Query 010652
Match_columns 505
No_of_seqs 440 out of 3970
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 9E-140 2E-144 1033.7 47.4 470 5-483 2-471 (473)
2 KOG2653 6-phosphogluconate deh 100.0 9E-130 2E-134 946.9 42.2 477 1-485 1-479 (487)
3 PTZ00142 6-phosphogluconate de 100.0 3E-118 6E-123 943.2 50.7 468 7-480 2-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 8E-117 2E-121 932.4 52.8 483 1-485 1-484 (493)
5 PRK09287 6-phosphogluconate de 100.0 2E-116 4E-121 925.9 49.4 454 17-481 1-457 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 2E-115 5E-120 921.0 51.4 463 8-480 1-466 (467)
7 PF00393 6PGD: 6-phosphoglucon 100.0 3E-90 6.5E-95 675.3 27.4 291 184-480 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 2.7E-60 6E-65 441.4 26.1 298 7-469 1-299 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 5.8E-56 1.2E-60 447.6 34.4 295 7-468 1-297 (298)
10 PRK09599 6-phosphogluconate de 100.0 4.8E-48 1E-52 390.7 35.7 299 7-469 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.3E-46 2.9E-51 369.9 28.8 256 7-289 1-261 (286)
12 PRK12490 6-phosphogluconate de 100.0 5.2E-45 1.1E-49 368.2 34.4 207 7-223 1-208 (299)
13 KOG0409 Predicted dehydrogenas 100.0 5.6E-43 1.2E-47 337.4 25.8 263 6-296 35-302 (327)
14 PRK15059 tartronate semialdehy 100.0 2E-40 4.3E-45 333.1 28.5 261 7-296 1-265 (292)
15 PRK15461 NADH-dependent gamma- 100.0 2.8E-39 6E-44 325.9 28.6 263 7-297 2-269 (296)
16 TIGR01692 HIBADH 3-hydroxyisob 100.0 3.4E-38 7.4E-43 317.0 28.1 259 11-296 1-269 (288)
17 PLN02858 fructose-bisphosphate 100.0 3E-37 6.4E-42 361.0 30.2 263 6-296 4-273 (1378)
18 PRK11559 garR tartronate semia 100.0 1.5E-36 3.1E-41 306.4 29.8 263 6-296 2-268 (296)
19 TIGR01505 tartro_sem_red 2-hyd 100.0 2.7E-36 5.8E-41 303.8 29.3 262 8-297 1-266 (291)
20 PLN02858 fructose-bisphosphate 100.0 1.7E-35 3.7E-40 346.3 29.5 266 5-298 323-595 (1378)
21 PF03446 NAD_binding_2: NAD bi 100.0 2.1E-31 4.6E-36 245.5 14.1 159 6-180 1-163 (163)
22 TIGR03026 NDP-sugDHase nucleot 100.0 4.6E-28 9.9E-33 255.2 22.4 251 7-289 1-289 (411)
23 PRK11064 wecC UDP-N-acetyl-D-m 99.9 1.9E-24 4E-29 227.4 22.0 206 6-224 3-247 (415)
24 PRK15182 Vi polysaccharide bio 99.9 9E-24 1.9E-28 222.3 24.7 249 5-289 5-286 (425)
25 PRK14618 NAD(P)H-dependent gly 99.9 4.9E-24 1.1E-28 218.2 16.0 282 6-310 4-322 (328)
26 PRK00094 gpsA NAD(P)H-dependen 99.9 2.1E-23 4.6E-28 212.9 19.2 282 7-308 2-322 (325)
27 PRK15057 UDP-glucose 6-dehydro 99.9 4.7E-23 1E-27 214.4 20.3 200 7-224 1-232 (388)
28 PRK06129 3-hydroxyacyl-CoA deh 99.9 5.9E-22 1.3E-26 201.1 22.7 250 7-290 3-273 (308)
29 PF00393 6PGD: 6-phosphoglucon 99.9 4.1E-23 8.9E-28 202.8 9.2 118 328-450 1-120 (291)
30 PRK14619 NAD(P)H-dependent gly 99.9 6.9E-22 1.5E-26 200.6 15.6 261 6-311 4-301 (308)
31 COG0362 Gnd 6-phosphogluconate 99.8 7.6E-22 1.6E-26 196.7 6.4 121 324-449 175-298 (473)
32 COG1023 Gnd Predicted 6-phosph 99.8 1.8E-20 4E-25 175.5 14.7 199 64-301 78-278 (300)
33 PRK12557 H(2)-dependent methyl 99.8 2.6E-19 5.7E-24 183.0 22.2 197 7-224 1-236 (342)
34 COG0677 WecC UDP-N-acetyl-D-ma 99.8 2.1E-19 4.6E-24 180.3 20.0 207 5-224 8-250 (436)
35 KOG2653 6-phosphogluconate deh 99.8 1.4E-20 3.1E-25 184.6 7.4 122 324-450 179-302 (487)
36 COG1004 Ugd Predicted UDP-gluc 99.8 5E-18 1.1E-22 171.3 25.7 254 7-290 1-288 (414)
37 PRK07531 bifunctional 3-hydrox 99.8 6.1E-19 1.3E-23 189.8 20.4 194 6-225 4-218 (495)
38 PLN02353 probable UDP-glucose 99.8 8.2E-18 1.8E-22 178.8 26.4 254 6-289 1-299 (473)
39 PRK09260 3-hydroxybutyryl-CoA 99.8 1.9E-18 4.1E-23 173.8 19.5 193 7-225 2-218 (288)
40 PLN02688 pyrroline-5-carboxyla 99.8 2.2E-17 4.7E-22 164.1 24.4 236 7-288 1-252 (266)
41 PRK08229 2-dehydropantoate 2-r 99.8 2.2E-17 4.7E-22 170.0 21.0 262 5-289 1-309 (341)
42 PRK07819 3-hydroxybutyryl-CoA 99.8 2.2E-17 4.8E-22 165.7 20.1 200 1-225 1-223 (286)
43 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.8E-17 3.9E-22 178.4 20.6 189 6-225 7-223 (507)
44 PRK07679 pyrroline-5-carboxyla 99.8 2.2E-17 4.8E-22 165.3 19.8 185 6-226 3-208 (279)
45 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 3.9E-17 8.5E-22 175.3 19.0 191 6-225 5-221 (503)
46 PRK07417 arogenate dehydrogena 99.7 2.5E-17 5.4E-22 164.9 16.0 177 7-203 1-190 (279)
47 COG0240 GpsA Glycerol-3-phosph 99.7 1.7E-16 3.6E-21 158.4 17.5 288 6-309 1-322 (329)
48 PRK08507 prephenate dehydrogen 99.7 2.6E-16 5.6E-21 157.3 19.1 190 7-223 1-205 (275)
49 PRK07066 3-hydroxybutyryl-CoA 99.7 3.4E-16 7.3E-21 158.6 19.7 194 6-225 7-221 (321)
50 PRK06130 3-hydroxybutyryl-CoA 99.7 6E-16 1.3E-20 157.3 21.2 196 5-225 3-217 (311)
51 PRK07530 3-hydroxybutyryl-CoA 99.7 6.8E-16 1.5E-20 155.6 19.9 192 6-224 4-219 (292)
52 PLN02545 3-hydroxybutyryl-CoA 99.7 8.5E-16 1.9E-20 155.1 18.8 192 6-224 4-219 (295)
53 PRK06035 3-hydroxyacyl-CoA deh 99.7 1.1E-15 2.4E-20 153.9 18.7 194 6-225 3-222 (291)
54 PRK08293 3-hydroxybutyryl-CoA 99.7 7.9E-15 1.7E-19 147.5 22.1 196 6-224 3-221 (287)
55 PRK05808 3-hydroxybutyryl-CoA 99.7 6.1E-15 1.3E-19 147.9 19.8 192 6-225 3-219 (282)
56 PRK11199 tyrA bifunctional cho 99.7 3.1E-15 6.8E-20 155.6 17.8 178 6-222 98-279 (374)
57 PRK07680 late competence prote 99.7 4.2E-14 9.2E-19 141.1 25.3 194 7-225 1-203 (273)
58 PRK12439 NAD(P)H-dependent gly 99.6 1.5E-14 3.2E-19 148.9 21.1 291 5-312 6-331 (341)
59 PRK08655 prephenate dehydrogen 99.6 1.4E-14 3E-19 153.6 21.4 194 7-222 1-200 (437)
60 PTZ00142 6-phosphogluconate de 99.6 3.9E-16 8.4E-21 165.9 9.2 118 325-450 175-298 (470)
61 PRK07502 cyclohexadienyl dehyd 99.6 1.1E-14 2.4E-19 147.8 18.3 168 1-184 1-183 (307)
62 PTZ00345 glycerol-3-phosphate 99.6 6.7E-15 1.4E-19 151.6 16.5 290 6-311 11-356 (365)
63 PRK12921 2-dehydropantoate 2-r 99.6 4.2E-14 9.1E-19 143.2 20.5 255 7-289 1-293 (305)
64 PRK06476 pyrroline-5-carboxyla 99.6 2.7E-13 5.8E-18 134.3 25.8 234 7-287 1-244 (258)
65 TIGR00873 gnd 6-phosphoglucona 99.6 1.2E-15 2.6E-20 162.2 8.8 120 325-450 172-294 (467)
66 PRK11880 pyrroline-5-carboxyla 99.6 3.1E-13 6.6E-18 134.4 25.3 242 6-287 2-252 (267)
67 TIGR03376 glycerol3P_DH glycer 99.6 2.4E-14 5.2E-19 146.5 16.5 282 8-303 1-337 (342)
68 TIGR01724 hmd_rel H2-forming N 99.6 1.2E-13 2.6E-18 136.8 20.8 190 7-216 1-229 (341)
69 PRK09287 6-phosphogluconate de 99.6 2.4E-15 5.1E-20 159.3 8.9 118 325-450 164-287 (459)
70 PRK14620 NAD(P)H-dependent gly 99.6 1.8E-13 3.9E-18 140.1 21.7 275 7-304 1-320 (326)
71 PRK06522 2-dehydropantoate 2-r 99.6 1.1E-13 2.5E-18 139.8 19.0 254 7-288 1-289 (304)
72 PRK12491 pyrroline-5-carboxyla 99.6 1.6E-12 3.6E-17 129.5 26.3 187 6-225 2-205 (272)
73 PRK08269 3-hydroxybutyryl-CoA 99.6 1E-13 2.2E-18 140.8 17.3 178 17-225 1-216 (314)
74 PF03721 UDPG_MGDP_dh_N: UDP-g 99.5 6.8E-14 1.5E-18 131.4 13.4 149 7-160 1-184 (185)
75 PRK06545 prephenate dehydrogen 99.5 4.7E-13 1E-17 138.7 18.9 171 7-191 1-185 (359)
76 COG1250 FadB 3-hydroxyacyl-CoA 99.5 6.2E-13 1.3E-17 132.9 17.2 192 6-225 3-219 (307)
77 PRK06249 2-dehydropantoate 2-r 99.5 1.9E-12 4.1E-17 131.8 21.0 254 5-289 4-301 (313)
78 PLN02256 arogenate dehydrogena 99.4 1.2E-11 2.6E-16 125.0 20.9 158 6-181 36-205 (304)
79 COG0287 TyrA Prephenate dehydr 99.4 4.4E-12 9.5E-17 126.2 17.2 161 5-181 2-172 (279)
80 PLN02712 arogenate dehydrogena 99.4 5E-12 1.1E-16 140.1 17.0 158 5-181 368-538 (667)
81 PRK11730 fadB multifunctional 99.4 1E-11 2.2E-16 139.3 18.4 191 6-225 313-528 (715)
82 TIGR02441 fa_ox_alpha_mit fatt 99.4 7.6E-12 1.6E-16 140.4 17.4 193 6-227 335-552 (737)
83 TIGR01915 npdG NADPH-dependent 99.4 4.6E-12 1E-16 122.4 13.6 161 7-181 1-190 (219)
84 TIGR02437 FadB fatty oxidation 99.4 1.1E-11 2.4E-16 138.8 18.5 191 6-225 313-528 (714)
85 TIGR02440 FadJ fatty oxidation 99.4 1.7E-11 3.7E-16 137.2 19.1 191 6-225 304-520 (699)
86 PRK07634 pyrroline-5-carboxyla 99.4 7E-11 1.5E-15 115.9 21.2 193 6-225 4-207 (245)
87 PF03807 F420_oxidored: NADP o 99.4 3.5E-12 7.5E-17 106.6 10.2 90 8-108 1-95 (96)
88 COG0345 ProC Pyrroline-5-carbo 99.4 2.4E-10 5.2E-15 112.3 24.4 192 6-224 1-201 (266)
89 PF02737 3HCDH_N: 3-hydroxyacy 99.4 3.6E-12 7.7E-17 119.3 10.7 152 8-179 1-178 (180)
90 PRK06928 pyrroline-5-carboxyla 99.4 3E-10 6.5E-15 113.7 25.0 146 7-167 2-156 (277)
91 PRK05708 2-dehydropantoate 2-r 99.4 2.7E-11 5.8E-16 122.9 17.3 256 6-289 2-289 (305)
92 PF14833 NAD_binding_11: NAD-b 99.3 3.8E-12 8.3E-17 111.5 9.6 103 182-296 1-104 (122)
93 PRK11154 fadJ multifunctional 99.3 2.6E-11 5.7E-16 135.9 18.2 192 6-225 309-525 (708)
94 PRK14806 bifunctional cyclohex 99.3 2.8E-11 6E-16 137.1 18.6 161 6-181 3-178 (735)
95 PF01210 NAD_Gly3P_dh_N: NAD-d 99.3 1E-11 2.2E-16 113.7 11.3 99 8-110 1-106 (157)
96 PLN02350 phosphogluconate dehy 99.3 6.1E-12 1.3E-16 134.2 11.2 119 325-451 181-305 (493)
97 COG2085 Predicted dinucleotide 99.3 2.5E-11 5.4E-16 113.9 13.2 164 6-185 1-185 (211)
98 PRK05479 ketol-acid reductoiso 99.3 1.2E-10 2.5E-15 118.2 18.3 196 6-220 17-224 (330)
99 COG1893 ApbA Ketopantoate redu 99.3 3.3E-10 7.1E-15 114.7 19.8 254 7-288 1-291 (307)
100 PTZ00431 pyrroline carboxylate 99.3 1.9E-09 4.1E-14 106.9 24.4 232 7-286 4-246 (260)
101 PLN02712 arogenate dehydrogena 99.3 7.9E-11 1.7E-15 130.7 15.8 158 6-181 52-221 (667)
102 PRK08818 prephenate dehydrogen 99.3 1.4E-10 3E-15 119.8 16.4 145 6-182 4-157 (370)
103 PF10727 Rossmann-like: Rossma 99.2 9.4E-12 2E-16 109.2 5.9 110 6-128 10-122 (127)
104 KOG2304 3-hydroxyacyl-CoA dehy 99.1 2.8E-10 6.1E-15 106.6 10.7 195 6-225 11-233 (298)
105 PRK07574 formate dehydrogenase 99.1 2E-09 4.3E-14 111.9 15.9 113 7-129 193-306 (385)
106 PRK12480 D-lactate dehydrogena 99.1 9.7E-10 2.1E-14 112.5 13.3 117 7-137 147-264 (330)
107 PLN03139 formate dehydrogenase 99.1 3.6E-09 7.8E-14 109.9 16.1 118 7-134 200-318 (386)
108 TIGR00745 apbA_panE 2-dehydrop 99.1 1.1E-08 2.4E-13 102.7 18.9 244 17-289 2-283 (293)
109 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 5.4E-09 1.2E-13 99.5 14.3 137 7-161 29-168 (200)
110 PRK13243 glyoxylate reductase; 99.0 2.7E-09 6E-14 109.4 12.5 117 7-135 151-268 (333)
111 PF02153 PDH: Prephenate dehyd 99.0 9.6E-09 2.1E-13 101.8 15.1 143 21-180 1-158 (258)
112 TIGR00465 ilvC ketol-acid redu 99.0 1.7E-08 3.7E-13 102.5 17.1 146 7-167 4-160 (314)
113 KOG2305 3-hydroxyacyl-CoA dehy 99.0 1E-08 2.2E-13 96.3 13.8 203 6-234 3-228 (313)
114 PRK08605 D-lactate dehydrogena 99.0 5.7E-09 1.2E-13 107.1 12.4 110 7-129 147-258 (332)
115 KOG2666 UDP-glucose/GDP-mannos 99.0 8E-08 1.7E-12 94.3 19.5 204 6-224 1-251 (481)
116 PRK06436 glycerate dehydrogena 98.9 4.6E-09 9.9E-14 106.1 11.3 115 7-136 123-238 (303)
117 cd01065 NAD_bind_Shikimate_DH 98.9 2.9E-09 6.4E-14 96.7 8.8 118 6-131 19-138 (155)
118 PRK15469 ghrA bifunctional gly 98.9 4.5E-09 9.7E-14 106.8 10.7 116 7-134 137-253 (312)
119 PF02826 2-Hacid_dh_C: D-isome 98.9 6E-09 1.3E-13 97.4 10.8 112 7-129 37-149 (178)
120 PRK13302 putative L-aspartate 98.9 1.6E-08 3.4E-13 100.8 12.5 125 1-137 1-129 (271)
121 PRK13403 ketol-acid reductoiso 98.8 1.7E-08 3.7E-13 101.3 10.9 186 7-219 17-221 (335)
122 TIGR01327 PGDH D-3-phosphoglyc 98.8 3.7E-08 8E-13 107.1 11.8 112 7-129 139-251 (525)
123 PLN02928 oxidoreductase family 98.8 8.4E-08 1.8E-12 98.9 13.7 122 7-135 160-290 (347)
124 PRK13581 D-3-phosphoglycerate 98.8 5E-08 1.1E-12 106.1 11.8 109 7-127 141-250 (526)
125 PF07991 IlvN: Acetohydroxy ac 98.8 4.7E-08 1E-12 88.3 9.6 90 6-107 4-95 (165)
126 PRK00257 erythronate-4-phospha 98.7 5.1E-08 1.1E-12 101.3 9.9 116 7-137 117-237 (381)
127 KOG2380 Prephenate dehydrogena 98.7 1.9E-07 4.2E-12 92.5 12.7 149 7-167 53-213 (480)
128 COG0111 SerA Phosphoglycerate 98.7 1E-07 2.3E-12 97.0 11.2 110 7-127 143-253 (324)
129 PRK08410 2-hydroxyacid dehydro 98.7 1.5E-07 3.2E-12 95.8 11.4 115 7-137 146-261 (311)
130 PRK11790 D-3-phosphoglycerate 98.7 1.5E-07 3.2E-12 99.2 11.5 114 7-134 152-266 (409)
131 COG1052 LdhA Lactate dehydroge 98.6 2.8E-07 6E-12 93.9 12.6 118 7-136 147-265 (324)
132 PRK15409 bifunctional glyoxyla 98.6 5.1E-07 1.1E-11 92.2 14.4 109 7-127 146-256 (323)
133 TIGR02853 spore_dpaA dipicolin 98.6 2.1E-07 4.6E-12 93.5 10.7 111 7-132 152-262 (287)
134 PRK06487 glycerate dehydrogena 98.6 5E-07 1.1E-11 92.1 13.5 105 7-128 149-254 (317)
135 PRK13304 L-aspartate dehydroge 98.6 4.4E-07 9.4E-12 90.3 12.7 119 7-138 2-127 (265)
136 TIGR00112 proC pyrroline-5-car 98.6 1.4E-05 2.9E-10 78.7 22.6 171 29-225 9-185 (245)
137 PRK06932 glycerate dehydrogena 98.6 4.4E-07 9.5E-12 92.4 12.4 112 7-134 148-260 (314)
138 PRK15438 erythronate-4-phospha 98.6 2.1E-07 4.6E-12 96.4 9.9 116 7-137 117-237 (378)
139 COG4007 Predicted dehydrogenas 98.6 3.3E-06 7.2E-11 80.9 16.4 199 6-220 1-234 (340)
140 PRK06141 ornithine cyclodeamin 98.5 2.8E-07 6.1E-12 93.9 9.2 115 7-131 126-242 (314)
141 PRK14194 bifunctional 5,10-met 98.5 3E-07 6.4E-12 92.0 8.1 74 7-110 160-234 (301)
142 PLN02306 hydroxypyruvate reduc 98.5 1.6E-06 3.5E-11 90.4 12.7 128 7-137 166-302 (386)
143 PF02558 ApbA: Ketopantoate re 98.4 1.4E-06 3.1E-11 78.7 9.3 107 9-121 1-114 (151)
144 PF01408 GFO_IDH_MocA: Oxidore 98.4 9.5E-06 2.1E-10 70.2 13.2 112 7-128 1-116 (120)
145 PRK08306 dipicolinate synthase 98.3 2.4E-06 5.3E-11 86.3 10.5 111 6-131 152-262 (296)
146 KOG0069 Glyoxylate/hydroxypyru 98.3 4.4E-06 9.5E-11 84.6 12.1 108 6-124 162-270 (336)
147 TIGR00507 aroE shikimate 5-deh 98.3 2E-06 4.2E-11 85.9 9.1 116 7-130 118-235 (270)
148 PRK06444 prephenate dehydrogen 98.3 4.2E-05 9.1E-10 72.5 16.1 116 7-182 1-123 (197)
149 PRK14188 bifunctional 5,10-met 98.3 2.5E-06 5.5E-11 85.5 8.1 73 7-110 159-233 (296)
150 cd05213 NAD_bind_Glutamyl_tRNA 98.3 5.4E-06 1.2E-10 84.4 10.6 95 6-108 178-274 (311)
151 COG1748 LYS9 Saccharopine dehy 98.2 1.8E-05 3.9E-10 82.0 14.2 126 6-138 1-130 (389)
152 TIGR00872 gnd_rel 6-phosphoglu 98.2 6.4E-06 1.4E-10 83.4 9.6 110 178-299 164-275 (298)
153 PF01488 Shikimate_DH: Shikima 98.2 4.8E-06 1E-10 74.2 7.5 101 6-114 12-114 (135)
