (373)
320 1wv9_A Rhodanese homolog TT165 69.7 4.7 0.00016 30.0 4.0 38 341-379 51-88 (94)
321 3bgw_A DNAB-like replicative h 69.6 4.4 0.00015 40.3 4.9 37 136-180 197-233 (444)
322 2c9o_A RUVB-like 1; hexameric 69.5 4.1 0.00014 40.6 4.7 19 136-154 63-81 (456)
323 1fuu_A Yeast initiation factor 69.5 14 0.00047 35.4 8.5 71 343-418 88-168 (394)
324 2heh_A KIF2C protein; kinesin, 69.0 3.4 0.00012 40.1 3.7 25 129-153 126-152 (387)
325 2yjt_D ATP-dependent RNA helic 71.9 1 3.4E-05 38.2 0.0 73 172-254 30-106 (170)
326 2db3_A ATP-dependent RNA helic 68.8 11 0.00039 37.0 7.8 68 175-252 303-374 (434)
327 1kht_A Adenylate kinase; phosp 68.6 2.4 8.3E-05 36.2 2.5 20 136-155 3-22 (192)
328 1w36_B RECB, exodeoxyribonucle 68.3 9.2 0.00032 43.2 7.7 58 138-195 18-79 (1180)
329 3d8b_A Fidgetin-like protein 1 68.3 7.6 0.00026 37.2 6.2 19 136-154 117-135 (357)
330 2j41_A Guanylate kinase; GMP, 68.2 3 0.0001 36.1 3.1 20 134-153 4-23 (207)
331 1nks_A Adenylate kinase; therm 68.1 8.1 0.00028 32.8 5.8 18 138-155 3-20 (194)
332 2r62_A Cell division protease 68.1 4.2 0.00014 37.0 4.1 19 136-154 44-62 (268)
333 2owm_A Nckin3-434, related to 68.1 3.4 0.00012 40.9 3.6 24 130-153 129-154 (443)
334 1y63_A LMAJ004144AAA protein; 68.0 3.3 0.00011 35.4 3.2 20 135-154 9-28 (184)
335 1kag_A SKI, shikimate kinase I 68.0 3.6 0.00012 34.5 3.4 18 136-153 4-21 (173)
336 3cob_A Kinesin heavy chain-lik 67.7 3.3 0.00011 39.9 3.4 25 129-153 71-97 (369)
337 3u06_A Protein claret segregat 67.7 3.9 0.00013 40.0 4.0 26 128-153 129-156 (412)
338 3iwh_A Rhodanese-like domain p 67.7 3.2 0.00011 31.7 2.7 39 340-378 52-90 (103)
339 2yan_A Glutaredoxin-3; oxidore 67.6 20 0.00068 27.1 7.4 62 338-399 10-77 (105)
340 3kb2_A SPBC2 prophage-derived 67.6 2.4 8.3E-05 35.4 2.2 17 138-154 3-19 (173)
341 1sky_E F1-ATPase, F1-ATP synth 67.4 9.1 0.00031 38.1 6.5 23 133-155 148-170 (473)
342 2rep_A Kinesin-like protein KI 67.1 4 0.00014 39.5 3.8 25 129-153 107-133 (376)
343 3crm_A TRNA delta(2)-isopenten 67.1 3.1 0.00011 39.3 3.0 18 138-155 7-24 (323)
344 3b5x_A Lipid A export ATP-bind 67.0 6.2 0.00021 40.8 5.6 41 244-284 496-536 (582)
345 1ly1_A Polynucleotide kinase; 66.9 2.6 8.9E-05 35.6 2.3 17 138-154 4-20 (181)
346 3t15_A Ribulose bisphosphate c 66.7 3.1 0.00011 38.7 2.9 18 137-154 37-54 (293)
347 1cr0_A DNA primase/helicase; R 66.7 5.3 0.00018 37.0 4.6 22 134-155 33-54 (296)
348 2ewv_A Twitching motility prot 66.5 3 0.0001 40.4 2.9 19 134-152 134-152 (372)
349 1ex7_A Guanylate kinase; subst 66.4 3.1 0.00011 35.8 2.7 16 137-152 2-17 (186)
350 1um8_A ATP-dependent CLP prote 66.4 12 0.00042 35.9 7.3 19 136-154 72-90 (376)
351 2v6i_A RNA helicase; membrane, 66.3 7.9 0.00027 38.2 6.0 67 172-250 171-238 (431)
352 3ney_A 55 kDa erythrocyte memb 66.3 3.6 0.00012 35.8 3.1 18 135-152 18-35 (197)
353 1iy2_A ATP-dependent metallopr 66.1 2.5 8.4E-05 39.0 2.1 17 137-153 74-90 (278)
354 3tr0_A Guanylate kinase, GMP k 65.9 3.8 0.00013 35.4 3.2 19 135-153 6-24 (205)
355 3bfn_A Kinesin-like protein KI 65.8 3.5 0.00012 40.0 3.1 23 131-153 92-116 (388)
356 3nwj_A ATSK2; P loop, shikimat 65.6 4.4 0.00015 36.7 3.6 21 134-154 46-66 (250)
357 4eun_A Thermoresistant glucoki 65.4 3.1 0.00011 36.0 2.5 20 135-154 28-47 (200)
358 3foj_A Uncharacterized protein 65.4 3.7 0.00013 31.0 2.7 38 341-378 53-90 (100)
359 3eme_A Rhodanese-like domain p 65.1 3.9 0.00013 31.1 2.7 38 341-378 53-90 (103)
360 2wv9_A Flavivirin protease NS2 64.8 7.7 0.00026 40.8 5.8 68 172-251 410-478 (673)
361 4akg_A Glutathione S-transfera 64.5 9.1 0.00031 46.8 6.9 49 106-155 890-942 (2695)
362 3a00_A Guanylate kinase, GMP k 64.5 4.4 0.00015 34.6 3.3 16 137-152 2-17 (186)
363 1z6g_A Guanylate kinase; struc 64.1 4.7 0.00016 35.6 3.5 20 133-152 20-39 (218)
364 3d3q_A TRNA delta(2)-isopenten 64.1 3.8 0.00013 39.0 3.0 18 138-155 9-26 (340)
365 1knq_A Gluconate kinase; ALFA/ 63.9 2.9 9.9E-05 35.2 2.0 19 136-154 8-26 (175)
366 3dkp_A Probable ATP-dependent 63.9 9.6 0.00033 33.9 5.6 74 344-420 98-183 (245)
367 2r2a_A Uncharacterized protein 63.9 4.6 0.00016 35.1 3.3 17 139-155 8-24 (199)
368 4gp7_A Metallophosphoesterase; 63.7 3 0.0001 35.2 2.0 18 135-152 8-25 (171)
369 1wik_A Thioredoxin-like protei 63.3 46 0.0016 25.2 8.8 48 343-390 13-66 (109)
370 3cm0_A Adenylate kinase; ATP-b 63.2 3.3 0.00011 35.2 2.2 20 136-155 4-23 (186)
371 1rj9_A FTSY, signal recognitio 63.2 7 0.00024 36.6 4.6 17 136-152 102-118 (304)
372 2yvu_A Probable adenylyl-sulfa 62.9 6.9 0.00024 33.2 4.3 20 136-155 13-32 (186)
373 3pxg_A Negative regulator of g 62.5 8.4 0.00029 38.5 5.4 25 136-161 201-225 (468)
374 1xjc_A MOBB protein homolog; s 62.2 8.4 0.00029 32.5 4.5 25 138-163 6-30 (169)
375 2ius_A DNA translocase FTSK; n 61.9 11 0.00038 38.0 6.1 18 136-153 167-184 (512)
376 3eph_A TRNA isopentenyltransfe 61.8 4.2 0.00015 39.6 2.9 18 138-155 4-21 (409)
377 3o8b_A HCV NS3 protease/helica 61.8 10 0.00035 39.6 6.0 66 172-251 396-461 (666)
378 2c95_A Adenylate kinase 1; tra 61.7 5.8 0.0002 33.9 3.6 21 134-154 7-27 (196)
379 2xau_A PRE-mRNA-splicing facto 61.6 17 0.00057 38.9 7.8 75 172-252 303-393 (773)
380 2rhm_A Putative kinase; P-loop 61.5 3.7 0.00013 35.1 2.2 18 137-154 6-23 (193)
381 4fcw_A Chaperone protein CLPB; 61.5 5.3 0.00018 37.1 3.5 17 138-154 49-65 (311)
382 1znw_A Guanylate kinase, GMP k 61.4 5.2 0.00018 34.8 3.2 21 132-152 16-36 (207)
383 3t61_A Gluconokinase; PSI-biol 61.3 3.8 0.00013 35.5 2.3 18 137-154 19-36 (202)
384 2jlq_A Serine protease subunit 61.3 10 0.00034 37.7 5.7 68 172-251 188-256 (451)
385 3fmo_B ATP-dependent RNA helic 61.1 17 0.00058 33.7 6.9 81 333-420 148-243 (300)
386 2fsf_A Preprotein translocase 61.0 22 0.00077 38.0 8.4 80 333-418 104-200 (853)
387 2bdt_A BH3686; alpha-beta prot 61.0 3.9 0.00013 35.0 2.3 17 138-154 4-20 (189)
388 1zuh_A Shikimate kinase; alpha 61.0 5.1 0.00017 33.4 3.0 19 137-155 8-26 (168)
389 2z0m_A 337AA long hypothetical 60.7 18 0.00061 33.6 7.2 70 172-255 220-293 (337)
390 4f4c_A Multidrug resistance pr 60.6 9.9 0.00034 43.5 6.1 41 244-284 570-610 (1321)
391 2v54_A DTMP kinase, thymidylat 60.5 3.7 0.00013 35.4 2.1 20 135-154 3-22 (204)
392 1s96_A Guanylate kinase, GMP k 60.5 4.3 0.00015 35.9 2.5 20 133-152 13-32 (219)
393 1via_A Shikimate kinase; struc 60.3 5.7 0.0002 33.4 3.2 18 138-155 6-23 (175)
394 3uie_A Adenylyl-sulfate kinase 60.3 4.7 0.00016 34.9 2.7 20 135-154 24-43 (200)
395 3tbk_A RIG-I helicase domain; 60.3 9.6 0.00033 38.6 5.5 71 344-418 52-133 (555)
396 4a2q_A RIG-I, retinoic acid in 60.2 15 0.00053 39.4 7.3 71 344-418 296-377 (797)
397 1zu4_A FTSY; GTPase, signal re 60.2 7.9 0.00027 36.5 4.5 18 138-155 107-124 (320)
398 3gx8_A Monothiol glutaredoxin- 60.1 35 0.0012 26.6 7.6 53 336-388 7-68 (121)
399 1tev_A UMP-CMP kinase; ploop, 59.9 3.7 0.00013 35.1 1.9 18 137-154 4-21 (196)
400 1ak2_A Adenylate kinase isoenz 59.6 5.4 0.00019 35.5 3.1 20 136-155 16-35 (233)
401 1f2t_A RAD50 ABC-ATPase; DNA d 59.4 6.6 0.00023 32.2 3.3 15 138-152 25-39 (149)
402 1gvn_B Zeta; postsegregational 59.3 3.9 0.00013 37.9 2.1 17 138-154 35-51 (287)
403 3sr0_A Adenylate kinase; phosp 59.0 5.6 0.00019 34.8 3.0 18 138-155 2-19 (206)
404 3fb4_A Adenylate kinase; psych 58.8 4.4 0.00015 35.5 2.3 18 138-155 2-19 (216)
405 1in4_A RUVB, holliday junction 58.8 5.7 0.00019 37.7 3.2 18 137-154 52-69 (334)
406 2oca_A DAR protein, ATP-depend 58.7 69 0.0024 31.9 11.6 74 174-256 349-426 (510)
407 3kta_A Chromosome segregation 58.6 6.5 0.00022 33.2 3.3 15 138-152 28-42 (182)
408 3eiq_A Eukaryotic initiation f 58.4 25 0.00087 33.8 8.0 73 343-418 107-189 (414)
409 2wem_A Glutaredoxin-related pr 58.3 24 0.00082 27.5 6.3 60 340-399 15-81 (118)
410 1m7g_A Adenylylsulfate kinase; 58.2 5.5 0.00019 34.8 2.8 31 123-154 13-43 (211)
411 2bwj_A Adenylate kinase 5; pho 58.1 5.3 0.00018 34.2 2.7 19 136-154 12-30 (199)
412 1tf5_A Preprotein translocase 58.0 32 0.0011 36.8 8.9 70 342-417 122-208 (844)
413 4anj_A Unconventional myosin-V 58.0 11 0.00038 41.6 5.6 69 93-162 92-169 (1052)
414 2wci_A Glutaredoxin-4; redox-a 57.8 16 0.00054 29.5 5.2 57 343-399 33-95 (135)
415 3hix_A ALR3790 protein; rhodan 57.7 8.7 0.0003 29.3 3.6 39 340-378 48-87 (106)
416 1e6c_A Shikimate kinase; phosp 57.6 5.3 0.00018 33.3 2.5 18 137-154 3-20 (173)
417 3dl0_A Adenylate kinase; phosp 57.6 4.7 0.00016 35.3 2.3 18 138-155 2-19 (216)
418 1tq1_A AT5G66040, senescence-a 57.2 7.2 0.00025 31.0 3.1 39 341-379 79-118 (129)
419 3p32_A Probable GTPase RV1496/ 57.2 67 0.0023 30.4 10.6 17 138-154 81-97 (355)
420 1zd8_A GTP:AMP phosphotransfer 57.2 4.8 0.00016 35.6 2.2 18 137-154 8-25 (227)
421 2cdn_A Adenylate kinase; phosp 57.1 4.2 0.00015 35.1 1.9 19 137-155 21-39 (201)
422 1ry6_A Internal kinesin; kines 56.9 7.4 0.00025 37.3 3.6 19 135-153 82-102 (360)
423 2whx_A Serine protease/ntpase/ 56.9 19 0.00065 37.4 7.0 68 172-251 355-423 (618)
424 3umf_A Adenylate kinase; rossm 56.9 6.3 0.00022 34.8 2.9 19 137-155 30-48 (217)
425 3f9v_A Minichromosome maintena 56.8 5.5 0.00019 41.3 2.9 15 138-152 329-343 (595)
426 2zan_A Vacuolar protein sortin 56.7 5.7 0.0002 39.4 2.9 56 96-154 128-185 (444)
427 2iut_A DNA translocase FTSK; n 56.6 16 0.00053 37.4 6.1 41 137-181 215-255 (574)
428 2plr_A DTMP kinase, probable t 56.3 4.4 0.00015 35.1 1.9 20 136-155 4-23 (213)
429 2iyv_A Shikimate kinase, SK; t 56.2 7.7 0.00026 32.8 3.4 19 137-155 3-21 (184)
430 4a74_A DNA repair and recombin 55.9 4.9 0.00017 35.4 2.1 20 135-154 24-43 (231)
431 2pez_A Bifunctional 3'-phospho 55.8 4.9 0.00017 33.9 2.0 19 136-154 5-23 (179)
432 1qf9_A UMP/CMP kinase, protein 55.6 6.8 0.00023 33.2 2.9 17 138-154 8-24 (194)
433 2v3c_C SRP54, signal recogniti 55.6 7.7 0.00026 38.3 3.6 19 137-155 100-118 (432)
434 1aky_A Adenylate kinase; ATP:A 55.5 7.4 0.00025 34.1 3.2 20 136-155 4-23 (220)
435 2jaq_A Deoxyguanosine kinase; 55.5 8 0.00028 33.1 3.4 17 138-154 2-18 (205)
436 1zak_A Adenylate kinase; ATP:A 55.3 7.5 0.00026 34.2 3.2 19 137-155 6-24 (222)
437 1nij_A Hypothetical protein YJ 55.3 8.1 0.00028 36.3 3.6 14 139-152 7-20 (318)
438 3rc3_A ATP-dependent RNA helic 55.3 26 0.0009 36.7 7.8 73 175-258 323-401 (677)
439 2pt5_A Shikimate kinase, SK; a 55.1 5.7 0.00019 33.0 2.3 17 138-154 2-18 (168)
440 1ukz_A Uridylate kinase; trans 55.0 5.6 0.00019 34.3 2.3 16 138-153 17-32 (203)
441 1q57_A DNA primase/helicase; d 55.0 7.9 0.00027 39.1 3.7 38 136-180 242-279 (503)
442 1g8p_A Magnesium-chelatase 38 54.8 3.8 0.00013 38.9 1.2 19 136-154 45-63 (350)
443 2k0z_A Uncharacterized protein 54.4 21 0.00071 27.3 5.3 39 341-379 53-91 (110)
444 1jjv_A Dephospho-COA kinase; P 54.3 5.8 0.0002 34.4 2.3 16 138-153 4-19 (206)
445 3k1j_A LON protease, ATP-depen 54.2 11 0.00037 39.1 4.6 23 132-154 56-78 (604)
446 3cmw_A Protein RECA, recombina 53.9 14 0.00049 42.9 5.9 38 136-181 34-71 (1706)
447 3lnc_A Guanylate kinase, GMP k 53.9 5.5 0.00019 35.3 2.1 19 134-152 25-43 (231)
448 4db1_A Myosin-7; S1DC, cardiac 53.7 13 0.00043 39.7 5.1 65 97-162 124-196 (783)
449 2wwf_A Thymidilate kinase, put 53.5 6.5 0.00022 34.1 2.5 21 135-155 9-29 (212)
450 1cke_A CK, MSSA, protein (cyti 53.3 7.7 0.00026 34.1 3.0 18 137-154 6-23 (227)
451 3b9q_A Chloroplast SRP recepto 53.3 12 0.00042 34.8 4.5 17 136-152 100-116 (302)
452 1ye8_A Protein THEP1, hypothet 53.1 8.2 0.00028 32.8 3.0 15 138-152 2-16 (178)
453 3c8u_A Fructokinase; YP_612366 53.1 6.9 0.00024 34.0 2.6 17 136-152 22-38 (208)
454 2if2_A Dephospho-COA kinase; a 53.1 6.2 0.00021 34.1 2.2 16 138-153 3-18 (204)
455 3asz_A Uridine kinase; cytidin 52.9 5.7 0.0002 34.5 2.0 18 136-153 6-23 (211)
456 1qxn_A SUD, sulfide dehydrogen 52.8 13 0.00046 29.8 4.1 40 340-379 78-118 (137)
457 2pbr_A DTMP kinase, thymidylat 52.8 6.4 0.00022 33.5 2.3 17 139-155 3-19 (195)
458 1htw_A HI0065; nucleotide-bind 52.7 7.8 0.00027 32.2 2.7 18 135-152 32-49 (158)
459 1lkx_A Myosin IE heavy chain; 52.6 12 0.00042 39.2 4.7 70 93-163 43-120 (697)
460 1g41_A Heat shock protein HSLU 52.6 8.2 0.00028 38.2 3.2 19 136-154 50-68 (444)
461 3vkg_A Dynein heavy chain, cyt 52.6 32 0.0011 42.8 8.7 48 107-155 874-925 (3245)
462 2f3j_A RNA and export factor b 52.5 33 0.0011 28.9 6.8 7 48-54 67-73 (177)
463 1nn5_A Similar to deoxythymidy 52.4 7 0.00024 33.9 2.5 21 135-155 8-28 (215)
464 3bs4_A Uncharacterized protein 52.0 15 0.0005 33.5 4.6 52 136-196 21-72 (260)
465 3zq6_A Putative arsenical pump 52.0 14 0.00047 34.8 4.7 34 139-180 17-50 (324)
466 3l9o_A ATP-dependent RNA helic 52.0 15 0.0005 41.2 5.5 71 337-418 220-296 (1108)
467 2i3b_A HCR-ntpase, human cance 51.9 10 0.00034 32.6 3.4 41 244-287 103-145 (189)
468 1e4v_A Adenylate kinase; trans 51.8 8.4 0.00029 33.6 2.9 18 138-155 2-19 (214)
469 2z0h_A DTMP kinase, thymidylat 51.8 6.8 0.00023 33.5 2.3 17 139-155 3-19 (197)
470 2ce7_A Cell division protein F 51.7 6.3 0.00021 39.5 2.2 18 137-154 50-67 (476)
471 1w7j_A Myosin VA; motor protei 51.6 14 0.00049 39.4 5.1 70 93-163 105-182 (795)
472 3tif_A Uncharacterized ABC tra 51.4 6.3 0.00021 35.3 2.0 17 135-151 30-46 (235)
473 2qt1_A Nicotinamide riboside k 51.3 8.7 0.0003 33.2 2.9 19 135-153 20-38 (207)
474 2vli_A Antibiotic resistance p 51.3 5.1 0.00018 33.8 1.4 20 136-155 5-24 (183)
475 2xb4_A Adenylate kinase; ATP-b 51.2 6.9 0.00024 34.5 2.3 18 138-155 2-19 (223)
476 3be4_A Adenylate kinase; malar 51.0 9.5 0.00033 33.4 3.2 19 137-155 6-24 (217)
477 1w9i_A Myosin II heavy chain; 50.8 15 0.00052 39.0 5.1 65 97-162 125-197 (770)
478 3a4m_A L-seryl-tRNA(SEC) kinas 50.8 6.9 0.00024 35.5 2.3 18 138-155 6-23 (260)
479 2v9p_A Replication protein E1; 50.8 8.4 0.00029 36.0 2.9 18 135-152 125-142 (305)
480 1g8x_A Myosin II heavy chain f 50.7 19 0.00064 39.7 6.0 65 97-162 125-197 (1010)
481 1byi_A Dethiobiotin synthase; 50.6 17 0.00058 31.7 4.8 33 140-180 6-38 (224)
482 3qf7_A RAD50; ABC-ATPase, ATPa 50.5 9.6 0.00033 36.7 3.3 16 138-153 25-40 (365)
483 3pxi_A Negative regulator of g 50.4 20 0.00067 38.3 6.1 25 136-161 201-225 (758)
484 4gl2_A Interferon-induced heli 50.2 3.7 0.00013 43.4 0.3 70 345-418 57-142 (699)
485 4h1g_A Maltose binding protein 50.0 12 0.0004 39.8 4.1 24 129-152 454-479 (715)
486 1uf9_A TT1252 protein; P-loop, 49.7 9.6 0.00033 32.6 2.9 17 138-154 10-26 (203)
487 2fsx_A RV0390, COG0607: rhodan 49.5 20 0.00068 29.1 4.7 38 342-379 78-116 (148)
488 3mm4_A Histidine kinase homolo 49.3 1.2E+02 0.0041 25.7 12.2 128 134-287 18-161 (206)
489 1c9k_A COBU, adenosylcobinamid 49.2 12 0.00041 31.9 3.3 43 139-193 2-44 (180)
490 2woo_A ATPase GET3; tail-ancho 49.2 16 0.00055 34.5 4.6 32 139-178 22-53 (329)
491 1nkt_A Preprotein translocase 49.0 48 0.0016 35.7 8.5 71 342-418 150-237 (922)
492 3qks_A DNA double-strand break 49.0 12 0.0004 32.6 3.3 15 138-152 25-39 (203)
493 3auy_A DNA double-strand break 49.0 10 0.00036 36.5 3.3 14 139-152 28-41 (371)
494 2f1r_A Molybdopterin-guanine d 48.9 6.4 0.00022 33.3 1.6 17 138-154 4-20 (171)
495 3tlx_A Adenylate kinase 2; str 48.8 9.9 0.00034 34.1 3.0 20 136-155 29-48 (243)
496 3sxu_A DNA polymerase III subu 48.8 62 0.0021 26.4 7.6 115 329-469 23-143 (150)
497 3ug7_A Arsenical pump-driving 48.8 16 0.00056 34.8 4.6 33 139-179 29-61 (349)
498 3tqc_A Pantothenate kinase; bi 48.6 30 0.001 32.4 6.4 23 139-163 95-117 (321)
499 2vhj_A Ntpase P4, P4; non- hyd 48.6 9.9 0.00034 35.8 2.9 24 136-159 123-146 (331)
500 2og2_A Putative signal recogni 48.4 16 0.00054 35.0 4.5 37 135-179 156-192 (359)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-70 Score=560.13 Aligned_cols=389 Identities=41% Similarity=0.708 Sum_probs=360.2
Q ss_pred CceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCC
Q 010649 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (505)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 165 (505)
.+.+.+.+.|.|+.+|+++++++.+++++.++||.+|+|+|.++|+.++++++++++||||||||++|++|++.++...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccC
Q 010649 166 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR 245 (505)
Q Consensus 166 ~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~ 245 (505)
......++++|||+||++||.|+++++.+++...++++.+++|+.....+...+..+++|+|+||++|.+++.+....+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 43344578899999999999999999999998888999999999998888888888999999999999999998888899
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhc--CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeee
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 323 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (505)
++++||+||||++++++|...+..++..+ ++++|+++||||+|+.+..++..++.++..+.+.... .....+.+.+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 99999999999999999999999999885 5789999999999999999999999999888877654 45566788888
Q ss_pred ccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 324 IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
.+....|...+.+++..... ++||||++++.|+.+++.|++.++++..+||++++.+|..++++|++|+.+|||||++
T Consensus 282 ~~~~~~k~~~l~~~l~~~~~--~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp ECCGGGHHHHHHHHHHHCCT--TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred EeCcHHHHHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh
Confidence 88889999999999987543 4999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecC-ccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010649 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSPELAAM 477 (505)
Q Consensus 404 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~i~~~l~~~ 477 (505)
+++|+|+|++++||+||+|.++++|+||+||+||.|+.|.|++|+++ .+...+.++.+++++++|++|++|.+|
T Consensus 360 ~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999999994 578899999999999999999999765
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.2e-64 Score=511.41 Aligned_cols=396 Identities=45% Similarity=0.717 Sum_probs=357.8
Q ss_pred CceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCC
Q 010649 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (505)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 165 (505)
.+.+.+.++|.++.+|+++++++.+++++...+|.+|+|+|.++|+.++++++++++||||+|||++|++|++.++....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CC-------------CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHH
Q 010649 166 FL-------------APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (505)
Q Consensus 166 ~~-------------~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~ 232 (505)
.. ....++++|||+||++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11224789999999999999999999998888899999999998888888888889999999999
Q ss_pred HHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc--CC--CCceEEecCCChHHHHHHHHHHccCCcEEEEc
Q 010649 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (505)
Q Consensus 233 l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~--~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (505)
|.+++......+.++++||+||||++.+.+|...+..++... ++ ..|++++|||+++.+..++..++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999999888888999999999999999999999999998753 22 67899999999999999999999988877765
Q ss_pred CCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHH
Q 010649 309 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 388 (505)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~ 388 (505)
... .....+.+.+..+....+...+.+++.......++||||++++.++.+++.|++.++.+..+||++++.+|..+++
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 242 RVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 543 3455677777778888999999999988767789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCC
Q 010649 389 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (505)
Q Consensus 389 ~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (505)
.|++|+.+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+.+..+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcCCC
Q 010649 469 KVSPELAAMGRGAP 482 (505)
Q Consensus 469 ~i~~~l~~~~~~~~ 482 (505)
++|.+|.+|+....
T Consensus 401 ~~~~~l~~~~~~~~ 414 (417)
T 2i4i_A 401 EVPSWLENMAYEHH 414 (417)
T ss_dssp CCCHHHHHHHTCSC
T ss_pred cCCHHHHHHHHhhh
Confidence 99999999998764
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.3e-60 Score=482.27 Aligned_cols=374 Identities=33% Similarity=0.572 Sum_probs=334.7
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 010649 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (505)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (505)
..+.+..+|+++++++.+++.+...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 344567789999999999999999999999999999999999999999999999999999999999876532 236
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEE
Q 010649 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (505)
Q Consensus 173 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVl 252 (505)
+++|||+||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 78999999999999999999999988899999999999888888888888999999999999999988888899999999
Q ss_pred cCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC-hhHHH
Q 010649 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKY 331 (505)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 331 (505)
||||++.+.+|...+..++..+++..|++++|||++..+.++...++.+|..+...... .....+.+.+..+. ...+.
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHH
T ss_pred ccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999999999999999999999998888888888877655443 23344555554444 44588
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
..+.+++.... ..++||||++++.++.+++.|++.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 265 ~~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 265 DTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 88888887764 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHH
Q 010649 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE 473 (505)
Q Consensus 412 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~ 473 (505)
++++||++|+|+++..|+||+||+||.|+.|.+++|+++.+...++++.+.+...-.++|..
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999999998888877666666543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.5e-59 Score=473.84 Aligned_cols=380 Identities=31% Similarity=0.551 Sum_probs=322.2
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 010649 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (505)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 171 (505)
...+....+|+++++++.+++.+.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3456667889999999999999999999999999999999999999999999999999999999999887542 23
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
++++||++|+++|+.|+.+.+.+++...++.+..++|+.........+. ..++|+|+||++|.+.+......+.++++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6679999999999999999999998888889999999988777776665 678999999999999998888888899999
Q ss_pred EEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHH
Q 010649 251 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 330 (505)
Q Consensus 251 VlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (505)
|+||||++.+.+|...+..++..++++.|+++||||++..+..+...++.++..+........................+
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH
Confidence 99999999999999999999999999999999999999999999999999988877665553333333333344445568
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 010649 331 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (505)
Q Consensus 331 ~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi 410 (505)
...+.+++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 268 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 268 LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc
Confidence 88888888765 44689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010649 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 477 (505)
Q Consensus 411 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~ 477 (505)
|++++||++++|+++.+|+||+||+||.|+.|.|++|+++.+...++.+.+++.....++|..+.++
T Consensus 347 p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 347 QQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999999999999999999999999999988888888887765
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.9e-58 Score=464.76 Aligned_cols=374 Identities=30% Similarity=0.507 Sum_probs=331.9
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010649 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (505)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (505)
+.+..+|+++++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3445789999999999999999999999999999999999999999999999999999999999886542 23567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcC
Q 010649 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (505)
Q Consensus 175 vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDE 254 (505)
+||++|+++|+.|+.+.+.++....++.+..++|+.....+...+...++|+|+||++|.+++......+.++++||+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999998888999999999887777777778899999999999999888777889999999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHH
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (505)
||++.+..|...+..++..+++..+++++|||++..+..+...++..+..+..... .....+.+.+.......+...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHH
Confidence 99999888888999999999889999999999999999999999888876544332 3345566777777788888888
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCC
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 414 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~ 414 (505)
..++... ..+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 8888764 456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHH
Q 010649 415 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAA 476 (505)
Q Consensus 415 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~ 476 (505)
+||++++|+++.+|+||+||+||.|+.|.|++|+++.+...++.+.+.+....+++|.++.+
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999999988888888776666666655443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.2e-57 Score=458.53 Aligned_cols=369 Identities=28% Similarity=0.514 Sum_probs=326.5
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
.+|+++++++.+++.+...||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999876542 235679999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcC-CcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
+|+++|+.||.+++.++.... ++++..++|+.........+..+ ++|+|+||++|.+++......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999997665 68899999998876666655544 7999999999999998877788999999999999
Q ss_pred hhhcC-CCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHH
Q 010649 257 RMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (505)
Q Consensus 257 ~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (505)
++.+. ++...+..++...++..|++++|||+++.+..++..++.++..+............+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67788888888888899999999999999999999999999888766654444556677777778888888998
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCE
Q 010649 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~ 415 (505)
+++... ..+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888775 5579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc-cHHHHHHHHHHHHHhCCCCCHH
Q 010649 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPE 473 (505)
Q Consensus 416 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~i~~~ 473 (505)
||++++|+++..|+||+||+||.|+.|.+++++++. +..++..+.+.+....+++|.+
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999976 4456777777666555666654
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.8e-57 Score=479.24 Aligned_cols=357 Identities=32% Similarity=0.495 Sum_probs=300.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (505)
+++.+++.+...||..|+|+|.++++.++ .+++++++||||+|||++|++|++.++...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998875422 223568999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEECCCCchHHHHHH-hcCCcEEEeChHHHHHHHHcc-CCccCCccEEEEcCcch
Q 010649 184 LAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 257 (505)
Q Consensus 184 La~Q~~~~~~~~~~----~~~i~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lVlDEah~ 257 (505)
||.|+++.+.++.. ...+.+..++|+.....+...+ ..+++|+|+||++|.+++.+. ...+.++++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998643 2346688889998877776666 447899999999999988764 33578899999999999
Q ss_pred hhcCCCHHHHHHHHHhcC-------CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCC---cccccceeeeeeccCh
Q 010649 258 MLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKANHAIRQHVDIVSE 327 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 327 (505)
+++++|.+.+..++..++ +..|+++||||+++.+..++..++.++..+.+.... ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999998877653 377999999999999999999999888776654322 1223334444443332
Q ss_pred -hHH----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 328 -SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 328 -~~k----~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
..+ ...+...+.......++||||++++.|+.++..|++. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 222 2333334444455679999999999999999999876 89999999999999999999999999999999
Q ss_pred EcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHH
Q 010649 400 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 463 (505)
Q Consensus 400 aT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 463 (505)
||+++++|||+|++++||++++|.++.+|+||+||+||.|+.|.|++|+++.+..+++.+.+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988887776653
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.2e-56 Score=443.69 Aligned_cols=355 Identities=37% Similarity=0.608 Sum_probs=318.5
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
..+|+++++++.+++.+.+.++.+|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 467999999999999999999999999999999999988 6899999999999999999988876542 367799
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
|++|+++|+.|+.+.+.++....++.+..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999988766665554 68999999999999998877788999999999999
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHH
Q 010649 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (505)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (505)
++.+.++...+..++..+++..+++++|||++.....+...++.++..+.... ...+.+.+.......+...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887766554322 2345566666777888888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEE
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 416 (505)
++.. ...++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8763 55689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 417 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
|++++|+|+.+|+||+||+||.|+.|.+++++++.+...+..+.+.+...
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999988888877766443
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.5e-58 Score=463.32 Aligned_cols=377 Identities=33% Similarity=0.565 Sum_probs=190.9
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 010649 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (505)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 172 (505)
...++..+|+++++++.+++.+...++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 456677889999999999999999999999999999999999999999999999999999999999887542 236
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEE
Q 010649 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (505)
Q Consensus 173 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVl 252 (505)
+++||++|+++|+.|+.+.+.++....++++..++|+.........+. +++|+|+||++|.+.+......+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999998888899999999987766655544 5899999999999999887778889999999
Q ss_pred cCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccC-hhHHH
Q 010649 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKY 331 (505)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 331 (505)
||||++.+.++...+..++..+++..|++++|||+++.+..+...++.+|..+........ ...+.+.+.... ...+.
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHH
Confidence 9999999999999999999999999999999999999999999999999988776654422 223333333333 33366
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
..+.+++... ...++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 248 ~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 248 ECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 6666666554 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010649 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 477 (505)
Q Consensus 412 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~~~ 477 (505)
++++||++++|+++.+|+||+||+||.|++|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999888888877787766654
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-55 Score=447.84 Aligned_cols=368 Identities=28% Similarity=0.448 Sum_probs=314.8
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 010649 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (505)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 171 (505)
.+.++.+|+++++++.+++.+.+.+|..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3456788999999999999999999999999999999999987 8999999999999999999999887642 23
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cCCccCCccE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTY 249 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~ 249 (505)
++++||++|+++|+.|+.+.+.++.... .+.+....++....... ...++|+|+||++|.+++.. ....+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 5689999999999999999999987653 57777777776543222 34579999999999998865 4566789999
Q ss_pred EEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeee-eccCh
Q 010649 250 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSE 327 (505)
Q Consensus 250 lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 327 (505)
||+||||++.+ .++...+..+...+++..|++++|||+++.+..++..++.++..+.+..... ....+.+.+ .....
