Query 010650
Match_columns 505
No_of_seqs 247 out of 1451
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 2.1E-83 4.6E-88 595.1 37.6 445 52-505 6-460 (472)
2 KOG0960 Mitochondrial processi 100.0 8.6E-66 1.9E-70 477.2 39.4 423 74-503 32-463 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.1E-52 2.3E-57 431.1 42.4 408 74-494 15-436 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 2.3E-44 5E-49 376.4 41.3 328 78-422 2-345 (696)
5 PRK15101 protease3; Provisiona 100.0 5.1E-43 1.1E-47 392.9 40.6 399 74-489 42-462 (961)
6 KOG2583 Ubiquinol cytochrome c 100.0 3.9E-37 8.5E-42 287.6 39.5 407 75-498 22-429 (429)
7 PTZ00432 falcilysin; Provision 100.0 3E-34 6.6E-39 319.0 41.4 391 75-482 91-565 (1119)
8 PRK15101 protease3; Provisiona 100.0 6E-34 1.3E-38 319.7 38.3 414 50-490 494-930 (961)
9 COG1025 Ptr Secreted/periplasm 100.0 5E-30 1.1E-34 266.2 38.2 401 73-488 21-440 (937)
10 KOG0959 N-arginine dibasic con 100.0 7.1E-29 1.5E-33 262.2 37.6 400 74-488 26-445 (974)
11 COG1026 Predicted Zn-dependent 99.9 1.1E-23 2.3E-28 220.2 30.7 393 80-490 26-459 (978)
12 COG1025 Ptr Secreted/periplasm 99.9 3.7E-21 8E-26 200.6 37.3 409 52-488 475-908 (937)
13 KOG0959 N-arginine dibasic con 99.9 1.2E-20 2.5E-25 200.3 37.7 412 49-488 479-925 (974)
14 PF00675 Peptidase_M16: Insuli 99.9 2.3E-22 5.1E-27 175.0 15.9 146 86-231 1-148 (149)
15 COG1026 Predicted Zn-dependent 99.9 2.2E-20 4.9E-25 195.5 30.7 399 66-489 518-958 (978)
16 PTZ00432 falcilysin; Provision 99.9 5E-20 1.1E-24 205.7 31.8 390 80-494 664-1108(1119)
17 PF05193 Peptidase_M16_C: Pept 99.9 3.5E-21 7.6E-26 173.5 17.0 174 237-423 1-184 (184)
18 KOG0961 Predicted Zn2+-depende 99.9 1E-18 2.2E-23 173.6 29.8 383 84-487 29-453 (1022)
19 KOG2019 Metalloendoprotease HM 99.8 2E-18 4.4E-23 171.7 27.8 394 79-490 57-497 (998)
20 KOG2019 Metalloendoprotease HM 99.8 4.2E-18 9.1E-23 169.5 26.4 383 79-488 564-984 (998)
21 KOG0961 Predicted Zn2+-depende 99.3 1.5E-10 3.2E-15 116.2 19.5 369 90-478 556-970 (1022)
22 PF08367 M16C_assoc: Peptidase 98.6 5.8E-07 1.3E-11 84.7 14.1 120 66-188 61-193 (248)
23 PF03410 Peptidase_M44: Protei 98.3 2.8E-05 6E-10 76.1 16.6 186 79-286 2-196 (590)
24 PHA03081 putative metalloprote 98.2 6.5E-05 1.4E-09 73.6 15.0 185 79-285 2-195 (595)
25 COG0612 PqqL Predicted Zn-depe 97.9 0.00012 2.6E-09 75.5 13.2 182 303-502 36-220 (438)
26 TIGR02110 PQQ_syn_pqqF coenzym 97.7 0.0027 5.8E-08 68.2 19.3 168 302-489 18-194 (696)
27 KOG0960 Mitochondrial processi 96.2 0.083 1.8E-06 51.4 12.3 172 302-491 51-225 (467)
28 KOG2067 Mitochondrial processi 95.8 0.096 2.1E-06 51.0 10.5 162 96-262 264-442 (472)
29 PF00675 Peptidase_M16: Insuli 95.6 0.66 1.4E-05 39.7 14.5 129 302-450 9-139 (149)
30 PF05193 Peptidase_M16_C: Pept 87.7 5.1 0.00011 34.8 9.8 107 85-196 68-184 (184)
31 KOG2583 Ubiquinol cytochrome c 86.9 23 0.0005 35.1 13.9 167 300-488 38-209 (429)
32 PF09851 SHOCT: Short C-termin 83.5 1.7 3.8E-05 26.0 3.0 26 399-424 5-30 (31)
33 PF08367 M16C_assoc: Peptidase 61.6 1.4E+02 0.0031 27.9 12.4 119 302-432 88-211 (248)
34 KOG1374 Gamma tubulin [Cytoske 51.6 38 0.00082 33.4 5.9 169 326-499 118-322 (448)
35 COG5023 Tubulin [Cytoskeleton] 37.9 4.2E+02 0.009 26.5 10.5 136 342-486 140-303 (443)
36 cd05023 S-100A11 S-100A11: S-1 29.7 2.6E+02 0.0056 21.4 7.0 76 390-466 3-83 (89)
37 PF01729 QRPTase_C: Quinolinat 29.6 64 0.0014 28.3 3.5 43 232-274 103-147 (169)
38 COG0012 Predicted GTPase, prob 28.2 4E+02 0.0086 26.7 8.9 47 345-395 83-129 (372)
39 cd05026 S-100Z S-100Z: S-100Z 28.1 2.8E+02 0.006 21.3 7.6 77 388-465 2-83 (93)
40 PRK06851 hypothetical protein; 27.9 56 0.0012 32.6 3.1 30 342-372 36-66 (367)
41 PF05120 GvpG: Gas vesicle pro 27.2 2.2E+02 0.0047 21.4 5.4 35 395-429 33-67 (79)
42 cd08779 Death_PIDD Death Domai 26.8 2.9E+02 0.0062 21.0 6.7 79 392-476 6-85 (86)
43 cd04922 ACT_AKi-HSDH-ThrA_2 AC 26.6 1.6E+02 0.0035 20.3 4.8 45 136-180 20-65 (66)
44 cd08804 Death_ank2 Death domai 26.5 2.9E+02 0.0062 20.9 6.3 66 400-473 16-83 (84)
45 PRK11032 hypothetical protein; 25.1 1.5E+02 0.0033 25.7 4.8 37 391-430 26-62 (160)
46 PF09186 DUF1949: Domain of un 23.6 2.3E+02 0.0051 18.9 6.0 45 135-179 9-53 (56)
47 COG3462 Predicted membrane pro 23.3 1.2E+02 0.0027 24.0 3.6 23 402-424 94-116 (117)
48 cd04916 ACT_AKiii-YclM-BS_2 AC 23.2 2.1E+02 0.0046 19.7 4.8 46 136-181 20-66 (66)
49 cd04936 ACT_AKii-LysC-BS-like_ 22.6 2.1E+02 0.0045 19.4 4.6 43 136-179 19-61 (63)
50 PF07295 DUF1451: Protein of u 22.0 2.8E+02 0.0062 23.6 5.9 45 388-435 13-57 (146)
51 cd04923 ACT_AK-LysC-DapG-like_ 21.1 2.3E+02 0.005 19.1 4.6 43 136-179 19-61 (63)
52 COG0157 NadC Nicotinate-nucleo 20.9 1.9E+02 0.004 27.6 4.9 44 231-274 210-254 (280)
53 PF04558 tRNA_synt_1c_R1: Glut 20.6 5.6E+02 0.012 22.3 7.6 16 463-478 116-131 (164)
54 PF14659 Phage_int_SAM_3: Phag 20.3 85 0.0018 21.2 2.1 18 460-477 41-58 (58)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-83 Score=595.13 Aligned_cols=445 Identities=45% Similarity=0.700 Sum_probs=418.0
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCC
Q 010650 52 PSLDTPLEGVSFPPSLPDFVEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKN 131 (505)
Q Consensus 52 ~~l~~pl~~~~~p~~~~~~~~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~ 131 (505)
.|+.+++| |+...+. ++..+++++|+||+||++++++++.++++++|++|+++|.+...|++||+|+|+|++|.+
T Consensus 6 ~~l~e~lP----p~~~~d~-~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~ 80 (472)
T KOG2067|consen 6 MPLIEVLP----PKSTADP-EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTER 80 (472)
T ss_pred CccccCCC----CcccCCc-ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccC
Confidence 45556655 2212233 556889999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHH
Q 010650 132 RSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLL 211 (505)
Q Consensus 132 ~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~ 211 (505)
++..++..+||.+||+++|+++||.+.|.+++.+++++.++++|+|.+.+|.|++|+++.++..+.-|+.+...+|+.++
T Consensus 81 ~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL 160 (472)
T KOG2067|consen 81 FSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLL 160 (472)
T ss_pred CcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCCC--CC
Q 010650 212 LEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPT--EP 288 (505)
Q Consensus 212 ~~~~~~~~~-~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~~--~~ 288 (505)
.+++|.++| +++++.+.+++.+.+++|+.+.|.+|.+.+|+|.+|++..||++||++++.+++||+.||+...++ .+
T Consensus 161 ~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~ 240 (472)
T KOG2067|consen 161 TEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDES 240 (472)
T ss_pred HHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccc
Confidence 999999999 889999999999999999999999999999999999999999999999999999999999854444 35
Q ss_pred CCccCCCceEecCC-------CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhc
Q 010650 289 KSVYIGGDYRQQAD-------SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEY 361 (505)
Q Consensus 289 ~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~ 361 (505)
+.+|+|+...++.| .+-+||.++|++++ ++++|.+++.+|+.+||||+|||||||||||+||||.++.+++
T Consensus 241 ~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry 318 (472)
T KOG2067|consen 241 KAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRY 318 (472)
T ss_pred hhhccccccccCCCCccccCccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhh
Confidence 67899997665543 36799999999997 6889999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHH
Q 010650 362 QQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDI 441 (505)
Q Consensus 362 g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~ 441 (505)
+|+|++.|++..|.++|+|+|+.+++|+.+.++++.+.+++..+.. | ++++|++|||+++++.+++++|++...++++
T Consensus 319 ~wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDv 396 (472)
T KOG2067|consen 319 HWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDV 396 (472)
T ss_pred HHHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHH
Confidence 9999999999999999999999999999999999999999999876 4 9999999999999999999999999999999
Q ss_pred HHHHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCHHHHHhHhhcC
Q 010650 442 GRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPGYESVSSKFHAK 505 (505)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~~~p~~~~~~~~~~~~ 505 (505)
+||++.+|.++.++++++.|+++|++||.+++++++..+++++..||...+|+|+.|..+++++
T Consensus 397 GRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~ 460 (472)
T KOG2067|consen 397 GRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG 460 (472)
T ss_pred hHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999998864
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-66 Score=477.24 Aligned_cols=423 Identities=32% Similarity=0.554 Sum_probs=397.1
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeec
Q 010650 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~ 153 (505)
|++++++|+||++|+.+++...++++++|+++||++|++++.|.+||+|||+|+||++++...+..+++.+|+++|++|+
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 57799999999999998887789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCCh
Q 010650 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (505)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (505)
||++.|..+++++++++++++|.|+++|..+.+.+++++|..++.|.++...+.+..+.+.+|..+| ++|++.+..|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCC---CC-CCCccCCCceEecC-CCCce
Q 010650 233 SALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPP---TE-PKSVYIGGDYRQQA-DSPET 306 (505)
Q Consensus 233 ~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~---~~-~~~~~~~~~~~~~~-~~~~~ 306 (505)
+.|++|+.+||++|.+.+|.++||+++.+| ++||++.+++++||+.++..... +. +++.|.|.+++... +.|.+
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~lP~a 271 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLA 271 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCCCchh
Confidence 999999999999999999999999999999 99999999999999997743322 22 34568999998765 48999
Q ss_pred EEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEe
Q 010650 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (505)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~ 386 (505)
+++++.++.+ +.++|+.++.|.++|+|.+..+-.||+-.| ++|-+.+-+. +++.++.+|+..|.++|+|++|+.|
T Consensus 272 ~~AiAVEG~~--w~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V~ 346 (467)
T KOG0960|consen 272 HIAIAVEGVS--WAHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFVT 346 (467)
T ss_pred heeeeEecCC--cCCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEEEe
Confidence 9999999996 499999999999999999887767777655 9999888776 6789999999999999999999999
Q ss_pred -CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCC
Q 010650 387 -GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHIT 465 (505)
Q Consensus 387 -~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT 465 (505)
++..+++++..+..++.++.. .+|+.|++|||++++..+...+++..-.+++++++++++|++.+..+....|++||
T Consensus 347 ~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~El~~rId~vt 424 (467)
T KOG0960|consen 347 DNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLAELEARIDAVT 424 (467)
T ss_pred cChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChHHHHHHHhhcc
Confidence 899999999999999999987 59999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEcCCCCCCCHHHHHhHhh
Q 010650 466 LDDITNIAQKIIS-SPLTMASYGDVINVPGYESVSSKFH 503 (505)
Q Consensus 466 ~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~~~~~~~ 503 (505)
.+||+++|.+|+- .++.++.+|+.+.+|+|..|++.|.
T Consensus 425 ~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~ 463 (467)
T KOG0960|consen 425 AKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMS 463 (467)
T ss_pred HHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccch
Confidence 9999999999998 8899999999999999999999875
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.1e-52 Score=431.08 Aligned_cols=408 Identities=27% Similarity=0.445 Sum_probs=357.5
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeee
Q 010650 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~ 152 (505)
++++.++|+||+++++.+.+ .+.+++.+++++|+++|++...|+||++|||+|+||.+++..++.+.++..|+..|++|
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 34899999999999987777 68999999999999999999999999999999999999888899999999999999999
Q ss_pred ccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCC
Q 010650 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAP 231 (505)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 231 (505)
+.+.+.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|++....+|...+.+.++..+| +|||++++.|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCC-CCCCCCCC-CccCCCce-Ee----cCCC
Q 010650 232 ESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPR-LPPPTEPK-SVYIGGDY-RQ----QADS 303 (505)
Q Consensus 232 ~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~-~~~~~~~~-~~~~~~~~-~~----~~~~ 303 (505)
.+.|+++|.++|++||++||+|+||+++||| ++++++..+++++|++|+. .+....+. +...+... .+ ..+.
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 9999999999999999997 22222222 22233322 22 2345
Q ss_pred CceEEEEEEeeCCCCCCCh-hhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEE
Q 010650 304 PETHIALAFEVPGGWLKDK-EAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (505)
Q Consensus 304 ~~~~v~~~~~~~~~~~~~~-~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i 382 (505)
.++++.++|+.+. ...+ +.+++.+++.+|||+ ++||||+.+|++.|++|+++++...+.+.+.+.+
T Consensus 255 ~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~ 321 (438)
T COG0612 255 EQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSI 321 (438)
T ss_pred hhhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceE
Confidence 6788889988886 3443 788999999999976 5599999999999999999988888888899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHH
Q 010650 383 YACTGSDFVSKAVDLVVRELILIATP--KQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSV 460 (505)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~~~~~--g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (505)
++.+.+.+...+.+.+.+++..+.+. +.+++++++++|..+...+....+++...++.++.+....+...+.+++.+.
T Consensus 322 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (438)
T COG0612 322 YAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLER 401 (438)
T ss_pred EEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 99988555555555555555444442 2499999999999999999999999999999988887655677889999999
Q ss_pred HccCCHHHHHHHHHHHhc-CCcEEEEEcCCCCCCC
Q 010650 461 LEHITLDDITNIAQKIIS-SPLTMASYGDVINVPG 494 (505)
Q Consensus 461 i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~ 494 (505)
|++||++||+++|++++. ++.+++++||....+.