154 PRK06223 malate dehydrogenase; 98.1 1.7E-05 3.6E-10 80.7 10.9 101 6-111 2-123 (307)
155 TIGR02371 ala_DH_arch alanine 98.1 1.4E-05 3.1E-10 81.8 9.9 96 7-111 129-226 (325)
156 PRK14179 bifunctional 5,10-met 98.1 9.6E-06 2.1E-10 80.7 7.4 74 7-110 159-233 (284)
157 COG0059 IlvC Ketol-acid reduct 98.0 1.9E-05 4E-10 77.9 9.2 87 7-105 19-107 (338)
158 COG1712 Predicted dinucleotide 98.0 5.2E-05 1.1E-09 71.8 11.7 112 7-129 1-115 (255)
159 COG0569 TrkA K+ transport syst 98.0 8.9E-05 1.9E-09 71.9 12.4 98 7-109 1-103 (225)
160 PF01113 DapB_N: Dihydrodipico 98.0 3.7E-05 8.1E-10 67.4 8.6 107 7-124 1-115 (124)
161 TIGR01763 MalateDH_bact malate 98.0 5.8E-05 1.3E-09 76.6 11.2 100 7-111 2-122 (305)
162 smart00859 Semialdhyde_dh Semi 97.9 2.8E-05 6E-10 67.8 7.6 98 8-110 1-102 (122)
163 PTZ00082 L-lactate dehydrogena 97.9 0.0001 2.2E-09 75.3 12.5 105 1-110 1-131 (321)
164 PLN00203 glutamyl-tRNA reducta 97.9 5.4E-05 1.2E-09 81.9 10.0 99 6-108 266-370 (519)
165 TIGR01921 DAP-DH diaminopimela 97.9 0.00012 2.6E-09 74.3 11.5 87 6-108 3-92 (324)
166 PRK05225 ketol-acid reductoiso 97.9 3E-05 6.5E-10 81.1 7.2 194 7-221 37-250 (487)
167 PF00670 AdoHcyase_NAD: S-aden 97.9 8.5E-05 1.8E-09 67.7 9.2 91 7-111 24-114 (162)
168 PRK06407 ornithine cyclodeamin 97.9 9.4E-05 2E-09 74.9 10.6 116 7-131 118-236 (301)
169 PRK09310 aroDE bifunctional 3- 97.8 6.5E-05 1.4E-09 80.9 9.8 105 7-130 333-437 (477)
170 PRK08618 ornithine cyclodeamin 97.8 0.00011 2.3E-09 75.4 10.9 116 7-131 128-245 (325)
171 PRK07340 ornithine cyclodeamin 97.8 0.0001 2.3E-09 74.7 10.6 113 7-131 126-240 (304)
172 cd05292 LDH_2 A subgroup of L- 97.8 0.00022 4.7E-09 72.6 12.7 97 7-108 1-117 (308)
173 TIGR01035 hemA glutamyl-tRNA r 97.8 8.6E-05 1.9E-09 78.7 10.1 94 7-107 181-277 (417)
174 PRK13301 putative L-aspartate 97.8 0.00019 4E-09 70.6 11.4 119 6-138 2-128 (267)
175 TIGR00518 alaDH alanine dehydr 97.8 7.8E-05 1.7E-09 77.7 9.3 98 7-108 168-268 (370)
176 PTZ00075 Adenosylhomocysteinas 97.8 9.4E-05 2E-09 78.5 9.9 89 7-110 255-344 (476)
177 TIGR00936 ahcY adenosylhomocys 97.8 0.0002 4.4E-09 75.0 12.1 100 7-121 196-297 (406)
178 cd01339 LDH-like_MDH L-lactate 97.8 0.00014 3E-09 73.8 10.0 97 9-110 1-118 (300)
179 PRK06823 ornithine cyclodeamin 97.8 0.00018 4E-09 73.3 10.9 115 7-131 129-246 (315)
180 PRK00045 hemA glutamyl-tRNA re 97.8 7.8E-05 1.7E-09 79.2 8.6 94 7-108 183-281 (423)
181 cd05297 GH4_alpha_glucosidase_ 97.7 0.00015 3.2E-09 77.1 10.4 74 7-83 1-85 (423)
182 PF02254 TrkA_N: TrkA-N domain 97.7 0.00045 9.8E-09 59.3 11.0 111 9-129 1-113 (116)
183 TIGR02992 ectoine_eutC ectoine 97.7 0.00021 4.6E-09 73.3 10.2 96 7-110 130-227 (326)
184 PLN02819 lysine-ketoglutarate 97.7 0.00057 1.2E-08 79.2 14.5 122 6-134 569-706 (1042)
185 KOG2711 Glycerol-3-phosphate d 97.7 0.0004 8.7E-09 69.7 11.5 102 6-111 21-143 (372)
186 PRK00258 aroE shikimate 5-dehy 97.7 0.00011 2.4E-09 73.7 7.7 116 7-129 124-241 (278)
187 PRK08291 ectoine utilization p 97.7 0.00032 7E-09 72.1 11.1 96 7-110 133-230 (330)
188 cd01483 E1_enzyme_family Super 97.7 0.00029 6.4E-09 63.1 9.6 122 8-135 1-124 (143)
189 PRK13303 L-aspartate dehydroge 97.7 0.00045 9.8E-09 68.7 11.7 118 7-138 2-127 (265)
190 PRK05476 S-adenosyl-L-homocyst 97.6 0.0003 6.6E-09 74.1 10.7 90 7-111 213-303 (425)
191 TIGR01809 Shik-DH-AROM shikima 97.6 0.00051 1.1E-08 69.0 11.9 119 7-129 126-251 (282)
192 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.0004 8.7E-09 65.6 10.5 101 7-110 29-132 (194)
193 PF03435 Saccharop_dh: Sacchar 97.6 0.00073 1.6E-08 70.9 13.4 122 9-138 1-129 (386)
194 COG0673 MviM Predicted dehydro 97.6 0.00069 1.5E-08 69.4 13.0 113 5-128 2-121 (342)
195 PRK12549 shikimate 5-dehydroge 97.6 0.00018 3.9E-09 72.3 8.2 118 7-130 128-248 (284)
196 PLN02494 adenosylhomocysteinas 97.6 0.00041 8.8E-09 73.6 11.1 97 7-118 255-353 (477)
197 PTZ00117 malate dehydrogenase; 97.6 0.00061 1.3E-08 69.7 12.1 100 6-110 5-125 (319)
198 PRK00048 dihydrodipicolinate r 97.6 0.00037 8.1E-09 69.0 10.2 99 7-119 2-104 (257)
199 PRK10669 putative cation:proto 97.6 0.00073 1.6E-08 74.5 13.5 116 7-132 418-535 (558)
200 COG2423 Predicted ornithine cy 97.6 0.00038 8.2E-09 71.0 10.3 118 7-132 131-250 (330)
201 cd05291 HicDH_like L-2-hydroxy 97.5 0.00084 1.8E-08 68.2 12.2 98 7-109 1-119 (306)
202 COG0373 HemA Glutamyl-tRNA red 97.5 0.00045 9.7E-09 72.2 10.3 95 6-108 178-275 (414)
203 TIGR01761 thiaz-red thiazoliny 97.5 0.001 2.2E-08 68.5 12.8 111 6-129 3-119 (343)
204 PRK03659 glutathione-regulated 97.5 0.001 2.3E-08 73.8 13.7 114 6-129 400-515 (601)
205 PRK06046 alanine dehydrogenase 97.5 0.0005 1.1E-08 70.5 10.1 115 7-131 130-246 (326)
206 TIGR00036 dapB dihydrodipicoli 97.5 0.00099 2.2E-08 66.3 11.9 115 7-129 2-122 (266)
207 PRK03562 glutathione-regulated 97.5 0.0015 3.3E-08 72.8 14.5 117 6-132 400-518 (621)
208 cd00401 AdoHcyase S-adenosyl-L 97.5 0.0006 1.3E-08 71.8 10.5 88 7-109 203-291 (413)
209 PF02423 OCD_Mu_crystall: Orni 97.5 0.0004 8.7E-09 70.8 8.8 97 7-112 129-229 (313)
210 PF13380 CoA_binding_2: CoA bi 97.5 0.00024 5.2E-09 61.6 6.0 105 7-132 1-109 (116)
211 PF00056 Ldh_1_N: lactate/mala 97.5 0.0013 2.8E-08 59.1 10.8 98 7-109 1-120 (141)
212 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0063 1.4E-07 58.7 15.7 175 6-224 23-211 (217)
213 PRK07589 ornithine cyclodeamin 97.4 0.00097 2.1E-08 68.7 10.8 117 7-131 130-248 (346)
214 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00063 1.4E-08 62.9 8.1 74 7-110 45-119 (168)
215 PRK11579 putative oxidoreducta 97.4 0.0025 5.3E-08 65.9 13.5 110 6-128 4-118 (346)
216 KOG2741 Dimeric dihydrodiol de 97.4 0.0027 5.8E-08 64.2 12.9 124 1-131 1-129 (351)
217 cd00650 LDH_MDH_like NAD-depen 97.4 0.00083 1.8E-08 66.7 9.4 98 9-110 1-122 (263)
218 PF01118 Semialdhyde_dh: Semia 97.4 0.00069 1.5E-08 59.0 7.8 95 8-110 1-100 (121)
219 PRK04148 hypothetical protein; 97.4 0.0013 2.7E-08 58.3 9.4 99 7-112 18-116 (134)
220 PRK00066 ldh L-lactate dehydro 97.3 0.0029 6.4E-08 64.5 13.0 99 5-108 5-123 (315)
221 PRK09496 trkA potassium transp 97.3 0.0021 4.6E-08 68.7 12.5 98 7-108 1-101 (453)
222 PRK13940 glutamyl-tRNA reducta 97.3 0.00047 1E-08 72.8 7.2 74 7-86 182-256 (414)
223 COG5495 Uncharacterized conser 97.3 0.001 2.2E-08 63.3 8.2 190 6-219 10-207 (289)
224 cd05293 LDH_1 A subgroup of L- 97.3 0.0031 6.8E-08 64.2 12.5 99 6-109 3-122 (312)
225 COG0686 Ald Alanine dehydrogen 97.2 0.0013 2.7E-08 65.5 8.7 98 6-107 168-268 (371)
226 KOG0068 D-3-phosphoglycerate d 97.2 0.0018 4E-08 64.9 9.9 105 7-123 147-252 (406)
227 PRK00436 argC N-acetyl-gamma-g 97.2 0.001 2.3E-08 68.7 8.6 100 6-112 2-104 (343)
228 PF14833 NAD_binding_11: NAD-b 97.2 0.013 2.9E-07 50.9 14.3 102 326-442 1-103 (122)
229 cd00300 LDH_like L-lactate deh 97.2 0.0031 6.7E-08 63.9 11.7 96 9-109 1-117 (300)
230 cd01076 NAD_bind_1_Glu_DH NAD( 97.2 0.0028 6.1E-08 61.6 10.6 116 5-130 30-157 (227)
231 PRK06270 homoserine dehydrogen 97.2 0.003 6.5E-08 65.2 11.5 131 6-137 2-157 (341)
232 PRK06199 ornithine cyclodeamin 97.2 0.0018 3.8E-08 67.8 9.7 97 7-108 156-260 (379)
233 TIGR02354 thiF_fam2 thiamine b 97.2 0.0032 7E-08 59.9 10.4 33 6-38 21-54 (200)
234 COG2910 Putative NADH-flavin r 97.1 0.002 4.3E-08 59.6 8.3 72 7-83 1-73 (211)
235 PF01262 AlaDh_PNT_C: Alanine 97.1 0.00063 1.4E-08 62.9 5.2 99 6-108 20-140 (168)
236 cd05294 LDH-like_MDH_nadp A la 97.1 0.0022 4.7E-08 65.3 9.6 103 7-114 1-128 (309)
237 PRK08300 acetaldehyde dehydrog 97.1 0.0047 1E-07 62.2 11.5 95 6-110 4-104 (302)
238 KOG3124 Pyrroline-5-carboxylat 97.1 0.0054 1.2E-07 59.5 11.2 145 7-167 1-154 (267)
239 PRK15076 alpha-galactosidase; 97.1 0.0029 6.2E-08 67.4 10.0 74 7-83 2-86 (431)
240 PRK09496 trkA potassium transp 97.1 0.008 1.7E-07 64.2 13.6 114 6-129 231-347 (453)
241 TIGR00561 pntA NAD(P) transhyd 97.0 0.0027 5.9E-08 68.4 9.7 100 7-109 165-286 (511)
242 TIGR01850 argC N-acetyl-gamma- 97.0 0.0022 4.8E-08 66.3 8.4 98 7-111 1-103 (346)
243 PF13460 NAD_binding_10: NADH( 97.0 0.0046 1E-07 57.2 9.7 68 9-83 1-71 (183)
244 PRK02318 mannitol-1-phosphate 97.0 0.0037 8E-08 65.5 10.0 104 7-111 1-126 (381)
245 PF00984 UDPG_MGDP_dh: UDP-glu 97.0 0.0056 1.2E-07 51.1 9.0 88 183-290 3-90 (96)
246 cd05311 NAD_bind_2_malic_enz N 97.0 0.0054 1.2E-07 59.6 10.2 106 7-127 26-145 (226)
247 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0079 1.7E-07 60.3 11.2 93 7-110 2-98 (285)
248 PRK04207 glyceraldehyde-3-phos 96.9 0.0079 1.7E-07 62.1 11.4 97 6-109 1-111 (341)
249 cd05191 NAD_bind_amino_acid_DH 96.9 0.0049 1.1E-07 50.3 7.9 63 6-107 23-86 (86)
250 PRK06349 homoserine dehydrogen 96.9 0.0052 1.1E-07 65.4 10.1 120 6-136 3-135 (426)
251 PRK01710 murD UDP-N-acetylmura 96.8 0.011 2.4E-07 63.6 12.4 114 7-128 15-146 (458)
252 PRK14175 bifunctional 5,10-met 96.8 0.0046 9.9E-08 61.9 8.6 74 7-110 159-233 (286)
253 PRK10206 putative oxidoreducta 96.8 0.013 2.7E-07 60.7 12.0 112 7-129 2-119 (344)
254 PF02629 CoA_binding: CoA bind 96.8 0.0016 3.5E-08 54.3 4.4 80 6-95 3-84 (96)
255 PRK14189 bifunctional 5,10-met 96.8 0.0041 8.9E-08 62.1 7.6 74 7-110 159-233 (285)
256 PRK09424 pntA NAD(P) transhydr 96.8 0.0089 1.9E-07 64.6 10.7 44 7-50 166-209 (509)
257 COG0169 AroE Shikimate 5-dehyd 96.7 0.0065 1.4E-07 60.8 8.9 117 7-130 127-247 (283)
258 PLN02602 lactate dehydrogenase 96.7 0.017 3.8E-07 59.7 12.2 98 7-109 38-156 (350)
259 PRK00961 H(2)-dependent methyl 96.7 0.067 1.4E-06 52.5 15.2 146 56-216 128-278 (342)
260 COG0771 MurD UDP-N-acetylmuram 96.7 0.0084 1.8E-07 63.6 10.0 123 6-136 7-147 (448)
261 PRK00683 murD UDP-N-acetylmura 96.7 0.017 3.7E-07 61.3 12.2 110 7-126 4-129 (418)
262 TIGR02717 AcCoA-syn-alpha acet 96.7 0.008 1.7E-07 64.4 9.8 107 7-131 8-127 (447)
263 PRK14106 murD UDP-N-acetylmura 96.7 0.024 5.1E-07 60.7 13.4 72 6-81 5-77 (450)
264 PRK06392 homoserine dehydrogen 96.7 0.01 2.3E-07 60.7 9.9 129 7-138 1-149 (326)
265 PRK12548 shikimate 5-dehydroge 96.6 0.013 2.8E-07 59.1 10.4 120 7-129 127-256 (289)
266 COG0002 ArgC Acetylglutamate s 96.6 0.0073 1.6E-07 61.3 8.4 154 5-164 1-167 (349)
267 PF03447 NAD_binding_3: Homose 96.6 0.019 4.1E-07 49.5 10.0 105 13-128 1-114 (117)
268 TIGR01723 hmd_TIGR 5,10-methen 96.6 0.075 1.6E-06 52.2 14.8 149 56-216 126-276 (340)
269 PRK14027 quinate/shikimate deh 96.6 0.012 2.5E-07 59.2 9.7 120 7-130 128-250 (283)
270 TIGR02356 adenyl_thiF thiazole 96.6 0.027 5.8E-07 53.7 11.7 124 6-135 21-146 (202)
271 cd05290 LDH_3 A subgroup of L- 96.6 0.017 3.6E-07 58.8 10.9 70 8-81 1-77 (307)
272 PRK08374 homoserine dehydrogen 96.6 0.055 1.2E-06 55.7 14.8 128 6-138 2-155 (336)
273 PLN02968 Probable N-acetyl-gam 96.6 0.0049 1.1E-07 64.5 7.1 97 5-110 37-137 (381)
274 cd01337 MDH_glyoxysomal_mitoch 96.6 0.011 2.4E-07 60.1 9.4 99 7-109 1-119 (310)
275 PRK00141 murD UDP-N-acetylmura 96.6 0.037 8.1E-07 59.7 13.9 114 6-128 15-150 (473)
276 PRK12475 thiamine/molybdopteri 96.6 0.022 4.7E-07 58.7 11.5 123 6-135 24-151 (338)
277 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.021 4.6E-07 53.1 10.3 121 8-134 1-123 (174)
278 TIGR01772 MDH_euk_gproteo mala 96.5 0.0096 2.1E-07 60.6 8.6 96 8-110 1-119 (312)
279 COG1064 AdhP Zn-dependent alco 96.5 0.016 3.6E-07 59.2 10.0 93 7-109 168-261 (339)
280 PRK10792 bifunctional 5,10-met 96.4 0.011 2.3E-07 59.2 8.1 74 7-110 160-234 (285)
281 PRK03369 murD UDP-N-acetylmura 96.4 0.033 7.1E-07 60.4 12.6 113 7-127 13-145 (488)
282 TIGR01019 sucCoAalpha succinyl 96.4 0.031 6.7E-07 56.1 11.4 117 6-135 6-124 (286)
283 PRK12749 quinate/shikimate deh 96.4 0.027 5.8E-07 56.8 10.8 120 7-130 125-254 (288)
284 PRK06718 precorrin-2 dehydroge 96.4 0.052 1.1E-06 51.8 12.2 79 7-94 11-91 (202)
285 cd01338 MDH_choloroplast_like 96.4 0.015 3.1E-07 59.6 8.8 102 7-115 3-134 (322)
286 PTZ00325 malate dehydrogenase; 96.4 0.021 4.6E-07 58.4 10.0 104 5-112 7-130 (321)
287 PLN00106 malate dehydrogenase 96.4 0.021 4.6E-07 58.4 10.0 101 6-110 18-138 (323)
288 PRK05442 malate dehydrogenase; 96.3 0.028 6E-07 57.7 10.7 98 6-108 4-131 (326)
289 PRK00421 murC UDP-N-acetylmura 96.3 0.048 1E-06 58.6 13.1 112 5-126 6-134 (461)
290 PRK08328 hypothetical protein; 96.3 0.028 6.1E-07 54.7 10.2 124 6-135 27-153 (231)
291 PLN02477 glutamate dehydrogena 96.3 0.026 5.7E-07 59.4 10.6 114 7-130 207-332 (410)
292 PF00899 ThiF: ThiF family; I 96.3 0.0059 1.3E-07 54.1 4.8 123 7-135 3-127 (135)
293 PRK05678 succinyl-CoA syntheta 96.2 0.046 1E-06 55.0 11.3 117 6-135 8-126 (291)
294 PRK05086 malate dehydrogenase; 96.2 0.024 5.1E-07 57.8 9.4 97 7-110 1-121 (312)
295 PRK03803 murD UDP-N-acetylmura 96.2 0.065 1.4E-06 57.4 13.1 121 7-136 7-145 (448)
296 TIGR01759 MalateDH-SF1 malate 96.2 0.048 1E-06 55.8 11.4 99 6-108 3-130 (323)
297 COG0460 ThrA Homoserine dehydr 96.2 0.05 1.1E-06 55.4 11.4 126 5-138 2-146 (333)
298 PRK14192 bifunctional 5,10-met 96.2 0.015 3.2E-07 58.4 7.5 74 7-110 160-234 (283)
299 PRK12490 6-phosphogluconate de 96.2 0.012 2.6E-07 59.5 7.0 75 219-299 201-276 (299)
300 PRK14874 aspartate-semialdehyd 96.2 0.014 3E-07 60.1 7.4 91 7-110 2-97 (334)
301 PRK01390 murD UDP-N-acetylmura 96.1 0.078 1.7E-06 57.0 13.4 112 7-128 10-143 (460)
302 COG2344 AT-rich DNA-binding pr 96.1 0.014 3E-07 54.1 6.4 84 5-96 83-169 (211)
303 PF02882 THF_DHG_CYH_C: Tetrah 96.1 0.019 4.2E-07 52.5 7.2 75 7-111 37-112 (160)
304 PRK09414 glutamate dehydrogena 96.1 0.042 9.2E-07 58.4 10.6 117 6-130 232-365 (445)
305 PRK09599 6-phosphogluconate de 96.0 0.013 2.8E-07 59.4 6.5 92 197-299 182-277 (301)
306 CHL00194 ycf39 Ycf39; Provisio 96.0 0.025 5.5E-07 57.5 8.6 70 7-81 1-73 (317)
307 PRK05671 aspartate-semialdehyd 96.0 0.018 3.8E-07 59.3 7.3 93 5-110 3-100 (336)
308 PF03720 UDPG_MGDP_dh_C: UDP-g 96.0 0.031 6.8E-07 47.4 7.7 87 16-110 17-104 (106)
309 PRK05472 redox-sensing transcr 96.0 0.011 2.3E-07 56.9 5.3 80 7-94 85-167 (213)
310 TIGR01470 cysG_Nterm siroheme 96.0 0.087 1.9E-06 50.3 11.5 72 7-89 10-85 (205)
