BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010652
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/478 (52%), Positives = 337/478 (70%), Gaps = 11/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A +IG+ GLAVMG+NLALN+ KG+ ++VYNR K DE L A + + G Y+
Sbjct: 3 AKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSIE 59
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV ++++PR ++++VKAG+P D TI L H+ GD +IDGGN ++ +T+RR E ++
Sbjct: 60 EFVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAEL 119
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
G+ ++G GVSGGEEGA GPS+MPGG EA+ +R I + +AA+VD PC TYIG G+G
Sbjct: 120 GIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAG 179
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
++VKMVHNGIEYGDMQLI+EAY +LKHV G+ AEL E+F +WNKGEL S+L+EITADIF
Sbjct: 180 HYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIF 239
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
DE LVD ILDK G KGTGKWT Q A +L V P I S+ R+LS +K+ER K
Sbjct: 240 TKIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVK 299
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
A+KVL +K D+ I+ VR+ALY SKICSYAQG +++ S E WNL
Sbjct: 300 ASKVLAGPAVKP------FEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNL 353
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGL 423
+G++A I++GGCIIRA FL +IK+AY R+P L++L++D F +++V+R Q A R +V
Sbjct: 354 RYGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVAT 412
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
A GI PG ++L+Y+D+YR A LPANL+QAQRD FGAHTYER+D+ G FHTEW K
Sbjct: 413 AAMRGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 470
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/478 (52%), Positives = 337/478 (70%), Gaps = 11/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A +IG+ GLAVMG+NLALN+ KG+ ++VYNR K DE L A + + G Y+
Sbjct: 4 AKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSIE 60
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV ++++PR ++++VKAG+P D TI L H+ GD +IDGGN ++ +T+RR E ++
Sbjct: 61 EFVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAEL 120
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
G+ ++G GVSGGEEGA GPS+MPGG EA+ +R I + +AA+VD PC TYIG G+G
Sbjct: 121 GIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAG 180
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
++VKMVHNGIEYGDMQLI+EAY +LKHV G+ AEL E+F +WNKGEL S+L+EITADIF
Sbjct: 181 HYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIF 240
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
DE LVD ILDK G KGTGKWT Q A +L V P I S+ R+LS +K+ER K
Sbjct: 241 TKIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVK 300
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
A+KVL +K D+ I+ VR+ALY SKICSYAQG +++ S E WNL
Sbjct: 301 ASKVLAGPAVKP------FEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNL 354
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGL 423
+G++A I++GGCIIRA FL +IK+AY R+P L++L++D F +++V+R Q A R +V
Sbjct: 355 RYGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVAT 413
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
A GI PG ++L+Y+D+YR A LPANL+QAQRD FGAHTYER+D+ G FHTEW K
Sbjct: 414 AAMRGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 471
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/477 (49%), Positives = 326/477 (68%), Gaps = 12/477 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + G+ G+AVMG+NLALNV +G+ +++YNRTTSK +E + H++ L T T
Sbjct: 2 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTK--TLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S+++PR ++++V+AG+ D TI +L + GD +IDGGN + +T RR E +
Sbjct: 59 EFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGG 182
G+ ++G GVSGGE+GA GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G
Sbjct: 119 GINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 178
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
+G++VKMVHNGIEYGDMQLI+E+YD+LK + GLSNAE+ IF+EWN+GEL+S+L+EIT +
Sbjct: 179 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 238
Query: 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 302
+ K KD+ GEG +VDKILDK G KGTGKWT + A +L V P I S+ RY+S K+ER
Sbjct: 239 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDER 298
Query: 303 EKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW 362
KA+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W
Sbjct: 299 VKASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDW 351
Query: 363 NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVG 422
+L +G +A+IW+ GCIIRA FL I A+ ++ L +L++D F + Q A R VV
Sbjct: 352 DLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVS 411
Query: 423 LAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
LA+ AG P +++SY+D+YR LPANL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 412 LAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 468
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/477 (49%), Positives = 326/477 (68%), Gaps = 12/477 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + G+ G+AVMG+NLALNV +G+ +++YNRTTSK +E + H++ L T T