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSH
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCCh
Confidence 99999999987 6788899999999999999999999999999999999999888776655442 333444444 44455
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 010649 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~G 407 (505)
..+...+.+++... ...++||||++++.++.++..|++.++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 251 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 251 DEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 329 (412)
T ss_dssp HHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSS
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccC
Confidence 67888888887765 44699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC------ChhHHHHhhcccccCCCccEEEEEecCcc-HHHHHHHHHHHHHhCCCCC
Q 010649 408 LDVKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 471 (505)
Q Consensus 408 idi~~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~i~ 471 (505)
+|+|++++||++++|+ +..+|+||+||+||.|+.|.++++++..+ ...+..+.+.+...-..++
T Consensus 330 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp CCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999999999994 67899999999999999999999998764 6677777777765555444
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.9e-55 Score=443.31 Aligned_cols=356 Identities=31% Similarity=0.533 Sum_probs=307.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (505)
...+|+++++++.+++.+.+.++.+|+|+|.++++.++++ +++++++|||+|||++|++|++.++... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4578999999999999999999999999999999999998 8999999999999999999999887542 23677
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcC
Q 010649 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (505)
Q Consensus 175 vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDE 254 (505)
+||++|+++|+.|+.+.+.+++...++.+...+++...... ...++|+|+||++|.+.+......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888888877544322 33689999999999999988878889999999999
Q ss_pred cchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeee-ccChhHHHH
Q 010649 255 ADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IVSESQKYN 332 (505)
Q Consensus 255 ah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~ 332 (505)
||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+........ ...+.+.+. ......+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHH
Confidence 999988 67888999999999999999999999999999999999988877665544422 233444443 345566777
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 010649 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (505)
Q Consensus 333 ~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~ 412 (505)
.+..++... ...++||||++++.++.+++.|++.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 776666554 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC------ChhHHHHhhcccccCCCccEEEEEecCccH-HHHHHHHHHH
Q 010649 413 VKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA-RFAKELITIL 463 (505)
Q Consensus 413 ~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~-~~~~~l~~~l 463 (505)
+++||++++|+ ++.+|+||+||+||.|+.|.+++|+...+. .....+.+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999987543 4444444443
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-55 Score=467.43 Aligned_cols=365 Identities=32% Similarity=0.484 Sum_probs=305.0
Q ss_pred CCCCCcCC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010649 97 PVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (505)
Q Consensus 97 ~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (505)
+..+|+++ .+++.+++++...||..|+|+|.++++.++ .+++++++||||+|||++|++|++..+...... ..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-ST
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-cc
Confidence 33445544 399999999999999999999999999999 678999999999999999999999998775322 23
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcC----CCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHcc-CCcc
Q 010649 171 DGPIVLVLAPTRELAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH-NTNL 244 (505)
Q Consensus 171 ~~~~vlil~Pt~~La~Q~~~~~~~~~~----~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~-~~~l 244 (505)
.++++|||+||++|+.|+.+++.++.. ...+.+..++|+.....+...+. .+++|+|+||++|.+++... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 367899999999999999999998752 34467888999988877777664 47899999999999988764 3457
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcC-------CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCC---ccc
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKA 314 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 314 (505)
..+++|||||||++++++|.+.+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... ...
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999999999999998887653 377999999999999999999999888776654322 122
Q ss_pred ccceeeeeeccCh-hHH----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHH
Q 010649 315 NHAIRQHVDIVSE-SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWV 386 (505)
Q Consensus 315 ~~~~~~~~~~~~~-~~k----~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~ 386 (505)
...+.+.+..... ..+ ...+...+.......++||||+++..|+.++..|++. ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 3344444443332 222 2333344444355679999999999999999999876 8999999999999999999
Q ss_pred HHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHH
Q 010649 387 LSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (505)
Q Consensus 387 ~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (505)
++.|++|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.|++|+++.+..+++.+.+.
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888777654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.2e-56 Score=459.65 Aligned_cols=373 Identities=29% Similarity=0.470 Sum_probs=179.5
Q ss_pred eecCCCCCC---CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 89 VEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 89 ~~~~~~p~~---~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
+...+.+.| +.+|+++++++.+++.+.+++|..|+|+|.++++.++++ ++++++||||||||++|++|++.++..
T Consensus 79 ~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~ 158 (479)
T 3fmp_B 79 VLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP 158 (479)
T ss_dssp EECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT
T ss_pred ecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh
Confidence 334444444 678999999999999999999999999999999999987 899999999999999999999987754
Q ss_pred CCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC-CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cC
Q 010649 164 QPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HN 241 (505)
Q Consensus 164 ~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~ 241 (505)
. ..++++|||+||++|+.|+.+.+.++... ..+.+....++....... ...++|+|+||++|.+++.+ ..
T Consensus 159 ~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 159 A-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp T-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCC
T ss_pred c-----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCC
Confidence 2 23568999999999999999999988764 356777777765543221 33578999999999999865 45
Q ss_pred CccCCccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceee
Q 010649 242 TNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQ 320 (505)
Q Consensus 242 ~~l~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (505)
..+.++++|||||||++.+ .++...+..++..+++..|++++|||++..+..++..++.++..+.+.... .....+.+
T Consensus 231 ~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 309 (479)
T 3fmp_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQ 309 (479)
T ss_dssp CCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------
T ss_pred cCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCceE
Confidence 5678999999999999987 678888999999999999999999999999999999999998888776654 23334444
Q ss_pred eeeccC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 321 HVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 321 ~~~~~~-~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
.+..+. ...+...+..++... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv 388 (479)
T 3fmp_B 310 YYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 444443 356666676666554 346899999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccCCCCCCCEEEEcCCCC------ChhHHHHhhcccccCCCccEEEEEecCcc-HHHHHHHHHHHHHhCCCCC
Q 010649 400 ATDVAARGLDVKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 471 (505)
Q Consensus 400 aT~~~~~Gidi~~~~~Vi~~~~p~------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~i~ 471 (505)
||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.|++|++..+ ..++..+.+.+...-..++
T Consensus 389 ~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 389 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 999999999999999999999995 56899999999999999999999998765 6667777666655544443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-53 Score=418.10 Aligned_cols=335 Identities=33% Similarity=0.551 Sum_probs=288.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
+++.+.+.+.+.|+..|+|+|.++++.+++++++++.+|||+|||++|++|++.. ++++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998764 45699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHH
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~ 265 (505)
.|+.+.+.+++...++.+..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.+.++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888889999999887766666554 48999999999999988877778899999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCC
Q 010649 266 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 345 (505)
Q Consensus 266 ~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 345 (505)
.+..++...+...+++++|||++..+......++.++..+... .....+.+.+..+....+ .....+.. ....
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHh-CCCC
Confidence 9999999999999999999999999999999998887665322 122333443333333222 22234433 3556
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCCh
Q 010649 346 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 425 (505)
Q Consensus 346 ~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~ 425 (505)
++||||+++++++.+++.|+ .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999999887 57899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHH
Q 010649 426 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 464 (505)
Q Consensus 426 ~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (505)
.+|+||+||+||.|+.|.+++|+. .+....+.+.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999 88888888777654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.8e-52 Score=438.13 Aligned_cols=341 Identities=21% Similarity=0.306 Sum_probs=281.6
Q ss_pred cCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 102 RDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 102 ~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
.++++++.+.+.|+. .||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ..++|||+|
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVisP 92 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVICP 92 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEECS
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEeC
Confidence 357788999999998 69999999999999999999999999999999999999999753 457999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH---H---hcCCcEEEeChHHHH------HHHHccCCccCCcc
Q 010649 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L---QKGVEIVIATPGRLI------DMLESHNTNLRRVT 248 (505)
Q Consensus 181 t~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---~---~~~~~Iiv~T~~~l~------~~l~~~~~~l~~~~ 248 (505)
+++|+.|+.+.+.++ ++.+..+.++......... + ...++|+|+||++|. +.+.. ...+.+++
T Consensus 93 ~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~ 167 (591)
T 2v1x_A 93 LISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFT 167 (591)
T ss_dssp CHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEE
T ss_pred HHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCc
Confidence 999999999999998 4778888888765544322 2 356899999999874 22322 33467899
Q ss_pred EEEEcCcchhhcCC--CHHHHHH--HHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeec
Q 010649 249 YLVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI 324 (505)
Q Consensus 249 ~lVlDEah~~~~~~--~~~~~~~--il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (505)
+|||||||++.+++ |.+.+.. ++....++.++++||||+++.+...+..++..+....+.... ...++...+..
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~ 245 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQ 245 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEE
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEe
Confidence 99999999999987 7776654 444555789999999999999888888877665444333322 12233333322
Q ss_pred c--ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010649 325 V--SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (505)
Q Consensus 325 ~--~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (505)
. ....+...+.+++.......++||||++++.++.++..|+..++.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 23456677777776655677999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHH
Q 010649 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (505)
Q Consensus 403 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 460 (505)
++++|||+|++++||++++|.|++.|+||+||+||.|+.|.|++|+++.|......++
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766655544
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-53 Score=443.66 Aligned_cols=371 Identities=29% Similarity=0.472 Sum_probs=261.3
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCC
Q 010649 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 169 (505)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 169 (505)
.+.|.++..|...++++.+++.+.+.++..|+++|.++++.++++ +++++++|||+|||++|+++++..+...
T Consensus 112 ~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----- 186 (508)
T 3fho_A 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----- 186 (508)
T ss_dssp ---------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----
T ss_pred cccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----
Confidence 344556666777789999999999999999999999999999998 8999999999999999999999887553
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccE
Q 010649 170 GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (505)
Q Consensus 170 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (505)
..++++|||+|+++|+.|+.+.+.+++....+.+...+++.... .....++|+|+||++|.+.+......+.++++
T Consensus 187 ~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 187 VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 23568999999999999999999999877777766665554322 12336899999999999999888888899999
Q ss_pred EEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChh
Q 010649 250 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES 328 (505)
Q Consensus 250 lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (505)
||+||||++.+ .++...+..++..++++.|++++|||+++.+..+...+..++..+.+.....................
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE 342 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH
Confidence 99999999988 67899999999999999999999999999999999999988877765554433222222333333556
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccC
Q 010649 329 QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 408 (505)
Q Consensus 329 ~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gi 408 (505)
.+...+..++... ..+++||||+++++|+.++..|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 6777777766554 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCC------CChhHHHHhhcccccCCCccEEEEEecCc-cHHHHHHHHHHHHHhCCCCCH
Q 010649 409 DVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSP 472 (505)
Q Consensus 409 di~~~~~Vi~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~i~~ 472 (505)
|+|++++||++++| .++.+|+||+||+||.|+.|.+++|+... +...+..+.+.+......++.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 78999999999999999999999999854 556677777766655555554
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.6e-51 Score=422.68 Aligned_cols=341 Identities=21% Similarity=0.343 Sum_probs=276.3
Q ss_pred CCCcCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 99 KSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
.+|+++++++.+.+.+++ .|+..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 89999999999999999999999999999999999999998853 356999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HH-hcCCcEEEeChHHHHHHHHccCCccCCccEEEEc
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlD 253 (505)
|+|+++|+.|+.+.+.+++ +.+..+.++........ .+ ...++|+++||++|............++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999999864 67777777766544322 22 3458999999999853211112234688999999
Q ss_pred CcchhhcCC--CHHHHHHH---HHhcCCCCceEEecCCChHHHHHHHHHHc-cCCcEEEEcCCCcccccceeeeeeccCh
Q 010649 254 EADRMLDMG--FEPQIKKI---LSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (505)
Q Consensus 254 Eah~~~~~~--~~~~~~~i---l~~~~~~~~~v~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (505)
|||++.+++ |.+.+..+ ...+ ++.+++++|||+++.+.......+ .....+...... ..++.. .....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~~--~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNIRY--MLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTEEE--EEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCceEE--EEEeC
Confidence 999999876 66665544 3333 678999999999987765444433 233333333221 222322 22334
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccccc
Q 010649 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~G 407 (505)
..+...+.+++... .+.++||||++++.++.++..|+..++.+..+||++++++|..+++.|++|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 55677788888765 55689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 408 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
||+|++++||++++|.|++.|+||+||+||.|+.|.|++|+++.|....+.++.
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888766655544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.6e-50 Score=409.78 Aligned_cols=327 Identities=24% Similarity=0.290 Sum_probs=265.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
.+.+.+++....+|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ++++|||+||++|+.|+
T Consensus 9 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHHH
Confidence 3444555533448999999999999999999999999999999999988876532 67899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEECCCCc---hHHHHHHhcC-CcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhc----
Q 010649 189 QQESTKFGASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---- 260 (505)
Q Consensus 189 ~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~---- 260 (505)
.+.+.+++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.+
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999987 78999999999887 5556666665 99999999999887764 5567899999999987653
Q ss_pred -------CCCHHH-HHHHHHhcC-----------CCCceEEecCC-ChHHHH-HHHHHHccCCcEEEEcCCCccccccee
Q 010649 261 -------MGFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIR 319 (505)
Q Consensus 261 -------~~~~~~-~~~il~~~~-----------~~~~~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (505)
++|.+. +..++..++ +..|++++||| +|..+. .+...++. +.+.... .....+.
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~ 232 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNIT 232 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccch
Confidence 677777 788888776 88999999999 665444 33333332 1111111 2334455
Q ss_pred eeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeE-EEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010649 320 QHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIM 398 (505)
Q Consensus 320 ~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~r~~~~~~f~~g~~~vL 398 (505)
+.+... .+...+.+++... +.++||||+++..|+.++..|+..++.+. .+||. +|. ++.|++|+++||
T Consensus 233 ~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 233 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred heeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 555444 4556667777763 37899999999999999999999999998 89994 444 999999999999
Q ss_pred EE----cccccccCCCCC-CCEEEEcCCC--CChhHHHHhhcccccCC----CccEEEEEecCccHHHHHHHHHHHH
Q 010649 399 TA----TDVAARGLDVKD-VKYVINYDFP--GSLEDYVHRIGRTGRAG----AKGTAYTFFTAANARFAKELITILE 464 (505)
Q Consensus 399 Va----T~~~~~Gidi~~-~~~Vi~~~~p--~s~~~~~Qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (505)
|| |+++++|+|+|+ +++||++|+| .++.+|+||+||+||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 99999999999999988 479999999 67777788887777
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-48 Score=410.84 Aligned_cols=331 Identities=21% Similarity=0.253 Sum_probs=208.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
+..+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+.+.+++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999999999999999998887643 22367799999999999999999999988
Q ss_pred CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC-ccCCccEEEEcCcchhhcCCCHHHH-HHHHHh-c
Q 010649 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ-I 274 (505)
Q Consensus 198 ~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lVlDEah~~~~~~~~~~~-~~il~~-~ 274 (505)
..++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+....+ ..++.. +
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999887777777777899999999999999988776 7889999999999999887643333 222222 1
Q ss_pred ---CCCCceEEecCCChH-----------HHHHHHHHH------------------ccCCcEEEEcCCCccccc------
Q 010649 275 ---RPDRQTLYWSATWPK-----------EVEHLARQY------------------LYNPYKVIIGSPDLKANH------ 316 (505)
Q Consensus 275 ---~~~~~~v~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~------ 316 (505)
.+..++++||||++. .+..+...+ ...|..............
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 467899999999842 222222221 122222211111000000
Q ss_pred ----c---------------------e-----eeee--------------------------------------------
Q 010649 317 ----A---------------------I-----RQHV-------------------------------------------- 322 (505)
Q Consensus 317 ----~---------------------~-----~~~~-------------------------------------------- 322 (505)
. . .+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0000
Q ss_pred ---------------------------------------------eccChhHHHHHHHHHHHhh---cCCCeEEEEeCCc
Q 010649 323 ---------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTK 354 (505)
Q Consensus 323 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~vlVF~~~~ 354 (505)
.......|...|.++|.+. ....++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0001245677777777654 4567999999999
Q ss_pred ccHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCCCEEEEcCC
Q 010649 355 KGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDF 421 (505)
Q Consensus 355 ~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~ 421 (505)
..++.+++.|++. |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 4455567888999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 422 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 422 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999 999 88999999998754
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.9e-48 Score=422.01 Aligned_cols=341 Identities=22% Similarity=0.300 Sum_probs=229.6
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010649 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (505)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 191 (505)
..+...|+.+|+|+|.++++.+++++++|+++|||+|||++|++|++.++...+ ...++++|||+||++|+.||.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999998887643 12236799999999999999999
Q ss_pred HHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC-ccCCccEEEEcCcchhhcCC-CHHHHHH
Q 010649 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKK 269 (505)
Q Consensus 192 ~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lVlDEah~~~~~~-~~~~~~~ 269 (505)
+.+++...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.... +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988888999999999877666777777899999999999999988766 68899999999999988654 2222222
Q ss_pred HHHh-----cCCCCceEEecCCCh--------HHHHHHHHH---------------------HccCCcEEEEcCCCccc-
Q 010649 270 ILSQ-----IRPDRQTLYWSATWP--------KEVEHLARQ---------------------YLYNPYKVIIGSPDLKA- 314 (505)
Q Consensus 270 il~~-----~~~~~~~v~~SAT~~--------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~- 314 (505)
.+.. ..+.+++++||||+. ..+..+... +...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 3322 246789999999986 122222111 11122111110000000
Q ss_pred --------------------------------------------------------------------------------
Q 010649 315 -------------------------------------------------------------------------------- 314 (505)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (505)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------ccceeeeee----------------ccChhHHHHHHHHHHHhhc---CCCe
Q 010649 315 -----------------------------NHAIRQHVD----------------IVSESQKYNKLVKLLEDIM---DGSR 346 (505)
Q Consensus 315 -----------------------------~~~~~~~~~----------------~~~~~~k~~~l~~~l~~~~---~~~~ 346 (505)
...+.+.+. ......|...|.+++.... ++.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 0013457777888887752 4569
Q ss_pred EEEEeCCcccHHHHHHHHHhCC----CCeEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCC
Q 010649 347 ILIFMDTKKGCDQITRQLRMDG----WPALSI--------HGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDV 413 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gidi~~~ 413 (505)
+||||+++..++.+++.|+..+ +.+..+ |++|++.+|..++++|++ |+.+|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHH
Q 010649 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 457 (505)
Q Consensus 414 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 457 (505)
++||+||+|+|+++|+||+|| ||. +.|.++++++..+.....
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 999999999999999999999 998 789999999987664433
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.7e-48 Score=405.51 Aligned_cols=375 Identities=18% Similarity=0.232 Sum_probs=287.8
Q ss_pred CCCCCCCccccccccCccccCCCHHHHHHHHHhcCcee-ecCCCCCCCCCCcCCCCCHHHHHHHH--------HcCCCCC
Q 010649 52 DLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEIS--------KAGFFEP 122 (505)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~~~l~--------~~~~~~~ 122 (505)
....+.+.-+.+....+.+..+|++++.....+....+ .+.. +++.+.+++. ..|+ .|
T Consensus 18 ~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~------------ld~~l~ea~a~vrea~~r~lG~-~p 84 (844)
T 1tf5_A 18 TLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT------------TDDLLVEAFAVVREASRRVTGM-FP 84 (844)
T ss_dssp CCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 44445555666777788999999999977666533322 2221 2222223322 4799 99
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~ 202 (505)
+|+|..++|.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+||++||.|.++++..++...+++
T Consensus 85 t~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~ 154 (844)
T 1tf5_A 85 FKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLT 154 (844)
T ss_dssp CHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 999999999999998 999999999999999999866543 5679999999999999999999999888999
Q ss_pred EEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc------CCccCCccEEEEcCcchhh-cCC------------
Q 010649 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG------------ 262 (505)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~~------------ 262 (505)
+.+++||.+... +....+++|+|+||++| .+++... ...++.+.++||||||+|+ |++
T Consensus 155 v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~ 232 (844)
T 1tf5_A 155 VGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAK 232 (844)
T ss_dssp EEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEC
T ss_pred EEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCccc
Confidence 999999987543 34445799999999999 6666542 3567889999999999998 664
Q ss_pred ---CHHHHHHHHHhcC---------CCCceE-----------------EecCCChH---HHHHHH--HHHcc-CCcEEE-
Q 010649 263 ---FEPQIKKILSQIR---------PDRQTL-----------------YWSATWPK---EVEHLA--RQYLY-NPYKVI- 306 (505)
Q Consensus 263 ---~~~~~~~il~~~~---------~~~~~v-----------------~~SAT~~~---~~~~~~--~~~~~-~~~~~~- 306 (505)
|...+..++..++ +.+|++ ++|||.+. .+...+ ..++. +...+.
T Consensus 233 ~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~ 312 (844)
T 1tf5_A 233 STKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVE 312 (844)
T ss_dssp CCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEE
T ss_pred chhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEe
Confidence 6788999999986 367887 89999874 333332 22221 111110
Q ss_pred ------EcCC----------------------------Cccccccee---------------------------------
Q 010649 307 ------IGSP----------------------------DLKANHAIR--------------------------------- 319 (505)
Q Consensus 307 ------~~~~----------------------------~~~~~~~~~--------------------------------- 319 (505)
+... +......+.
T Consensus 313 dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~v 392 (844)
T 1tf5_A 313 DGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQV 392 (844)
T ss_dssp TTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCE
T ss_pred cCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCce
Confidence 0000 000000000
Q ss_pred --------------eeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHH
Q 010649 320 --------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD 384 (505)
Q Consensus 320 --------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~ 384 (505)
+.+.......|...+.+.+.+. ..+.++||||+|++.++.|+..|+..|+++.++||++.+.+|.
T Consensus 393 v~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ 472 (844)
T 1tf5_A 393 VTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQ 472 (844)
T ss_dssp EECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHH
T ss_pred EEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHH
Confidence 1133446778899999888764 3556899999999999999999999999999999999888888
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCC--------CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 385 WVLSEFKAGKSPIMTATDVAARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gidi~--------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
.+.++|+.| .|+|||++++||+||+ ++.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 473 ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 473 IIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 777667655 6999999999999999 788999999999999999999999999999999999998764
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-47 Score=410.23 Aligned_cols=338 Identities=21% Similarity=0.245 Sum_probs=266.8
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
..+|+++++|+.+.+.++..||.+|+|+|.++++. +.++++++++||||||||++|.++++..+... +.+++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 77899999999999999999999999887742 57899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcc
Q 010649 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah 256 (505)
|++|+++||.|+.+.++.+. ..++++..++|+....... ...++|+|+||++|..++......+.++++||+||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999996554 3468888888887654432 2368999999999999888866668999999999999
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccce--------eeeeeccC--
Q 010649 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAI--------RQHVDIVS-- 326 (505)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-- 326 (505)
.+.+..+...++.++..++ +.|+|+||||+++ ...++..+. .+.......+. .....+ ...+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEPVATNWRPV-PLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEEEECCCCSS-CEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCccCCCCCCC-CceEEEEecCCcccceeeecCcch
Confidence 9998888999999988886 8999999999975 455555443 22110000000 000000 00011111
Q ss_pred ------hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC--------------------------------
Q 010649 327 ------ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-------------------------------- 368 (505)
Q Consensus 327 ------~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~-------------------------------- 368 (505)
...+...+.+.+ .+++++||||+++++++.++..|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 133334444333 356799999999999999999998642
Q ss_pred ----CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cC-------CCCChhHHHHhhc
Q 010649 369 ----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-------FPGSLEDYVHRIG 433 (505)
Q Consensus 369 ----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~-------~p~s~~~~~Qr~G 433 (505)
..+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 24889999999999999999999999999999999999999999999999 98 7999999999999
Q ss_pred ccccCCC--ccEEEEEecCccH
Q 010649 434 RTGRAGA--KGTAYTFFTAANA 453 (505)
Q Consensus 434 R~~R~g~--~g~~~~~~~~~~~ 453 (505)
||||.|. .|.|+++++..+.
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGG
T ss_pred hcCCCCCCCCceEEEEeCCchH
Confidence 9999884 6999999987753
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.3e-47 Score=415.63 Aligned_cols=332 Identities=19% Similarity=0.226 Sum_probs=270.2
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
+|+++++|+.+.+.+++.||.+|+|+|.++++. +.+++++++++|||||||++|.+|++..+... +.+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88899999999999999999999999887742 5789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~ 258 (505)
+|+++|+.|+++.++++.. .++++..++|+....... ...++|+|+||++|..++......+.++++||+||||.+
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976643 468899999976654331 246899999999999988876666889999999999999
Q ss_pred hcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeee------eeccC-----h
Q 010649 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH------VDIVS-----E 327 (505)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~ 327 (505)
.+..+...+..++..++.+.|+|+||||+++ ...++..+ ..+. +. ... ....+... +.... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~-~~~---rp~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IV-SDW---RPVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EE-CCC---CSSEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cC-CCC---CCCcceEEEEeCCeeeccccchhhh
Confidence 9988999999999988778999999999976 45555543 2211 11 000 00011110 11111 1
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---------------------------------CCCeEEE
Q 010649 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSI 374 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~l 374 (505)
..+...+.+.+. +++++||||++++.|+.++..|.+. ...+..+
T Consensus 224 ~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 233344444433 4679999999999999999998753 1248999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cC----CCCChhHHHHhhcccccCC--CccEE
Q 010649 375 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD----FPGSLEDYVHRIGRTGRAG--AKGTA 444 (505)
Q Consensus 375 hg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~----~p~s~~~~~Qr~GR~~R~g--~~g~~ 444 (505)
||++++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.| ..|.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 380 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEG 380 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999998 66 5889999999999999998 46999
Q ss_pred EEEecCcc
Q 010649 445 YTFFTAAN 452 (505)
Q Consensus 445 ~~~~~~~~ 452 (505)
++++++.+
T Consensus 381 ~~l~~~~~ 388 (720)
T 2zj8_A 381 IIVSTSDD 388 (720)
T ss_dssp EEECSSSC
T ss_pred EEEecCcc
Confidence 99999877
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-47 Score=403.46 Aligned_cols=334 Identities=22% Similarity=0.291 Sum_probs=237.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+++.+++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999999887643 1236679999999999999999999998888
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC-ccCCccEEEEcCcchhhcCCC-HHHHHHHHHhc---
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQI--- 274 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lVlDEah~~~~~~~-~~~~~~il~~~--- 274 (505)
++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+. ...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999987777777777899999999999999988766 788999999999999988752 22232333332
Q ss_pred --CCCCceEEecCCChH-----------HHHHHHHHHc------------------cCCcEEEEcCCCccccccee----
Q 010649 275 --RPDRQTLYWSATWPK-----------EVEHLARQYL------------------YNPYKVIIGSPDLKANHAIR---- 319 (505)
Q Consensus 275 --~~~~~~v~~SAT~~~-----------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 319 (505)
.+.++++++|||++. .+..+...+. ..+.......... ......
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc-ccChHHHHHH
Confidence 256799999999843 1222222111 1111111100000 000000
Q ss_pred ----------------------------------ee--------------------------------------------
Q 010649 320 ----------------------------------QH-------------------------------------------- 321 (505)
Q Consensus 320 ----------------------------------~~-------------------------------------------- 321 (505)
+.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred ---------------------------------------------eeccChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 010649 322 ---------------------------------------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (505)
Q Consensus 322 ---------------------------------------------~~~~~~~~k~~~l~~~l~~~---~~~~~vlVF~~~ 353 (505)
........|...+.++|... .+..++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00001245667777777664 345799999999
Q ss_pred cccHHHHHHHHHhCC----C--------CeEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCCCEEEEcC
Q 010649 354 KKGCDQITRQLRMDG----W--------PALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 420 (505)
Q Consensus 354 ~~~~~~l~~~L~~~~----~--------~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~Vi~~~ 420 (505)
+..++.++..|+..+ + ....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998763 3 34455679999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHH
Q 010649 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 459 (505)
Q Consensus 421 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 459 (505)
+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 999 89999999998866554433
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-47 Score=422.18 Aligned_cols=330 Identities=16% Similarity=0.204 Sum_probs=264.2
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
..|..+++++.+...+.....+.|+|+|.++|+.++.+++++++||||||||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666677776666666677889999999999999999999999999999999999999988754 6789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh
Q 010649 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~ 258 (505)
+||++|+.|+++.+.+++. .+..++|+... ...++|+|+||++|.+++......+.++++|||||||++
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 9999999999999999775 56678887764 346899999999999999888777889999999999999
Q ss_pred hcCCCHHHHHHHHHhcCCCCceEEecCCChHH--HHHHHHHHccCCcEEEEcCCCcccccceeeeee---------ccCh
Q 010649 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKE--VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD---------IVSE 327 (505)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 327 (505)
.+.+|...+..++..+++..|+|+||||+|+. +..+.......+..+........ .+...+. .+..
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~---pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT---PLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS---CEEEEEEETTSSCCEEEEET
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc---cceEEEeecCCcceeeeecc
Confidence 99999999999999999999999999999764 44556666666665554332211 1111110 0000
Q ss_pred ----------------------------------------------hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 010649 328 ----------------------------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (505)
Q Consensus 328 ----------------------------------------------~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~ 361 (505)
..++..++..+... ...++||||+++..|+.++
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHH
Confidence 22233333333332 3458999999999999999
Q ss_pred HHHHhCCCC---------------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010649 362 RQLRMDGWP---------------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (505)
Q Consensus 362 ~~L~~~~~~---------------------------------------~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (505)
..|...++. +..+||+|++.+|..+++.|++|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 998653222 78999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCC--------CChhHHHHhhcccccCC--CccEEEEEecCc
Q 010649 403 VAARGLDVKDVKYVINYDFP--------GSLEDYVHRIGRTGRAG--AKGTAYTFFTAA 451 (505)
Q Consensus 403 ~~~~Gidi~~~~~Vi~~~~p--------~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~ 451 (505)
++++|||+|++++||+++.| .|+.+|+||+|||||.| ..|.|++++.+.
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999987764 36778999999999999 578888888776
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-47 Score=413.31 Aligned_cols=332 Identities=18% Similarity=0.271 Sum_probs=264.8
Q ss_pred CCcCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 100 SFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 100 ~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
+|++++ +++.+.+.++..+|.+|+|+|.++++.+++++++++++|||||||++|.++++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577787 8999999999999999999999999999999999999999999999999999988764 567999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
++|+++|+.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++.+....+.++++||+||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999997554 4478899999887654321 23689999999999999888766688999999999999
Q ss_pred hhcCCCHHHHHHHHHhc---CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeee------eccChh
Q 010649 258 MLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV------DIVSES 328 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 328 (505)
+.+.++...+..++..+ .++.|+|+||||+++ ...++..+ ..+.. ..... ...+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~~-~~~~r----~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADYY-VSDWR----PVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEEE-ECCCC----SSCEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCcc-cCCCC----CccceEEEeeCCeeeccCcc
Confidence 99988888888887666 578999999999986 55565543 32221 11100 00111110 011111
Q ss_pred -------HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC------------------------------CCCe
Q 010649 329 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------GWPA 371 (505)
Q Consensus 329 -------~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~------------------------------~~~~ 371 (505)
.+...+.+.+ .+++++||||+++++++.++..|.+. ...+
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 1344444444 35679999999999999999988752 1357
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cC---CCCChhHHHHhhcccccCCC--cc
Q 010649 372 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD---FPGSLEDYVHRIGRTGRAGA--KG 442 (505)
Q Consensus 372 ~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~---~p~s~~~~~Qr~GR~~R~g~--~g 442 (505)
..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.|. .|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G 379 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 379 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 88999999999999999999999999999999999999999999998 66 68899999999999999984 69
Q ss_pred EEEEEecCccH
Q 010649 443 TAYTFFTAANA 453 (505)
Q Consensus 443 ~~~~~~~~~~~ 453 (505)
.|+++++..+.
T Consensus 380 ~~~~l~~~~~~ 390 (702)
T 2p6r_A 380 EAIIIVGKRDR 390 (702)
T ss_dssp EEEEECCGGGH
T ss_pred eEEEEecCccH
Confidence 99999988763
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-46 Score=410.64 Aligned_cols=333 Identities=21% Similarity=0.247 Sum_probs=215.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
..++..|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+.+.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999999999999999998887642 223667999999999999999999999
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC-ccCCccEEEEcCcchhhcCCCHHHH-HHHHHh
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ 273 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lVlDEah~~~~~~~~~~~-~~il~~ 273 (505)
+...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+......+ ..++..
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999987777777778899999999999999988766 7889999999999999876533222 233322
Q ss_pred c----CCCCceEEecCCCh-----------HHHHHHHHH------------------HccCCcEEEEcCCCccccc----
Q 010649 274 I----RPDRQTLYWSATWP-----------KEVEHLARQ------------------YLYNPYKVIIGSPDLKANH---- 316 (505)
Q Consensus 274 ~----~~~~~~v~~SAT~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~---- 316 (505)
. .+.+++++||||++ ..+..+... +...+..............
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1 56789999999984 222222221 2222221111111000000
Q ss_pred ----------c------------e----------eeee------------------------------------------
Q 010649 317 ----------A------------I----------RQHV------------------------------------------ 322 (505)
Q Consensus 317 ----------~------------~----------~~~~------------------------------------------ 322 (505)
. + .+.+
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0000
Q ss_pred -----------------------------------------------eccChhHHHHHHHHHHHhh---cCCCeEEEEeC
Q 010649 323 -----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMD 352 (505)
Q Consensus 323 -----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~vlVF~~ 352 (505)
.......|...|.++|.+. ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 0000244666677777653 34579999999
Q ss_pred CcccHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCCCEEEEc
Q 010649 353 TKKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINY 419 (505)
Q Consensus 353 ~~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~Vi~~ 419 (505)
++..++.+++.|++. |..+..+||+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999873 4556677899999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 420 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 420 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
|+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 720 d~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp SCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999 999 89999999988754
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-45 Score=378.28 Aligned_cols=323 Identities=22% Similarity=0.279 Sum_probs=255.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999988887762 256799999999999999999999975555
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCce
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (505)
..+..++|+...... ......++|+|+||++|.+.+......+.++++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 688888888765543 3334468999999999999988877788999999999999998765555666666666788999
Q ss_pred EEecCCChH---HHHHHHHHHccCCcEEEEcCCC-ccc---ccceee---------------------------------
Q 010649 281 LYWSATWPK---EVEHLARQYLYNPYKVIIGSPD-LKA---NHAIRQ--------------------------------- 320 (505)
Q Consensus 281 v~~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~--------------------------------- 320 (505)
++||||+.. .+..+...+............. ... ......