311 PRK15059 tartronate semialdehy 96.0 0.096 2.1E-06 52.9 12.4 105 326-445 163-267 (292)
312 PRK02006 murD UDP-N-acetylmura 96.0 0.1 2.2E-06 56.8 13.4 116 7-128 8-150 (498)
313 PRK14982 acyl-ACP reductase; P 95.9 0.022 4.7E-07 58.5 7.6 111 6-134 155-268 (340)
314 PRK07688 thiamine/molybdopteri 95.9 0.045 9.8E-07 56.4 10.0 124 6-135 24-151 (339)
315 PRK01438 murD UDP-N-acetylmura 95.9 0.094 2E-06 56.6 12.9 112 7-127 17-150 (480)
316 PLN00112 malate dehydrogenase 95.9 0.049 1.1E-06 57.9 10.3 104 7-115 101-232 (444)
317 PRK02472 murD UDP-N-acetylmura 95.9 0.12 2.6E-06 55.2 13.6 115 7-128 6-137 (447)
318 cd01485 E1-1_like Ubiquitin ac 95.9 0.03 6.5E-07 53.2 7.9 126 6-135 19-148 (198)
319 TIGR01087 murD UDP-N-acetylmur 95.9 0.095 2.1E-06 55.8 12.6 119 8-135 1-138 (433)
320 PRK11559 garR tartronate semia 95.9 0.16 3.4E-06 51.2 13.5 105 326-445 166-270 (296)
321 PRK07454 short chain dehydroge 95.8 0.054 1.2E-06 52.3 9.7 92 1-109 1-93 (241)
322 PF05368 NmrA: NmrA-like famil 95.8 0.032 7E-07 53.9 8.0 70 9-82 1-74 (233)
323 PRK14191 bifunctional 5,10-met 95.8 0.038 8.3E-07 55.2 8.5 74 7-110 158-232 (285)
324 PRK08644 thiamine biosynthesis 95.8 0.034 7.3E-07 53.5 7.9 120 6-131 28-149 (212)
325 PRK06719 precorrin-2 dehydroge 95.8 0.067 1.5E-06 48.9 9.3 77 7-94 14-91 (157)
326 cd00704 MDH Malate dehydrogena 95.7 0.035 7.7E-07 56.8 8.2 101 8-115 2-132 (323)
327 PRK14176 bifunctional 5,10-met 95.7 0.036 7.8E-07 55.4 7.8 73 7-109 165-238 (287)
328 TIGR01082 murC UDP-N-acetylmur 95.7 0.13 2.7E-06 55.2 12.5 109 8-126 1-126 (448)
329 PRK12550 shikimate 5-dehydroge 95.6 0.067 1.5E-06 53.4 9.6 109 7-130 123-237 (272)
330 PRK11861 bifunctional prephena 95.6 0.071 1.5E-06 60.2 10.7 99 76-181 1-112 (673)
331 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.069 1.5E-06 47.8 8.5 74 7-110 29-103 (140)
332 cd01079 NAD_bind_m-THF_DH NAD 95.6 0.038 8.3E-07 52.0 7.0 91 7-110 63-159 (197)
333 PLN02383 aspartate semialdehyd 95.5 0.039 8.5E-07 57.0 7.7 91 5-110 6-103 (344)
334 cd01492 Aos1_SUMO Ubiquitin ac 95.5 0.073 1.6E-06 50.5 8.8 120 6-135 21-145 (197)
335 COG0039 Mdh Malate/lactate deh 95.5 0.07 1.5E-06 54.0 9.1 97 7-109 1-120 (313)
336 PRK04308 murD UDP-N-acetylmura 95.5 0.23 4.9E-06 53.1 13.7 115 6-128 5-139 (445)
337 PRK14183 bifunctional 5,10-met 95.5 0.048 1E-06 54.4 7.8 74 7-110 158-232 (281)
338 PRK10537 voltage-gated potassi 95.5 0.18 4E-06 53.0 12.5 113 7-132 241-356 (393)
339 PRK11863 N-acetyl-gamma-glutam 95.5 0.052 1.1E-06 55.2 8.1 82 5-110 1-84 (313)
340 PRK07326 short chain dehydroge 95.4 0.092 2E-06 50.4 9.5 42 6-47 6-48 (237)
341 PRK08664 aspartate-semialdehyd 95.4 0.07 1.5E-06 55.3 9.1 98 5-110 2-110 (349)
342 PRK05884 short chain dehydroge 95.4 0.31 6.6E-06 46.8 13.1 42 7-48 1-43 (223)
343 TIGR01757 Malate-DH_plant mala 95.4 0.16 3.4E-06 53.3 11.6 104 7-115 45-176 (387)
344 cd01336 MDH_cytoplasmic_cytoso 95.4 0.097 2.1E-06 53.7 9.9 97 7-108 3-129 (325)
345 TIGR03649 ergot_EASG ergot alk 95.4 0.069 1.5E-06 53.2 8.7 68 8-82 1-77 (285)
346 PRK03806 murD UDP-N-acetylmura 95.4 0.23 5E-06 52.9 13.2 114 6-128 6-134 (438)
347 cd05313 NAD_bind_2_Glu_DH NAD( 95.4 0.25 5.3E-06 48.8 12.3 117 7-130 39-175 (254)
348 PLN02520 bifunctional 3-dehydr 95.3 0.13 2.7E-06 56.4 11.1 113 7-129 380-495 (529)
349 PF02056 Glyco_hydro_4: Family 95.3 0.18 4E-06 47.1 10.6 73 8-83 1-84 (183)
350 PRK02705 murD UDP-N-acetylmura 95.3 0.21 4.7E-06 53.5 12.7 33 8-40 2-34 (459)
351 PRK13394 3-hydroxybutyrate deh 95.3 0.095 2E-06 51.1 9.2 84 7-109 8-94 (262)
352 cd00757 ThiF_MoeB_HesA_family 95.3 0.19 4.2E-06 48.7 11.2 124 6-135 21-146 (228)
353 TIGR02355 moeB molybdopterin s 95.3 0.07 1.5E-06 52.3 8.1 124 6-135 24-149 (240)
354 COG0289 DapB Dihydrodipicolina 95.2 0.19 4.2E-06 49.3 10.9 108 6-124 2-117 (266)
355 PRK05653 fabG 3-ketoacyl-(acyl 95.2 0.13 2.7E-06 49.5 9.6 84 7-109 6-92 (246)
356 PRK08265 short chain dehydroge 95.1 0.17 3.6E-06 49.7 10.6 88 1-108 1-89 (261)
357 PRK14173 bifunctional 5,10-met 95.1 0.081 1.8E-06 53.0 8.1 74 7-110 156-230 (287)
358 PRK07774 short chain dehydroge 95.1 0.14 2.9E-06 49.7 9.6 87 6-109 6-93 (250)
359 PRK14186 bifunctional 5,10-met 95.1 0.08 1.7E-06 53.3 8.0 74 7-110 159-233 (297)
360 PRK14573 bifunctional D-alanyl 95.1 0.24 5.1E-06 57.3 13.0 111 6-126 4-131 (809)
361 PRK14030 glutamate dehydrogena 95.1 0.19 4.1E-06 53.4 11.1 117 7-130 229-365 (445)
362 PRK14170 bifunctional 5,10-met 95.1 0.089 1.9E-06 52.6 8.2 74 7-110 158-232 (284)
363 PRK11908 NAD-dependent epimera 95.0 0.15 3.4E-06 52.3 10.3 39 7-45 2-42 (347)
364 PRK10538 malonic semialdehyde 95.0 0.17 3.6E-06 49.2 10.1 82 7-108 1-83 (248)
365 PF10100 DUF2338: Uncharacteri 95.0 1 2.3E-05 46.8 15.8 158 7-169 2-196 (429)
366 PRK07236 hypothetical protein; 95.0 0.033 7.1E-07 58.3 5.3 40 1-40 1-40 (386)
367 PLN00141 Tic62-NAD(P)-related 95.0 0.069 1.5E-06 52.3 7.3 41 6-46 17-58 (251)
368 PRK14177 bifunctional 5,10-met 95.0 0.095 2.1E-06 52.4 8.2 74 7-110 160-234 (284)
369 PRK08223 hypothetical protein; 95.0 0.12 2.5E-06 51.9 8.9 125 6-135 27-154 (287)
370 TIGR01771 L-LDH-NAD L-lactate 95.0 0.19 4E-06 51.0 10.4 95 11-109 1-115 (299)
371 PRK14172 bifunctional 5,10-met 95.0 0.089 1.9E-06 52.4 7.9 74 7-110 159-233 (278)
372 PRK14178 bifunctional 5,10-met 94.9 0.089 1.9E-06 52.5 7.8 74 7-110 153-227 (279)
373 PRK14169 bifunctional 5,10-met 94.9 0.093 2E-06 52.4 7.9 74 7-110 157-231 (282)
374 TIGR01758 MDH_euk_cyt malate d 94.9 0.085 1.8E-06 54.1 7.9 101 8-114 1-130 (324)
375 PRK12828 short chain dehydroge 94.9 0.24 5.3E-06 47.3 10.7 84 7-109 8-92 (239)
376 cd05197 GH4_glycoside_hydrolas 94.9 0.36 7.9E-06 51.3 12.8 74 7-83 1-85 (425)
377 TIGR01505 tartro_sem_red 2-hyd 94.9 0.31 6.7E-06 49.0 11.8 105 326-445 163-267 (291)
378 PRK12939 short chain dehydroge 94.9 0.17 3.6E-06 48.9 9.5 86 7-109 8-94 (250)
379 PRK08309 short chain dehydroge 94.9 0.28 6.1E-06 45.7 10.6 41 7-47 1-41 (177)
380 TIGR00978 asd_EA aspartate-sem 94.8 0.11 2.3E-06 53.7 8.5 96 7-110 1-107 (341)
381 PRK07523 gluconate 5-dehydroge 94.8 0.17 3.8E-06 49.3 9.7 86 7-109 11-97 (255)
382 PRK07067 sorbitol dehydrogenas 94.8 0.22 4.8E-06 48.6 10.4 82 7-108 7-89 (257)
383 PRK06180 short chain dehydroge 94.8 0.19 4.1E-06 49.8 10.0 84 6-109 4-88 (277)
384 PRK06200 2,3-dihydroxy-2,3-dih 94.8 0.25 5.3E-06 48.5 10.7 83 7-109 7-90 (263)
385 PRK14180 bifunctional 5,10-met 94.8 0.1 2.2E-06 52.2 7.8 74 7-110 159-233 (282)
386 PLN03209 translocon at the inn 94.8 0.56 1.2E-05 51.5 14.1 75 8-82 82-169 (576)
387 PRK14166 bifunctional 5,10-met 94.8 0.11 2.4E-06 52.0 7.9 74 7-110 158-232 (282)
388 PRK00676 hemA glutamyl-tRNA re 94.8 0.075 1.6E-06 54.5 6.9 35 6-40 174-209 (338)
389 PRK14187 bifunctional 5,10-met 94.7 0.11 2.3E-06 52.3 7.9 74 7-110 161-235 (294)
390 cd05298 GH4_GlvA_pagL_like Gly 94.7 0.25 5.4E-06 52.7 11.1 74 7-83 1-85 (437)
391 PRK08762 molybdopterin biosynt 94.7 0.26 5.6E-06 51.6 11.1 124 6-135 135-260 (376)
392 PRK08163 salicylate hydroxylas 94.7 0.04 8.6E-07 57.7 5.0 36 5-40 3-38 (396)
393 PRK14190 bifunctional 5,10-met 94.7 0.11 2.5E-06 51.9 7.9 74 7-110 159-233 (284)
394 PRK05597 molybdopterin biosynt 94.7 0.33 7.1E-06 50.5 11.6 124 6-135 28-153 (355)
395 PLN02353 probable UDP-glucose 94.7 0.26 5.7E-06 53.1 11.2 116 7-132 325-466 (473)
396 PRK05993 short chain dehydroge 94.6 0.23 4.9E-06 49.3 10.1 41 6-46 4-45 (277)
397 PRK01368 murD UDP-N-acetylmura 94.6 0.44 9.5E-06 51.2 12.9 121 6-135 6-140 (454)
398 TIGR01296 asd_B aspartate-semi 94.6 0.065 1.4E-06 55.3 6.3 90 8-110 1-95 (339)
399 PRK12826 3-ketoacyl-(acyl-carr 94.6 0.17 3.6E-06 48.9 8.9 46 1-46 1-47 (251)
400 TIGR03366 HpnZ_proposed putati 94.6 0.67 1.5E-05 46.1 13.4 94 7-108 122-219 (280)
401 PLN02516 methylenetetrahydrofo 94.6 0.12 2.6E-06 52.0 7.9 74 7-110 168-242 (299)
402 TIGR01546 GAPDH-II_archae glyc 94.6 0.21 4.6E-06 51.2 9.8 39 9-47 1-41 (333)
403 PRK07024 short chain dehydroge 94.6 0.23 5E-06 48.5 9.9 86 6-109 2-88 (257)
404 PRK08017 oxidoreductase; Provi 94.6 0.23 5E-06 48.2 9.9 40 7-46 3-43 (256)
405 PRK07074 short chain dehydroge 94.6 0.28 6.1E-06 47.8 10.5 41 7-47 3-44 (257)
406 COG0300 DltE Short-chain dehyd 94.6 0.22 4.8E-06 49.4 9.5 87 4-106 4-91 (265)
407 PRK06194 hypothetical protein; 94.5 0.27 5.8E-06 48.8 10.4 90 1-109 1-93 (287)
408 TIGR02964 xanthine_xdhC xanthi 94.5 0.38 8.3E-06 47.3 11.1 112 6-126 100-212 (246)
409 PRK12409 D-amino acid dehydrog 94.5 0.043 9.3E-07 57.8 4.8 33 7-39 2-34 (410)
410 TIGR03736 PRTRC_ThiF PRTRC sys 94.5 0.25 5.5E-06 48.4 9.7 34 6-39 11-55 (244)
411 PRK12936 3-ketoacyl-(acyl-carr 94.5 0.31 6.7E-06 46.9 10.4 89 1-109 1-90 (245)
412 PRK08340 glucose-1-dehydrogena 94.5 0.3 6.5E-06 47.8 10.4 84 7-108 1-85 (259)
413 PRK05690 molybdopterin biosynt 94.5 0.23 5E-06 48.8 9.4 123 6-134 32-156 (245)
414 TIGR01851 argC_other N-acetyl- 94.5 0.12 2.6E-06 52.3 7.5 81 7-110 2-83 (310)
415 PRK08773 2-octaprenyl-3-methyl 94.4 0.052 1.1E-06 56.8 5.2 40 1-40 1-40 (392)
416 cd05296 GH4_P_beta_glucosidase 94.4 0.56 1.2E-05 49.8 12.9 74 7-83 1-86 (419)
417 PRK06182 short chain dehydroge 94.4 0.32 6.9E-06 48.0 10.6 79 7-108 4-83 (273)
418 PRK14193 bifunctional 5,10-met 94.4 0.15 3.3E-06 51.0 8.0 74 7-110 159-235 (284)
419 COG2084 MmsB 3-hydroxyisobutyr 94.4 0.45 9.8E-06 47.7 11.3 105 325-445 164-269 (286)
420 PRK14182 bifunctional 5,10-met 94.4 0.15 3.2E-06 51.0 7.9 74 7-110 158-232 (282)
421 PRK12825 fabG 3-ketoacyl-(acyl 94.4 0.25 5.4E-06 47.4 9.4 91 1-108 1-93 (249)
422 PRK06482 short chain dehydroge 94.3 0.31 6.7E-06 48.1 10.3 83 7-109 3-86 (276)
423 TIGR01692 HIBADH 3-hydroxyisob 94.3 0.32 7E-06 48.9 10.4 107 326-445 160-271 (288)
424 PRK14171 bifunctional 5,10-met 94.3 0.15 3.3E-06 51.0 7.8 74 7-110 160-234 (288)
425 PRK12429 3-hydroxybutyrate deh 94.3 0.26 5.6E-06 47.8 9.4 85 7-108 5-90 (258)
426 COG3268 Uncharacterized conser 94.3 0.26 5.7E-06 49.8 9.3 123 1-130 1-130 (382)
427 PRK06500 short chain dehydroge 94.2 0.38 8.3E-06 46.4 10.5 40 7-46 7-47 (249)
428 PRK06728 aspartate-semialdehyd 94.2 0.14 2.9E-06 52.9 7.5 94 1-110 1-102 (347)
429 PRK15461 NADH-dependent gamma- 94.2 0.37 7.9E-06 48.7 10.6 104 326-444 165-269 (296)
430 PRK04690 murD UDP-N-acetylmura 94.2 0.51 1.1E-05 50.9 12.3 111 7-126 9-142 (468)
431 COG1063 Tdh Threonine dehydrog 94.2 0.32 6.8E-06 50.4 10.3 95 8-110 171-272 (350)
432 PRK04663 murD UDP-N-acetylmura 94.2 0.57 1.2E-05 50.1 12.5 112 7-128 8-137 (438)
433 PF03059 NAS: Nicotianamine sy 94.2 0.21 4.6E-06 49.7 8.5 102 7-108 122-231 (276)
434 PRK07478 short chain dehydroge 94.2 0.29 6.3E-06 47.6 9.5 41 7-47 7-48 (254)
435 PRK06139 short chain dehydroge 94.2 0.3 6.4E-06 50.2 9.9 83 7-108 8-93 (330)
436 PLN02616 tetrahydrofolate dehy 94.2 0.16 3.5E-06 52.2 7.8 74 7-110 232-306 (364)
437 PRK12829 short chain dehydroge 94.1 0.34 7.3E-06 47.3 9.9 86 6-110 11-97 (264)
438 PRK05693 short chain dehydroge 94.1 0.39 8.5E-06 47.4 10.5 80 7-109 2-82 (274)
439 PRK08267 short chain dehydroge 94.1 0.41 8.9E-06 46.7 10.5 41 7-47 2-43 (260)
440 PLN02897 tetrahydrofolate dehy 94.1 0.17 3.7E-06 51.8 7.7 74 7-110 215-289 (345)
441 PRK06185 hypothetical protein; 94.1 0.069 1.5E-06 56.1 5.2 40 1-40 1-40 (407)
442 KOG1683 Hydroxyacyl-CoA dehydr 94.1 0.29 6.2E-06 50.2 9.2 189 17-228 1-209 (380)
443 PRK06505 enoyl-(acyl carrier p 94.1 0.39 8.5E-06 47.6 10.3 40 1-40 1-44 (271)
444 PF00208 ELFV_dehydrog: Glutam 94.1 0.23 5E-06 48.8 8.4 117 6-130 32-168 (244)
445 PRK06101 short chain dehydroge 94.0 0.45 9.7E-06 46.0 10.5 42 7-48 2-44 (240)
446 PRK08306 dipicolinate synthase 94.0 0.26 5.7E-06 49.8 9.0 107 7-131 3-120 (296)
447 PRK14851 hypothetical protein; 94.0 0.33 7.1E-06 54.6 10.5 125 6-135 43-170 (679)
448 PRK08040 putative semialdehyde 94.0 0.1 2.3E-06 53.6 6.1 92 5-110 3-100 (336)
449 PRK08643 acetoin reductase; Va 94.0 0.3 6.6E-06 47.5 9.2 86 7-109 3-89 (256)
450 COG0026 PurK Phosphoribosylami 94.0 0.086 1.9E-06 54.1 5.4 70 7-82 2-75 (375)
451 PRK14181 bifunctional 5,10-met 94.0 0.2 4.4E-06 50.1 7.9 74 7-110 154-232 (287)
452 COG1486 CelF Alpha-galactosida 94.0 0.4 8.6E-06 50.6 10.3 117 6-130 3-167 (442)
453 PRK05876 short chain dehydroge 93.9 0.38 8.2E-06 47.8 9.9 89 1-108 1-92 (275)
454 PRK07877 hypothetical protein; 93.9 0.21 4.6E-06 56.4 8.7 124 6-136 107-232 (722)
455 COG0190 FolD 5,10-methylene-te 93.9 0.18 3.9E-06 50.1 7.2 75 7-111 157-232 (283)
456 PF13450 NAD_binding_8: NAD(P) 93.9 0.09 2E-06 40.8 4.2 30 11-40 1-30 (68)
457 PRK14852 hypothetical protein; 93.8 0.24 5.1E-06 57.3 9.1 125 6-135 332-459 (989)
458 PRK07878 molybdopterin biosynt 93.8 0.27 5.9E-06 51.8 9.0 124 6-135 42-167 (392)
459 PRK07109 short chain dehydroge 93.8 0.38 8.3E-06 49.4 10.0 84 7-109 9-95 (334)
460 PRK00711 D-amino acid dehydrog 93.8 0.072 1.6E-06 56.1 4.7 34 7-40 1-34 (416)
461 PRK05600 thiamine biosynthesis 93.8 0.61 1.3E-05 48.7 11.4 123 6-134 41-165 (370)
462 PRK06124 gluconate 5-dehydroge 93.8 0.41 8.9E-06 46.6 9.8 85 7-108 12-97 (256)
463 PRK06753 hypothetical protein; 93.8 0.073 1.6E-06 55.2 4.6 34 7-40 1-34 (373)
464 TIGR02853 spore_dpaA dipicolin 93.8 0.8 1.7E-05 46.1 11.9 106 7-130 2-118 (287)
465 PRK07890 short chain dehydroge 93.8 0.36 7.7E-06 47.0 9.3 85 7-108 6-91 (258)
466 PRK05868 hypothetical protein; 93.7 0.076 1.6E-06 55.4 4.6 35 6-40 1-35 (372)
467 PRK06079 enoyl-(acyl carrier p 93.7 0.41 9E-06 46.8 9.6 88 1-108 1-92 (252)
468 COG0499 SAM1 S-adenosylhomocys 93.7 0.23 5E-06 50.7 7.7 86 7-107 210-296 (420)
469 PRK03815 murD UDP-N-acetylmura 93.7 0.46 9.9E-06 50.2 10.4 108 7-126 1-116 (401)
470 PRK08589 short chain dehydroge 93.6 0.48 1E-05 46.8 10.0 85 7-109 7-92 (272)
471 PRK07063 short chain dehydroge 93.6 0.53 1.1E-05 45.9 10.3 87 7-108 8-95 (260)
472 PRK05866 short chain dehydroge 93.6 0.38 8.3E-06 48.3 9.4 86 7-109 41-127 (293)
473 KOG1399 Flavin-containing mono 93.6 0.083 1.8E-06 56.4 4.7 37 4-40 4-40 (448)