Sbjct: 3 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTK--TLE 59
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S+++PR ++++V+AG+ D TI +L + GD +IDGGN + +T RR E +
Sbjct: 60 EFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS 119
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGG 182
G+ ++G GVSGGE+GA GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G
Sbjct: 120 GINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 179
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
+G++VKMVHNGIEYGDMQLI+E+YD+LK + GLSNAE+ IF+EWN+GEL+S+L+EIT +
Sbjct: 180 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 239
Query: 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 302
+ K KD+ GEG +VDKILDK G KGTGKWT + A +L V P I S+ RY+S K+ER
Sbjct: 240 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDER 299
Query: 303 EKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW 362
KA+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W
Sbjct: 300 VKASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDW 352
Query: 363 NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVG 422
+L +G +A+IW+ GCIIRA FL I A+ ++ L +L++D F + Q A R VV
Sbjct: 353 DLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVS 412
Query: 423 LAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
LA+ AG P +++SY+D+YR LPANL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 413 LAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 469
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/477 (49%), Positives = 326/477 (68%), Gaps = 12/477 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + G+ G+AVMG+NLALNV +G+ +++YNRTTSK +E + H++ L T T
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTK--TLE 60
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S+++PR ++++V+AG+ D TI +L + GD +IDGGN + +T RR E +
Sbjct: 61 EFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS 120
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGG 182
G+ ++G GVSGGE+GA GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G
Sbjct: 121 GINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 180
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
+G++VKMVHNGIEYGDMQLI+E+YD+LK + GLSNAE+ IF+EWN+GEL+S+L+EIT +
Sbjct: 181 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 240
Query: 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 302
+ K KD+ GEG +VDKILDK G KGTGKWT + A +L V P I S+ RY+S K+ER
Sbjct: 241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDER 300
Query: 303 EKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW 362
KA+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W
Sbjct: 301 VKASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDW 353
Query: 363 NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVG 422
+L +G +A+IW+ GCIIRA FL I A+ ++ L +L++D F + Q A R VV
Sbjct: 354 DLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVS 413
Query: 423 LAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
LA+ AG P +++SY+D+YR LPANL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 414 LAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 470
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/473 (51%), Positives = 322/473 (68%), Gaps = 12/473 (2%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + A G+ L +YT ++FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFV 73
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +G
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+G++
Sbjct: 134 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 193
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLI+EAY +LK L+N ELA+ F EWN GEL S+L++IT DIF
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 253
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R A+
Sbjct: 254 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KVL + Q G DK I+ VR+ALY KI SYAQG + LR+ S E W+LN+
Sbjct: 313 KVLS----GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNY 365
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+A+I++ GCIIRA FL +I AY NP +A+L++ P F + Q A R VV A+
Sbjct: 366 GEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQ 425
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 426 IGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/473 (50%), Positives = 321/473 (67%), Gaps = 12/473 (2%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + A G+ L +YT ++FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFV 73
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +G
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+G++
Sbjct: 134 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 193
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLI+EAY +LK L+N ELA+ F EWN GEL S+L++IT DIF
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 253
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R A+
Sbjct: 254 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KVL + Q G DK I+ VR+ALY KI SYAQG + LR+ S E W+LN+