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999963 3444444332221111100000 000 000000
Q ss_pred ------------------------------------------------------------e-------------------
Q 010649 321 ------------------------------------------------------------H------------------- 321 (505)
Q Consensus 321 ------------------------------------------------------------~------------------- 321 (505)
.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence 0
Q ss_pred ----------------eeccChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcC------
Q 010649 322 ----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG------ 376 (505)
Q Consensus 322 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg------ 376 (505)
........|...+.+++... ..+.++||||+++..++.+++.|+..++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 00002345677777877775 35679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 377 --DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 377 --~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999998753
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.9e-46 Score=411.64 Aligned_cols=321 Identities=23% Similarity=0.282 Sum_probs=261.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.+| +|+|+|.++++.++++++++++||||||||++|+++++..+.. ++++|||+||++||.|+.+.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHhh
Confidence 466 7999999999999999999999999999999888887776632 6789999999999999999999987
Q ss_pred CCCCceEEEEECCCCc---hHHHHHHhcC-CcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh----------c-C
Q 010649 197 ASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML----------D-M 261 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~----------~-~ 261 (505)
..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++. + +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778899999999987 5666777766 99999999999888764 557789999999997654 4 7
Q ss_pred CCHHH-HHHHHHhcC-----------CCCceEEecCC-ChHHHH-HHHHHHccCCcEEEEcCCCcccccceeeeeeccCh
Q 010649 262 GFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (505)
Q Consensus 262 ~~~~~-~~~il~~~~-----------~~~~~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (505)
+|... +..++..++ ++.|+++|||| .|..+. .+...++. +.+.... .....+.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS-- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC--
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec--
Confidence 88888 888888776 88999999999 565544 23333333 1111111 2344455555554
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE----cc
Q 010649 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA----TD 402 (505)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~r~~~~~~f~~g~~~vLVa----T~ 402 (505)
.+...+.+++... +.++||||++++.|+.++..|+..++.+. .+||. |.+ ++.|++|+.+|||| |+
T Consensus 296 -~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCC
Confidence 4566667777763 37899999999999999999999999998 99992 555 99999999999999 99
Q ss_pred cccccCCCCC-CCEEEEcCCCC----------------------------------------------------------
Q 010649 403 VAARGLDVKD-VKYVINYDFPG---------------------------------------------------------- 423 (505)
Q Consensus 403 ~~~~Gidi~~-~~~Vi~~~~p~---------------------------------------------------------- 423 (505)
++++|||+|+ |++||+||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------ChhHHHHhhcccccCCCcc--EEEEEecCccHHHHHHHHHHHHH
Q 010649 424 --------------SLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 465 (505)
Q Consensus 424 --------------s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 465 (505)
++.+|+||+||+||.+..| .++.++..+|...++.|.+.++-
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7889999999999965432 34444444888888888888863
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-44 Score=397.49 Aligned_cols=316 Identities=18% Similarity=0.230 Sum_probs=253.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
+|+|+|.++++.+++++++++++|||+|||++|.++++..+.. +.++||++|+++|++|+++.+.+++.
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 6999999999999999999999999999999999988877654 67899999999999999999999765
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCce
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (505)
.+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||||++.+.++...+..++..+++..++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 567788876543 357999999999999988877788999999999999999999999999999999999999
Q ss_pred EEecCCChHHHH--HHHHHHccCCcEEEEcCCCcccccceeeeeec---------cCh----------------------
Q 010649 281 LYWSATWPKEVE--HLARQYLYNPYKVIIGSPDLKANHAIRQHVDI---------VSE---------------------- 327 (505)
Q Consensus 281 v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------------------- 327 (505)
|+||||+++..+ .........+..+....... ..+.+.+.. +..
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGD 303 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcc
Confidence 999999987432 33333334455554433221 111111110 000
Q ss_pred ------------------------hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCC-------------
Q 010649 328 ------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP------------- 370 (505)
Q Consensus 328 ------------------------~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~------------- 370 (505)
...+..++..+... ...++||||+++..|+.++..|...++.
T Consensus 304 ~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 304 DPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp -------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 11122233333332 3348999999999999999999775442
Q ss_pred --------------------------eEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cC
Q 010649 371 --------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD 420 (505)
Q Consensus 371 --------------------------~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~ 420 (505)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 788999999999999999999999999999999999999999999999 99
Q ss_pred C----CCChhHHHHhhcccccCCC--ccEEEEEecCc-cHHHHHHH
Q 010649 421 F----PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA-NARFAKEL 459 (505)
Q Consensus 421 ~----p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~-~~~~~~~l 459 (505)
. |.++.+|+||+||+||.|. .|.|++++++. +...+..+
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 8 8899999999999999997 49999999876 44444433
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-45 Score=406.72 Aligned_cols=333 Identities=21% Similarity=0.249 Sum_probs=215.2
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
-.++.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+++.++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999988776542 122567999999999999999999999
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCC-ccCCccEEEEcCcchhhcCCCH-HHHHHHHHh
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFE-PQIKKILSQ 273 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lVlDEah~~~~~~~~-~~~~~il~~ 273 (505)
+...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++...+.. ..+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999877666666667789999999999999987766 7889999999999999876532 222233332
Q ss_pred ----cCCCCceEEecCCCh-----------HHHHHHHHH------------------HccCCcEEEEcCCCccccc----
Q 010649 274 ----IRPDRQTLYWSATWP-----------KEVEHLARQ------------------YLYNPYKVIIGSPDLKANH---- 316 (505)
Q Consensus 274 ----~~~~~~~v~~SAT~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~---- 316 (505)
..+.+++++||||+. ..+..+... +...|..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 156689999999984 222222211 2222222221111000000
Q ss_pred -------------c---------e----------eeee------------------------------------------
Q 010649 317 -------------A---------I----------RQHV------------------------------------------ 322 (505)
Q Consensus 317 -------------~---------~----------~~~~------------------------------------------ 322 (505)
. + .+.+
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 0000
Q ss_pred -----------------------------------------------eccChhHHHHHHHHHHHhh---cCCCeEEEEeC
Q 010649 323 -----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMD 352 (505)
Q Consensus 323 -----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~vlVF~~ 352 (505)
.......|...|.++|.+. ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0000244666677777764 34579999999
Q ss_pred CcccHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEcccccccCCCCCCCEEEEc
Q 010649 353 TKKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINY 419 (505)
Q Consensus 353 ~~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gidi~~~~~Vi~~ 419 (505)
++..++.|+..|.+. |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|+|++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999976 4555667899999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 420 DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 420 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
|+|+|+..|+||+|| ||. ..|.++++++..+.
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999 999 78999999987654
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.9e-45 Score=409.76 Aligned_cols=320 Identities=20% Similarity=0.287 Sum_probs=258.2
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
..||. | |+|.++|+.++++++++++||||||||+ |.+|++..+... ++++|||+||++||.|+.+.+.++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHHH
Confidence 47888 9 9999999999999999999999999998 888888887652 678999999999999999999999
Q ss_pred cCCCCc----eEEEEECCCCchHH---HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHH
Q 010649 196 GASSKI----KSTCIYGGVPKGPQ---VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (505)
Q Consensus 196 ~~~~~i----~~~~~~gg~~~~~~---~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~ 268 (505)
+...++ ++..++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||++++ +...++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999888664 344455 99999999999987665 66899999999999998 567888
Q ss_pred HHHHhc-----------CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH
Q 010649 269 KILSQI-----------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (505)
Q Consensus 269 ~il~~~-----------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (505)
.++..+ +...|++++|||++.. ..++..++.++..+.+.... .....+.+.+. ...+...+.++
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHH
Confidence 887766 3568899999999876 54444444333333222222 22233444443 34555666677
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----cccccccCCCCCC
Q 010649 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARGLDVKDV 413 (505)
Q Consensus 338 l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVa----T~~~~~Gidi~~~ 413 (505)
+... +.++||||++++.|+.++..|+.. +.+..+||++. .+++.|++|+.+|||| |+++++|||+|+|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 7654 468999999999999999999988 99999999983 7889999999999999 9999999999996
Q ss_pred -CEEEEcCCC----------------------------------------------------------------------
Q 010649 414 -KYVINYDFP---------------------------------------------------------------------- 422 (505)
Q Consensus 414 -~~Vi~~~~p---------------------------------------------------------------------- 422 (505)
++||++|+|
T Consensus 343 I~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 422 (1054)
T 1gku_B 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 422 (1054)
T ss_dssp CCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEE
T ss_pred ccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeeccee
Confidence 999999999
Q ss_pred -CChhHHHHhhcccccCCCcc--EEEEEecCccHHHHHHHHHHHHH
Q 010649 423 -GSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 465 (505)
Q Consensus 423 -~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 465 (505)
.+..+|+||+||+||.|..| .+++|+..++...+..|.+.++.
T Consensus 423 ~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 423 FPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 48888888888888888888774
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=398.37 Aligned_cols=325 Identities=23% Similarity=0.300 Sum_probs=228.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH-HHHHHHhcCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGAS 198 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~-~~~~~~~~~~ 198 (505)
.+|+|+|.++++.+++++++++++|||+|||++|++|++..+..... .+.+.++|||+|+++|+.|| .+++.+++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 48999999999999999999999999999999999999888765311 11236799999999999999 9999998865
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHH------HccCCccCCccEEEEcCcchhhcCC-CHHHHHHHH
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKIL 271 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l------~~~~~~l~~~~~lVlDEah~~~~~~-~~~~~~~il 271 (505)
.+++..++|+.........+...++|+|+||++|.+.+ ......+.++++|||||||++.... +...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48899999998877777777788999999999999888 3445678899999999999986543 222222222
Q ss_pred Hh----cC---------CCCceEEecCCChH-----------HHHHHHHHHcc------------------CCcEEEE-c
Q 010649 272 SQ----IR---------PDRQTLYWSATWPK-----------EVEHLARQYLY------------------NPYKVII-G 308 (505)
Q Consensus 272 ~~----~~---------~~~~~v~~SAT~~~-----------~~~~~~~~~~~------------------~~~~~~~-~ 308 (505)
.. .. +.+++++||||+.. .+..+...+.. .|..... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 11 67899999999975 12222222211 1111110 0
Q ss_pred CCCcc---------------------ccccee-----eee----------------------------------------
Q 010649 309 SPDLK---------------------ANHAIR-----QHV---------------------------------------- 322 (505)
Q Consensus 309 ~~~~~---------------------~~~~~~-----~~~---------------------------------------- 322 (505)
..... ...... +.+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 000
Q ss_pred ---------------------------ecc-------------------------ChhHHHHHHHHHHHhhc---C-CCe
Q 010649 323 ---------------------------DIV-------------------------SESQKYNKLVKLLEDIM---D-GSR 346 (505)
Q Consensus 323 ---------------------------~~~-------------------------~~~~k~~~l~~~l~~~~---~-~~~ 346 (505)
... ....|...|.++|.... + ..+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 01122233344444321 2 679
Q ss_pred EEEEeCCcccHHHHHHHHHhC------CCCeEEEcCC--------CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCC
Q 010649 347 ILIFMDTKKGCDQITRQLRMD------GWPALSIHGD--------KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~ 412 (505)
+||||++++.++.+++.|+.. ++++..+||+ |++.+|..++++|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecC
Q 010649 413 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 413 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
+++||+||+|+|+..|+||+||++|.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999976654 44444443
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.4e-44 Score=376.87 Aligned_cols=361 Identities=19% Similarity=0.254 Sum_probs=250.7
Q ss_pred ccccCCCHHHHHHHHHhcCceee-cCCCCCCCCCCcCCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHhcCCcEEE
Q 010649 68 PSVAAMSEREVEEYRQQREITVE-GRDVPKPVKSFRDVGFPDYVMQEISK-----AGFFEPTPIQAQGWPMALKGRDLIG 141 (505)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~f~~~~l~~~~~~~l~~-----~~~~~~~~~Q~~~i~~~l~~~~~li 141 (505)
+....+|++++.....+....+. +. +++++ +| +....+.. .|. .|+|+|..+++.+++|+ |+
T Consensus 25 ~~~~~lsd~eL~~kt~~fk~rl~~g~-------~ld~~-lp-eafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 25 PEMEKLSDEELKGKTAEFRARLEKGE-------VLENL-IP-EAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTC-------CHHHH-HH-HHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHcCC-------Chhhh-hH-HHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 45777888887665544222221 11 12221 22 22222222 354 89999999999999988 99
Q ss_pred EccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhc
Q 010649 142 IAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQK 221 (505)
Q Consensus 142 ~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~ 221 (505)
.++||+|||++|++|++.+... ++.++||+||++||.|.++++..++...++++.+++||.+. +.+.+..
T Consensus 93 em~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~--~~r~~~~ 162 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPA--PAKREAY 162 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCH--HHHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCH--HHHHHhc
Confidence 9999999999999999876543 56799999999999999999999998889999999999875 3444555
Q ss_pred CCcEEEeChHHH-HHHHHcc------CCccCCccEEEEcCcchhh-cCC---------------CHHHHHHHHHhcCC--
Q 010649 222 GVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG---------------FEPQIKKILSQIRP-- 276 (505)
Q Consensus 222 ~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~~---------------~~~~~~~il~~~~~-- 276 (505)
+++|+|+||++| .+++... ...++++.++|+||||+|+ +++ |...+..++..+++
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~ 242 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQE 242 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhh
Confidence 799999999999 7887654 2567899999999999998 543 56778888887764
Q ss_pred ------------------CCceE------------------------EecCCChHHHHHH---H--HHHcc--------C
Q 010649 277 ------------------DRQTL------------------------YWSATWPKEVEHL---A--RQYLY--------N 301 (505)
Q Consensus 277 ------------------~~~~v------------------------~~SAT~~~~~~~~---~--~~~~~--------~ 301 (505)
.+|++ ++|||.+.....+ + ..++. +
T Consensus 243 ~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d 322 (853)
T 2fsf_A 243 KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKD 322 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeec
Confidence 45553 8899975422211 1 11110 0
Q ss_pred C-----------------------------cEEEEcCCCccccccee---------------------------------
Q 010649 302 P-----------------------------YKVIIGSPDLKANHAIR--------------------------------- 319 (505)
Q Consensus 302 ~-----------------------------~~~~~~~~~~~~~~~~~--------------------------------- 319 (505)
+ ..+.+.... .....+.
T Consensus 323 ~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~-~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~v 401 (853)
T 2fsf_A 323 GEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNEN-QTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDT 401 (853)
T ss_dssp ----------------------------------CCCCC-EEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEE
T ss_pred CcEEEEecccCcccCCCccchhhhHHHHhcccceecccc-cccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcE
Confidence 0 011111110 0001111
Q ss_pred --------------eeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHH
Q 010649 320 --------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD 384 (505)
Q Consensus 320 --------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~ 384 (505)
+.+.......|...+.+.+... ..+.++||||+|++.++.|+..|++.|+++.++||++.+.++.
T Consensus 402 v~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ 481 (853)
T 2fsf_A 402 VVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAA 481 (853)
T ss_dssp EECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHH
T ss_pred EEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHH
Confidence 1123456788999999988765 3556899999999999999999999999999999999988998
Q ss_pred HHHHHHhcCCCcEEEEcccccccCCCCCC-------------------------------------CEEEEcCCCCChhH
Q 010649 385 WVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------------------KYVINYDFPGSLED 427 (505)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gidi~~~-------------------------------------~~Vi~~~~p~s~~~ 427 (505)
.+.++|+.| .|+|||++++||+||+.. .+||+++.|.|...
T Consensus 482 iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~ri 559 (853)
T 2fsf_A 482 IVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRI 559 (853)
T ss_dssp HHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHH
T ss_pred HHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHH
Confidence 888999988 699999999999999974 59999999999999
Q ss_pred HHHhhcccccCCCccEEEEEecCccH
Q 010649 428 YVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 428 ~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
|.||+||+||.|.+|.++.|++..|.
T Consensus 560 y~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 560 DNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHhhccccccCCCCeeEEEEecccHH
Confidence 99999999999999999999998763
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-44 Score=415.37 Aligned_cols=345 Identities=19% Similarity=0.261 Sum_probs=259.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCC---CCCCCCEEEEEccc
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL---APGDGPIVLVLAPT 181 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~---~~~~~~~vlil~Pt 181 (505)
||+.....+ .||.+|+++|.++++.++. ++|++++||||||||++|.++++..+...... ....+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 555544333 3788999999999999875 78999999999999999999999998764321 12347789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC--CccCCccEEEEcCcchhh
Q 010649 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRML 259 (505)
Q Consensus 182 ~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lVlDEah~~~ 259 (505)
++||+|+.+.+.+.+...+++|..++|+....... ...++|+|||||++..++.+.. ..++++++||+||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999988888899999999987654322 3468999999999965554432 247889999999999887
Q ss_pred cCCCHHHHHHHHH-------hcCCCCceEEecCCChHHHHHHHHHHccCCc--EEEEcCCCcccccceeeeeeccCh---
Q 010649 260 DMGFEPQIKKILS-------QIRPDRQTLYWSATWPKEVEHLARQYLYNPY--KVIIGSPDLKANHAIRQHVDIVSE--- 327 (505)
Q Consensus 260 ~~~~~~~~~~il~-------~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--- 327 (505)
+ ..+..++.++. ..++..|+|++|||+|+ .+++++++..++. ...+.. ...+..+.+.+.....
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~--~~RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDN--SFRPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCG--GGCSSCEEEECCEECCCCH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECC--CCccCccEEEEeccCCcch
Confidence 6 46777776654 34678999999999986 6667665543321 111111 1222334443332222
Q ss_pred hHHHH----HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC------------------------------------
Q 010649 328 SQKYN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------------ 367 (505)
Q Consensus 328 ~~k~~----~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~------------------------------------ 367 (505)
..... .+.+.+.+....+++||||++++.|+.+++.|.+.
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (1724)
T 4f92_B 297 IKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDL 376 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHH
Confidence 11222 23333444445679999999999999988887531
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cCC------CCChhHHHHhhcccc
Q 010649 368 -GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF------PGSLEDYVHRIGRTG 436 (505)
Q Consensus 368 -~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~~------p~s~~~~~Qr~GR~~ 436 (505)
...+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||. |++ |-++.+|.||+||||
T Consensus 377 l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 377 LPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred hhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 134778999999999999999999999999999999999999999999985 443 458999999999999
Q ss_pred cCCC--ccEEEEEecCccHHHHHHH
Q 010649 437 RAGA--KGTAYTFFTAANARFAKEL 459 (505)
Q Consensus 437 R~g~--~g~~~~~~~~~~~~~~~~l 459 (505)
|.|. .|.++++..+++......+
T Consensus 457 R~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp CTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCCCccEEEEEecchhHHHHHHH
Confidence 9875 5999999988876555444
No 36
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.9e-43 Score=366.15 Aligned_cols=325 Identities=19% Similarity=0.251 Sum_probs=260.6
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
..|+ .|+|+|..+++.+++|+ |+.++||+|||++|.+|++.+.+. ++.++||+||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3577 99999999999999988 999999999999999999866554 456999999999999999999999
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHcc------CCccCCccEEEEcCcchhh-cC------
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM------ 261 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lVlDEah~~~-~~------ 261 (505)
....++++.+++||.+.. .+....+++|+|+||++| .++|... ...++.+.++||||||+|+ |+
T Consensus 176 ~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 988999999999998743 334445699999999999 7777653 3567889999999999998 43
Q ss_pred ---------CCHHHHHHHHHhcC---------CCCceE-----------------EecCCChH---HHHHHHH--HHcc-
Q 010649 262 ---------GFEPQIKKILSQIR---------PDRQTL-----------------YWSATWPK---EVEHLAR--QYLY- 300 (505)
Q Consensus 262 ---------~~~~~~~~il~~~~---------~~~~~v-----------------~~SAT~~~---~~~~~~~--~~~~- 300 (505)
+|...+..++..++ +.+|++ ++|||.+. .+...++ .++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47789999999997 678888 99999764 3333222 2221
Q ss_pred C-------CcEEEEcCCC----------------------c------cccccee--------------------------
Q 010649 301 N-------PYKVIIGSPD----------------------L------KANHAIR-------------------------- 319 (505)
Q Consensus 301 ~-------~~~~~~~~~~----------------------~------~~~~~~~-------------------------- 319 (505)
+ ...+++.... . .....+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 1111111100 0 0000011
Q ss_pred ---------------------eeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCC
Q 010649 320 ---------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 377 (505)
Q Consensus 320 ---------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~ 377 (505)
..+.......|...+.+.+.+. ..+.++||||+|++.++.|+..|++.|+++.++|++
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 1123345678898888888764 355689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCC--------------------------------------------
Q 010649 378 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------------------------- 413 (505)
Q Consensus 378 ~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~-------------------------------------------- 413 (505)
+.+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888888888877 699999999999999975
Q ss_pred --------CEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHH
Q 010649 414 --------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (505)
Q Consensus 414 --------~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 455 (505)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.-+
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 499999999999999999999999999999999999887533
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-42 Score=382.27 Aligned_cols=306 Identities=18% Similarity=0.203 Sum_probs=244.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
+|+|+|.++++.+++++++++++|||+|||++|++++...+.. ++++||++|+++|+.|+++.+.+++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 6899999999999999999999999999999999988776543 67899999999999999999998754 4
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCce
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (505)
+.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++...++.++..++++.++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7788888887543 347999999999999998877778999999999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHcc---CCcEEEEcCCCcccccceeee------------------------------------
Q 010649 281 LYWSATWPKEVEHLARQYLY---NPYKVIIGSPDLKANHAIRQH------------------------------------ 321 (505)
Q Consensus 281 v~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------------------------------------ 321 (505)
|++|||+++.. +++..+.. .+..+...... ...+.+.
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 99999997643 44444321 22222211111 0000000
Q ss_pred ---------------------------------------------------------eeccChhHHHHHHHHHHHhhcCC
Q 010649 322 ---------------------------------------------------------VDIVSESQKYNKLVKLLEDIMDG 344 (505)
Q Consensus 322 ---------------------------------------------------------~~~~~~~~k~~~l~~~l~~~~~~ 344 (505)
........+...+++.+... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 00011223455566666553 34
Q ss_pred CeEEEEeCCcccHHHHHHHHHhCCC---------------------------------------CeEEEcCCCCHHHHHH
Q 010649 345 SRILIFMDTKKGCDQITRQLRMDGW---------------------------------------PALSIHGDKSQAERDW 385 (505)
Q Consensus 345 ~~vlVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~lhg~~~~~~r~~ 385 (505)
.++||||++++.|+.++..|...++ .+..+|++|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 5899999999999999999977655 4789999999999999
Q ss_pred HHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCC---------ChhHHHHhhcccccCC--CccEEEEEec
Q 010649 386 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------SLEDYVHRIGRTGRAG--AKGTAYTFFT 449 (505)
Q Consensus 386 ~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~---------s~~~~~Qr~GR~~R~g--~~g~~~~~~~ 449 (505)
+++.|++|.++|||||+++++|||+|+ ..||+++.+. |+.+|+||+|||||.| ..|.+++++.
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999999 5555555544 9999999999999998 4577777773
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-43 Score=377.53 Aligned_cols=333 Identities=20% Similarity=0.253 Sum_probs=247.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
+.+.+.+...+| +||++|.++++.++++ .++++++|||||||++|++|++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344445567788 9999999999998865 589999999999999999999988765 6779999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 182 ~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
++||.|+++.+.+++...++++..++|+...... ...+.. .++|+|+||+.|.+ ...+.++++||+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999988888999999999876543 333444 48999999988744 45678999999999999
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHH
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (505)
+.... +..+......+++++||||+.+....+. +..+.....+.... .....+...+ .. ..+...+.+.
T Consensus 502 ~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~~~~--~~-~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQTML--VP-MDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCEECC--CC-SSTHHHHHHH
T ss_pred hhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceEEEE--ec-cchHHHHHHH
Confidence 64221 2222333457899999999866544332 23332222222111 1111222211 11 2233444455
Q ss_pred HHh-hcCCCeEEEEeCCcc--------cHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010649 338 LED-IMDGSRILIFMDTKK--------GCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (505)
Q Consensus 338 l~~-~~~~~~vlVF~~~~~--------~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (505)
+.+ ...+.+++|||++.+ .++.+++.|.+ .++.+..+||+|++.+|+.++++|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 544 345678999999764 47888888988 578899999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCC-ChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 406 RGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 406 ~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
+|+|+|++++||+++.|. +.+.|.||+||+||.|+.|.|++++++.+.. ....++.+++.
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~~~rl~~l~~~ 711 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-AMERLRFFTLN 711 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-HHHHHHHHHTC
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-HHHHHHHHHhh
Confidence 999999999999999996 7899999999999999999999999854433 33344445544
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.2e-42 Score=384.21 Aligned_cols=324 Identities=20% Similarity=0.209 Sum_probs=255.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----CC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----~~--~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
++.++...+.+...--++|||+|.++++.+++ ++ ++++++|||+|||++|+++++..+.. +++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 34666777777654334689999999999886 65 89999999999999999888776554 678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEEEc
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlD 253 (505)
++||++||.|+++.+.+++...++++..+.+....... ...+.. .++|+|+||+.|. ....+.++++||||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEe
Confidence 99999999999999998887778888888876654433 333444 4899999997662 34567899999999
Q ss_pred CcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHH
Q 010649 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (505)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (505)
|||++ ......++..++.+.++++||||+++....+....+.++.. +.... .....+...+..... ...
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~--i~~~~-~~r~~i~~~~~~~~~---~~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI--IATPP-ARRLAVKTFVREYDS---MVV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE--CCCCC-CBCBCEEEEEEECCH---HHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE--EecCC-CCccccEEEEecCCH---HHH
Confidence 99994 34456667777788999999999877666555444433221 11111 112223333332222 233
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
...++.....+++++|||++++.++.+++.|++. ++.+..+||+|++.+|+.++++|++|+++|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3444555666789999999999999999999886 78999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-CCChhHHHHhhcccccCCCccEEEEEecCc
Q 010649 412 DVKYVINYDF-PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (505)
Q Consensus 412 ~~~~Vi~~~~-p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 451 (505)
++++||+++. ++++.+|.||+||+||.|+.|.|++++.+.
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999988 578999999999999999999999998765
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3e-42 Score=396.39 Aligned_cols=343 Identities=16% Similarity=0.205 Sum_probs=263.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
+.+...+.+...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+...+ +.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHH
Confidence 456677788888899999999999999986 567999999999999999999999988642 5679999999999
Q ss_pred HHHHHHHHHH-hcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc--CCccCCccEEEEcCcchhhcC
Q 010649 185 AVQIQQESTK-FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDM 261 (505)
Q Consensus 185 a~Q~~~~~~~-~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~~ 261 (505)
|.|+++.+.+ |+...++++..++|+..... . ....++|+|||||+|..++.+. ...++++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--K-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--H-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch--h-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999999875 66667899999888764322 2 2345799999999997776542 334788999999999998875
Q ss_pred CCHHHHHHHHHh-------cCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeecc---ChhHH-
Q 010649 262 GFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---SESQK- 330 (505)
Q Consensus 262 ~~~~~~~~il~~-------~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~k- 330 (505)
.+..++.++.. .++..|+|+||||+++ ..++++++...+..+..-... ..+..+...+... ....+
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhh
Confidence 57766666544 4578999999999986 667777665444322221211 2222233333222 11111
Q ss_pred ---HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC----------------------------------CCCeEE
Q 010649 331 ---YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----------------------------------GWPALS 373 (505)
Q Consensus 331 ---~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~ 373 (505)
...+...+....+.+++||||++++.|+.++..|... ...+..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 2234455666677789999999999998888766321 134789
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE----cC------CCCChhHHHHhhcccccCCC--c
Q 010649 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD------FPGSLEDYVHRIGRTGRAGA--K 441 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~----~~------~p~s~~~~~Qr~GR~~R~g~--~ 441 (505)
+|++|++.+|..+++.|++|.++|||||+++++|||+|+..+||. || .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999883 22 35679999999999999987 5
Q ss_pred cEEEEEecCccHHHHHHHH
Q 010649 442 GTAYTFFTAANARFAKELI 460 (505)
Q Consensus 442 g~~~~~~~~~~~~~~~~l~ 460 (505)
|.|++++.+.+..+++.++
T Consensus 1299 G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHHT
T ss_pred eEEEEEecchHHHHHHHHh
Confidence 9999999988877665543
No 41
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.1e-41 Score=320.18 Aligned_cols=239 Identities=65% Similarity=1.097 Sum_probs=221.3
Q ss_pred CCHHHHHHHHHhcCceeecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010649 73 MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~ 152 (505)
+++++++.+++...+.+.+.+.|+|+.+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHH
Q 010649 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (505)
Q Consensus 153 ~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~ 232 (505)
|++|++.++...+......++++|||+||++|+.|+.+.+.++....++++..++|+.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987655555568889999999999999999999998888899999999999888888888899999999999
Q ss_pred HHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCC
Q 010649 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 311 (505)
Q Consensus 233 l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (505)
|.+++......+.++++||+||||++.+++|...+..++..++++.|+++||||+|+.+..+++.++.+|..+.++..+
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 9999988888899999999999999999999999999999999999999999999999999999999999998877643
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.7e-43 Score=364.35 Aligned_cols=312 Identities=18% Similarity=0.171 Sum_probs=240.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
.+|+|+|.++++.+++++++++++|||+|||++|+.++...+... ..++|||+|+++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999999888776542 3489999999999999999999997777
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~ 279 (505)
.+.+..++++.....+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 7788888888776554 456689999999976432 334577899999999999874 567888888888899
Q ss_pred eEEecCCChHHHHHHHH-HHccCCcEEEEcCCCc-----ccccceeeee---------------------eccChhHHHH
Q 010649 280 TLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDL-----KANHAIRQHV---------------------DIVSESQKYN 332 (505)
Q Consensus 280 ~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~---------------------~~~~~~~k~~ 332 (505)
+++||||++........ ..+..+........+. .....+.... .......+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999765433221 1122222211111100 0000000000 1111223444
Q ss_pred HHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCC
Q 010649 333 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLD 409 (505)
Q Consensus 333 ~l~~~l~~~~~--~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gid 409 (505)
.+.+++..... ..++||||+ .++++.+++.|.+.+.++..+||+++..+|+.+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 55666655432 335666666 899999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEec
Q 010649 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 410 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
+|++++||++++|+++.+|+|++||+||.|+.+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999998875555554
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.9e-43 Score=369.79 Aligned_cols=323 Identities=19% Similarity=0.153 Sum_probs=240.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010649 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (505)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (505)
+++++.+++.+... ...++|+|+.+++.++++++++++||||||||++|++|++..+... ++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 34555544444332 4678999888899999999999999999999999999999988762 678999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC
Q 010649 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (505)
Q Consensus 184 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~ 263 (505)
||.|+.+.+..+ .+. +.+.... .....+..+.++|.+.+.+.+... ..+.++++|||||||++ +.+|
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 999999888632 222 1111100 001223467788888887766554 45789999999999998 6667
Q ss_pred HHHHHHHHHhcC-CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhc
Q 010649 264 EPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 342 (505)
Q Consensus 264 ~~~~~~il~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 342 (505)
...+..++..++ ++.|+++||||++..+..++. .++..+.+.... +. .+...+...+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh--
Confidence 778888877765 789999999999876543322 122222222110 00 001122233333
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEE------
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV------ 416 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V------ 416 (505)
..+++||||++++.|+.+++.|++.++.+..+|++ +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 35689999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhHHHHhhcccccCCC-ccEEEEEec---CccHHHHHHHHHHHHHhCCCCCH
Q 010649 417 --------------INYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---AANARFAKELITILEEAGQKVSP 472 (505)
Q Consensus 417 --------------i~~~~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~i~~ 472 (505)
|+++.|.+.++|+||+||+||.|. .|.|++|++ +.+...+..+...+......+++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 777889999999999999999965 899999998 77777777777777665555544
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.5e-42 Score=350.74 Aligned_cols=311 Identities=18% Similarity=0.139 Sum_probs=225.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 118 GFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~-li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++.++... ++++||++||++||.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcCc-
Confidence 5678999985 79999998886 8899999999999999999887652 578999999999999999988532
Q ss_pred CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHH-hcC
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS-QIR 275 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~-~~~ 275 (505)
.+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+...+..+.. ...
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 22211111100 11234579999999998877654 55789999999999977 3333333333322 235
Q ss_pred CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcc
Q 010649 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 355 (505)
Q Consensus 276 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~ 355 (505)
++.|+++||||++..+..+ +..++..+...... .. ..+ ..+...+.+ ..+++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~---~~~---------~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PE---RSW---------NTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CS---SCC---------SSSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC---Cc---hhh---------HHHHHHHHh--CCCCEEEEcCCHH
Confidence 6899999999998744322 22233333222110 00 000 011223333 2468999999999
Q ss_pred cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcC---------------
Q 010649 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD--------------- 420 (505)
Q Consensus 356 ~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~--------------- 420 (505)
.|+.++..|++.++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999754 57899999999999999999999999999 9999998
Q ss_pred -----CCCChhHHHHhhcccccCCC-ccEEEEEecCcc---HHHHHHHHHHHHHhCCCCCHHH
Q 010649 421 -----FPGSLEDYVHRIGRTGRAGA-KGTAYTFFTAAN---ARFAKELITILEEAGQKVSPEL 474 (505)
Q Consensus 421 -----~p~s~~~~~Qr~GR~~R~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~i~~~l 474 (505)
.|.+.++|+||+||+||.|. .|.+++|+...+ ..+...+...+...+.++|.++
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 788888875432 1222222334445566666544
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-41 Score=351.39 Aligned_cols=294 Identities=20% Similarity=0.224 Sum_probs=223.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
.+|+|+|.++++.+++++++++++|||+|||++|+.++... +.++|||+|+++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999999877654 446999999999999999999995
Q ss_pred Cce-EEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCC
Q 010649 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 200 ~i~-~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~ 278 (505)
++. +..++|+... ..+|+|+||+.+...+... ..++++|||||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 467 7777776543 4799999999987765421 2458999999999999887654 44444 568
Q ss_pred ceEEecCCChH-------------------HHHHHHHHHccCCcEE--EEcCCCc-----------------------cc
Q 010649 279 QTLYWSATWPK-------------------EVEHLARQYLYNPYKV--IIGSPDL-----------------------KA 314 (505)
Q Consensus 279 ~~v~~SAT~~~-------------------~~~~~~~~~~~~~~~~--~~~~~~~-----------------------~~ 314 (505)
+++++|||+.. ...++...++..+... .+..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999862 1222222222222111 1110000 00
Q ss_pred ccceeeee---------------------eccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEE
Q 010649 315 NHAIRQHV---------------------DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (505)
Q Consensus 315 ~~~~~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~ 373 (505)
...+.+.+ ..+....|...+.+++.. ..+.++||||++++.++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 00000000 012345677788888877 456799999999999999999884 567
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc-cEE--EEEecC
Q 010649 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTA--YTFFTA 450 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~-g~~--~~~~~~ 450 (505)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||++|.|+. +.+ +.+++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999854 344 445554
Q ss_pred c
Q 010649 451 A 451 (505)
Q Consensus 451 ~ 451 (505)
+
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.1e-42 Score=352.18 Aligned_cols=287 Identities=18% Similarity=0.189 Sum_probs=200.8
Q ss_pred HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCC
Q 010649 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~ 211 (505)
++++++++++++|||||||++|++|++..+... ++++||++||++||.|+++.+..+. +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC------eEEecccc-
Confidence 467889999999999999999999999887653 5789999999999999999887542 22111110
Q ss_pred chHHHHHHhcCCcEEEeChHHHH---------HHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceE
Q 010649 212 KGPQVRDLQKGVEIVIATPGRLI---------DMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTL 281 (505)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~T~~~l~---------~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v 281 (505)
-.++||+++. ..+. ....+.++++||+||||++ +..+...+..+.... ++++|++
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred -------------eeccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 0255554432 2222 2345789999999999998 332322222222222 3679999
Q ss_pred EecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 010649 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (505)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~ 361 (505)
+||||+++.+..++.. ..+.... .+ .+....+ ..+...+.+ ..+++||||++++.|+.++
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~------------~~---~~~~~~~-~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDV------------QT---DIPSEPW-NTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEE------------EC---CCCSSCC-SSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEeCCCCchhhhhhhc--CCCeeEe------------ee---ccChHHH-HHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 9999997754332211 0111110 00 0111111 111222222 2569999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE-------------------cCCC
Q 010649 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------------------YDFP 422 (505)
Q Consensus 362 ~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~-------------------~~~p 422 (505)
+.|++.++++..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4688999999999999999999999999999 999986 8889
Q ss_pred CChhHHHHhhcccccC-CCccEEEEEe---cCccHHHHHHHHHHHHHhCCCCCH
Q 010649 423 GSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAGQKVSP 472 (505)
Q Consensus 423 ~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~i~~ 472 (505)
.+.++|+||+||+||. ++.|.|++|+ ++.+...+..+...+.....+++.
