Query 010650
Match_columns 505
No_of_seqs 247 out of 1451
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:21:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 5.8E-64 2E-68 520.5 52.8 427 74-503 4-451 (475)
2 1hr6_B Beta-MPP, mitochondrial 100.0 5.3E-59 1.8E-63 479.1 51.2 427 72-503 3-442 (443)
3 3hdi_A Processing protease; CA 100.0 3.3E-59 1.1E-63 477.5 49.2 406 76-496 2-411 (421)
4 3eoq_A Putative zinc protease; 100.0 3.9E-59 1.3E-63 474.6 47.9 398 76-490 2-405 (406)
5 1pp9_A Ubiquinol-cytochrome C 100.0 1E-58 3.4E-63 477.5 49.3 423 74-503 12-442 (446)
6 1pp9_B Ubiquinol-cytochrome C 100.0 2.5E-57 8.6E-62 466.0 52.9 421 71-498 19-439 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 3.7E-56 1.3E-60 458.2 45.4 414 74-499 5-432 (445)
8 3gwb_A Peptidase M16 inactive 100.0 2.4E-55 8.2E-60 450.6 44.7 408 74-496 12-428 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 1.7E-54 5.7E-59 443.8 45.0 412 77-503 2-427 (431)
10 3amj_B Zinc peptidase inactive 100.0 6.4E-54 2.2E-58 438.7 44.2 405 74-494 2-419 (424)
11 3d3y_A Uncharacterized protein 100.0 1.7E-48 6E-53 398.3 43.8 391 79-490 6-423 (425)
12 3go9_A Insulinase family prote 100.0 4.2E-48 1.4E-52 402.0 39.3 405 74-503 24-462 (492)
13 1q2l_A Protease III; hydrolase 100.0 1.3E-46 4.6E-51 421.5 39.9 405 72-491 17-441 (939)
14 3cww_A Insulysin, insulin-degr 100.0 1.2E-43 4.1E-48 399.6 37.3 402 72-489 31-455 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 2.1E-43 7.2E-48 397.6 33.7 399 74-491 36-486 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 2.3E-41 8E-46 377.2 37.3 402 72-488 83-586 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 6.3E-42 2.1E-46 341.1 29.1 347 85-498 1-352 (352)
18 1q2l_A Protease III; hydrolase 100.0 9E-36 3.1E-40 333.8 35.5 411 53-490 474-907 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 1.9E-35 6.4E-40 332.8 29.0 393 74-495 552-981 (995)
20 3cww_A Insulysin, insulin-degr 100.0 4.4E-33 1.5E-37 313.6 36.4 413 54-492 493-936 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 1.4E-30 4.7E-35 290.7 23.3 381 82-490 724-1174(1193)
22 3ih6_A Putative zinc protease; 99.9 2.5E-23 8.7E-28 188.9 21.0 176 299-490 18-195 (197)
23 3ih6_A Putative zinc protease; 98.3 2.6E-05 9E-10 69.5 15.7 161 94-262 22-192 (197)
24 3amj_B Zinc peptidase inactive 98.0 0.00017 5.8E-09 72.3 16.8 173 303-490 23-199 (424)
25 3hdi_A Processing protease; CA 97.9 6.1E-05 2.1E-09 75.7 11.7 168 303-490 21-193 (421)
26 3cx5_A Cytochrome B-C1 complex 97.9 0.00046 1.6E-08 69.3 18.1 166 303-490 20-189 (431)
27 3d3y_A Uncharacterized protein 97.8 0.0004 1.4E-08 69.5 16.7 175 303-490 22-210 (425)
28 3cx5_B Cytochrome B-C1 complex 97.8 0.0005 1.7E-08 67.1 16.6 165 303-489 10-176 (352)
29 3eoq_A Putative zinc protease; 97.8 0.00026 8.9E-09 70.6 14.9 159 95-262 234-402 (406)
30 1pp9_A Ubiquinol-cytochrome C 97.8 0.00066 2.2E-08 68.6 17.7 169 302-490 31-204 (446)
31 3gwb_A Peptidase M16 inactive 97.8 0.00021 7.1E-09 71.9 13.7 167 303-490 33-206 (434)
32 1hr6_B Beta-MPP, mitochondrial 97.8 0.0011 3.7E-08 66.8 18.6 167 92-262 242-426 (443)
33 1pp9_B Ubiquinol-cytochrome C 97.8 0.00067 2.3E-08 68.3 16.8 167 302-488 41-211 (439)
34 1hr6_A Alpha-MPP, mitochondria 97.7 0.00096 3.3E-08 68.1 16.6 169 302-489 23-194 (475)
35 3ami_A Zinc peptidase; alpha/b 97.6 0.00098 3.4E-08 67.3 16.1 168 303-490 26-199 (445)
36 3go9_A Insulinase family prote 96.4 0.04 1.4E-06 56.3 14.2 162 91-262 261-445 (492)
37 1g6u_A Domain swapped dimer; d 28.8 86 0.0029 18.8 3.7 26 396-422 3-28 (48)
38 2l4w_A Uncharacterized protein 25.0 85 0.0029 23.8 4.0 44 219-262 61-104 (120)
39 3ov5_A VIRB7 (XAC2622), unchar 24.3 71 0.0024 22.8 3.3 44 219-262 31-74 (85)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=5.8e-64 Score=520.48 Aligned_cols=427 Identities=31% Similarity=0.524 Sum_probs=394.6
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeec
Q 010650 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~ 153 (505)
|.++.++|+||++|++.+.+.+.+++++++++|+++|++...|++||++||+|+||++++..++.+.++..|+.++++|+
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999988877899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCCh
Q 010650 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (505)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (505)
++++.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|+++..++|...+.+.++..+| +++|+++.+|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999889999999999999999 999999999999
Q ss_pred hhhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCC-CCCCCccCCCceEec------CCCCc
Q 010650 233 SALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPP-TEPKSVYIGGDYRQQ------ADSPE 305 (505)
Q Consensus 233 ~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~------~~~~~ 305 (505)
+.|++++.++|++||+++|+|+||+++|+|++++++.++++++|+.||....+ ..+.+.+.++..++. .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865543 212334444444444 46788
Q ss_pred eEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEE
Q 010650 306 THIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYAC 385 (505)
Q Consensus 306 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~ 385 (505)
+++.++|++++ .++++..++.||+.||+++++||||||||||.++||++||++.|++|+++++...+.+.|.|.+++.
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999775 5778999999999999999999999999999999999999999999999998887778899999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHc
Q 010650 386 TGSDFVSKAVDLVVRELILIAT---PKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLE 462 (505)
Q Consensus 386 ~~p~~~~~~~~~~~~~l~~~~~---~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 462 (505)
++|++..++++.+.+++.++.+ .| +|++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 400 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIE 400 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999987 66 9999999999999999999999999999999987766787767888999999
Q ss_pred cCCHHHHHHHHHHHhcC----------CcEEEEEcCCCCCCCHHHHHhHhh
Q 010650 463 HITLDDITNIAQKIISS----------PLTMASYGDVINVPGYESVSSKFH 503 (505)
Q Consensus 463 ~vT~~di~~~a~~~l~~----------~~~~~v~G~~~~~p~~~~~~~~~~ 503 (505)
+||++||++++++|+.. +++++++|+...+|+++++.+.+.
T Consensus 401 ~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 401 DLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp TCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 99999999999999975 799999999999999999998875
No 2
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=5.3e-59 Score=479.13 Aligned_cols=427 Identities=28% Similarity=0.459 Sum_probs=385.4
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeee
Q 010650 72 EPGKVKVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILA 150 (505)
Q Consensus 72 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~ 150 (505)
..|.++.++|+||++|++.+++.+ .+++.+++++|+++|+++..|++|+++||+|+||++++..++.+.++.+|+++++
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 346789999999999998777765 9999999999999999899999999999999999999999999999999999999
Q ss_pred eeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCC
Q 010650 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (505)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 229 (505)
+|+.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+| ++||+++..
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTIL 162 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999889
Q ss_pred CChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC------CCccCCCceEe-cC
Q 010650 230 APESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP------KSVYIGGDYRQ-QA 301 (505)
Q Consensus 230 ~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~------~~~~~~~~~~~-~~ 301 (505)
|+.+.|++++.++|++||+++|.|+|++++++| ++++++.++++++|+.||....+... .+.+.++...+ ..
T Consensus 163 g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T 1hr6_B 163 GPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKEN 242 (443)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECT
T ss_pred CCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccC
Confidence 999999999999999999999999999999999 99999999999999999865433211 22233333333 34
Q ss_pred CCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeE
Q 010650 302 DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~ 381 (505)
+.+++++.++|+.+. +++++..++.|++.+|+++. ...|+|+|+.++||+.||++.|++|+++++...+.+.|.|.
T Consensus 243 ~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 243 TLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp TCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 578999999999986 58899999999999998743 23457888999999999999999999998877777889999
Q ss_pred EEEEeC--cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHH
Q 010650 382 IYACTG--SDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLS 459 (505)
Q Consensus 382 i~~~~~--p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (505)
+++.++ |++..++++.+.++++++.+.| +|++||+++|+.++.++...++++..++..++.+++.+|.+.+.+++.+
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 397 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFE 397 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 999999 9999999999999999999877 9999999999999999999999999999988887655777767888999
Q ss_pred HHccCCHHHHHHHHHHHhc-CCcEEEEEcCCCCCCCHHHHHhHhh
Q 010650 460 VLEHITLDDITNIAQKIIS-SPLTMASYGDVINVPGYESVSSKFH 503 (505)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~~~~~~~ 503 (505)
.|++||++||++++++|+. ++.+++++||...+|.+++|..+++
T Consensus 398 ~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 398 QVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 9999999999999999998 7899999999999999999988764
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=3.3e-59 Score=477.48 Aligned_cols=406 Identities=24% Similarity=0.401 Sum_probs=374.4
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeecc
Q 010650 76 VKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (505)
Q Consensus 76 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~ 154 (505)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++||++||+|+||++++..++.+.++..|+.++++|+.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999976655 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCChh
Q 010650 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (505)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (505)
+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.+...+| ++||+++..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC-CCccCCCceEecCCCCceEEEEE
Q 010650 234 ALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP-KSVYIGGDYRQQADSPETHIALA 311 (505)
Q Consensus 234 ~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 311 (505)
.|++++.++|++||+++|.|+|++++|+| ++ +++.++++++|+.||....+... .+.+.+.......+.+++++.++
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~ 240 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLG 240 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEE
Confidence 99999999999999999999999999999 99 99999999999999876544322 23333334445567889999999
Q ss_pred EeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcchH
Q 010650 312 FEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFV 391 (505)
Q Consensus 312 ~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~ 391 (505)
|+.+. .++++.+++.|++.+|+|+ +.++||++||++.|++|+++++...+.+.|.|.+++.++|++.
T Consensus 241 ~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (421)
T 3hdi_A 241 YPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQL 307 (421)
T ss_dssp EECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGH
T ss_pred EecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHH
Confidence 99886 6889999999999999976 4599999999999999999998887888999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHH
Q 010650 392 SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITN 471 (505)
Q Consensus 392 ~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~~ 471 (505)
.++++.+.++++++++.| +|++||+++|+.++.++...++++..++..++...+..+...+.+++.+.|++||++||++
T Consensus 308 ~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (421)
T 3hdi_A 308 DDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSR 386 (421)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHH
Confidence 999999999999999988 9999999999999999999999999999988877766777778899999999999999999
Q ss_pred HHHHHhcCCcEEEEEcCCCCCCCHH
Q 010650 472 IAQKIISSPLTMASYGDVINVPGYE 496 (505)
Q Consensus 472 ~a~~~l~~~~~~~v~G~~~~~p~~~ 496 (505)
+|++|+.++.+++++||...+|.++
T Consensus 387 ~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 387 LAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp HHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred HHHHHcccCcEEEEECchhcCcchh
Confidence 9999997779999999999999864
No 4
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=3.9e-59 Score=474.65 Aligned_cols=398 Identities=19% Similarity=0.236 Sum_probs=366.4
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeecc
Q 010650 76 VKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR 154 (505)
Q Consensus 76 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~ 154 (505)
++.++|+||++|++.+++ .+.+++.+++++|+++|+++..|++||++||+|+||++++..++.+.++..|+.+|++|++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 578999999999976666 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCChh
Q 010650 155 EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (505)
Q Consensus 155 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (505)
+++.|++++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.++..+| +|||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred hhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCCC-CccCCCceEecCCC-CceEEEE
Q 010650 234 ALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-SVYIGGDYRQQADS-PETHIAL 310 (505)
Q Consensus 234 ~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~ 310 (505)
.|++++.++|++||+++|.|+|++++++| ++++++.++++++|+.||..+.+.... ....++...+..+. +++++.+
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 240 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVA 240 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEE
Confidence 99999999999999999999999999999 999999999999999998654432211 12233344455666 8999999
Q ss_pred EEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcch
Q 010650 311 AFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDF 390 (505)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~ 390 (505)
+|+.+. .++++..++.|++.+|||+ ++++||++||+ .|++|+++++...+.+.|.|.+++.++|++
T Consensus 241 ~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (406)
T 3eoq_A 241 LFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPAR 306 (406)
T ss_dssp EEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred EecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcch
Confidence 999987 6788999999999999986 44999999999 899999999888888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHH
Q 010650 391 VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDIT 470 (505)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~ 470 (505)
..++++.+.++++++.++| +|++||+++|+.++.++...++++..++..++.+.+.++.+.+.+++.+.|++||++||+
T Consensus 307 ~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 307 KGEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHH
Confidence 9999999999999999888 999999999999999999999999999999998888778888899999999999999999
Q ss_pred HHHHHHhc-CCcEEEEEcCCC
Q 010650 471 NIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 471 ~~a~~~l~-~~~~~~v~G~~~ 490 (505)
++|++|+. ++. ++++||..