T Consensus 402 i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~~~~~ 436 (438)
T COG0612 402 IEAVTLEDVNAVAKKLLAPENLTIVVLGPEKALKD 436 (438)
T ss_pred HHhcCHHHHHHHHHHhcCCCCcEEEEEcccccccc
Confidence 999999999999999999 6699999999877654
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=2.3e-44 Score=376.36 Aligned_cols=328 Identities=16% Similarity=0.152 Sum_probs=283.4
Q ss_pred EEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChH-HHHHHHHHcCCeeeeeeccc
Q 010650 78 VTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHL-RIVREVEAIGGSILASASRE 155 (505)
Q Consensus 78 ~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~-~l~~~l~~~g~~~~~~~~~~ 155 (505)
.++|+||++|++.+.+ .+.+++.++|++|+.+|+++..|++||+|||+|+||++++.. ++.+.++.+|+.+|++|+.|
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 4689999999975555 689999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCChhh
Q 010650 156 QMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESA 234 (505)
Q Consensus 156 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 234 (505)
++.|++++++++++.+|+++.+++.+|.|++++++++|+.+++|++...++|...+.+.+...+| +|||+++.+|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCC---HHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC--CCccCCCceE-ecCCCCceE
Q 010650 235 LNRLD---GTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIGGDYR-QQADSPETH 307 (505)
Q Consensus 235 l~~lt---~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 307 (505)
|++++ .++|++||+++|.|+||+++|+| +++++++++++++|+.|+.+..+... .+.+...... ...+.++.+
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~ 241 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGGSEPRLW 241 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEecCcceEE
Confidence 99876 99999999999999999999999 99999999999999999866543221 2222223222 233456666
Q ss_pred EEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcc--eeEEEEE
Q 010650 308 IALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTG--LFGIYAC 385 (505)
Q Consensus 308 v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g--~~~i~~~ 385 (505)
+.+.++... .. +...+.+++.+|+++. .++|+.+||+ .|++|++++.. .+.+.+ .|.|++.
T Consensus 242 l~~~~p~~~--~~--d~~al~lL~~iLg~g~-----------sSrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~~ 304 (696)
T TIGR02110 242 LLFALAGLP--AT--ARDNVTLLCEFLQDEA-----------PGGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEFS 304 (696)
T ss_pred EEEeecCCC--CC--ChHHHHHHHHHhCCCc-----------chHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEEE
Confidence 666665543 33 3345899999999874 4999999997 79999999865 444444 8999998
Q ss_pred e---CcchHHHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 010650 386 T---GSDFVSKAVDLVVRELILIATPK-QVTQVQLNRAKEA 422 (505)
Q Consensus 386 ~---~p~~~~~~~~~~~~~l~~~~~~g-~~t~~el~~ak~~ 422 (505)
+ .+++..++++.+.++|+++++++ .++.+|++++|+.
T Consensus 305 lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 305 ARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQR 345 (696)
T ss_pred EcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 7 35689999999999999998872 3999999999987
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=5.1e-43 Score=392.92 Aligned_cols=399 Identities=14% Similarity=0.120 Sum_probs=329.7
Q ss_pred CceEEEEcCCCcEEEEe-cCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCC-hHHHHHHHHHcCCeeeee
Q 010650 74 GKVKVTTLENGIRIASE-TSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILAS 151 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~-~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~-~~~l~~~l~~~g~~~~~~ 151 (505)
..++.++|+||++|++. +...+.+.+.+++++|+.+|+++..|+|||+|||+|+||++++ ..++.+.++.+|+.+|++
T Consensus 42 ~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~ 121 (961)
T PRK15101 42 RQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNAS 121 (961)
T ss_pred cceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccce
Confidence 46788999999999964 4456899999999999999999999999999999999999996 578999999999999999
Q ss_pred eccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCC
Q 010650 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (505)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 230 (505)
|+.+++.|++++++++++.+|+++.+++.+|.|++++++++|..+.+|++...++|...+.+.+...+| +|||+++..|
T Consensus 122 T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G 201 (961)
T PRK15101 122 TASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGG 201 (961)
T ss_pred ECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999888999999999998999 9999999999
Q ss_pred ChhhhcCC----CHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCC--CCCccC---CCc-eEe
Q 010650 231 PESALNRL----DGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PKSVYI---GGD-YRQ 299 (505)
Q Consensus 231 ~~~~l~~l----t~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~--~~~~~~---~~~-~~~ 299 (505)
+.+.|.++ +.++|++||+++|.|+||+++|+| ++++++.++++++|+.||+...+.. +.+.+. .+. ...
T Consensus 202 ~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (961)
T PRK15101 202 NLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIHY 281 (961)
T ss_pred CHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEEE
Confidence 99999997 699999999999999999999999 9999999999999999987653211 112221 111 222
Q ss_pred cCCCCceEEEEEEeeCCCCCCC-hhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeeccc--CC
Q 010650 300 QADSPETHIALAFEVPGGWLKD-KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIF--NN 376 (505)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~--~~ 376 (505)
....++..+.+.|+.|. ... .+.....++..+|+++++ +.|+..| ++.|++|+++++...+ .+
T Consensus 282 ~~~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L-~~~gla~~v~s~~~~~~~~~ 347 (961)
T PRK15101 282 VPAQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWL-QKQGLAEGISAGADPMVDRN 347 (961)
T ss_pred EECCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHH-HHcCccceeeeccccccCCC
Confidence 34467788889999885 222 123356789999997633 5677666 4789999999876543 46
Q ss_pred cceeEEEEEeCcc---hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHc-ccChHHHHHHHHHHHHHhCCcC
Q 010650 377 TGLFGIYACTGSD---FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN-LESRVIVSEDIGRQILTYGERK 452 (505)
Q Consensus 377 ~g~~~i~~~~~p~---~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 452 (505)
.|.|.|++.+.++ +..++++.+.++|+.++++| +++++|+++|+.+...+... ...+......+...+. ...+.
T Consensus 348 ~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 425 (961)
T PRK15101 348 SGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKG-IDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML-RVPVE 425 (961)
T ss_pred ceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh-hCCHH
Confidence 7899999999885 78899999999999999998 99999999999988776432 2333444455555432 22223
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHhc-CCcEEEEEcCC
Q 010650 453 SVDQFLSVLEHITLDDITNIAQKIIS-SPLTMASYGDV 489 (505)
Q Consensus 453 ~~~~~~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~ 489 (505)
........++.+++++|+++++. |. ++..++++++.
T Consensus 426 ~~l~~~~~~~~~~~~~i~~~~~~-l~~~n~~i~~~~~~ 462 (961)
T PRK15101 426 HTLDAPYIADRYDPKAIKARLAE-MTPQNARIWYISPQ 462 (961)
T ss_pred HheeCchhhhcCCHHHHHHHHhh-cCHhHEEEEEEeCC
Confidence 33445578999999999999988 56 88888888864
No 6
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=3.9e-37 Score=287.62 Aligned_cols=407 Identities=28% Similarity=0.425 Sum_probs=332.6
Q ss_pred ceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeecc
Q 010650 75 KVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (505)
Q Consensus 75 ~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~ 154 (505)
.....+|.||++|...+.++++.++.+.+++||++|+..+.|++|+++...++.|.+++...|.+..+..|+.++..++|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHH-HHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCChh
Q 010650 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEEL-RKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPES 233 (505)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k-~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (505)
|.+.+++++++++++..|.+|.+.+.+|.|.+|+++... ..+..++ ...+|+..+.+.+|..+|.+.+|++.+.+.-
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l--~~~t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADL--AYQTPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHh--hhcChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 999999999999999999999999999999999999987 5554443 4579999999999999995599999988878
Q ss_pred hhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCCCCCCCccCCCceEecCCCCceEEEEEEe
Q 010650 234 ALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIALAFE 313 (505)
Q Consensus 234 ~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 313 (505)
.+.+++.++|..|..++|...|++++.+|+|++.++...++++ .++.+......+..|.+++.+........++.+.-.
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g~~~~v~vage 258 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARGNRVHVAVAGE 258 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCCceeEEEEecC
Confidence 8999999999999999999999999999999999999999983 333333222234567888888777777788776655
Q ss_pred eCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcchHHH
Q 010650 314 VPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSK 393 (505)
Q Consensus 314 ~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~ 393 (505)
.-.. .+.++..+..++.+.|+... |=|-=.+.+.+..-...+..-+++++...|.+.|+|++++..+-.++.+
T Consensus 259 gAAa-~~~k~~~a~av~~~~Lg~~~------~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~~ 331 (429)
T KOG2583|consen 259 GAAA-GNLKVLAAQAVLLAALGNSA------PVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAGK 331 (429)
T ss_pred cccc-cchHHHHHHHHHHHHHhccc------ccccccchHHHHHhhccccCceeeeecccccCCceEEEEEEecCccHHH
Confidence 4432 35789999999999999642 1110023333333233334457788899999999999999988778889
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHHHH
Q 010650 394 AVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIA 473 (505)
Q Consensus 394 ~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a 473 (505)
++......++..+..+ ++....+.+++.++....+..+. .......+ .+..-....++..|++||..||++.+
T Consensus 332 ~v~s~v~~lks~~~~~-id~~~~~a~~~~l~~~~~ss~~a---~~~~~~~~---a~~~~~~d~~i~~id~Vt~sdV~~a~ 404 (429)
T KOG2583|consen 332 VVSSEVKKLKSALVSD-IDNAKVKAAIKALKASYLSSVEA---LELATGSQ---ANLVSEPDAFIQQIDKVTASDVQKAA 404 (429)
T ss_pred HHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhcchHH---HHHhhHHH---hcCCCChHHHHHHhccccHHHHHHHH
Confidence 9988888888887776 88777777777777665554433 22222222 22222567899999999999999999
Q ss_pred HHHhcCCcEEEEEcCCCCCCCHHHH
Q 010650 474 QKIISSPLTMASYGDVINVPGYESV 498 (505)
Q Consensus 474 ~~~l~~~~~~~v~G~~~~~p~~~~~ 498 (505)
++++..+..++.+|+...+|.+||+
T Consensus 405 kk~~s~kls~aA~Gnl~~vPY~DEL 429 (429)
T KOG2583|consen 405 KKFLSGKLSLAAYGNLSNVPYLDEL 429 (429)
T ss_pred HHhccCcceeeeeccccCCcccccC
Confidence 9999999999999999999999874
No 7
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=3e-34 Score=318.96 Aligned_cols=391 Identities=11% Similarity=0.097 Sum_probs=298.6
Q ss_pred ceEEEEcCCCcEEEEecCCC---CeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcC--Ceee
Q 010650 75 KVKVTTLENGIRIASETSVS---PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIG--GSIL 149 (505)
Q Consensus 75 ~~~~~~L~NGl~v~~~~~~~---~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g--~~~~ 149 (505)
.+...-.+||++|++...+. +.+.+.++|+.|+ .+..|++|++|||+|+||++++..++...++..| +.+|
T Consensus 91 ~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lN 166 (1119)
T PTZ00432 91 ATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLN 166 (1119)
T ss_pred EEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCcc
Confidence 45566677999999654443 4789999999996 3468999999999999999999999999998866 7799
Q ss_pred eeeccceeEEEeecccc-cHHHHHHHHHHhhhCCCCChHHH--HH---------H--------------------HHHHH
Q 010650 150 ASASREQMGYSFDALKT-YVPEMVELLVDCVRNPVFLDWEV--NE---------E--------------------LRKLK 197 (505)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~l~~~l~ll~~~~~~p~f~~~~~--~~---------~--------------------k~~~~ 197 (505)
++|+.|+++|.+.+.++ ++..+|+++.+.+.+|.|+++++ .+ + +..|.
T Consensus 167 A~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~ 246 (1119)
T PTZ00432 167 AYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVY 246 (1119)
T ss_pred ccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHH
Confidence 99999999999999885 79999999999999999988763 21 1 67799
Q ss_pred HHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhc
Q 010650 198 SELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLL 276 (505)
Q Consensus 198 ~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~ 276 (505)
+|++...++|...+.+.+...+|+|||+++..|+++.|.++|.+++++||+++|+|+|++++++| ++++++.++++++|
T Consensus 247 ~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f 326 (1119)
T PTZ00432 247 SEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYL 326 (1119)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCC--------CC-CC--c-cCCCc-eEe---cCCCCceEEEEE-EeeCCCC----------CCChhhHHHHH
Q 010650 277 SDLPRLPPPT--------EP-KS--V-YIGGD-YRQ---QADSPETHIALA-FEVPGGW----------LKDKEAIILTV 329 (505)
Q Consensus 277 ~~l~~~~~~~--------~~-~~--~-~~~~~-~~~---~~~~~~~~v~~~-~~~~~~~----------~~~~~~~~~~v 329 (505)
+.+|...... .. .+ . +.+.. ... ..+..+..+.++ |..++.. .+.++..++.|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~V 406 (1119)
T PTZ00432 327 TKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLV 406 (1119)
T ss_pred hhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHH
Confidence 8887552110 00 11 1 11111 111 123345666665 9774210 12368899999
Q ss_pred HHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEE-EeecccCCcceeEEEEE-eCc-------chHHHHHHHHHH
Q 010650 330 LQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFS-AFNSIFNNTGLFGIYAC-TGS-------DFVSKAVDLVVR 400 (505)
Q Consensus 330 l~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~-a~~~~~~~~g~~~i~~~-~~p-------~~~~~~~~~~~~ 400 (505)
|+.+|+++++ ++|++.||+ .|++|++. ++.......+.|.|++. +++ +++.++.+.+.+
T Consensus 407 Ls~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~ 474 (1119)
T PTZ00432 407 LNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLN 474 (1119)
T ss_pred HHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHH
Confidence 9999998755 999999997 69999863 34444556788888875 442 346789999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHhCCcCCH---HHHHHHHc---cCCHHHHH
Q 010650 401 ELILIATPKQVTQVQLNRAKEATKSAVLMNLES----RVIVSEDIGRQILTYGERKSV---DQFLSVLE---HITLDDIT 470 (505)
Q Consensus 401 ~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s----~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~---~vT~~di~ 470 (505)
+|+++.++| +++++++++++++...+.....+ ....+..+...+++++.+... +...+.|+ +-+..-+.
T Consensus 475 ~L~~l~~eG-i~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e 553 (1119)
T PTZ00432 475 ALTKVVTEG-FNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLE 553 (1119)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHH
Confidence 999999999 99999999999998877654321 234455666666534444332 22222222 12335688
Q ss_pred HHHHHHhcCCcE
Q 010650 471 NIAQKIISSPLT 482 (505)
Q Consensus 471 ~~a~~~l~~~~~ 482 (505)
+++++||-++..
T Consensus 554 ~Li~k~ll~N~h 565 (1119)
T PTZ00432 554 KLIEKHLLNNNH 565 (1119)
T ss_pred HHHHHHccCCCe
Confidence 999999874433
No 8
>PRK15101 protease3; Provisional
Probab=100.00 E-value=6e-34 Score=319.72 Aligned_cols=414 Identities=11% Similarity=0.065 Sum_probs=320.7
Q ss_pred CCCCCCccCCCCCCCCCCC---CCCCCCceEEEEcCCCcEEEEecCC----CCeEEEEEEEeccccCCCCCCCcHHHHHH
Q 010650 50 SLPSLDTPLEGVSFPPSLP---DFVEPGKVKVTTLENGIRIASETSV----SPAASIGLYLDFGSVYETPSSCGASNLLE 122 (505)
Q Consensus 50 ~~~~l~~pl~~~~~p~~~~---~~~~~~~~~~~~L~NGl~v~~~~~~----~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~ 122 (505)
..+.++.|-+|.++|++.. .......++.+.++||++||.++++ .|++.+.+.+.+|...+++...+++.++.