474 PLN00016 RNA-binding protein; 93.6 0.37 8E-06 50.3 9.6 37 5-41 51-92 (378)
475 PF01494 FAD_binding_3: FAD bi 93.6 0.077 1.7E-06 53.8 4.3 34 7-40 2-35 (356)
476 PRK06057 short chain dehydroge 93.6 0.69 1.5E-05 45.0 10.9 40 7-46 8-48 (255)
477 PRK07453 protochlorophyllide o 93.6 0.54 1.2E-05 47.7 10.5 91 1-108 1-92 (322)
478 PRK00517 prmA ribosomal protei 93.5 0.56 1.2E-05 46.1 10.2 112 7-130 121-235 (250)
479 PRK14168 bifunctional 5,10-met 93.5 0.28 6E-06 49.5 8.0 74 7-110 162-240 (297)
480 PRK06847 hypothetical protein; 93.4 0.1 2.2E-06 54.2 4.9 35 6-40 4-38 (375)
481 COG1648 CysG Siroheme synthase 93.4 1.2 2.7E-05 42.6 12.0 77 7-91 13-90 (210)
482 PRK06153 hypothetical protein; 93.4 0.45 9.7E-06 49.6 9.5 117 7-133 177-299 (393)
483 TIGR03325 BphB_TodD cis-2,3-di 93.4 0.59 1.3E-05 45.7 10.2 41 7-47 6-47 (262)
484 COG2242 CobL Precorrin-6B meth 93.4 1.2 2.6E-05 41.6 11.3 122 9-136 38-164 (187)
485 PRK14185 bifunctional 5,10-met 93.3 0.3 6.5E-06 49.1 7.8 74 7-110 158-236 (293)
486 TIGR03855 NAD_NadX aspartate d 93.3 0.73 1.6E-05 44.8 10.3 93 32-136 5-101 (229)
487 PRK05786 fabG 3-ketoacyl-(acyl 93.3 0.54 1.2E-05 45.1 9.5 40 7-46 6-46 (238)
488 TIGR03466 HpnA hopanoid-associ 93.3 0.14 3.1E-06 51.6 5.7 71 7-81 1-73 (328)
489 PRK11728 hydroxyglutarate oxid 93.3 0.1 2.2E-06 54.7 4.8 34 6-39 2-37 (393)
490 PRK08263 short chain dehydroge 93.3 0.65 1.4E-05 45.9 10.3 83 7-109 4-87 (275)
491 TIGR03570 NeuD_NnaD sugar O-ac 93.2 0.46 9.9E-06 44.3 8.7 80 8-95 1-81 (201)
492 PRK05872 short chain dehydroge 93.2 0.81 1.8E-05 45.9 11.0 83 7-109 10-95 (296)
493 COG4091 Predicted homoserine d 93.2 1 2.2E-05 45.9 11.3 42 7-48 18-61 (438)
494 COG0334 GdhA Glutamate dehydro 93.2 0.52 1.1E-05 49.2 9.5 114 7-130 208-333 (411)
495 PF00289 CPSase_L_chain: Carba 93.2 0.92 2E-05 38.8 9.7 100 6-132 2-106 (110)
496 COG2227 UbiG 2-polyprenyl-3-me 93.2 0.55 1.2E-05 45.6 9.1 94 7-106 61-160 (243)
497 TIGR02360 pbenz_hydroxyl 4-hyd 93.2 0.12 2.5E-06 54.4 4.9 35 6-40 2-36 (390)
498 cd01491 Ube1_repeat1 Ubiquitin 93.2 0.24 5.1E-06 49.8 6.9 120 6-135 19-140 (286)
499 PF00070 Pyr_redox: Pyridine n 93.1 0.16 3.4E-06 40.5 4.6 33 8-40 1-33 (80)
500 PRK08213 gluconate 5-dehydroge 93.1 0.5 1.1E-05 46.1 9.1 86 7-109 13-99 (259)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-140 Score=1033.71 Aligned_cols=470 Identities=58% Similarity=0.952 Sum_probs=454.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.+.||+||||+||++||+|++++||+|.+|||++++++++.++....+ ++.++.|++|++++|++|+.|++||.++.
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG~ 79 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAGT 79 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecCC
Confidence 3578999999999999999999999999999999999999998765432 68999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ 164 (505)
+||.++++|+|+|++||||||.+|+++.||.|+.+.|.++|++|++++||||++||++||+|||||++++|+.++|+|++
T Consensus 80 ~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 80 PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTK 159 (473)
T ss_pred cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhc
Q 010652 165 VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244 (505)
Q Consensus 165 iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l 244 (505)
|+||.+++|||.|+|+.|+|||||||||+|||+.||+|+|+|.+++...|++.++|.++|.+||+|.++|||++|+.++|
T Consensus 160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999777999999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccc
Q 010652 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVH 324 (505)
Q Consensus 245 ~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (505)
+.+|+.++.+++|.|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|+.|++|+.+++.|++|... .+
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~-------~~ 312 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG-------EP 312 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC-------CC
Confidence 99887777799999999999999999999999999999999999999999999999999999999988542 36
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchh
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.++..|+++|++|||+++|++|||||.+|++||++|+|+|++.+|++|||+||||||.||+.|+++|+++|++.|||++|
T Consensus 313 ~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~p 392 (473)
T COG0362 313 GDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAP 392 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccccCCC
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLP 483 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~~~ 483 (505)
+|.+.+.+.+.+||++|.+|++.|+|+|++|+||+|||+||++++|+|||||||||||||||+|+|++|.||++|++..
T Consensus 393 yF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 393 YFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998643
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.4e-130 Score=946.93 Aligned_cols=477 Identities=61% Similarity=1.004 Sum_probs=453.4
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|+.-..++||+|||++||++|++|++++||.|++|||+..+++++.+...+. .++....|++|++..+++|++|++.|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~--~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG--TKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC--CcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 4433457899999999999999999999999999999999999999876542 36888999999999999999999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ 160 (505)
+++.+|+..+++|.|+|.+||+|||.+|+.+.+|.|+.+.+.++|+.|++++||||+++|+.||++||||++++|..+++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ 158 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKD 158 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc-CCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhh
Q 010652 161 ILQKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~ 239 (505)
+|+.+++|+ +++|||.|+|+.|+|||||||||+|||+.||+|+|+|.++++.+|++.+++.++|..||++.+.|||++|
T Consensus 159 ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 159 IFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 999999997 7899999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred hhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccc
Q 010652 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+||+-+|+ .+.++++.|+|.++|||||+||++.|.++|+|+|+|.+||++|++|++|++|+.+++.+++|..+.
T Consensus 239 T~dIlk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--- 314 (487)
T KOG2653|consen 239 TADILKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--- 314 (487)
T ss_pred hHHHhheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---
Confidence 9999998765 455899999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCC
Q 010652 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ 399 (505)
....++..|++++++|+|+++|++|+|||+||++++++|+|+||+.+|+++||+||||||.||+.|.++|+++|+|.|
T Consensus 315 --~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~n 392 (487)
T KOG2653|consen 315 --DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLAN 392 (487)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhh
Confidence 233357899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCC-ccccc
Q 010652 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTE 478 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~-~~h~~ 478 (505)
||+|+.|.+++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++
T Consensus 393 ll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Htn 472 (487)
T KOG2653|consen 393 LLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTN 472 (487)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred ccCCCCc
Q 010652 479 WTKLPAR 485 (505)
Q Consensus 479 w~~~~~~ 485 (505)
|++....
T Consensus 473 Wtg~gg~ 479 (487)
T KOG2653|consen 473 WTGHGGN 479 (487)
T ss_pred ecccCCc
Confidence 9975443
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-118 Score=943.21 Aligned_cols=468 Identities=60% Similarity=1.018 Sum_probs=440.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||++|+++||+|++|||++++++++.+...+.| ..+..+.+++|++++++++|+|++|||++.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 58999999999999999999999999999999999999887533211 13567889999999887899999999999999
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.++
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia 160 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCS 160 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 245 (505)
++.+++||++|+|+.|+||++|||||+++|++|++++|++.+++ +.| ++++++.++|+.|+.|.+.||+++++.+++.
T Consensus 161 ~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~ 239 (470)
T PTZ00142 161 AKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKILA 239 (470)
T ss_pred hhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHhh
Confidence 98778899999999999999999999999999999999999998 577 9999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccccccccc
Q 010652 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHV 325 (505)
Q Consensus 246 ~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (505)
++|+.++.+.+|.|+|.++|||||+||+++|.++|||+|+|.+||++|++|.+|++|..+++.|++|..... ....
T Consensus 240 ~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~~ 315 (470)
T PTZ00142 240 KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TETE 315 (470)
T ss_pred cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----cccc
Confidence 876533368999999999999999999999999999999999999999999999999999999987741100 1123
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+++||+|||||||||++|++|+|||+||++||++|+|++|+++|++|||+||||||+||+.|.++|+++|++.|||+++.
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~ 395 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD 395 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCccccccc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
|...+++..++|||+|..|++.|+|+|++|+||+||++|+++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 396 ~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 396 FNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=7.5e-117 Score=932.38 Aligned_cols=483 Identities=86% Similarity=1.308 Sum_probs=447.1
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|....+++|||||||.||.+||+||+++||+|++|||++++++++.+.....|...+..+.|++|+++++++||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 55556679999999999999999999999999999999999999887421111002446889999999988999999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ 160 (505)
|+++++++|++++++.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhhHhh
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~~~~~~~~g~~~s~l~~~ 239 (505)
+|+.++++.++++|++|+|+.|+||++||+||++++++|++++|++.++++. | ++++++.++|+.|+.+.+.||++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHH
Confidence 9999999888888999999999999999999999999999999999999995 7 9999999999999999999999999
Q ss_pred hhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCccccc
Q 010652 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+++..+++++++|.++.++||++|||||+|++++|.++|+|+|+|.+++.+|+.|++|++|..+++.+++|..... .
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~-~ 318 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDI-L 318 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccc-c
Confidence 999988766687789999999999999999999999999999999999999999999999999999999987621100 0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCC
Q 010652 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ 399 (505)
......+...|+++|++|+|+++|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|+++|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccc
Q 010652 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w 479 (505)
||+++.|.+.+.+..++|||+|..|++.|+|+|+||+||+||++|+++++|+|||||||||||+|||+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 010652 480 TKLPAR 485 (505)
Q Consensus 480 ~~~~~~ 485 (505)
++.+..
T Consensus 479 ~~~~~~ 484 (493)
T PLN02350 479 TKLARK 484 (493)
T ss_pred hhhcCc
Confidence 865543
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-116 Score=925.91 Aligned_cols=454 Identities=58% Similarity=0.970 Sum_probs=432.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhh
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSE 95 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~ 95 (505)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++|+++++++||+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3211 3688999999999888899999999999999999999999
Q ss_pred ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhhccc-CCCCc
Q 010652 96 HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPC 174 (505)
Q Consensus 96 ~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~iga~~-~~~~~ 174 (505)
.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++++ ++++|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCc
Q 010652 175 VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG 253 (505)
Q Consensus 175 v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~ 253 (505)
++|+|+.|+||++|||||+|+|++|++++|++.++++ .| ++++++.++|+.||.|.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 67 999999999999999999999999999999875532566
Q ss_pred hhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccchhhHHHH
Q 010652 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 333 (505)
Q Consensus 254 ~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 333 (505)
+++|.|+|.++|||||+||+++|.++|||+|+|.+|+++|+.|.++++|..+++.|.+|.. ....+++||+||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987742 112356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHhHHHHhh
Q 010652 334 VRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR 413 (505)
Q Consensus 334 v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~ 413 (505)
||||||||+|++|+|||+||++||++|+|++|+.+|++|||+||||||+||+.|.++|+++|+++|||+++.|...+++.