T Consensus 386 ~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHhcCcccE-EEEECCCC
Confidence 99999999 555 99999864
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1e-58 Score=477.47 Aligned_cols=423 Identities=28% Similarity=0.463 Sum_probs=383.6
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeec
Q 010650 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS 153 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~ 153 (505)
+.++.++|+||++|++.+.+.+.+++.+++++|+++|+++..|++|+++||+|+||++++..++.+.++..|+.++++|+
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 46789999999999987777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCCh
Q 010650 154 REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPE 232 (505)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (505)
.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+| +|||+++..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC----CCccCCCceEe-cCCCCce
Q 010650 233 SALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP----KSVYIGGDYRQ-QADSPET 306 (505)
Q Consensus 233 ~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~----~~~~~~~~~~~-~~~~~~~ 306 (505)
+.|++++.++|++||+++|+|+|++++++| ++++++.++++++|+.|+....+..+ .+.+.++...+ ..+.+++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLA 251 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSE
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCccce
Confidence 999999999999999999999999999999 99999999999999999865543211 22233333332 3457899
Q ss_pred EEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEe
Q 010650 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (505)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~ 386 (505)
++.++|+.+. .++++..++.|++.+|+++.+ +.| +|+|++++||+.||+ .|++|+++++...+.+.|.|.+++.+
T Consensus 252 ~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~i~~~~ 326 (446)
T 1pp9_A 252 HVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLGAHFVC 326 (446)
T ss_dssp EEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeEEEEEEEE
Confidence 9999999986 578899999999999987654 444 778899999999996 58899998887767778999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCH
Q 010650 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITL 466 (505)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 466 (505)
+|++..++++.+.++++++.+ | +|++||+++|..++.++...++++..+++.++.+++.+|.+.+.+++.+.|++||+
T Consensus 327 ~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~ 404 (446)
T 1pp9_A 327 DHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDA 404 (446)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCH
Confidence 999999999999999999987 7 99999999999999999999999999998888877557877778889999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEcCCCCCCCHHHHHhHhh
Q 010650 467 DDITNIAQKIIS-SPLTMASYGDVINVPGYESVSSKFH 503 (505)
Q Consensus 467 ~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~~~~~~~ 503 (505)
+||++++++|+. ++.+++++|+...+|.+++++.++.
T Consensus 405 edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 442 (446)
T 1pp9_A 405 RVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMF 442 (446)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHH
Confidence 999999999998 7899999999999999999988764
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=2.5e-57 Score=465.99 Aligned_cols=421 Identities=29% Similarity=0.468 Sum_probs=383.5
Q ss_pred CCCCceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeee
Q 010650 71 VEPGKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILA 150 (505)
Q Consensus 71 ~~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~ 150 (505)
+..+.++.++|+||++|++.++..|.+++.+++++|+.++++...|++|+++||+|+||++++..++.+.++..|+++++
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na 98 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSV 98 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEE
Confidence 34568899999999999976557789999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCC
Q 010650 151 SASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLA 230 (505)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 230 (505)
+++.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|...+.+.++..+|.+||+++..|
T Consensus 99 ~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g 178 (439)
T 1pp9_B 99 TSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178 (439)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSC
T ss_pred EecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999987789998899
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcCCCHHhHHHHHHhhcCCCCCCCCCCCCCCccCCCceEecCCCCceEEEE
Q 010650 231 PESALNRLDGTILEEIVAENFTAPRMVLAASGVDLDELLPIAEPLLSDLPRLPPPTEPKSVYIGGDYRQQADSPETHIAL 310 (505)
Q Consensus 231 ~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 310 (505)
+.+.|++++.++|++||+++|.|+|++++|+|-+++++.++++++|+ ||.........+.+.++...+..+.+++++.+
T Consensus 179 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 257 (439)
T 1pp9_B 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAAL 257 (439)
T ss_dssp CGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEE
T ss_pred CHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEE
Confidence 99999999999999999999999999999999888999999999998 88654332222233444444556778899999
Q ss_pred EEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcch
Q 010650 311 AFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDF 390 (505)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~ 390 (505)
+|+.+. .++++..++.|++.+|+++++|++|| ||.++||++||++.|++|+++++...+.+.|.|.+++.++|++
T Consensus 258 ~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~ 332 (439)
T 1pp9_B 258 VAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS 332 (439)
T ss_dssp EEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGG
T ss_pred EecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHH
Confidence 999886 68899999999999999999999888 7889999999999999999999877677789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHH
Q 010650 391 VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDIT 470 (505)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~ 470 (505)
..++++.+.++++++.+.| +|++||+++|+.++.++....+++..++..++..++.++.+.+.+++.+.|++||++||+
T Consensus 333 ~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 411 (439)
T 1pp9_B 333 AGDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVI 411 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHH
Confidence 9999999999999999877 999999999999999999999999999999998887667777788999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCCCCCCCHHHH
Q 010650 471 NIAQKIISSPLTMASYGDVINVPGYESV 498 (505)
Q Consensus 471 ~~a~~~l~~~~~~~v~G~~~~~p~~~~~ 498 (505)
+++++|+.++.+++++|+...+|.++++
T Consensus 412 ~~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 412 NAAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp HHHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred HHHHHHhcCCceEEEECCcccCCccccC
Confidence 9999999888999999999999998864
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=3.7e-56 Score=458.15 Aligned_cols=414 Identities=20% Similarity=0.256 Sum_probs=363.6
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeee
Q 010650 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~ 152 (505)
++++.++|+||++|++.+++ .+.+.+.+++++|+++|+++..|++|+++||+|+||++++..++.+.++.+|+.++++|
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 57899999999999965544 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHH-hhhCChHHHHHHHHHHhhc-CCCCCCCCCC
Q 010650 153 SREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELG-ELHNNPQGLLLEAIHSTGY-AGALGNPLLA 230 (505)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~-~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 230 (505)
+.+.+.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|++ +..++|...+.+.++..+| +|||+++..|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 6789999999999999999 9999999999
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC--C-CccCCCc-eEecCCCCc
Q 010650 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--K-SVYIGGD-YRQQADSPE 305 (505)
Q Consensus 231 ~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~--~-~~~~~~~-~~~~~~~~~ 305 (505)
+.+.|++++.++|++||+++|.|+||+++|+| ++++++.++++++|++||....+... . +...+.. ..+..+.++
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAEL 244 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECSS
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCCc
Confidence 99999999999999999999999999999999 99999999999999999866433221 1 1222222 234445788
Q ss_pred eEEEEEEeeCCC--CCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecc-cCC-cceeE
Q 010650 306 THIALAFEVPGG--WLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI-FNN-TGLFG 381 (505)
Q Consensus 306 ~~v~~~~~~~~~--~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~-~~~-~g~~~ 381 (505)
+++.++|+++.. +.+.++..++.+++.||+++ +.+||++.||++.|++|+++++... ..+ .|.|.
T Consensus 245 ~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~ 313 (445)
T 3ami_A 245 PYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFI 313 (445)
T ss_dssp CEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEE
T ss_pred cEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCeEE
Confidence 999999998851 32378999999999999976 4499999999999999999988764 446 89999
Q ss_pred EEEEeCcch-HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHH
Q 010650 382 IYACTGSDF-VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSV 460 (505)
Q Consensus 382 i~~~~~p~~-~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (505)
+++.+.|+. ..++++.+.++++++.+.| ++++||+++|+.++.++....+++..|+..++.+++.++......++.+.
T Consensus 314 i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 392 (445)
T 3ami_A 314 LEGVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQ 392 (445)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999999885 8999999999999999888 99999999999999999999999999999999888644455567889999
Q ss_pred HccCCHHHHHHHHHHHhc-CCcEEEEEcCCCCCCCHHHHH
Q 010650 461 LEHITLDDITNIAQKIIS-SPLTMASYGDVINVPGYESVS 499 (505)
Q Consensus 461 i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~~~ 499 (505)
|++||++||++++++|+. ++.+++++||...+|..++=.
T Consensus 393 i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~ 432 (445)
T 3ami_A 393 LRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQNE 432 (445)
T ss_dssp HHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC--------
T ss_pred HHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCccccccC
Confidence 999999999999999998 789999999988888766433
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=2.4e-55 Score=450.57 Aligned_cols=408 Identities=16% Similarity=0.184 Sum_probs=366.1
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeee
Q 010650 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASA 152 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~ 152 (505)
++++.++|+||++|++.+++ .|.+++.+++++|+.++ ++..|++|+++||+|+||++++..++.+.++..|+++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t 90 (434)
T 3gwb_A 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434)
T ss_dssp CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeee
Confidence 57899999999999976655 58999999999999999 78999999999999999999999999999999999999999
Q ss_pred ccceeEEEeeccccc--HHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCC
Q 010650 153 SREQMGYSFDALKTY--VPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLL 229 (505)
Q Consensus 153 ~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 229 (505)
+.+++.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+.+++++..++|...+.+.++..+| +++|+++..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 170 (434)
T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASD 170 (434)
T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTT
T ss_pred cCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999988 99999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCCC--CccCCCceEecCCCCce
Q 010650 230 APESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK--SVYIGGDYRQQADSPET 306 (505)
Q Consensus 230 ~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 306 (505)
|+.+.|++++.++|++||+++|+++|++++|+| ++++++.++++++|+.||..+.+..+. ....++...+..+..++
T Consensus 171 G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (434)
T 3gwb_A 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQT 250 (434)
T ss_dssp CCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSEE
T ss_pred CCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCce
Confidence 999999999999999999999999999999999 999999999999999998764433221 12223344455667899
Q ss_pred EEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEe
Q 010650 307 HIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (505)
Q Consensus 307 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~ 386 (505)
++.++|..+. .++++..++.|++.+|+++ |+.++||++||++.|++|+++++...+.+.|.|.+++.+
T Consensus 251 ~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~ 318 (434)
T 3gwb_A 251 SLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQT 318 (434)
T ss_dssp EEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEE
T ss_pred eEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEec
Confidence 9999999886 6889999999999999974 356999999999999999999998877788999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCc-CCHHHHHHHHccCC
Q 010650 387 GSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER-KSVDQFLSVLEHIT 465 (505)
Q Consensus 387 ~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vT 465 (505)
+|++..++++.+.++++++.++| ++++||+++|+.++.++....+++..|+..++.... .+.+ ...+++.+.|++||
T Consensus 319 ~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vt 396 (434)
T 3gwb_A 319 RAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNLPLSYLEDFMRQSQELT 396 (434)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHCC
T ss_pred chhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHhCC
Confidence 99999999999999999998877 999999999999999999999999999999988765 5544 44788999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEcCCCCCCCHH
Q 010650 466 LDDITNIAQKIIS-SPLTMASYGDVINVPGYE 496 (505)
Q Consensus 466 ~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~ 496 (505)
++||++++++|+. ++.+++++||...-|-++
T Consensus 397 ~~dv~~~a~~~l~~~~~~~~vvg~~~~~~~~~ 428 (434)
T 3gwb_A 397 VEQVKAAMNKHLNVDKMVIVSAGPTVAQKPLE 428 (434)
T ss_dssp HHHHHHHHHHHCCGGGCEEEEEECCCCCCC--
T ss_pred HHHHHHHHHHhcChhhEEEEEEcCccccCcch
Confidence 9999999999999 889999999977655444
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.7e-54 Score=443.83 Aligned_cols=412 Identities=20% Similarity=0.313 Sum_probs=367.9
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeeccc
Q 010650 77 KVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASRE 155 (505)
Q Consensus 77 ~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~ 155 (505)
+.++|+||++|++.+++ .+.+++.+++++|+++|+++..|++|+++||+|+|+.+ +.++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 45789999999976655 57999999999999999999999999999999998743 35788999999999999
Q ss_pred eeEEEeecccccHHHHHHHHHHhhhCCC---CChHHHHHHHHHHHHHHHhhhCCh-HHHHHHHHHHhhc-CCCCCCCCCC
Q 010650 156 QMGYSFDALKTYVPEMVELLVDCVRNPV---FLDWEVNEELRKLKSELGELHNNP-QGLLLEAIHSTGY-AGALGNPLLA 230 (505)
Q Consensus 156 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---f~~~~~~~~k~~~~~e~~~~~~~p-~~~~~~~~~~~~~-~~~~~~~~~~ 230 (505)
++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.+|+++..++| ...+.+.++..+| ++|++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999988999 9999999999999 8999999899
Q ss_pred ChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCCC-CccCCCceEe-cCCCCceE
Q 010650 231 PESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEPK-SVYIGGDYRQ-QADSPETH 307 (505)
Q Consensus 231 ~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 307 (505)
+.+.|++++.++|++||+++|.|+|++++|+| ++++++.++++++|++||....+.... +.+.+....+ ..+.++++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 234 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCCCCCceE
Confidence 99999999999999999999999999999999 999999999999888898654332211 2223333333 33568999
Q ss_pred EEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCC-cccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEe
Q 010650 308 IALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKG-MHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACT 386 (505)
Q Consensus 308 v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g-~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~ 386 (505)
+.++|+.+. .++++..++.+++.||+++ ++||||+| |.++||+.||++ |++|+++++...+.+.|.|.+++.+
T Consensus 235 v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe~-gl~y~v~~~~~~~~~~g~~~i~~~~ 308 (431)
T 3cx5_A 235 ISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSLSYKDSGLWGFSTAT 308 (431)
T ss_dssp EEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHTT-TCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHhc-CceeeEeEeecccCCCceEEEEEee
Confidence 999999886 6789999999999999965 46889985 789999999975 9999999887767778999999999
Q ss_pred Cc-chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH--cccChHHHHHHHHHHHHHhCCcCCHHHHHHHHcc
Q 010650 387 GS-DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM--NLESRVIVSEDIGRQILTYGERKSVDQFLSVLEH 463 (505)
Q Consensus 387 ~p-~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 463 (505)
+| ++..++++.+.++++++.+ | +|++||+++|+.++.++.. ..+++..++..++..++.+|.+.+.+++.+.|++
T Consensus 309 ~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 386 (431)
T 3cx5_A 309 RNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDA 386 (431)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 99 9999999999999999988 7 9999999999999999999 9999999999998876556777678889999999
Q ss_pred CCHHHHHHHHHHHhc-CCcEEEEEcCCCCCCCHHHHHhHhh
Q 010650 464 ITLDDITNIAQKIIS-SPLTMASYGDVINVPGYESVSSKFH 503 (505)
Q Consensus 464 vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~~~~~~~~~~ 503 (505)
||++||++++++|+. ++.+++++|+...+|.+++|...+.