T Consensus 494 ~~~~l~lP~~n~fip~~~~~~~~~~~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~ 573 (961)
T PRK15101 494 QNIALSLPELNPYIPDDFSLIKADKAYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALND 573 (961)
T ss_pred CCccCCCCCCCCccCCCCeeccCCCCCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHH
Confidence 3456888999999998432 1111234688899999999964443 58999999999999999999999999999
Q ss_pred HhhccCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHh
Q 010650 123 KMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGE 202 (505)
Q Consensus 123 ~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~ 202 (505)
.|+ +.+..++.+..+..|.+++.. +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+.+++++
T Consensus 574 ~ll-----~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~ 647 (961)
T PRK15101 574 YLA-----GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDS 647 (961)
T ss_pred HHH-----HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 998 556667778888899999999 79999999999999999999999999999999999999999999999987
Q ss_pred hh-CChHHHHHHHHHHhhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCC
Q 010650 203 LH-NNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDL 279 (505)
Q Consensus 203 ~~-~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l 279 (505)
.. ..|...+...+ ..+ .|||+.+ .++.+.|+++|.+++++|++++|.+.+++++|+| ++.+++.++++++++.+
T Consensus 648 ~~~~~~~~~~~~~~--~~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l 724 (961)
T PRK15101 648 AEKGKAYEQAIMPA--QMLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQL 724 (961)
T ss_pred hcccCcHHHHHHHH--HHHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHh
Confidence 54 34443333322 234 8898864 5678999999999999999999999999999999 99999999999888888
Q ss_pred CCCCCCC-CCC-Ccc-CCCceEe--cCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHH
Q 010650 280 PRLPPPT-EPK-SVY-IGGDYRQ--QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLY 354 (505)
Q Consensus 280 ~~~~~~~-~~~-~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~ 354 (505)
+...... ... ... .+....+ .....+..+.+.|...+ . +.....++..||+++ |.++||
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~---~~~~~~v~~~lLg~~-----------~ssrlf 788 (961)
T PRK15101 725 GADGTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG--Y---DEYQSSAYSSLLGQI-----------IQPWFY 788 (961)
T ss_pred ccCCcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC--C---CCHHHHHHHHHHHHH-----------HhHHHH
Confidence 6532211 100 011 1112222 22334455666664443 2 236777888888875 559999
Q ss_pred HHHHhhcCCeEEEEEeecccCCcceeEEEEEe---CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcc
Q 010650 355 LRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT---GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL 431 (505)
Q Consensus 355 ~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~---~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~ 431 (505)
++||++.|++|+|+++.....+.+.+.+.+++ +|+.+.+.++.+.+++.+... + +|++||+++|+.+++.+....
T Consensus 789 ~~LRtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~-~-lt~eE~~~~k~~l~~~~~~~~ 866 (961)
T PRK15101 789 NQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLR-A-MKPEEFAQYQQALINQLLQAP 866 (961)
T ss_pred HHHHHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999987776665666666644 466777777887777544444 5 999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHhCCc-CCHHHHHHHHccCCHHHHHHHHHHH-hc-CC--cEEEEEcCCC
Q 010650 432 ESRVIVSEDIGRQILTYGER-KSVDQFLSVLEHITLDDITNIAQKI-IS-SP--LTMASYGDVI 490 (505)
Q Consensus 432 ~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vT~~di~~~a~~~-l~-~~--~~~~v~G~~~ 490 (505)
++....+..+|..+..++.. ...+++.+.|++||++||++++++| +. ++ .++.+.|...
T Consensus 867 ~sl~~~a~~~~~~i~~~~~~fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (961)
T PRK15101 867 QTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVIEPQGLAILSQISGSQN 930 (961)
T ss_pred CCHHHHHHHHHHHHhcCCCCcChHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCEEEEEeeccCc
Confidence 99999999999888644444 4578899999999999999999998 55 44 3344446544
No 9
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-30 Score=266.17 Aligned_cols=401 Identities=17% Similarity=0.175 Sum_probs=316.2
Q ss_pred CCceEEEEcCCCcEEEE-ecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCeeee
Q 010650 73 PGKVKVTTLENGIRIAS-ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH-LRIVREVEAIGGSILA 150 (505)
Q Consensus 73 ~~~~~~~~L~NGl~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~-~~l~~~l~~~g~~~~~ 150 (505)
...++..+|+||+++.+ .|...+++...+.|+.|+..+|.+..|+||++|||+|.|+++++. ..+..+|+.+||+.|+
T Consensus 21 ~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA 100 (937)
T COG1025 21 DRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNA 100 (937)
T ss_pred CcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcccc
Confidence 35789999999999995 666678999999999999999999999999999999999999765 5689999999999999
Q ss_pred eeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCC
Q 010650 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (505)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 229 (505)
+|..+.|+|.+++.++.++.+|+.++++|.+|.|+++..++++..|.+|+.....+-...++......+. +||+.+...
T Consensus 101 ~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~ 180 (937)
T COG1025 101 STAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFST 180 (937)
T ss_pred ccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999888888888888888888 999999999
Q ss_pred CChhhhcC----CCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCCC--Ccc----CCCceE
Q 010650 230 APESALNR----LDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVY----IGGDYR 298 (505)
Q Consensus 230 ~~~~~l~~----lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~----~~~~~~ 298 (505)
|..+.|.. ...++|.+||+++|.+++|+++|.| -+.+++.+++.++|+.+|.......+. |++ .+....
T Consensus 181 GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~ 260 (937)
T COG1025 181 GNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIH 260 (937)
T ss_pred CChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceEE
Confidence 99999987 5579999999999999999999999 999999999999999999766543322 332 333444
Q ss_pred ecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccC-Cc
Q 010650 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFN-NT 377 (505)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~-~~ 377 (505)
+....+...+.+.|+.++. ...-..-....+.+|+|.. ||| +.+ ....+.||+-++.++..... +.
T Consensus 261 i~p~~~~~~L~i~f~i~~~-~~~~~~~~~~~~s~Lig~e------s~g----sL~--~~Lk~~Glit~l~a~~~~~~~n~ 327 (937)
T COG1025 261 IVPAKPRPRLRIYFPIDDN-SAKFRSKPDEYLSHLIGNE------SPG----SLL--AWLKKQGLITELSAGLDPISGNY 327 (937)
T ss_pred eccCCCCceEEEEEEcCCc-ccccccCCHHHHHHHhccC------CCc----hHH--HHHHhccchhhhccccccccCCc
Confidence 5555677888899999873 2222355677888898875 344 544 45577899999999876655 77
Q ss_pred ceeEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccC-hHHHHHHHHHHHHHhCCcCC
Q 010650 378 GLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLES-RVIVSEDIGRQILTYGERKS 453 (505)
Q Consensus 378 g~~~i~~~~~---p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~ 453 (505)
|.|.|..... -.+.++++..+.+.+.-+...| +....|+...+-.-..+.....+ +......+....... ....
T Consensus 328 ~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~-~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~-p~~~ 405 (937)
T COG1025 328 GVFAISYELTDKGLAHYDRVIALTFQYLNLLREKG-IPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMERE-PVEH 405 (937)
T ss_pred ceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccC-Chhh
Confidence 8788876542 4577889999999999999888 88888877666544444333332 223333333222111 1111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcC
Q 010650 454 VDQFLSVLEHITLDDITNIAQKIISSPLTMASYGD 488 (505)
Q Consensus 454 ~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~ 488 (505)
.....-.+..-++++++.+...+.-++..+..+++
T Consensus 406 ~~~~~~~~~~yd~~~~~~~l~~~~pen~R~~lis~ 440 (937)
T COG1025 406 TLYASLVLPRYDPKAIQERLALMTPENARLWLISK 440 (937)
T ss_pred hhchhhcccccCHHHHHHHHHhhCccceEEEEecC
Confidence 23334457788889999998876656666666654
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-29 Score=262.24 Aligned_cols=400 Identities=16% Similarity=0.175 Sum_probs=312.4
Q ss_pred CceEEEEcCCCcEEEE-ecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCC-hHHHHHHHHHcCCeeeee
Q 010650 74 GKVKVTTLENGIRIAS-ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSILAS 151 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~-~~~l~~~l~~~g~~~~~~ 151 (505)
-..+..+|+||+++.+ .|...+..++.+-|+.||..+|.+..|+|||+|||+|.||.+++ .+++..++..+||+.||+
T Consensus 26 r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 26 REYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred cceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 3789999999999995 55335688899999999999999999999999999999999987 566888899999999999
Q ss_pred eccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCC
Q 010650 152 ASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (505)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 230 (505)
|..++|.|.+.+..+.++.+|+.+++++..|.|++++.++++..|..|..+..++-.....+......- +||++....|
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tG 185 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTG 185 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcccc
Confidence 999999999999999999999999999999999999999999999999999888878777777777777 9999999999
Q ss_pred ChhhhcCCC-----HHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCC--CCCcc----CCCceE
Q 010650 231 PESALNRLD-----GTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PKSVY----IGGDYR 298 (505)
Q Consensus 231 ~~~~l~~lt-----~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~--~~~~~----~~~~~~ 298 (505)
..+.|.... .+.|.+||++||.+++|+++|+| .+.+.+..++.+.|+.+++...+.+ +.+++ .+...+
T Consensus 186 N~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~ 265 (974)
T KOG0959|consen 186 NKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVR 265 (974)
T ss_pred chhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcEEE
Confidence 999999988 99999999999999999999999 9999999999999999987765543 12222 233444
Q ss_pred ecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecc-cCCc
Q 010650 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI-FNNT 377 (505)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~-~~~~ 377 (505)
+.+-.....+.+.|+.|+. ...-+.-....+..++|.. ||| +.+ ..|+. .||+-+..++... ..+.
T Consensus 266 v~pik~~~~l~is~~~p~~-~~~y~~kP~~y~~hLighe------g~G----SL~-~~Lk~-~gw~~sl~a~~~~~as~~ 332 (974)
T KOG0959|consen 266 VVPIKDGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHE------GPG----SLL-SYLKR-LGWATSLEAGIPEFASGY 332 (974)
T ss_pred EEeccccceEEEEEecCCc-ccccccCcHHHHHHHhccC------Ccc----hHH-HHHHH-hhchheeecCCCcccccc
Confidence 5555566777888999974 3555667778888898875 343 444 46655 5999999887763 4466
Q ss_pred ceeEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-HcccChHHHHHHHHHHHHHhCCcCC
Q 010650 378 GLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVL-MNLESRVIVSEDIGRQILTYGERKS 453 (505)
Q Consensus 378 g~~~i~~~~~---p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~ 453 (505)
+.|.+.+... -++..+++..+.+.++.+...| .-+.-++.....-...+. +..+.+...+..+..... +-....
T Consensus 333 ~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~-~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq-~~P~~~ 410 (974)
T KOG0959|consen 333 SFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAG-PEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQ-YYPVED 410 (974)
T ss_pred ceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcc-cCChHH
Confidence 7787777643 4577899999999998888766 554444443322221221 122355555666665543 222233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcC
Q 010650 454 VDQFLSVLEHITLDDITNIAQKIISSPLTMASYGD 488 (505)
Q Consensus 454 ~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~ 488 (505)
+-.....+....++-|+.+...+--.+..+++++.
T Consensus 411 il~~~~ll~~~~p~~i~~~~~~L~p~n~~v~~~s~ 445 (974)
T KOG0959|consen 411 VLTGSYLLTEFDPDLIQEVLSSLVPSNMRVILVSR 445 (974)
T ss_pred hhcchhhhhhcChHHHHHHHHhcCcccceeeeeee
Confidence 44445678889999999998776657766666653
No 11
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=220.20 Aligned_cols=393 Identities=11% Similarity=0.099 Sum_probs=296.1
Q ss_pred EcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHc--CCeeeeeecccee
Q 010650 80 TLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAI--GGSILASASREQM 157 (505)
Q Consensus 80 ~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~--g~~~~~~~~~~~~ 157 (505)
.-++|++++...++.+.....+.|+. ++.+..|++|+|||+.+.|+.+++..+.--.+-.. +--+||.|..|.|
T Consensus 26 H~~TGa~l~hi~~~d~~~vFsi~F~T----~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T 101 (978)
T COG1026 26 HEKTGAELAHIKNEDPNNVFSIAFKT----EPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKT 101 (978)
T ss_pred eccCCceEEEecCCCcCceEEEEeec----CCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcc
Confidence 33489999976666666666777776 45678999999999999999999988765555443 3348999999999
Q ss_pred EEEeecc-cccHHHHHHHHHHhhhCCCCChHHHHHH--------------HHHHHHHHHhhhCChHHHHHHHHHHhhc-C
Q 010650 158 GYSFDAL-KTYVPEMVELLVDCVRNPVFLDWEVNEE--------------LRKLKSELGELHNNPQGLLLEAIHSTGY-A 221 (505)
Q Consensus 158 ~~~~~~~-~~~l~~~l~ll~~~~~~p~f~~~~~~~~--------------k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~ 221 (505)
+|-+++. .++.-.++....|.+.+|.+.++.|.++ +..|..|++....++..++++.+.+.+| +
T Consensus 102 ~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~ 181 (978)
T COG1026 102 VYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPG 181 (978)
T ss_pred eeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCC
Confidence 9998775 5689999999999999999999998776 4566778888889999999999999999 8
Q ss_pred CCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhh-cCCCCCCCCCCC-C-CCccCC---
Q 010650 222 GALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPL-LSDLPRLPPPTE-P-KSVYIG--- 294 (505)
Q Consensus 222 ~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~-~~~l~~~~~~~~-~-~~~~~~--- 294 (505)
..|+....|.+..|..+|.+++++||+++|+|+|+.++++| ++.++....++.. +...+....... + ...+..
T Consensus 182 ~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~~~~~ 261 (978)
T COG1026 182 TTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRR 261 (978)
T ss_pred ccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccCcccc
Confidence 89998899999999999999999999999999999999999 9999999999876 554443331111 1 111111
Q ss_pred Cce--Ee---cCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCe-EEEE
Q 010650 295 GDY--RQ---QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQI-QSFS 368 (505)
Q Consensus 295 ~~~--~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~-Y~~~ 368 (505)
... .+ ..+..+..+.+.|.++.. .+..+..++.||..+|-++.+ ++|.++|.+. |++ +.+.
T Consensus 262 ~~~~ypi~~~~~de~q~~~~lsWl~~~~-~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lies-glg~~~~~ 328 (978)
T COG1026 262 KVLEYPISFDEEDEDQGLLSLSWLGGSA-SDAEDSLALEVLEEILLDSAA-----------SPLTQALIES-GLGFADVS 328 (978)
T ss_pred cceeeccCCCCCCCceeEEEEEEecCCc-ccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHc-CCCccccc
Confidence 111 12 234678899999999874 466889999999999999877 9999999997 544 4443
Q ss_pred EeecccCCcceeEEEEE-eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHH--HHHHHHHHH
Q 010650 369 AFNSIFNNTGLFGIYAC-TGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVI--VSEDIGRQI 445 (505)
Q Consensus 369 a~~~~~~~~g~~~i~~~-~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~--~~~~~~~~~ 445 (505)
..+...--...|.+.+. ++.++..+.-+.+.+.++++.++| ++.+.++.++.++.-++......+.. .+.+....+
T Consensus 329 g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~g-i~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~~gw 407 (978)
T COG1026 329 GSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNG-IDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSLYGW 407 (978)
T ss_pred ceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhcccc
Confidence 33333333456666665 566788888899999999999999 99999999999998887765444433 334444455
Q ss_pred HHhCCcCC---HHHHHHHHccCCHHH--HHHHHHHHhc-CC-cEEEEEcCCC
Q 010650 446 LTYGERKS---VDQFLSVLEHITLDD--ITNIAQKIIS-SP-LTMASYGDVI 490 (505)
Q Consensus 446 ~~~~~~~~---~~~~~~~i~~vT~~d--i~~~a~~~l~-~~-~~~~v~G~~~ 490 (505)
+.++.+.. ...+.+.|++--..+ +.++.++||- .+ .+++++=|..