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCcccccccC
Q 010652 414 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 414 ~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
.++|||+|..|++.|+|+|+||+||+||++|+++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=2.4e-115 Score=921.03 Aligned_cols=463 Identities=59% Similarity=0.977 Sum_probs=437.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.+++||+|++|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 025677899999988888999999999999999
Q ss_pred HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhhc
Q 010652 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAA 167 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~iga 167 (505)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 168 QVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 168 ~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
++++++|++|+|+.|+||++|||||+++|++|++++|++.|++ +.| ++++++.++|+.||.+.+.||+++++.+++.+
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 8877899999999999999999999999999999999999997 577 99999999999999999999999999999998
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+|+ .+.+++|.|+|.++|||||+||+++|.++|||+|+|.+|+++|+.|..|++|..+++.|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 765 45689999999999999999999999999999999999999999999999999999999876421 12235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
++||+||||||||||+|++|+|||+||++||++|+|++|+++|++|||+||||||+||++|.++|+++|+++|||+|+.|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCC--ccccccc
Q 010652 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG--SFHTEWT 480 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~--~~h~~w~ 480 (505)
...+++..++|||+|..|++.|+|+|+||+||+||++||++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999996
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=3e-90 Score=675.30 Aligned_cols=291 Identities=62% Similarity=1.029 Sum_probs=249.0
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhh
Q 010652 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 184 g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~ 263 (505)
|||||||||+|||++||+++|+|.++++..|++++++.++|+.||+|.++|||++++.+++++++ .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976569999999999999999999999999999999876 56789999999999
Q ss_pred CCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHHHHH
Q 010652 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 343 (505)
Q Consensus 264 ~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ai~~~~i 343 (505)
+|||||+|++++|.++|||+|+|++||++|++|+.|++|..+++.+++|.... ....+...|+++|++|+|+|+|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~-----~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD-----ESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST-----TS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc-----cccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874110 2345678999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHHHHH
Q 010652 344 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423 (505)
Q Consensus 344 ~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~ 423 (505)
++|+|||+||++||++|+|++|+++|++|||+||||||.||++|.++|+++|+++|||++|.|.+.+++..++|||+|..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHhhhhcCccccccCCCCccccccc
Q 010652 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 424 a~~~gvp~P~~saal~y~~~~~~~~~~a~liqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
|++.|+|+|++++||+|||+++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-60 Score=441.42 Aligned_cols=298 Identities=28% Similarity=0.506 Sum_probs=269.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+||+||||.||.+|+++|.+.||+|++||+|++.++++...+ ++..+|+++++..|..|++|.+|||++..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999998775 466889999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.|++||+|||.+|+++.++.++.+.++++|++|+|++.|||..+++.|-++|+|||+++++++.|+|++++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
+. .
T Consensus 154 ------~g-----------------------------------------------------------------------e 156 (300)
T COG1023 154 ------PG-----------------------------------------------------------------------E 156 (300)
T ss_pred ------cC-----------------------------------------------------------------------c
Confidence 32 0
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+.| .+-+| .+
T Consensus 157 -~Gy---------------------------------------------------------l~~Gp------------~G 166 (300)
T COG1023 157 -DGY---------------------------------------------------------LYCGP------------SG 166 (300)
T ss_pred -Ccc---------------------------------------------------------ccccC------------CC
Confidence 000 01123 26
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+|||+|||||+|||++|++|+|||+||+++ .+++|+++|+++||.|+.|||+||+.+.++|+++|+|+.+- ..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v 240 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRV 240 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Cee
Confidence 899999999999999999999999999965 58899999999999999999999999999999988764322 223
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCChhhhHHHHHhhhhcCcccccc
Q 010652 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~-y~~~~~~~~~~a~liqaqRd~FG~H~~~r~ 469 (505)
. .++++ ||+|++|++.|+|+|+|+.||. .|.|.+......+++.|+|..||.|..++.
T Consensus 241 ~---dSGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 241 S---DSGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred c---cCCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 3 37889 9999999999999999999999 788888888999999999999999998775
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=5.8e-56 Score=447.62 Aligned_cols=295 Identities=28% Similarity=0.495 Sum_probs=257.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++||+|.+|||++++++++.+.+ .....+++++++.+..+|+|++|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4799999999999999999999999999999999999888754 244578888887777799999999998 89
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
.+. +.++|+|+.
T Consensus 153 ~~~---~~~~~~G~~----------------------------------------------------------------- 164 (298)
T TIGR00872 153 PEE---QGYLYCGPC----------------------------------------------------------------- 164 (298)
T ss_pred CcC---CCEEEECCc-----------------------------------------------------------------
Confidence 210 012222221
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+
T Consensus 165 -------------------------------------------------------------------------------G 165 (298)
T TIGR00872 165 -------------------------------------------------------------------------------G 165 (298)
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+++++|++||++++++|++|+|||.|++++ +|++|+++++++|++||+|||++|+.+.++|++++.++ .|
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~------~~ 235 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLA------EF 235 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHH------HH
Confidence 345678888888888888888888888865 89999999999999999999999999999999887543 35
Q ss_pred hHHH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccC-ChhhhHHHHHhhhhcCccccc
Q 010652 407 AREM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQAQRDLFGAHTYER 468 (505)
Q Consensus 407 ~~~~-~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~-~~~a~liqaqRd~FG~H~~~r 468 (505)
...+ +++++ ||+|.+|++.|+|+|++++||.|++.+++. ++|+|||||||||||+|+|++
T Consensus 236 ~~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 236 SGRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 5554 44445 999999999999999999999999999988 999999999999999999987
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4.8e-48 Score=390.71 Aligned_cols=299 Identities=31% Similarity=0.540 Sum_probs=249.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||++|+++|++|++|||++++++++.+.+ ...+.+++|+++.++.+|+|++++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998886643 467789999988655579999999998789
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|+++||+||+.|..++++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhccc
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (505)
.+.+ ..++|+|+.|+|+++|+++
T Consensus 154 ~~~~--~~~~~~G~~G~g~~~Kl~~------------------------------------------------------- 176 (301)
T PRK09599 154 PRAE--DGYLHAGPVGAGHFVKMVH------------------------------------------------------- 176 (301)
T ss_pred cccc--CCeEeECCCcHHHHHHHHH-------------------------------------------------------
Confidence 2100 1688888766555544444
Q ss_pred ccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchHHHHHHHHhccCCCcccccccccccc
Q 010652 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
T Consensus 177 -------------------------------------------------------------------------------- 176 (301)
T PRK09599 177 -------------------------------------------------------------------------------- 176 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhH
Q 010652 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
|+++++.+++|+|+|.|+++ ++|++|+++++++|++||+++|++|+....++.+++.. +.+
T Consensus 177 ---------n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~ 237 (301)
T PRK09599 177 ---------NGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEI 237 (301)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHH
Confidence 44444555555666666654 56778888888888888888888888888888665432 112
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHH-HHhhccCChhhhHHHHHhhhhcCcccccc
Q 010652 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y-~~~~~~~~~~a~liqaqRd~FG~H~~~r~ 469 (505)
...++. ...+||++..|.+.|+|+|++++++.| |.++....+|.|++||||||||+|+|+|.
T Consensus 238 ~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 238 SGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 222222 333499999999999999999999998 99999999999999999999999999995
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.3e-46 Score=369.94 Aligned_cols=256 Identities=26% Similarity=0.412 Sum_probs=239.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+||||||+|.||.+||.||.++||+|++|||++++ .+.+.+.+ .....++.|+++. +|+||+|||++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999 44444444 4678899999998 9999999999999
Q ss_pred HHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
+++|+ +++.+.+++|.++||+||..|..++++.+.++++|++|+|+|||||+.++..|+ +||+||+++.|++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 579999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.+| ++++|+|+.|+|+.+||+||.+..+.+++++|++.++++.| +|++.+.+++ +.+..+||.++.+.
T Consensus 151 l~~~g------~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~~ 220 (286)
T COG2084 151 LEAMG------KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENYG 220 (286)
T ss_pred HHHhc------CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhhc
Confidence 99999 88999999999999999999999999999999999999999 9999999997 67788999999998
Q ss_pred hhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+.+.. ++|+++|.++++.||++ ++.++|+++|+|+|+.+.+
T Consensus 221 ~~m~~-~~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 221 PRMLE-GDFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred chhhc-CCCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 76665 45999999999999997 9999999999999998865
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.2e-45 Score=368.16 Aligned_cols=207 Identities=34% Similarity=0.605 Sum_probs=182.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+.+ ...+.+++++++..+.+|+|++|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4799999999999999999999999999999999988876543 466789999987644469999999998889
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHhh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEI 223 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~~ 223 (505)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| |+|++++.++
T Consensus 154 ~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 311 27999999999999999999999999999999888777654 2444444443
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=5.6e-43 Score=337.41 Aligned_cols=263 Identities=23% Similarity=0.350 Sum_probs=244.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.+|+.||.++||+|+||||+.+++++|.+.|+ ..+++|.|+++. +|+||.|||++.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 568999999999999999999999999999999999999998764 568999999998 9999999999999
Q ss_pred HHHHH---HHHhhccCCCCEE-EeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~ii-Id~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ 160 (505)
+++++ .+++..+++|... ||.||+.|..++++.+.+..++..|+|+|||||..+|+.|. +||+|||++.++++.+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99998 4566777788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhh
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (505)
+|+.+| ++++|+|..|.|..+|+++|.+....|..++|++.++.+.| +|+..+.+++ |.|...|+.+...
T Consensus 185 ~~~~mG------k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 185 VFKLMG------KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNP 254 (327)
T ss_pred HHHHhc------ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCc
Confidence 999999 89999999999999999999999999999999999999999 9999999998 6788899999998
Q ss_pred hhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.+.+ ++|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+-|.+
T Consensus 255 ~p~m~k-~dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly~~ 302 (327)
T KOG0409|consen 255 VPGMLK-GDYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLYKS 302 (327)
T ss_pred Cchhhc-CCCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHHHH
Confidence 877765 45999999999999997 8999999999999999887 445444
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2e-40 Score=333.13 Aligned_cols=261 Identities=22% Similarity=0.340 Sum_probs=234.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||++|.++||+|.+|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 46555432 4567899998887 99999999999889
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 9988 346777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ++++|+|+.|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.+
T Consensus 150 ~~~g------~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 219 (292)
T PRK15059 150 ELLG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHGE 219 (292)
T ss_pred HHHc------CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhch
Confidence 9999 78999999999999999999999999999999999999999 9999999987 567788999998887
Q ss_pred hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.. ++|+++|.++.+.||+. ++++.|++.|+|+|+...+ .+.|-.
T Consensus 220 ~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 265 (292)
T PRK15059 220 RMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELFNT 265 (292)
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6654 56889999999999996 9999999999999988754 444433
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-39 Score=325.93 Aligned_cols=263 Identities=22% Similarity=0.275 Sum_probs=232.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ ...+.++.++++. +|+||+|+|+..++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 4899999999999999999999999999999999998887653 3567789888887 99999999998778
Q ss_pred HHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
+.++ +++.+.+++|.++||+||..|.+++++.+.+.++|+.|+|+||+|++..+..|. .+|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 357778889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhh
Q 010652 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ +.++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++ +.+...++.+....+
T Consensus 152 ~~~g------~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l---~~~~~~~~~~~~~~~ 221 (296)
T PRK15461 152 MAMG------NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVM---SGTAAGKGHFTTTWP 221 (296)
T ss_pred HHHc------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccChHHHcccc
Confidence 9999 78999999999999999999999999999999999999999 9999999987 444445555554432
Q ss_pred -hcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 243 -IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 243 -~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
.+.. ++|+++|.++.+.||++ ++.++|.++|+|+|+...+ .++|..+
T Consensus 222 ~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 269 (296)
T PRK15461 222 NKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQA 269 (296)
T ss_pred chhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 4443 56889999999999997 9999999999999998765 4555443
No 16
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=3.4e-38 Score=316.98 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=232.0
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHH
Q 010652 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTI 90 (505)
Q Consensus 11 iIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl 90 (505)
|||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ...+.++.+++++ +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887653 4567899999887 999999999988889998
Q ss_pred ---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHhh
Q 010652 91 ---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 91 ---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~~ig 166 (505)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ .+|+||+++.+++++|+|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh---
Q 010652 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI--- 243 (505)
Q Consensus 167 a~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~--- 243 (505)
+.++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||..+.+.+.
T Consensus 151 ------~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 151 ------RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPGV 220 (288)
T ss_pred ------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCccc
Confidence 78999999999999999999999999999999999999999 9999999987 5667778877765432
Q ss_pred ---cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 244 ---FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 244 ---l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
....++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ .+.|..
T Consensus 221 ~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 269 (288)
T TIGR01692 221 MPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSL 269 (288)
T ss_pred cccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 112256889999999999997 9999999999999998765 445443
No 17
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3e-37 Score=361.02 Aligned_cols=263 Identities=17% Similarity=0.279 Sum_probs=241.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
..+|||||+|.||.+||.||+++||+|++|||++++++++.+.+ ...++|+.|+++. +|+||+|||++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 45899999999999999999999999999999999999998764 3678999999998 9999999999999
Q ss_pred HHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcC--CeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~g--i~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~ 159 (505)
+++|+ +++++.+.+|++|||+||..|.+++++.+.+.++| +.|+|+||+||+.+|+.|. ++|+||+++++++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 57888899999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHhhcccCCCCcEEEe-CCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 160 DILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
|+|+.+| +.++++ |+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|+.++
T Consensus 154 p~l~~~g------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~~ 223 (1378)
T PLN02858 154 PFLSAMC------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIFK 223 (1378)
T ss_pred HHHHHhc------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHHH
Confidence 9999999 677764 99999999999999999999999999999999999 9999999998 67788899999
Q ss_pred hhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 239 ~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
.+.+.+.. ++|.++|.++.+.||++ +++++|.++|+|+|+...+ .++|..
T Consensus 224 ~~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 224 NHVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred hhhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 88876655 56889999999999997 9999999999999998765 455533
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.5e-36 Score=306.38 Aligned_cols=263 Identities=21% Similarity=0.316 Sum_probs=235.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.++|.+|+++|++|.+|||++++.+++.+.+ ...++++++++++ +|+||+|+|+...
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 46899999999999999999999999999999999988776543 4567789998877 9999999999888
Q ss_pred HHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010652 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~l 161 (505)
++.++ +++.+.+.+|++|+|+||..|.+++++.+.+.++|++|+++|++|++..+..|. .+|+||+++++++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 568888899999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhh
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ..++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|++++.+.
T Consensus 152 l~~~~------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~~ 221 (296)
T PRK11559 152 MKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKA 221 (296)
T ss_pred HHHhc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhc
Confidence 99999 78899999999999999999999999999999999999998 9999998886 56777888888877
Q ss_pred hhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
+.+.. ++|.++|.++...||++ .+++.|++.|+|+|+...+ .++|..
T Consensus 222 ~~~~~-~d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 268 (296)
T PRK11559 222 PMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQA 268 (296)
T ss_pred hHhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 66544 45888899999999986 8999999999999998875 455544
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=2.7e-36 Score=303.75 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=235.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++++++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999988887653 3456788888887 999999999988888
Q ss_pred HHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHHH
Q 010652 88 QTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 88 ~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll~ 163 (505)
.++ +.+.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+|+||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457778889999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh
Q 010652 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (505)
.++ +.++++|+.|+|+.+|+++|.+....+++++|++.++++.| ++++++.+++ +.+.+.|++++.+.+.
T Consensus 151 ~lg------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~~ 220 (291)
T TIGR01505 151 ALG------KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGER 220 (291)
T ss_pred Hhc------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhChh
Confidence 999 78999999999999999999999999999999999999998 9999999998 5566789999888766
Q ss_pred cccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
+.. ++|.++|.++.+.||+. ++.+.|.+.|+|+|+..++ .++|..+
T Consensus 221 ~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 221 VID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 654 56888999999999997 8999999999999998876 4454443
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.7e-35 Score=346.25 Aligned_cols=266 Identities=18% Similarity=0.247 Sum_probs=239.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ .....+++++++. +|+||+|||++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~~ 392 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANEV 392 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCChH
Confidence 447899999999999999999999999999999999999887654 3457899999987 999999999999
Q ss_pred hHHHHH---HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHH
Q 010652 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNI 158 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v 158 (505)
++++++ .++++.+.+|++|||+||+.|..++++.+.+.+ +|++|+++||+||+.++..|. ++|+||++++++++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~ 472 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSA 472 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHH
Confidence 999998 467888889999999999999999999999998 899999999999999999999 99999999999999
Q ss_pred HHHHHHhhcccCCCCcEEEe-CCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhH
Q 010652 159 RDILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLV 237 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~ 237 (505)
+|+|+.++ +.++++ |+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ +.+.+.||.+
T Consensus 473 ~plL~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~~~ 542 (1378)
T PLN02858 473 GSVLSALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSWMF 542 (1378)
T ss_pred HHHHHHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccChhh
Confidence 99999999 677774 67999999999999999999999999999999999 9999999998 5667788988
Q ss_pred hhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHccc
Q 010652 238 EITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (505)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~ 298 (505)
+.+.+.+.. ++|+++|.++.+.||++ ++.+.|.++|+|+|+...+ .++|..+.