Sbjct: 313 KVLS----GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNY 365
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+A+I++ GCIIRA FL +I A NP +A+L++ P F + Q A R VV A+
Sbjct: 366 GEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQ 425
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 426 NGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/473 (50%), Positives = 324/473 (68%), Gaps = 12/473 (2%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+AVMG+NLALN+ +G+ +SV+NR+ K +E + A G+ L +YT ++FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVQEFV 73
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +G
Sbjct: 74 ESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
++G GVSGGEEG GPS+MPGG EAY + IL+++AA +DG PCVTYIG G+G++
Sbjct: 134 FIGTGVSGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHY 193
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLI+EAY +LK LSN ELA+ F EWN+GEL S+L++IT DIF
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDITKDIFTK 253
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KDE G+ LVD ILD+ KGTGKWT Q + +L I S+ RY+S LK++R A+
Sbjct: 254 KDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KVL + Q G DK I+ VR+ALY KI SYAQG + LR+ S+E W+LN+
Sbjct: 313 KVLS----GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNY 365
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+A+I++ GCIIRA FL +I AY +N +A+L++ P F + Q A R VV A+
Sbjct: 366 GEIAKIFRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQ 425
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+R D+ G FHTEW
Sbjct: 426 NGIPVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEW 478
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/478 (51%), Positives = 321/478 (67%), Gaps = 11/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGA 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA I
Sbjct: 179 GHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI 238
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+ER
Sbjct: 239 LKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+A+K LK QN+ DKK ++D+R+ALYASKI SYAQG LLR + E GW
Sbjct: 298 QASKKLKGP------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT 351
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 352 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST 411
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 412 GVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/482 (50%), Positives = 321/482 (66%), Gaps = 11/482 (2%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
++ A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G
Sbjct: 20 FQSMAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGA 77
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
+ ++ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR +
Sbjct: 78 QSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRD 137
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIG 179
KG+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G
Sbjct: 138 LKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVG 197
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
+ G+G+FVKMVHNGIEYGDMQLI EAY ++K V G++ E+A+ F++WNK EL+SFL+EI
Sbjct: 198 DEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEI 257
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
TA+I K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK
Sbjct: 258 TANILKFQDTDGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLK 316
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ER +A+K LK Q DKK ++D+R+ALYASKI SYAQG LLR + E
Sbjct: 317 DERIQASKKLKGP------QKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATE 370
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
GW LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR
Sbjct: 371 FGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRR 430
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTE 478
V + AGI P +LS++D YR LPA+L+QAQRD FGAHTYE + +PG F HT
Sbjct: 431 AVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTN 490
Query: 479 WT 480
WT
Sbjct: 491 WT 492
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/480 (50%), Positives = 321/480 (66%), Gaps = 11/480 (2%)
Query: 3 ASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYT 62
++A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G +
Sbjct: 1 SNAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQS 58
Query: 63 PRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122
++ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR +
Sbjct: 59 LKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLK 118
Query: 123 QKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEG 181
KG+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+
Sbjct: 119 AKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDE 178
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241
G+G+FVKMVHNGIEYGDMQLI EAY ++K V G++ E+A+ F++WNK EL+SFL+EITA
Sbjct: 179 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA 238