T Consensus 408 ~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~ 459 (978)
T COG1026 408 LNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSP 459 (978)
T ss_pred ccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecCh
Confidence 54555543 234444444444444 9999999998 33 4444444433
No 12
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.7e-21 Score=200.58 Aligned_cols=409 Identities=13% Similarity=0.132 Sum_probs=312.9
Q ss_pred CCCCccCCCCCCCCCCCC-CCCC--CceEEEEcCCCcEEE-EecCC--C-CeEEEEEEEeccccCCCCCCCcHHHHHHHh
Q 010650 52 PSLDTPLEGVSFPPSLPD-FVEP--GKVKVTTLENGIRIA-SETSV--S-PAASIGLYLDFGSVYETPSSCGASNLLEKM 124 (505)
Q Consensus 52 ~~l~~pl~~~~~p~~~~~-~~~~--~~~~~~~L~NGl~v~-~~~~~--~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l 124 (505)
+.+..|.||.+||..+.. +.++ .......=..|.++| .+++. + |+..+.+.++......++.......|+..+
T Consensus 475 ~~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~l 554 (937)
T COG1025 475 IELSLPEPNPFIPDDVSLIKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYL 554 (937)
T ss_pred ccccCCCCCCCCCccccccccccCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHH
Confidence 457789999999995433 1111 111222222367777 45444 4 899999999999888887778888888888
Q ss_pred hccCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHh-h
Q 010650 125 AFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGE-L 203 (505)
Q Consensus 125 ~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~-~ 203 (505)
+ +....++.+.....|.+++...+.+++.++++|.++.+++++..+.+.+.+-.++++.|...|..+.+++++ .
T Consensus 555 a-----~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~ 629 (937)
T COG1025 555 A-----NDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNAL 629 (937)
T ss_pred H-----HHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 8 444555666677889999999999999999999999999999999999999999999999999999999998 4
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCC
Q 010650 204 HNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRL 282 (505)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~ 282 (505)
..+|..++.+.+...+-. ...+.....+.++.++.+++..|...++++....+.++| ++.+++..+++.....++..
T Consensus 630 ~~~p~~~~~~~l~~l~~~--~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~ 707 (937)
T COG1025 630 TGKPYRQALDGLTGLLQV--PYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAI 707 (937)
T ss_pred hcCCHHHHHHHhhhhhCC--CCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhccc
Confidence 588999888888877642 222223355889999999999999999999999999999 99999999988766666544
Q ss_pred CCCCCC-CC--ccCCCceEec---CCCCceEEEEEEeeCCCCCC-ChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHH
Q 010650 283 PPPTEP-KS--VYIGGDYRQQ---ADSPETHIALAFEVPGGWLK-DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYL 355 (505)
Q Consensus 283 ~~~~~~-~~--~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~ 355 (505)
...... ++ ...++..... .....+..++.+... ++ .++.....++.+++. ..+|.
T Consensus 708 ~s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~---~~~~~~~a~s~Ll~~l~~---------------~~ff~ 769 (937)
T COG1025 708 GSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ---YDEIKSSALSSLLGQLIH---------------PWFFD 769 (937)
T ss_pred CCcccCCCceeccCCCeeEeeeccCCcccccceeEeccc---cchHHHHHHHHHHHHHHh---------------HHhHH
Confidence 432111 11 1223332221 223344444555444 34 556666678888876 89999
Q ss_pred HHHhhcCCeEEEEEeecccCCcceeEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccc
Q 010650 356 RVLNEYQQIQSFSAFNSIFNNTGLFGIYACTG---SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLE 432 (505)
Q Consensus 356 ~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~---p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~ 432 (505)
+||++.+++|.|.++.....++..+.++++++ |+...+.++.+.+.+..... ++++++|+..|..+++++.....
T Consensus 770 ~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~--~ms~e~Fe~~k~alin~il~~~~ 847 (937)
T COG1025 770 QLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELR--EMSEEDFEQIKKALINQILQPPQ 847 (937)
T ss_pred HhhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999888877766667777765 66788888999998888777 59999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCcC--CHHHHHHHHccCCHHHHHHHHHHHhc----CCcEEEEEcC
Q 010650 433 SRVIVSEDIGRQILTYGERK--SVDQFLSVLEHITLDDITNIAQKIIS----SPLTMASYGD 488 (505)
Q Consensus 433 s~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vT~~di~~~a~~~l~----~~~~~~v~G~ 488 (505)
+....+..+|..+. .|... ..+...+.++.+|.+++.++....+. .+..+.+.|+
T Consensus 848 nl~e~a~r~~~~~~-~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~~g~~l~~~i~g~ 908 (937)
T COG1025 848 NLAEEASRLWKAFG-RGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYEQGSKLLSHIRGQ 908 (937)
T ss_pred CHHHHHHHHHHHhc-cCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhcccccceeeeeeecc
Confidence 99999999985553 44432 36778899999999999999999887 3455666774
No 13
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-20 Score=200.32 Aligned_cols=412 Identities=15% Similarity=0.150 Sum_probs=322.0
Q ss_pred CCCCCCCccCCCCCCCCCC---CCCCCC-CceEEEEcCCCcEEEE-ecCC--CCeEEEEEEEeccccCCCCCCCcHHHHH
Q 010650 49 SSLPSLDTPLEGVSFPPSL---PDFVEP-GKVKVTTLENGIRIAS-ETSV--SPAASIGLYLDFGSVYETPSSCGASNLL 121 (505)
Q Consensus 49 ~~~~~l~~pl~~~~~p~~~---~~~~~~-~~~~~~~L~NGl~v~~-~~~~--~~~~~i~l~~~~Gs~~e~~~~~g~a~ll 121 (505)
..++.|+.|.||.+||... +..++. ..+....-....++|. +++. .|++.+.+.+.+.-....+...+++.++
T Consensus 479 ~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~ 558 (974)
T KOG0959|consen 479 HLNPELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLY 558 (974)
T ss_pred CccccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHH
Confidence 3447799999999999721 111111 1123334445789996 4444 4899999999999999999999999999
Q ss_pred HHhhccCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHH
Q 010650 122 EKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELG 201 (505)
Q Consensus 122 ~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~ 201 (505)
..++ .....+..+.....|..+..+.+..+..+++.+.+++++.+++.+.+++.+...++..|+..++.+..+++
T Consensus 559 ~~~l-----~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~ 633 (974)
T KOG0959|consen 559 VRLL-----KDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELR 633 (974)
T ss_pred HHHH-----HHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 9999 45555667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhCChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCC
Q 010650 202 E-LHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDL 279 (505)
Q Consensus 202 ~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l 279 (505)
+ ...+|..++.+.++..+-...+.. ....+.++.++.+++..|...++.+..++++|+| ++.+++.++++.....+
T Consensus 634 n~~~~~p~~~a~~~~~lll~~~~W~~--~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l 711 (974)
T KOG0959|consen 634 NHAFDNPYQLANDYLLLLLEESIWSK--EELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL 711 (974)
T ss_pred hhhhccHHHHHHHHHHHHhhccccch--HHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh
Confidence 9 668888888777777664444433 3456889999999999999999999999999999 99999999866655544
Q ss_pred CCCCCCCC-C--------C--CccCCCceEe-----cCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCC
Q 010650 280 PRLPPPTE-P--------K--SVYIGGDYRQ-----QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAG 343 (505)
Q Consensus 280 ~~~~~~~~-~--------~--~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~ 343 (505)
....+.. + . ...+.|...+ ..+.+++.+.+.|++.. .+..+...+.++.+++.
T Consensus 712 -~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~-------- 780 (974)
T KOG0959|consen 712 -KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK-------- 780 (974)
T ss_pred -hccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc--------
Confidence 2221111 1 0 1122232221 23356788888888754 67889999999999998
Q ss_pred CCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEe--CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010650 344 GPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT--GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKE 421 (505)
Q Consensus 344 ~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~--~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~ 421 (505)
.++|+.||++.+++|.|++......+...+.+.++. .++.++..|+.+++.+.+... ++++++++..+.
T Consensus 781 -------ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~ 851 (974)
T KOG0959|consen 781 -------EPAFDQLRTKEQLGYIVSTGVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKS 851 (974)
T ss_pred -------cchHHhhhhHHhhCeEeeeeeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHH
Confidence 889999999999999998877766655555555543 477888889999998888887 699999999999
Q ss_pred HHHHHHHHcccChHHHHHHHHHHHHHhCCcC-C-HHHHHHHHccCCHHHHHHHHHHHhc------CCcEEEEEcC
Q 010650 422 ATKSAVLMNLESRVIVSEDIGRQILTYGERK-S-VDQFLSVLEHITLDDITNIAQKIIS------SPLTMASYGD 488 (505)
Q Consensus 422 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~vT~~di~~~a~~~l~------~~~~~~v~G~ 488 (505)
.++...+.+-.+......++|..+. .+.+. . .+...+.+..+|++|+..+...++. .+.++.+.|.
T Consensus 852 ~lI~~~~ek~~~l~~e~~~~w~ei~-~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~~~a~~~~~lsv~~~~~ 925 (974)
T KOG0959|consen 852 GLIASKLEKPKNLSEESSRYWDEII-IGQYNFDRDEKEVEALKKITKEDVINFFDEYIRKGAAKRKKLSVHVHGK 925 (974)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHH-hhhhcchhhHHHHHHHHhhhHHHHHHHHHhhccccchhcceEEEEecCc
Confidence 9999999999998888889998886 44443 2 4667788999999999999999986 2344555554
No 14
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.89 E-value=2.3e-22 Score=174.99 Aligned_cols=146 Identities=35% Similarity=0.560 Sum_probs=138.4
Q ss_pred EEEEecC-CCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecc
Q 010650 86 RIASETS-VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDAL 164 (505)
Q Consensus 86 ~v~~~~~-~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 164 (505)
||++..+ ..+.+.+.+++++|+++|++...|++|+++||+++|+.+++..++.+.++..|+.++++++++++.|.++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 6776555 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCC
Q 010650 165 KTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAP 231 (505)
Q Consensus 165 ~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 231 (505)
+++++.+|+++.+++.+|.|++++|+++|..+..+++....+|...+.+.++..+| ++||+++..|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999998775
No 15
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.88 E-value=2.2e-20 Score=195.50 Aligned_cols=399 Identities=21% Similarity=0.191 Sum_probs=268.6
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhc-cCCCCCChHHHHHHHHH
Q 010650 66 SLPDFVEPGKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAF-KSTKNRSHLRIVREVEA 143 (505)
Q Consensus 66 ~~~~~~~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-~gt~~~~~~~l~~~l~~ 143 (505)
++|+.++... ....-.|..+|+..+.. +..++++++++.+..... ......|+...+. .||.+++..++..+++.
T Consensus 518 dvp~~~~k~~-l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~~--llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~ 594 (978)
T COG1026 518 DVPDPIEKTS-LETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPSE--LLPYLPLFAFALTNLGTETYSYKELLNQIER 594 (978)
T ss_pred cCCCcccccc-eeeeccCCcceEEeecCCCCeEEEEEEeecCCCChh--hhhhHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 3455554433 33455678888865555 569999999999655544 5555666666664 59999999999999998
Q ss_pred cCCeeeeeec-----------cceeEEEeecccccHHHHHHHHHHhhhCCCC-ChHHHHHHHHHHHHHHHhhhCC-hHHH
Q 010650 144 IGGSILASAS-----------REQMGYSFDALKTYVPEMVELLVDCVRNPVF-LDWEVNEELRKLKSELGELHNN-PQGL 210 (505)
Q Consensus 144 ~g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~~k~~~~~e~~~~~~~-p~~~ 210 (505)
+.|.+++..+ +..+++++.++.++.+++++++.+++.++.| |.++++...++.+..+.+...+ +...
T Consensus 595 ~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~ 674 (978)
T COG1026 595 HTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSI 674 (978)
T ss_pred HhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHH
Confidence 7665444332 3468999999999999999999999999999 6677777777777766664444 6666
Q ss_pred HHHHHHHhhc-CCCCCCCCCCC--hhhhcCCC-----------HHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhh
Q 010650 211 LLEAIHSTGY-AGALGNPLLAP--ESALNRLD-----------GTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPL 275 (505)
Q Consensus 211 ~~~~~~~~~~-~~~~~~~~~~~--~~~l~~lt-----------~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~ 275 (505)
+.....+.++ ...+.....|- .+-|+.+. .+.|++.+++++..+|+.+++.| .+. +.+.+++-
T Consensus 675 A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~--~~~~~e~~ 752 (978)
T COG1026 675 ASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDK--ILDLLENP 752 (978)
T ss_pred HHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhh--hHHHHHHH
Confidence 6555555554 33332221111 12222221 35788899999999999777777 432 22233332
Q ss_pred cCCCCC----C-CCCCCCC---CccCC-CceEecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCC
Q 010650 276 LSDLPR----L-PPPTEPK---SVYIG-GDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPG 346 (505)
Q Consensus 276 ~~~l~~----~-~~~~~~~---~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg 346 (505)
|.++.. . ..+..+. ....+ .......+.+.++..++|..-...+.++|.+++.|+.++|+.
T Consensus 753 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~---------- 822 (978)
T COG1026 753 LLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS---------- 822 (978)
T ss_pred hhhhhcccCcccccCCCCCCcchhhhccccceEEeccHHHHHHHhhhccCCCCCCccchHHHHHHHHhcc----------
Confidence 222221 1 1111111 11111 111222344445555556443322689999999999999995
Q ss_pred CCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH
Q 010650 347 KGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSA 426 (505)
Q Consensus 347 ~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~ 426 (505)
.+||..||++ |+||++++.. ..+.|.|.++...+|+ ..+..+.+.+.++.++.+ ++++.++++++-..++.
T Consensus 823 ----~~lw~~IR~~-GGAYGa~as~--~~~~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~-~~~~~d~~~~ilg~i~~ 893 (978)
T COG1026 823 ----GYLWNKIREK-GGAYGASASI--DANRGVFSFASYRDPN-ILKTYKVFRKSVKDLASG-NFDERDLEEAILGIIST 893 (978)
T ss_pred ----chhHHHHHhh-cccccccccc--ccCCCeEEEEecCCCc-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcc
Confidence 8999999998 5599886654 4456788888888887 677788888888888875 59999999999999988
Q ss_pred HHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHHhc---CCcEEEEEcCC
Q 010650 427 VLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIIS---SPLTMASYGDV 489 (505)
Q Consensus 427 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~---~~~~~~v~G~~ 489 (505)
+.+ .+++......-..+.+.+-.+...+.+++.|.+||++||++++++|+. +.-+++++|..