T Consensus 543 ~~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 543 ENRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred hhccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 877766554 56889999999999997 8999999999999998765 55665543
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=2.1e-31 Score=245.51 Aligned_cols=159 Identities=28% Similarity=0.489 Sum_probs=142.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ .+.++|++|++++ +|+|++|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 46899999999999999999999999999999999999998764 5789999999998 9999999999999
Q ss_pred HHHHHHH--HhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010652 86 VDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~~--l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~~ll 162 (505)
+++++.+ +.+.+.+|++|||+||..|.+++++.+.+.++|++|+|+||+||+.+++.|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEE-EeCC
Q 010652 163 QKVAAQVDDGPCVT-YIGE 180 (505)
Q Consensus 163 ~~iga~~~~~~~v~-~~G~ 180 (505)
+.++ .+++ ++||
T Consensus 151 ~~~~------~~v~~~~G~ 163 (163)
T PF03446_consen 151 EAMG------KNVYHYVGP 163 (163)
T ss_dssp HHHE------EEEEEE-ES
T ss_pred HHHh------CCceeeeCc
Confidence 9999 6788 4575
No 22
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=4.6e-28 Score=255.21 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=205.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...| +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4799999999999999999999999999999999988776421 0011 36777888888776
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCe-EEcCCCCCChhh
Q 010652 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLL-YLGMGVSGGEEG 139 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~-~v~~pvsgg~~~ 139 (505)
+|+||+|||++. .+..+++++.+.+.+|++||++||..|.+++++...+.++ |.. +.++|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 999999999874 3778888999999999999999999999999987666544 443 567888888888
Q ss_pred hhcCC---------cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010652 140 ARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 140 a~~G~---------~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+..|. .+++|+++++.++++++|+.++. ..++++++.++|+++|+++|.+.+..+++++|+..+++
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~ 230 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 230 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776 57899999999999999999971 25788999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCch--hHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 211 HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| +|++++.+++ +.+. .+.. ..+.|+| ....+.||+. +....|.++|+++|++.+
T Consensus 231 ~~G-iD~~~v~~~~---~~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 231 ALG-IDVYEVIEAA---GTDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEA 288 (411)
T ss_pred HhC-CCHHHHHHHh---CCCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHH
Confidence 999 9999999886 2221 1111 2244443 3445778875 788999999999999987
Q ss_pred H
Q 010652 289 S 289 (505)
Q Consensus 289 A 289 (505)
+
T Consensus 289 ~ 289 (411)
T TIGR03026 289 A 289 (411)
T ss_pred H
Confidence 6
No 23
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.93 E-value=1.9e-24 Score=227.42 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=169.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh------------hcCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL------------SIQRP 73 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~------------~l~~a 73 (505)
+++|+|||+|.||.++|.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 478999999999999999999999999999999999987542210 00 1122222221 01249
Q ss_pred cEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC--------------eEEc
Q 010652 74 RSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL--------------LYLG 130 (505)
Q Consensus 74 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi--------------~~v~ 130 (505)
|+||+|||++ ..+.++++++.+.+++|++||+.||+.|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999997 5788888999999999999999999999999999888876543 3455
Q ss_pred CC--CCCChhhhhcCC-cccCCC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHH
Q 010652 131 MG--VSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (505)
Q Consensus 131 ~p--vsgg~~~a~~G~-~i~~gg-~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~ 206 (505)
+| +.+|...+..+. ..++|| +++++++++++|+.++ +.++++++.++|+++|+++|.+.+..+++++|+.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 666655555554 567788 9999999999999999 6678899999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 010652 207 DVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~~~ 224 (505)
.+|++.| +|++++.+.+
T Consensus 231 ~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 231 LICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHhC-CCHHHHHHHh
Confidence 9999999 9999998886
No 24
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.92 E-value=9e-24 Score=222.30 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=184.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc------------cCCCCeeeeCCHHHHHhhcCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR------------EGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~------------~g~~~i~~~~s~~e~v~~l~~ 72 (505)
..|+|||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .| ++..+++. +.++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~--- 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE--- 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---
Confidence 45799999999999999999887 699999999999999987 3321 01 23444444 45555
Q ss_pred CcEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEc--------CCC
Q 010652 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLG--------MGV 133 (505)
Q Consensus 73 advIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~--------~pv 133 (505)
+|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+.+.+ .|..+.+ .++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 99999999988 3445555789999999999999999999999986554433 3555443 456
Q ss_pred CCChhhhhcCC--cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 010652 134 SGGEEGARHGP--SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 134 sgg~~~a~~G~--~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~ 211 (505)
.+|......+. .++.|++++..+.++++++.+.. ..++++++.++|+++|+++|.+.+..+++++|+..++++
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443 57778888888999999999872 236788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 212 VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 212 ~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
.| +|.+++.++. +.. |.+.. ... +.+++.++ -+|. ++.+..+.++|++.+++.+|
T Consensus 232 ~G-iD~~~v~~a~---~~~----~~~~~----~~p-G~vGG~Cl----pkD~------~~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GSK----WNFLP----FRP-GLVGGHCI----GVDP------YYLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cCC----CCccc----CCC-Cccccccc----cccH------HHHHHHHHhcCCCcHHHHHH
Confidence 99 9999998885 221 21111 111 11334332 2232 14456788999998888876
No 25
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=4.9e-24 Score=218.21 Aligned_cols=282 Identities=13% Similarity=0.044 Sum_probs=203.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-CC--CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-QL--PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g-~~--~i~~~~s~~e~v~~l~~advIil 78 (505)
+|+|+|||+|.||..+|.+|+++||+|++|+|++++.+.+...+.+. | .. ++..+++++++++. +|+||+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEEE
Confidence 46899999999999999999999999999999999888777542110 0 00 24567788887776 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCC-Chhh--HHHHHHHHHH---cCCeEEcCCCCCChhhhhcCC-cccCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLN--TERRIHEASQ---KGLLYLGMGVSGGEEGARHGP-SLMPGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--t~~~~~~l~~---~gi~~v~~pvsgg~~~a~~G~-~i~~gg~ 151 (505)
++|+. ++++++ +.+.++.++|+++|+ .+.+ .+.+.+.+.+ +++.+++.|....+.+...+. .++.|++
T Consensus 81 ~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 81 AVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred ECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 99996 566655 445678899999995 4443 5566666655 566666666543333333345 7789999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEE--------EeCC---------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVT--------YIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~--------~~G~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
++.+++++++|+..+. .++ ++|. .|++..+|+.+|......++.++|+..++++.|
T Consensus 156 ~~~~~~v~~ll~~~~~------~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 228 (328)
T PRK14618 156 PGLARRVQAAFSGPSF------RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG- 228 (328)
T ss_pred HHHHHHHHHHhCCCcE------EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999998884 333 3443 589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcc-CCcchhhHhhhhh--hcccc---cccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 215 LSNAELAEIFDEWNK-GELESFLVEITAD--IFKVK---DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 215 l~~~~i~~~~~~~~~-g~~~s~l~~~~~~--~l~~~---~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++++.+.++....+- +...|+..+.+.. .+.++ +++.++|.+....+|+. .+.+.+.++|+++|++.+
T Consensus 229 ~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~ 302 (328)
T PRK14618 229 AEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEA 302 (328)
T ss_pred CCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHH
Confidence 999999887521000 2345666665532 33322 12344566666667765 888999999999999886
Q ss_pred HHHHHHHcccchHHHHHHHHhc
Q 010652 289 SLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 289 A~~~r~~s~~~~~r~~~~~~~~ 310 (505)
+ .+.+...++.......++.
T Consensus 303 ~--~~~~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 303 V--ARVARGGWDPLAGLRSLMG 322 (328)
T ss_pred H--HHHHhCCCCHHHHHHHHhc
Confidence 4 4555555565565555543
No 26
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=2.1e-23 Score=212.91 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=191.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC---C----CCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g---~----~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+|+|||+|.||..+|.+|+++|++|++|||++++++.+.+.+.... . .++..+.+++++++. +|+||+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEEe
Confidence 68999999999999999999999999999999999888776531100 0 025567788887776 9999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCC-ChhhHHHHHHHHHHc-----CCeEEcCCCCCChhhhhcCC-cccCCCCH
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQK-----GLLYLGMGVSGGEEGARHGP-SLMPGGSF 152 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~t~~~~~~l~~~-----gi~~v~~pvsgg~~~a~~G~-~i~~gg~~ 152 (505)
||+ ..++++++++.+.+.++++||+++|+ .+...++..+.+.+. ...++..|..+.+..+..+. .++.|++.
T Consensus 79 v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 999 58999999999998899999999844 443444445555443 33455566554443333334 56677899
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCC-----------------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCC
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l 215 (505)
+.++++.++|+..+. .+.+..+ .|.+..+|+.+|.+....++.++|++.++++.| +
T Consensus 158 ~~~~~~~~~l~~~~~------~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~ 230 (325)
T PRK00094 158 ELAERVQELFHSPYF------RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG-A 230 (325)
T ss_pred HHHHHHHHHhCCCCE------EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-C
Confidence 999999999998873 3333222 378888999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHhcc-CCcchhhHhhhh--hhcccccccC-----CchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 216 SNAELAEIFDEWNK-GELESFLVEITA--DIFKVKDEYG-----EGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 216 ~~~~i~~~~~~~~~-g~~~s~l~~~~~--~~l~~~~~~~-----~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
+++.+.++...-+. ....|+..+.+. ..+.....+. .+ .+....+|++ .+.+.|.++|+|+|+..
T Consensus 231 d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~~~ 303 (325)
T PRK00094 231 NPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPITE 303 (325)
T ss_pred ChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCHHH
Confidence 99998776321000 011122221111 1111111000 00 1122334443 68889999999999988
Q ss_pred HHHHHHHHcccchHHHHHHHH
Q 010652 288 ASLDCRYLSGLKEEREKAAKV 308 (505)
Q Consensus 288 ~A~~~r~~s~~~~~r~~~~~~ 308 (505)
++ . +.+...++.+..+..+
T Consensus 304 ~~-~-~~~~~~~~~~~~~~~~ 322 (325)
T PRK00094 304 AV-Y-AVLYEGKDPREAVEDL 322 (325)
T ss_pred HH-H-HHHcCCCCHHHHHHHH
Confidence 64 3 4455555555554443
No 27
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.91 E-value=4.7e-23 Score=214.44 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=163.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~-----------~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.... ....++..+.+++++++. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999987775 99999999999999888752100 000134555567777776 999
Q ss_pred EEEecCCC----------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-
Q 010652 76 VIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 76 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~- 144 (505)
||+|||++ ..++++++++.+ +.+|++||+.||++|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888887 68999999999999999999998887766555 345555553
Q ss_pred --------cccCCCCHHHHHHHHHHHHH--hhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCC
Q 010652 145 --------SLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 145 --------~i~~gg~~e~~~~v~~ll~~--iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.++.|++++..+++.++|.. ++. ...+++++.++|+++|++.|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G- 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG- 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 57889988888999998854 441 23347899999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 010652 215 LSNAELAEIF 224 (505)
Q Consensus 215 l~~~~i~~~~ 224 (505)
+|.+++.+++
T Consensus 223 iD~~eV~~a~ 232 (388)
T PRK15057 223 LNTRQIIEGV 232 (388)
T ss_pred cCHHHHHHHh
Confidence 9999999887
No 28
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.89 E-value=5.9e-22 Score=201.10 Aligned_cols=250 Identities=11% Similarity=0.082 Sum_probs=184.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccC------CCCeeeeCCHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREG------QLPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-----------~~~~~g------~~~i~~~~s~~e~v~~ 69 (505)
++|+|||+|.||.+||.+|+++|++|++||+++++.+...+ .+...+ ..++..+.++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 58999999999999999999999999999999987765432 111000 0024677888888776
Q ss_pred cCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccC
Q 010652 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMP 148 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~ 148 (505)
+|+|++++|+..+++..+ ..+.+.. ++++++.+||+ .....++.+.+...+..+.++|+++.... ....++
T Consensus 83 ---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv 154 (308)
T PRK06129 83 ---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVV 154 (308)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEe
Confidence 999999999976665554 5555544 55666665555 44566777777767778888999753211 123355
Q ss_pred ---CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 149 ---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 149 ---gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
+++++++++++++++.+| +.++++|+.+.|+. + |.+ .+++++|++.++++.| +|++++++++
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~i---~-nrl---~~a~~~EA~~l~~~g~-~~~~~id~~~- 219 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAG------QSPVRLRREIDGFV---L-NRL---QGALLREAFRLVADGV-ASVDDIDAVI- 219 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEecCCCccHH---H-HHH---HHHHHHHHHHHHHcCC-CCHHHHHHHH-
Confidence 489999999999999999 88999998899973 3 443 4478899999999988 9999999997
Q ss_pred HhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 226 EWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 226 ~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
..+.+.+|.+ ..+.... |.++++|....+.++.. +..+.+.+.+.|.|++..-+
T Consensus 220 --~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 220 --RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred --HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 4555566555 3343332 44667788888888764 77788888999999887543
No 29
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.88 E-value=4.1e-23 Score=202.79 Aligned_cols=118 Identities=14% Similarity=0.290 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhhHh
Q 010652 328 KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFA 407 (505)
Q Consensus 328 ~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~~~ 407 (505)
||||||||||||||+||.++|+|++|+.+.+..+ .++.+|++.||.| .++|+||+++.+++++++..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997643222 4677778889988 699999999999999876556789999999
Q ss_pred HHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 408 REMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 408 ~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
...++++| +|++++|++.|+|+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999999 78888877743
No 30
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=6.9e-22 Score=200.60 Aligned_cols=261 Identities=15% Similarity=0.170 Sum_probs=185.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.|+|+|||+|.||.+||.+|+++||+|++|||++. .++++++++ +|+||+++|+ .+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~-~~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSM-KG 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECCh-HH
Confidence 46899999999999999999999999999999852 256677776 9999999999 48
Q ss_pred HHHHHHHHhhc-cCCCCEEEeCCC-CChhhHHHHHHHHHHcCCeEEcCCCC--CChhhhh---cC--C-cccCCCCHHHH
Q 010652 86 VDQTIAALSEH-MSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMGVS--GGEEGAR---HG--P-SLMPGGSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~-l~~g~iiId~st-~~~~~t~~~~~~l~~~gi~~v~~pvs--gg~~~a~---~G--~-~i~~gg~~e~~ 155 (505)
++.+++++.+. +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. .+ . .+++|++.+.+
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999988774 788999999987 444444444444433 24556663 4443332 22 3 77889999999
Q ss_pred HHHHHHHHHhhcccCCCCcEEEeCC-----------------CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010652 156 NNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++|+..+ ..+++.++ .|.+...|+.+|......+++++|+..++++.| ++++
T Consensus 137 ~~v~~ll~~~~------~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~ 209 (308)
T PRK14619 137 ETVQQIFSSER------FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTE 209 (308)
T ss_pred HHHHHHhCCCc------EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999887 45554443 233455669999999999999999999999999 9988
Q ss_pred HHHHHHHHhccCCcchhhHhhhhhhcccccccCCch------hHHHHHhhhCCCccHH----HHHHHHHHcCCCcchhHH
Q 010652 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE------LVDKILDKTGMKGTGK----WTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~------~ld~i~~~~~~kgtg~----~~~~~A~~~gvp~p~i~~ 288 (505)
.+.++ .|.+++++.. ..... ++|..+| .++.+.+...++.+|. .+.+.++++|+++|++.+
T Consensus 210 t~~~~-----~g~gd~~~t~---~~~~~-rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~ 280 (308)
T PRK14619 210 TFYGL-----SGLGDLLATC---TSPLS-RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQ 280 (308)
T ss_pred ccccc-----cchhhhheee---cCCCC-ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88663 2445544411 11111 2232223 3334444444444443 556789999999999986
Q ss_pred HHHHHHHcccchHHHHHHHHhcc
Q 010652 289 SLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 289 A~~~r~~s~~~~~r~~~~~~~~~ 311 (505)
+ .+.+....+.+.....++..
T Consensus 281 v--~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 281 V--YRLLQGEITPQQALEELMER 301 (308)
T ss_pred H--HHHHcCCCCHHHHHHHHHcC
Confidence 4 46666666777777776643
No 31
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=7.6e-22 Score=196.70 Aligned_cols=121 Identities=11% Similarity=0.202 Sum_probs=107.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCC-CCCcc
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLVV 402 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~-~~ll~ 402 (505)
++++|||||||||||||++||.++|.|++||..-+..+ .++++|+.-||+| .+.|||++++.++|+++++. ...|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 45899999999999999999999999999997654333 4556666669999 99999999999999976543 45999
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010652 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (505)
|.+.+.+.||+++ ||+++.|+++|+|+|.|++|++ |+++++.+|.
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~ 298 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERV 298 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999 9999999999999999999999 8999998884
No 32
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.8e-20 Score=175.53 Aligned_cols=199 Identities=32% Similarity=0.499 Sum_probs=143.5
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcC
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G 143 (505)
+++...|..-|+||---.+ .-++.++.-.....+|--++|++|+--..- .++|..|+ .||++.+-.-
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~lM----iGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCLM----IGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceEE----ecCcHHHHHH
Confidence 4455555667888876544 245555554444567888999999853221 23455443 4555443321
Q ss_pred CcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHH
Q 010652 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAE 222 (505)
Q Consensus 144 ~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~ 222 (505)
- +..++.+.+ ..-| ..|+||.|+|||+|||||+|||++||+++|.+.++++.- .+|.+++.+
T Consensus 145 ~-------~pif~~lA~--ge~G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~ 207 (300)
T COG1023 145 L-------EPIFKALAP--GEDG--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAE 207 (300)
T ss_pred H-------HHHHHhhCc--CcCc--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 1 111222211 0334 789999999999999999999999999999999999764 144556655
Q ss_pred HHHHhccCC-cchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccchH
Q 010652 223 IFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301 (505)
Q Consensus 223 ~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~~~ 301 (505)
+ ||.|+ ..|||++.+...+++ + .-++.+.+.+...|+|+||+++|.++|||+|+|+.|+..||.|...+.
T Consensus 208 v---W~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~ 278 (300)
T COG1023 208 V---WNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT 278 (300)
T ss_pred H---HhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhh
Confidence 5 88865 679999999988875 2 267899999999999999999999999999999999999999966543
No 33
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.84 E-value=2.6e-19 Score=183.02 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=158.9
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHH-----HHHHHhhcccCCCCeeeeC
Q 010652 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKV-----DETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgiIGlG~m--------------------G~~lA~~La~~G~~V~v~dr~~~~~-----~~~~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||.+|+++||+|++|||++++. +.+.+. ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 57888888864 8889999999999999999998743 333332 356778
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHH----HcCCeEEc-CCCCC
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEAS----QKGLLYLG-MGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~----~~gi~~v~-~pvsg 135 (505)
++.+++++ +|+||+|+|.+..++++++++.+.++++.+|||+||+.+... +.+.+.+. ..|+++.+ +++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999976689999999999999999999999988877 55555554 33665553 45555
Q ss_pred ChhhhhcCCcccCC--------CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHH
Q 010652 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~i~~g--------g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
++.+.. .+|.| ++++.+++++++|+.++ ..+++++ .|.++.+|+++|.+....++.++|++.
T Consensus 151 ae~g~l---~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~ 220 (342)
T PRK12557 151 TPQHGH---YVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYS 220 (342)
T ss_pred cccchh---eEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 34444 49999999999999999 6787777 599999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 010652 208 VLKHVGGLSNAELAEIF 224 (505)
Q Consensus 208 l~~~~g~l~~~~i~~~~ 224 (505)
++++.| .+++++.+-+
T Consensus 221 l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 221 VGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHhC-CCHHHHHHHH
Confidence 999999 8888876654
No 34
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=2.1e-19 Score=180.31 Aligned_cols=207 Identities=19% Similarity=0.215 Sum_probs=167.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~---------------~~~~g~~~i~~~~s~~e~v~~ 69 (505)
+.++|||||||++|.++|..++++|++|.++|+++.+++.+... ....| +++.+++++++.+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~- 84 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE- 84 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc-
Confidence 34789999999999999999999999999999999998776531 11112 4677777777653
Q ss_pred cCCCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCeE-EcCCCCCCh
Q 010652 70 IQRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLY-LGMGVSGGE 137 (505)
Q Consensus 70 l~~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~-v~~pvsgg~ 137 (505)
||++++|||++- .+.+..+.+.+.|++|++||--||++|++|+++...+.+. |..| .|..+.-.|
T Consensus 85 ---~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 85 ---CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ---CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999862 4677778999999999999999999999999999988764 4444 233333344
Q ss_pred hhhhcCC---------cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHH
Q 010652 138 EGARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 138 ~~a~~G~---------~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
+....|. .++.|-+++..+.+..+++.+- ..+..+.+.-.++++|+..|.++..++++++|...+
T Consensus 162 ERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444442 3444557788888999999998 567788888999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 010652 209 LKHVGGLSNAELAEIF 224 (505)
Q Consensus 209 ~~~~g~l~~~~i~~~~ 224 (505)
+.+.| +|..++.++.
T Consensus 236 ~~~~G-IdvwevIeaA 250 (436)
T COG0677 236 CNAMG-IDVWEVIEAA 250 (436)
T ss_pred HHHhC-CcHHHHHHHh
Confidence 99999 9999988875
No 35
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.4e-20 Score=184.63 Aligned_cols=122 Identities=10% Similarity=0.147 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
++++|||||||||||||+.||.++|.|++|+.+.+..+ .++++++.-||.| ++.|+|+++++++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 46899999999999999999999999999998776555 6788888889999 99999999999999976666668999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
.+.+.+.+|+++ +|+++.|+++|+|+|+|.+|++ ++++++.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999 89998888754
No 36
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=5e-18 Score=171.32 Aligned_cols=254 Identities=17% Similarity=0.149 Sum_probs=194.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~---------------~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||.|++|...+..|++.||+|+.+|++++|++.+.+. ....| +++++++.++.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 689999999999999999999999999999999998766532 11111 48899999999987
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhc
Q 010652 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~ 142 (505)
+|++|++||++. .++.+++.+.+.++..++||.-||+.++++++..+.+.+....= +..|...|+..++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998874 47888899999998889999999999999999988776542110 4455566777777
Q ss_pred CC---------cccCCCCH-HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 010652 143 GP---------SLMPGGSF-EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (505)
Q Consensus 143 G~---------~i~~gg~~-e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~ 212 (505)
|. .+++|... ++.+.++++++.+..+ .+.+.+-....++++|+..|++.+.-++.++|...+|++.