T Consensus 387 vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 427 (431)
T 3cx5_A 387 ITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMS 427 (431)
T ss_dssp CCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTS
T ss_pred CCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHH
Confidence 999999999999998 7899999999999999999988764
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=6.4e-54 Score=438.66 Aligned_cols=405 Identities=18% Similarity=0.238 Sum_probs=360.4
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCC----CCChHHHHHHHHHcCCee
Q 010650 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTK----NRSHLRIVREVEAIGGSI 148 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~~~~~~l~~~l~~~g~~~ 148 (505)
++++.++|+||++|++.+++ .|.+++.+++++|+.+++++..|++|+++||+|+||+ +++..++.+.++..|+.+
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999976555 6899999999999999999999999999999999999 999999999999999999
Q ss_pred eeeeccceeEEEeecccccH--HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCC
Q 010650 149 LASASREQMGYSFDALKTYV--PEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALG 225 (505)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~ 225 (505)
+++++.+++.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|...+.+.+...+| ++||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999999889999999999999999 89999
Q ss_pred CCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCC-CCCcc-CCCceEecCC
Q 010650 226 NPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-PKSVY-IGGDYRQQAD 302 (505)
Q Consensus 226 ~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~~~ 302 (505)
.+. +.+.|++++.++|++||+++|.|+|++++|+| ++++++.++++++|+.||....+.. +.+.. .+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 876 88999999999999999999999999999999 9999999999999999986543322 11122 2223344556
Q ss_pred CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEE
Q 010650 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i 382 (505)
.+++++.++|+.+. .+.++..++.+++.+|+++ |++++||+.||++.|++|+++++...+.+.|.|.+
T Consensus 240 ~~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i 307 (424)
T 3amj_B 240 ATQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQI 307 (424)
T ss_dssp SSEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEE
T ss_pred CCccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEE
Confidence 68999999999876 5788999999999999974 25699999999999999999998877778899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCc-CCHHHHHHHH
Q 010650 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER-KSVDQFLSVL 461 (505)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~i 461 (505)
++.++|++..++++.+.++++++.+.| +|++||+++|+.++.++....+++..++..++.... ++.+ ...+++.+.|
T Consensus 308 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 385 (424)
T 3amj_B 308 GFETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY-YGLPLDYLDHYTERV 385 (424)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHH-TTCCTTTTTSHHHHH
T ss_pred EEEeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHH-cCCChhHHHHHHHHH
Confidence 999999999999999999999998877 999999999999999999999999999998887665 5554 4467888999
Q ss_pred ccCCHHHHHHHHHHHhc-CCcEEEEEcCCCCCCC
Q 010650 462 EHITLDDITNIAQKIIS-SPLTMASYGDVINVPG 494 (505)
Q Consensus 462 ~~vT~~di~~~a~~~l~-~~~~~~v~G~~~~~p~ 494 (505)
++||++||++++++|+. ++.+++++||...+.+
T Consensus 386 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 386 QAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp HTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 99999999999999998 8899999999876654
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1.7e-48 Score=398.29 Aligned_cols=391 Identities=15% Similarity=0.177 Sum_probs=342.0
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCC-ChHHHHHHHHHc-CCeeeeeeccc
Q 010650 79 TTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNR-SHLRIVREVEAI-GGSILASASRE 155 (505)
Q Consensus 79 ~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~-~~~~l~~~l~~~-g~~~~~~~~~~ 155 (505)
++|+||++|++.+++ .+.+.+.+++++|+.+++ .|++|+++||+++||+++ +..++.+.++.. |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999976664 689999999999997654 699999999999999998 888999999997 99999999998
Q ss_pred e----eEEEeecccc-------cHHHHHHHHHHhhhCCC-----CChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhh
Q 010650 156 Q----MGYSFDALKT-------YVPEMVELLVDCVRNPV-----FLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTG 219 (505)
Q Consensus 156 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~ 219 (505)
+ +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.+++++..++|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 5899999887 69999999999999999 999999999999999999988999999999999999
Q ss_pred c--CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC-C--CccC
Q 010650 220 Y--AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP-K--SVYI 293 (505)
Q Consensus 220 ~--~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~-~--~~~~ 293 (505)
| +|||+++..|+.+.|++++.++|++||+++|.++|++++|+| ++++++.+++ ++|+ ||.......+ . .+..
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999889999999999999999999999999999999999 9999999999 9999 9865432211 1 1111
Q ss_pred CCc-e-EecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEee
Q 010650 294 GGD-Y-RQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFN 371 (505)
Q Consensus 294 ~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~ 371 (505)
... . ....+.+++++.++|+.+.. .++++..++.|++.+|+|+ ++++||++||++.|++|++++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 111 2 23346789999999998633 4788999999999999975 44999999999999999998876
Q ss_pred cccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCc
Q 010650 372 SIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER 451 (505)
Q Consensus 372 ~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 451 (505)
.. ..|.|.+++.++|++..++++.+.++++++++.| +|++||+++|+.++.++....+++..++..++..++.+|.+
T Consensus 309 ~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (425)
T 3d3y_A 309 DT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTM 385 (425)
T ss_dssp ET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSC
T ss_pred cc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCC
Confidence 54 4788999999999999999999999999999887 99999999999999999999999999999998887643766
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcCCC
Q 010650 452 KSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVI 490 (505)
Q Consensus 452 ~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~ 490 (505)
.+.+++.+.|++||++||++++++|+.+ ..++++|+.+
T Consensus 386 ~~~~~~~~~i~~vt~edv~~~a~~~~~~-~~~~v~g~~~ 423 (425)
T 3d3y_A 386 LTAEEWIARINAVTIPEIQEVAKRLELQ-AIFFLEGETE 423 (425)
T ss_dssp CCHHHHHHHHHHCCHHHHHHHHHHCEEE-EEEEEEEECC
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHhccCc-eEEEEeCCCC
Confidence 6788999999999999999999998755 5556777543
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=4.2e-48 Score=401.97 Aligned_cols=405 Identities=14% Similarity=0.101 Sum_probs=330.3
Q ss_pred CceEEEEcCCCcEEEEe-cC--CCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHH----HcCC
Q 010650 74 GKVKVTTLENGIRIASE-TS--VSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVE----AIGG 146 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~-~~--~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~----~~g~ 146 (505)
|.++.++|+||++|++. +. +.|.+++.+++++|+++|+++..|++||++||+|+||++++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999854 32 35799999999999999999999999999999999999999999998766 4789
Q ss_pred eeeeeeccceeEEEeeccc---ccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CC
Q 010650 147 SILASASREQMGYSFDALK---TYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AG 222 (505)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~ 222 (505)
.+|++|+.+++.|.+++++ ++++.+|+++.+++.+|.|++++|+++|..+.+++.....+|....+. ..++ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH---HHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHH---HHhccCC
Confidence 9999999999999999998 679999999999999999999999999988777777777777654432 3344 55
Q ss_pred CCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCC--C-CCccCCC-ce
Q 010650 223 ALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE--P-KSVYIGG-DY 297 (505)
Q Consensus 223 ~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~--~-~~~~~~~-~~ 297 (505)
+++++..+ +.+++++.++|++||+++|+|+|++++|+| ++++++.++++++|+.||.....+. + .++..+. ..
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66665433 568999999999999999999999999999 9999999999999999987653221 1 1122222 23
Q ss_pred EecCCCCceEEEEEEeeCCCCCCChhhHHH------HHHHHhcCCCCCCCCCCCCCCcccHHHHHHHh--hcCCeEEEEE
Q 010650 298 RQQADSPETHIALAFEVPGGWLKDKEAIIL------TVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLN--EYQQIQSFSA 369 (505)
Q Consensus 298 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~--~~g~~Y~~~a 369 (505)
.+..+.+++++.++|..+. ..++|..++ .+++.+|+ ++|+.+||+ +.|++|++++
T Consensus 259 ~~~~~~~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~~s 321 (492)
T 3go9_A 259 LMNEQAAQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGFDC 321 (492)
T ss_dssp EEESSCSSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEEEE
T ss_pred EEcCCCCCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccccccccCc
Confidence 3456688999999999986 455555544 89999998 899999999 8899999998
Q ss_pred eecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHccc-----ChHHHHHHHHHH
Q 010650 370 FNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLE-----SRVIVSEDIGRQ 444 (505)
Q Consensus 370 ~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~-----s~~~~~~~~~~~ 444 (505)
+.....+.+. +++.+++++..++++.+.++++++.+.| +|++||+++|+.+++++...++ ++...++.+.+.
T Consensus 322 ~~~~~~~~~~--~~i~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~ 398 (492)
T 3go9_A 322 RVQYQRAQCA--IHLNTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRS 398 (492)
T ss_dssp EEETTEEEEE--EEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHH
T ss_pred hhhhhhcceE--EEEEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7766555444 4456689999999999999999999888 9999999999999999887755 356677777776
Q ss_pred HHHhCCcCCHHH----HHHHHccCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCC-HHHHHhHhh
Q 010650 445 ILTYGERKSVDQ----FLSVLEHITLDDITNIAQKIISSPLTMASYGDVINVPG-YESVSSKFH 503 (505)
Q Consensus 445 ~~~~~~~~~~~~----~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~~~p~-~~~~~~~~~ 503 (505)
+........+++ +.+.|++||++||++++++|+..+..++++|+...++. .+++.+.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~ 462 (492)
T 3go9_A 399 QQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYN 462 (492)
T ss_dssp HHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHH
T ss_pred HhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHH
Confidence 654433333333 34669999999999999999997788889998877764 667776654
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.3e-46 Score=421.55 Aligned_cols=405 Identities=13% Similarity=0.107 Sum_probs=345.8
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCC-hHHHHHHHHHcCCeee
Q 010650 72 EPGKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRS-HLRIVREVEAIGGSIL 149 (505)
Q Consensus 72 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~-~~~l~~~l~~~g~~~~ 149 (505)
+...++..+|+||++|++.+++ .+.+.+.+++++|+.+|+++..|+||++|||+|+||.+++ ..++.++++.+|+.+|
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 3346889999999999965554 6799999999999999999999999999999999999997 4799999999999999
Q ss_pred eeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCC
Q 010650 150 ASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPL 228 (505)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~ 228 (505)
++|+.+++.|.+++++++++.+|+++.+++.+|.|+++++++++..+.+|++...++|...+.+.+...+| +|||+++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChhhhcC----CCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCC-C-CCccCCC----ce
Q 010650 229 LAPESALNR----LDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTE-P-KSVYIGG----DY 297 (505)
Q Consensus 229 ~~~~~~l~~----lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~-~-~~~~~~~----~~ 297 (505)
.|+.+.|++ ++.++|++||++||.|+||+++|+| ++++++.++++++|++||+...+.. + .+.+... ..
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 9999999999999999987654322 1 1222221 22
Q ss_pred EecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEee--cccC
Q 010650 298 RQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFN--SIFN 375 (505)
Q Consensus 298 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~--~~~~ 375 (505)
....+.+++.+.++|+.|.. ....+..++.+++.+||++++ ++|++.||+ .|++|+++++. ....