T Consensus 894 ~d~-p~sp~~~~~~s~~~~~sg~~~~~~qa~re~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~~ 958 (978)
T COG1026 894 LDT-PESPASEGSKSFYRDLSGLTDEERQAFRERLLDVTKEDIKEVMDKYLLNFSSENSIAVFAGE 958 (978)
T ss_pred ccc-ccCCcceehhhHHHHHhcCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccceEEEEech
Confidence 544 456666554444444433334456889999999999999999999987 56777777763
No 16
>PTZ00432 falcilysin; Provisional
Probab=99.88 E-value=5e-20 Score=205.73 Aligned_cols=390 Identities=14% Similarity=0.074 Sum_probs=265.0
Q ss_pred EcCCCcEEEEecCCCC-eEEEEEEEeccccCCCCCCCcHHHHHHHhhcc-CCCCCChHHHHHHHHHcCCeeeee----ec
Q 010650 80 TLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILAS----AS 153 (505)
Q Consensus 80 ~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~~~~~l~~~l~~~g~~~~~~----~~ 153 (505)
...+|++|+..+.+++ .+++.++++.....+ +......|+..++.+ ||.++++.++...++...|+++++ ++
T Consensus 664 ~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~--e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 664 SDGGSVTVLVHPIESRGILYLDFAFSLDSLTV--DELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred ccCCCcceEEEecCCCCeEEEEEEecCCCCCH--HHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3458999997777765 999999999987554 356667788777755 999999999999999877666543 22
Q ss_pred ------------cceeEEEeecccccHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhhhC-ChHHHHHHHHHHhh
Q 010650 154 ------------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE-VNEELRKLKSELGELHN-NPQGLLLEAIHSTG 219 (505)
Q Consensus 154 ------------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e~~~~~~-~p~~~~~~~~~~~~ 219 (505)
...+.+++.++.++++++++++.+++.++.|++.+ +....++.+..+.+... +....+...+.+..
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~ 821 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKF 821 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 23688999999999999999999999999998754 76666666666665433 44444443333222
Q ss_pred cCCCCCCC-CCC--ChhhhcCCC-----------HHHHHHHHHhhcCCCCeEEEEcC-C-CHHhHHHHHHhhcCCCCCC-
Q 010650 220 YAGALGNP-LLA--PESALNRLD-----------GTILEEIVAENFTAPRMVLAASG-V-DLDELLPIAEPLLSDLPRL- 282 (505)
Q Consensus 220 ~~~~~~~~-~~~--~~~~l~~lt-----------~~~l~~f~~~~~~~~~~~l~i~G-~-~~~~~~~~i~~~~~~l~~~- 282 (505)
....+... ..| ...-|+.+. .+.|.++++..|+.+++.+.++| . ..+.+.+.+..++..++..
T Consensus 822 S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~ 901 (1119)
T PTZ00432 822 SVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTF 901 (1119)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccc
Confidence 10111000 111 111122111 34588889999999999999999 5 5567767666677666421
Q ss_pred ---C--CCCCC-CC-c-----cCC--CceEecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCC
Q 010650 283 ---P--PPTEP-KS-V-----YIG--GDYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKG 348 (505)
Q Consensus 283 ---~--~~~~~-~~-~-----~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g 348 (505)
. ....+ .. . +.. ....+..+....+++.+..... +++++..++.|+.++|..
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~------------ 967 (1119)
T PTZ00432 902 KENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN------------ 967 (1119)
T ss_pred ccccccccccccccccccccccCCcccceEEEccCceeEEEEeccccc--CCCccCHHHHHHHHHHcc------------
Confidence 1 01000 00 0 111 1122334455566666643333 467789999999999995
Q ss_pred cccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHH
Q 010650 349 MHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIAT--PKQVTQVQLNRAKEATKSA 426 (505)
Q Consensus 349 ~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~--~g~~t~~el~~ak~~~~~~ 426 (505)
+.||+.||++ |++|++++... ..|.|.++...+|+ ..+.++.+.+..+.+.+ . .+|+++|+++|.+.++.
T Consensus 968 --~yLw~~IR~~-GGAYG~~~~~~---~~G~~~f~SYRDPn-~~~Tl~~f~~~~~~l~~~~~-~~~~~~l~~~iig~~~~ 1039 (1119)
T PTZ00432 968 --SYLWKTVRMS-LGAYGVFADLL---YTGHVIFMSYADPN-FEKTLEVYKEVASALREAAE-TLTDKDLLRYKIGKISN 1039 (1119)
T ss_pred --ccchHHHccc-CCccccCCccC---CCCeEEEEEecCCC-HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc
Confidence 8999999998 55999975432 24777776666665 55556665555555544 2 49999999999999988
Q ss_pred HHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHHhc--CCcEEEEEcCCCCCCC
Q 010650 427 VLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIIS--SPLTMASYGDVINVPG 494 (505)
Q Consensus 427 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~--~~~~~~v~G~~~~~p~ 494 (505)
+... .++..........++.+-..+..+++++.|-++|++||+++|++|.. +...++|+|+..++.+
T Consensus 1040 ~D~p-~~p~~~g~~~~~~~l~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~~~~~~~v~g~~~~~~~ 1108 (1119)
T PTZ00432 1040 IDKP-LHVDELSKLALLRIIRNESDEDRQKFRKDILETTKEDFYRLADLMEKSKEWEKVIAVVNSKTSDT 1108 (1119)
T ss_pred cCCC-CChHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEEEECHHHhhh
Confidence 6554 46666655544455533334567899999999999999999999998 5678899998766543
No 17
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.87 E-value=3.5e-21 Score=173.47 Aligned_cols=174 Identities=24% Similarity=0.370 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCC---CCCC-C-C-C--ccCCCceEe-cCCCCce
Q 010650 237 RLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLP---PPTE-P-K-S--VYIGGDYRQ-QADSPET 306 (505)
Q Consensus 237 ~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~---~~~~-~-~-~--~~~~~~~~~-~~~~~~~ 306 (505)
++|.++|++||+++|.|+||+++++| ++++++.++++++|+.|+... .... . . + ......... ..+.++.
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQS 80 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSE
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999 999999999999999998654 1111 1 1 1 112222222 2334899
Q ss_pred EEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEe
Q 010650 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (505)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~ 386 (505)
.+.++|+.++. .+.++..++.++..+|+++ ++++|+..||++.+++|++.++...+.+.+.|.+++.+
T Consensus 81 ~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~ 148 (184)
T PF05193_consen 81 IVSIAFPGPPI-KDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQV 148 (184)
T ss_dssp EEEEEEEEEET-GTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEE
T ss_pred ccccccccccc-cccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEEEc
Confidence 99999999972 2889999999999999986 55999999999999999999997777788999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010650 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEAT 423 (505)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~ 423 (505)
.|++..++++.+.++++.+.+.| ++++||+++|+++
T Consensus 149 ~~~~~~~~~~~~~~~l~~l~~~~-~s~~el~~~k~~L 184 (184)
T PF05193_consen 149 TPENLDEAIEAILQELKRLREGG-ISEEELERAKNQL 184 (184)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcC
Confidence 99999999999999999999987 9999999999875
No 18
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-18 Score=173.62 Aligned_cols=383 Identities=13% Similarity=0.113 Sum_probs=274.4
Q ss_pred CcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHc-CCeeeeeeccceeEEEee
Q 010650 84 GIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAI-GGSILASASREQMGYSFD 162 (505)
Q Consensus 84 Gl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~ 162 (505)
|++|++-.++++.+. .++-+.. |...+.|+.|-+|||.|+|+++++..-+...+... -++.|++|+.|++.|+++
T Consensus 29 kl~va~~~~pts~vh--G~f~v~T--Ea~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLS 104 (1022)
T KOG0961|consen 29 KLRVAIGEVPTSMVH--GAFSVVT--EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLS 104 (1022)
T ss_pred ceEEEEeecCCccee--eeEEeee--eecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEee
Confidence 899998777776444 3333322 33458899999999999999999998887776654 357999999999999998
Q ss_pred ccc-ccHHHHHHHHHHhhhCCCCChHHHHHH----------HHHHHHHHHhhhCChHHHHHHHHHHhhc--CCCCCCCCC
Q 010650 163 ALK-TYVPEMVELLVDCVRNPVFLDWEVNEE----------LRKLKSELGELHNNPQGLLLEAIHSTGY--AGALGNPLL 229 (505)
Q Consensus 163 ~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~----------k~~~~~e~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~ 229 (505)
+.- +.+-++|....+.+..|.+++++|..+ +..+..|+++....-...+.+.....+| .++|.....
T Consensus 105 tag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTG 184 (1022)
T KOG0961|consen 105 TAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETG 184 (1022)
T ss_pred cccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccC
Confidence 864 679999999999999999999999776 4677788888777777788888899999 778888888
Q ss_pred CChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCC--CCCcc---------CCC-c
Q 010650 230 APESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--PKSVY---------IGG-D 296 (505)
Q Consensus 230 ~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~--~~~~~---------~~~-~ 296 (505)
|..+.|+.+|.+.+++||+++|.++||.+.|+| ++++++....+..-..++......+ .+.++ ... .
T Consensus 185 G~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~ 264 (1022)
T KOG0961|consen 185 GRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTV 264 (1022)
T ss_pred CChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccce
Confidence 899999999999999999999999999999999 9999999987765554443222111 11111 011 1
Q ss_pred eE--ec-CCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhh-cCCeEEEEEeec
Q 010650 297 YR--QQ-ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE-YQQIQSFSAFNS 372 (505)
Q Consensus 297 ~~--~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~-~g~~Y~~~a~~~ 372 (505)
.. +. .|..+..+.++|.++.. .+.....++.+|..+|....- +++-+.+.+- ..++-+++....
T Consensus 265 ~tVefp~~Des~G~v~~aW~g~s~-sD~~t~~a~~vL~dyls~sav-----------apf~~~fVeieDP~assv~f~~~ 332 (1022)
T KOG0961|consen 265 HTVEFPTDDESRGAVEVAWFGHSP-SDLETHSALHVLFDYLSNSAV-----------APFQKDFVEIEDPLASSVSFHIA 332 (1022)
T ss_pred eeeecCCcccccceEEEEEcCCCH-HHhhhHHHHHHHHHHhccccc-----------cccccceEEecCccccceeeeee
Confidence 12 22 34668889999998862 245667889999999987432 5555554443 234544443322
Q ss_pred ccCCcceeEEEEE-eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHhC
Q 010650 373 IFNNTGLFGIYAC-TGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIV--SEDIGRQILTYG 449 (505)
Q Consensus 373 ~~~~~g~~~i~~~-~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~ 449 (505)
+.-.-.+.+.+. .+.++..+....+++.+.+-+ .++-+.+.....+.+-+++.+++.+..- +.-+....+ +|
T Consensus 333 -~~vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~---~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~-yg 407 (1022)
T KOG0961|consen 333 -EGVRCDIRLNFAGVPVEKIDECAPKFLDKLVETA---NIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGDQL-YG 407 (1022)
T ss_pred -cccceeEEEeecCCcHHHhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhhhh-cc
Confidence 222233444444 456777777777777665443 3888888888888888888898876532 223332333 33
Q ss_pred CcC--C------HHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEc
Q 010650 450 ERK--S------VDQFLSVLEHITLDDITNIAQKIISSPLTMASYG 487 (505)
Q Consensus 450 ~~~--~------~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G 487 (505)
..+ . ..++.+.+.+-..+|.+++.++||.++..+.|++
T Consensus 408 nedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVia 453 (1022)
T KOG0961|consen 408 NEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVIA 453 (1022)
T ss_pred CcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEEe
Confidence 322 1 1346778999999999999999999555555554
No 19
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-18 Score=171.75 Aligned_cols=394 Identities=12% Similarity=0.089 Sum_probs=284.5
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHH-HHHHHHH-cCCeeeeeeccce
Q 010650 79 TTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLR-IVREVEA-IGGSILASASREQ 156 (505)
Q Consensus 79 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~-l~~~l~~-~g~~~~~~~~~~~ 156 (505)
..-.-|.++.+.+.+.+--.+++.++.. +++..|+.|++||-...|+.+++-.+ +.+.|.+ ..--.|+.|..|+
T Consensus 57 kH~~Tgae~lhl~reD~N~vFsI~FrTp----p~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~ 132 (998)
T KOG2019|consen 57 KHKKTGAEVLHLDREDENNVFSIVFRTP----PKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDY 132 (998)
T ss_pred eecCCCceeEeeccCCCCceeEEEeecC----CCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCc
Confidence 3334688998655554333345556553 56789999999999999999987544 4444433 3345799999999
Q ss_pred eEEEeecc-cccHHHHHHHHHHhhhCCCCChHHHHHH------------------HHHHHHHHHhhhCChHHHHHHHHHH
Q 010650 157 MGYSFDAL-KTYVPEMVELLVDCVRNPVFLDWEVNEE------------------LRKLKSELGELHNNPQGLLLEAIHS 217 (505)
Q Consensus 157 ~~~~~~~~-~~~l~~~l~ll~~~~~~p~f~~~~~~~~------------------k~~~~~e~~~~~~~p~~~~~~~~~~ 217 (505)
+.|-+.+. ++++-.+.+...|....|.+.+.+|.++ |..|-.|++....+|...+...+.+
T Consensus 133 T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq 212 (998)
T KOG2019|consen 133 TFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQ 212 (998)
T ss_pred ceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHH
Confidence 99988665 5799999999999999999877777665 6677788888889999999999999
Q ss_pred hhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCCC--CccC
Q 010650 218 TGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVYI 293 (505)
Q Consensus 218 ~~~-~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~~ 293 (505)
.+| ++.||....|++..|..++.+++++||+++|.|+|..+...| +..++...+++.-|............. ..+.
T Consensus 213 ~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~ 292 (998)
T KOG2019|consen 213 ALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFD 292 (998)
T ss_pred hhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccc
Confidence 999 999999899999999999999999999999999999999999 999999999987666553332222111 1111
Q ss_pred CC-ceE-------ecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCe-
Q 010650 294 GG-DYR-------QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQI- 364 (505)
Q Consensus 294 ~~-~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~- 364 (505)
.. +.. ...+..++...+.|-.+.. .+..+..++.+|..||-+|.| |++|+.|.|. |++
T Consensus 293 kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiES-GLGt 359 (998)
T KOG2019|consen 293 KPRRVVEKGPADPGDLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPS-----------SPFYKALIES-GLGT 359 (998)
T ss_pred cCceeeeecCCCCCCCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHc-CCCc
Confidence 11 111 1122456666677766653 467889999999999998766 9999999997 444
Q ss_pred -EEEEEeecccCCcceeEEEEEeC-cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChH-HHHHHH
Q 010650 365 -QSFSAFNSIFNNTGLFGIYACTG-SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRV-IVSEDI 441 (505)
Q Consensus 365 -Y~~~a~~~~~~~~g~~~i~~~~~-p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~-~~~~~~ 441 (505)
.++.+++....-.+.|.|....- .+.+..+.+.+...+.+++..| ++.+.++...+++.-++..+-...+ ..+..+
T Consensus 360 EfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g-fd~drieAil~qiEislk~qst~fGL~L~~~i 438 (998)
T KOG2019|consen 360 EFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG-FDNDRIEAILHQIEISLKHQSTGFGLSLMQSI 438 (998)
T ss_pred ccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence 44544444444567888877754 4566777788889999999998 9999999988887766555443322 233444
Q ss_pred HHHHHHhCCcCCH-------HHHHHHHccCCHHHHHHHHHHHhcC---CcEEEEEcCCC
Q 010650 442 GRQILTYGERKSV-------DQFLSVLEHITLDDITNIAQKIISS---PLTMASYGDVI 490 (505)
Q Consensus 442 ~~~~~~~~~~~~~-------~~~~~~i~~vT~~di~~~a~~~l~~---~~~~~v~G~~~ 490 (505)
...+.+..++... +.+...+..-.+.=++...++|+.. ++++.+.++.+
T Consensus 439 ~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e 497 (998)
T KOG2019|consen 439 ISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPE 497 (998)
T ss_pred hhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCch
Confidence 4444444454332 2344455555677788999999983 34555556543
No 20
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.2e-18 Score=169.50 Aligned_cols=383 Identities=16% Similarity=0.106 Sum_probs=253.9
Q ss_pred EEcCCCcEEEEecCCC-CeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeee--ecc-
Q 010650 79 TTLENGIRIASETSVS-PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILAS--ASR- 154 (505)
Q Consensus 79 ~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~--~~~- 154 (505)
...-||++|...+... ..+++++++..++..+. -.+.+.-+++.++..||+..+..++.+.+..+.|.++++ +..