Query: 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
+I K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+E
Sbjct: 239 NILKFQDTDGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 297
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R +A+K LK Q DKK ++D+R+ALYASKI SYAQG LLR + E G
Sbjct: 298 RIQASKKLKGP------QKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG 351
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
W LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR V
Sbjct: 352 WTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAV 411
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR LPA+L+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 412 STGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWT 471
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/481 (48%), Positives = 319/481 (66%), Gaps = 18/481 (3%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
GL GLAVMGQNL LN A+ GF + YNRT SKVD L A+ + G + DF+
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFL--ANEAKGKSIIGATSIEDFIS 70
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++RPR V++LVKAG+PVD I + + GD IIDGGN + ++ RR E +KG+L+
Sbjct: 71 KLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILF 130
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+G GVSGGEEGAR+GPSLMPGGS EA+ +I++I Q ++A+ D PC ++G G+G++VK
Sbjct: 131 VGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVK 190
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI EAYD++K +GG ++ E++++F +WN G L+SFLVEIT DI K D
Sbjct: 191 MVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDD 250
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
G+ LV+KI+D G KGTGKWT A +L + I ++ R LS LK ER +A+KV
Sbjct: 251 VDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKV 309
Query: 309 LKEAGL-KDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
L + KD V+ D+++ +DD+ QALYASKI SYAQG L+R + GW LN
Sbjct: 310 LPGPEVPKDAVK------DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNP 363
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 427
+A +W+GGCIIR+VFL +I KAY+ P+L +L+ + FA + + Q+ WR+ + LA +
Sbjct: 364 AIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTY 423
Query: 428 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--------FHTEW 479
GI TP +LS++D YR RLPANL+QAQRD FGAHT+ + S H W
Sbjct: 424 GIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHINW 483
Query: 480 T 480
T
Sbjct: 484 T 484
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 285 bits (728), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 267/477 (55%), Gaps = 28/477 (5%)
Query: 20 NLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY----TPRDFVLSIQRPRS 75
NLALN+AEKGF ++V+NRT SK +E + P G+ T F S+++PR
Sbjct: 15 NLALNIAEKGFKVAVFNRTYSKSEEFM---KANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135
+ILV+AG+ D TI L + GD ++D GN + + RR + GL +LGMG+SG
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131
Query: 136 GEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNFVKMVHNGI 194
GEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G GG+G+ VKM HN
Sbjct: 132 GEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSG 191
Query: 195 EYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEITADIFKVKDEYGEG 253
EY +Q+ E +D+L+ + GL+N E+A + ++W +K L+S++++I+ + KD+ G
Sbjct: 192 EYAILQIWGEVFDILRAM-GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGS- 249
Query: 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK----VL 309
L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K ER+ A +
Sbjct: 250 YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT 309
Query: 310 KEAG--LKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
+ G LK++ + G + K+L D V A+ I YAQ LR + LN
Sbjct: 310 QSPGYTLKNKSPS-GPEI--KQLYDSVCIAI----ISCYAQMFQCLREMDKVHNFGLNLP 362
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 427
++ GCI++ L + +A+++NPN+++L+ F E+ +R +V L S
Sbjct: 363 ATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMVALITSK 420
Query: 428 -GISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+S P + ASL+Y L LV QRD+FG H YER+D+ G +W +L
Sbjct: 421 LEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 128/281 (45%), Gaps = 45/281 (16%)
Query: 51 REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110
REG + G + +F + +PR V + V A + VD + + ++ D +IDGGN
Sbjct: 63 REG---IAGARSIEEFCAKLVKPRVVWLXVPA-AVVDSXLQRXTPLLAANDIVIDGGNSH 118
Query: 111 YLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVD 170
Y + RR + +G+ Y+ +G SGG G G L GG +A + + + +A +
Sbjct: 119 YQDDIRRADQXRAQGITYVDVGTSGGIFGLERGYCLXIGGEKQAVERLDPVFRTLAPGIG 178
Query: 171 DGPCVT--------------YIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV---- 212
P + G G+G+FVK VHNGIEYG +E ++L H
Sbjct: 179 AAPRTPGREKREGTAELGYLHCGPSGAGHFVKXVHNGIEYGLXAAYAEGLNILHHANAGK 238
Query: 213 -GGLSNAE---------------LAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL 255
G ++AE LA+I + W +G + S+L++++A + D E