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 73 56677754 4577788888776431 3334444568899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 213 g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
| +|.+++.+.+. ++.. |-...+...-.|++.++-+.++ -.+..|.++|.+.+++.+.+
T Consensus 231 g-~D~~~V~~gIG------lD~R---IG~~fl~aG~GyGGsCfPKD~~----------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG------LDPR---IGNHFLNAGFGYGGSCFPKDTK----------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC------CCch---hhHhhCCCCCCCCCcCCcHhHH----------HHHHHHHhcCCchHHHHHHH
Confidence 9 99999988762 1211 1112233333466666555443 34678999999999988754
No 37
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.82 E-value=6.1e-19 Score=189.82 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=151.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~---------------~~~g~~~i~~~~s~~e~v~~l 70 (505)
.++|||||+|.||.+||.+|+++|++|++||+++++.+.+.+.. ...+ +++.++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 46899999999999999999999999999999999876653210 0001 36778899888877
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccC
Q 010652 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMP 148 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~ 148 (505)
+|+|++++|+..++++.+ .++.+.++++ .||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 999999999987777754 6777766655 5667777776544 666677777888888887632 3446 6677
Q ss_pred CCC---HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHH
Q 010652 149 GGS---FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL-ISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 149 gg~---~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~-i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
+|+ ++++++++++++.+| +.++++++ .++|.+...+++. ++|++.|+++.| ++++++++++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG------~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~~ 217 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIG------MKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDVI 217 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 775 799999999999999 78888874 5555555556666 499999999988 9999999997
Q ss_pred H
Q 010652 225 D 225 (505)
Q Consensus 225 ~ 225 (505)
.
T Consensus 218 ~ 218 (495)
T PRK07531 218 R 218 (495)
T ss_pred h
Confidence 4
No 38
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.81 E-value=8.2e-18 Score=178.79 Aligned_cols=254 Identities=12% Similarity=0.067 Sum_probs=182.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhccc---C---------CCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE---G---------QLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~---g---------~~~i~~~~s~~e~v~~l~ 71 (505)
+|+|+|||+|.+|..+|..|+++| ++|+++|+++++++.+.+....- + ..++.+++++++.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 368999999999999999999884 78999999999998876432100 0 0036777888877776
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--C--CeEEcCCC
Q 010652 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--G--LLYLGMGV 133 (505)
Q Consensus 72 ~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--g--i~~v~~pv 133 (505)
+|++|+|||++. .++++++.+.+.+++|++||..||..|.+++++...+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999997554 5778889999999999999999999999999998887763 4 33344553
Q ss_pred CCChhhh----hcCCcccCCCC-----HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHH
Q 010652 134 SGGEEGA----RHGPSLMPGGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 134 sgg~~~a----~~G~~i~~gg~-----~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
.=-+..+ .+-+.+++||. +++.+.++.+++.+.. ..++.+.+..+++++|++.|.+.+..+++++|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NE 232 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNA 232 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 12225667873 3357788888888861 13455667799999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhccCC--cchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCC
Q 010652 205 AYDVLKHVGGLSNAELAEIFDEWNKGE--LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (505)
Q Consensus 205 a~~l~~~~g~l~~~~i~~~~~~~~~g~--~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp 282 (505)
...+|++.| +|..++.+.+ +... +..| +...-.+++.++- +|.. ..+..|.++|++
T Consensus 233 la~lce~~g-iD~~eV~~~~---~~d~rig~~~--------l~PG~G~GG~Clp----kD~~------~L~~~a~~~g~~ 290 (473)
T PLN02353 233 MSALCEATG-ADVSQVSHAV---GKDSRIGPKF--------LNASVGFGGSCFQ----KDIL------NLVYICECNGLP 290 (473)
T ss_pred HHHHHHHhC-CCHHHHHHHh---CCCCcCCCCC--------CCCCCCCCCcchh----hhHH------HHHHHHHHcCCc
Confidence 999999998 9999998876 2211 1122 2222224444333 3331 445678889988
Q ss_pred --cchhHHH
Q 010652 283 --APTIAAS 289 (505)
Q Consensus 283 --~p~i~~A 289 (505)
.+++.++
T Consensus 291 ~~~~l~~~~ 299 (473)
T PLN02353 291 EVAEYWKQV 299 (473)
T ss_pred hHHHHHHHH
Confidence 6676654
No 39
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.9e-18 Score=173.84 Aligned_cols=193 Identities=13% Similarity=0.150 Sum_probs=146.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~~ 69 (505)
.+|+|||+|.||.++|.+|+++|++|++||+++++++++.+. +...|. .+++.+.++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999988776431 111000 035667888888776
Q ss_pred cCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEE-EeCCCCChhhHHHHHHHHH-HcCCeEEcCCCCCChhhhhcCC-c
Q 010652 70 IQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCI-IDGGNEWYLNTERRIHEAS-QKGLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~ii-Id~st~~~~~t~~~~~~l~-~~gi~~v~~pvsgg~~~a~~G~-~ 145 (505)
+|+||+|+|++..++.. +.++.+.++++.++ +++||..+....+..+... ..|.||+ .|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998776654 47788888888866 7888877755443332211 1478888 787664 4 6
Q ss_pred ccCCC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 146 LMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 146 i~~gg---~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.|++| +++++++++++++.++ +.++++++ ..|.. .|.+.+ .+++|++.++++.. .++++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d-~~Gf~----~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~ 215 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMG------KETVVVNE-FPGFV----TSRISA---LVGNEAFYMLQEGV-ATAEDIDK 215 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecC-cccHH----HHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 67777 9999999999999999 78899975 44544 455544 46699999999876 78999998
Q ss_pred HHH
Q 010652 223 IFD 225 (505)
Q Consensus 223 ~~~ 225 (505)
++.
T Consensus 216 ~~~ 218 (288)
T PRK09260 216 AIR 218 (288)
T ss_pred HHH
Confidence 863
No 40
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.79 E-value=2.2e-17 Score=164.14 Aligned_cols=236 Identities=16% Similarity=0.123 Sum_probs=165.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. ++....++.+++++ +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-------GVKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-------CCEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 9999998777654 25667888888876 999999997
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~gg~~e~~~~v~ 159 (505)
+ ..+++++.++.+.+.++++||+..++.... .+.+.+... +++. +|..+...+..... ....+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 679999999988888899988775554333 223332221 5664 67666554433322 334556899999999
Q ss_pred HHHHHhhcccCCCCcEEEeC---------CCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 010652 160 DILQKVAAQVDDGPCVTYIG---------EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG 230 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G---------~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g 230 (505)
++|+.+| . +++++ ..|+|... .+..++.++|+ +.+.| +++++..+++.. +
T Consensus 146 ~l~~~~G------~-~~~~~e~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~---~ 204 (266)
T PLN02688 146 TLFGAVG------K-IWVVDEKLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAG-LPRDVALSLAAQ---T 204 (266)
T ss_pred HHHHhCC------C-EEEeCHHHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---H
Confidence 9999999 6 77763 35666553 56677888888 67778 999999998743 2
Q ss_pred CcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 231 ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 231 ~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
...++. .+...+ .. .-+.+......-||..-.+....+.|++-.++.+
T Consensus 205 ~~gs~~------l~~~~~-~~---~~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a 252 (266)
T PLN02688 205 VLGAAK------MVLETG-KH---PGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNA 252 (266)
T ss_pred HHHHHH------HHHhcC-CC---HHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHH
Confidence 222222 122111 11 2233344445556766667777788888666553
No 41
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.77 E-value=2.2e-17 Score=169.97 Aligned_cols=262 Identities=19% Similarity=0.167 Sum_probs=164.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC----------CCeeeeCCHHHHHhhcCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ----------LPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~----------~~i~~~~s~~e~v~~l~~ad 74 (505)
|+|+|+|||+|.||..+|..|+++||+|++|||++. .+.+.+.+..... .++....++ +.+. .+|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TAD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCC
Confidence 357999999999999999999999999999999753 3555543321000 012233444 3333 399
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC--C---CCCChhhhh---cCCcc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM--G---VSGGEEGAR---HGPSL 146 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~--p---vsgg~~~a~---~G~~i 146 (505)
+||++||+. ..+++++.+.+.+.++.+|++++|+. ...+.+.+.+.+. +++++ + +++++..+. .|+ +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999996 57888999999999999999998865 3344555555432 23332 2 343333333 333 2
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHH--------------------HHHHHHHH
Q 010652 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISEAY 206 (505)
Q Consensus 147 ~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~--------------------~~~i~Ea~ 206 (505)
..+ +.+.++++.++|+..+ ..+.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred Eec-CCchHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 222 2355788999999888 67889999999999999999743333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccC--CcchhhHhhhhhhcccccccCCchhHHHHHhhhCCC-------ccHHHHHHHHH
Q 010652 207 DVLKHVGGLSNAELAEIFDEWNKG--ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMK-------GTGKWTVQQAA 277 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~~~~~~~~g--~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~k-------gtg~~~~~~A~ 277 (505)
.++++.| ++++.+.++...+... .+.+++++.....+...+ +... ..+++|.... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999998 9876543322111000 122333332222111111 1100 1122222100 012 6889999
Q ss_pred HcCCCcchhHHH
Q 010652 278 ELSVAAPTIAAS 289 (505)
Q Consensus 278 ~~gvp~p~i~~A 289 (505)
++|+|+|+...+
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998865
No 42
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=2.2e-17 Score=165.66 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=149.7
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhcccCC------CCeeeeCCH
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREGQ------LPLTGHYTP 63 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~-----------~~~~~~~g~------~~i~~~~s~ 63 (505)
|+.++ .+|||||+|.||.+||.+++.+||+|++||++++.+++. .+.+..... .+++.++++
T Consensus 1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDAI-QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCCc-cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 55433 589999999999999999999999999999999987662 222210000 045677888
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHH-HHHhhcc-CCCCEEEeCCCCChhhHHHHHHHHHHc--CCeEEc-CCCCCChh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEE 138 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~v~-~pvsgg~~ 138 (505)
++ +++ +|+||.|+|++.+++..+ ..+...+ +++.++++.|++.+.+........+++ |.||++ +|+++..+
T Consensus 80 ~~-~~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE 155 (286)
T PRK07819 80 GD-FAD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE 155 (286)
T ss_pred HH-hCC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE
Confidence 54 454 999999999999998877 4555555 789999999888877766655555556 889988 56666553
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHH-HhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 139 GARHGPSLMPGGSFEAYNNIRDILQ-KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 139 ~a~~G~~i~~gg~~e~~~~v~~ll~-~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
- ....++++++++++.+++. .++ +.++.+++ ..|..+ |.+ ....++|++.++++.. .++
T Consensus 156 l-----v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi~----nRi---~~~~~~Ea~~ll~eGv-~~~ 215 (286)
T PRK07819 156 L-----VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGFVV----NAL---LVPYLLSAIRMVESGF-ATA 215 (286)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCChHH----HHH---HHHHHHHHHHHHHhCC-CCH
Confidence 1 3346689999999999988 589 77888864 455544 444 4456699999999876 789
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
++++.++.
T Consensus 216 ~dID~~~~ 223 (286)
T PRK07819 216 EDIDKAMV 223 (286)
T ss_pred HHHHHHHH
Confidence 99999873
No 43
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.8e-17 Score=178.39 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=145.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhcccC------CCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREG------QLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~-----------~~~~~~~g------~~~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||.+||.+|+.+||+|++||++++++++. .+.+.-.. -.+++.+.+++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 4679999999999999999999999999999999988764 22221000 00367888887754
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEE-eCCCCChhhHHHHHHHHH--H--cCCeEEc-CCCCCChhhhh
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS--Q--KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~t~~~~~~l~--~--~gi~~v~-~pvsgg~~~a~ 141 (505)
+ ||+||.|||++.++++.+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 86 ~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------ 153 (507)
T PRK08268 86 D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------ 153 (507)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe------
Confidence 4 999999999999999887 56767777888884 78877764 3444333 2 3899999 77772
Q ss_pred cCCcccCC---CCHHHHHHHHHHHHHhhcccCCCCcEEEeCC-CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 142 HGPSLMPG---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 142 ~G~~i~~g---g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
...+++ +++++++++.++++.++ +.++++|+ +| .+.|.+.. ..++|++.++++.+ .++
T Consensus 154 --LvEvv~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~ 215 (507)
T PRK08268 154 --LVEVVSGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADP 215 (507)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCH
Confidence 234454 59999999999999999 88999986 34 35666654 47799999999988 999
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
+++++++.
T Consensus 216 ~~iD~al~ 223 (507)
T PRK08268 216 ATIDAILR 223 (507)
T ss_pred HHHHHHHH
Confidence 99999974
No 44
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=2.2e-17 Score=165.28 Aligned_cols=185 Identities=14% Similarity=0.201 Sum_probs=132.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.|+|+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++....++.++++. +|+||+||
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav 73 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAM 73 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEe
Confidence 368999999999999999999998 78999999864 556665431 24567788888776 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeEEcCCCCCC---hhhhh-cCCcccCCCC---H
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGMGVSGG---EEGAR-HGPSLMPGGS---F 152 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~v~~pvsgg---~~~a~-~G~~i~~gg~---~ 152 (505)
|+. .+.++++++.+.+.++++||++ ++..+.+.++ .+ ..+ +||+++ ...+. .|.+++++++ +
T Consensus 74 ~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~ 143 (279)
T PRK07679 74 KPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKD-----VPIIRAMPNTSAAILKSATAISPSKHATA 143 (279)
T ss_pred CHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCH
Confidence 985 6888889998888889999997 5555443433 22 222 333333 23444 3347776665 6
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEE------E--eCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~------~--~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
+.++.++++|+.+| .++. + ++..|+|... .+..+..+.|+ +.+.| ++.++..+++
T Consensus 144 ~~~~~v~~l~~~~G------~~~~v~e~~~~~~~a~~Gsgpa~-------~~~~~eal~e~---~~~~G-l~~~~a~~~~ 206 (279)
T PRK07679 144 EHIQTAKALFETIG------LVSVVEEEDMHAVTALSGSGPAY-------IYYVVEAMEKA---AKKIG-LKEDVAKSLI 206 (279)
T ss_pred HHHHHHHHHHHhCC------cEEEeCHHHhhhHHHhhcCHHHH-------HHHHHHHHHHH---HHHcC-CCHHHHHHHH
Confidence 78899999999999 5444 4 5666666652 33344444444 77888 9999999987
Q ss_pred HH
Q 010652 225 DE 226 (505)
Q Consensus 225 ~~ 226 (505)
..
T Consensus 207 ~~ 208 (279)
T PRK07679 207 LQ 208 (279)
T ss_pred HH
Confidence 53
No 45
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.75 E-value=3.9e-17 Score=175.33 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=141.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||..||.+|+++||+|++||++++++++..+. ....|.. +++.+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 3589999999999999999999999999999999987654211 0111100 467788887654
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH----HcCCeEEc-CCCCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~----~~gi~~v~-~pvsgg~~~a~~ 142 (505)
+ +|+||.|||++.++++.+ .++.+.++++.+|. ++|+....+ ++.+.+. ..|.||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ila-snTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------- 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIA-SNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------- 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-ECCCCCCHH-HHHHhcCcccceEEEeccCccccCc-------
Confidence 4 999999999998998876 55666666655544 333333333 3444443 34899999 67773
Q ss_pred CCcccCCC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 143 GPSLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 143 G~~i~~gg---~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
...+++| ++++++.+.++++.++ +.++++|+ ..|. +.|.+. ...++|++.++++.+ .++++
T Consensus 152 -LvEvv~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d-~pGf----i~Nrl~---~~~~~EA~~l~e~g~-a~~~~ 215 (503)
T TIGR02279 152 -LVEVVSGLATAAEVAEQLYETALAWG------KQPVHCHS-TPGF----IVNRVA---RPYYAEALRALEEQV-AAPAV 215 (503)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CeeeEeCC-CCCc----HHHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 2456777 9999999999999999 88999986 2233 556555 357899999999988 99999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
++++++
T Consensus 216 ID~al~ 221 (503)
T TIGR02279 216 LDAALR 221 (503)
T ss_pred HHHHHH
Confidence 999985
No 46
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.74 E-value=2.5e-17 Score=164.92 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=135.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||.++|..|.++|++|++||++++..+++.+.+. +....+..+.+.. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 47999999999999999999999999999999998888776542 1222233344554 99999999985 67
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCCh-hhhhcCC-cccC----------CCCHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 153 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~-~~a~~G~-~i~~----------gg~~e 153 (505)
.++++++.+.+.++.+|+|+++........... ....|++ +|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~----~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK----LHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH----hhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 788899999999999999999887654433332 2335887 6998876 4444433 2222 36889
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHH
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
.++.++++++.+| ..++++++.+....++++.+...+....+++
T Consensus 147 ~~~~v~~l~~~lG------~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~ 190 (279)
T PRK07417 147 ALAIVEELAVSLG------SKIYTADPEEHDRAVALISHLPVMVSAALIQ 190 (279)
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHcchHHHHHHHHHH
Confidence 9999999999999 6788999999999999998887665544433
No 47
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.72 E-value=1.7e-16 Score=158.40 Aligned_cols=288 Identities=17% Similarity=0.176 Sum_probs=198.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhhcCCCcEEEE
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~-------~i~~~~s~~e~v~~l~~advIil 78 (505)
+++|+|||.|.||++||..|+++||+|.+|.|+++.++++.....+...+ ++.++++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 36899999999999999999999999999999999998887653322111 57778899999987 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHH-HHHHHc-CCeE---EcCCCCCChhhhhcCC-ccc-CCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI-HEASQK-GLLY---LGMGVSGGEEGARHGP-SLM-PGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~-~~l~~~-gi~~---v~~pvsgg~~~a~~G~-~i~-~gg~ 151 (505)
.||. ..++++++++.+.+.++.+++.++.+.-..+.++. +.+.+. +.+. +..| +-..+-++.-| .+. .+-|
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGP-s~A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGP-SFAKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECc-cHHHHHhcCCCcEEEEecCC
Confidence 9999 58999999998899999999999998776555544 444432 3222 2222 22345555556 444 4557
Q ss_pred HHHHHHHHHHHHHhhccc-----------CC-CCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 152 FEAYNNIRDILQKVAAQV-----------DD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~-----------~~-~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
.+..++++.+|..=.-.+ .| -|+++.++. |...-+.+-.|+-...+...++|+-++....| -.++.