T Consensus 564 v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~ 642 (998)
T KOG2019|consen 564 VGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSD 642 (998)
T ss_pred eeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccC
Confidence 3445999999777775 49999999999996665 456677777888888999999999999999987655554 322
Q ss_pred -------ceeEEEeecccccHHHHHHHHHHhhhCCCCCh-HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCC
Q 010650 155 -------EQMGYSFDALKTYVPEMVELLVDCVRNPVFLD-WEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALG 225 (505)
Q Consensus 155 -------~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~ 225 (505)
-.+.+...++..+++.+++++...+.++.|.+ +.|+.......+++.+.-.+....+...-..+.+ ...+-
T Consensus 643 ~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i 722 (998)
T KOG2019|consen 643 DGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWI 722 (998)
T ss_pred CCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccch
Confidence 23677888888999999999999999999985 4566666666666665444333222222222222 11111
Q ss_pred CCCCCChhhh------cCCC-------HHHHHHHHHhhcCCCCeEEEEcC--CCHHhHHHHHHhhcCCCCCC-CCCCC--
Q 010650 226 NPLLAPESAL------NRLD-------GTILEEIVAENFTAPRMVLAASG--VDLDELLPIAEPLLSDLPRL-PPPTE-- 287 (505)
Q Consensus 226 ~~~~~~~~~l------~~lt-------~~~l~~f~~~~~~~~~~~l~i~G--~~~~~~~~~i~~~~~~l~~~-~~~~~-- 287 (505)
...+|-.+.+ .+.. .+.|.++.+-+.+.++|.+.|.. ..+..+++.+++++..+|.. +....
T Consensus 723 ~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st 802 (998)
T KOG2019|consen 723 SEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKST 802 (998)
T ss_pred HhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccC
Confidence 1111112111 1111 24566777667789999999988 89999999999999988842 22221
Q ss_pred CCCcc--CCCceEecCC-CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCe
Q 010650 288 PKSVY--IGGDYRQQAD-SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQI 364 (505)
Q Consensus 288 ~~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~ 364 (505)
+.+.. .....++..+ -+..++.-+..+-+ +++++-..+.|++.+|.. ..||.++|++.| +
T Consensus 803 ~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRekGG-A 865 (998)
T KOG2019|consen 803 WDARLPLRSEAIRVVIPTFQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREKGG-A 865 (998)
T ss_pred ccccCCCCceeEEEeccccchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHhcC-c
Confidence 11111 1112223333 22333333333333 688999999999999985 899999999855 8
Q ss_pred EEEEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHH
Q 010650 365 QSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQ 444 (505)
Q Consensus 365 Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~ 444 (505)
|+-++.+ ....|.|.++...+|+ ..+.++.+...-.-++. +.+++++|++||....++... ...+.... +. +
T Consensus 866 YGgg~s~--~sh~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~-~~~~~~dldeAkl~~f~~VDa-p~~P~~kG--~~-~ 937 (998)
T KOG2019|consen 866 YGGGCSY--SSHSGVFSFYSYRDPN-PLKTLDIFDGTGDFLRG-LDVDQQDLDEAKLGTFGDVDA-PQLPDAKG--LL-R 937 (998)
T ss_pred cCCcccc--ccccceEEEEeccCCc-hhhHHHhhcchhhhhhc-CCccccchhhhhhhhcccccC-CcCCcccc--hH-H
Confidence 8775544 4456788888877776 44555555544443433 359999999999998877433 33333332 22 2
Q ss_pred HHHhCCc-CCHHHHHHHHccCCHHHHHHHHHHHhc-C-C-cEEEEEcC
Q 010650 445 ILTYGER-KSVDQFLSVLEHITLDDITNIAQKIIS-S-P-LTMASYGD 488 (505)
Q Consensus 445 ~~~~~~~-~~~~~~~~~i~~vT~~di~~~a~~~l~-~-~-~~~~v~G~ 488 (505)
.+ .|.. +..+..++.|-+++..|+.++|.+|+. . + .++++.|+
T Consensus 938 fl-~gvtDemkQarREqll~vSl~d~~~vae~yl~~~~~~~~vav~g~ 984 (998)
T KOG2019|consen 938 FL-LGVTDEMKQARREQLLAVSLKDFKAVAEAYLGVGDKGVAVAVAGP 984 (998)
T ss_pred HH-hcCCHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCcceEEEeeCc
Confidence 33 4444 446777889999999999999999997 3 3 44555554
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-10 Score=116.23 Aligned_cols=369 Identities=14% Similarity=0.099 Sum_probs=229.4
Q ss_pred ecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhcc------CCCC----CChHHHHHHHHHcCCeeeeee-----cc
Q 010650 90 ETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK------STKN----RSHLRIVREVEAIGGSILASA-----SR 154 (505)
Q Consensus 90 ~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~------gt~~----~~~~~l~~~l~~~g~~~~~~~-----~~ 154 (505)
..-++..+.+..+++..... -.......++..+++. |+-+ .+..++.+.+....+..+..+ -+
T Consensus 556 ~h~ps~Fvel~fl~dss~i~--~sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~ 633 (1022)
T KOG0961|consen 556 HHCPSKFVELFFLLDSSNIS--ISLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633 (1022)
T ss_pred ccCchHHHhHhhhhccccCc--hhhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccch
Confidence 33344455555666655544 2344445555555543 4333 234555555554444333333 35
Q ss_pred ceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCC--CCC
Q 010650 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPL--LAP 231 (505)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~--~~~ 231 (505)
+-+.+.+++..++.+..++++..++....||++++....+++..++...+.|....+.......+| ...+.... +--
T Consensus 634 ~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~ 713 (1022)
T KOG0961|consen 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVL 713 (1022)
T ss_pred hheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHH
Confidence 668899999999999999999999999999999999999999999999999988888888888888 54443221 111
Q ss_pred hhhhcCCC----------HHHHHHHHHhhcCCCCeEEEEcC-CCH-HhHHHHHHhhcCCCCCCCCCCCC---------CC
Q 010650 232 ESALNRLD----------GTILEEIVAENFTAPRMVLAASG-VDL-DELLPIAEPLLSDLPRLPPPTEP---------KS 290 (505)
Q Consensus 232 ~~~l~~lt----------~~~l~~f~~~~~~~~~~~l~i~G-~~~-~~~~~~i~~~~~~l~~~~~~~~~---------~~ 290 (505)
++-++.|. .+.++...+-....+.+.+.++| ++. +....-....+.+..-+.+...- .+
T Consensus 714 Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~s 793 (1022)
T KOG0961|consen 714 EKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENVS 793 (1022)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCcccc
Confidence 12222222 12233322212345678889999 653 22221112222221111000000 01
Q ss_pred -ccCCCc--eEec-CCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEE
Q 010650 291 -VYIGGD--YRQQ-ADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQS 366 (505)
Q Consensus 291 -~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~ 366 (505)
.+..+. ..+. +..+.+.+....+....| .+++.+...+++++|+. |..++|+.||.. |++|+
T Consensus 794 ~e~gsssk~~~I~~p~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------~eGPfW~~IRG~-GLAYG 859 (1022)
T KOG0961|consen 794 LELGSSSKELLIGVPGSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------CEGPFWRAIRGD-GLAYG 859 (1022)
T ss_pred eeccCCcceeEecCCCccccceeeeccccccc-CCcchhHHHHHHHHHHh------------cccchhhhhccc-chhcc
Confidence 111122 2232 234556666555555555 77899999999999997 668999999997 89999
Q ss_pred EEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHcccChHHHH--HHHHH
Q 010650 367 FSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIAT-PKQVTQVQLNRAKEATKSAVLMNLESRVIVS--EDIGR 443 (505)
Q Consensus 367 ~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~-~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~--~~~~~ 443 (505)
+..+..+..+...|.||...+|-++ .+.-.+.++++.. .|++++.+++-||...+..+........+-+ ..+..
T Consensus 860 anm~~~~d~~~~~~~iyr~ad~~ka---ye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~Eng~~~~a~~~~~l~ 936 (1022)
T KOG0961|consen 860 ANMFVKPDRKQITLSIYRCADPAKA---YERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKRENGTVSGAAKISILN 936 (1022)
T ss_pred ceeEEeccCCEEEEEeecCCcHHHH---HHHHHHHHHHHhcCceeecHHHhccchHHHHHHHHHHhccceechHHHHHHH
Confidence 9888777666666777777765544 4455556666666 4589999999999999877544321211111 12222
Q ss_pred HHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHHhc
Q 010650 444 QILTYGERKSVDQFLSVLEHITLDDITNIAQKIIS 478 (505)
Q Consensus 444 ~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~ 478 (505)
.+...+. .....+++.|.+||.+|+.+..+.|+.
T Consensus 937 ~~~q~~~-~fn~~~leri~nvT~~~~~~~~~~y~~ 970 (1022)
T KOG0961|consen 937 NFRQTPH-PFNIDLLERIWNVTSEEMVKIGGPYLA 970 (1022)
T ss_pred HHHhcCC-cccHHHHHHHHHhhHHHHHHhccccee
Confidence 3222222 335789999999999999999988764
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.64 E-value=5.8e-07 Score=84.74 Aligned_cols=120 Identities=25% Similarity=0.273 Sum_probs=84.5
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhcc-CCCCCChHHHHHHHHH
Q 010650 66 SLPDFVEPGKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEA 143 (505)
Q Consensus 66 ~~~~~~~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~~~~~l~~~l~~ 143 (505)
+++..++..+++...+ +|++|+..+.+ +..+++.++++.+.... +......|+..++.+ ||+++++.++...+..
T Consensus 61 Di~~~~~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~--e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~ 137 (248)
T PF08367_consen 61 DIPREIEKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPE--EDLPYLPLLTDLLGELGTKNYSYEELSNEIDL 137 (248)
T ss_dssp GS-SS------EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-C--CCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHH
T ss_pred hcCCCCCCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCH--HHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4555555555555544 78999976666 45999999999985554 356667778888866 9999999999999999
Q ss_pred cCCeeeeeec-----------cceeEEEeecccccHHHHHHHHHHhhhCCCCChHH
Q 010650 144 IGGSILASAS-----------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE 188 (505)
Q Consensus 144 ~g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~ 188 (505)
+.|++++++. ...+.++++|+.++++++++++.+++.+++|++.+
T Consensus 138 ~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~ 193 (248)
T PF08367_consen 138 YTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKE 193 (248)
T ss_dssp HSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HH
T ss_pred hCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHH
Confidence 8877766653 12578999999999999999999999999998763
No 23
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.33 E-value=2.8e-05 Score=76.09 Aligned_cols=186 Identities=19% Similarity=0.294 Sum_probs=115.7
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeeccceeE
Q 010650 79 TTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMG 158 (505)
Q Consensus 79 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~ 158 (505)
..|+||+||...+.-..-+++++. +.|--.+-.+-.|+|||+||++.. +++..+ ..|++|+|.+++
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILIs----FD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHHh---------hcccchhhhhhh
Confidence 579999999988877778888764 445444445789999999999953 333222 348999999999
Q ss_pred EEeeccccc-HHHHHHHHHHhhhC-----CCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCCh
Q 010650 159 YSFDALKTY-VPEMVELLVDCVRN-----PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPE 232 (505)
Q Consensus 159 ~~~~~~~~~-l~~~l~ll~~~~~~-----p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (505)
|-+.+.+.. ...++.-+..++.. ..|+...++...+.+..|+-= .|-.-+.++.+.-.. ++.+.+ .|..
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDvLtfL~-gGDLYN--GGRi 142 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDVLTFLG-GGDLYN--GGRI 142 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhc-CCcccC--CchH
Confidence 999888764 45566666666654 235555555544444444322 222223333333222 333332 4556
Q ss_pred hhhcCCCHHHHHHHHHhhc---CCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCCC
Q 010650 233 SALNRLDGTILEEIVAENF---TAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPT 286 (505)
Q Consensus 233 ~~l~~lt~~~l~~f~~~~~---~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~~ 286 (505)
..++++ +++.+.....+ ...|+++++--+++ .+..++++.||.||..+...
T Consensus 143 ~ML~~l--~~i~~mL~~RM~~I~GpniVIFVk~l~~-~~l~lL~~TFGtLP~cP~~I 196 (590)
T PF03410_consen 143 DMLNNL--NDIRNMLSNRMHRIIGPNIVIFVKELNP-NILSLLSNTFGTLPSCPLTI 196 (590)
T ss_pred HHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccCH-HHHHHHHHhcCCCCCCcccc
Confidence 666655 34444443333 44566655544776 46789999999999877543
No 24
>PHA03081 putative metalloprotease; Provisional
Probab=98.16 E-value=6.5e-05 Score=73.64 Aligned_cols=185 Identities=18% Similarity=0.288 Sum_probs=116.6
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeeccceeE
Q 010650 79 TTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMG 158 (505)
Q Consensus 79 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~ 158 (505)
..|+||+||...+.-...+++++. +.|--.+-.+-.|+|||+||++.. ++...+ ..|++|.+.++.
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili~----fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHHh---------cccchhhhhhHh
Confidence 579999999988877777787764 445544445789999999999952 222222 348899999999
Q ss_pred EEeeccccc-HHHHHHHHHHhhhCCC-----CChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCCh
Q 010650 159 YSFDALKTY-VPEMVELLVDCVRNPV-----FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPE 232 (505)
Q Consensus 159 ~~~~~~~~~-l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (505)
|-+.+.+.. ...++.-+..++.... |+...++...+.+..|+-= .|-.-+.++.+.-.. ++.+.+ .|..
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYF--RnEvfHCmDvLTfL~-gGDLYN--GGRi 142 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYF--RNEVFHCMDVLTFLG-GGDLYN--GGRI 142 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhh--hhhhHHHHHHHHHhc-CCcccC--CchH
Confidence 988887653 4678888888887765 4444444433333333221 222223344333322 333333 4566
Q ss_pred hhhcCCCHHHHHHHHHhhc---CCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCC
Q 010650 233 SALNRLDGTILEEIVAENF---TAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP 285 (505)
Q Consensus 233 ~~l~~lt~~~l~~f~~~~~---~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~ 285 (505)
.+|+++ +++++...+.+ ...|+++++--.++ .+..++++.||.||..+..
T Consensus 143 ~ML~~l--~~i~~~L~~RM~~I~GpniVIFVk~ln~-~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 143 DMLDNL--NDVRDMLSNRMHRISGPNIVIFVKELNP-NTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred HHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccCH-HHHHHHHHhcCCCCCCccc
Confidence 777665 45555544443 34566655544776 4678999999999987754
No 25
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=97.93 E-value=0.00012 Score=75.53 Aligned_cols=182 Identities=18% Similarity=0.142 Sum_probs=120.6
Q ss_pred CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEE
Q 010650 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i 382 (505)
.+...+.+.+.....+..........+|.+++..|.- +.|. .-+.+.+ ++.|.. ..++.+.. ....