Sbjct: 239 EGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSAT--ALLDSPDLQEF 296
Query: 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296
++ D G G+WTV A + V A ++++L R+ S
Sbjct: 297 QGRVSD----SGEGRWTVAAAIDEGVPAHVLSSALYERFSS 333
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 26/140 (18%)
Query: 344 CSYAQGMNLLR-SKSNEKG-----------------WNLNFGELARIWKGGCIIRAVFLD 385
+YA+G+N+L + + ++G ++L+ ++ +W+ G +I + LD
Sbjct: 222 AAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLD 281
Query: 386 RIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASL-SYFDTY 444
A +P+L EF + V R V AI G+ + ++L F +
Sbjct: 282 LSATALLDSPDLQ------EF-QGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYERFSSR 334
Query: 445 RRARLPANLVQAQRDLFGAH 464
L+ A R FG H
Sbjct: 335 GEDDFANRLLSAXRYEFGGH 354
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 18/232 (7%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL +MG + N+ + G ++V+NRT K D + R G+ P T
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ P++ LV S V Q I PG C +D +G
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGI-------RPGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
+L VSG ++ + G ++ G Y + Q + G ++GE G+
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM------GKTSFFLGEVGNAAK 198
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238
+ ++ N ++ M I+E L V G S L +I N+G+L S ++
Sbjct: 199 MMLIVNMVQGSFMATIAEGL-TLAQVTGQSQQTLLDIL---NQGQLASIFLD 246
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 23/227 (10%)
Query: 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTP 63
S + +G GL +MG+ +++N+ + GF ++V+NRT SK DE ++ + P
Sbjct: 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKC 78
Query: 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA-S 122
+ + + P + + +V D+ + E + G ID + T +I+EA +
Sbjct: 79 KYTIAMLSDPCAALSVV-----FDK--GGVLEQICEGKGYID-MSTVDAETSLKINEAIT 130
Query: 123 QKGLLYLGMGVSGGEEGARHGPSLMPGGS----FEAYNNIRDILQKVAAQVDDGPCVTYI 178
KG ++ VSG ++ A G ++ FE D+L K + Y+
Sbjct: 131 GKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRS---------FYL 181
Query: 179 GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225
G+ G+G +K++ N I M SE VL GLS+ L +I D
Sbjct: 182 GQVGNGAKMKLIVNMIMGSMMNAFSEGL-VLADKSGLSSDTLLDILD 227
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 20/190 (10%)
Query: 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD 65
+ ++ GL MG +A ++A + FP V+NRT K + E +PL
Sbjct: 1 MEKVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKALRHQEEFGSEA-VPLE------- 51
Query: 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG 125
+ R + + V + AL ++ G +D + + R +KG
Sbjct: 52 ---RVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG 108
Query: 126 LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
+ YL VSGG GA G ++M GG EA +R L V GP G+G
Sbjct: 109 VTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGPV-------GAG 161
Query: 185 NFVKMVHNGI 194
+ VK ++N +
Sbjct: 162 HAVKAINNAL 171
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 18/251 (7%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL MG+ +A+N+ ++G ++VY + + A +
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEG--VTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDI 63
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ P + I+ P + G I+D + +T + A++KG+
Sbjct: 64 IFTSLPNAGIVETVMNGP-----GGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID 118
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
Y+ VSGG +GA G ++M G S + I+ +L + G + ++G+ G+G+
Sbjct: 119 YVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI------GKDIYHVGDTGAGDA 172
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VK+V+N + +M ++EA VL GL + EI K S+ +E + F +
Sbjct: 173 VKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEII---GKSSGRSYAMEAKMEKFIM 228
Query: 247 KDEYGEGELVD 257
++ G +D
Sbjct: 229 SGDFAGGFAMD 239
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 20/188 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++ GL G A ++A + FP V+NRT K + E +PL
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKALRHQEEFGSEA-VPLE--------- 51
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ R + + V + AL ++ G +D + + R +KG+
Sbjct: 52 -RVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 110
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
YL VSGG GA G ++ GG EA +R L V GP G+G+
Sbjct: 111 YLDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFLAYAKKVVHVGPV-------GAGHA 163
Query: 187 VKMVHNGI 194
VK ++N +
Sbjct: 164 VKAINNAL 171
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 100 GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNI 158
G I+D + + T+R ++ G YL VSGGE GAR G S+ GG + ++ +
Sbjct: 89 GKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDRV 148
Query: 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+ + + G +T +G G G K+ + I +++ +SEA
Sbjct: 149 KPLFDIL------GKNITLVGGNGDGQTCKVANQIIVALNIEAVSEA 189
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 24/212 (11%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL + G+ + N+ + G+ + V +R + + +