T Consensus 257 ~~~~~~~~~~l~i~~~~~~~-~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~ 323 (939)
T 1q2l_A 257 HYVPALPRKVLRVEFRIDNN-SAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNG 323 (939)
T ss_dssp EECCSSCCCEEEEEEEEECC-GGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTS
T ss_pred EEEeCCCCcEEEEEEEcCCh-HHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCC
Confidence 23345678999999999962 223366788999999998644 899999995 69999999874 2345
Q ss_pred CcceeEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcc-cChHHHHHHHHHHHHHhCCc
Q 010650 376 NTGLFGIYACTGS---DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL-ESRVIVSEDIGRQILTYGER 451 (505)
Q Consensus 376 ~~g~~~i~~~~~p---~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~ 451 (505)
+.|.|.+++.+.+ ++..++++.+.++++.+.+.| ++++||+++|+.+..++.... +++...+..++..+. ....
T Consensus 324 ~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 401 (939)
T 1q2l_A 324 NSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPV 401 (939)
T ss_dssp SEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCG
T ss_pred CceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCH
Confidence 6799999999887 488999999999999999888 999999999999999987765 567777778877764 3322
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcCCCC
Q 010650 452 KSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDVIN 491 (505)
Q Consensus 452 ~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~~~ 491 (505)
.........++++|++||+++++++..++.+++++|+...
T Consensus 402 ~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 402 EHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 (939)
T ss_dssp GGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCC
T ss_pred HHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCC
Confidence 3333445679999999999999884348889999998654
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.2e-43 Score=399.60 Aligned_cols=402 Identities=17% Similarity=0.165 Sum_probs=336.7
Q ss_pred CCCceEEEEcCCCcEEEEec-CCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCeee
Q 010650 72 EPGKVKVTTLENGIRIASET-SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSH-LRIVREVEAIGGSIL 149 (505)
Q Consensus 72 ~~~~~~~~~L~NGl~v~~~~-~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~-~~l~~~l~~~g~~~~ 149 (505)
+...++.++|+||++|++.+ ...+.+.+.+++++|+..|+++..|++|++|||+|+||.+++. .++.+.++.+|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 34578999999999999654 4467999999999999999999999999999999999999987 799999999999999
Q ss_pred eeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCC
Q 010650 150 ASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPL 228 (505)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~ 228 (505)
++|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+++.
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999989999999888998899 99999999
Q ss_pred CCChhhhcCC-------CHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCCCCCCC--CCccCC----
Q 010650 229 LAPESALNRL-------DGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLPPPTEP--KSVYIG---- 294 (505)
Q Consensus 229 ~~~~~~l~~l-------t~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~~~~~~--~~~~~~---- 294 (505)
.|+.+.|.++ +.++|++||++||+|+||+++++| ++++++.++++++|+.||....+... .+++..
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 270 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSS
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcC
Confidence 9999999999 999999999999999999999999 99999999999999999876433211 112211
Q ss_pred CceEecCCCCceEEEEEEeeCCCCCC-ChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecc
Q 010650 295 GDYRQQADSPETHIALAFEVPGGWLK-DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSI 373 (505)
Q Consensus 295 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~ 373 (505)
.........+++++.++|..|. .. ..+..++.+++.+|++++ + .+ |+..||+ .|++|+++++...
T Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~lLg~~~------~----~s-l~~~Lr~-~g~~~~~~a~~~~ 336 (990)
T 3cww_A 271 QLYKIVPIKDIRNLYVTFPIPD--LQKYYKSNPGHYLGHLIGHEG------P----GS-LLSELKS-KGWVNTLVGGQKA 336 (990)
T ss_dssp EEEEECCSSSCCEEEEEEEECC--CGGGTTTCHHHHHHHHHTCCS------T----TC-HHHHHHH-TTSCSCEEEEEEE
T ss_pred eEEEEEECCCCcEEEEEEEcCC--hhhhhhhCHHHHHHHHhcCCC------C----Cc-HHHHHHH-CCCcceeeecccc
Confidence 1122233457889999999986 33 456788999999998632 2 15 6679997 5999999887654
Q ss_pred -cCCcceeEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHc-ccChHHHHHHHHHHHHHh
Q 010650 374 -FNNTGLFGIYACTGS---DFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN-LESRVIVSEDIGRQILTY 448 (505)
Q Consensus 374 -~~~~g~~~i~~~~~p---~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~-~~s~~~~~~~~~~~~~~~ 448 (505)
..+.+.|.+++.+.+ ++..++++.+.++++.+.+.| ++++++++++......+... .+++...+..+...+. .
T Consensus 337 ~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 414 (990)
T 3cww_A 337 GARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH-Y 414 (990)
T ss_dssp EETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT-T
T ss_pred CCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh-h
Confidence 445789999999765 489999999999999999888 99999999998877776653 4567777777765542 3
Q ss_pred CCcCCHHHHHHHHccCCHHHHHHHHHHHhcCCcEEEEEcCC
Q 010650 449 GERKSVDQFLSVLEHITLDDITNIAQKIISSPLTMASYGDV 489 (505)
Q Consensus 449 ~~~~~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~v~G~~ 489 (505)
..+.......+.|.++|++||+++++++..++.+++++|+.
T Consensus 415 ~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~ 455 (990)
T 3cww_A 415 YPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKS 455 (990)
T ss_dssp SCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGG
T ss_pred CCHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCC
Confidence 23333334457799999999999999755577788888864
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.1e-43 Score=397.56 Aligned_cols=399 Identities=11% Similarity=0.049 Sum_probs=326.9
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHH-HHHHH-HcCCeeeee
Q 010650 74 GKVKVTTLENGIRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRI-VREVE-AIGGSILAS 151 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l-~~~l~-~~g~~~~~~ 151 (505)
..++..+|+||++|++.+++.... ++.+|++.++++..|++|++|||+|+||.+++..++ .+.++ ..|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999766664322 367788999999999999999999999999998774 44454 468899999
Q ss_pred eccceeEEEeecc-cccHHHHHHHHHHhhhCCCC--ChHHHHHH---------------HHHHHHHHHhhhCChHHHHHH
Q 010650 152 ASREQMGYSFDAL-KTYVPEMVELLVDCVRNPVF--LDWEVNEE---------------LRKLKSELGELHNNPQGLLLE 213 (505)
Q Consensus 152 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f--~~~~~~~~---------------k~~~~~e~~~~~~~p~~~~~~ 213 (505)
|+.|+++|.+.+. .++++.+|+++.+++.+|.| ++++|+++ |..+.+|++...++|...+.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999875 56999999999999999999 99999999 889999999999999999999
Q ss_pred HHHHhhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCC--CCCC--CCC
Q 010650 214 AIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLP--RLPP--PTE 287 (505)
Q Consensus 214 ~~~~~~~-~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~--~~~~--~~~ 287 (505)
.+...+| +|||+++..|+.+.|++++.++|++||++||+|+||+++|+| +|++++.++++++|+.|+ .... ...
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 4321 111
Q ss_pred CCCccCCCc---eEe-----cCCCCceEEEEEEeeCCCCCC--ChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHH
Q 010650 288 PKSVYIGGD---YRQ-----QADSPETHIALAFEVPGGWLK--DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRV 357 (505)
Q Consensus 288 ~~~~~~~~~---~~~-----~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~l 357 (505)
+.+++.... ..+ ..+.+++++.++|..|. .. .++..++.+|+.+|+++ +.++|++.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~vl~~~Lg~~-----------~~S~L~~~l 338 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE--KPLDLQTQLALGFLDHLMLGT-----------PASPLRKIL 338 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS--SCCCHHHHHHHHHHHHHHHSS-----------TTSHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC--CcCCHHHHHHHHHHHHHHcCC-----------CCCHHHHHH
Confidence 122333321 112 22356899999999986 34 58899999999999875 339999999
Q ss_pred HhhcCCeEEEEEe-ecccCCcceeEEE-EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcc--cC
Q 010650 358 LNEYQQIQSFSAF-NSIFNNTGLFGIY-ACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNL--ES 433 (505)
Q Consensus 358 R~~~g~~Y~~~a~-~~~~~~~g~~~i~-~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~--~s 433 (505)
|++ |++|+++++ .......+.|.+. ..+++++..++++.+.++++++.+.| ++++||+++|+.+...+.... ++
T Consensus 339 ~e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~~~~~ 416 (995)
T 2fge_A 339 LES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENNTGSF 416 (995)
T ss_dssp HHT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCTTS
T ss_pred Hhc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhccCCCC
Confidence 986 899999765 4444457889986 46899999999999999999999888 999999999999999887654 23
Q ss_pred hH--HHHHHHHHHHHHhCCcCCHHHHHHHHccCCH----H----HHHHHHHHHhc-C-CcEEEEEcCCCC
Q 010650 434 RV--IVSEDIGRQILTYGERKSVDQFLSVLEHITL----D----DITNIAQKIIS-S-PLTMASYGDVIN 491 (505)
Q Consensus 434 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~----~----di~~~a~~~l~-~-~~~~~v~G~~~~ 491 (505)
+. ..+..++..++.++.+....++.+.++++++ + ||++++++|+. . +.+++++++...
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~ 486 (995)
T 2fge_A 417 PRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPE 486 (995)
T ss_dssp CHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETT
T ss_pred ccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCcc
Confidence 44 3556666666655565554455566676666 8 89999999996 3 456777776543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=2.3e-41 Score=377.20 Aligned_cols=402 Identities=11% Similarity=0.079 Sum_probs=321.3
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHH--cCCee
Q 010650 72 EPGKVKVTTLENGIRIASETSVSP-AASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEA--IGGSI 148 (505)
Q Consensus 72 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~--~g~~~ 148 (505)
..+.+....|+||++|++.+.+.+ .+. ..+.+|++.++++..|++|++|||+|+||++++..++...++. .|+.+
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 445788889999999996554433 222 3455677788999999999999999999999999999999988 88999
Q ss_pred eeeeccceeEEEeeccc-ccHHHHHHHHHHhhhCCCCChHH--HHHH-----------------------------HHHH
Q 010650 149 LASASREQMGYSFDALK-TYVPEMVELLVDCVRNPVFLDWE--VNEE-----------------------------LRKL 196 (505)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~--~~~~-----------------------------k~~~ 196 (505)
|++|+.|+++|.+++.+ ++++.+|+++.+.+.+|.|++++ |.++ |..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999887 89999999999999999998877 7776 5689
Q ss_pred HHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHh
Q 010650 197 KSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEP 274 (505)
Q Consensus 197 ~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~ 274 (505)
.+|++...++|..++.+.+...+| +|||+++..|+++.|.++|.++|++||+++|.|+|++++++| ++++++.+++++
T Consensus 241 ~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~ 320 (1193)
T 3s5m_A 241 YNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320 (1193)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999999 999999999999
Q ss_pred hcCCCCCCCCCC-----C-CCCccCCCc-eEec----CCCCceEEEEEEeeCCC---CCC--------------------
Q 010650 275 LLSDLPRLPPPT-----E-PKSVYIGGD-YRQQ----ADSPETHIALAFEVPGG---WLK-------------------- 320 (505)
Q Consensus 275 ~~~~l~~~~~~~-----~-~~~~~~~~~-~~~~----~~~~~~~v~~~~~~~~~---~~~-------------------- 320 (505)
+|+.|+.++... . ..++..+.. .... .+.+++++.++|..|.. ..+
T Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~ 400 (1193)
T 3s5m_A 321 YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGS 400 (1193)
T ss_dssp HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CC
T ss_pred HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccccc
Confidence 999998654311 1 112222222 2221 34678999999998741 012
Q ss_pred ---------ChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEE-EeecccCCcceeEEEE-EeCcc
Q 010650 321 ---------DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFS-AFNSIFNNTGLFGIYA-CTGSD 389 (505)
Q Consensus 321 ---------~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~-a~~~~~~~~g~~~i~~-~~~p~ 389 (505)
.++..++.||+.||+||.+ ||||+.||+ .|++|+++ +++......+.|.|++ .++++
T Consensus 401 ~~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~ 468 (1193)
T 3s5m_A 401 HSSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRN 468 (1193)
T ss_dssp CCSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTT
T ss_pred ccccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChh
Confidence 4789999999999998644 999999998 59999997 4555555667888887 46654
Q ss_pred h--------H-HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHc-ccChHHH--HHHHHHHHHHhCCcCC---H
Q 010650 390 F--------V-SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMN-LESRVIV--SEDIGRQILTYGERKS---V 454 (505)
Q Consensus 390 ~--------~-~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~-~~s~~~~--~~~~~~~~~~~~~~~~---~ 454 (505)
+ . .++.+.+.++|+++.++| ++++||+++|+++...+... ..++... +..+...+++.|.+.. .