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 9999999999999998 6899999996 677777777777777666666654
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.8e-40 Score=353.50 Aligned_cols=337 Identities=18% Similarity=0.254 Sum_probs=247.5
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010649 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (505)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (505)
+.++.+|+++++++.+.+.+...+ ..|++.|+++|+.++. +++++++||||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 345678999999999999999887 7899999999988775 5679999999999998 45555222111 111256
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcC-CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEE
Q 010649 174 IVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (505)
Q Consensus 174 ~vlil~Pt~~La~Q~~~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVl 252 (505)
+++|++|+++|+.|+.+.+.+... .....+......... .....+|+++||+++.+.+... ..+.++++|||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIl 214 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIIL 214 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEe
Confidence 799999999999999887765432 222222211111100 1235789999999999877664 45889999999
Q ss_pred cCcch-hhcCCCH-HHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHH
Q 010649 253 DEADR-MLDMGFE-PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 330 (505)
Q Consensus 253 DEah~-~~~~~~~-~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (505)
||+|. .++..+. ..+..++ ...++.++++||||++. ..+.+ ++.+...+.+... ...+.+.+......++
T Consensus 215 DEah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr----~~pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGR----TYPVELYYTPEFQRDY 286 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCC----CCCEEEECCSSCCSCH
T ss_pred cCccccccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCc----ccceEEEEecCCchhH
Confidence 99995 6653322 2333333 44578999999999964 34444 4444433333222 1234444444444444
Q ss_pred HHHHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHHh-----------CCCCeEEEcCCCCHHHHHHHHHHHh-----
Q 010649 331 YNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRM-----------DGWPALSIHGDKSQAERDWVLSEFK----- 391 (505)
Q Consensus 331 ~~~l~~~l~~---~~~~~~vlVF~~~~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~r~~~~~~f~----- 391 (505)
...++..+.. ....+++||||+++++++.++..|++ .++.+..+||++++++|..+++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 3333333222 22467999999999999999999975 5788999999999999999999999
Q ss_pred cCCCcEEEEcccccccCCCCCCCEEEEcCC------------------CCChhHHHHhhcccccCCCccEEEEEecCccH
Q 010649 392 AGKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (505)
Q Consensus 392 ~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 453 (505)
+|..+|||||+++++|||||++++||++++ |.|.++|+||+||+||. ..|.|+.|+++.+.
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999999999887 88999999999999999 89999999987643
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.3e-41 Score=355.64 Aligned_cols=307 Identities=18% Similarity=0.211 Sum_probs=217.9
Q ss_pred HHHcCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010649 114 ISKAGFF-----EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (505)
Q Consensus 114 l~~~~~~-----~~~~~Q~-----~~i~~~l------~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vli 177 (505)
+..+||. .|+|+|+ ++|+.++ +++++++++|||||||++|++|++..+... ++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEE
Confidence 3445555 8999999 9999888 899999999999999999999999887652 578999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 178 l~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
++||++||.|+++.+..+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+.++++||+||||+
T Consensus 276 laPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 9999999999999888653 21 1000000 000111234455556665555543 5688999999999999
Q ss_pred hhcCCCHHHHHHHHHhc-CCCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHH
Q 010649 258 MLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (505)
+ +..+...+..+...+ ++.+|+++||||++..+..+... ..++..... ...... ...++.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~---------------~~~~~~-~~~~l~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS---------------EIPDRA-WSSGFE 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSC-CSSCCH
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee---------------ecCHHH-HHHHHH
Confidence 8 221223333333333 36799999999998654322110 011111100 001111 111222
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEE
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~V 416 (505)
.+.+ ..+++||||++++.++.++..|++.++.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 405 ~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 405 WITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 3333 45799999999999999999999999999999994 789999999999999999999999999999 9999
Q ss_pred EE--------------------cCCCCChhHHHHhhcccccC-CCccEEEEEe---cCccHHHHHHHHHHHHH
Q 010649 417 IN--------------------YDFPGSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEE 465 (505)
Q Consensus 417 i~--------------------~~~p~s~~~~~Qr~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~ 465 (505)
|+ ++.|.+.++|+||+||+||. ++.|.|++|+ ++.+..++..+...+.-
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 98 67899999999999999999 7899999996 56666666665555433
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-40 Score=345.40 Aligned_cols=279 Identities=22% Similarity=0.244 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
..++++|.++++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+++.+.+...
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~g-- 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHG-- 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHHS--
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHhC--
Confidence 35566777777777788899999999999999999887752 45799999999999999998876542
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~ 279 (505)
..+...+|+.. ...+++|+|+||++| +......+.++++||||||| +.+.+|...+..+++.++...+
T Consensus 283 -~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 283 -IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp -CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred -CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 34555666643 245689999999998 45566778899999999996 5566778888999998887776
Q ss_pred --eEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccH
Q 010649 280 --TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGC 357 (505)
Q Consensus 280 --~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~ 357 (505)
+++||||++..+. ...+....+.... ...+. ....... + .....+++||||++++.+
T Consensus 351 ~llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~i~----~~~~~~~-------l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPNIEEVALSN---TGEIP----FYGKAIP-------I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTTEEEEECBS---CSSEE----ETTEEEC-------G-GGSSSSEEEEECSCHHHH
T ss_pred ceEEEECCCCCcccc------cCCcceEEEeecc---cchhH----HHHhhhh-------h-hhccCCcEEEEeCCHHHH
Confidence 6778999987311 1111111111000 00000 0000000 1 122567999999999999
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEE----------EcC-------
Q 010649 358 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----------NYD------- 420 (505)
Q Consensus 358 ~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi----------~~~------- 420 (505)
+.+++.|++.++.+..+||++++++ |+++..+|||||+++++|||+| +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999999999999999999875 5566779999999999999997 99988 677
Q ss_pred ----CCCChhHHHHhhcccccCCCccEEEEEecCccHH
Q 010649 421 ----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (505)
Q Consensus 421 ----~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 454 (505)
.|.+.++|+||+||+|| |+.|. +.|+++.+..
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 89999 9999887643
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.7e-39 Score=338.86 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=190.8
Q ss_pred CCCcHHHHHHHHHHhc----C-CcEEEEccCCCchHHHHHHHHHHHHhcCCC--CCCCCCCEEEEEcccHHHHHHHH-HH
Q 010649 120 FEPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQ-QE 191 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~~vlil~Pt~~La~Q~~-~~ 191 (505)
..|+|+|.++++.+++ + +++++++|||+|||++++. ++..+..... ......+++|||+|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3799999999998875 4 5689999999999999665 4444443211 11124678999999999999999 77
Q ss_pred HHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc----cCCccCCccEEEEcCcchhhcCCCHHHH
Q 010649 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES----HNTNLRRVTYLVLDEADRMLDMGFEPQI 267 (505)
Q Consensus 192 ~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~----~~~~l~~~~~lVlDEah~~~~~~~~~~~ 267 (505)
+..|+. .+..+.++ ......+|+|+||++|...+.. ..+....+++||+||||++.... ...+
T Consensus 256 ~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 777753 23333322 1234679999999999877542 23445678999999999997653 3566
Q ss_pred HHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEE-----------------EEcCCCccc-------------ccc
Q 010649 268 KKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV-----------------IIGSPDLKA-------------NHA 317 (505)
Q Consensus 268 ~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-------------~~~ 317 (505)
..++..++ ..++++||||+..........++..+... ......... ...
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 77777774 57899999998743322222233322211 100000000 000
Q ss_pred eeeeeeccC-------hhHHHH----HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCC--------CeEEEcCCC
Q 010649 318 IRQHVDIVS-------ESQKYN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------PALSIHGDK 378 (505)
Q Consensus 318 ~~~~~~~~~-------~~~k~~----~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~--------~~~~lhg~~ 378 (505)
+........ ...+.. .+.+.+.......++||||+++++|+.+++.|.+.+. .+..+||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000000000 011222 2333444444557999999999999999999977543 277899987
Q ss_pred CHHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCC
Q 010649 379 SQAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 440 (505)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~---vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 440 (505)
+. +|..++++|++++.+ |||||+++++|+|+|++++||++++|+|+..|+||+||++|.+.
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 799999999998766 88999999999999999999999999999999999999999875
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.6e-39 Score=331.42 Aligned_cols=273 Identities=19% Similarity=0.223 Sum_probs=198.3
Q ss_pred HHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC
Q 010649 130 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (505)
Q Consensus 130 i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg 209 (505)
..++.+++++++++|||||||++|++|++..+... ++++||++||++||.|+.+.+..+ .+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS------CEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc------eEeEEecc
Confidence 44566788999999999999999999999888752 577999999999999999988732 22211111
Q ss_pred CCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch-----hhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-----MLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~-----~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
... .-..+..+.++|.+.+...+... ..+.++++|||||||+ +...++...+. ..++.|+++||
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 100 01234567788998887776653 5578999999999998 34333322211 23689999999
Q ss_pred CCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHH
Q 010649 285 ATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL 364 (505)
Q Consensus 285 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L 364 (505)
||++..+..+... ..|+...... + +. .+...+...+.+ ..+++||||++++.|+.++..|
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~~~------------~---~~-~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQDE------------I---PD-RAWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEECC------------C---CS-SCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEeccc------------C---Cc-chhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHH
Confidence 9998654322111 1222221100 0 00 000111223333 2568999999999999999999
Q ss_pred HhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEE--------------------cCCCCC
Q 010649 365 RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--------------------YDFPGS 424 (505)
Q Consensus 365 ~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~--------------------~~~p~s 424 (505)
+..++.+..+|++ +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.|
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999995 6788999999999999999999999999999 99999 779999
Q ss_pred hhHHHHhhcccccCCC-ccEEEEEecCc
Q 010649 425 LEDYVHRIGRTGRAGA-KGTAYTFFTAA 451 (505)
Q Consensus 425 ~~~~~Qr~GR~~R~g~-~g~~~~~~~~~ 451 (505)
.++|+||+||+||.|. .|.+++|++..
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 89999999885
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.1e-38 Score=319.25 Aligned_cols=269 Identities=17% Similarity=0.170 Sum_probs=193.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 214 (505)
+++++++++|||||||++|++|++..+... ++++||++||++||.|+.+.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 368999999999999999999999776652 6789999999999999998775 2344433333111
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCceEEecCCChHHHHH
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~~v~~SAT~~~~~~~ 293 (505)
.-..+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... ++.+++++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122456778899888776666 556889999999999997 333334444443332 5789999999999864321
Q ss_pred HHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEE
Q 010649 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~ 373 (505)
+... ..+...... ..+ ..+...+.+.+.+ ..+++||||+++++++.+++.|++.++.+..
T Consensus 141 ~~~~--~~~i~~~~~---------------~~~-~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPIIDEET---------------RIP-DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCEEEEC---------------CCC-SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCceeeccc---------------cCC-HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1100 011111000 000 1111222334443 2468999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCE-----------------EEEcCCCCChhHHHHhhcccc
Q 010649 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY-----------------VINYDFPGSLEDYVHRIGRTG 436 (505)
Q Consensus 374 lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~-----------------Vi~~~~p~s~~~~~Qr~GR~~ 436 (505)
+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678899999999999999999
Q ss_pred cCCC-ccEEEEEe
Q 010649 437 RAGA-KGTAYTFF 448 (505)
Q Consensus 437 R~g~-~g~~~~~~ 448 (505)
|.|. .+.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 45555555
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=287.93 Aligned_cols=215 Identities=51% Similarity=0.893 Sum_probs=188.4
Q ss_pred cCCCCCCCCCCcC-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC-C
Q 010649 91 GRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-A 168 (505)
Q Consensus 91 ~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~-~ 168 (505)
....|+|+.+|++ +++++.+++++.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++.++...... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4568999999999 7999999999999999999999999999999999999999999999999999999988653221 1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCcc
Q 010649 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (505)
Q Consensus 169 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 248 (505)
...++++||++||++|+.|+.+.+.++. ..++.+..++|+.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2347889999999999999999999986 457889999999988888888888999999999999999988888899999
Q ss_pred EEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEE
Q 010649 249 YLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (505)
Q Consensus 249 ~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (505)
+||+||||++.+++|...+..++..++++.|+++||||+|+.+.++++.++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999988764
No 54
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-37 Score=292.77 Aligned_cols=225 Identities=43% Similarity=0.730 Sum_probs=199.4
Q ss_pred ceeecCCCCC--CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcC
Q 010649 87 ITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164 (505)
Q Consensus 87 i~~~~~~~p~--~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~ 164 (505)
+.+.+...|. ++.+|+++++++.+++++...||..|+|+|.++++.+++++++++++|||+|||++|++|++.++...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 4456777777 89999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCC----CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc
Q 010649 165 PFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH 240 (505)
Q Consensus 165 ~~~----~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~ 240 (505)
... ....++++|||+||++|+.|+.+.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 311 1223578999999999999999999999888889999999999888888888888999999999999999888
Q ss_pred CCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc--CC--CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCC
Q 010649 241 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 311 (505)
Q Consensus 241 ~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~--~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (505)
...+.++++||+||||++.+++|...+..++..+ +. ..|+++||||+++++.++++.++.+|..+.+....
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 8888999999999999999999999999999854 33 68999999999999999999999999988877654
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-37 Score=342.84 Aligned_cols=335 Identities=16% Similarity=0.102 Sum_probs=231.4
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
.+|+|||.+++..++.. .++|++++||+|||++++..+...+... ...++|||||+ +|+.||..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999988864 4789999999999999887665554432 23469999999 99999999997655
Q ss_pred CCCceEEEEECCCCchHHHH---HHhcCCcEEEeChHHHHHHHHc-cCCccCCccEEEEcCcchhhcCCCH--HHHHHHH
Q 010649 198 SSKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFE--PQIKKIL 271 (505)
Q Consensus 198 ~~~i~~~~~~gg~~~~~~~~---~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~~~~--~~~~~il 271 (505)
++.+..+.++. ...... ......+|+|+|++.+...... ......++++|||||||++...... ..+..+.
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 24444443322 111111 1112468999999888532111 1123457899999999999764421 1222222
Q ss_pred HhcCCCCceEEecCCChH----HHHHHHHH----------------------------HccC------------------
Q 010649 272 SQIRPDRQTLYWSATWPK----EVEHLARQ----------------------------YLYN------------------ 301 (505)
Q Consensus 272 ~~~~~~~~~v~~SAT~~~----~~~~~~~~----------------------------~~~~------------------ 301 (505)
.......+++++|||+.. ++..+... +...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 223356679999999732 01111100 0000
Q ss_pred ----------------------------------CcEEEEcCCCcccc--ccee-e------------------------
Q 010649 302 ----------------------------------PYKVIIGSPDLKAN--HAIR-Q------------------------ 320 (505)
Q Consensus 302 ----------------------------------~~~~~~~~~~~~~~--~~~~-~------------------------ 320 (505)
...+.......... .... .
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000000000 0000 0
Q ss_pred --------------------eeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh-CCCCeEEEcCCCC
Q 010649 321 --------------------HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKS 379 (505)
Q Consensus 321 --------------------~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~ 379 (505)
.........|...+.+++.. ....++||||+++..++.++..|.. .++++..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 00223445688888888887 4567999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHH
Q 010649 380 QAERDWVLSEFKAGK--SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 457 (505)
Q Consensus 380 ~~~r~~~~~~f~~g~--~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 457 (505)
+.+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.||+||++|.|+.+.++++....+....+
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee 619 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQS 619 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHH
Confidence 999999999999998 999999999999999999999999999999999999999999999999777776555545555
Q ss_pred HHHHHHHHh
Q 010649 458 ELITILEEA 466 (505)
Q Consensus 458 ~l~~~l~~~ 466 (505)
.+.+.+.+.
T Consensus 620 ~i~~~~~~k 628 (968)
T 3dmq_A 620 VLVRWYHEG 628 (968)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 566655443
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.7e-37 Score=319.16 Aligned_cols=327 Identities=17% Similarity=0.216 Sum_probs=225.4
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|+|||.++++++. .++++|++++||+|||++++. ++..+... ....++|||||+ +|+.||.+++.++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKFA 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHHC
Confidence 78999999998874 578899999999999999765 44444432 124569999995 69999999999997
Q ss_pred CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCC
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~ 276 (505)
.. .++..++|+... .....++|+|+||+++.+... .....+++||+||||++.+.. ....+.+..+ +
T Consensus 110 ~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l-~ 176 (500)
T 1z63_A 110 PH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL-K 176 (500)
T ss_dssp TT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-C
T ss_pred CC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-c
Confidence 54 556666665432 112457999999999865433 223468999999999998764 2344555555 4
Q ss_pred CCceEEecCCChH----HHHHHHHHH--------------------------------ccCCcEEEEcCCC----ccccc
Q 010649 277 DRQTLYWSATWPK----EVEHLARQY--------------------------------LYNPYKVIIGSPD----LKANH 316 (505)
Q Consensus 277 ~~~~v~~SAT~~~----~~~~~~~~~--------------------------------~~~~~~~~~~~~~----~~~~~ 316 (505)
..+.+++|||+.. ++..+.... +..+..+.....+ ...+.
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 5678999999832 121111111 0112222111100 00000
Q ss_pred ceeeeee--------------------------------------------------------ccChhHHHHHHHHHHHh
Q 010649 317 AIRQHVD--------------------------------------------------------IVSESQKYNKLVKLLED 340 (505)
Q Consensus 317 ~~~~~~~--------------------------------------------------------~~~~~~k~~~l~~~l~~ 340 (505)
.....+. ......|...+.+++.+
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 1110000 01224566677777776
Q ss_pred hc-CCCeEEEEeCCcccHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEcccccccCCCCCCCEE
Q 010649 341 IM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATDVAARGLDVKDVKYV 416 (505)
Q Consensus 341 ~~-~~~~vlVF~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLVaT~~~~~Gidi~~~~~V 416 (505)
.. .+.++||||+++..++.++..|... ++.+..+||+++..+|..++++|+++ ..+ +|++|+++++|+|+|++++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 53 4569999999999999999999885 89999999999999999999999988 555 78999999999999999999
Q ss_pred EEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhC
Q 010649 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 467 (505)
Q Consensus 417 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 467 (505)
|++|+|||+..|.||+||++|.|+...++++..-....+.+.+.+.+..+.
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~ 467 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 467 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCS
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999876644333222233445555554433
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.7e-36 Score=283.75 Aligned_cols=213 Identities=31% Similarity=0.504 Sum_probs=180.1
Q ss_pred cCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010649 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (505)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (505)
..+.|+++.+|+++++++.+++.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567788999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcC-CcEEEeChHHHHHHHHccCCccCCccE
Q 010649 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTY 249 (505)
Q Consensus 171 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (505)
.++++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 3668999999999999999999999888888999999998877776666555 899999999999999887778889999
Q ss_pred EEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEc
Q 010649 250 LVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (505)
Q Consensus 250 lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (505)
||+||||++.+.+|...+..++..+++..|++++|||+++++.++++.++.+|..+.+.
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999998877543
No 58
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=286.57 Aligned_cols=230 Identities=33% Similarity=0.564 Sum_probs=198.3
Q ss_pred HHHHHHHhcCceeecCCCCCCCCCCcCC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010649 77 EVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 77 ~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~ 152 (505)
++..+++...+.+++.+.|.|+.+|+++ ++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 5678888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH-HHHhcCCcEEEeChH
Q 010649 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPG 231 (505)
Q Consensus 153 ~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~~~~~~~Iiv~T~~ 231 (505)
|++|++.++... ...++++||++||++|+.|+++.+.++....++.+..++++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 234678999999999999999999999888888887776654322211 112346899999999
Q ss_pred HHHHHHHcc--CCccCCccEEEEcCcchhhc---CCCHHHHHHHHHhcC-CCCceEEecCCChHHHHHHHHHHccCCcEE
Q 010649 232 RLIDMLESH--NTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (505)
Q Consensus 232 ~l~~~l~~~--~~~l~~~~~lVlDEah~~~~---~~~~~~~~~il~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 305 (505)
+|.+++... ...+.++++||+||||++.+ .+|...+..++..+. +..|+++||||+++++.++++.++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999876 46788999999999999988 578889988887764 578999999999999999999999999998
Q ss_pred EEcCC
Q 010649 306 IIGSP 310 (505)
Q Consensus 306 ~~~~~ 310 (505)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 87653
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=283.12 Aligned_cols=207 Identities=46% Similarity=0.712 Sum_probs=190.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~v 175 (505)
.+..+|+++++++.+++.++..|+..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 4567899999999999999999999999999999999999999999999999999999999999887632 35679
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-cCCccCCccEEEEcC
Q 010649 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 254 (505)
Q Consensus 176 lil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lVlDE 254 (505)
||++||++|+.|+.+.+.++....++++..++|+.....+...+..+++|+|+||++|.+.+.. ....+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988778899999999888777777788899999999999998876 456788999999999
Q ss_pred cchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEE
Q 010649 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 307 (505)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 307 (505)
||++.+.+|...+..++..++++.|+++||||+++.+.++++.++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999987754
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.9e-36 Score=278.84 Aligned_cols=210 Identities=31% Similarity=0.486 Sum_probs=183.0
Q ss_pred cCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010649 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (505)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (505)
++..|.+..+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45667888999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccE
Q 010649 171 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (505)
Q Consensus 171 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (505)
.++++||++||++|+.|+.+.+.++.... ++++..++|+.....+...+ .+++|+|+||++|.+++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 36789999999999999999999997654 78899999988776655544 46899999999999999887778899999
Q ss_pred EEEcCcchhhcCC-CHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEE
Q 010649 250 LVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (505)
Q Consensus 250 lVlDEah~~~~~~-~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (505)
||+||||++.+++ |...+..++..+++..|++++|||+++++.+++..++.+|..+.
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999987 99999999999998999999999999999999999998887664
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-35 Score=271.80 Aligned_cols=202 Identities=33% Similarity=0.576 Sum_probs=185.5
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
.+|+++++++.+++.+...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 179 ~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
+||++|+.|+.+.+.++.... ++.+..++|+.....+...+..+++|+|+||++|.+.+......+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998766 7889999999888777777778899999999999999988777889999999999999
Q ss_pred hhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEE
Q 010649 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (505)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 305 (505)
+.+.+|...+..++..++++.|++++|||+|+++.++++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998899999999999999999999999988754
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=276.51 Aligned_cols=212 Identities=35% Similarity=0.547 Sum_probs=188.0
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010649 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (505)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 174 (505)
+.++.+|+++++++.+++.+.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 466788999999999999999999999999999999999999999999999999999999999998865321 1123678
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-CCccCCccEEEEc
Q 010649 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLD 253 (505)
Q Consensus 175 vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lVlD 253 (505)
+||++||++|+.|+.+.+.+++...++.+..++|+.....+...+ .+++|+|+||++|.+.+... ...+.++++||+|
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999999999888889999999998877666555 57899999999999888764 4667899999999
Q ss_pred CcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEc
Q 010649 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (505)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (505)
|||++.+++|...+..++..+++..|+++||||+++.+.++++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999877654
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.6e-36 Score=279.15 Aligned_cols=208 Identities=35% Similarity=0.578 Sum_probs=185.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
|..+|+++++++.+++.+.+.++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 34679999999999999999999999999999999999999999999999999999999999887642 2367899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCC----CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEE
Q 010649 177 VLAPTRELAVQIQQESTKFGASS----KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVl 252 (505)
|++||++|+.|+.+.+.++.... ++.+..++|+.........+..+++|+|+||++|.+.+......+.++++||+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987765 67888899988765555555567899999999999999887778899999999
Q ss_pred cCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcC
Q 010649 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (505)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
||||++.+.+|...+..++..+++..|++++|||+++++.++++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999998999999999999999999999999998876554
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1e-35 Score=276.24 Aligned_cols=213 Identities=30% Similarity=0.525 Sum_probs=184.4
Q ss_pred cCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010649 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (505)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 170 (505)
....|+++.+|+++++++.+++.+...|+..|+|+|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~ 80 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----V 80 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----C
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----C
Confidence 34567888999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 171 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
.++++||++|+++|+.|+.+.+.++....++++..++|+.....+...+.. ++|+|+||++|.+.+......+.++++|
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 367899999999999999999999988888999999998877666555444 8999999999999998888888999999
Q ss_pred EEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEcC
Q 010649 251 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (505)
Q Consensus 251 VlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
|+||||++.+.+|...+..++..+++..|++++|||+++++.++++.++.+|..+.+..
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999998776544
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=286.83 Aligned_cols=214 Identities=29% Similarity=0.444 Sum_probs=186.5
Q ss_pred ceeecCCCCCC---CCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHH
Q 010649 87 ITVEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 87 i~~~~~~~p~~---~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
+.+.+.+.+.| +.+|+++++++.+++.+..+||..|+|+|.++|+.++.+ ++++++||||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 34445554444 678999999999999999999999999999999999987 9999999999999999999999987
Q ss_pred hcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHc-
Q 010649 162 NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES- 239 (505)
Q Consensus 162 ~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~- 239 (505)
... ..++++|||+||++||.|+++.+.+++... .+.+..++++....... ...++|+|+||++|.+++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 653 246789999999999999999999987653 67888888877653332 45689999999999999966
Q ss_pred cCCccCCccEEEEcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEEc
Q 010649 240 HNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (505)
Q Consensus 240 ~~~~l~~~~~lVlDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (505)
....+.++++|||||||++++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 556789999999999999998 689999999999999999999999999999999999999999988764
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.6e-35 Score=269.03 Aligned_cols=204 Identities=43% Similarity=0.699 Sum_probs=186.2
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
+|+++++++.+++.+.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999998876532 123467899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 180 Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
|+++|+.|+.+.+.++... +++..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998765 77888999988877777778889999999999999998877888999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEEE
Q 010649 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 307 (505)
Q Consensus 260 ~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 307 (505)
+.+|...+..++..++++.|++++|||+++.+.++++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999987654
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.5e-35 Score=311.22 Aligned_cols=275 Identities=19% Similarity=0.144 Sum_probs=206.5
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCC
Q 010649 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (505)
Q Consensus 131 ~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~ 210 (505)
...+++++++++||||||||+. ++..+.. .+..+|++||++||.|+++.+.+. ++.+..++|+.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~ 213 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEE 213 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCe
Confidence 4456788999999999999984 3444443 223599999999999999999886 46788888876
Q ss_pred CchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC-CCCceEEecCCChH
Q 010649 211 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSATWPK 289 (505)
Q Consensus 211 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~-~~~~~v~~SAT~~~ 289 (505)
..-. .......+++++|++.+. ....+++|||||||++.+.+|...+..++..++ ...+++++|||.+
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 5410 000112678888876541 246789999999999999999999999999887 7889999999953
Q ss_pred HHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCC
Q 010649 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 369 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~ 369 (505)
.+..++... ..+..+..... ........... ..+... ....+|||++++.++.++..|++.++
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r----~~~l~~~~~~l----------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKR----LTPISVLDHAL----------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCC----SSCEEECSSCC----------CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CCceEEEEeee----cchHHHHHHHH----------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 355555443 33333322111 00011000000 011111 23458999999999999999999999
Q ss_pred CeEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEcccccccCCCCCCCEEEEcCC--------------CCChhHHHHhhc
Q 010649 370 PALSIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDF--------------PGSLEDYVHRIG 433 (505)
Q Consensus 370 ~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~--------------p~s~~~~~Qr~G 433 (505)
.+..+||+|++++|..+++.|++ |+++|||||+++++|||+ ++++||+++. |.+.++|+||+|
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~G 424 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAG 424 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHT
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhc
Confidence 99999999999999999999999 889999999999999999 8999999998 779999999999
Q ss_pred ccccCCCc---cEEEEEecC
Q 010649 434 RTGRAGAK---GTAYTFFTA 450 (505)
Q Consensus 434 R~~R~g~~---g~~~~~~~~ 450 (505)
||||.|.. |.|+.++..
T Consensus 425 RAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 425 RAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp TBTCTTSSCSSEEEEESSTT
T ss_pred CCCCCCCCCCCEEEEEEecc
Confidence 99999965 665555443
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=320.55 Aligned_cols=390 Identities=15% Similarity=0.214 Sum_probs=257.6
Q ss_pred cccccccCccccCCCHHHHHHHHHhcCcee---ecCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--
Q 010649 60 EKNFYVESPSVAAMSEREVEEYRQQREITV---EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-- 134 (505)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-- 134 (505)
+.+.+.....+.....+.++.|........ .....+.....|..+...+... .-.+|+|||.+++.+++
T Consensus 178 ~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~ 251 (800)
T 3mwy_W 178 DEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFL 251 (800)
T ss_dssp TTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHH
Confidence 334444444455566777888876533211 1111222223344443222211 12379999999998776
Q ss_pred --cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCc
Q 010649 135 --KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (505)
Q Consensus 135 --~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 212 (505)
.+.++|++++||+|||++++..+...+.... ....+||||| .+|+.||.+++.++... +.+.+++|....
T Consensus 252 ~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~~p~--~~v~~~~g~~~~ 323 (800)
T 3mwy_W 252 WSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKWAPD--LNCICYMGNQKS 323 (800)
T ss_dssp HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHHSTT--CCEEECCCSSHH
T ss_pred hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHHCCC--ceEEEEeCCHHH
Confidence 6789999999999999997664443332211 1344899999 57899999999999754 667777776554
Q ss_pred hHHHHHH------------hcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCce
Q 010649 213 GPQVRDL------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (505)
Q Consensus 213 ~~~~~~~------------~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (505)
....... ...++|+|+||+.+...... +....+++|||||||++.+.. ......+..+ .....
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l-~~~~r 398 (800)
T 3mwy_W 324 RDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSF-KVANR 398 (800)
T ss_dssp HHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTS-EEEEE
T ss_pred HHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHh-hhccE
Confidence 4433322 23478999999998764332 222368899999999997643 3445555555 44567
Q ss_pred EEecCCCh----HHHHHHHHHHccC-----------------------------CcEEEEcCCCcc--cccceeeeee--
Q 010649 281 LYWSATWP----KEVEHLARQYLYN-----------------------------PYKVIIGSPDLK--ANHAIRQHVD-- 323 (505)
Q Consensus 281 v~~SAT~~----~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~~~~~~~~-- 323 (505)
+++|||+- .++..++..+... |..+........ .+......+.
T Consensus 399 l~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ 478 (800)
T 3mwy_W 399 MLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVE 478 (800)
T ss_dssp EEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEEC
T ss_pred EEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeC
Confidence 88999972 2233332222111 111100000000 0000000000
Q ss_pred ------------------------------------------------------------------------ccChhHHH
Q 010649 324 ------------------------------------------------------------------------IVSESQKY 331 (505)
Q Consensus 324 ------------------------------------------------------------------------~~~~~~k~ 331 (505)
......|+
T Consensus 479 ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~ 558 (800)
T 3mwy_W 479 LSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKM 558 (800)
T ss_dssp CCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHH
Confidence 01124577
Q ss_pred HHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEccccccc
Q 010649 332 NKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS---PIMTATDVAARG 407 (505)
Q Consensus 332 ~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~---~vLVaT~~~~~G 407 (505)
..|.++|..+.. +.++||||+....++.|...|...++.+..+||+++..+|..+++.|+++.. .+|++|.++++|
T Consensus 559 ~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~G 638 (800)
T 3mwy_W 559 VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLG 638 (800)
T ss_dssp HHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTT
T ss_pred HHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCC
Confidence 778888877644 4699999999999999999999999999999999999999999999998654 499999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCC
Q 010649 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (505)
Q Consensus 408 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (505)
||++.+++||+||+|||+..+.||+||++|.|+...+.++..-....+-..+.+.++.+..
T Consensus 639 lNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 639 INLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp CCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred CCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998655554333333445555665555443
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-34 Score=305.57 Aligned_cols=323 Identities=18% Similarity=0.228 Sum_probs=222.8
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010649 121 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l---------~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 191 (505)
.|+|||.+++.+++ .+..+|+.++||+|||++++..+...+...+ .......++|||||+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-DCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-TSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-cccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 3456899999999999997765544443322 112224569999997 899999999
Q ss_pred HHHhcCCCCceEEEEECCCCchH--HHHHHhc------CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCC
Q 010649 192 STKFGASSKIKSTCIYGGVPKGP--QVRDLQK------GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (505)
Q Consensus 192 ~~~~~~~~~i~~~~~~gg~~~~~--~~~~~~~------~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~ 263 (505)
+.+|... .+.+..++++..... ....... ..+|+|+||+.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9999755 456666776643321 1122211 37899999999865432 3334578999999999998654
Q ss_pred HHHHHHHHHhcCCCCceEEecCCChHH----H---------------HH-------------------------------
Q 010649 264 EPQIKKILSQIRPDRQTLYWSATWPKE----V---------------EH------------------------------- 293 (505)
Q Consensus 264 ~~~~~~il~~~~~~~~~v~~SAT~~~~----~---------------~~------------------------------- 293 (505)
......+..+ .....+++|||+-.+ + ..
T Consensus 209 -~~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 3334444455 356789999996211 0 00
Q ss_pred ---HHHHHcc----------CCcEE--EE--cCCCc------------------ccccc----------e----------
Q 010649 294 ---LARQYLY----------NPYKV--II--GSPDL------------------KANHA----------I---------- 318 (505)
Q Consensus 294 ---~~~~~~~----------~~~~~--~~--~~~~~------------------~~~~~----------~---------- 318 (505)
+...++. -|... .+ ..... ..... +
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0111110 01000 00 00000 00000 0
Q ss_pred ------------------ee----eeeccChhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEE
Q 010649 319 ------------------RQ----HVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (505)
Q Consensus 319 ------------------~~----~~~~~~~~~k~~~l~~~l~~~~--~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~l 374 (505)
.. .......+.|...+..++.... .+.++||||++...++.++..|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 00 0000012455566666665542 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCc---EEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEE--EEec
Q 010649 375 HGDKSQAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY--TFFT 449 (505)
Q Consensus 375 hg~~~~~~r~~~~~~f~~g~~~---vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~ 449 (505)
||+++..+|..++++|+++... +|++|+++++|+|++++++||++|+|||+..+.|++||++|.|+...++ .|++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 9999999999999999998764 8999999999999999999999999999999999999999999876544 4555
Q ss_pred Cc
Q 010649 450 AA 451 (505)
Q Consensus 450 ~~ 451 (505)
.+
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=277.83 Aligned_cols=205 Identities=38% Similarity=0.586 Sum_probs=181.7
Q ss_pred CCCcCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010649 99 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (505)
Q Consensus 99 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vl 176 (505)
.+|++++ +++.+++.+...||..|+|+|.++++.++.++++++++|||+|||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4466665 89999999999999999999999999999999999999999999999999999988764321 12367799
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHcc-CCccCCccEEEEcCc
Q 010649 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 255 (505)
Q Consensus 177 il~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lVlDEa 255 (505)
|++||++||.|+.+.+++++....+.+..++|+.....+...+..+++|+|+||++|.+.+... ...+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988889999999999888888888888999999999999888764 367889999999999
Q ss_pred chhhcCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcE
Q 010649 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYK 304 (505)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~ 304 (505)
|++.+++|...+..++..+++.+|+++||||+++++..+++.++.++..
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999998876543
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.1e-33 Score=288.29 Aligned_cols=318 Identities=21% Similarity=0.224 Sum_probs=238.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.|++.|.-+.-.+.+|+ |+.+.||+|||++|.+|++...+. +..|.||+|+..||.|-.+++..+....+
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 68888988888777766 899999999999999999877665 66699999999999999999999999999
Q ss_pred ceEEEEECCC------------------------------------------------CchHHHHHHhcCCcEEEeChHH
Q 010649 201 IKSTCIYGGV------------------------------------------------PKGPQVRDLQKGVEIVIATPGR 232 (505)
Q Consensus 201 i~~~~~~gg~------------------------------------------------~~~~~~~~~~~~~~Iiv~T~~~ 232 (505)
+.+.+++... ......+.-.-.|||+.+|...