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETAST-----------A 55
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEA-S 122
+I VII SP + +A + E PG +ID + L R I +A
Sbjct: 56 KAIAEQCDVIITXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPL-ASREISDALK 114
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG+ L VSGGE A G S+ GG ++ D+ + A V + G+
Sbjct: 115 AKGVEXLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGS------VVHTGDI 168
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213
G+GN K+ + I ++ SEA + G
Sbjct: 169 GAGNVTKLANQVIVALNIAAXSEALTLATKAG 200
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
+G GL MG +A N+ + G+P+ +Y+ E D + +P D +
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQV-------VSSPAD--V 53
Query: 69 SIQRPRSVIILVKAGSPVDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
+ + R + +L + + ++ A + + + G +ID ++ E + G
Sbjct: 54 AEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA 113
Query: 127 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGN 185
+++ VSGG AR G + M GG + + +++L + G V Y G G+G
Sbjct: 114 VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCM------GSNVVYCGAVGTGQ 167
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225
K+ +N + M +EA ++ + GL LA+I +
Sbjct: 168 AAKICNNMLLAISMIGTAEAMNLGIRL-GLDPKLLAKILN 206
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
+G GL MG +A N+ + G+P+ +Y+ E D + +P D +
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVS-------SPAD--V 75
Query: 69 SIQRPRSVIILVKAGSPVDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
+ + R + +L + + ++ A + + + G +ID ++ E + G
Sbjct: 76 AEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA 135
Query: 127 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGN 185
+++ VSGG AR G + M GG + + +++L + G V Y G G+G
Sbjct: 136 VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCM------GSNVVYCGAVGTGQ 189
Query: 186 FVKMVHN 192
K+ +N
Sbjct: 190 AAKICNN 196
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 14/214 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+ G GL +MG +A N+ + G ++++NR+ K +E L TP + V
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEEL-------AALGAERAATPXEVV 55
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S +++ A V + E + G +D ++R KG
Sbjct: 56 ESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR 115
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
+L VSG ++ A G ++ G Y+ +K+ G + ++G+ G G
Sbjct: 116 FLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM------GKKIIHLGDVGKGAE 169
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220
+K+V N + G M E + + G ++A L
Sbjct: 170 MKLVVNMVMGGMMACFCEGLALGEKAGLATDAIL 203
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP 56
++ G GL +MG +A N+ GF ++V+NR +K + R+ P
Sbjct: 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSP 51
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 200 QLISEAYDVLKHVGGLSNA---ELAEIFDEWNKGELESFLVEITADIFKVKDE-----YG 251
Q + Y+ L+ G ++ + A++F WN +FL V D +
Sbjct: 204 QFFLDGYNSLRQTGSVTPVIIHDAAQVFGYWN-----NFLTVAEGQWNVVVDHHHYQVFS 258
Query: 252 EGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDC-RYLSGLK 299
GEL I D + W ++ + +VA AA DC ++L+G+
Sbjct: 259 GGELSRNINDHISVACNWGWDAKKESHWNVAGSWSAALTDCAKWLNGVN 307
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 373 WKGGCII---RAVFLDRIK-----KAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
W+ G I + VF D I + Q + +S+V+DP+ + + R A R +GL
Sbjct: 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPD-KXKFIDRLCADSRSIGLY 378
Query: 425 ISAGISTP 432
+AG+STP
Sbjct: 379 HTAGLSTP 386
>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase
From Yeast
Length = 299
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
D +K DEY +GE K+L G G G T+Q A EL I + L +
Sbjct: 24 DFYKXIDEYHDGER--KLLVDVGC-GPGTATLQXAQELKPFEQIIGSDLSATXI------ 74
Query: 302 REKAAKVLKEAGLKDEVQNVGVHV 325
K A+V+KE G D +NV +
Sbjct: 75 --KTAEVIKE-GSPDTYKNVSFKI 95
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 23/219 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+I G G A + E G+ + V+NRT + R L G
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPA----------RAASLAALGATIHEQAR 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEA--SQ 123
+ + V+ ++ G+ V + A ++ PG +D + E R H A
Sbjct: 83 AAARDADIVVSXLENGAVVQDVLFAQGVAAAXKPGSLFLDXAS--ITPREARDHAARLGA 140
Query: 124 KGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGS 183
G+ +L VSGG GA G ++ G A L KV + T++G GS
Sbjct: 141 LGIAHLDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRA------THVGPHGS 194
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222
G K+ + I + ++EA + GG A++ E
Sbjct: 195 GQLTKLANQXIVGITIGAVAEAL-LFATKGGADXAKVKE 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,399,650
Number of Sequences: 62578
Number of extensions: 669455
Number of successful extensions: 1793
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 38
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)