T Consensus 469 ~~~~~~~~~~~~~~~~~I~~~L~~l~~~g-i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~ 547 (1193)
T 3s5m_A 469 NEKIKNFDKVHYEVEDVIMNALKKVVKEG-FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEF 547 (1193)
T ss_dssp CTTCSCGGGHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSH
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 5 689999999999999999 99999999999999888764 3444432 3455556666777765 3
Q ss_pred HHHHHHHccCC---HHHHHHHHHHHhc-CCc-EEEEEcC
Q 010650 455 DQFLSVLEHIT---LDDITNIAQKIIS-SPL-TMASYGD 488 (505)
Q Consensus 455 ~~~~~~i~~vT---~~di~~~a~~~l~-~~~-~~~v~G~ 488 (505)
++..+.+++.+ ++++++++++||. .+. +++++-|
T Consensus 548 ~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P 586 (1193)
T 3s5m_A 548 EKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEG 586 (1193)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEc
Confidence 44445555443 4599999999986 333 4444444
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=6.3e-42 Score=341.10 Aligned_cols=347 Identities=21% Similarity=0.292 Sum_probs=289.9
Q ss_pred cEEEEecCCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecc
Q 010650 85 IRIASETSVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDAL 164 (505)
Q Consensus 85 l~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 164 (505)
+||+.++.+.|.+++.+++++|+++++ ..|++|+++||+|+||++++..++.+.++..|++++++++++++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 688988888999999999999999974 889999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhhCCCCChHHHH-HHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHH
Q 010650 165 KTYVPEMVELLVDCVRNPVFLDWEVN-EELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243 (505)
Q Consensus 165 ~~~l~~~l~ll~~~~~~p~f~~~~~~-~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l 243 (505)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.+|++...++|...+.+.++..+|.+||+++.. .+.|++++.+++
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998764 688999999999
Q ss_pred HHHHHhhcCCCCeEEEEcCCCHHhHHHHH-HhhcCCCCCCCCCCC--CCCccCCCceEecCCCCceEEEEEEeeCCCCCC
Q 010650 244 EEIVAENFTAPRMVLAASGVDLDELLPIA-EPLLSDLPRLPPPTE--PKSVYIGGDYRQQADSPETHIALAFEVPGGWLK 320 (505)
Q Consensus 244 ~~f~~~~~~~~~~~l~i~G~~~~~~~~~i-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 320 (505)
++||+++|.|+|++++++|++++++.+++ +++|++||....... +.+.+.++...+.. ..++.+.++++ .+
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~ 230 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-IGDSVAAIGIP-----VN 230 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-SSSEEEEEEEE-----EC
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-CCCceEEEecC-----CC
Confidence 99999999999999999999999999999 899999986544321 11223333333433 35666666543 35
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeC-cchHHHHHHHHH
Q 010650 321 DKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTG-SDFVSKAVDLVV 399 (505)
Q Consensus 321 ~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~-p~~~~~~~~~~~ 399 (505)
+++.+++.||+.+|+ . +||++.|++ ++++...+.+.|.|.+++.++ ++++.+++ .
T Consensus 231 ~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~~i---~ 286 (352)
T 3cx5_B 231 KASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSSNI---K 286 (352)
T ss_dssp TTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHHHH---H
T ss_pred ChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHHHH---H
Confidence 679999999999998 3 578888876 444444456789999999997 55554444 4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHHccCCHHHHHHHHHHHhcC
Q 010650 400 RELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVLEHITLDDITNIAQKIISS 479 (505)
Q Consensus 400 ~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~~di~~~a~~~l~~ 479 (505)
+++++ | +|++||+++|+.++.++...++++ |.+.+. .|++||.+ + + +
T Consensus 287 ~~l~~----~-~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~~-------~-~-~ 333 (352)
T 3cx5_B 287 KIVAD----L-KKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----NFDAVKDF-------K-L-G 333 (352)
T ss_dssp HHHHH----H-HSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCEE-------C-C-C
T ss_pred HHHHh----c-CCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----eeeeeeHh-------h-c-C
Confidence 44433 4 899999999999999999988873 333322 59999932 2 5 8
Q ss_pred CcEEEEEcCCCCCCCHHHH
Q 010650 480 PLTMASYGDVINVPGYESV 498 (505)
Q Consensus 480 ~~~~~v~G~~~~~p~~~~~ 498 (505)
+++++++||...+|.++++
T Consensus 334 ~~~~~~~G~~~~~~~~~~~ 352 (352)
T 3cx5_B 334 KFNYVAVGDVSNLPYLDEL 352 (352)
T ss_dssp SCEEEEEESGGGSCCGGGC
T ss_pred CceEEEEccccccCccccC
Confidence 9999999999999988753
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=9e-36 Score=333.79 Aligned_cols=411 Identities=10% Similarity=0.047 Sum_probs=321.4
Q ss_pred CCCccCCCCCCCCCCC--C-CCCCCceEEEEcCCCcEEEEecCC---C-CeEEEEEEEeccccCCCCCCCcHHHHHHHhh
Q 010650 53 SLDTPLEGVSFPPSLP--D-FVEPGKVKVTTLENGIRIASETSV---S-PAASIGLYLDFGSVYETPSSCGASNLLEKMA 125 (505)
Q Consensus 53 ~l~~pl~~~~~p~~~~--~-~~~~~~~~~~~L~NGl~v~~~~~~---~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 125 (505)
.+..|-++.++|.+.. + .......+.++|+||++||+++++ . |.+.|.+.+.+|...+++...|+++++..|+
T Consensus 474 ~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll 553 (939)
T 1q2l_A 474 ALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLA 553 (939)
T ss_dssp CCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHH
T ss_pred cccCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4555656666665321 1 111223467899999999987666 2 4999999999999988877889999999999
Q ss_pred ccCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhh-h
Q 010650 126 FKSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGEL-H 204 (505)
Q Consensus 126 ~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~-~ 204 (505)
..|+.. +....+..|.+++++. .+++.+++++.+++++.+|+++.+.+.+|.|++++|+.+|+.++.++++. .
T Consensus 554 ~~g~~~-----~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~ 627 (939)
T 1q2l_A 554 GLALDQ-----LSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEK 627 (939)
T ss_dssp HHHHHH-----HHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH-----HhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 877543 3444556788888888 99999999999999999999999999999999999999999999999997 4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHHHHhhcCCCCCCC
Q 010650 205 NNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPIAEPLLSDLPRLP 283 (505)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~i~~~~~~l~~~~ 283 (505)
++|..++.+.+...+|++ + ++..++.+.|++++.+++++|++++|.+.+++++|+| +++++++++++++++.|+...
T Consensus 628 ~~p~~~a~~~l~~~l~~~-~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~ 705 (939)
T 1q2l_A 628 GKAFEQAIMPAQMLSQVP-Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADG 705 (939)
T ss_dssp SCHHHHHHHHHHHTTSSS-C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCC
T ss_pred cChHHHHHHHHHHHhcCC-C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCC
Confidence 579999999999888733 2 4445678999999999999999999999999999999 999999999999998887543
Q ss_pred CCCCCC--CccCCC-ceE--ecCCCCceEE-EEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHH
Q 010650 284 PPTEPK--SVYIGG-DYR--QQADSPETHI-ALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRV 357 (505)
Q Consensus 284 ~~~~~~--~~~~~~-~~~--~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~l 357 (505)
...... .....+ ... ...+..++.+ .+.|+.+. .+.++.+.+.+|+.++. ++||++|
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~L 768 (939)
T 1q2l_A 706 SEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQL 768 (939)
T ss_dssp SCCCCCEEECCCSCEEEEEEECCSSSCEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHH
T ss_pred ccccccceEEeCCCceEEEecCCCCCCceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 222111 111222 222 2233334444 56665542 34555666666666555 9999999
Q ss_pred HhhcCCeEEEEEeeccc-CCcce-eEEEE-EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccCh
Q 010650 358 LNEYQQIQSFSAFNSIF-NNTGL-FGIYA-CTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR 434 (505)
Q Consensus 358 R~~~g~~Y~~~a~~~~~-~~~g~-~~i~~-~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~ 434 (505)
|++.|++|+|+++.... ...|+ |.|+. .++|+++.++++.+.+++.++.+ | +|++||+++|+.++.++....++.
T Consensus 769 Rek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~ 846 (939)
T 1q2l_A 769 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTL 846 (939)
T ss_dssp HTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSH
T ss_pred HHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999887643 33453 66666 67899999999999999999874 6 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcC-CHHHHHHHHccCCHHHHHHHHHHHhc--CCc--EEEEEcCCC
Q 010650 435 VIVSEDIGRQILTYGERK-SVDQFLSVLEHITLDDITNIAQKIIS--SPL--TMASYGDVI 490 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vT~~di~~~a~~~l~--~~~--~~~v~G~~~ 490 (505)
...+..+|..++..+... ..+++.+.|++||++||++++++++. ... ++.++|+..
T Consensus 847 ~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 847 GEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 998888888887555444 36888999999999999999999976 333 455889864
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.9e-35 Score=332.85 Aligned_cols=393 Identities=12% Similarity=0.014 Sum_probs=309.7
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhcc-CCCCCChHHHHHHHHHcCCeeee-
Q 010650 74 GKVKVTTLENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILA- 150 (505)
Q Consensus 74 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~~~~~l~~~l~~~g~~~~~- 150 (505)
.+++.. +.||++|++++++ .+.+++.+++++|+. +++..+.++++.++++. ||++++..++.+.++...+.+++
T Consensus 552 ~~~~~~-~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEVG-DINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEEE-ESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCceee-ecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 344544 4899999976666 579999999999886 45688999999999986 99999999999999966555555
Q ss_pred ----eecc-----ceeEEEeecccccHHHHHHHHHHhhhCCCCChH-HHHHHHHHHHHHHHhhh-CChHHHHHHHHHHhh
Q 010650 151 ----SASR-----EQMGYSFDALKTYVPEMVELLVDCVRNPVFLDW-EVNEELRKLKSELGELH-NNPQGLLLEAIHSTG 219 (505)
Q Consensus 151 ----~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~k~~~~~e~~~~~-~~p~~~~~~~~~~~~ 219 (505)
+++. +.+.+++++++++++.+|+++.+++++|.|+++ +|+.+++.++.++++.. +++..++...++..+
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5554 889999999999999999999999999999999 99999999999999876 567777787777665
Q ss_pred c-CCCCCCCC-----CCCh--------hhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCH-HhHHHHHHhhcCCC-CCC
Q 010650 220 Y-AGALGNPL-----LAPE--------SALNRLDGTILEEIVAENFTAPRMVLAASG-VDL-DELLPIAEPLLSDL-PRL 282 (505)
Q Consensus 220 ~-~~~~~~~~-----~~~~--------~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~-~~~~~~i~~~~~~l-~~~ 282 (505)
+ .++++... .+.. +.++.+ .++|++||+++|++++++++++| +++ +++.++++++|+.+ |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 4 44442211 1111 457788 99999999999999999999999 995 99999999999999 754
Q ss_pred CCCCCCCCccCCCc--eEecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhh
Q 010650 283 PPPTEPKSVYIGGD--YRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNE 360 (505)
Q Consensus 283 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~ 360 (505)
.....+ ..+..+. ..+..+....+++.+++... +++++.+++.|++.||++ ++||++||+
T Consensus 788 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe- 849 (995)
T 2fge_A 788 SGGLVT-WDGRLPLRNEAIVIPTQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV- 849 (995)
T ss_dssp SSCSCC-CCCCCCCCCEEEECSCSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-
T ss_pred CCCCCc-ccccCCccceEEEecCceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-
Confidence 432211 1111111 12233344555555665544 588999999999999985 799999999
Q ss_pred cCCeEEEEEeecccCCcceeE-EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHH
Q 010650 361 YQQIQSFSAFNSIFNNTGLFG-IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSE 439 (505)
Q Consensus 361 ~g~~Y~~~a~~~~~~~~g~~~-i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~ 439 (505)
.|++|+++++... .|.|. ++...+| +..++++.+.+.++.+...+ +|++||+++|..+++++ ....++...+.
T Consensus 850 ~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~-~~~~~~~~~~~ 923 (995)
T 2fge_A 850 SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDV-DSYQLPDAKGY 923 (995)
T ss_dssp TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHH-TCCCCHHHHHH
T ss_pred cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc-cCCCCHHHHHH
Confidence 7889999988665 48888 8877788 46777788887777666555 99999999999999998 45667777777
Q ss_pred HHHHHHHHhCCc-CCHHHHHHHHccCCHHHHHHHHHHHhc--CCcEEEEEcCCCCCCCH
Q 010650 440 DIGRQILTYGER-KSVDQFLSVLEHITLDDITNIAQKIIS--SPLTMASYGDVINVPGY 495 (505)
Q Consensus 440 ~~~~~~~~~~~~-~~~~~~~~~i~~vT~~di~~~a~~~l~--~~~~~~v~G~~~~~p~~ 495 (505)
..+..++ .|.+ ...+++++.|.+||++||+++|++|+. ++.+++++|+...++.+
T Consensus 924 ~~~~~~~-~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 924 SSLLRHL-LGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred HHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 6666665 5553 456788999999999999999999998 48999999998766655
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=4.4e-33 Score=313.60 Aligned_cols=413 Identities=10% Similarity=0.042 Sum_probs=324.3
Q ss_pred CCccCCCCCCCCCCC---CC-CCCCceEEEEcCCCcEEEEecCC---CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhc
Q 010650 54 LDTPLEGVSFPPSLP---DF-VEPGKVKVTTLENGIRIASETSV---SPAASIGLYLDFGSVYETPSSCGASNLLEKMAF 126 (505)
Q Consensus 54 l~~pl~~~~~p~~~~---~~-~~~~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~ 126 (505)
+..|-++.++|..+. .. ........++++||++||.++++ .|...+.+.+.+|...+++...++++++..|+.