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~E 224 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNE 224 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcc
Confidence 9999998821 0001111222348999999987
Q ss_pred HH-HHHHcc------CCccCCccEEEEcCcchhhc-C------------C---CH-------------------------
Q 010649 233 LI-DMLESH------NTNLRRVTYLVLDEADRMLD-M------------G---FE------------------------- 264 (505)
Q Consensus 233 l~-~~l~~~------~~~l~~~~~lVlDEah~~~~-~------------~---~~------------------------- 264 (505)
|- ++|... ....+.+.+.||||+|.++= . . ..
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v 304 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTI 304 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCE
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeE
Confidence 63 444321 22346689999999997540 0 0 00
Q ss_pred -------HHHHHH---------------------HHh---cCC-------------------------------------
Q 010649 265 -------PQIKKI---------------------LSQ---IRP------------------------------------- 276 (505)
Q Consensus 265 -------~~~~~i---------------------l~~---~~~------------------------------------- 276 (505)
..++.+ +.. +..
T Consensus 305 ~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 384 (822)
T 3jux_A 305 ILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEA 384 (822)
T ss_dssp EECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHH
T ss_pred EECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHH
Confidence 001110 000 000
Q ss_pred ------------------------CCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceee-eeeccChhHHH
Q 010649 277 ------------------------DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQ-HVDIVSESQKY 331 (505)
Q Consensus 277 ------------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~ 331 (505)
-.++.+||+|...+..++.+.|..+ .+.+... .......+ .+.......|.
T Consensus 385 KEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn--kp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 385 KEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH--KPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS--SCCCCEECCCEEESSHHHHH
T ss_pred HcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC--CCcceeecCcEEEecHHHHH
Confidence 0367899999988888777766543 2333221 22222222 34556788899
Q ss_pred HHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCC
Q 010649 332 NKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (505)
Q Consensus 332 ~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi 410 (505)
..+.+.+.+.. .+.++||||+|++.++.++..|++.++++.++||+..+.++..+..+++.| .|+|||++++||+||
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCc
Confidence 99999887753 567999999999999999999999999999999996666666666677665 599999999999999
Q ss_pred C--------CCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHH
Q 010649 411 K--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (505)
Q Consensus 411 ~--------~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 454 (505)
+ +..+||++++|.|...|+||+||+||.|.+|.+++|++..|.-
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred cCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 8 5679999999999999999999999999999999999998743
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.3e-35 Score=268.97 Aligned_cols=208 Identities=28% Similarity=0.527 Sum_probs=182.0
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010649 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (505)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 173 (505)
.+....+|+++++++.+++.+...+|..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 34445679999999999999999999999999999999999999999999999999999999999886542 2356
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCchHHHHHHhc-CCcEEEeChHHHHHHHHccCCccCCccEEE
Q 010649 174 IVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (505)
Q Consensus 174 ~vlil~Pt~~La~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV 251 (505)
++||++||++|+.|+.+++.++.... ++++..++|+.....+...+.. .++|+|+||++|.+++......+.++++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 79999999999999999999997765 6889999999887776666654 469999999999999988778889999999
Q ss_pred EcCcchhhc-CCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCcEEE
Q 010649 252 LDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (505)
Q Consensus 252 lDEah~~~~-~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (505)
+||||++.+ .+|...+..++..+++..|++++|||+++.+.++++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788889999999988999999999999999999999999987664
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=6.8e-33 Score=304.36 Aligned_cols=312 Identities=14% Similarity=0.118 Sum_probs=214.5
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010649 120 FEPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~--------------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La 185 (505)
..|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||+|+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999998875 367999999999999997 5566544321 2246899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccC--CccCCccEEEEcCcchhhcCC
Q 010649 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMG 262 (505)
Q Consensus 186 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lVlDEah~~~~~~ 262 (505)
.|+.+.+.+|.... +.++.+.......+. .+.+|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 99999999987531 234445555555553 468999999999998876532 2456789999999999763
Q ss_pred CHHHHHHHHHhcCCCCceEEecCCChHHH--------H-------------HHHHHHccCCcEEEEcCCCccc-------
Q 010649 263 FEPQIKKILSQIRPDRQTLYWSATWPKEV--------E-------------HLARQYLYNPYKVIIGSPDLKA------- 314 (505)
Q Consensus 263 ~~~~~~~il~~~~~~~~~v~~SAT~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~------- 314 (505)
...+..+...+ ++.++++||||+.... . +....-...|+.+.........
T Consensus 416 -~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 416 -GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp -HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred -hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 33455666666 4579999999986421 1 1112212223332221100000
Q ss_pred c----cceeeeeeccChhHHHHHHHH-HHHhh---c-------CCCeEEEEeCCcccHHHHHHHHHhCC-----------
Q 010649 315 N----HAIRQHVDIVSESQKYNKLVK-LLEDI---M-------DGSRILIFMDTKKGCDQITRQLRMDG----------- 368 (505)
Q Consensus 315 ~----~~~~~~~~~~~~~~k~~~l~~-~l~~~---~-------~~~~vlVF~~~~~~~~~l~~~L~~~~----------- 368 (505)
. ..+.+.. ......+...+.. ++... . .+.++||||+++.+|..++..|.+.+
T Consensus 494 d~~~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 0000000 1112333334333 22221 1 23589999999999999999997643
Q ss_pred -CCeE-EEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcE
Q 010649 369 -WPAL-SIHGD----------K----------SQ-----------------------------AERDWVLSEFKAGKSPI 397 (505)
Q Consensus 369 -~~~~-~lhg~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~v 397 (505)
+++. ++|++ + ++ .+|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 4554 45542 2 22 14788999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCc----cEEEEEec
Q 010649 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----GTAYTFFT 449 (505)
Q Consensus 398 LVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~----g~~~~~~~ 449 (505)
||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 678899999999999999999998753 66666665
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=235.09 Aligned_cols=181 Identities=37% Similarity=0.549 Sum_probs=151.2
Q ss_pred HHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEc
Q 010649 296 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (505)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lh 375 (505)
..|+.+|..+.+.... .....+.|.+..++...|...|.+++... ..++||||+++..++.++..|+..++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3467788877776655 55678889999999999999999998763 45899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc-cHH
Q 010649 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NAR 454 (505)
Q Consensus 376 g~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~ 454 (505)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 788
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHhhc
Q 010649 455 FAKELITILEEAGQKVSPELAAMGR 479 (505)
Q Consensus 455 ~~~~l~~~l~~~~~~i~~~l~~~~~ 479 (505)
++..+.+.++...+.+|++|.+|++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHccCcCCHHHHhhcC
Confidence 9999999999999999999999876
No 75
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=231.55 Aligned_cols=168 Identities=46% Similarity=0.707 Sum_probs=145.3
Q ss_pred ccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc
Q 010649 313 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392 (505)
Q Consensus 313 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~ 392 (505)
....++.|.+..++...|...|.+++....+..++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45677899999999999999999999987667799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCH
Q 010649 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 472 (505)
Q Consensus 393 g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~ 472 (505)
|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...++.+.+.+....+++|+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 010649 473 ELAAMGRG 480 (505)
Q Consensus 473 ~l~~~~~~ 480 (505)
+|.+|+..
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99999874
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-28 Score=256.90 Aligned_cols=318 Identities=20% Similarity=0.238 Sum_probs=234.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|+ .|+|+|..+++.+++|+ |+.+.||+|||++|.+|++.+... +..++||+||++||.|.++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 578 99999999999999998 999999999999999999766553 4569999999999999999999999
Q ss_pred CCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHH-HHHHHccC------CccC---CccEEEEcCcchhh-cCCC--
Q 010649 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLR---RVTYLVLDEADRML-DMGF-- 263 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~---~~~~lVlDEah~~~-~~~~-- 263 (505)
...++++.+++||.+. +.+....+++|+|+||++| .+++.... ..++ .+.++|+||+|+|+ +.+.
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 9999999999999874 3444455799999999999 78887642 4567 89999999999876 2211
Q ss_pred -------------HHHHHHHHHhcCCC-----------------------------------------------------
Q 010649 264 -------------EPQIKKILSQIRPD----------------------------------------------------- 277 (505)
Q Consensus 264 -------------~~~~~~il~~~~~~----------------------------------------------------- 277 (505)
...+..++..++.+
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 11222333322210
Q ss_pred ----------------------------------------------------------------------------CceE
Q 010649 278 ----------------------------------------------------------------------------RQTL 281 (505)
Q Consensus 278 ----------------------------------------------------------------------------~~~v 281 (505)
..+.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 2445
Q ss_pred EecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHH
Q 010649 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQI 360 (505)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~~~~~~l 360 (505)
+||+|...+..++.+.|..+- +.+......... -.....+.....|+..+++.+.+. ..+.||||+|.|++..+.|
T Consensus 383 GMTGTA~tE~~Ef~~iY~l~V--v~IPTn~p~~R~-D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEIYGMDV--VVVPTNRPVIRK-DFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEESSCGGGHHHHHHHHCCCE--EECCCSSCCCCE-EEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred ecCCCchHHHHHHHHHhCCCE--EEcCCCCCcccc-cCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 666666665555555554432 222211111111 122334456778888887776654 4567999999999999999
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 010649 361 TRQLR--------------------------------------------------------------------------- 365 (505)
Q Consensus 361 ~~~L~--------------------------------------------------------------------------- 365 (505)
+..|+
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEcccccccCCCCCC-------------------C----------
Q 010649 366 -MDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVAARGLDVKDV-------------------K---------- 414 (505)
Q Consensus 366 -~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLVaT~~~~~Gidi~~~-------------------~---------- 414 (505)
+.+++..++++.-...+- +++. +.| .-.|-|||++++||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 567888888876543332 2222 233 33499999999999998532 1
Q ss_pred ---------------------------------------------EEEEcCCCCChhHHHHhhcccccCCCccEEEEEec
Q 010649 415 ---------------------------------------------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (505)
Q Consensus 415 ---------------------------------------------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 449 (505)
+||-...+.|..--.|-.||+||.|.+|.+-.|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 78888889999999999999999999999998888
Q ss_pred CccH
Q 010649 450 AANA 453 (505)
Q Consensus 450 ~~~~ 453 (505)
-.|.
T Consensus 697 LeDd 700 (997)
T 2ipc_A 697 FDDD 700 (997)
T ss_dssp SSSH
T ss_pred CChH
Confidence 7763
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=6.2e-29 Score=264.36 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=134.2
Q ss_pred CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 010649 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 354 (505)
Q Consensus 276 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~ 354 (505)
...|++++|||++...... ........+...... .. .+.+.+...+...++..|... ..+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL-DP----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC-CC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC-CC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3578999999998643221 111111111111100 11 111222334555555555543 3567999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC-----CCChhHHH
Q 010649 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 429 (505)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~-----p~s~~~~~ 429 (505)
..++.++..|.+.++++..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.|..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HhhcccccCCCccEEEEEecCccHHHHHHHHH
Q 010649 430 HRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (505)
Q Consensus 430 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 461 (505)
||+||+||. ..|.+++|++..+..+...+.+
T Consensus 530 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARN-ARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999 4899999999887665544443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=7.9e-28 Score=255.73 Aligned_cols=175 Identities=20% Similarity=0.239 Sum_probs=134.9
Q ss_pred CCCceEEecCCChHHHHHHHHHHccCCcEEEEcCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 010649 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 354 (505)
Q Consensus 276 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~vlVF~~~~ 354 (505)
...|++++|||++...... ........+...... ... +.+.....+...++..|... ..+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLL-DPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCC-CCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCC-CCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4678999999997654222 111111111111111 111 11222334455555555554 3567999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCCCCCEEEEcCC-----CCChhHHH
Q 010649 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 429 (505)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~~~~~Vi~~~~-----p~s~~~~~ 429 (505)
..++.++..|++.++++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HhhcccccCCCccEEEEEecCccHHHHHHHH
Q 010649 430 HRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (505)
Q Consensus 430 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 460 (505)
||+||+||. ..|.+++|+++.+..+...+.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 789999999998766544443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.7e-27 Score=209.06 Aligned_cols=150 Identities=41% Similarity=0.611 Sum_probs=140.6
Q ss_pred cccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC
Q 010649 314 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (505)
Q Consensus 314 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 393 (505)
....+.+.+..++...|...|.+++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4456888899999999999999999875 456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHH
Q 010649 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 464 (505)
Q Consensus 394 ~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (505)
+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...++.+.+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999988888877653
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3.6e-28 Score=213.77 Aligned_cols=160 Identities=37% Similarity=0.630 Sum_probs=140.6
Q ss_pred ceeeeeeccChhH-HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC
Q 010649 317 AIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (505)
Q Consensus 317 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 395 (505)
.+.|.+..++... |...|.+++... ...++||||++++.++.++..|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4567777777666 999999999875 45789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHhCCCCCHHHH
Q 010649 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 475 (505)
Q Consensus 396 ~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~l~ 475 (505)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+.+|..+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888777777776655
Q ss_pred Hh
Q 010649 476 AM 477 (505)
Q Consensus 476 ~~ 477 (505)
++
T Consensus 162 ~~ 163 (165)
T 1fuk_A 162 TL 163 (165)
T ss_dssp TT
T ss_pred hh
Confidence 44
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=9.7e-28 Score=212.26 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=142.4
Q ss_pred cceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC
Q 010649 316 HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (505)
Q Consensus 316 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 395 (505)
..+.|.+..++...|...|.+++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45778888889999999999999875 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc-cHHHHHHHHHHHHHhCCCCCHHH
Q 010649 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 474 (505)
Q Consensus 396 ~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~i~~~l 474 (505)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++. +...++.+.+.+.....++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999976 45677888877776666777765
Q ss_pred HH
Q 010649 475 AA 476 (505)
Q Consensus 475 ~~ 476 (505)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 44
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.3e-27 Score=207.94 Aligned_cols=151 Identities=30% Similarity=0.539 Sum_probs=133.8
Q ss_pred ccceeeeeeccChhH-HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC
Q 010649 315 NHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (505)
Q Consensus 315 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g 393 (505)
...+.|.+..++... |...|.+++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456788887777655 999999988765 456999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEcCCC------CChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 394 KSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 394 ~~~vLVaT~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
+.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 89999999999999999999999999999988877777766543
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=5.2e-26 Score=208.20 Aligned_cols=147 Identities=35% Similarity=0.531 Sum_probs=132.8
Q ss_pred eeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010649 319 RQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (505)
Q Consensus 319 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 398 (505)
.+....+....|...|.+++.... ..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 344556677889999999998654 5799999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 399 VaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
|||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988888877766543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.9e-25 Score=214.01 Aligned_cols=146 Identities=34% Similarity=0.532 Sum_probs=129.9
Q ss_pred eeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcE
Q 010649 318 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 397 (505)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 397 (505)
+.+.+..+....|...|.+++.... ..++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566677788899999999998765 679999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHH
Q 010649 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 464 (505)
Q Consensus 398 LVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (505)
||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.|++|+++.+...+..+.+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998777766665543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=205.97 Aligned_cols=167 Identities=23% Similarity=0.213 Sum_probs=123.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH-HHHHHHHh
Q 010649 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKF 195 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q-~~~~~~~~ 195 (505)
.....|+|+|.++++.+++++++++.+|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.+.++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999998877654210 1125679999999999999 88888888
Q ss_pred cCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccC------CccCCccEEEEcCcchhhcCCCHHHHH-
Q 010649 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN------TNLRRVTYLVLDEADRMLDMGFEPQIK- 268 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~------~~l~~~~~lVlDEah~~~~~~~~~~~~- 268 (505)
... .+.+..++|+.........+...++|+|+||++|.+.+.... ..+.++++|||||||++.+.++...+.
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 654 678888888877666555556678999999999999887643 557889999999999998776555443
Q ss_pred HHHHhc-------------CCCCceEEecCC
Q 010649 269 KILSQI-------------RPDRQTLYWSAT 286 (505)
Q Consensus 269 ~il~~~-------------~~~~~~v~~SAT 286 (505)
.++... .+.+++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332221 167899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=9.7e-27 Score=205.65 Aligned_cols=149 Identities=33% Similarity=0.535 Sum_probs=134.8
Q ss_pred ceeeeeeccCh-hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC
Q 010649 317 AIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (505)
Q Consensus 317 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~ 395 (505)
.+.|.+..++. ..|...|.+++... ...++||||+++..++.++..|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 35566666666 78888888888764 44689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCccHHHHHHHHHHHHHh
Q 010649 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (505)
Q Consensus 396 ~vLVaT~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (505)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.++++++..+...+..+.+.+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999999999999999999999888887777765443
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=4e-23 Score=215.42 Aligned_cols=101 Identities=15% Similarity=0.213 Sum_probs=66.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE--EcccccccCCCCC----CCEEE
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT--ATDVAARGLDVKD----VKYVI 417 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV--aT~~~~~Gidi~~----~~~Vi 417 (505)
.+++|||++|...++.++..|.. + ...+++.. .+|..+++.|+++. .||+ +|..+++|||+|+ +++||
T Consensus 384 ~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp SSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 46899999999999999998865 2 34556654 46888999999864 5777 7899999999998 88999
Q ss_pred EcCCCCC-h-----------------------------hHHHHhhcccccCCCccEEEEEecC
Q 010649 418 NYDFPGS-L-----------------------------EDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 418 ~~~~p~s-~-----------------------------~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
++++|.. + ..+.|.+||+-|...+--++++++.
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 9998851 1 2356999999998665444555544
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.91 E-value=7.6e-25 Score=210.14 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=128.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
.+|+|+|.++++.++.+.+.++++|||+|||+++++++...+... ..++|||+|+++|+.||.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 489999999999999888899999999999999988777665541 3479999999999999999999998777
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCc
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~ 279 (505)
...+..++++..... ......+|+|+||+.+.+. ....+.++++||+||||++. ...+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCe
Confidence 778888888876533 1224589999999887443 22346789999999999987 4578888888888999
Q ss_pred eEEecCCChHHHH
Q 010649 280 TLYWSATWPKEVE 292 (505)
Q Consensus 280 ~v~~SAT~~~~~~ 292 (505)
++++|||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999976543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=6.5e-21 Score=199.47 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=197.8
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~----~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+++|+|.+.+.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 789999998765 4478999999999999999999999972 6789999999999999999999987
Q ss_pred CCCCceEEEEECCCCc---------------------------------hHHH------------------HHHhcCCcE
Q 010649 197 ASSKIKSTCIYGGVPK---------------------------------GPQV------------------RDLQKGVEI 225 (505)
Q Consensus 197 ~~~~i~~~~~~gg~~~---------------------------------~~~~------------------~~~~~~~~I 225 (505)
...++++..+.|.... .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7667888877763210 1111 223456899
Q ss_pred EEeChHHHHHHHHccCCcc-CCccEEEEcCcchhhcCC------------------------------------------
Q 010649 226 VIATPGRLIDMLESHNTNL-RRVTYLVLDEADRMLDMG------------------------------------------ 262 (505)
Q Consensus 226 iv~T~~~l~~~l~~~~~~l-~~~~~lVlDEah~~~~~~------------------------------------------ 262 (505)
||+|+..|.+...+....+ ....++||||||++.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999988755443322 4678999999998765 1
Q ss_pred -------------CHHHHHHH----------------------------HH----------------------------h
Q 010649 263 -------------FEPQIKKI----------------------------LS----------------------------Q 273 (505)
Q Consensus 263 -------------~~~~~~~i----------------------------l~----------------------------~ 273 (505)
+...+..+ +. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 00 0
Q ss_pred cCCC-CceEEecCCChHHHHHHHHHHccC-CcEE-----EEcCCCcccccceeeeee-ccC------hhHHHHHHHHHHH
Q 010649 274 IRPD-RQTLYWSATWPKEVEHLARQYLYN-PYKV-----IIGSPDLKANHAIRQHVD-IVS------ESQKYNKLVKLLE 339 (505)
Q Consensus 274 ~~~~-~~~v~~SAT~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~-~~~------~~~k~~~l~~~l~ 339 (505)
+... ..+|++|||+.+ ...+.+.+..+ +... .+.++. ..+..-.+. ..+ +......+.+.+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf---~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV---SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC---SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC---CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 0122 678888999876 33344433332 2211 012221 111111110 011 1222344555444
Q ss_pred hhc--CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc--ccccccCCCC---C
Q 010649 340 DIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAARGLDVK---D 412 (505)
Q Consensus 340 ~~~--~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT--~~~~~Gidi~---~ 412 (505)
+.. ..+.+|||++|...++.+++. .+.++..-..+++ +..+++.|+...-.||+|| ..+.+|||+| +
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 432 345899999999999998863 3444443333445 3557788864444799998 6999999999 3
Q ss_pred --CCEEEEcCCCCC------------------------------hhHHHHhhcccccCCCccEEEEEecC
Q 010649 413 --VKYVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 413 --~~~Vi~~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
++.||...+|.. +....|.+||+-|..++--++++++.
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 788888776641 11234899999998666555555554
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=186.70 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=131.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010649 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (505)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~ 188 (505)
.+.+.+.......++++|.++++.+..+++++++||||||||+++.++++..+.... ......+++++|+++|+.|+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHHH
Confidence 344444444455789999999999999999999999999999998888888766532 12245899999999999999
Q ss_pred HHHHHHhcC-CCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchh-hcCCCH-H
Q 010649 189 QQESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFE-P 265 (505)
Q Consensus 189 ~~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~-~~~~~~-~ 265 (505)
.+.+..... ..+..+..-...... .....++|+|+||++|.+++.. .+.++++||+||||++ .+++|. .
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHH
Confidence 988876543 233333322211100 0013478999999999999876 3789999999999986 666666 3
Q ss_pred HHHHHHHhcCCCCceEEecCCChHHHHHHHHHHccCCc
Q 010649 266 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 303 (505)
Q Consensus 266 ~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~ 303 (505)
.++.++... ++.|+++||||++.+. +.+.+...|+
T Consensus 198 ~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 198 VLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 555555544 6899999999999766 5555554443
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.83 E-value=2.4e-19 Score=189.03 Aligned_cols=317 Identities=18% Similarity=0.174 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHH----HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 120 FEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 120 ~~~~~~Q~~~i~~----~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
++|||.|.+.+.. +.+++++++.||||+|||++|++|++.++... +++++|++||++|+.|+.+++..+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHH
Confidence 5789999999864 45789999999999999999999999988652 578999999999999999999988
Q ss_pred cCCCCceEEEEECCCCc---hH---------------H------------------------------------------
Q 010649 196 GASSKIKSTCIYGGVPK---GP---------------Q------------------------------------------ 215 (505)
Q Consensus 196 ~~~~~i~~~~~~gg~~~---~~---------------~------------------------------------------ 215 (505)
.....++++.+.|+.+. .. .
T Consensus 75 ~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l 154 (620)
T 4a15_A 75 SSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEF 154 (620)
T ss_dssp HHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHH
T ss_pred hhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHH
Confidence 66556666665553210 00 0
Q ss_pred --------------HHHHhcCCcEEEeChHHHHHHHHccC----C-ccCCccEEEEcCcchhhcC---------------
Q 010649 216 --------------VRDLQKGVEIVIATPGRLIDMLESHN----T-NLRRVTYLVLDEADRMLDM--------------- 261 (505)
Q Consensus 216 --------------~~~~~~~~~Iiv~T~~~l~~~l~~~~----~-~l~~~~~lVlDEah~~~~~--------------- 261 (505)
.+.....+||||+.+..|++...+.. . ....-.++||||||++.+.
T Consensus 155 ~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~ 234 (620)
T 4a15_A 155 YDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLN 234 (620)
T ss_dssp HHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHH
T ss_pred HHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHH
Confidence 00111236899999987665432211 0 1234569999999975310
Q ss_pred -----------CC-------HHH-------HH-----------------------------------HH-------HH--
Q 010649 262 -----------GF-------EPQ-------IK-----------------------------------KI-------LS-- 272 (505)
Q Consensus 262 -----------~~-------~~~-------~~-----------------------------------~i-------l~-- 272 (505)
.+ ... +. .+ ..
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 314 (620)
T 4a15_A 235 RADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYV 314 (620)
T ss_dssp HHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred -----------------------h---cC------------------------------CCCceEEecCCChHHHHHHHH
Q 010649 273 -----------------------Q---IR------------------------------PDRQTLYWSATWPKEVEHLAR 296 (505)
Q Consensus 273 -----------------------~---~~------------------------------~~~~~v~~SAT~~~~~~~~~~ 296 (505)
. .. ....+|++|||+.+ ...+.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~ 393 (620)
T 4a15_A 315 ENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSD 393 (620)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHH
T ss_pred HhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHH
Confidence 0 00 01245788999975 444444
Q ss_pred HHccCCcEEEEcCCCcccccceeeee-eccC------hhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhC
Q 010649 297 QYLYNPYKVIIGSPDLKANHAIRQHV-DIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD 367 (505)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~k~~~l~~~l~~~~--~~~~vlVF~~~~~~~~~l~~~L~~~ 367 (505)
.+..+...+.+.++.. ..+....+ ...+ +......+.+.|.+.. ..+.+|||++|...++.++..|+.
T Consensus 394 ~lGl~~~~~~~~spf~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~- 470 (620)
T 4a15_A 394 ITGFEIPFKKIGEIFP--PENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF- 470 (620)
T ss_dssp HHCCCCCEEECCCCSC--GGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS-
T ss_pred HhCCCceeeecCCCCC--HHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh-
Confidence 4433333344443321 11111111 1111 1111233333333321 245799999999999999988872
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc--cccccCCCCC--CCEEEEcCCCCC-------------------
Q 010649 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVINYDFPGS------------------- 424 (505)
Q Consensus 368 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~--~~~~Gidi~~--~~~Vi~~~~p~s------------------- 424 (505)
+... ..-+++..++..+++.|+ ++-.||+++. .+.+|||+|+ +..||...+|..
T Consensus 471 -~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 471 -EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp -CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred -cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2222 444555678999999999 8888999984 8999999997 678998887751
Q ss_pred ----------hhHHHHhhcccccCCCccEEEEEecC
Q 010649 425 ----------LEDYVHRIGRTGRAGAKGTAYTFFTA 450 (505)
Q Consensus 425 ----------~~~~~Qr~GR~~R~g~~g~~~~~~~~ 450 (505)
+....|.+||+-|...+--++++++.
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11236999999998666545555543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=2.4e-20 Score=173.50 Aligned_cols=139 Identities=19% Similarity=0.134 Sum_probs=110.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
..|+++|.++++.+++++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 58999999999999999899999999999999988766542 345999999999999999999985
Q ss_pred Cce-EEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCC
Q 010649 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 200 ~i~-~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~ 278 (505)
++. +..+.|+... ..+|+|+|++.+...... ...++++|||||||++.+..+. .++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhc-cCC
Confidence 366 6666665532 469999999998765542 1245899999999999876543 444444 467
Q ss_pred ceEEecCCChHH
Q 010649 279 QTLYWSATWPKE 290 (505)
Q Consensus 279 ~~v~~SAT~~~~ 290 (505)
+++++|||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998763
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.82 E-value=3.3e-20 Score=175.51 Aligned_cols=127 Identities=19% Similarity=0.264 Sum_probs=100.7
Q ss_pred cChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 010649 325 VSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTA 400 (505)
Q Consensus 325 ~~~~~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLVa 400 (505)
.....|+..|.++|.... .+.++||||++...++.++..|... ++++..+||++++.+|..+++.|+++ ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999998763 4579999999999999999999885 99999999999999999999999998 677 7889
Q ss_pred cccccccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEE--EEEecCc
Q 010649 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA--YTFFTAA 451 (505)
Q Consensus 401 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 451 (505)
|+++++|+|++.+++||+||+|||+..|.||+||++|.|+.+.+ +.+++.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999998765 4455554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.93 E-value=4.8e-09 Score=110.40 Aligned_cols=146 Identities=23% Similarity=0.334 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchH--HHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT--~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.++|.++++.++.++.+++.+++|+||| +.++++++..+.. ..+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4455555554321 1256799999999999999888776433222
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCce
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (505)
+..... ..... ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 110000 00000 00000 01122222221 1 11112223378999999999 444 66788889999888898
Q ss_pred EEecCC
Q 010649 281 LYWSAT 286 (505)
Q Consensus 281 v~~SAT 286 (505)
|++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 887543
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.75 E-value=1e-06 Score=93.17 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
...+++.|.+|+..++....+++.+|+|+|||.+.. .++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 457899999999999887778999999999998743 355555432 2567999999999999999888764
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.71 E-value=5.3e-07 Score=95.86 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~-~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|++-|.+|+..++..++ .||++|+|+|||.+.. .++.++..+ +.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 579999999999987665 7899999999998744 455555553 5679999999999999988887653
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.68 E-value=3.6e-06 Score=90.93 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
...+++.|.+|+..++.+.-.++.+|+|+|||.+. ..++.++... .+.++|+++||..-+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45789999999999988777899999999999874 3455555542 2567999999999999998888764
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.2e-06 Score=91.36 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+..+++.|.+|+..++.+.-++|.||+|+|||.+..- ++.++... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 4578999999999998877789999999999987433 44444431 14569999999999999999888753
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.58 E-value=1.9e-06 Score=87.72 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=79.9
Q ss_pred cCCCCCcHHHHHHHHHHhcC----C-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010649 117 AGFFEPTPIQAQGWPMALKG----R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (505)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~----~-~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 191 (505)
..|..|++-|.+++..++.. . .+++.|+.|+|||.+. ..++..+.... ...+++++||...|..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 45678899999999876532 3 7999999999999763 44566665531 23699999998887766655
Q ss_pred HHHhcCCCCceEEEEECCCCchHHHHHHhc------CCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHH
Q 010649 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQK------GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (505)
Q Consensus 192 ~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~------~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~ 265 (505)
+.. .+..++ ..+.. ....+.. .....+.++++||+||++.+. ..
T Consensus 94 ~~~-------~~~T~h---------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~ 143 (459)
T 3upu_A 94 SGK-------EASTIH---------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RK 143 (459)
T ss_dssp HSS-------CEEEHH---------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HH
T ss_pred hcc-------chhhHH---------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HH
Confidence 411 110000 00000 0000000 122345678999999999754 45
Q ss_pred HHHHHHHhcCCCCceEEec
Q 010649 266 QIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 266 ~~~~il~~~~~~~~~v~~S 284 (505)
.+..++..+....+++++.
T Consensus 144 ~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 144 LFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhccCCCEEEEEC
Confidence 6666666665555555443
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.47 E-value=7.6e-07 Score=92.73 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 199 (505)
..+++.|.+++..++.++.+++.+++|+|||.+. ..++..+... +.++++++||...+..+.+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~~----- 254 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL-------GLEVGLCAPTGKAARRLGEVTGR----- 254 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHTS-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhcc-----
Confidence 3689999999999999889999999999999763 3344444442 56799999999888776654321
Q ss_pred CceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHH----HHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcC
Q 010649 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM----LESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (505)
Q Consensus 200 ~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~----l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~ 275 (505)
. ..|..+++.. +.........+++|||||++.+. ...+..++..++
T Consensus 255 --~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 255 --T------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp --C------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred --c------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 0 0111111100 01112234468999999999764 557777888887
Q ss_pred CCCceEEec
Q 010649 276 PDRQTLYWS 284 (505)
Q Consensus 276 ~~~~~v~~S 284 (505)
...+++++.
T Consensus 305 ~~~~lilvG 313 (574)
T 3e1s_A 305 PGARVLLVG 313 (574)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 777777653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.34 E-value=3.9e-05 Score=81.63 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..+++-|.+++.. ....++|.|+.|||||.+.+- -+.++.... .....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~-ri~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVH-RIAWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHH-HHHHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 356799999999999988544 334444321 1123469999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.26 E-value=7.6e-06 Score=77.44 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=90.6
Q ss_pred cChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010649 325 VSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (505)
Q Consensus 325 ~~~~~k~~~l~~~l~~~~~-~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (505)
+..+.|+..|.++|..... ++++|||++..+..+.+.++|...++.+..+.|.....++. -.+....+.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECC
Confidence 3468899999999887654 45999999999999999999999999999999985543221 12345555555766
Q ss_pred ccccCC-----CCCCCEEEEcCCCCChhHH-HHhhcccccCC--C--ccEEEEEecCcc
Q 010649 404 AARGLD-----VKDVKYVINYDFPGSLEDY-VHRIGRTGRAG--A--KGTAYTFFTAAN 452 (505)
Q Consensus 404 ~~~Gid-----i~~~~~Vi~~~~p~s~~~~-~Qr~GR~~R~g--~--~g~~~~~~~~~~ 452 (505)
..-|+| +..++.||.||..|++..- +|.+-|+.|.+ + .-.++.+++.+.
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 666776 6789999999999999885 99999999973 2 456777777654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.57 E-value=0.00058 Score=66.90 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
.|+|+|...+..+...+.+++..+-+.|||.++...++..+... .+..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998765556689999999999987666555544432 25679999999999988887777653
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.53 E-value=0.00029 Score=69.95 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=63.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
-.++.|+.|+|||... ...+ . ....+|++||++++..|.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~-~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRV-N--------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHC-C--------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEEcCCCCCHHHHH----HHHh-c--------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 3688999999999852 2222 2 123799999999999988887543110
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecC
Q 010649 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (505)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SA 285 (505)
.....-|.|.++++- .........+++||||||-.+ + ...+..++...+. .+++++.-
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEEC
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecC
Confidence 011334677666432 222222234889999999854 3 3344445555543 55555543
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.30 E-value=0.0034 Score=65.66 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
.|+|+|...+..+...+..++..+-++|||.+....++..+... .+..+++++|+...|..+.+.++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 68999999998775567789999999999987665555554442 2557999999999999988888776544
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.17 E-value=0.0016 Score=56.73 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEccCCCchHHHHH
Q 010649 123 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 123 ~~~Q~~~i~~~l---------~~~~~li~a~TGsGKT~~~~ 154 (505)
.+.|.+++..+. .++.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 345555555443 36789999999999997644
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.16 E-value=0.0011 Score=58.44 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
++=.++.+++|+|||..++- ++..+... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHHC-------CCEEEEEEecc
Confidence 34478889999999987554 44444332 66799999873
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.12 E-value=0.00048 Score=62.17 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|.-.++.+++|+|||+.++- ++..+... +.+++++.|...- .-...+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~~-------g~kVli~~~~~d~-----r~~~~i~srlG~~------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEYA-------DVKYLVFKPKIDT-----RSIRNIQSRTGTS------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCCG-----GGCSSCCCCCCCS-------------
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHhc-------CCEEEEEEeccCc-----hHHHHHHHhcCCC-------------
Confidence 44578889999999987554 44444332 5668998876410 0000111111110
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhh
Q 010649 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 259 (505)
-..+.+.+.+.+.+.+.... .-.++++|||||++.+.
T Consensus 66 ------~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ------LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ------SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ------ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 01234566666766665432 22457899999999754
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.09 E-value=0.00064 Score=60.48 Aligned_cols=37 Identities=16% Similarity=-0.011 Sum_probs=26.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
=.++.+++|+|||+.++-.+...... +.+++++.|..
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCI 66 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEecc
Confidence 35788999999998755544433333 67799999975
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.05 E-value=0.0015 Score=57.30 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
++-.++.+|+|+|||+.++- ++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeecc
Confidence 45578999999999987544 33333331 56799998873
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.007 Score=57.62 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=20.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
+.++++.+|+|+|||.++-. ++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 45799999999999987443 5566544
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.76 E-value=0.0029 Score=56.84 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
++=.++.+++|+|||..++-.+...... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 4457888999999998755544433332 67799998864
No 113
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.61 E-value=0.0025 Score=56.57 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
|.=.++.+++|+|||...+- .+...... +.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr-~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIR-RLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCceEEEEecc
Confidence 34468899999999976443 34444332 56699999964
No 114
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.58 E-value=0.0068 Score=58.52 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 122 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 122 ~~~~Q~~~i~~~l----~~~---~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
++|||.+++..+. +++ .+++.+|.|+|||..+.. +...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHhC
Confidence 4788888876654 343 389999999999987554 4444443
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.43 E-value=0.011 Score=56.56 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
..+++.+|+|+|||..+-. +...+.