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~---~~~~----~~i~~~~-~~~G~~--~na~ts~d----~t~y 101 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTT---GLPS----AELAEAF-EKLGGQ--LNAFTSFD----YTVY 101 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCC---CCCh----HHHHHHH-HHhcCe--eeccccch----hhhh
Confidence 4555566666644433345567788899999976521 0000 1455444 444533 33333221 1122
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC--CHHHHHHH
Q 010650 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQFLSV 460 (505)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 460 (505)
++.+.+++.+++++.+.+.+.+- .+++++|++-|..++..+.+..+++...+.......+..+.+. ++.-..+.
T Consensus 102 ~~~~l~~~~~~~l~llad~l~~p----~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~ 177 (438)
T COG0612 102 YLSVLPDNLDKALDLLADILLNP----TFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEES 177 (438)
T ss_pred hhhhchhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHH
Confidence 33356778888888777766543 5999999999999999999999999888877777766443332 23334688
Q ss_pred HccCCHHHHHHHHHHHhc-CCcEEEEEcCCCCCCCHHHHHhHh
Q 010650 461 LEHITLDDITNIAQKIIS-SPLTMASYGDVINVPGYESVSSKF 502 (505)
Q Consensus 461 i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~~~~~~ 502 (505)
|+++|++||+++.++|.. ++.+++++||.+.---.+.+.+.|
T Consensus 178 I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f 220 (438)
T COG0612 178 IEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYF 220 (438)
T ss_pred HHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHH
Confidence 999999999999999999 999999999975433333444443
No 26
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=97.72 E-value=0.0027 Score=68.17 Aligned_cols=168 Identities=9% Similarity=-0.001 Sum_probs=109.6
Q ss_pred CCCceEEEEEEeeCCCCCCC--hhhHHHHHHHHhcCCCCCCCCCCCCCCcccH-HHHHHHhhcCCeEEEEEeecccCCcc
Q 010650 302 DSPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTR-LYLRVLNEYQQIQSFSAFNSIFNNTG 378 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~-L~~~lR~~~g~~Y~~~a~~~~~~~~g 378 (505)
+.+.+.+.+.+.... ..+ .......++.++|..|+. .+... =+.+..++.|..+++ +.+. -
T Consensus 18 ~~p~vav~l~v~aGS--~~Ep~~~~GLAHfLEHMLFkGT~--------~~~~~~~i~~~le~lGG~lNA--~Ts~----d 81 (696)
T TIGR02110 18 DAKRAAALLRVAAGS--HDEPSAWPGLAHFLEHLLFLGGE--------RFQGDDRLMPWVQRQGGQVNA--TTLE----R 81 (696)
T ss_pred CCCEEEEEEEEeecc--CCCCCCCCcHHHHHHHHHhcCCC--------CCCcHHHHHHHHHHhCCeEEE--EEcC----C
Confidence 356677777777654 332 346677888888876531 12221 133444556654433 3222 2
Q ss_pred eeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC--CHHH
Q 010650 379 LFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQ 456 (505)
Q Consensus 379 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~ 456 (505)
...+++.+.+++..++++.+.+.+.+ ..++++++++-|..++..+....+++...........++.+.+. +..-
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~----P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iG 157 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLAR----PLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAG 157 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 35567778888888777766654443 25999999999999999999888888877766555544322221 1111
Q ss_pred HHHHHcc---CCHHHHHHHHHHHhc-CCcEEEEEcCC
Q 010650 457 FLSVLEH---ITLDDITNIAQKIIS-SPLTMASYGDV 489 (505)
Q Consensus 457 ~~~~i~~---vT~~di~~~a~~~l~-~~~~~~v~G~~ 489 (505)
..+.|++ +|.+||+++.+++.. ++.+++++||.
T Consensus 158 t~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdv 194 (696)
T TIGR02110 158 SRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQ 194 (696)
T ss_pred CHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCC
Confidence 2334554 459999999999998 89999999986
No 27
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.083 Score=51.37 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=114.6
Q ss_pred CCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeE
Q 010650 302 DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~ 381 (505)
....+.|.+.+......-+.+++.....|..+...|.- .|--..|-.+ ....++..+.|...-.-.
T Consensus 51 ~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~-----------~Rs~~alElE---ieniGahLNAytSReqT~ 116 (467)
T KOG0960|consen 51 SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTK-----------NRSQAALELE---IENIGAHLNAYTSREQTV 116 (467)
T ss_pred CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCC-----------cchhHHHHHH---HHHHHHHhccccccccee
Confidence 34566777776665433357888999999986554321 3332233211 112333444444334455
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC--CHHHHHH
Q 010650 382 IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQFLS 459 (505)
Q Consensus 382 i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~ 459 (505)
.|+.+-++.++++++.+.+.+.+- .+.+.++++-|..++.+.....++-....-+.....-+.|.|. ...--.+
T Consensus 117 yyakal~~dv~kavdiLaDIlqns----~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~e 192 (467)
T KOG0960|consen 117 YYAKALSKDVPKAVDILADILQNS----KLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSE 192 (467)
T ss_pred eehhhccccchHHHHHHHHHHHhC----ccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhh
Confidence 677888888999888877755442 4999999999999988877665554444445544444566664 3455678
Q ss_pred HHccCCHHHHHHHHHHHhc-CCcEEEEEcCCCC
Q 010650 460 VLEHITLDDITNIAQKIIS-SPLTMASYGDVIN 491 (505)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~ 491 (505)
.|++|+.+|++++++...+ .+++++..|.++.
T Consensus 193 nI~si~r~DL~~yi~thY~~~RmVlaaaGgV~H 225 (467)
T KOG0960|consen 193 NIKSISRADLKDYINTHYKASRMVLAAAGGVKH 225 (467)
T ss_pred hhhhhhHHHHHHHHHhcccCccEEEEecCCcCH
Confidence 8999999999999998887 8888888897643
No 28
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.096 Score=51.00 Aligned_cols=162 Identities=15% Similarity=0.020 Sum_probs=105.8
Q ss_pred eEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCC--------hHH-----HH--HHHHHcCCeeeeeeccceeEEE
Q 010650 96 AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS--------HLR-----IV--REVEAIGGSILASASREQMGYS 160 (505)
Q Consensus 96 ~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~--------~~~-----l~--~~l~~~g~~~~~~~~~~~~~~~ 160 (505)
..++.+-+.+-+..++ +.....++.-|+ .|-+.+| +.+ ++ .+++...+.-..+.+..-++++
T Consensus 264 ltHv~lg~Eg~~~~de--D~v~~avLq~lm-GGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~ 340 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDE--DFVALAVLQMLM-GGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIY 340 (472)
T ss_pred eeeeeEeeccCCCCCh--hHHHHHHHHHHh-cCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEe
Confidence 4566666666655554 444444444444 3333333 111 11 1344444555666777778999
Q ss_pred eecccccHHHHHHHHHHhhhCCC--CChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCC
Q 010650 161 FDALKTYVPEMVELLVDCVRNPV--FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRL 238 (505)
Q Consensus 161 ~~~~~~~l~~~l~ll~~~~~~p~--f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 238 (505)
++++++...++++++..-+.+.. .+++++++.|.+++..+-.+..+-.-.+.+.-++.+- +....++....+.|+++
T Consensus 341 ~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~-~g~rk~p~e~~~~Ie~l 419 (472)
T KOG2067|consen 341 ASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLT-TGERKPPDEFIKKIEQL 419 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHh-ccCcCCHHHHHHHHHhc
Confidence 99999999999999987776533 8899999999999998887555544455666666653 22223333344788999
Q ss_pred CHHHHHHHHHhhcCCCCeEEEEcC
Q 010650 239 DGTILEEIVAENFTAPRMVLAASG 262 (505)
Q Consensus 239 t~~~l~~f~~~~~~~~~~~l~i~G 262 (505)
+.+|+.++..+.++. +-++..-|
T Consensus 420 t~~DI~rva~kvlt~-~p~va~~G 442 (472)
T KOG2067|consen 420 TPSDISRVASKVLTG-KPSVAAFG 442 (472)
T ss_pred CHHHHHHHHHHHhcC-CceeccCC
Confidence 999999999998853 44555555
No 29
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=95.58 E-value=0.66 Score=39.69 Aligned_cols=129 Identities=15% Similarity=0.089 Sum_probs=83.8
Q ss_pred CCCceEEEEEEeeCCCCCCC--hhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcce
Q 010650 302 DSPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGL 379 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~ 379 (505)
+.+.+.+.+.|.+.. ..+ .......++..++..++. ++.+.=..+..++.|..+.+... ...
T Consensus 9 ~~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs~--------~~~~~~l~~~l~~~G~~~~~~t~------~d~ 72 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGSK--------KYSSDELQEELESLGASFNASTS------RDS 72 (149)
T ss_dssp TSSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBBS--------SSBHHHHHHHHHHTTCEEEEEEE------SSE
T ss_pred CCCEEEEEEEEeecc--CCCCCCCCchhhhhhhhcccccc--------hhhhhhhHHHhhhhccccceEec------ccc
Confidence 466777778887654 333 234677788887775421 22232233444556766644332 235
Q ss_pred eEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCC
Q 010650 380 FGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGE 450 (505)
Q Consensus 380 ~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 450 (505)
..+++.+.+++..++++.+.+.+..- .++++++++.|..+...+....+++...+..........+.
T Consensus 73 t~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~ 139 (149)
T PF00675_consen 73 TSYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGH 139 (149)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccC
Confidence 66777888888888888777766543 49999999999999999888877776666555555544444
No 30
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=87.69 E-value=5.1 Score=34.84 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=64.7
Q ss_pred cEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHH-HcCCe--eeeeec----ccee
Q 010650 85 IRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE-AIGGS--ILASAS----REQM 157 (505)
Q Consensus 85 l~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~-~~g~~--~~~~~~----~~~~ 157 (505)
-.+.....+.+...+.+.+.+..... ........++.+++..+ ....+...+. ..|.. ++++.. ...+
T Consensus 68 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~ 142 (184)
T PF05193_consen 68 KEIVIPSKDESQSIVSIAFPGPPIKD-SKDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGLF 142 (184)
T ss_dssp EEEEEEESSSSSEEEEEEEEEEETGT-STTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEEE
T ss_pred cccccccccccccccccccccccccc-cchhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceEE
Confidence 34444444445666667777666522 23677788888888654 2234556665 44433 333321 2346
Q ss_pred EEEeecccccHHHHHHHHHHhhhC---CCCChHHHHHHHHHH
Q 010650 158 GYSFDALKTYVPEMVELLVDCVRN---PVFLDWEVNEELRKL 196 (505)
Q Consensus 158 ~~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~ 196 (505)
.+.+.+.++++.++++.+.+.+.. -.+++++|++.|+.+
T Consensus 143 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 143 SISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 677777777888877777666644 249999999988764
No 31
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=86.87 E-value=23 Score=35.11 Aligned_cols=167 Identities=11% Similarity=0.063 Sum_probs=93.7
Q ss_pred cCCCCceEEEEEEeeCCCCCCChhh--HHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCc
Q 010650 300 QADSPETHIALAFEVPGGWLKDKEA--IILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNT 377 (505)
Q Consensus 300 ~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~ 377 (505)
+...+.+.+.+.|.... ..++.. ....+|...-+.... + ..-++-+|+-... ++......++
T Consensus 38 e~~~~is~l~l~~~AGS--RYe~~~~~G~sHllr~f~g~~Tq--------~--~sal~ivr~se~~----GG~Lss~~tR 101 (429)
T KOG2583|consen 38 EAPTAISSLSLAFRAGS--RYEPADQQGLSHLLRNFVGRDTQ--------E--RSALKIVRESEQL----GGTLSSTATR 101 (429)
T ss_pred cCCCcceEEEEEEecCc--cCCccccccHHHHHHHhcccCcc--------c--cchhhhhhhhHhh----Cceeeeeeec
Confidence 34567899999998876 444443 444455443332110 0 2223445554442 2222333345
Q ss_pred ceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHHHHHHcccChHHHH-HHHHHHHHHhCCcCCHH
Q 010650 378 GLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKE-ATKSAVLMNLESRVIVS-EDIGRQILTYGERKSVD 455 (505)
Q Consensus 378 g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~-~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ 455 (505)
-.|++.+.+-.+..+- .++.+.++.....|-..||+..+- .+.. ....+++...+ +.+-...+..|.-.+.-
T Consensus 102 e~~~~tvt~lrd~~~~----~l~~L~~V~~~paFkPwEl~D~~~~ti~~--~l~~~t~~~~a~e~lH~aAfRngLgnslY 175 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEY----YLSLLGDVLDAPAFKPWELEDVVLATIDA--DLAYQTPYTIAIEQLHAAAFRNGLGNSLY 175 (429)
T ss_pred ceEEEEEEEecccHHH----HHHHHHHhhcccCcCchhhhhhhhhhhHH--HhhhcChHHHHHHHHHHHHHhcccCCccc
Confidence 5788888887776643 444555566653478888877773 3322 23344444443 34333333333333221
Q ss_pred HHHHHHccCCHHHHHHHHHHHhc-CCcEEEEEcC
Q 010650 456 QFLSVLEHITLDDITNIAQKIIS-SPLTMASYGD 488 (505)
Q Consensus 456 ~~~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~ 488 (505)
--.-.+.+++.+||..|+++.+. .+..++-+|.
T Consensus 176 ~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~nv 209 (429)
T KOG2583|consen 176 SPGYQVGSVSSSELKDFAAKHFVKGNAVLVGVNV 209 (429)
T ss_pred CCcccccCccHHHHHHHHHHHhhccceEEEecCC
Confidence 11236999999999999999887 8888777774
No 32
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=83.50 E-value=1.7 Score=26.03 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010650 399 VRELILIATPKQVTQVQLNRAKEATK 424 (505)
Q Consensus 399 ~~~l~~~~~~g~~t~~el~~ak~~~~ 424 (505)
++.++.+...|.+|++|+++.|..+.
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45667777778899999999998765
No 33
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=61.63 E-value=1.4e+02 Score=27.90 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=71.5
Q ss_pred CCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcC-CeEEEEEeeccc---CCc
Q 010650 302 DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQ-QIQSFSAFNSIF---NNT 377 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g-~~Y~~~a~~~~~---~~~ 377 (505)
....+++.+.|+.+. ...++...+.++..+|+.-+. ++-=+..|-..+...-| ...++.+..... .-.
T Consensus 88 TnGI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT------~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~ 159 (248)
T PF08367_consen 88 TNGIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT------KNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYR 159 (248)
T ss_dssp -TTEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B------SSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCE
T ss_pred CCCeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC------CCCCHHHHHHHHHHhCCCeEEEeeeccCCCCcccee
Confidence 356789999999987 678888999999999996421 11112345445555444 222222222221 123
Q ss_pred ceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHHHHHccc
Q 010650 378 GLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQV-QLNRAKEATKSAVLMNLE 432 (505)
Q Consensus 378 g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~-el~~ak~~~~~~~~~~~~ 432 (505)
..|.+.+.|=.+++.++++.+.+.+.+. .+++. .+.....+.+..+.....