T Consensus 493 ~~~p~~~~~ip~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~ 572 (990)
T 3cww_A 493 FKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLK 572 (990)
T ss_dssp CCCCCCCTTCCCCCCCCCCCTTCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcccccccCCCCCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 555555666666321 11 11122366889999999976555 468888888888887787778899999999986
Q ss_pred cCCCCCChHHHHHHHHHcCCeeeeeeccceeEEEeecccccHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhhhC-
Q 010650 127 KSTKNRSHLRIVREVEAIGGSILASASREQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWEVNEELRKLKSELGELHN- 205 (505)
Q Consensus 127 ~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~- 205 (505)
.+ ++..++...+ .|++++++++.+++.+++++++++++.+|+++.+.+.+|.|++++|+.+|+.++..+++...
T Consensus 573 ~~---~~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~ 647 (990)
T 3cww_A 573 DS---LNEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAE 647 (990)
T ss_dssp HH---HHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGS
T ss_pred HH---HHHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 53 2344444444 58889999999999999999999999999999999999999999999999999999999877
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHhHHHH---HHhhcCCCCC
Q 010650 206 NPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG-VDLDELLPI---AEPLLSDLPR 281 (505)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~~~~~~~~---i~~~~~~l~~ 281 (505)
+|..++.+.+...++.+++.. .+..+.|++++.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|.
T Consensus 648 ~p~~~a~~~~~~~l~~~~~~~--~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~ 725 (990)
T 3cww_A 648 QPHQHAMYYLRLLMTEVAWTK--DELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH 725 (990)
T ss_dssp CHHHHHHHHHHHHHBSSCCCH--HHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHhCCCCCCH--HHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCC
Confidence 899999999999888544442 3467889999999999999999998999999999 999999888 6778876653
Q ss_pred CCCCCC----CCC--ccCCC-ceEe---cCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 010650 282 LPPPTE----PKS--VYIGG-DYRQ---QADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHT 351 (505)
Q Consensus 282 ~~~~~~----~~~--~~~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s 351 (505)
...... ... ....+ ...+ ..+..++.+.+.+..+. ++.++.+++.||+++|. +
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~ 788 (990)
T 3cww_A 726 TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------E 788 (990)
T ss_dssp CEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------H
T ss_pred CCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------H
Confidence 311110 001 11222 2222 23466777777777754 58899999999999997 9
Q ss_pred HHHHHHHhhcCCeEEEEEeecccCCcce--eEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 010650 352 RLYLRVLNEYQQIQSFSAFNSIFNNTGL--FGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM 429 (505)
Q Consensus 352 ~L~~~lR~~~g~~Y~~~a~~~~~~~~g~--~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~ 429 (505)
+||.+||++.|++|++++......+... |.++..++|+++.++++.+.+++..+.+ + +|++||+++|..+++++..
T Consensus 789 ~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~ 866 (990)
T 3cww_A 789 PAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRLD 866 (990)
T ss_dssp HHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999987765443322 3335556898999999999999999988 6 9999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHhCCcC-CHHHHHHHHccCCHHHHHHHHHHHhc------CCcEEEEEcCCCCC
Q 010650 430 NLESRVIVSEDIGRQILTYGERK-SVDQFLSVLEHITLDDITNIAQKIIS------SPLTMASYGDVINV 492 (505)
Q Consensus 430 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vT~~di~~~a~~~l~------~~~~~~v~G~~~~~ 492 (505)
..+++......+|..++..+... ..+++.+.|++||++||++++++++. .+.+++++|+....
T Consensus 867 ~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~ 936 (990)
T 3cww_A 867 KPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDS 936 (990)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC--
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCcc
Confidence 99999888888888887554333 35788899999999999999999986 35789999987654
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.97 E-value=1.4e-30 Score=290.73 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=285.4
Q ss_pred CCCcEEEEecCC-CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhcc-CCCCCChHHHHHHHHHcCCeeeeeec------
Q 010650 82 ENGIRIASETSV-SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-STKNRSHLRIVREVEAIGGSILASAS------ 153 (505)
Q Consensus 82 ~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~~~~~l~~~l~~~g~~~~~~~~------ 153 (505)
.||++|+..+.+ ++.+++.++++.|... .+..+...|+..++.+ ||++++..++...++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999976665 5699999999999644 4577888999998866 99999999999999999998888764
Q ss_pred ----------cceeEEEeecccccHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhh-hCChHHHHHHHHHHhhc-
Q 010650 154 ----------REQMGYSFDALKTYVPEMVELLVDCVRNPVFLDWE-VNEELRKLKSELGEL-HNNPQGLLLEAIHSTGY- 220 (505)
Q Consensus 154 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e~~~~-~~~p~~~~~~~~~~~~~- 220 (505)
...+.+++.++.++++.+++++.+++.+|+|++.+ ++..++..++.+.+. ..+...++...+.+.++
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999864 777776666666653 34444455555555544
Q ss_pred CCCCCCCCCCChhhh--------------cCCCHHHHHHHHHhhcCCCCeEEEEcC-CC-HHhHHHHHHhhcCCCCC---
Q 010650 221 AGALGNPLLAPESAL--------------NRLDGTILEEIVAENFTAPRMVLAASG-VD-LDELLPIAEPLLSDLPR--- 281 (505)
Q Consensus 221 ~~~~~~~~~~~~~~l--------------~~lt~~~l~~f~~~~~~~~~~~l~i~G-~~-~~~~~~~i~~~~~~l~~--- 281 (505)
.+.+.....| ...+ +.+ .++|+++++++|+++|+++.++| .+ .+++.+.++++++.++.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 3333221111 1122 222 67999999999999999999999 75 46766666665554431
Q ss_pred -CCC----------CCCCC---------Ccc-C-CC-ceEecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCC
Q 010650 282 -LPP----------PTEPK---------SVY-I-GG-DYRQQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGG 338 (505)
Q Consensus 282 -~~~----------~~~~~---------~~~-~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~ 338 (505)
... ..... ..+ . .. ...+..+.++.++..++.... .++++..++.||+.|||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~-- 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK--PGEYLDPSFTVIVAALKN-- 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCCcceEEEEEecCCC--CCCCchHHHHHHHHHHCc--
Confidence 000 00000 001 1 11 223456788889999888766 678999999999999995
Q ss_pred CCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEEEEEeCcchHHHHHHHHHHHHHHhhC--CCCCCHHHH
Q 010650 339 SFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYACTGSDFVSKAVDLVVRELILIAT--PKQVTQVQL 416 (505)
Q Consensus 339 s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~~~~--~g~~t~~el 416 (505)
++||++||++.| +|+++++.. ..|.|.++...+|. ..+.++.+.+++..+.+ +| +|++||
T Consensus 1036 ------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp~-~~~tl~~~~~~~~~l~~~~~~-~teeEL 1097 (1193)
T 3s5m_A 1036 ------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDPN-LEKTLATFRESAKGLRKMADT-MTENDL 1097 (1193)
T ss_dssp ------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBSC-SHHHHHHHHTHHHHHHHHHHH-CCHHHH
T ss_pred ------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhhcCC-CCHHHH
Confidence 899999999876 999999865 56888888888874 67777777766666654 46 999999
Q ss_pred HHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC-CHHHHHHHHccCCHHHHHHHHHHHhcC----CcEEEEEcCCC
Q 010650 417 NRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK-SVDQFLSVLEHITLDDITNIAQKIISS----PLTMASYGDVI 490 (505)
Q Consensus 417 ~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vT~~di~~~a~~~l~~----~~~~~v~G~~~ 490 (505)
++||.++++++. ...++...+...+...+ +|.+. ..+++++.|.+||++||+++|++|+.. +..++++|+..
T Consensus 1098 ~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~-~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~~ 1174 (1193)
T 3s5m_A 1098 LRYIINTIGTID-KPRRGIELSKLSFLRLI-SNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTKE 1174 (1193)
T ss_dssp HHHHHHHHHHHS-CCCCTHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECHH
T ss_pred HHHHHHHHhccc-ccCChHHHHHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCHH
Confidence 999999999954 56676667776666554 66654 578899999999999999999999974 68999999853
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.91 E-value=2.5e-23 Score=188.91 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=156.4
Q ss_pred ecCCCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcc
Q 010650 299 QQADSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTG 378 (505)
Q Consensus 299 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g 378 (505)
+..+.+++++.++|.+|+ .++++.+++.+|+.+|+|| +.++||++||++ |++|+++++...+.+.|
T Consensus 18 ~~~~~~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g 83 (197)
T 3ih6_A 18 LRRAGGTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPG 83 (197)
T ss_dssp ----CCSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSC
T ss_pred EECCCCCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCe
Confidence 445678999999999997 6789999999999999976 449999999997 99999999887778899
Q ss_pred eeEEEEEeCcc-hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHH
Q 010650 379 LFGIYACTGSD-FVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQF 457 (505)
Q Consensus 379 ~~~i~~~~~p~-~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 457 (505)
.|.+++.++|+ +..++++.+.++++++.++| +|++||+++|+.++..+...++++..++..++.+++ .|.+....++
T Consensus 84 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~ 161 (197)
T 3ih6_A 84 LAMFGAQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQ 161 (197)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 99999999998 59999999999999999888 999999999999999999999999999999998886 5766667889
Q ss_pred HHHHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 458 LSVLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
.+.|++||++||++++++||. ++.++++++|..
T Consensus 162 ~~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 162 RDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSGGGCEEEEECC--
T ss_pred HHHHHhCCHHHHHHHHHHhCCccCeEEEEEeCCC
Confidence 999999999999999999998 788888998753
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.26 E-value=2.6e-05 Score=69.49 Aligned_cols=161 Identities=4% Similarity=-0.036 Sum_probs=110.7
Q ss_pred CCeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeec------cceeEEEeecccc-
Q 010650 94 SPAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASAS------REQMGYSFDALKT- 166 (505)
Q Consensus 94 ~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~- 166 (505)
.+...+.+.+.++.... .......++..++..|... .|.+.+...|..++++.+ ...+.+.+.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~--~d~~al~vl~~iLggg~sS----rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGS--PDFVGLDLAATILADTPSS----RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTS--TTHHHHHHHHHHHHSSTTS----HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCC--CcHHHHHHHHHHHcCCCCc----hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 45556666666665443 2556677788888654322 344444444544333322 2235566667666
Q ss_pred cHHHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhcCCCCCCCCCCChhhhcCCCHHHH
Q 010650 167 YVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGYAGALGNPLLAPESALNRLDGTIL 243 (505)
Q Consensus 167 ~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lt~~~l 243 (505)
+++.+++.+...+.+ -.++++++++.|..++..+.....++...+.......+++. .. ......+.|+++|.+++
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~-~~-~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD-WR-LFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC-TT-HHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCC-HH-HHHHHHHHHHhCCHHHH
Confidence 699888888777654 35999999999999999998888888887777766655421 11 11223477999999999
Q ss_pred HHHHHhhcCCCCeEEEEcC
Q 010650 244 EEIVAENFTAPRMVLAASG 262 (505)
Q Consensus 244 ~~f~~~~~~~~~~~l~i~G 262 (505)
.++.++++.+.+.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999988887
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.98 E-value=0.00017 Score=72.35 Aligned_cols=173 Identities=10% Similarity=0.058 Sum_probs=111.3
Q ss_pred CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEE
Q 010650 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i 382 (505)
.+...+.+.+..+.............++..++..|.. ..+| .+...-+.+..+..|..+++ +.+. + ...+
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~--~~~~--~~~~~~~~~~l~~~G~~~~a--~t~~--~--~t~~ 92 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTG--SGKS--ALDENAIADRLADIGARLGG--GAEA--D--RASF 92 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEEC--STTS--CEEHHHHHHHHHHTTCEEEE--EECS--S--CEEE
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccC--CCcc--CCCHHHHHHHHHHhCCEEEe--ecCC--C--eEEE
Confidence 4567777777765411123346778888888864310 0000 01122233444555654444 3322 1 3556
Q ss_pred EEEeCcchH--HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC-CHHHHHH
Q 010650 383 YACTGSDFV--SKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK-SVDQFLS 459 (505)
Q Consensus 383 ~~~~~p~~~--~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~ 459 (505)
++.+.+++. ..+++.+.+.+.+. .++++++++.|..+...+....+++...+.......+..+.+. ... ..+
T Consensus 93 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~ 167 (424)
T 3amj_B 93 SLRVLSSPAERNSALTILRDILAHP----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVA 167 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHH
T ss_pred EEEEeccccChhHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHH
Confidence 677777776 77777777665443 4999999999999999988877777777665555554333321 111 456
Q ss_pred HHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 460 VLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
.|+++|.+|++++.++++. .+.+++++||.+
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~ 199 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDIT 199 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 7899999999999999998 889999999874
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.90 E-value=6.1e-05 Score=75.65 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=114.1
Q ss_pred CCceEEEEEEeeCCCCCCC--hhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCccee
Q 010650 303 SPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~ 380 (505)
.+...+.+.|.... ..+ .......++..++..|+. .-| ...+.+.+ +..|....+ +.+. + ..