T Consensus 38 ~~lll~G~~GtGKT~la~~-i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQA-AGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHHH
Confidence 5799999999999986443 444443
No 116
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.37 E-value=0.0056 Score=63.86 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010649 121 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~--~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 198 (505)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 689999999998876 33478899999999965433 4444332 269999997665433332211
Q ss_pred CCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCC
Q 010649 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (505)
Q Consensus 199 ~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~ 278 (505)
.|-+..|+.+.. .+...++||||||=.+. .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 133446655321 13458899999999875 67777777533
Q ss_pred ceEEecCC
Q 010649 279 QTLYWSAT 286 (505)
Q Consensus 279 ~~v~~SAT 286 (505)
..++||.|
T Consensus 280 ~~v~~~tT 287 (671)
T 2zpa_A 280 PRTLLTTT 287 (671)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEec
Confidence 23566666
No 117
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.37 E-value=0.019 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
...+++.+|+|+|||..+.. +...+
T Consensus 43 ~~~vll~G~~G~GKT~la~~-~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG-LAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH-HHHHH
T ss_pred CCceEEECCCCCCHHHHHHH-HHHHH
Confidence 45699999999999976443 34444
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.35 E-value=0.0019 Score=54.35 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~ 153 (505)
.++.+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778999999999999753
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.35 E-value=0.0093 Score=59.29 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=40.4
Q ss_pred CCccEEEEcCcchhh---cCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 245 RRVTYLVLDEADRML---DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 245 ~~~~~lVlDEah~~~---~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
..++++|+|++-++. +..+...+..+...+.++.-++.++|+...+....++.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468899999998654 3345677777777788888788888887666666665554
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.25 E-value=0.0058 Score=53.42 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
++=.++.+|+|+|||...+- ++.+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~-~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMR-RVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHH-HHHHHHHc-------CCeEEEEccc
Confidence 44578899999999965333 44443332 5669999886
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.24 E-value=0.023 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
+.+++.+|+|+|||..+.. +...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6799999999999986443 444443
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.20 E-value=0.1 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
..+++.+|+|+|||..+.. +...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~-~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG-LAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH-HHHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHHH
Confidence 5699999999999986443 444443
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.036 Score=54.21 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
...+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 124
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.14 E-value=0.0063 Score=64.82 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 197 (505)
.|+|-|.+++... ...++|.|..|||||.+.+--+...+.... -....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999753 567999999999999874443333332211 1235699999999999999999987654
No 125
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.03 E-value=0.073 Score=46.51 Aligned_cols=140 Identities=16% Similarity=0.062 Sum_probs=73.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCCCchH-
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGP- 214 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~- 214 (505)
..+++..++|.|||.+++--++..+.. +.+|+|+.-.+. ....=.+.+.++. +.+...--+-....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L~----v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPHG----VEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGGT----CEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhCC----cEEEEcccccccCCC
Confidence 468888999999999988777776665 778999843221 0000011222321 22211111110000
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCC--CHHHHHHHHHhcCCCCceEEecCCChHHHH
Q 010649 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (505)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~--~~~~~~~il~~~~~~~~~v~~SAT~~~~~~ 292 (505)
....... ..-..| ..... ...-.++++||+||+-.....+ -.+.+..++...+....+|+.+--.|+++.
T Consensus 97 ~~~~~~~------~a~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTA------ACMAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHH------HHHHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHH------HHHHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 0000000 001111 11111 1222568999999998655443 245677777776677777777777777776
Q ss_pred HHHH
Q 010649 293 HLAR 296 (505)
Q Consensus 293 ~~~~ 296 (505)
+.+.
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 6653
No 126
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.00 E-value=0.042 Score=51.07 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998654
No 127
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.97 E-value=0.015 Score=62.27 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
..|+|-|.+++.. ....++|.|..|||||.+.+- -+.++.... .-....+|+|+.|+..|.++.+.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~-ri~~ll~~~---~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTH-RIAYLMAEK---HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTT---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHH-HHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999975 346899999999999987444 334444321 1123469999999999999988887753
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.87 E-value=0.038 Score=55.35 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=25.8
Q ss_pred CccEEEEcCcchhhcC-CCHHHHHHHHHhc-CCCCceEEecCCChH
Q 010649 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQI-RPDRQTLYWSATWPK 289 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~-~~~~~~~~il~~~-~~~~~~v~~SAT~~~ 289 (505)
..++|+|||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 4679999999998763 1233344444433 344566665544343
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.87 E-value=0.021 Score=47.60 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.9
Q ss_pred HhcCCcEEEEccCCCchHHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~ 154 (505)
+....++++.+|+|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3456789999999999998644
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.81 E-value=0.011 Score=56.21 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
+.++++.+|+|+|||..+.. +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57899999999999986543 444444
No 131
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.78 E-value=0.028 Score=60.39 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGL 408 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gi 408 (505)
+.-++.....+.+++|.++++.-|...++.+++ .++.+..+||+++..++..+++.+.+|+.+|+|+| ..+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 333344444467899999999988877776654 47899999999999999999999999999999999 5556678
Q ss_pred CCCCCCEEEE
Q 010649 409 DVKDVKYVIN 418 (505)
Q Consensus 409 di~~~~~Vi~ 418 (505)
++.++.+||.
T Consensus 487 ~~~~l~lVVI 496 (780)
T 1gm5_A 487 HFKNLGLVII 496 (780)
T ss_dssp CCSCCCEEEE
T ss_pred hccCCceEEe
Confidence 8888888874
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.72 E-value=0.047 Score=48.49 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
....+|||||+|.+.... ...+..++........+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 456799999999876432 44555566665555555555443
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.71 E-value=0.039 Score=51.64 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHH-HHHHHHH--HhcCCcEEEEccCCCchHHHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPI-QAQGWPM--ALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~-Q~~~i~~--~l~~~~~li~a~TGsGKT~~~~ 154 (505)
|-.+|+++.-.+..++.+...-. .+. ..+.+.. +...+.+++.+|+|+|||..+-
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34567877666666666543210 011 1111111 1235679999999999998643
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.67 E-value=0.041 Score=53.86 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=22.4
Q ss_pred EEEEcCcchhhcCCCHHH-HHHHHHhcCCCCceEEecCC
Q 010649 249 YLVLDEADRMLDMGFEPQ-IKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 249 ~lVlDEah~~~~~~~~~~-~~~il~~~~~~~~~v~~SAT 286 (505)
+|||||+|.+........ +..++... ....+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 899999999876532333 44554444 44455555544
No 135
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.51 E-value=0.025 Score=64.38 Aligned_cols=71 Identities=25% Similarity=0.238 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
++++-|.++|..- +.+++|.|..|||||.+.+--++..+.... ..-...++|+|++|+..|.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6799999999764 789999999999999985554444444321 0112446999999999999999888764
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.50 E-value=0.031 Score=53.45 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCccEEEEcCcchhh-cCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 245 ~~~~~lVlDEah~~~-~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
....+||+||+|.+. .. ....+..++.......++|+.|..
T Consensus 104 ~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEEEeCC
Confidence 367899999999986 32 245555666665556666664443
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.44 E-value=0.025 Score=51.22 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.+..+++.+|+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.39 E-value=0.028 Score=55.14 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+|+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998643
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.28 E-value=0.041 Score=54.66 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=33.3
Q ss_pred CccEEEEcCcchhhcC-CCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~-~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.++++|+|.+=+.... .....+..+.....++.-++.+.||...+....+..|.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 4678888888654321 13344555666666777777778877655555555554
No 140
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.088 Score=52.25 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=34.9
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010649 95 PKPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
..|-.+|++.+--+.+.+.+...= +..|.-++...+ ...+.+|+.+|+|+|||+.+-
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 356788999887777776665321 112222222111 123679999999999998643
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.12 E-value=0.1 Score=49.83 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCchHHHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-----~~~~~li~a~TGsGKT~~~~ 154 (505)
|-.+|+++.-.+.+.+.+...-. .|. ..+.+. ..+.+++.+|+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34568887666666666643210 010 001111 13569999999999998654
No 142
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.14 Score=50.14 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCC---CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGF---FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
|-.+|++.+=-+...+.+...=. ..|--++.-. +...+.+|+.+|+|+|||+.+-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHHH
Confidence 55788988655555555543211 1111111111 1123689999999999998643
No 143
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.061 Score=50.96 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=26.3
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
....+++|+||||.|.... .+.+.+.++..++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3567899999999986443 345556666555555555554
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.93 E-value=0.034 Score=52.67 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
.++++.+|+|+|||..+-.
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
No 145
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.84 E-value=0.22 Score=48.34 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+.+++.+|+|+|||..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.73 E-value=0.066 Score=52.20 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
+..+++.+|+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.71 E-value=0.059 Score=50.99 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHH-HHH-HH-HhcCCcEEEEccCCCchHHHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQA-QGW-PM-ALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~i-~~-~l~~~~~li~a~TGsGKT~~~~ 154 (505)
|-.+|+++.-.+.+.+.+...-. .|... +.+ .. +..++.+++.+|+|+|||+.+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34668887655666555543200 01000 001 11 1235679999999999998644
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.65 E-value=0.44 Score=42.53 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=16.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
.+++.+|+|+|||..+.. +...+
T Consensus 47 ~~ll~G~~G~GKT~l~~~-~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL-LAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Confidence 589999999999976433 33443
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.46 E-value=0.23 Score=47.58 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
.++++.+|+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999998644
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.09 Score=50.00 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
.+..+||+||+|.+.... ...+..++...+....+|+.+..
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 456799999999986432 34455566665555555554433
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.38 E-value=0.092 Score=47.64 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
.|.-+++.+++|+|||..++-.+. .+... +..++++... +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~-~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW-NGLKM-------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH-HHHHT-------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHhc-------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 456789999999999986544333 33221 3347777643 2334555555544
No 152
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.31 Score=48.45 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhcCCcEEEEccCCCchHHHHH
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~--~l~~~~~li~a~TGsGKT~~~~ 154 (505)
.|-.+|++.+=-+.+.+.|...=. .|.. .+.+.. +..-+.+|+.+|+|+|||+.+-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 455789998766666666654211 1110 111111 1124679999999999998643
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.05 E-value=0.2 Score=48.65 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
....+|||||+|.+.... ...+.+++...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456799999999886432 344445555444444444444
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.18 Score=48.45 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
....+|++||+|.+.... ...+..++........+++.+..
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeCc
Confidence 356799999999886432 34555666665555556655433
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.91 E-value=0.099 Score=50.48 Aligned_cols=42 Identities=7% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
.+.+++|+||+|.+ +......+.+++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 46789999999994 4334566777777766666666666544
No 156
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.87 E-value=0.19 Score=49.67 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccc---ccCCC
Q 010649 338 LEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA---RGLDV 410 (505)
Q Consensus 338 l~~~~~~~~vlVF~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~---~Gidi 410 (505)
+.....+.++||.++++.-+..+++.++. .++.+..+||+.+..++...++.+..++.+|+|+|. .+. .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334567999999999999999999988 588999999999999999999999999999999994 221 12555
Q ss_pred CCCCEEEEcC
Q 010649 411 KDVKYVINYD 420 (505)
Q Consensus 411 ~~~~~Vi~~~ 420 (505)
.++.+||.-.
T Consensus 138 ~~~~~iViDE 147 (414)
T 3oiy_A 138 KRFDFVFVDD 147 (414)
T ss_dssp CCCSEEEESC
T ss_pred ccccEEEEeC
Confidence 6778777543
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.68 E-value=0.76 Score=41.88 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+++.+|+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999998644
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.63 E-value=0.26 Score=44.06 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
.|.-+++.+|+|+|||..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 356689999999999976443
No 159
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.61 E-value=0.071 Score=45.65 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010649 123 TPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~--~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 200 (505)
.+-|..++..++... -.++.+.-|++||...+..++....+ .|..|.+|+|+..-+....+....-+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~~l~~---- 104 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDERLSG---- 104 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTTTCSS----
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhcCcCc----
Confidence 467899998887544 47788999999998855444443333 27789999999765443322211100
Q ss_pred ceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcchhhcCCCHHHHHHHHHhc-CCCCc
Q 010649 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQ 279 (505)
Q Consensus 201 i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~~-~~~~~ 279 (505)
+++ +. ..+......+..=+++|||||..|. ...+..++... ..+.|
T Consensus 105 -----------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 -----------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -----------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -----------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 000 11 1122223333455689999999987 44455555443 35678
Q ss_pred eEEecCC
Q 010649 280 TLYWSAT 286 (505)
Q Consensus 280 ~v~~SAT 286 (505)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8877544
No 160
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.31 Score=48.28 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+|+.+|+|+|||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3669999999999998643
No 161
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.31 E-value=0.19 Score=48.74 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998654
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.26 E-value=0.11 Score=51.98 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+++.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998644
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.31 Score=47.97 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+|+.+|+|+|||+.+-
T Consensus 217 rGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SEEEEESSTTTTHHHHHH
T ss_pred CCCceECCCCchHHHHHH
Confidence 679999999999998643
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.15 E-value=0.3 Score=46.85 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=26.4
Q ss_pred CCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
...+++|+||+|.+.... ...+.++++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999886432 455666676666566655544
No 165
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.80 E-value=0.35 Score=54.43 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=66.0
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccccCCCCCC
Q 010649 339 EDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDV 413 (505)
Q Consensus 339 ~~~~~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gidi~~~ 413 (505)
.....+.+++|.|+++.-|...++.+++ .++.+..+++..+..++..+++.+.+|..+|+|+| ..+...+.+.++
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 3344567999999999988888777764 35788999999999999999999999999999999 666667888888
Q ss_pred CEEE
Q 010649 414 KYVI 417 (505)
Q Consensus 414 ~~Vi 417 (505)
.+||
T Consensus 727 ~lvI 730 (1151)
T 2eyq_A 727 GLLI 730 (1151)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 8877
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.17 Score=47.91 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=25.5
Q ss_pred CccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEecCC
Q 010649 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~SAT 286 (505)
+..+|||||+|.+.... ...+.+++...+....+|+.|..
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeCC
Confidence 46799999999876432 33455556655555666665533
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.64 E-value=0.25 Score=48.65 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=14.2
Q ss_pred CcEEE--EccCCCchHHHHH
Q 010649 137 RDLIG--IAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li--~a~TGsGKT~~~~ 154 (505)
..+++ .+|+|+|||..+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35777 8999999998643
No 168
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.54 E-value=0.39 Score=47.09 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+++.+|+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 169
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.25 E-value=0.28 Score=49.12 Aligned_cols=38 Identities=26% Similarity=0.037 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
|.-+++.|++|+|||..++-.+....... +..|++++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 34589999999999976554333333221 344777764
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.21 E-value=0.62 Score=46.70 Aligned_cols=38 Identities=21% Similarity=0.053 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
|.-+++.|++|+|||..++-.+....... +..|+|+..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 45589999999999976554333332221 334777764
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.13 E-value=0.41 Score=48.88 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=25.8
Q ss_pred CCccEEEEcCcchhhcCC--CHHHHHHHHHhcCCCCceEEecCCC
Q 010649 245 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 245 ~~~~~lVlDEah~~~~~~--~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
....+|||||+|.+.... ....+..++.. ....+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999986532 23455555544 344567766663
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.01 E-value=0.19 Score=47.66 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
...+++.+|+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999998643
No 173
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.89 E-value=0.68 Score=43.42 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
++.+++.+++|+|||+.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999986443
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.69 E-value=0.21 Score=58.51 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHHhc------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 130 WPMALK------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 130 i~~~l~------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
+..++. ++.+++.+|+|+|||..++..+...... +.+++|+....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEccc
Confidence 555555 6789999999999998765544433222 56688887653
No 175
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.67 E-value=1.5 Score=37.92 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
++++||.|+++.-+..+.+.+...+ +.+..++|+.+...... .+. ....|+|+| +.+.. .+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 3469999999999999999988763 77888999877654432 232 357899999 44443 5567778
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887643
No 176
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.65 E-value=1.4 Score=33.41 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=42.7
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC
Q 010649 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK 394 (505)
Q Consensus 347 vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~ 394 (505)
.+||.+..+-...+.+.++..|..+..++++.+...|.+-++.|...-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 568888888889999999999999999999999999999999998643
No 177
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.62 E-value=0.69 Score=46.61 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcccccccCCCC
Q 010649 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (505)
Q Consensus 332 ~~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gidi~ 411 (505)
..|...++. .+.+|||.|.+...++.|.+.|.+.++.+...... . .+. .-.|.|+...+..|+-+|
T Consensus 372 ~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 372 DALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp HHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccC
Confidence 444444432 24689999999999999999999888776554321 0 122 235777778889999999
Q ss_pred CCCEEEEcC
Q 010649 412 DVKYVINYD 420 (505)
Q Consensus 412 ~~~~Vi~~~ 420 (505)
+..++|...
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 888877654
No 178
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.56 E-value=0.5 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
...+++.+|+|+|||+.+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 3569999999999998644
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.51 E-value=0.2 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.5
Q ss_pred hcCCcEEEEccCCCchHHHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~ 155 (505)
..|.-+.+.+|+|+|||+.+..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 4567799999999999976443
No 180
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.34 E-value=1.3 Score=41.35 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCccEEEEcCcchhh-cCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHH
Q 010649 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (505)
Q Consensus 245 ~~~~~lVlDEah~~~-~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~ 297 (505)
.++++||+||.-.+. +......+..+...+.++.-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 467899999994432 21123444455555555554555666544443333433
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.30 E-value=5.8 Score=37.55 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=30.9
Q ss_pred ChHHHHHHHHccCCccCCccEEEEcCcchhhc---CCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 229 T~~~l~~~l~~~~~~l~~~~~lVlDEah~~~~---~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
+...+.+.+..... .--+|||||+|.+.. ..+...+..+.... +...+| ++++.
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i-~~g~~ 179 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFI-MSGSE 179 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEE-EEESS
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEE-EEcCc
Confidence 34455555543211 234899999999864 35666776666654 234444 44443
No 182
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.91 E-value=0.41 Score=43.10 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
.|.-+++.+|+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456789999999999986544
No 183
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.79 E-value=0.58 Score=52.39 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=65.4
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccc---cCCCCCC
Q 010649 341 IMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAAR---GLDVKDV 413 (505)
Q Consensus 341 ~~~~~~vlVF~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~---Gidi~~~ 413 (505)
...+.++||.++++.-|..+++.+++ .++.+..+||+.+..++...++.+.++..+|+|+|. .+.. -+++.++
T Consensus 118 ~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 118 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred HhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCc
Confidence 34566899999999999999999988 567899999999998999999999999999999994 2211 1456678
Q ss_pred CEEEEcC
Q 010649 414 KYVINYD 420 (505)
Q Consensus 414 ~~Vi~~~ 420 (505)
.+||.-.
T Consensus 198 ~~lViDE 204 (1104)
T 4ddu_A 198 DFVFVDD 204 (1104)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 8887544
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.66 E-value=0.31 Score=52.24 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCC-CcHHHHHHHHHHhcCCcEEEEccCCCchHHHH
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFE-PTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~ 153 (505)
.|-.+|++.+--+.+.+.+...=... .+|.+-..+ -+...+.+|+.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 34567888777777777765432111 111100000 0112356999999999999754
No 185
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.66 E-value=0.97 Score=41.83 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.5
Q ss_pred HhcCCcEEEEccCCCchHHHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~~ 155 (505)
+..|.-+++.+|+|+|||+.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 44667799999999999986554
No 186
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.38 E-value=0.66 Score=41.06 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=53.5
Q ss_pred CeEEEEeCCcccHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCCC
Q 010649 345 SRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 413 (505)
Q Consensus 345 ~~vlVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~~ 413 (505)
.++||.|+++.-+..+++.+++. ++.+..++|+.+..+... .+.++..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999998888877653 688999999988765543 34456779999994 22 234667778
Q ss_pred CEEEEc
Q 010649 414 KYVINY 419 (505)
Q Consensus 414 ~~Vi~~ 419 (505)
++||.-
T Consensus 160 ~~lViD 165 (220)
T 1t6n_A 160 KHFILD 165 (220)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 887753
No 187
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.29 E-value=0.68 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
.++++++|+|+|||..+-. +...+
T Consensus 192 ~~vlL~G~pG~GKT~la~~-la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG-LAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH-HHHHH
T ss_pred CceEEEcCCCCCHHHHHHH-HHHHH
Confidence 4699999999999986443 33444
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.05 E-value=0.2 Score=48.39 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
|+-+++.+++|+|||..++. ++..+... +.+++++...
T Consensus 61 G~iv~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALH-AVANAQAA-------GGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEECC
Confidence 46689999999999987554 33333321 3457777643
No 189
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.86 E-value=0.36 Score=45.50 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
++++.+|+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997644
No 190
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.78 E-value=1.1 Score=45.72 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (505)
.+++||.++++.-+....+.|+..++.+..+|+..+..++..++..+..+..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999999999999999999994
No 191
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.63 E-value=2 Score=38.94 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc------cccCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA------ARGLDVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~------~~Gidi~~ 412 (505)
..++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ....+|+|+|. .+ ...+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 447999999999988888777653 78899999998876544433 24688999993 22 14567788
Q ss_pred CCEEEEc
Q 010649 413 VKYVINY 419 (505)
Q Consensus 413 ~~~Vi~~ 419 (505)
+++||.-
T Consensus 187 ~~~lViD 193 (249)
T 3ber_A 187 LKYLVMD 193 (249)
T ss_dssp CCEEEEC
T ss_pred cCEEEEc
Confidence 8887753
No 192
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.21 E-value=0.55 Score=45.49 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
++-+++.+++|+|||..++- ++..+... +..++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal~-la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALA-IVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHH-HHHHHHHC-------CCeEEEEECC
Confidence 45688999999999976554 44443332 3457777654
No 193
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.15 E-value=3.7 Score=38.56 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++.+++|+|||+.+..
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 477889999999976443
No 194
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.08 E-value=1.4 Score=36.92 Aligned_cols=74 Identities=14% Similarity=0.265 Sum_probs=53.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH---HHHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+..... ..+. ....|+|+| +.+. ..+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAA-RGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-TTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCchhcC
Confidence 346999999999999999988876 37788899987755443 2333 347899999 3333 25567778
Q ss_pred cEEEEcCc
Q 010649 248 TYLVLDEA 255 (505)
Q Consensus 248 ~~lVlDEa 255 (505)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.00 E-value=0.32 Score=40.04 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+....++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999974
No 196
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.87 E-value=1.1 Score=46.39 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEcc
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF--KAGKSPIMTATD 402 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f--~~g~~~vLVaT~ 402 (505)
..+.+||.++++.-+....+.|+..++.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999999998888 578899999995
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.80 E-value=0.28 Score=47.37 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=25.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
.++-+++.+++|+|||..++-.+ ..+... +.+++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la-~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVI-AAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH-HHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHC-------CCeEEEEeC
Confidence 34668999999999998765533 333331 345777775
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.74 E-value=0.35 Score=46.29 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=25.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
.|.-+++.|++|+|||..++- ++.++..+ +..|+|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~-ia~~~a~~-------g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMN-MVLSALND-------DRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEeC
Confidence 345589999999999976554 33333321 556888865
No 199
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.50 E-value=1.8 Score=36.80 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=52.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+...... .+. ....|+|+|. .+. ..+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA-RGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC-TTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh-cCCCcccC
Confidence 567999999999999988888775 477888999887654432 233 3578999992 222 34567788
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.34 E-value=0.35 Score=46.63 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=25.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (505)
|.-+++.+|+|+|||..++. ++..+... +.+++++....
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~~~-------gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQKM-------GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEeccc
Confidence 45688999999999976443 44443331 34577876643
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.27 E-value=0.5 Score=48.59 Aligned_cols=20 Identities=35% Similarity=0.222 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.+..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36679999999999998643
No 202
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.94 E-value=0.8 Score=43.57 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 010649 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (505)
Q Consensus 129 ~i~~~l~-----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L-a~Q~~~~~~~~ 195 (505)
.++.++. |.-+++.+++|+|||..++-.+. .+.... ...+.+..++++.-...+ ..++.+.+.++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~-~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV-NVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH-HTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH-HHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4555553 45689999999999976554332 222110 001113468887654321 34444445554
No 203
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.68 E-value=2.5 Score=45.28 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
..++++.+|+|+|||..+-.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHH
Confidence 45799999999999986443
No 204
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.22 E-value=1.9 Score=36.22 Aligned_cols=74 Identities=16% Similarity=0.330 Sum_probs=52.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+...... .+. ....|+|+| +.+. ...++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGT-TTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhh-cCCCcccC
Confidence 456999999999999999888875 367888999877554432 233 357899999 3332 24567778
Q ss_pred cEEEEcCc
Q 010649 248 TYLVLDEA 255 (505)
Q Consensus 248 ~~lVlDEa 255 (505)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 205
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.15 E-value=1.6 Score=37.48 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH---HHHHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+.... ...+. ....|+|+| +.+.. .+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccC
Confidence 556999999999999999888875 4778888888765433 33333 357899999 22222 4456677
Q ss_pred cEEEEc
Q 010649 248 TYLVLD 253 (505)
Q Consensus 248 ~~lVlD 253 (505)
++||.=
T Consensus 116 ~~VI~~ 121 (185)
T 2jgn_A 116 KHVINF 121 (185)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 777763
No 206
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.97 E-value=0.42 Score=43.97 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.5
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+..|.-+++++|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566789999999999975
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.80 E-value=0.98 Score=53.14 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 189 (505)
.++++++.+++|+|||..++..+.+.+.. +.+++|+.-. ++.+++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT-SCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEcc-ccHHHHH
Confidence 56789999999999998766544444333 5568887654 4444444
No 208
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.75 E-value=0.85 Score=48.90 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHH
Q 010649 137 RDLIGIAETGSGKTLAY 153 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~ 153 (505)
+.+|+.+|+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.73 E-value=0.89 Score=42.85 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=49.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 217 (505)
-+++.+|+|+|||..++-.+ ...... +.+.+++++..-..+.. ..+++++-...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~-~~~~~~-----g~g~~vlyId~E~s~~~---~ra~~lGvd~d----------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMV-SSYMRQ-----YPDAVCLFYDSEFGITP---AYLRSMGVDPE----------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHH-HHHHHH-----CTTCEEEEEESSCCCCH---HHHHHTTCCGG-----------------
T ss_pred eEEEECCCCCCHHHHHHHHH-HHHHhc-----CCCceEEEEeccchhhH---HHHHHhCCCHH-----------------
Confidence 47889999999998755433 333321 12456888877554432 23555542211
Q ss_pred HHhcCCcEEEeCh---HHH-HHHHHcc-CCccCCccEEEEcCcchhh
Q 010649 218 DLQKGVEIVIATP---GRL-IDMLESH-NTNLRRVTYLVLDEADRML 259 (505)
Q Consensus 218 ~~~~~~~Iiv~T~---~~l-~~~l~~~-~~~l~~~~~lVlDEah~~~ 259 (505)
++++..| +.+ +..+..- ...-..+++||+|-+..+.
T Consensus 84 ------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2333333 233 2222211 1222468899999999875
No 210
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.73 E-value=0.8 Score=44.19 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.+..+++.+|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345689999999999975
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.51 E-value=5.2 Score=39.38 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++.++.|+|||+.+..
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467779999999986443
No 212
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.13 E-value=0.88 Score=43.67 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=34.3
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 010649 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (505)
Q Consensus 129 ~i~~~l~-----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L-a~Q~~~~~~~~ 195 (505)
.++.++. |.-+++.+++|+|||..++-.+...... ....+.+..++|+.....+ ..++.+.+.++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~--~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP--GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC--BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc--cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3556664 3458899999999997654433221111 0011124568888654321 23344444444
No 213
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.97 E-value=2.3 Score=37.43 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=52.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH---Hh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+.+.+.+.+ +.+..++|+.+....... +. ...+|+|+| +.+.. .+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG----HPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccC
Confidence 3469999999999999999888763 778889999876554332 33 347899999 33333 5567788
Q ss_pred cEEEE
Q 010649 248 TYLVL 252 (505)
Q Consensus 248 ~~lVl 252 (505)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88775
No 214
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.68 E-value=4.5 Score=36.19 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccCCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKDV 413 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~-~Gidi~~~ 413 (505)
..++||.|+++.-+..+++.+++ .++.+..++|+.+..+....+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888776654 47889999999987766555442 578999994 222 34577788
Q ss_pred CEEEEcC
Q 010649 414 KYVINYD 420 (505)
Q Consensus 414 ~~Vi~~~ 420 (505)
.+||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8887533
No 215
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.60 E-value=4.3 Score=34.25 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=53.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++.-+..+.+.+... ++.+..++|+.+...... .+. ....|+|+|. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 446999999999999999988876 377888999877654432 233 3578999993 22 224567778
Q ss_pred cEEEEcCcc
Q 010649 248 TYLVLDEAD 256 (505)
Q Consensus 248 ~~lVlDEah 256 (505)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888865443
No 216
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.39 E-value=1.5 Score=39.18 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~ 412 (505)
..++||.|+++.-+..+++.+++. ++.+..++|+.+..++...+ ...+|+|+|. .+ ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 358999999999999888887653 67889999998876654443 2578999994 22 23456666
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777764
No 217
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.20 E-value=2.5 Score=40.80 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=53.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~ 412 (505)
..++||.|+++.-+..+++.+++. ++.+..++|+.+..+.... +..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 448999999999999888877653 7889999999887665443 4456788999993 22 23456777
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887774
No 218
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.05 E-value=5 Score=39.05 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=53.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+++.+.+. ++.+..++|+.+...... .+. ...+|+||| +.+.. .+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcccC
Confidence 667999999999999999988875 367888999887554432 222 357899999 44444 5667788
Q ss_pred cEEEE
Q 010649 248 TYLVL 252 (505)
Q Consensus 248 ~~lVl 252 (505)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88775
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.05 E-value=1.8 Score=41.10 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=36.7
Q ss_pred CccEEEEcCcchhh-cCCCHHHHHHHHHhcCCCCceEEecCCChHHHHHHHHHHc
Q 010649 246 RVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 246 ~~~~lVlDEah~~~-~~~~~~~~~~il~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
..+++++|.+-+.. +......+..+...+.++..++.+.++...+....++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 45678899887643 2334566666666777888888888887766666666553
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.77 E-value=3.3 Score=41.86 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=22.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
.+++++++|+|||+.+.- +...+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~k-LA~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK-LAYYYQRK-------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEec
Confidence 477889999999986443 33333331 445666665
No 221
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.73 E-value=0.97 Score=44.95 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~ 186 (505)
..++++.|+||+|||.. +..++..+... +..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 47899999999999986 44455555542 567899999888854
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.33 E-value=0.87 Score=45.13 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+|+.+|+|+|||+.+-
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999998644
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.21 E-value=3.2 Score=36.74 Aligned_cols=73 Identities=14% Similarity=0.265 Sum_probs=48.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 413 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~~ 413 (505)
...++||.++++.-+..+++.+++ .++.+..++|+.+..++...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 345799999999999999888876 467888899887655443332 2 3578999994 22 235567778
Q ss_pred CEEEEc
Q 010649 414 KYVINY 419 (505)
Q Consensus 414 ~~Vi~~ 419 (505)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 877743
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.12 E-value=3.8 Score=43.88 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+|||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998754
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.10 E-value=1.1 Score=52.10 Aligned_cols=119 Identities=15% Similarity=0.245 Sum_probs=67.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 215 (505)
|+-+.+.+|.|||||+.++- +++..... +..++++.+-.+|.... +++++-...
T Consensus 1431 g~~iei~g~~~sGkttl~~~-~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 35689999999999987554 44444432 56688888866665443 555543321
Q ss_pred HHHHhcCCcEEEeChHH---HHHHHHccCCccCCccEEEEcCcchhhcCC-----------------CHHHHHHHHHhcC
Q 010649 216 VRDLQKGVEIVIATPGR---LIDMLESHNTNLRRVTYLVLDEADRMLDMG-----------------FEPQIKKILSQIR 275 (505)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~---l~~~l~~~~~~l~~~~~lVlDEah~~~~~~-----------------~~~~~~~il~~~~ 275 (505)
+++++-|+. .+..++. ...-..+++||+|.+-.+.... +...++++...+.
T Consensus 1485 --------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~ 1555 (1706)
T 3cmw_A 1485 --------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1555 (1706)
T ss_dssp --------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred --------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 356666633 2222221 1112357899999988665321 1223455555554
Q ss_pred CCCceEEecCCChH
Q 010649 276 PDRQTLYWSATWPK 289 (505)
Q Consensus 276 ~~~~~v~~SAT~~~ 289 (505)
...-+++|...+..
T Consensus 1556 ~~~~~~i~~~~~~~ 1569 (1706)
T 3cmw_A 1556 QSNTLLIFINQIRM 1569 (1706)
T ss_dssp HHTCEEEEEECBC-
T ss_pred hCCcEEEEeecccc
Confidence 44445556555543
No 226
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=83.72 E-value=2.5 Score=47.73 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=49.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 218 (505)
-+|.|..|||||.+.+--+...+... ..+..+|+|+|.. +.-+..+.+.+....
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q-~TFt~~~rl~~~l~~-------------------- 57 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ-MTFLMEYELAKTPDM-------------------- 57 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG-GHHHHHHHHTCCSSC--------------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc-ccHHHHHHHHHhhhh--------------------
Confidence 37889999999988555444333332 1246699999974 322233333222110
Q ss_pred HhcCCcEEEeChHHHHHHHHccCCccCCccEEEEcCcch
Q 010649 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (505)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lVlDEah~ 257 (505)
.....+-|.|..+|...+.+... ....-|+|+.+.