T Consensus 160 ~~l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~~~~i~ 211 (248)
T PF08367_consen 160 PYLVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDMESSII 211 (248)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHHhhh
Confidence 5677888888999999999888877654 36665 455555555555544443
No 34
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=51.64 E-value=38 Score=33.40 Aligned_cols=169 Identities=19% Similarity=0.235 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCCCC-------C-CCCCCCCcccHHHHHHHhhcC----CeEEEEEeecccCC------cceeEE-EEEe
Q 010650 326 ILTVLQVLMGGGGSF-------S-AGGPGKGMHTRLYLRVLNEYQ----QIQSFSAFNSIFNN------TGLFGI-YACT 386 (505)
Q Consensus 326 ~~~vl~~lL~~~~s~-------~-~~~pg~g~~s~L~~~lR~~~g----~~Y~~~a~~~~~~~------~g~~~i-~~~~ 386 (505)
.+.++..=..|-.|| | |||-|.||.+.|.++|++.+. ..|+|........+ ..++.+ +..-
T Consensus 118 ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~ 197 (448)
T KOG1374|consen 118 IMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTE 197 (448)
T ss_pred HHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhh
Confidence 444555545555555 3 899999999999999999876 36766443311111 011111 0000
Q ss_pred Ccc----hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHH-----------hCC-
Q 010650 387 GSD----FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILT-----------YGE- 450 (505)
Q Consensus 387 ~p~----~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~-----------~~~- 450 (505)
+++ .-..++..+....-++ . .+|=..+........+.-...+..+++....+..-+.. .+.
T Consensus 198 nsD~vVVlDN~AL~ria~~~l~i--~-~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~t 274 (448)
T KOG1374|consen 198 NSDCVVVLDNTALHRIAADRLHI--Q-NPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYT 274 (448)
T ss_pred CCCeEEEeccHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCC
Confidence 111 0111222232222222 2 37878888777777777666666676655444422210 011
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcC-CCCCCCHHHHH
Q 010650 451 RKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGD-VINVPGYESVS 499 (505)
Q Consensus 451 ~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~-~~~~p~~~~~~ 499 (505)
|.. .+..... ++++.-+-++.+++|..+-.++..++ ....|.+-.+.
T Consensus 275 P~~-sd~~~~~-~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~si~ 322 (448)
T KOG1374|consen 275 PLT-SDNSLAT-AVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYISIL 322 (448)
T ss_pred ccc-Chhhhhh-hhhcchHHHHHHHHhCcchhhhhccccccCCcchHhHH
Confidence 111 1111222 57777788888899985555555554 55566655443
No 35
>COG5023 Tubulin [Cytoskeleton]
Probab=37.95 E-value=4.2e+02 Score=26.46 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=74.6
Q ss_pred CCCCCCCcccHHHHHHHhhcCC----eEEEEEee-------cccCCcceeEEEEEeCcchHHHH----HHHHHHHHH-Hh
Q 010650 342 AGGPGKGMHTRLYLRVLNEYQQ----IQSFSAFN-------SIFNNTGLFGIYACTGSDFVSKA----VDLVVRELI-LI 405 (505)
Q Consensus 342 ~~~pg~g~~s~L~~~lR~~~g~----~Y~~~a~~-------~~~~~~g~~~i~~~~~p~~~~~~----~~~~~~~l~-~~ 405 (505)
+||-|.||.+.|..+||++++. .|+|.... .+|+ ..+.++...+ +.+.. -+++.+... .+
T Consensus 140 gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYN--svLt~h~l~e--nsD~tf~~DNeal~di~~~~L 215 (443)
T COG5023 140 GGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYN--SVLTLHRLLE--NSDCTFVVDNEALYDICRRNL 215 (443)
T ss_pred cCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccH--HHHHHHHHHh--cCCceEEechHHHHHHHHHhc
Confidence 6899999999999999999873 56554311 0111 1111111000 00000 022223333 33
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCC------------HHHHHHHHccCCHHHHHHHH
Q 010650 406 ATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKS------------VDQFLSVLEHITLDDITNIA 473 (505)
Q Consensus 406 ~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~vT~~di~~~a 473 (505)
..+ .++=+++++.+..+.+.....+.-+++...++..... .-.|.+ ........++.|..|| .
T Consensus 216 ~i~-~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~-nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~ev---t 290 (443)
T COG5023 216 RIQ-NPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQT-NLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEV---T 290 (443)
T ss_pred CCC-CCChHHHHHHHHHHHHhhhheeecCccccchHHHHHh-cCCCCCcccccccccCcccchhhHHHhcccHHHH---H
Confidence 333 4899999999999999999888888877655543332 211111 1223455666766655 5
Q ss_pred HHHhcCCcEEEEE
Q 010650 474 QKIISSPLTMASY 486 (505)
Q Consensus 474 ~~~l~~~~~~~v~ 486 (505)
+++|..+-.++..
T Consensus 291 ~~~f~p~N~mv~~ 303 (443)
T COG5023 291 NQLFDPKNQMVSC 303 (443)
T ss_pred HHHhCcccceeee
Confidence 5666633333333
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=29.67 E-value=2.6e+02 Score=21.40 Aligned_cols=76 Identities=7% Similarity=0.160 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHhh-CCC---CCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCC-cCCHHHHHHHHccC
Q 010650 390 FVSKAVDLVVRELILIA-TPK---QVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGE-RKSVDQFLSVLEHI 464 (505)
Q Consensus 390 ~~~~~~~~~~~~l~~~~-~~g---~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v 464 (505)
..++++..+...++... .+| .++.+||...-......+.....++..+- .+...+=..+. ..+.+++...+..+
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~-~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLD-RMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHH-HHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35667777788887733 323 49999998887776655554333333333 34433211222 23567787777665
Q ss_pred CH
Q 010650 465 TL 466 (505)
Q Consensus 465 T~ 466 (505)
+.
T Consensus 82 ~~ 83 (89)
T cd05023 82 AV 83 (89)
T ss_pred HH
Confidence 43
No 37
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=29.63 E-value=64 Score=28.28 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=34.0
Q ss_pred hhhhcCCCHHHHHHHHHhhc-CCCCeEEEEcC-CCHHhHHHHHHh
Q 010650 232 ESALNRLDGTILEEIVAENF-TAPRMVLAASG-VDLDELLPIAEP 274 (505)
Q Consensus 232 ~~~l~~lt~~~l~~f~~~~~-~~~~~~l~i~G-~~~~~~~~~i~~ 274 (505)
.-.+++.+.+++++..+..- ...++.+.++| ++.+.+.++++.
T Consensus 103 ~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 103 IIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 35678899999999998543 35569999999 999999988754
No 38
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=28.23 E-value=4e+02 Score=26.65 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=31.5
Q ss_pred CCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcchHHHHH
Q 010650 345 PGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAV 395 (505)
Q Consensus 345 pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~ 395 (505)
-|.|+...+-.+||+-..++..|.+|.... ...+....+|-+-.+.+
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~d----i~hv~~~vDP~~DIe~I 129 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTD----IEHVEGKVDPVEDIEII 129 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCc----ccCCCCCcCcHHHHHHH
Confidence 466788999999999988888887764332 23333346776554443
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=28.07 E-value=2.8e+02 Score=21.29 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHHHHHhhC---CC-CCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCC-cCCHHHHHHHHc
Q 010650 388 SDFVSKAVDLVVRELILIAT---PK-QVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGE-RKSVDQFLSVLE 462 (505)
Q Consensus 388 p~~~~~~~~~~~~~l~~~~~---~g-~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 462 (505)
|-..++++..+.+.+..... +| .++.+||..+-............+.. ....+...+=..+. ..+.+++...+.
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~-~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPM-LVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHH-HHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 44577788888888887772 24 38999998876554333222222333 33344444322222 245677777666
Q ss_pred cCC
Q 010650 463 HIT 465 (505)
Q Consensus 463 ~vT 465 (505)
.++
T Consensus 81 ~l~ 83 (93)
T cd05026 81 ALT 83 (93)
T ss_pred HHH
Confidence 553
No 40
>PRK06851 hypothetical protein; Provisional
Probab=27.90 E-value=56 Score=32.64 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=16.5
Q ss_pred CCCCCCCcccHHHHHHHhhc-CCeEEEEEeec
Q 010650 342 AGGPGKGMHTRLYLRVLNEY-QQIQSFSAFNS 372 (505)
Q Consensus 342 ~~~pg~g~~s~L~~~lR~~~-g~~Y~~~a~~~ 372 (505)
+||||.|-.. |.+.+.+.. ...|.|..+..
T Consensus 36 ~G~pGtGKSt-l~~~i~~~~~~~g~~Ve~~~~ 66 (367)
T PRK06851 36 KGGPGTGKST-LMKKIGEEFLEKGYDVEFLHC 66 (367)
T ss_pred ECCCCCCHHH-HHHHHHHHHHHcCCeEEEEEc
Confidence 6789988644 334544433 23466655443
No 41
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=27.19 E-value=2.2e+02 Score=21.43 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 010650 395 VDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM 429 (505)
Q Consensus 395 ~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~ 429 (505)
+..-+.++......|++|++++++....+...+..
T Consensus 33 i~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 33 IRRELAELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34444555555666789999999999988776543
No 42
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=26.76 E-value=2.9e+02 Score=21.01 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHH
Q 010650 392 SKAVDLVVRELILIATP-KQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDIT 470 (505)
Q Consensus 392 ~~~~~~~~~~l~~~~~~-g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~ 470 (505)
..+.+.+-...+.+... | +++.++++++...-.. +......+-..|... ..+....+....+++.++...|+.
T Consensus 6 ~~ia~~LG~~Wk~lar~LG-lse~~Id~Ie~~~~~d----l~eq~~~mL~~W~~~-~~~~~atv~~L~~AL~~~gr~dla 79 (86)
T cd08779 6 LSIAGRLGLDWQAIGLHLG-LSYRELQRIKYNNRDD----LDEQIFDMLFSWAQR-QAGDPDAVGKLVTALEESGRQDLA 79 (86)
T ss_pred HHHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHCccC----HHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHcCHHHHH
Confidence 33444444455554443 5 9999999988753211 111122222223222 123334467888999999999998
Q ss_pred HHHHHH
Q 010650 471 NIAQKI 476 (505)
Q Consensus 471 ~~a~~~ 476 (505)
+-.+..
T Consensus 80 e~l~~~ 85 (86)
T cd08779 80 DEVRAV 85 (86)
T ss_pred HHHHhh
Confidence 877654
No 43
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=26.60 E-value=1.6e+02 Score=20.29 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCeeeeee-ccceeEEEeecccccHHHHHHHHHHhhh
Q 010650 136 RIVREVEAIGGSILASA-SREQMGYSFDALKTYVPEMVELLVDCVR 180 (505)
Q Consensus 136 ~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ll~~~~~ 180 (505)
++.+.+...|.++..-. +.....+++....++.+.+++.|++.+.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 45566778888775443 2244788888888999999999988775
No 44
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=26.46 E-value=2.9e+02 Score=20.92 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHH-HhCCcCCHHHHHHHHccCCHHHHHHHH
Q 010650 400 RELILIAT-PKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQIL-TYGERKSVDQFLSVLEHITLDDITNIA 473 (505)
Q Consensus 400 ~~l~~~~~-~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vT~~di~~~a 473 (505)
..+++++. -| +++.++++++..- .++.......+...+. ..|...........+.++...||...+
T Consensus 16 ~dWk~LAr~Lg-~se~dI~~i~~~~-------~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~r~Div~~~ 83 (84)
T cd08804 16 FSWTELARELD-FTEEQIHQIRIEN-------PNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKINRMDIVHLM 83 (84)
T ss_pred hhHHHHHHHcC-CCHHHHHHHHHHC-------cccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcChHHHHHHh
Confidence 33444433 26 9999999988742 2222222223322322 234445567788999999999998765
No 45
>PRK11032 hypothetical protein; Provisional
Probab=25.08 E-value=1.5e+02 Score=25.67 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHc
Q 010650 391 VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN 430 (505)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~ 430 (505)
+.++++...+.+... |++|++|++.++..++.++..-
T Consensus 26 l~~~ve~a~~~~~~~---~elT~dEl~lv~~ylkRDL~ef 62 (160)
T PRK11032 26 IDALVESARKRVDAA---GELTRDEVDLITRAVRRDLEEF 62 (160)
T ss_pred HHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHH
Confidence 555566665555443 2599999999999998887553
No 46
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=23.59 E-value=2.3e+02 Score=18.87 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhh
Q 010650 135 LRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCV 179 (505)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~ 179 (505)
..+.+.++..++.+.-..-.+...+.+..+.+..+.+.+.|.+..
T Consensus 9 ~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 9 GKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp HHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 457788899999887777777799999999999999999988764
No 47
>COG3462 Predicted membrane protein [Function unknown]
Probab=23.32 E-value=1.2e+02 Score=24.05 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=16.1
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHH
Q 010650 402 LILIATPKQVTQVQLNRAKEATK 424 (505)
Q Consensus 402 l~~~~~~g~~t~~el~~ak~~~~ 424 (505)
+++-...|++|+||..+.++.+.
T Consensus 94 lkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 94 LKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred HHHHHhcCCCCHHHHHHHHHHhc
Confidence 33333446899999999887653
No 48
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.21 E-value=2.1e+02 Score=19.69 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeeeeeec-cceeEEEeecccccHHHHHHHHHHhhhC
Q 010650 136 RIVREVEAIGGSILASAS-REQMGYSFDALKTYVPEMVELLVDCVRN 181 (505)
Q Consensus 136 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~~~~ 181 (505)
++...+...|.++..-.. .....+++....++.+.+++.+++.+.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 455566777777654432 2347788888889999999999887753
No 49
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.60 E-value=2.1e+02 Score=19.39 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhh
Q 010650 136 RIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCV 179 (505)
Q Consensus 136 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~ 179 (505)
++...+...++++...... ...+++....++.+.+++.++..|
T Consensus 19 ~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 19 KMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 4666777888887776643 477778888888999988888765
No 50
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.01 E-value=2.8e+02 Score=23.60 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChH
Q 010650 388 SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRV 435 (505)
Q Consensus 388 p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~ 435 (505)
+..+.++++...+.+... |++|++|++.++..++.++..-.++..
T Consensus 13 ~~~L~~~le~a~e~~~~~---~elT~eEl~lv~~ylkRDl~~~a~~~~ 57 (146)
T PF07295_consen 13 EEELQEALEKAKEYLVAA---GELTREELALVSAYLKRDLEEFARYYE 57 (146)
T ss_pred HHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655444 359999999999999988765544433
No 51
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.09 E-value=2.3e+02 Score=19.14 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhh
Q 010650 136 RIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCV 179 (505)
Q Consensus 136 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~ 179 (505)
++...+...++++...... ...+++....++.+.++..++..+
T Consensus 19 ~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 19 KMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 4666777888877776543 466778888888999888888765
No 52
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.94 E-value=1.9e+02 Score=27.58 Aligned_cols=44 Identities=30% Similarity=0.276 Sum_probs=37.8
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHh
Q 010650 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEP 274 (505)
Q Consensus 231 ~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~ 274 (505)
+.-.|++++.+++++..+..-.+.++.+-++| ++.+.+...++.
T Consensus 210 DiImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 210 DIIMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred CEEEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 45678999999999999987567799999999 999999887754
No 53
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=20.60 E-value=5.6e+02 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=12.2
Q ss_pred cCCHHHHHHHHHHHhc
Q 010650 463 HITLDDITNIAQKIIS 478 (505)
Q Consensus 463 ~vT~~di~~~a~~~l~ 478 (505)
.||++||.+...+|+.
T Consensus 116 ~VT~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 116 VVTPEQIEAAVEKYIE 131 (164)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHH
Confidence 5899999999999987
No 54
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=20.32 E-value=85 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=12.8
Q ss_pred HHccCCHHHHHHHHHHHh
Q 010650 460 VLEHITLDDITNIAQKII 477 (505)
Q Consensus 460 ~i~~vT~~di~~~a~~~l 477 (505)
.|.+||+.||+++.++++
T Consensus 41 ~i~~It~~~i~~~~~~l~ 58 (58)
T PF14659_consen 41 KIKDITPRDIQNFINELL 58 (58)
T ss_dssp BGGG--HHHHHHHHHHH-
T ss_pred cHHHCCHHHHHHHHHHcC
Confidence 388899999999988764
Done!