T Consensus 21 ~~~~~~~l~~~~Gs--~~e~~~~~G~ah~leh~lf~gt~---~~~----~~~~~~~l-~~~G~~~na--~t~~--d--~t 84 (421)
T 3hdi_A 21 VRSVSIGIWVGTGS--RYESAEENGISHFLEHMFFKGTN---TRS----AQEIAEFF-DSIGGQVNA--FTSK--E--YT 84 (421)
T ss_dssp CSEEEEEEEESCCG--GGCCGGGTTHHHHHHHHTTSBBS---SSB----HHHHHHHH-HTTTSCEEE--EECS--S--CE
T ss_pred CCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC---CCC----HHHHHHHH-HHhCCceee--eecc--c--eE
Confidence 45667777777654 333 335677788888875431 000 12444444 445654433 3322 1 24
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC--CHHHHH
Q 010650 381 GIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQFL 458 (505)
Q Consensus 381 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~ 458 (505)
.+++.+.+++..++++.+.+.+..- .++++++++.|..++..+....+++...+.......+..+.+. +..-..
T Consensus 85 ~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 160 (421)
T 3hdi_A 85 CYYAKVLDDHAGQAIDTLSDMFFHS----TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTV 160 (421)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCH
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 5667777788888888887766543 4999999999999999998888888877766665555443331 222245
Q ss_pred HHHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 459 SVLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 459 ~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
+.|+++|.+|++++.++++. ++.+++++||.+
T Consensus 161 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 161 ETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH 193 (421)
T ss_dssp HHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC
Confidence 67899999999999999999 889999999975
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.88 E-value=0.00046 Score=69.27 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=111.0
Q ss_pred CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEE
Q 010650 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i 382 (505)
.+...+.+.+..+.......+.....++.+++..| +. ....+..|..+++ +... ....+
T Consensus 20 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~g-------------t~--~~~~~~~G~~~na--~t~~----~~t~~ 78 (431)
T 3cx5_A 20 AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSK-------------EN--SAVAAKEGLALSS--NISR----DFQSY 78 (431)
T ss_dssp CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSH-------------HH--HHHHHHTTCEEEE--EECS----SCEEE
T ss_pred CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcC-------------CC--cccHHHcCCeeee--eecC----CeEEE
Confidence 45677788887764211124577888888888753 21 1223555654433 3322 13567
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHHhCCc--CCHHHHHH
Q 010650 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESR-VIVSEDIGRQILTYGER--KSVDQFLS 459 (505)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~--~~~~~~~~ 459 (505)
++.+.+++...+++.+.+.+.+..... ++++++++.|..++..+....+++ ...+.......+..+.+ .+.....+
T Consensus 79 ~~~~~~~~l~~~l~ll~~~~~~p~~~~-f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (431)
T 3cx5_A 79 IVSSLPGSTDKSLDFLNQSFIQQKANL-LSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLE 157 (431)
T ss_dssp EEEECSTTHHHHHHHHHHHHHTCSTTT-TCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHH
T ss_pred EEEechhhHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHH
Confidence 778888888888888887666542101 899999999999999887766666 66655444444433332 12223457
Q ss_pred HHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 460 VLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
.|+++|.+|++++.++++. .+.+++++||.+
T Consensus 158 ~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 189 (431)
T 3cx5_A 158 SLENLVVADLESFANNHFLNSNAVVVGTGNIK 189 (431)
T ss_dssp HHHTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCC
Confidence 7899999999999999998 889999999875
No 27
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.84 E-value=0.0004 Score=69.51 Aligned_cols=175 Identities=16% Similarity=0.121 Sum_probs=112.5
Q ss_pred CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCc-ccHHHHHHHhhc-CCeEEEEEeecccCCccee
Q 010650 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGM-HTRLYLRVLNEY-QQIQSFSAFNSIFNNTGLF 380 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~-~s~L~~~lR~~~-g~~Y~~~a~~~~~~~~g~~ 380 (505)
.+...+.+.|..+. .. +......++.+++..|.. ++ ...-+.+..+.. |..++++... ......+
T Consensus 22 ~~~~~~~~~~~~g~--~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~l~~~~G~~~~a~t~~--~~t~~~~ 88 (425)
T 3d3y_A 22 YKTVRLLVRFNTRL--NH-ETITKRTLLSSLMETNSL--------NYPNQVKLSERLAELYGASFGIGVSK--KGNQHWF 88 (425)
T ss_dssp CSEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHHHHHTTSCEEEEEEEE--ETTEEEE
T ss_pred cceEEEEEEEeCCC--Cc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHHHHHHhCceEeeeeee--cCceEEE
Confidence 46788888888875 23 335667888888864321 11 111233334443 6655554432 2222235
Q ss_pred EEEEEeCcc-------hHHHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHH-hCCc
Q 010650 381 GIYACTGSD-------FVSKAVDLVVRELILIA-TPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILT-YGER 451 (505)
Q Consensus 381 ~i~~~~~p~-------~~~~~~~~~~~~l~~~~-~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~ 451 (505)
.+++.+.++ +...+++.+.+.+.+-. .++.++++++++.|..+...+....+++...+.......+. .+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~ 168 (425)
T 3d3y_A 89 NISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSED 168 (425)
T ss_dssp EEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTT
T ss_pred EEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCC
Confidence 566666554 57888887777665531 00118999999999999999887777777776555555543 2332
Q ss_pred C--CHHHHHHHHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 452 K--SVDQFLSVLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 452 ~--~~~~~~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
. +.....+.|+++|.+|++++.++++. .+.+++++||.+
T Consensus 169 ~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 169 QKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp TTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred ccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 1 12234567889999999999999998 889999999874
No 28
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.82 E-value=0.0005 Score=67.07 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=109.2
Q ss_pred CCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeEE
Q 010650 303 SPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGI 382 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~i 382 (505)
.+...+.+.+.+.. ..+.......++.+++..|.. .-| ...+.+.+ +..|..+++ +.+. ....+
T Consensus 10 ~~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~---~~~----~~~l~~~l-~~~G~~~na--~t~~----~~t~~ 73 (352)
T 3cx5_B 10 TKISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTN---TRS----ALKLVRES-ELLGGTFKS--TLDR----EYITL 73 (352)
T ss_dssp CSEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBS---SSC----HHHHHHHH-HHHTCEEEE--EECS----SCEEE
T ss_pred CceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcC---CCC----HHHHHHHH-HHhCCeEEE--EEcc----ceEEE
Confidence 45555556665543 344556778888888865421 001 12344444 455654433 3322 24566
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcCCHHHHHHHH
Q 010650 383 YACTGSDFVSKAVDLVVRELILIATPKQVTQVQLN-RAKEATKSAVLMNLESRVIVSEDIGRQILTYGERKSVDQFLSVL 461 (505)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~-~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 461 (505)
++.+.+++...+++.+.+.+.+- .+++++++ +.|..++..+....+++...+.......+. +.+.......+.|
T Consensus 74 ~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~p~~~~~~~~~l 148 (352)
T 3cx5_B 74 KATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITF-RKGLGNPLLYDGV 148 (352)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTTTSCSSCCSS
T ss_pred EEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCccchhhh
Confidence 77777888888888888777654 49999998 999999999887777887776555444443 3221111125679
Q ss_pred ccCCHHHHHHHHHHHhc-CCcEEEEEcCC
Q 010650 462 EHITLDDITNIAQKIIS-SPLTMASYGDV 489 (505)
Q Consensus 462 ~~vT~~di~~~a~~~l~-~~~~~~v~G~~ 489 (505)
+++|.+|++++.++++. ++.+++++| .
T Consensus 149 ~~it~~~l~~f~~~~y~~~n~~l~v~G-~ 176 (352)
T 3cx5_B 149 ERVSLQDIKDFADKVYTKENLEVSGEN-V 176 (352)
T ss_dssp SCCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred ccCCHHHHHHHHHHhCCcCcEEEEEeC-C
Confidence 99999999999999998 888899999 5
No 29
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.82 E-value=0.00026 Score=70.65 Aligned_cols=159 Identities=13% Similarity=0.011 Sum_probs=111.3
Q ss_pred CeEEEEEEEeccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeeeeecc------ceeEEEeecccccH
Q 010650 95 PAASIGLYLDFGSVYETPSSCGASNLLEKMAFKSTKNRSHLRIVREVEAIGGSILASASR------EQMGYSFDALKTYV 168 (505)
Q Consensus 95 ~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~------~~~~~~~~~~~~~l 168 (505)
+...+.+.+.+.....+ ......++.+++..|.. ..|.+.+...|..++++... ..+.+.+.+.++++
T Consensus 234 ~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~~----srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEGS----GRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTTT----SHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred cceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCcc----hHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 56666676776554333 45566777777754321 24555554466554444332 23556667777888
Q ss_pred HHHHHHHHHhhhCC---CCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCChhhhcCCCHHHHH
Q 010650 169 PEMVELLVDCVRNP---VFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPESALNRLDGTILE 244 (505)
Q Consensus 169 ~~~l~ll~~~~~~p---~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lt~~~l~ 244 (505)
+++++.+.+.+..- .++++++++.|..++..+.....++...+.......++ ..+.. .....+.|+++|.+++.
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS--LEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhCCHHHHH
Confidence 88888887766543 59999999999999999988888888888777776665 33221 12234778999999999
Q ss_pred HHHHhhcCCCCeEEEEcC
Q 010650 245 EIVAENFTAPRMVLAASG 262 (505)
Q Consensus 245 ~f~~~~~~~~~~~l~i~G 262 (505)
++.++++.+.++ ++++|
T Consensus 386 ~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHTTTTTSCE-EEEEE
T ss_pred HHHHHhcCcccE-EEEEC
Confidence 999999999998 89988
No 30
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.80 E-value=0.00066 Score=68.63 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCCceEEEEEEeeCCCCCCC--hhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcce
Q 010650 302 DSPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGL 379 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~ 379 (505)
+.+...+.+.|.... ..+ .......++.+++..|+. .-|+ .-+.+.+ +..|.. +.++.+.. .
T Consensus 31 ~~~~~~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT~---~~~~----~~~~~~l-~~~G~~--~na~t~~d----~ 94 (446)
T 1pp9_A 31 SQPTCTVGVWIDAGS--RYESEKNNGAGYFVEHLAFKGTK---NRPG----NALEKEV-ESMGAH--LNAYSTRE----H 94 (446)
T ss_dssp SCSEEEEEEEESCSG--GGCCTTTTTHHHHHHHHTTSCBS---SSTT----THHHHHH-HHTTCE--EEEEECSS----C
T ss_pred CCCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC---CCCH----HHHHHHH-HHcCCE--EEEEEcCC----e
Confidence 345566667776654 332 345667788888875421 1122 2344333 445643 44443222 2
Q ss_pred eEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC--CHHHH
Q 010650 380 FGIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQF 457 (505)
Q Consensus 380 ~~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~ 457 (505)
..+++.+..++..++++.+.+.+.+- .++++++++.|..+...+....+++...+.......+..+.+. +..-.
T Consensus 95 t~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 170 (446)
T 1pp9_A 95 TAYYIKALSKDLPKAVELLADIVQNC----SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGP 170 (446)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 46677777788888888888877664 4999999999999999988877787766655444443333221 11223
Q ss_pred HHHHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 458 LSVLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
.+.|+++|.+|++++.++++. ++.+++++||.+
T Consensus 171 ~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 171 SENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 567889999999999999998 889999999875
No 31
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.79 E-value=0.00021 Score=71.92 Aligned_cols=167 Identities=13% Similarity=0.033 Sum_probs=110.4
Q ss_pred CCceEEEEEEeeCCCCCCC-hhhHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEEeecccCCccee
Q 010650 303 SPETHIALAFEVPGGWLKD-KEAIILTVLQVLMGGGGSFSAGGPGKGMH-TRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~-~~~~~~~vl~~lL~~~~s~~~~~pg~g~~-s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~ 380 (505)
.+...+.+.|..+. ..+ .......++..++..|.. + +. ..+.. ..+..|..++++.. . ..+
T Consensus 33 ~~~~~~~~~~~~Gs--~~e~~~~g~a~lle~ll~~gt~-------~-~~~~~l~~-~l~~~g~~~~a~t~--~----~~~ 95 (434)
T 3gwb_A 33 LPMFDLRLIFAAGS--SQDGNAPGVALLTNAMLNEGVA-------G-KDVGAIAQ-GFEGLGADFGNGAY--K----DMA 95 (434)
T ss_dssp SSEEEEEEEESCSG--GGCTTSTTHHHHHHHHGGGEET-------T-EEHHHHHH-HHHTTTCEEEEEEC--S----SCE
T ss_pred CCEEEEEEEEeccc--ccCCcchhHHHHHHHHHhcCcc-------c-CCHHHHHH-HHHHhCCEEEeeec--C----CeE
Confidence 46677778887764 333 345566777787765321 0 11 12333 33445655444332 1 234
Q ss_pred EEEEEeCcch--HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCcC--CHHH
Q 010650 381 GIYACTGSDF--VSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGERK--SVDQ 456 (505)
Q Consensus 381 ~i~~~~~p~~--~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~ 456 (505)
.+++.+.+++ ...+++.+.+.+.+- .++++++++.|..++..+....+++...+.......+..+.+. ....