T Consensus 58 -~~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 58 -GGMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp -SEESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred -cceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 00136889999988654433211 123456787764
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.70 E-value=1.2 Score=42.17 Aligned_cols=29 Identities=21% Similarity=-0.025 Sum_probs=20.3
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHH
Q 010649 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPA 157 (505)
Q Consensus 129 ~i~~~l~-----~~~~li~a~TGsGKT~~~~~~~ 157 (505)
.++.++. |.-+++.+++|+|||..++-.+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555553 3458999999999997655433
No 228
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.54 E-value=4 Score=36.28 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=49.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----cc--cCCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR--GLDVK 411 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~~--Gidi~ 411 (505)
.+.++||.|+++.-+..+++.+++. ++.+..++|+.+.......+ ...+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3458999999999998888887753 47888999987655443332 3678999993 22 12 36667
Q ss_pred CCCEEEE
Q 010649 412 DVKYVIN 418 (505)
Q Consensus 412 ~~~~Vi~ 418 (505)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777774
No 229
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.85 E-value=3.6 Score=36.75 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=44.7
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccCCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKDV 413 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~-~Gidi~~~ 413 (505)
..++||.++++.-+..+++.+++. +..+..++|+.+... ..+.+..+..+|+|+|. .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999888888653 567778888765432 33445566789999993 222 23567778
Q ss_pred CEEEE
Q 010649 414 KYVIN 418 (505)
Q Consensus 414 ~~Vi~ 418 (505)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87775
No 230
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.31 E-value=3.6 Score=44.41 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~ 153 (505)
.++.+++.+|+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999753
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.19 E-value=7.5 Score=33.50 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCCCCE
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVKY 415 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~~~~ 415 (505)
..++||.|+++.-+..+++.+++. .+.+..++|+.+.......+. ...+|+|+|. .+ ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999999888765 467888998877554443332 2578999994 21 23466777888
Q ss_pred EEEc
Q 010649 416 VINY 419 (505)
Q Consensus 416 Vi~~ 419 (505)
||.-
T Consensus 148 iViD 151 (207)
T 2gxq_A 148 AVLD 151 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 232
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.11 E-value=2.4 Score=41.75 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=18.4
Q ss_pred HHHHHHHHhc--CCcEEEEccCCCchHHH
Q 010649 126 QAQGWPMALK--GRDLIGIAETGSGKTLA 152 (505)
Q Consensus 126 Q~~~i~~~l~--~~~~li~a~TGsGKT~~ 152 (505)
+..++..++. +.-+++.+|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4444444443 34578999999999975
No 233
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.91 E-value=3.8 Score=35.50 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=50.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----c-ccCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~-~Gidi~~ 412 (505)
..++||.|+++.-+..+++.+++. +..+..++|+.+..+.... + ....+|+|+|. .+ . ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999998888877542 6778899998876544322 2 34678999994 22 2 2346677
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 787774
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=81.69 E-value=5.8 Score=36.97 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++.+++|+|||..+..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999976443
No 235
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.93 E-value=3.6 Score=38.46 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH---Hh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+...+... +. ...+|+||| +.+.. .+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccce
Confidence 445999999999998888887664 4788999999876655433 22 357899999 33333 5567788
Q ss_pred cEEEEcCc
Q 010649 248 TYLVLDEA 255 (505)
Q Consensus 248 ~~lVlDEa 255 (505)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88875443
No 236
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=79.27 E-value=1.9 Score=33.33 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
+.+.+..+.++.+++|+|.+-..+...+..|+..|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3444445556679999999988899999999999999999988753
No 237
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.09 E-value=15 Score=37.37 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=55.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+++.+.+... .++.+..++|+.+...... .+. ...+|+||| +.+.. .+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCcccC
Confidence 56799999999999999999987643 2477888999887654432 222 457899999 33333 5667788
Q ss_pred cEEEEcCc
Q 010649 248 TYLVLDEA 255 (505)
Q Consensus 248 ~~lVlDEa 255 (505)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88876543
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.94 E-value=2.2 Score=37.52 Aligned_cols=31 Identities=26% Similarity=0.163 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010649 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~ 152 (505)
-+.-|..++..+..|.-+.+.+|.|+|||+.
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3445777888888888899999999999974
No 239
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.60 E-value=5.7 Score=39.26 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC-CC---CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccc-----cCCCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRMD-GW---PALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----GLDVKD 412 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~-----Gidi~~ 412 (505)
...++||.|+++.-+...++.+++. +. .+..+||+....++..... ..+|+|+| +.+.. -++..+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4679999999999988888888764 44 8899999998877655543 46799999 33322 456677
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 787774
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.30 E-value=3.7 Score=39.46 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
...++++.+|+|+|||..+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999986543
No 241
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.93 E-value=13 Score=33.74 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=51.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--ccCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA--RGLDVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~--~Gidi~~ 412 (505)
+.++||.++++.-+..+++.+++ .+..+..++|+.........+ .. ..+|+|+|. .+. ..+++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN-GINIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-CCSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-CCCEEEEcHHHHHHHHHccCCccccc
Confidence 45899999999999888888765 356778889988766544333 33 388999993 121 2467788
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 242
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.86 E-value=1.5 Score=39.43 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
|.-+++.|++|+|||..++-.+.+.+... +..+++++-. +-..++.+.+..+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 45689999999999976554343333321 3347776643 2334445555443
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.79 E-value=1.9 Score=43.68 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHH
Q 010649 112 QEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~li~a~TGsGKT~~ 152 (505)
..+.+.|. +.+.+...+.. +..+..+++++|||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444442 34555555554 44678899999999999974
No 244
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=77.71 E-value=2.9 Score=33.35 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCC-CeEEEEe-CCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 332 NKLVKLLEDIMDG-SRILIFM-DTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 332 ~~l~~~l~~~~~~-~~vlVF~-~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
..+...+....++ .+++|+| .+-..+...+..|+..|+++..+.|++.
T Consensus 76 ~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 76 KDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3444445555566 7999999 4777788999999999999999999864
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.61 E-value=2.3 Score=41.45 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (505)
.+.++++.++||+|||...-. ++..+... +.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcCH
Confidence 457899999999999976433 33333331 5568888886543
No 246
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.50 E-value=5 Score=44.69 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCC----CeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccccCC-CCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRM----DGW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGLD-VKD 412 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~----~~~----~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~Gid-i~~ 412 (505)
.+.++||.++++.-|..+++.++. .++ .+..+||+.+..++....+.+++ .+|+|+|. .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999888887764 356 78999999999888888887777 89999994 3322222 557
Q ss_pred CCEEEEc
Q 010649 413 VKYVINY 419 (505)
Q Consensus 413 ~~~Vi~~ 419 (505)
+++||.-
T Consensus 176 l~~lViD 182 (1054)
T 1gku_B 176 FDFIFVD 182 (1054)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7787743
No 247
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.20 E-value=6.2 Score=39.57 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=28.6
Q ss_pred CccEEEEcCcchhhcC-CCHHHHHHHH---HhcC---CCCceEEecCCChHHHHHHHHHHc
Q 010649 246 RVTYLVLDEADRMLDM-GFEPQIKKIL---SQIR---PDRQTLYWSATWPKEVEHLARQYL 299 (505)
Q Consensus 246 ~~~~lVlDEah~~~~~-~~~~~~~~il---~~~~---~~~~~v~~SAT~~~~~~~~~~~~~ 299 (505)
.++++|+|-+=++... .....+.+++ ..+. +..-++.++||...+....++.|.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 4678888877653211 1122333333 3222 333467788887766555665553
No 248
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.91 E-value=19 Score=36.89 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+|+.-+..+++.+.+... .++.+..++|+.+...... .+. ...+|+||| +.+.. .+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccC
Confidence 56799999999999999999987643 2477888999887654432 232 457899999 33333 5667788
Q ss_pred cEEEEcCcc
Q 010649 248 TYLVLDEAD 256 (505)
Q Consensus 248 ~~lVlDEah 256 (505)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 888865543
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.85 E-value=5 Score=36.69 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHhcCC-----cEEEEccCCCchHHHHH
Q 010649 108 DYVMQEISKAGFFEPTPIQAQG-WPMALKGR-----DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~-i~~~l~~~-----~~li~a~TGsGKT~~~~ 154 (505)
..+.+.|+.+++ .|++... +..+++++ .+++.+|+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 467788877776 4555433 44455543 38999999999998654
No 250
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.79 E-value=5.6 Score=36.88 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
..++++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999998644
No 251
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.57 E-value=2.6 Score=39.82 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=24.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
.|.-+++.|++|+|||..++-.+ .++..+ +..+++++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia-~~~a~~-------g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQA-KNMSDN-------DDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH-HHHHTT-------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEEC
Confidence 35568999999999997654433 333321 346888764
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.52 E-value=3.1 Score=42.01 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCcEEEEccCCCchHHHH
Q 010649 127 AQGWPMALKGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 127 ~~~i~~~l~~~~~li~a~TGsGKT~~~ 153 (505)
..++..+..+.++++.+|+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344455667889999999999999753
No 253
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.37 E-value=2.1 Score=39.11 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCchHHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~ 154 (505)
.....+++.+|+|+|||..+-
T Consensus 27 ~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHH
Confidence 345789999999999997543
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.33 E-value=4.3 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||..+-
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 569999999999998643
No 255
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.12 E-value=13 Score=39.09 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=57.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH---Hh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+|+..+..+.+.+.+.+ +.+..++++.+....... +. ...+|+|+|. .+. ..+++..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~-~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIG----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR-EGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS-TTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcC----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh-CCcccCCC
Confidence 5689999999999999999888864 677888887665444322 33 3578999993 333 35667789
Q ss_pred cEEEEcCcchh
Q 010649 248 TYLVLDEADRM 258 (505)
Q Consensus 248 ~~lVlDEah~~ 258 (505)
++||+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998764
No 256
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.02 E-value=9.8 Score=38.65 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=29.3
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 194 (505)
..|.-+++.+++|+|||..+.. ++..+.. .+.+++++++... ..|+...+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~-------~G~~vi~~~~ee~-~~~l~~~~~~ 330 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSR-FVENACA-------NKERAILFAYEES-RAQLLRNAYS 330 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHh-------CCCCEEEEEEeCC-HHHHHHHHHH
Confidence 3466789999999999975443 2222221 1334677765422 2344444433
No 257
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.86 E-value=2.8 Score=37.35 Aligned_cols=21 Identities=38% Similarity=0.317 Sum_probs=16.5
Q ss_pred cEEEEccCCCchHHHHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLLPAI 158 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l 158 (505)
++++.++.|+|||..++-.+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999988655333
No 258
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=75.64 E-value=3.4 Score=41.05 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
+.++||.||+++-+..+++.+.+. ++++..++|. ........+. ...+|+||| +.+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT-----~v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILAT-----DIAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEES-----SSTTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEEC-----Chhhe-eeccC-ceEE
Confidence 456999999999999999999886 4678888884 3334444444 347999999 34433 44566 7777
Q ss_pred E
Q 010649 251 V 251 (505)
Q Consensus 251 V 251 (505)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.59 E-value=4.7 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCchHHHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-----~~~~~li~a~TGsGKT~~~~ 154 (505)
|-.+|+++.-.+.+.+.+...-. .|.+ .+.+. ..+.+++.+|+|+|||+.+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34678887656666665542100 0000 01111 22569999999999998644
No 260
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.46 E-value=4.9 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+++.+|+|+|||+.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998644
No 261
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.41 E-value=13 Score=33.32 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=49.7
Q ss_pred CeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCCCC
Q 010649 345 SRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVK 414 (505)
Q Consensus 345 ~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~~~ 414 (505)
.++||.|+++.-+..+++.+++ .++.+..++|+.+..+....+ ....+|+|+|. .+ ...+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999888877764 357788889887755443322 24678999994 22 2235777788
Q ss_pred EEEE
Q 010649 415 YVIN 418 (505)
Q Consensus 415 ~Vi~ 418 (505)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 262
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=75.38 E-value=2.1 Score=41.16 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ +++.++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778887 566699999999873
No 263
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.20 E-value=2.9 Score=36.84 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 413 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~~ 413 (505)
..++||.++++.-+..+++.++. .++.+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 45899999999999888887764 36788889998765543332 22 378999994 22 235667777
Q ss_pred CEEEE
Q 010649 414 KYVIN 418 (505)
Q Consensus 414 ~~Vi~ 418 (505)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 264
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=75.15 E-value=7.9 Score=37.46 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=53.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++.-+..+++.+.+. ++.+..++|+.+...... .+. ...+|+||| +.+. ..+++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cccc-cCCCccCC
Confidence 457999999999999999998886 367788899877654432 233 347899999 3333 35677788
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 8888533
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.98 E-value=1.8 Score=37.53 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
.++.+++++++|||||+.+-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467899999999999986443
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.44 E-value=1.7 Score=41.35 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+-++|++|||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999986543
No 267
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.07 E-value=8.5 Score=36.90 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH---HHHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++.-+..+++.+.+.+ +.+..++|+.+..... ..+. ...+|+|+|. .+. ..+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEG----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA-RGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-cCCCcccC
Confidence 5679999999999999999888753 6778888887755443 2333 3478999993 333 35677889
Q ss_pred cEEEEcCcch
Q 010649 248 TYLVLDEADR 257 (505)
Q Consensus 248 ~~lVlDEah~ 257 (505)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9988765543
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.85 E-value=2 Score=36.70 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.|+-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456689999999999975
No 269
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.79 E-value=2.2 Score=40.44 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=18.7
Q ss_pred HHhcCCcEEEEccCCCchHHHHH
Q 010649 132 MALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
.+..+.++++.+|+|+|||..+-
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHHH
Confidence 34567899999999999997643
No 270
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=73.59 E-value=8.7 Score=36.37 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...... .+. ...+|+|+|. .+.. ..++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 556999999999999999988876 367888888877554432 222 3578999993 3332 4556678
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887644
No 271
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=73.50 E-value=15 Score=28.17 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCeEEEEeC------CcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 010649 335 VKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 398 (505)
.+.++......+++||.. .-..|....+.|.+.+++...+.=......++.+.+.......+.+
T Consensus 8 ~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 8 KDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred HHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 445555556679999997 4788999999999999888777655555555555444333334433
No 272
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=73.28 E-value=16 Score=38.23 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHH---Hh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+|+..+..+.+.+.+.+ +.+..++++.+....... +. ...+|+||| +.+. ..+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~-~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLR-EGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCC-TTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhh-cCccCCCC
Confidence 5689999999999999999888864 677778887665444322 33 347899998 3333 35567788
Q ss_pred cEEEEcCcchh
Q 010649 248 TYLVLDEADRM 258 (505)
Q Consensus 248 ~~lVlDEah~~ 258 (505)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99988887653
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=73.14 E-value=1.6 Score=36.88 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
+.-+++++++|||||.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998643
No 274
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=73.11 E-value=1.7 Score=37.84 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999997533
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.01 E-value=2.2 Score=36.40 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
.+.+++++++|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999987543
No 276
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=72.72 E-value=2.7 Score=39.77 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445678887 666799999999873
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.58 E-value=2.5 Score=40.81 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+..|..+++++|||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45688999999999999974
No 278
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.27 E-value=2.5 Score=40.32 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~ 152 (505)
.+..++.|.+ ++..++||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 3445677887 56679999999987
No 279
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=72.25 E-value=3.4 Score=36.20 Aligned_cols=21 Identities=29% Similarity=0.060 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
.|.-+++.+++|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345689999999999976544
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.17 E-value=1.7 Score=36.38 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
-+++++++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999998644
No 281
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=72.04 E-value=2.7 Score=40.26 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 128 ~~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
..+..++.|.+ ++..++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36677788887 566699999999874
No 282
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=71.97 E-value=2.8 Score=41.01 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010649 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 130 i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
+..++.|.+ ++..++||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345667877 566799999999873
No 283
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.92 E-value=2.2 Score=37.53 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=47.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC--------CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----ccc-cCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-V----AAR-GLD 409 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~----~~~-Gid 409 (505)
..++||.|+++.-+..+++.+++. ++.+..++|+.+..+... .+ ....+|+|+|. . +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888776542 577888888875433211 11 23678999993 2 222 345
Q ss_pred CCCCCEEEE
Q 010649 410 VKDVKYVIN 418 (505)
Q Consensus 410 i~~~~~Vi~ 418 (505)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666777764
No 284
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=71.78 E-value=1.1 Score=41.35 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCcEEEEccCCCchHHH
Q 010649 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA--LKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~~--l~~~~~li~a~TGsGKT~~ 152 (505)
|-.+|++.+-.+.+.+.+...- ..|+. .+++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4467888876666666664321 12221 1222221 1124599999999999975
No 285
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=71.70 E-value=3.1 Score=33.00 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCeEEEEeCCccc--HHHHHHHHHhCCCCeEEEcCCC
Q 010649 334 LVKLLEDIMDGSRILIFMDTKKG--CDQITRQLRMDGWPALSIHGDK 378 (505)
Q Consensus 334 l~~~l~~~~~~~~vlVF~~~~~~--~~~l~~~L~~~~~~~~~lhg~~ 378 (505)
+...+..+.++.+++|+|.+-.. +...+..|+..|+.+..+.|++
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 33444455566799999999777 8899999999999988888875
No 286
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.58 E-value=3.1 Score=40.75 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667788888 566699999999874
No 287
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=71.53 E-value=4.5 Score=30.99 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCC-eEEEcCCCC
Q 010649 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 379 (505)
...+....++.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 344445556679999999988899999999999995 778888753
No 288
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.50 E-value=2.2 Score=40.08 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++.+|||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 468899999999986443
No 289
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=71.35 E-value=2.7 Score=40.25 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778887 566799999999874
No 290
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.30 E-value=9.1 Score=37.12 Aligned_cols=73 Identities=8% Similarity=0.239 Sum_probs=52.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH---HHHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+..... ..+. ....|+|+|. .+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA-RGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS-SSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-CcCCcccC
Confidence 347999999999999999888875 36788889887754433 2232 3578999993 333 35667788
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 8888643
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.28 E-value=1.4 Score=37.79 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCCchHHH
Q 010649 134 LKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~ 152 (505)
..|.-+++.+++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3456789999999999984
No 292
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.25 E-value=2.3 Score=39.93 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++++|||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 378899999999986543
No 293
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.16 E-value=3 Score=40.21 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678887 566799999999873
No 294
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.11 E-value=5.3 Score=34.96 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC----CcEEEEccCCCchHHHHH
Q 010649 109 YVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~----~~~li~a~TGsGKT~~~~ 154 (505)
.+.+.|.-+++ .+-.. ...+..++.+ +.+++.+|+|+|||..+.
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 45555554443 33333 3344444443 248899999999997643
No 295
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=71.11 E-value=16 Score=28.22 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=43.5
Q ss_pred HHHHHhhcCCCeEEEEe------CCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 335 VKLLEDIMDGSRILIFM------DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 335 ~~~l~~~~~~~~vlVF~------~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
.+.++......+++||. ++...|....+.|.+.+++...+.=..+.+.++.+.+.-.....+.++
T Consensus 6 ~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 6 NLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 34455555677999999 466789999999999998887776555665555554433333444443
No 296
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.10 E-value=3.1 Score=39.47 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 128 ~~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
..+..++.|.+ ++..++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788887 566799999999873
No 297
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.06 E-value=3.1 Score=39.98 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHH
Q 010649 128 QGWPMALKGRD--LIGIAETGSGKTLA 152 (505)
Q Consensus 128 ~~i~~~l~~~~--~li~a~TGsGKT~~ 152 (505)
..+..++.|.+ ++..++||||||.+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 34556778887 56669999999987
No 298
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=70.97 E-value=9.4 Score=27.57 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHhh--cCCCeEEEEeCCcccHHHHHHHHHhCCCC-eEEEcCCC
Q 010649 335 VKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDK 378 (505)
Q Consensus 335 ~~~l~~~--~~~~~vlVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~ 378 (505)
.+.+.+. .++.+++|+|.+-..+...+..|++.|+. +..+ |++
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3344444 45678999999988889999999999986 4455 654
No 299
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.96 E-value=3.1 Score=39.81 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678887 566799999999873
No 300
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.94 E-value=3.1 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010649 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 130 i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
+..++.|.+ ++..++||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345677887 566799999999873
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.89 E-value=2.3 Score=38.65 Aligned_cols=16 Identities=31% Similarity=0.140 Sum_probs=13.6
Q ss_pred EEEEccCCCchHHHHH
Q 010649 139 LIGIAETGSGKTLAYL 154 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~ 154 (505)
+++++|||||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6889999999998644
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.86 E-value=2.6 Score=36.88 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~ 153 (505)
.++-+++++|+|+|||..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556889999999999853
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=70.83 E-value=2.1 Score=36.34 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.++.+++.+++|||||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999998644
No 304
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=70.59 E-value=3.2 Score=39.65 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445677887 566799999999873
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.56 E-value=2.9 Score=39.22 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
....+++.+|+|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 45679999999999998643
No 306
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.47 E-value=3.2 Score=39.80 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678887 566799999999873
No 307
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.47 E-value=3.2 Score=39.93 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445677887 566799999999873
No 308
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=70.33 E-value=3.3 Score=39.96 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678887 566799999999873
No 309
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.29 E-value=1.5 Score=50.29 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=28.7
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
+++-+++|+|||=.-+|..-+..+.+.+....+++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34567899999988777766777777777666666555544
No 310
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.26 E-value=3 Score=40.07 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678887 566799999999873
No 311
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=70.25 E-value=5.8 Score=40.33 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccc----cc-C-CCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----RG-L-DVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~----~G-i-di~~ 412 (505)
..++||.|+++.-+....+.++.. ++.+..++|+.+...+...+. ...+|+|+|. .+. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888877777653 899999999986655433322 1477999993 332 22 3 5667
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 312
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.22 E-value=3.2 Score=39.82 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010649 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 130 i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
+..++.|.+ ++..++||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445677887 566799999999873
No 313
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.09 E-value=1.9 Score=39.11 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchHHHH
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~li~a~TGsGKT~~~ 153 (505)
.|-.+|+++.-.+.....++..-.. . -....+..+- -.+.+++.+|+|+|||..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456788876556555555432110 0 0112222211 1245899999999999753
No 314
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.01 E-value=2.8 Score=36.38 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.++-+.+++|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999975
No 315
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=69.99 E-value=3.2 Score=39.79 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010649 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 130 i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
+..++.|.+ ++..++||||||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 445667887 566799999999873
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=69.85 E-value=2.1 Score=37.34 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=17.4
Q ss_pred HhcCCcEEEEccCCCchHHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~ 154 (505)
+..++-+++++|+|||||..+-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 3456779999999999998543
No 317
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.82 E-value=2.3 Score=40.44 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+..|..+++.+|||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999973
No 318
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.77 E-value=9.9 Score=36.67 Aligned_cols=73 Identities=7% Similarity=0.161 Sum_probs=52.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH---HHHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
..++||.|+++.-+..+++.+.+.+ +.+..++|+.+..... ..+. ....|+|+|. .+. ..+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT-RGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS-SSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc-cCCCccCC
Confidence 4579999999999999999988864 6788888887765443 2333 3478999993 222 35567788
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8887643
No 319
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=69.76 E-value=2.7 Score=40.59 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~ 152 (505)
.+..++.|.+ ++..++||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445667887 56679999999987
No 320
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=69.69 E-value=4.7 Score=30.00 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=32.0
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 341 ~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
..+ .+++|+|.+-..+...+..|+..|+.+..+.|++.
T Consensus 51 l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 51 LPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 345 78999999988889999999999999778888764
No 321
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.56 E-value=4.4 Score=40.26 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
|.-+++.|++|+|||..++-.+ .++..+ +..|+|++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia-~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQA-KNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHH-HHHHHT-------TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHH-HHHHHc-------CCEEEEEEC
Confidence 3458999999999997655433 333331 456888765
No 322
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.45 E-value=4.1 Score=40.61 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
++++++.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999998754
No 323
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=69.45 E-value=14 Score=35.40 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----cccCCCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gidi~~ 412 (505)
...++||.|+++.-+..+++.+.+ .++.+..++|+.+..+....+. ..+|+|+|. .+ ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999998888777654 4678899999988766555444 467999993 22 22345666
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 324
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=68.97 E-value=3.4 Score=40.09 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ +++.++||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445677877 566799999999874
No 325
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.95 E-value=1 Score=38.18 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+...... .+. ....|+|+| +.+.. ..++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDV 99 (170)
Confidence 456999999999988888877765 467778888766543322 222 246799999 22222 3445566
Q ss_pred cEEEEcC
Q 010649 248 TYLVLDE 254 (505)
Q Consensus 248 ~~lVlDE 254 (505)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 6666533
No 326
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=68.80 E-value=11 Score=36.99 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=50.4
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 175 vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
+||.|+++.-|..+.+.+.+. ++.+..++|+.+..+... .+. ....|+|||. .+. ..+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~-rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS-RGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT-SSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh-CCCCcccCCEE
Confidence 999999999999999888875 467888999877654432 333 3478999993 333 35667788887
Q ss_pred EE
Q 010649 251 VL 252 (505)
Q Consensus 251 Vl 252 (505)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=68.58 E-value=2.4 Score=36.17 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+..+++.+++|||||+.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 328
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=68.32 E-value=9.2 Score=43.19 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=39.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCC----CCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNAQP----FLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 195 (505)
..+|.|.-|||||.+-..-++..+.... ....-....+|+|+=|+.-|.++.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999885555555554321 001112346999999999998888877764
No 329
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.31 E-value=7.6 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+++.+|+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=68.22 E-value=3 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCchHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~ 153 (505)
..+.-+++.+|+|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667889999999999853
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=68.15 E-value=8.1 Score=32.75 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=14.5
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+++|||||+.+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986443
No 332
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.13 E-value=4.2 Score=37.03 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+.+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998644
No 333
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.10 E-value=3.4 Score=40.94 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010649 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 130 i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
+..++.|.+ ++..++||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445678887 566799999999873
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.00 E-value=3.3 Score=35.36 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.+..+++++++|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 335
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=67.97 E-value=3.6 Score=34.49 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchHHHH
Q 010649 136 GRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~ 153 (505)
+..+++.+++|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999853
No 336
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=67.70 E-value=3.3 Score=39.91 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778887 566699999999873
No 337
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.68 E-value=3.9 Score=40.04 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=20.5
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 128 ~~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
..+..++.|.+ ++..++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667788887 566699999999873
No 338
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=67.65 E-value=3.2 Score=31.74 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=32.9
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCC
Q 010649 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (505)
Q Consensus 340 ~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~ 378 (505)
++.++.+++|+|.+-..+...+..|++.|+.+..+.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 344567999999998888999999999999988888764
No 339
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=67.64 E-value=20 Score=27.05 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=41.8
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 338 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 338 l~~~~~~~~vlVF~~------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
+.+.....+++||.. .-..|..+...|.+.+++...+.-+.++..+..+...+....++.++
T Consensus 10 ~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 10 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 333334567999984 56789999999999888887777666666666655555444444443
No 340
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=67.64 E-value=2.4 Score=35.43 Aligned_cols=17 Identities=12% Similarity=-0.218 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+++|||||+++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998644
No 341
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=67.39 E-value=9.1 Score=38.08 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.8
Q ss_pred HhcCCcEEEEccCCCchHHHHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~~~~ 155 (505)
+..|+.+++.++.|+|||..+..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHH
Confidence 45788899999999999976443
No 342
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=67.08 E-value=4 Score=39.45 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
.+..++.|.+ ++..++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666788887 566699999999873
No 343
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.05 E-value=3.1 Score=39.31 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++++|||+|||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 344
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=67.03 E-value=6.2 Score=40.75 Aligned_cols=41 Identities=32% Similarity=0.462 Sum_probs=29.3
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
+.+.+++++||.-.-+|......+...+..+..+.-+++.|
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 536 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45668999999998888777777777777765544344433
No 345
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=66.88 E-value=2.6 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
-+++.+++|||||+.+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37889999999998643
No 346
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.70 E-value=3.1 Score=38.75 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999998644
No 347
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.68 E-value=5.3 Score=37.01 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCchHHHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~ 155 (505)
..|.-+++.+++|+|||..+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 3566789999999999976443
No 348
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.49 E-value=3 Score=40.36 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCCchHHH
Q 010649 134 LKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~ 152 (505)
..+..+++++|||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999975
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.42 E-value=3.1 Score=35.81 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLA 152 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~ 152 (505)
|-+++++|.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5589999999999974
No 350
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.37 E-value=12 Score=35.88 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
..++++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998654
No 351
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=66.34 E-value=7.9 Score=38.22 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
+.++||+||++.-++.+++.+.+. ++++..++|.. ....+..+. ...+|+||| +.+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 346999999999999999999886 47788888863 323333333 457999999 45544 33443 4444
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.30 E-value=3.6 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.++-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567789999999999975
No 353
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.07 E-value=2.5 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchHHHH
Q 010649 137 RDLIGIAETGSGKTLAY 153 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~ 153 (505)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45899999999999753
No 354
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.92 E-value=3.8 Score=35.41 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~ 153 (505)
.|.-+.+.+|+|||||+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999853
No 355
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.77 E-value=3.5 Score=40.01 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.7
Q ss_pred HHHhcCCc--EEEEccCCCchHHHH
Q 010649 131 PMALKGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 131 ~~~l~~~~--~li~a~TGsGKT~~~ 153 (505)
..++.|.+ ++..++||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567877 566799999999873
No 356
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=65.64 E-value=4.4 Score=36.74 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=17.8
Q ss_pred hcCCcEEEEccCCCchHHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~ 154 (505)
+.++.+++.+++|+|||+++-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348899999999999998644
No 357
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=65.39 E-value=3.1 Score=36.04 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.+.-+++.+++|||||+.+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 358
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=65.36 E-value=3.7 Score=30.98 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=32.7
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCC
Q 010649 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (505)
Q Consensus 341 ~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~ 378 (505)
..++.+++|+|.+-..+...+..|+..|+++..+.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34567999999998889999999999999888888874
No 359
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=65.09 E-value=3.9 Score=31.08 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.6
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCC
Q 010649 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (505)
Q Consensus 341 ~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~ 378 (505)
..++.+++|+|.+-..+...+..|+..|+++..+.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998889999999999999888888874
No 360
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=64.77 E-value=7.7 Score=40.78 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
+.++||.||+++-++.+++.+.+. ++++..++|. .....+..+. ...+|+||| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 457999999999999988888775 4778888884 2323333333 347899999 44444 34555 6666
Q ss_pred E
Q 010649 251 V 251 (505)
Q Consensus 251 V 251 (505)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.53 E-value=9.1 Score=46.76 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH-HHH---HHHhcCCcEEEEccCCCchHHHHHH
Q 010649 106 FPDYVMQEISKAGFFEPTPIQA-QGW---PMALKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~-~~i---~~~l~~~~~li~a~TGsGKT~~~~~ 155 (505)
+.+.+.+.+.+.++. +.+.+. +++ ..+.....+++++|||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445566677777764 555543 333 2334467799999999999987554
No 362
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.46 E-value=4.4 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchHHH
Q 010649 137 RDLIGIAETGSGKTLA 152 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~ 152 (505)
+-+.+.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999985
No 363
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=64.14 E-value=4.7 Score=35.59 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.9
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+..|+-+.+++|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34577899999999999974
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.05 E-value=3.8 Score=38.99 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-++|++|||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478899999999986543
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.90 E-value=2.9 Score=35.22 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
+..+++.+++|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998643
No 366
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.89 E-value=9.6 Score=33.95 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=47.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----cc---cCCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR---GLDVK 411 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~~---Gidi~ 411 (505)
+.++||.++++.-+..+++.+++. ++.+..++++..... ..........+|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999988888764 566666665422111 11122345678999993 22 12 47788
Q ss_pred CCCEEEEcC
Q 010649 412 DVKYVINYD 420 (505)
Q Consensus 412 ~~~~Vi~~~ 420 (505)
++.+||.-.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888877533
No 367
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.85 E-value=4.6 Score=35.14 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.4
Q ss_pred EEEEccCCCchHHHHHH
Q 010649 139 LIGIAETGSGKTLAYLL 155 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~ 155 (505)
.++.+++|||||+.+..
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 68899999999987544
No 368
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.74 E-value=3 Score=35.24 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.|.-+.+++|+|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455688999999999975
No 369
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=63.32 E-value=46 Score=25.17 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=36.4
Q ss_pred CCCeEEEEeC------CcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHH
Q 010649 343 DGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 390 (505)
Q Consensus 343 ~~~~vlVF~~------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f 390 (505)
...+++||.. +-..|..+...|.+.++....+.=+.+...+....+..
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 3457889877 45689999999999999988887777766666555444
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.23 E-value=3.3 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+..+++.+++|||||+.+-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44688999999999986443
No 371
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.20 E-value=7 Score=36.55 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCchHHH
Q 010649 136 GRDLIGIAETGSGKTLA 152 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~ 152 (505)
+.-+.+.+|+|+|||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45578889999999975
No 372
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=62.87 E-value=6.9 Score=33.24 Aligned_cols=20 Identities=30% Similarity=0.125 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+..+++.+++|||||..+-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 44588999999999986543
No 373
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=62.47 E-value=8.4 Score=38.50 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=18.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
..++++.+|+|+|||..+-. +...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 35799999999999987543 33443
No 374
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.24 E-value=8.4 Score=32.49 Aligned_cols=25 Identities=16% Similarity=-0.060 Sum_probs=16.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
-+.+.++.|||||... ..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHh
Confidence 3678899999999753 334444443
No 375
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.90 E-value=11 Score=37.99 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHH
Q 010649 136 GRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~ 153 (505)
+.++++.++||||||.+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999763
No 376
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.79 E-value=4.2 Score=39.61 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.5
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-++|.+|||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367899999999987544
No 377
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.76 E-value=10 Score=39.58 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=48.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHhcCCcEEEeChHHHHHHHHccCCccCCccEEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV 251 (505)
+.++||.++++.-++++++.+.+. ++.+..++|+.+.... ...+.+|+||| +.+... +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 567999999999999999888875 4788899998876532 23456899999 444443 2343 77666
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=61.69 E-value=5.8 Score=33.87 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCchHHHHH
Q 010649 134 LKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~ 154 (505)
..+..+++.+++|||||+++-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678999999999998644
No 379
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=61.62 E-value=17 Score=38.95 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh-------cCCCCceEEEEECCCCchHHHHHHh---------cCCcEEEeChHHHHH
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKF-------GASSKIKSTCIYGGVPKGPQVRDLQ---------KGVEIVIATPGRLID 235 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~-------~~~~~i~~~~~~gg~~~~~~~~~~~---------~~~~Iiv~T~~~l~~ 235 (505)
...+||.+|++.-+..+++.+.+. ....++.+..++|+.+...+...+. ....|+||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 567999999999999998888752 2235688999999987665544332 235799999 4
Q ss_pred HHHccCCccCCccEEEE
Q 010649 236 MLESHNTNLRRVTYLVL 252 (505)
Q Consensus 236 ~l~~~~~~l~~~~~lVl 252 (505)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 4444 455677776664
No 380
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.50 E-value=3.7 Score=35.06 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
.-+++.+++|||||+.+-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998644
No 381
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=61.45 E-value=5.3 Score=37.15 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.9
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+|+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999998654
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.44 E-value=5.2 Score=34.84 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.1
Q ss_pred HHhcCCcEEEEccCCCchHHH
Q 010649 132 MALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~ 152 (505)
.+..|+-+.+.+|+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456778899999999999974
No 383
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=61.31 E-value=3.8 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
.-+++++++|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998644
No 384
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.30 E-value=10 Score=37.70 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=46.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
..++||.||++.-++++++.+.+. ++.+..+++.... .....+. ...+|+||| +.+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEE
Confidence 346999999999999998888775 4677778776542 2223333 347899999 44444 445555 666
Q ss_pred E
Q 010649 251 V 251 (505)
Q Consensus 251 V 251 (505)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 385
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.13 E-value=17 Score=33.73 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=52.2
Q ss_pred HHHHHHHhhcC---CCeEEEEeCCcccHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-
Q 010649 333 KLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV- 403 (505)
Q Consensus 333 ~l~~~l~~~~~---~~~vlVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~- 403 (505)
.++-++..... ..++||.++++.-|..+++.++.. ++.+..++++...... .....+|||+|.-
T Consensus 148 ~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~ 220 (300)
T 3fmo_B 148 FVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGT 220 (300)
T ss_dssp HHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHH
T ss_pred HHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHH
Confidence 34445544332 237999999999999987777653 4667777776543211 1345689999942
Q ss_pred c-----c-ccCCCCCCCEEEEcC
Q 010649 404 A-----A-RGLDVKDVKYVINYD 420 (505)
Q Consensus 404 ~-----~-~Gidi~~~~~Vi~~~ 420 (505)
+ . ..+++.++.+||.-.
T Consensus 221 l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 221 VLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp HHHHHTTTCCCCGGGCSEEEETT
T ss_pred HHHHHHhcCCCChhhceEEEEeC
Confidence 2 1 356777888888543
No 386
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=61.04 E-value=22 Score=37.97 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-c---
Q 010649 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-A--- 404 (505)
Q Consensus 333 ~l~~~l~~~~~~~~vlVF~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~-~--- 404 (505)
.++-++.....+..++|.|+|+.-|...+..+. ..++.+.++.|+++..+|.... .++|+|+|+- +
T Consensus 104 f~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fD 177 (853)
T 2fsf_A 104 ATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFD 177 (853)
T ss_dssp HHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHH
Confidence 333444333455689999999998877766654 4589999999999987655443 3789999952 2
Q ss_pred --ccc-------CCCCCCCEEEE
Q 010649 405 --ARG-------LDVKDVKYVIN 418 (505)
Q Consensus 405 --~~G-------idi~~~~~Vi~ 418 (505)
..+ ++...+.++|.