T Consensus 96 ~~~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G 171 (434)
T 3gwb_A 96 VASLRSLSAVDKREPALKLFAEVVGKP----TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDG 171 (434)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHHSC----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTC
T ss_pred EEEEEecCccccHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5566666665 777777777665442 4999999999999999998888888877766555555333321 1111
Q ss_pred HHHHHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 457 FLSVLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 457 ~~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
..+.|+++|.+|++++.++++. .+.+++++||.+
T Consensus 172 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 172 DAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp CTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 3467999999999999999998 889999999874
No 32
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.76 E-value=0.0011 Score=66.83 Aligned_cols=167 Identities=11% Similarity=-0.007 Sum_probs=111.7
Q ss_pred CCCCeEEEEEEEeccccCCCCCCCcHHHHHHHhhcc-----CCCCCChHHHHHHHH-HcCCeeeeee------ccceeEE
Q 010650 92 SVSPAASIGLYLDFGSVYETPSSCGASNLLEKMAFK-----STKNRSHLRIVREVE-AIGGSILASA------SREQMGY 159 (505)
Q Consensus 92 ~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-----gt~~~~~~~l~~~l~-~~g~~~~~~~------~~~~~~~ 159 (505)
.+.+...+.+.+.+..... .......++.+++.. |.+......|.+.+. ..|+.++++. ....+.+
T Consensus 242 ~~~~~~~v~~~~~~~~~~~--~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i 319 (443)
T 1hr6_B 242 NTLPTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGM 319 (443)
T ss_dssp TTCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEE
T ss_pred CCccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEE
Confidence 3456777777777754332 245566678887732 111122234666665 5555333222 2234556
Q ss_pred Eeecc--cccHHHHHHHHHHhh---hCCCCChHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHhhc-CCCCCCCCCCChh
Q 010650 160 SFDAL--KTYVPEMVELLVDCV---RNPVFLDWEVNEELRKLKSELGELHNNPQGLLLEAIHSTGY-AGALGNPLLAPES 233 (505)
Q Consensus 160 ~~~~~--~~~l~~~l~ll~~~~---~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (505)
.+.+. +++++++++.+.+.+ .+-.++++++++.|..+...+.....++...+.......++ +.+.. .....+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 397 (443)
T 1hr6_B 320 YIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVFE 397 (443)
T ss_dssp EEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHHH
T ss_pred EEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHHH
Confidence 66677 778888888887655 44559999999999999999888777887666655555433 43322 122347
Q ss_pred hhcCCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010650 234 ALNRLDGTILEEIVAENFTAPRMVLAASG 262 (505)
Q Consensus 234 ~l~~lt~~~l~~f~~~~~~~~~~~l~i~G 262 (505)
.|+++|.++++++.++++.+++++++++|
T Consensus 398 ~i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 398 QVDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 78999999999999999999999999999
No 33
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.75 E-value=0.00067 Score=68.25 Aligned_cols=167 Identities=8% Similarity=0.017 Sum_probs=109.6
Q ss_pred CCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhcCCeEEEEEeecccCCccee
Q 010650 302 DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMH-TRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~-s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~ 380 (505)
..+...+.+.+..+.............++.+++..|.. + +. ..+...+ +..|..+++ +.. ...+
T Consensus 41 ~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~-------~-~~~~~~~~~l-~~~G~~~na--~t~----~~~t 105 (439)
T 1pp9_B 41 YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTK-------G-ASSFKITRGI-EAVGGKLSV--TST----RENM 105 (439)
T ss_dssp CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBS-------S-SCHHHHHHHH-HHTTCEEEE--EEC----SSCE
T ss_pred CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCC-------c-CCHHHHHHHH-HHhCCeEEE--Eec----ceEE
Confidence 34566666777665411112346777888888864321 0 11 2344333 455654443 322 2345
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCc--CCHHHHH
Q 010650 381 GIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER--KSVDQFL 458 (505)
Q Consensus 381 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~ 458 (505)
.+++.+.+++...+++.+.+.+.+. .++++++++.|..+...+....+++...+.......+ ++.+ .+.....
T Consensus 106 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~g~~ 180 (439)
T 1pp9_B 106 AYTVECLRDDVDILMEFLLNVTTAP----EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA-YRNALANSLYCPD 180 (439)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH-BSSGGGSCSSCCG
T ss_pred EEEEEeehhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH-hcCCCCCCccCCH
Confidence 6677777888888888777766543 4999999999999999988777777766655554444 3321 1112234
Q ss_pred HHHccCCHHHHHHHHHHHhc-CCcEEEEEcC
Q 010650 459 SVLEHITLDDITNIAQKIIS-SPLTMASYGD 488 (505)
Q Consensus 459 ~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~ 488 (505)
+.|+++|.+|++++.++++. .+.+++++|+
T Consensus 181 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 181 YRIGKVTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp GGTTTCCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred HHHhhcCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 57899999999999999998 8899999997
No 34
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.68 E-value=0.00096 Score=68.07 Aligned_cols=169 Identities=11% Similarity=-0.006 Sum_probs=111.8
Q ss_pred CCCceEEEEEEeeCCCCCCChhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCcceeE
Q 010650 302 DSPETHIALAFEVPGGWLKDKEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLFG 381 (505)
Q Consensus 302 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~~ 381 (505)
+.+.+.+.+.+................++..++..|+. .-| ...+...+ +..|..+.+ +.+. -...
T Consensus 23 ~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~---~~~----~~~~~~~l-e~~G~~~na--~t~~----d~t~ 88 (475)
T 1hr6_A 23 PGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTE---HVE----GRAMAETL-ELLGGNYQC--TSSR----ENLM 88 (475)
T ss_dssp CCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBT---TBC----HHHHHHHH-HHTTSCEEE--EECS----SCEE
T ss_pred CCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCC---CCC----HHHHHHHH-HHcCCEEEE--EEcc----CeEE
Confidence 35677777777765421112456777888888875421 000 02343333 445654444 3222 1356
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHhCCc--CCHHHHHH
Q 010650 382 IYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLMNLESRVIVSEDIGRQILTYGER--KSVDQFLS 459 (505)
Q Consensus 382 i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~ 459 (505)
+++.+.+++...+++.+.+.+... .+++++|++.|..++..+....+++...+.+.....+..+.+ .+.....+
T Consensus 89 y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~ 164 (475)
T 1hr6_A 89 YQASVFNQDVGKMLQLMSETVRFP----KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRG 164 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGG
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 677788888888888777766543 499999999999999998887778877766655555433322 11122346
Q ss_pred HHccCCHHHHHHHHHHHhc-CCcEEEEEcCC
Q 010650 460 VLEHITLDDITNIAQKIIS-SPLTMASYGDV 489 (505)
Q Consensus 460 ~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~ 489 (505)
.|+++|.+||+++.++++. ++.+++++| .
T Consensus 165 ~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~ 194 (475)
T 1hr6_A 165 LIPSISKYYLLDYRNKFYTPENTVAAFVG-V 194 (475)
T ss_dssp GGGGCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred HHhhcCHHHHHHHHHHhCCcccEEEEEeC-C
Confidence 7899999999999999998 889999999 5
No 35
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.65 E-value=0.00098 Score=67.31 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=106.4
Q ss_pred CCceEEEEEEeeCCCCCCC--hhhHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhcCCeEEEEEeecccCCccee
Q 010650 303 SPETHIALAFEVPGGWLKD--KEAIILTVLQVLMGGGGSFSAGGPGKGMHTRLYLRVLNEYQQIQSFSAFNSIFNNTGLF 380 (505)
Q Consensus 303 ~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~~~pg~g~~s~L~~~lR~~~g~~Y~~~a~~~~~~~~g~~ 380 (505)
.+...+.+.+.+.. ..+ .......++..++..|.. .-|. ..+.+.+ +..|. ++.++.+. + ..
T Consensus 26 ~~~v~~~~~~~~Gs--~~e~~~~~Glah~lehmlf~Gt~---~~~~----~~l~~~l-~~~g~--~~na~t~~--d--~t 89 (445)
T 3ami_A 26 APTLVHMVWYRVGS--MDETTGTTGVAHALEHMMFKGTK---DVGP----GEFSKRV-AAMGG--RDNAFTTR--D--YT 89 (445)
T ss_dssp SSEEEEEEEESCCG--GGCCTTCTTHHHHHHHHTTSCBS---SSCT----THHHHHH-HHTTC--EEEEEECS--S--CE
T ss_pred CCeEEEEEEEeecc--CCCCCCCccHHHHHHHhhcCCCC---CCCH----HHHHHHH-HHhCC--ccccccCC--C--eE
Confidence 45566666666543 222 345666777777765421 1121 3444333 44564 34444333 2 23
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-cccChHHHHHHHHHHHHHhCCcC--CHHHH
Q 010650 381 GIYACTGSDFVSKAVDLVVRELILIATPKQVTQVQLNRAKEATKSAVLM-NLESRVIVSEDIGRQILTYGERK--SVDQF 457 (505)
Q Consensus 381 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~g~~t~~el~~ak~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~--~~~~~ 457 (505)
.+++.+.+++...+++.+.+.+..- .++++++++.|..+...+.+ ..+++...+.......+..+.+. +..-.
T Consensus 90 ~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 165 (445)
T 3ami_A 90 AYYQQVPSSRLSDVMGLEADRMANL----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165 (445)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCC
T ss_pred EEEEECCHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 4455666777888877777766443 49999999999999999884 44566666555444444333321 11123
Q ss_pred HHHHccCCHHHHHHHHHHHhc-CCcEEEEEcCCC
Q 010650 458 LSVLEHITLDDITNIAQKIIS-SPLTMASYGDVI 490 (505)
Q Consensus 458 ~~~i~~vT~~di~~~a~~~l~-~~~~~~v~G~~~ 490 (505)
.+.|+++|.+|++++.++++. ++.+++++||.+
T Consensus 166 ~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 166 MNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred HHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 567899999999999999998 889999999863
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.41 E-value=0.04 Score=56.27 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=95.3
Q ss_pred cCCCCeEEEEEEEeccccCCCCCCCc-----HHHHHHHhhccCCCCCChHHHHHHHH---HcCCeeeeee----ccceeE
Q 010650 91 TSVSPAASIGLYLDFGSVYETPSSCG-----ASNLLEKMAFKSTKNRSHLRIVREVE---AIGGSILASA----SREQMG 158 (505)
Q Consensus 91 ~~~~~~~~i~l~~~~Gs~~e~~~~~g-----~a~ll~~l~~~gt~~~~~~~l~~~l~---~~g~~~~~~~----~~~~~~ 158 (505)
+.+.+...+.+.+++.....++ ... ...++..+++. .+...+. ..|..++++. .++...
T Consensus 261 ~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg~--------~L~~~lre~~~~gl~y~~~s~~~~~~~~~~ 331 (492)
T 3go9_A 261 NEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALFW--------HIKQVLEKNNQKNLKLGFDCRVQYQRAQCA 331 (492)
T ss_dssp ESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHSCCTTCEEEEEEEEETTEEEEE
T ss_pred cCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccccccccCchhhhhhcceE
Confidence 3445556666666665443331 111 12455555531 3443343 3454443332 334456
Q ss_pred EEeecccccHHHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhhh-----CChHHHHHHHHHHhhcCCCCCCCC--
Q 010650 159 YSFDALKTYVPEMVELLVDCVRN---PVFLDWEVNEELRKLKSELGELH-----NNPQGLLLEAIHSTGYAGALGNPL-- 228 (505)
Q Consensus 159 ~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~-- 228 (505)
+.+.+.+++++++++.+...+.. -.|+++++++.|..++..+.... .++..++...+........++.+.
T Consensus 332 ~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (492)
T 3go9_A 332 IHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQY 411 (492)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHH
Confidence 77777788899988888776554 35999999999999888876542 234444444444443332222211
Q ss_pred CCC-hhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010650 229 LAP-ESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (505)
Q Consensus 229 ~~~-~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G 262 (505)
... .+.|+++|.+++.++.++++.+++. ++++|
T Consensus 412 ~~~~~~~i~~vT~edV~~~a~~~l~~~~~-~vvvg 445 (492)
T 3go9_A 412 QKLRQAFLSGLTLAELNRELKQQLSQDTT-LVLMQ 445 (492)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCE-EEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCCCe-EEEEc
Confidence 001 1448899999999999999987554 45554
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.77 E-value=86 Score=18.81 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010650 396 DLVVRELILIATPKQVTQVQLNRAKEA 422 (505)
Q Consensus 396 ~~~~~~l~~~~~~g~~t~~el~~ak~~ 422 (505)
..+..++..+.++| ++.+|+......
T Consensus 3 aalkselqalkkeg-fspeelaalese 28 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 34566778888889 999998765443
No 38
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=24.99 E-value=85 Score=23.77 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=38.4
Q ss_pred hcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010650 219 GYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (505)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G 262 (505)
-|++++...+++..+.|+..+.++...=..+.|.+..+++.+.|
T Consensus 61 ~Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 61 SYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp EECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred eecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 34778888888888999999999888888899999999999988
No 39
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=24.29 E-value=71 Score=22.79 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=37.8
Q ss_pred hcCCCCCCCCCCChhhhcCCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010650 219 GYAGALGNPLLAPESALNRLDGTILEEIVAENFTAPRMVLAASG 262 (505)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~lt~~~l~~f~~~~~~~~~~~l~i~G 262 (505)
.|++++...+++..+.|+..+.++...=..+.|....+++.+.|
T Consensus 31 ~Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 31 SYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp EECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred EecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 34777777788888999999999888888899999999999988
Done!