T Consensus 178 yLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 178 YLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHTTCSSGGGCCCCSCCEEEE
T ss_pred HHHhhhhccHhHhcccCCcEEEE
Confidence 222 45567777763
No 387
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.01 E-value=3.9 Score=34.95 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=13.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
-+++++|+|+|||+.+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999998533
No 388
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=60.95 E-value=5.1 Score=33.40 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+++++.++.|||||+++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999987553
No 389
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=60.68 E-value=18 Score=33.64 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHH---HHh-cCCcEEEeChHHHHHHHHccCCccCCc
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (505)
+.++||.+++++-+..+.+.+. .+..++|+.+...... .+. ...+|+|+| +.+.. ..++..+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~-Gid~~~~ 285 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DVASR-GLDIPLV 285 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HHHHT-TCCCCCB
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----Ccccc-CCCccCC
Confidence 5669999999988876665543 4566778776544432 222 347899999 44444 5667788
Q ss_pred cEEEEcCc
Q 010649 248 TYLVLDEA 255 (505)
Q Consensus 248 ~~lVlDEa 255 (505)
++||.-..
T Consensus 286 ~~Vi~~~~ 293 (337)
T 2z0m_A 286 EKVINFDA 293 (337)
T ss_dssp SEEEESSC
T ss_pred CEEEEecC
Confidence 88886443
No 390
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.61 E-value=9.9 Score=43.48 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=30.3
Q ss_pred cCCccEEEEcCcchhhcCCCHHHHHHHHHhcCCCCceEEec
Q 010649 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (505)
Q Consensus 244 l~~~~~lVlDEah~~~~~~~~~~~~~il~~~~~~~~~v~~S 284 (505)
+++-+++|+||+=.-+|...+..+.+.+..+.+++-+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999999888877777877777665555444444
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=60.53 E-value=3.7 Score=35.44 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.+..+++.++.|||||+.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34568899999999998643
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=60.53 E-value=4.3 Score=35.92 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.7
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010649 133 ALKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 133 ~l~~~~~li~a~TGsGKT~~ 152 (505)
+..|+-+++++|.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44567789999999999974
No 393
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=60.35 E-value=5.7 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=15.0
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+++|||||..+-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 688999999999986543
No 394
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=60.29 E-value=4.7 Score=34.88 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.+.-+++.+++|||||+.+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45568889999999998644
No 395
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=60.26 E-value=9.6 Score=38.58 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccc----c-C-CCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAAR----G-L-DVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~----G-i-di~~ 412 (505)
..++||+|+++.-+....+.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+.. + + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999998888777776653 899999999986554432222 1477999993 3322 2 2 4556
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 396
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=60.24 E-value=15 Score=39.38 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccc----cc-C-CCCC
Q 010649 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA----RG-L-DVKD 412 (505)
Q Consensus 344 ~~~vlVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~----~G-i-di~~ 412 (505)
..++||.|+++.-+......+++. ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999888877777654 899999999987655433322 2578999993 222 21 3 4556
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 397
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.20 E-value=7.9 Score=36.48 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.2
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++.+++|+|||+.+..
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999976443
No 398
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=60.09 E-value=35 Score=26.65 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=37.2
Q ss_pred HHHHhhcCCCeEEEEeC------CcccHHHHHHHHHhCCCC---eEEEcCCCCHHHHHHHHH
Q 010649 336 KLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLS 388 (505)
Q Consensus 336 ~~l~~~~~~~~vlVF~~------~~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~r~~~~~ 388 (505)
+.++......+++||.. .--.|..+.+.|.+.+++ ...+.-..+.+.++.+.+
T Consensus 7 ~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 7 KAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp HHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 44444445678999998 477899999999998887 555555555555555444
No 399
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.95 E-value=3.7 Score=35.08 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+++.+++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998654
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=59.56 E-value=5.4 Score=35.49 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
...+++.+++|||||..+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999986543
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=59.42 E-value=6.6 Score=32.24 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=12.9
Q ss_pred cEEEEccCCCchHHH
Q 010649 138 DLIGIAETGSGKTLA 152 (505)
Q Consensus 138 ~~li~a~TGsGKT~~ 152 (505)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999975
No 402
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=59.32 E-value=3.9 Score=37.93 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
-+++++|+|||||+.+-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998643
No 403
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.97 E-value=5.6 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+|+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368889999999987554
No 404
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=58.83 E-value=4.4 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.79 E-value=5.7 Score=37.69 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 406
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=58.74 E-value=69 Score=31.87 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=48.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHH---HHH-hcCCcEEEeChHHHHHHHHccCCccCCccE
Q 010649 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (505)
Q Consensus 174 ~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (505)
..+|++.+..-+..+.+.+.+.+ .++..++|+.+..... ..+ ....+|+|||+..+.. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 34444444666666666666643 4788888887754432 233 3446899999766533 567888999
Q ss_pred EEEcCcc
Q 010649 250 LVLDEAD 256 (505)
Q Consensus 250 lVlDEah 256 (505)
||+..+.
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988777
No 407
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.59 E-value=6.5 Score=33.21 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=13.0
Q ss_pred cEEEEccCCCchHHH
Q 010649 138 DLIGIAETGSGKTLA 152 (505)
Q Consensus 138 ~~li~a~TGsGKT~~ 152 (505)
-.++.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468899999999975
No 408
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.36 E-value=25 Score=33.79 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-ccCCCCC
Q 010649 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKD 412 (505)
Q Consensus 343 ~~~~vlVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~-~Gidi~~ 412 (505)
...++||.++++.-+..+++.++. .+..+..++++.+... ....+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 345899999999998888887765 3667777888776543 34455667889999993 222 2345666
Q ss_pred CCEEEE
Q 010649 413 VKYVIN 418 (505)
Q Consensus 413 ~~~Vi~ 418 (505)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
No 409
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=58.34 E-value=24 Score=27.53 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=39.8
Q ss_pred hhcCCCeEEEEeC------CcccHHHHHHHHHhCCCC-eEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 340 DIMDGSRILIFMD------TKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 340 ~~~~~~~vlVF~~------~~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
+.....+++||.. ..-.|..+.+.|.+.+++ ...+.=..+.+.++.+.+.......+.++
T Consensus 15 ~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vf 81 (118)
T 2wem_A 15 ALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY 81 (118)
T ss_dssp HHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHhccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEE
Confidence 3334468999998 478899999999999985 77776566666655544433233344433
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=58.22 E-value=5.5 Score=34.78 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010649 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
++.+.... .+..+.-+++.+++|||||..+-
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 44444442 24456678899999999998644
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.13 E-value=5.3 Score=34.24 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
+.-+++.+++|||||+.+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 412
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.97 E-value=32 Score=36.84 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=51.6
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----c------
Q 010649 342 MDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A------ 405 (505)
Q Consensus 342 ~~~~~vlVF~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~------ 405 (505)
..+..++|.|+|+.-|...++.+. ..++.+.++.|+++..+|.... ..+|+|+|+ -+ .
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 345689999999998887766654 4689999999999987766543 378999994 22 1
Q ss_pred -ccCCCCCCCEEE
Q 010649 406 -RGLDVKDVKYVI 417 (505)
Q Consensus 406 -~Gidi~~~~~Vi 417 (505)
..++...++++|
T Consensus 196 ~~~l~lr~~~~lV 208 (844)
T 1tf5_A 196 KEQMVQRPLHFAV 208 (844)
T ss_dssp GGGCCCCCCCEEE
T ss_pred hhhhcccCCCEEE
Confidence 235667777776
No 413
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=57.95 E-value=11 Score=41.56 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCCCCCCCcCCC--CCHHHHHHHHHcCCCCC----cHHHHHHHHHHhc---CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 93 DVPKPVKSFRDVG--FPDYVMQEISKAGFFEP----TPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 93 ~~p~~~~~f~~~~--l~~~~~~~l~~~~~~~~----~~~Q~~~i~~~l~---~~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
++--.+.+|..++ ..+..++.+......++ +.+=..|...++. .+.+|+.+++|+|||.+.-. +++++.
T Consensus 92 ~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 92 NILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp TEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 3334455666664 37788887766554433 3344555555543 34599999999999988654 566654
No 414
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=57.78 E-value=16 Score=29.45 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CCCeEEEEeC------CcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 010649 343 DGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (505)
Q Consensus 343 ~~~~vlVF~~------~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLV 399 (505)
...+++||+. ....|..+...|.+.+++...+.-..+.+.++.+.+.......++++
T Consensus 33 ~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 33 AENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred ccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 3357999987 56789999999999999888877666666666555444333444443
No 415
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=57.71 E-value=8.7 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=32.4
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCCC-eEEEcCCC
Q 010649 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDK 378 (505)
Q Consensus 340 ~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~ 378 (505)
....+.+++|+|.+-..+...+..|+..|+. +..+.|++
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4445678999999988899999999999995 77888874
No 416
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=57.62 E-value=5.3 Score=33.35 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+++|||||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998644
No 417
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.61 E-value=4.7 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 418
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=57.18 E-value=7.2 Score=31.01 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.6
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCC-eEEEcCCCC
Q 010649 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (505)
Q Consensus 341 ~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 379 (505)
..++.+++|+|.+-..+...+..|++.|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 345679999999988899999999999985 888888864
No 419
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=57.15 E-value=67 Score=30.41 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++++++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 420
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.15 E-value=4.8 Score=35.64 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+++.+++|||||+.+-
T Consensus 8 ~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568999999999998643
No 421
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.13 E-value=4.2 Score=35.13 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
..+++.+++|||||+.+-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986443
No 422
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=56.93 E-value=7.4 Score=37.34 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.4
Q ss_pred cCCc--EEEEccCCCchHHHH
Q 010649 135 KGRD--LIGIAETGSGKTLAY 153 (505)
Q Consensus 135 ~~~~--~li~a~TGsGKT~~~ 153 (505)
.|.+ ++..++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 577899999999873
No 423
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=56.87 E-value=19 Score=37.38 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCchHHHHHHh-cCCcEEEeChHHHHHHHHccCCccCCccEE
Q 010649 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (505)
Q Consensus 172 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (505)
..++||.|+++.-++.+++.+.+. ++++..+++.. .......+. ...+|+||| +.+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaT-----dv~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTT-----DISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEEC-----cHHHc-CcccC-ceEE
Confidence 346999999999999999999886 36778888742 222333333 457899999 44444 34453 6665
Q ss_pred E
Q 010649 251 V 251 (505)
Q Consensus 251 V 251 (505)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 424
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=56.86 E-value=6.3 Score=34.80 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
+-+++.+|+||||++.+-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4578889999999987554
No 425
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=56.81 E-value=5.5 Score=41.26 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHH
Q 010649 138 DLIGIAETGSGKTLA 152 (505)
Q Consensus 138 ~~li~a~TGsGKT~~ 152 (505)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 426
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.70 E-value=5.7 Score=39.42 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCcHHHHH-HH-HHHhcCCcEEEEccCCCchHHHHH
Q 010649 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQ-GW-PMALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~i-~~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
.|-.+|+++.-.+.+.+.+...-. .|.+.. .+ ......+.+++.+|+|+|||+.+-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 344678887655555555543200 000000 00 001123679999999999998644
No 427
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=56.55 E-value=16 Score=37.41 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=24.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
.+++|.+.||||||.+ +-.++..+.... .....+++++=|-
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl~~~---sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSILFKS---TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHHTTC---CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHHHhC---CCcceEEEEeCCC
Confidence 4799999999999976 444444444321 1123445555554
No 428
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=56.26 E-value=4.4 Score=35.12 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+.-+++.+++|||||+.+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 44588999999999986443
No 429
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=56.24 E-value=7.7 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
..+++.+++|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999986543
No 430
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.93 E-value=4.9 Score=35.37 Aligned_cols=20 Identities=30% Similarity=0.077 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~ 154 (505)
.|.-+.+.+|+|+|||+.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45668999999999997533
No 431
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=55.84 E-value=4.9 Score=33.93 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
+..+++.+++|||||+++-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4557889999999998643
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=55.62 E-value=6.8 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.2
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+++|||||+++-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998644
No 433
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=55.58 E-value=7.7 Score=38.33 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
..+++++++|+|||..+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3688899999999976544
No 434
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.55 E-value=7.4 Score=34.13 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+..+++.+++|||||+.+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34688999999999986543
No 435
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.53 E-value=8 Score=33.15 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+++|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36889999999998644
No 436
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=55.33 E-value=7.5 Score=34.16 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
..+++.+++|||||+.+-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 437
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=55.30 E-value=8.1 Score=36.33 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=12.4
Q ss_pred EEEEccCCCchHHH
Q 010649 139 LIGIAETGSGKTLA 152 (505)
Q Consensus 139 ~li~a~TGsGKT~~ 152 (505)
+++.++.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68899999999974
No 438
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=55.27 E-value=26 Score=36.72 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=53.7
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCch---HHHHHHhc---CCcEEEeChHHHHHHHHccCCccCCcc
Q 010649 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---PQVRDLQK---GVEIVIATPGRLIDMLESHNTNLRRVT 248 (505)
Q Consensus 175 vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~~~~---~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 248 (505)
.+|+++++.-+.++.+.+.+. ++.+..++|+.+.. .....+.. ..+|+||| +.+.. .+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e~-GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIGM-GLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGGS-SCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHHC-CcCc-Ccc
Confidence 466688888888888888874 47889999998866 34555553 47999999 44444 4567 899
Q ss_pred EEEEcCcchh
Q 010649 249 YLVLDEADRM 258 (505)
Q Consensus 249 ~lVlDEah~~ 258 (505)
+||.-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888654
No 439
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=55.12 E-value=5.7 Score=33.00 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+++.+++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999998644
No 440
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.96 E-value=5.6 Score=34.34 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.7
Q ss_pred cEEEEccCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAY 153 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~ 153 (505)
.+++.+++|||||+++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 441
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=54.96 E-value=7.9 Score=39.10 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
|.-+++.|++|+|||..++- ++.++..+ .+..|++++-
T Consensus 242 G~l~li~G~pG~GKT~lal~-~a~~~a~~------~g~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQ-QALQWGTA------MGKKVGLAML 279 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHH-HHHHHTTT------SCCCEEEEES
T ss_pred CeEEEEeecCCCCchHHHHH-HHHHHHHh------cCCcEEEEec
Confidence 44589999999999976554 33333321 1345777764
No 442
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=54.83 E-value=3.8 Score=38.94 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
..++++.+|+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999998644
No 443
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=54.38 E-value=21 Score=27.28 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=32.5
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCC
Q 010649 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (505)
Q Consensus 341 ~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~ 379 (505)
..++.+++|+|.+-..+...+..|+..|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 345678999999988889999999999987677888864
No 444
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=54.32 E-value=5.8 Score=34.35 Aligned_cols=16 Identities=31% Similarity=0.094 Sum_probs=13.2
Q ss_pred cEEEEccCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAY 153 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~ 153 (505)
.+.+.+++|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999854
No 445
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=54.16 E-value=11 Score=39.11 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHhcCCcEEEEccCCCchHHHHH
Q 010649 132 MALKGRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 132 ~~l~~~~~li~a~TGsGKT~~~~ 154 (505)
.+..+..+++.+|+|+|||+.+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 35567899999999999998643
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=53.94 E-value=14 Score=42.90 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (505)
++.+++.+++|+|||..++..+...+.. +.+++|+.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEec
Confidence 5789999999999998766544444432 4457777654
No 447
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=53.87 E-value=5.5 Score=35.34 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=11.8
Q ss_pred hcCCcEEEEccCCCchHHH
Q 010649 134 LKGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~ 152 (505)
..|+-+.+.+|+|+|||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466788999999999975
No 448
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=53.69 E-value=13 Score=39.68 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCCCCcCCCC-CHHHHHHHHHcCCCC----CcHHHHHHHHHHhc---CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 97 PVKSFRDVGF-PDYVMQEISKAGFFE----PTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 97 ~~~~f~~~~l-~~~~~~~l~~~~~~~----~~~~Q~~~i~~~l~---~~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+..|..+++ .+.+++.+......+ ++.+=..|...++. .+.+|+.++.|+|||.+.=. +++++.
T Consensus 124 avNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-im~yla 196 (783)
T 4db1_A 124 TVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR-VIQYFA 196 (783)
T ss_dssp EECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH-HHHhhh
Confidence 3455665553 566776665443332 33445555555543 34599999999999988554 555553
No 449
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=53.50 E-value=6.5 Score=34.10 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
.+.-+++.++.|||||+.+-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 345689999999999986543
No 450
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.33 E-value=7.7 Score=34.08 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
..+.+.+++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998644
No 451
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.30 E-value=12 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCchHHH
Q 010649 136 GRDLIGIAETGSGKTLA 152 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~ 152 (505)
+.-+.+.+|+|+|||+.
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 34578899999999975
No 452
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.14 E-value=8.2 Score=32.77 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.9
Q ss_pred cEEEEccCCCchHHH
Q 010649 138 DLIGIAETGSGKTLA 152 (505)
Q Consensus 138 ~~li~a~TGsGKT~~ 152 (505)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 453
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.07 E-value=6.9 Score=34.05 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCchHHH
Q 010649 136 GRDLIGIAETGSGKTLA 152 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~ 152 (505)
+.-+.+.+|+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578889999999975
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.06 E-value=6.2 Score=34.08 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.5
Q ss_pred cEEEEccCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAY 153 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~ 153 (505)
.+.+.+++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999854
No 455
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=52.90 E-value=5.7 Score=34.52 Aligned_cols=18 Identities=28% Similarity=-0.038 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchHHHH
Q 010649 136 GRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~ 153 (505)
+.-+.+.+|+|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344778899999999753
No 456
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=52.85 E-value=13 Score=29.79 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=33.6
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCC-CeEEEcCCCC
Q 010649 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 379 (505)
Q Consensus 340 ~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 379 (505)
...++.+++|+|.+-..+...+..|+..|+ .+..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 345567999999998899999999999999 4888989853
No 457
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.82 E-value=6.4 Score=33.48 Aligned_cols=17 Identities=29% Similarity=0.102 Sum_probs=14.0
Q ss_pred EEEEccCCCchHHHHHH
Q 010649 139 LIGIAETGSGKTLAYLL 155 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~ 155 (505)
+++.+++|||||+.+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 458
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=52.74 E-value=7.8 Score=32.24 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.|.-+.+.+|.|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999973
No 459
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=52.60 E-value=12 Score=39.22 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCCCCCCCCcCCCC-CHHHHHHHHHcCCCC----CcHHHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 93 DVPKPVKSFRDVGF-PDYVMQEISKAGFFE----PTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 93 ~~p~~~~~f~~~~l-~~~~~~~l~~~~~~~----~~~~Q~~~i~~~l~-~--~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
++--.+.+|..+++ .+..++.+......+ ++.+=..|+..++. + +.+|+.++.|+|||.+.=. +++++..
T Consensus 43 ~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla~ 120 (697)
T 1lkx_A 43 DVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK-IMQFLTF 120 (697)
T ss_dssp SCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH-HHHHHHH
T ss_pred CeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH-HHHHHHh
Confidence 34344556666653 567776665443322 23344556555543 3 4589999999999987544 5555544
No 460
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.59 E-value=8.2 Score=38.19 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~ 154 (505)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999998644
No 461
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.57 E-value=32 Score=42.77 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=31.1
Q ss_pred CHHHHHHHHHcCCCCCcHHHH-HHHHH---HhcCCcEEEEccCCCchHHHHHH
Q 010649 107 PDYVMQEISKAGFFEPTPIQA-QGWPM---ALKGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~Q~-~~i~~---~l~~~~~li~a~TGsGKT~~~~~ 155 (505)
.+.+.+.+.+.++ ++.|.+. +++.. +.....+++++|||+|||.++-.
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 3556666667777 4555443 33332 22345699999999999987553
No 462
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=52.46 E-value=33 Score=28.86 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 010649 48 PRKLDLD 54 (505)
Q Consensus 48 ~~~~~~~ 54 (505)
+..|..+
T Consensus 67 ~~~w~~d 73 (177)
T 2f3j_A 67 PDKWQHD 73 (177)
T ss_dssp TTCSSCS
T ss_pred ccccccc
Confidence 3335444
No 463
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.38 E-value=7 Score=33.92 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~ 155 (505)
.+.-+++.++.|||||+.+-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345689999999999987543
No 464
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=52.02 E-value=15 Score=33.45 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 196 (505)
+..+++.+.+|+|||+.++-.+...+.. +-++++++-. +-..++...++.++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~--------Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS--------DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT--------TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC--------CCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 3457787677777774333333333333 5567777654 44455666676664
No 465
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=51.98 E-value=14 Score=34.79 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=22.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
++..+..|.|||+++...+...... +.+||+|-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--------GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEEeC
Confidence 5667899999998866544433322 555776643
No 466
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.96 E-value=15 Score=41.15 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-----ccccccC-CC
Q 010649 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-----DVAARGL-DV 410 (505)
Q Consensus 337 ~l~~~~~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-----~~~~~Gi-di 410 (505)
++.....+.++||.++++.-+...++.+++..-.+..++|+.+ .++..+|+|+| +.+..+- .+
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 3333445679999999999999999999886668889999876 34568899999 3444433 25
Q ss_pred CCCCEEEE
Q 010649 411 KDVKYVIN 418 (505)
Q Consensus 411 ~~~~~Vi~ 418 (505)
.++.+||.
T Consensus 289 ~~l~lVVI 296 (1108)
T 3l9o_A 289 REVAWVIF 296 (1108)
T ss_dssp HHEEEEEE
T ss_pred ccCCEEEE
Confidence 56677663
No 467
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.91 E-value=10 Score=32.62 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=25.3
Q ss_pred cCCccEEEEcCcchh--hcCCCHHHHHHHHHhcCCCCceEEecCCC
Q 010649 244 LRRVTYLVLDEADRM--LDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (505)
Q Consensus 244 l~~~~~lVlDEah~~--~~~~~~~~~~~il~~~~~~~~~v~~SAT~ 287 (505)
..+.+++|+||+..+ .+..|...+..++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 566789999998776 334455666666553 22345435554
No 468
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=51.77 E-value=8.4 Score=33.60 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+++|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 469
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=51.76 E-value=6.8 Score=33.46 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.0
Q ss_pred EEEEccCCCchHHHHHH
Q 010649 139 LIGIAETGSGKTLAYLL 155 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~ 155 (505)
+++.++.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999987543
No 470
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=51.68 E-value=6.3 Score=39.50 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYL 154 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~ 154 (505)
+.+++.+|+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998643
No 471
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=51.56 E-value=14 Score=39.41 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=41.7
Q ss_pred CCCCCCCCCcCCC-CCHHHHHHHHHcCCCCC----cHHHHHHHHHHhc---CCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010649 93 DVPKPVKSFRDVG-FPDYVMQEISKAGFFEP----TPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 93 ~~p~~~~~f~~~~-l~~~~~~~l~~~~~~~~----~~~Q~~~i~~~l~---~~~~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
++--.+.+|..++ ..+.+++.+......++ +.+=..|+..++. .+.+|+.++.|+|||.+.=. +++++..
T Consensus 105 ~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla~ 182 (795)
T 1w7j_A 105 IVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYFAT 182 (795)
T ss_dssp TEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHHH
T ss_pred cceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHH-HHHHHHh
Confidence 3333345566555 35677776655443322 3344556655543 34589999999999987554 5555543
No 472
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.38 E-value=6.3 Score=35.28 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCchHH
Q 010649 135 KGRDLIGIAETGSGKTL 151 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~ 151 (505)
.|.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46778899999999997
No 473
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=51.30 E-value=8.7 Score=33.24 Aligned_cols=19 Identities=32% Similarity=-0.025 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010649 135 KGRDLIGIAETGSGKTLAY 153 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~ 153 (505)
.+.-+.+.+++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445788999999999753
No 474
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=51.26 E-value=5.1 Score=33.81 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=11.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
+.-+++.+++|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34688999999999986543
No 475
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.15 E-value=6.9 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
.+++.+++|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986443
No 476
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=51.04 E-value=9.5 Score=33.39 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010649 137 RDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 137 ~~~li~a~TGsGKT~~~~~ 155 (505)
..+++.+++|||||+.+-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 477
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=50.81 E-value=15 Score=38.99 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=38.7
Q ss_pred CCCCCcCCC-CCHHHHHHHHHcCCCC----CcHHHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 97 PVKSFRDVG-FPDYVMQEISKAGFFE----PTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 97 ~~~~f~~~~-l~~~~~~~l~~~~~~~----~~~~Q~~~i~~~l~-~--~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+..|..++ ..+.+++.+......+ ++.+=..|...++. + +.+|+.++.|+|||.+.=. +++++.
T Consensus 125 avNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 197 (770)
T 1w9i_A 125 AVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK-VIQYLA 197 (770)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred EecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHH-HHHHHH
Confidence 345555555 3666766665443332 23344455555543 3 4589999999999987544 445543
No 478
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=50.80 E-value=6.9 Score=35.52 Aligned_cols=18 Identities=22% Similarity=0.038 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHHH
Q 010649 138 DLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~~ 155 (505)
-+++++++|||||..+-.
T Consensus 6 lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999986543
No 479
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=50.78 E-value=8.4 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchHHH
Q 010649 135 KGRDLIGIAETGSGKTLA 152 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~ 152 (505)
.|+-+.+++|+|+|||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567789999999999974
No 480
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=50.71 E-value=19 Score=39.71 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCCCcCCC-CCHHHHHHHHHcCCCCCcH----HHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHh
Q 010649 97 PVKSFRDVG-FPDYVMQEISKAGFFEPTP----IQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVN 162 (505)
Q Consensus 97 ~~~~f~~~~-l~~~~~~~l~~~~~~~~~~----~Q~~~i~~~l~-~--~~~li~a~TGsGKT~~~~~~~l~~l~ 162 (505)
.+.+|..++ .++.++..+.......+-| +=..|+..++. + +.+|+.++.|+|||.+.=. +++++.
T Consensus 125 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-i~~yla 197 (1010)
T 1g8x_A 125 AVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK-VIQYLA 197 (1010)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHH-HHHHHH
T ss_pred EecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHH-HHHHHH
Confidence 345566555 3667777776554443333 44455555543 3 4589999999999987544 444443
No 481
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=50.61 E-value=17 Score=31.69 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=20.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010649 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (505)
Q Consensus 140 li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~P 180 (505)
+....+|.|||++++--+ ..+... +.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa-~~la~~-------G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALL-QAAKAA-------GYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHH-HHHHHT-------TCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHH-HHHHHC-------CCCEEEEcc
Confidence 344568999998866533 333331 566887654
No 482
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.48 E-value=9.6 Score=36.67 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.5
Q ss_pred cEEEEccCCCchHHHH
Q 010649 138 DLIGIAETGSGKTLAY 153 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~ 153 (505)
-.++++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999764
No 483
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.38 E-value=20 Score=38.30 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=18.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~~l 161 (505)
..++++.+|+|+|||..+-. +...+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~-la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 35799999999999987553 33443
No 484
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=50.19 E-value=3.7 Score=43.42 Aligned_cols=70 Identities=11% Similarity=0.245 Sum_probs=46.5
Q ss_pred CeEEEEeCCcccHHHH-HHHHHhCC---CCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccc-----------cC
Q 010649 345 SRILIFMDTKKGCDQI-TRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----------GL 408 (505)
Q Consensus 345 ~~vlVF~~~~~~~~~l-~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~-----------Gi 408 (505)
.++||.++++.-+... ++.|++.. +.+..++|+.+..++...+. +..+|+|+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 77776643 78999999876554333322 468899999 44432 24
Q ss_pred CCCCCCEEEE
Q 010649 409 DVKDVKYVIN 418 (505)
Q Consensus 409 di~~~~~Vi~ 418 (505)
.+.++++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 5667787774
No 485
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=50.03 E-value=12 Score=39.80 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHH
Q 010649 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (505)
Q Consensus 129 ~i~~~l~~~~--~li~a~TGsGKT~~ 152 (505)
.+..+++|.+ ++..++||||||.+
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhc
Confidence 5667788887 55569999999987
No 486
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.67 E-value=9.6 Score=32.65 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
.+.+.+++|||||.++-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999998643
No 487
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=49.45 E-value=20 Score=29.13 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=30.8
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHhCCC-CeEEEcCCCC
Q 010649 342 MDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 379 (505)
Q Consensus 342 ~~~~~vlVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~ 379 (505)
.++.+++|+|.+-..+...+..|+..|+ .+..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3456899999998888899999999999 4888989874
No 488
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=49.31 E-value=1.2e+02 Score=25.66 Aligned_cols=128 Identities=13% Similarity=-0.013 Sum_probs=49.7
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCC-----CCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEEC
Q 010649 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF-----LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208 (505)
Q Consensus 134 l~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~i~~~~~~g 208 (505)
+.|-.+-+....|-|=|+.+.+|+......... .....+.++|||-........+...+.+.+.. .+.
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~---~v~---- 90 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS---EVE---- 90 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS---EEE----
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eee----
Confidence 344566777888999998888886433221110 11123567899888877777666666665310 121
Q ss_pred CCCchHHHHHHhcCCcEEEeChHHHHHHHHcc--------CCccCCccEEEEcCcchhhcCCCHHHHHHHHHh---cCCC
Q 010649 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ---IRPD 277 (505)
Q Consensus 209 g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--------~~~l~~~~~lVlDEah~~~~~~~~~~~~~il~~---~~~~ 277 (505)
.+.+....+..+... ...-..+++||+|= .|.++.-...++.+... ..+.
T Consensus 91 -----------------~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 91 -----------------QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp -----------------EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCC
T ss_pred -----------------eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCC
Confidence 222333444444331 11123578899983 23333322333333322 2467
Q ss_pred CceEEecCCC
Q 010649 278 RQTLYWSATW 287 (505)
Q Consensus 278 ~~~v~~SAT~ 287 (505)
..+|++|+..
T Consensus 152 ~piI~ls~~~ 161 (206)
T 3mm4_A 152 TPIIAVSGHD 161 (206)
T ss_dssp CCEEEEESSC
T ss_pred CcEEEEECCC
Confidence 8899999875
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.21 E-value=12 Score=31.90 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=22.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 193 (505)
+++.+++|||||.-+.- +... +..+++++.....-.++.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~-------~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD-------APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS-------CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc-------CCCeEEEecCCCCCHHHHHHHH
Confidence 68899999999964332 2221 2237888875433333333333
No 490
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=49.21 E-value=16 Score=34.47 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=21.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil 178 (505)
+++.+..|.|||+++...+...... +.+|+++
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~--------G~rVllv 53 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV--------RSSVLLI 53 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS--------SSCEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC--------CCeEEEE
Confidence 5677999999998766544333222 5667776
No 491
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=49.01 E-value=48 Score=35.74 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=51.8
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCcEEEEccc-c-----c------
Q 010649 342 MDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-A-----A------ 405 (505)
Q Consensus 342 ~~~~~vlVF~~~~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~-~-----~------ 405 (505)
..+..++|.|+|+.-|...++.+. ..++.+.++.|+++..+|.... .++|+++|+- + .
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~ 223 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHS 223 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhcc
Confidence 345689999999998876666654 4689999999999987766554 3789999942 2 1
Q ss_pred -ccCCCCCCCEEEE
Q 010649 406 -RGLDVKDVKYVIN 418 (505)
Q Consensus 406 -~Gidi~~~~~Vi~ 418 (505)
..++...++++|.
T Consensus 224 ~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 224 LDDLVQRGHHYAIV 237 (922)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred HhhhccCCCCEEEE
Confidence 2356667777763
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=49.00 E-value=12 Score=32.58 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=12.9
Q ss_pred cEEEEccCCCchHHH
Q 010649 138 DLIGIAETGSGKTLA 152 (505)
Q Consensus 138 ~~li~a~TGsGKT~~ 152 (505)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 368889999999975
No 493
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=48.98 E-value=10 Score=36.46 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=12.7
Q ss_pred EEEEccCCCchHHH
Q 010649 139 LIGIAETGSGKTLA 152 (505)
Q Consensus 139 ~li~a~TGsGKT~~ 152 (505)
.++.++||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999985
No 494
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.95 E-value=6.4 Score=33.28 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=13.5
Q ss_pred cEEEEccCCCchHHHHH
Q 010649 138 DLIGIAETGSGKTLAYL 154 (505)
Q Consensus 138 ~~li~a~TGsGKT~~~~ 154 (505)
-+.+++++|||||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997543
No 495
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=48.83 E-value=9.9 Score=34.06 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLL 155 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~ 155 (505)
...+++.+++|||||+++-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34589999999999986543
No 496
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=48.81 E-value=62 Score=26.42 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCCeE---EEcCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010649 329 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPAL---SIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (505)
Q Consensus 329 ~k~~~l~~~l~~~~-~~~~vlVF~~~~~~~~~l~~~L~~~~~~~~---~lhg~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (505)
.......+++.+.. .+.+++|.|.+...++.|-+.|=...-... .+.++-. ....+|+++++-.
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~------------~~~~PV~L~~~~~ 90 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP------------RGGAPVEIAWPQK 90 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS------------TTCCSEEEECTTS
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC------------CCCCCEEEeCCCC
Confidence 35566667776653 466999999999999999999854322222 2223221 1356799998532
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHhhcccccCCCccEEEEEecCc--cHHHHHHHHHHHHHhCCC
Q 010649 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEEAGQK 469 (505)
Q Consensus 405 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~l~~~~~~ 469 (505)
. .-+..+++||++... -.+..+.-| ++-|+..+ ....+++-.+.+++.+-+
T Consensus 91 ~---~~~~~~vLinL~~~~--p~~~~~f~R---------vie~v~~d~~~~~~AR~r~k~yr~~G~~ 143 (150)
T 3sxu_A 91 R---SSSRRDILISLRTSF--ADFATAFTE---------VVDFVPYEDSLKQLARERYKAYRVAGFN 143 (150)
T ss_dssp C---CCSCCSEEEECCSSC--CGGGGGCSE---------EEEEECSSGGGHHHHHHHHHHHHHTTCE
T ss_pred C---CCCcCCEEEECCCCC--CccccCCCE---------EEEEeCCCHHHHHHHHHHHHHHHHCCCC
Confidence 1 123467999988642 223333322 35566644 445677777777776643
No 497
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=48.76 E-value=16 Score=34.75 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=21.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
+++.+..|.|||+++...+...... +.+||+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK--------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS--------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC--------CCeEEEEe
Confidence 5667899999998866544433322 55677765
No 498
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=48.63 E-value=30 Score=32.44 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=15.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhc
Q 010649 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (505)
Q Consensus 139 ~li~a~TGsGKT~~~~~~~l~~l~~ 163 (505)
+.+.+|+|||||+.+- .+..+..
T Consensus 95 igI~GpsGSGKSTl~~--~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSR--VLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHH--HHHHHHT
T ss_pred EEEECCCCCCHHHHHH--HHHHHhc
Confidence 6777999999997533 3444443
No 499
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.60 E-value=9.9 Score=35.83 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHH
Q 010649 136 GRDLIGIAETGSGKTLAYLLPAIV 159 (505)
Q Consensus 136 ~~~~li~a~TGsGKT~~~~~~~l~ 159 (505)
+..+++.+|+|+|||..++..+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
No 500
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.42 E-value=16 Score=35.00 Aligned_cols=37 Identities=30% Similarity=0.223 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010649 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (505)
Q Consensus 135 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~vlil~ 179 (505)
.+.-+.+++|+|+|||+..-..+-..-.. +.++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~--------~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE--------GTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT--------TCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc--------CCEEEEec
Done!