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 788888888885422110 00 044444432 66666778889999999999999999999999 66775
Q ss_pred HHHHHHHhccCCcchhhHhhhhhhcccccc----cCCchhHHHHHhhhCCCccHHHHHH----HHHHcCCCcchhHHHHH
Q 010652 220 LAEIFDEWNKGELESFLVEITADIFKVKDE----YGEGELVDKILDKTGMKGTGKWTVQ----QAAELSVAAPTIAASLD 291 (505)
Q Consensus 220 i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~----~~~~~~ld~i~~~~~~kgtg~~~~~----~A~~~gvp~p~i~~A~~ 291 (505)
+..+ .|.++ |+-++.....++.. ...+..++..+...+|.-+|..++. .|+++|+++|+.++ |
T Consensus 234 ~~gL-----sGlGD--LilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-V- 304 (329)
T COG0240 234 FMGL-----SGLGD--LILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-V- 304 (329)
T ss_pred hccc-----ccccc--eeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-H-
Confidence 5432 22222 11111111111111 1233466777778899999988774 67889999999875 4
Q ss_pred HHHHcccchHHHHHHHHh
Q 010652 292 CRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~ 309 (505)
.|.+-..++.+.....++
T Consensus 305 y~vl~~~~~~~~~~~~L~ 322 (329)
T COG0240 305 YRVLYEGLDPKEAIEELM 322 (329)
T ss_pred HHHHhCCCCHHHHHHHHh
Confidence 455555555555555554
No 48
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.72 E-value=2.6e-16 Score=157.26 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=141.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|||+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 479999999999999999999996 78999999998887765432 12345677754 3 99999999995
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCC----hhhhh----cCC-cccCC---CC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 151 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg----~~~a~----~G~-~i~~g---g~ 151 (505)
.+.+++.++.+ +.++.+|+|.|++.........+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788899999 889999999988765544433322 23568886 99875 44332 454 44543 57
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~ 223 (505)
++.++.++++|+.+| ..++++++.+....++++++.-. ....+++++.. .+ .+.+++.++
T Consensus 146 ~~~~~~v~~l~~~~G------~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLG------MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhC------CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 788999999999999 67999999999999999988854 44445555541 24 566655443
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=3.4e-16 Score=158.59 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=141.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------ccc----CC--CCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HRE----GQ--LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~----g~--~~i~~~~s~~e~v~~l~~ 72 (505)
..+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+.. ... +. .++..++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 35799999999999999999999999999999998765543210 000 00 046777888888876
Q ss_pred CcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCC-CCChhhhhcCCcc
Q 010652 73 PRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGARHGPSL 146 (505)
Q Consensus 73 advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pv-sgg~~~a~~G~~i 146 (505)
||+|+.++|...+++..+ .++.+.++++. ||.+||+.. ...++.+.+... |.||+..|- ..-. -+
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV-------EV 154 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV-------EV 154 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE-------EE
Confidence 999999999998888776 77888887776 666666643 444555555432 556665431 1111 24
Q ss_pred cCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 147 MPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 147 ~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
++| .++++++.+..+++.+| +.++.+...-.|+.+ |.+.. .++.|++.++++.. .++++|+.++
T Consensus 155 v~g~~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pGFi~----NRl~~---a~~~EA~~lv~eGv-as~edID~a~ 220 (321)
T PRK07066 155 LGGERTAPEAVDAAMGIYRALG------MRPLHVRKEVPGFIA----DRLLE---ALWREALHLVNEGV-ATTGEIDDAI 220 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC------CEeEecCCCCccHHH----HHHHH---HHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 444 48899999999999999 778888655666654 55544 45699999999987 9999999997
Q ss_pred H
Q 010652 225 D 225 (505)
Q Consensus 225 ~ 225 (505)
+
T Consensus 221 ~ 221 (321)
T PRK07066 221 R 221 (321)
T ss_pred H
Confidence 4
No 50
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=6e-16 Score=157.30 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=138.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----hcc-cCC------CCeeeeCCHHHHHhhcCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----AHR-EGQ------LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-----~~~-~g~------~~i~~~~s~~e~v~~l~~ 72 (505)
.+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +.. ... -++..++++++++++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 79 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG--- 79 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---
Confidence 35689999999999999999999999999999999988776542 100 000 024566778877766
Q ss_pred CcEEEEecCCCch-HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCCccc
Q 010652 73 PRSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGPSLM 147 (505)
Q Consensus 73 advIil~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~~i~ 147 (505)
+|+||+|||+..+ ...++.++.+.++++.+|+..+++. . ..++.+.+... ++||.++|..+ ....++
T Consensus 80 aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~-~-~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~i~ 151 (311)
T PRK06130 80 ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL-P-ITAIAQAVTRPERFVGTHFFTPADVI------PLVEVV 151 (311)
T ss_pred CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC-C-HHHHHhhcCCcccEEEEccCCCCccC------ceEEEe
Confidence 9999999999754 4566778877776666655444433 2 33555555321 34444433221 111344
Q ss_pred CCC--CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 148 PGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 148 ~gg--~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
+|. ++++++.++++++.+| +.++++++...|. +++|.+ ...++|++.++++.+ ++++++++++.
T Consensus 152 ~g~~t~~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 152 RGDKTSPQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 443 7899999999999999 7888998766666 555553 467899999999988 99999999873
No 51
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=6.8e-16 Score=155.56 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=137.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-------~~g~----------~~i~~~~s~~e~v~ 68 (505)
.++|+|||+|.||.+||.+|+++|++|++||+++++++.+.+... ..|. .+++..+++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 468999999999999999999999999999999998776442100 0000 02566677754 44
Q ss_pred hcCCCcEEEEecCCCchHHH-HHHHHhhccCCCCEEE-eCCCCChhhHHHHHHHHHH----cCCeEEc-CCCCCChhhhh
Q 010652 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCII-DGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iiI-d~st~~~~~t~~~~~~l~~----~gi~~v~-~pvsgg~~~a~ 141 (505)
+ +|+||+|+|+..+++. ++.++.+.+.++.+|+ ++|+..+ + ++++.+.. .|+||++ +|++++.+-
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~vei-- 154 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVEL-- 154 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEEE--
Confidence 4 9999999999866654 4588888898998887 4444433 2 45554431 2778888 455544320
Q ss_pred cCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010652 142 HGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 142 ~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
....++++++++.+.++++.+| +.++++++.+ | +++++. ...+++|++.++.+.- .++++++
T Consensus 155 ---~~g~~t~~~~~~~~~~~~~~~g------k~~v~~~d~p-g---~i~nRl----~~~~~~ea~~~~~~g~-~~~~~iD 216 (292)
T PRK07530 155 ---IRGIATDEATFEAAKEFVTKLG------KTITVAEDFP-A---FIVNRI----LLPMINEAIYTLYEGV-GSVEAID 216 (292)
T ss_pred ---eCCCCCCHHHHHHHHHHHHHcC------CeEEEecCcC-C---hHHHHH----HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 1124689999999999999999 7888887633 3 344333 3455799999999865 6899999
Q ss_pred HHH
Q 010652 222 EIF 224 (505)
Q Consensus 222 ~~~ 224 (505)
.++
T Consensus 217 ~~~ 219 (292)
T PRK07530 217 TAM 219 (292)
T ss_pred HHH
Confidence 886
No 52
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.69 E-value=8.5e-16 Score=155.07 Aligned_cols=192 Identities=12% Similarity=0.183 Sum_probs=136.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhc--------ccCCCCeeeeCCHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAH--------REGQLPLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~-----------~~~~~--------~~g~~~i~~~~s~~e~ 66 (505)
+++|||||+|.||.+||.+|+.+|++|++||+++++++.. .+.+. ..+ .+...++. +.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-~~ 80 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLG--RIRCTTNL-EE 80 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--ceEeeCCH-HH
Confidence 4579999999999999999999999999999999887542 22110 000 23444455 44
Q ss_pred HhhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEE-eCCCCChhhHHHHHHH-HHHcCCeEEcCCCCCChhhhhcC
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHE-ASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~t~~~~~~-l~~~gi~~v~~pvsgg~~~a~~G 143 (505)
++. ||+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+.+..+.... ..-.|+||+++|..+.-
T Consensus 81 ~~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------ 151 (295)
T PLN02545 81 LRD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------ 151 (295)
T ss_pred hCC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------
Confidence 555 999999999888877665 67888888888886 6666654433322211 11137788888765321
Q ss_pred CcccC--CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010652 144 PSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 144 ~~i~~--gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
.-++. ++++++++.++++|+.+| ++++++++ ..|. +.|.+.. ..++|++.++++.. .++++++
T Consensus 152 veiv~g~~t~~e~~~~~~~ll~~lG------~~~~~~~d-~~g~----i~nri~~---~~~~ea~~~~~~gv-~~~~~iD 216 (295)
T PLN02545 152 VEIIRGADTSDEVFDATKALAERFG------KTVVCSQD-YPGF----IVNRILM---PMINEAFYALYTGV-ASKEDID 216 (295)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 12333 468999999999999999 77888876 3343 4455544 45699999999977 8899998
Q ss_pred HHH
Q 010652 222 EIF 224 (505)
Q Consensus 222 ~~~ 224 (505)
.++
T Consensus 217 ~~~ 219 (295)
T PLN02545 217 TGM 219 (295)
T ss_pred HHH
Confidence 875
No 53
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.69 E-value=1.1e-15 Score=153.93 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=140.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh----------cccCC----------CCeeeeCCHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQ----------LPLTGHYTPRD 65 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~----------~~~g~----------~~i~~~~s~~e 65 (505)
..+|+|||+|.||.++|..|+.+|++|++||+++++++...+.. ...|. .++..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 35899999999999999999999999999999999876533210 00000 023445555 3
Q ss_pred HHhhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEc-CCCCCChhh
Q 010652 66 FVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEG 139 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~-~pvsgg~~~ 139 (505)
.+++ +|+||+++|+...+ +.++.++.+.++++.+|+..+++. ...++.+.+... |.||++ ++++++.+.
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 4454 99999999997654 455578888888888887555543 444555555432 778887 677776552
Q ss_pred hhcCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 140 ARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 140 a~~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
..|+ ..++++++.+.++++.+| +.++++++.+.....|+++| +++|++.++++.. .++++
T Consensus 157 -~~g~----~T~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~~ 216 (291)
T PRK06035 157 -VRAA----LTSEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIKD 216 (291)
T ss_pred -eCCC----CCCHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHHH
Confidence 2333 138999999999999999 88999987666666666654 4589999998865 78999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
|+.++.
T Consensus 217 iD~~~~ 222 (291)
T PRK06035 217 IDEMCK 222 (291)
T ss_pred HHHHHh
Confidence 999863
No 54
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=7.9e-15 Score=147.47 Aligned_cols=196 Identities=13% Similarity=0.222 Sum_probs=139.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccC-----------CCCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREG-----------QLPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g-----------~~~i~~~~s~~e~v 67 (505)
.++|+|||+|.||.++|..|+++|++|++||++++.+++..+.. ...+ ..+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 46899999999999999999999999999999998766654320 0000 00456788888877
Q ss_pred hhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC--
Q 010652 68 LSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-- 144 (505)
++ +|+||+|+|+..++ ..+++++.+.++++.+|++.+++.+.. ++.+.+. +.-+|+++.....+ ...+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~-~~~r~vg~Hf~~p~---~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEATG-RPEKFLALHFANEI---WKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhcC-CcccEEEEcCCCCC---CcCCeE
Confidence 76 99999999987544 455688888888888886655544332 3333332 22345554332221 1223
Q ss_pred ccc--CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 145 SLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~i~--~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++ .+.++++++.+..+++.+| +.++.+.+...|..+ |.+ ...+++|++.++++.. .++++|+.
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~-a~~~~iD~ 219 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGV-ADPETIDK 219 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 344 3578999999999999999 778888766777665 444 3456699999999876 89999998
Q ss_pred HH
Q 010652 223 IF 224 (505)
Q Consensus 223 ~~ 224 (505)
++
T Consensus 220 a~ 221 (287)
T PRK08293 220 TW 221 (287)
T ss_pred HH
Confidence 86
No 55
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.66 E-value=6.1e-15 Score=147.91 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-----------HHHhhcccC------CCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREG------QLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~-----------~~~~~~~~g------~~~i~~~~s~~e~v~ 68 (505)
+++|+|||+|.||.++|..|+++|++|++||++++++++ +.+.+.... ..++..+++.++ ++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 358999999999999999999999999999999998753 222221000 003555667654 44
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEc-CCCCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~-~pvsgg~~~a~~ 142 (505)
+ ||+||+|+|+...++ +++.++.+.++++.+|+..+++.+ .+ .+.+.+..+ +.||.. +++..+.+
T Consensus 82 ~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~-~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve---- 152 (282)
T PRK05808 82 D---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS-IT-ELAAATKRPDKVIGMHFFNPVPVMKLVE---- 152 (282)
T ss_pred c---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC-HH-HHHHhhCCCcceEEeeccCCcccCccEE----
Confidence 4 999999999876665 677889998988887754444432 22 555555322 455555 34444332
Q ss_pred CCccc--CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~--~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
++ .+++++.++.+.++++.+| +.++++++ ..|.. .|.+. ..+++|+..++++.- .++++|
T Consensus 153 ---v~~g~~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g~i----~~Ri~---~~~~~ea~~~~~~gv-~~~~di 214 (282)
T PRK05808 153 ---IIRGLATSDATHEAVEALAKKIG------KTPVEVKN-APGFV----VNRIL---IPMINEAIFVLAEGV-ATAEDI 214 (282)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-ccChH----HHHHH---HHHHHHHHHHHHhCC-CCHHHH
Confidence 33 4568999999999999999 88899864 55554 45554 455699999999876 789999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 215 D~~~~ 219 (282)
T PRK05808 215 DEGMK 219 (282)
T ss_pred HHHHH
Confidence 98863
No 56
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.65 E-value=3.1e-15 Score=155.57 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=141.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++|+||| +|.||.++|+.|.++||+|++||+++. .++++++.+ +|+||+|+|..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~- 153 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH- 153 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH-
Confidence 46899998 999999999999999999999998631 244556665 99999999996
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cccCCC-CHHHHHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYNNIRDI 161 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i~~gg-~~e~~~~v~~l 161 (505)
....+++++.+ +++|.+|+|+|++.+.....+.+.+. ..|+ .+|+.|.+.....|. .+++++ ++++++.++++
T Consensus 154 ~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 154 LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 56788888988 89999999999987766655554332 2588 579999876666666 455555 67889999999
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
++.+| ..++++++.+....+++++ .+ ..+..++++..+++ .+ .+.+++.+
T Consensus 230 ~~~lG------~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 230 IQVWG------ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHCC------CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999 6899999999999999997 44 66777788888876 55 77776543
No 57
>PRK07680 late competence protein ComER; Validated
Probab=99.65 E-value=4.2e-14 Score=141.15 Aligned_cols=194 Identities=17% Similarity=0.166 Sum_probs=132.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..++..|.++|+ +|.+|||++++.+.+.+... ++....+..+++.. +|+||+++|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 25667788888776 9999999987
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cccCC--CCHHHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNNIR 159 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~v~ 159 (505)
..+.++++++.+.+.++++||++++.. ....+.+.+..+.++++. +.+..+..|. .++.| .+++.++.++
T Consensus 73 -~~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 -LDIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred -HHHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 578999999999998899999999865 344555554433344443 2334556777 44555 4667889999
Q ss_pred HHHHHhhcccCCCCcEEEeCCCCchhhhhhHh--HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
++|+.+| . ++++.+.-.-...-+.+ -++.+..+..+.++. .++.| ++.++..++..
T Consensus 146 ~ll~~~G------~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~ 203 (273)
T PRK07680 146 RLFSNIS------T-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLAS 203 (273)
T ss_pred HHHHcCC------C-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHH
Confidence 9999999 2 44554320000000111 123333334344432 24467 99999888764
No 58
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.64 E-value=1.5e-14 Score=148.92 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=186.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC----CC----CeeeeCCHHHHHhhcCCCcEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----QL----PLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g----~~----~i~~~~s~~e~v~~l~~advI 76 (505)
.+|||+|||+|.||..+|..|+++| +|.+|.|+++.++.+.+.+.+.. .. ++...+++++.++. +|+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlV 81 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVV 81 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEE
Confidence 3579999999999999999999999 78999999999888876432100 01 34567788877766 9999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH-HHHHHH----cCCeEEcCCCCCChhhhhcCC-cc-cCC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQ----KGLLYLGMGVSGGEEGARHGP-SL-MPG 149 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~-~~~l~~----~gi~~v~~pvsgg~~~a~~G~-~i-~~g 149 (505)
|++||+ ..++++++++.+.+.++.++|.++++....+.++ .+.+.+ ..+..+..|-.- .+.+..-+ .+ +.+
T Consensus 82 ilavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a-~ev~~g~~t~~via~ 159 (341)
T PRK12439 82 VMGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA-REVAEGYAAAAVLAM 159 (341)
T ss_pred EEEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH-HHHHcCCCeEEEEEe
Confidence 999998 5799999999999988888999888876542222 222322 111122222110 11122223 23 334
Q ss_pred CCHHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 150 GSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 150 g~~e~~~~v~~ll~~iga~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
.+++..+.++.+|+.-+-++ ++- ++++.++ .|...-+++..|.....+...+.|+..+++..| .++
T Consensus 160 ~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~~ 237 (341)
T PRK12439 160 PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GNP 237 (341)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 46677788888886544211 000 2222222 233333455566666677789999999999998 787
Q ss_pred HHHHHHHHHhccCCcchhhHhhhhhhccccc----ccCCchhHHHHHhhhCCCccHHHHHH----HHHHcCCCcchhHHH
Q 010652 218 AELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILDKTGMKGTGKWTVQ----QAAELSVAAPTIAAS 289 (505)
Q Consensus 218 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~----~~~~~~~ld~i~~~~~~kgtg~~~~~----~A~~~gvp~p~i~~A 289 (505)
+.+... .|.++ |+-+......++. .+..+..++.+.+.++|+-+|..++. .++++++.+|++.+.
T Consensus 238 ~t~~gl-----~G~GD--l~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~ 310 (341)
T PRK12439 238 ETFAGL-----AGMGD--LIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREV 310 (341)
T ss_pred cccccc-----chhhh--hhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 766543 12222 1111111111111 12233567778888888888987774 778899999999863
Q ss_pred HHHHHHcccchHHHHHHHHhccC
Q 010652 290 LDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 290 ~~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
.+.+...++.+..+..++..+
T Consensus 311 --~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 311 --DAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred --HHHHhCCCCHHHHHHHHhcCC
Confidence 577787888888888887554
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.64 E-value=1.4e-14 Score=153.61 Aligned_cols=194 Identities=19% Similarity=0.199 Sum_probs=144.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+||| +|.||.++|..|.++|++|++|||++++..+..... ++..+.++++.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988765554432 24556677777776 99999999994 6
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChhhhhcCC-cccC-C--CCHHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMP-G--GSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~~a~~G~-~i~~-g--g~~e~~~~v~~ 160 (505)
+.++++++.+.+.++.+|+|++++.......+.+.+. .+..|+++ |+.|.......|. .+++ + .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 7889999999999999999999988777766665543 47889986 8887655555666 4443 3 36788999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+|+.+| ..++++++... -+++.+......+..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G------~~v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEG------ARVIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcC------CEEEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999 56778876533 3344343333444444555444 5556 88776543
No 60
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.64 E-value=3.9e-16 Score=165.92 Aligned_cols=118 Identities=17% Similarity=0.287 Sum_probs=101.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHhCCCcchhhHHHHHHHHHhcCCCCC-CC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE---LARIWKGGCIIRAVFLDRIKKAYQRNPNLA-SL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~---i~~iW~~GciIrs~lL~~i~~~~~~~~~~~-~l 400 (505)
.+++||+||+||+|+|+.|++++|+|.|+++.. + +|..+ +++.|+.| .++|+++++..++|+++++.. ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 479999999999999999999999999998433 3 55555 56669998 589999999999998765432 47
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
++|.+.+...+++++ ||+|++|+++|+|+|+|++||+ +.++++..|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 888899999999999 9999999999999999999999 67778877754
No 61
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.63 E-value=1.1e-14 Score=147.76 Aligned_cols=168 Identities=18% Similarity=0.242 Sum_probs=127.3
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|+.++.++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+.. ...+.++++.++. +|+||+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVii 72 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG-----DRVTTSAAEAVKG---ADLVIL 72 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC-----ceecCCHHHHhcC---CCEEEE
Confidence 676666899999999999999999999995 899999999988776654321 2345677777765 999999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChh-hhhcC-------C-c---
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHG-------P-S--- 145 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~-~a~~G-------~-~--- 145 (505)
|+|.. ....+++++.+.+.++.+|+|.++......+...+.+ ..+++|++. |+.|++. +...+ . .
T Consensus 73 avp~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 73 CVPVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred CCCHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99995 5788888898889999999999888765554444433 347789986 8887642 22222 2 2
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCch
Q 010652 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184 (505)
Q Consensus 146 i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g 184 (505)
.+.+++++.++.++++++.+| ..++++++....
T Consensus 151 ~~~~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD 183 (307)
T PRK07502 151 PPEGTDPAAVARLTAFWRALG------ARVEEMDPEHHD 183 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEcCHHHHh
Confidence 224678899999999999999 677788764433
No 62
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.63 E-value=6.7e-15 Score=151.58 Aligned_cols=290 Identities=10% Similarity=0.014 Sum_probs=188.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHREGQL-------PLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~g~~-------~i~~~~s~~e~ 66 (505)
.++|+|||.|.||.+||..|+++| ++|.+|.|+++ .++.+.+.+.+...+ ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999999998 89999999986 355555443221111 57778898888
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhh--ccCCCCEEEeCCCCChhhHH---HHHHHHHHc-C--CeEEcCCCCCChh
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSE--HMSPGDCIIDGGNEWYLNTE---RRIHEASQK-G--LLYLGMGVSGGEE 138 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~t~---~~~~~l~~~-g--i~~v~~pvsgg~~ 138 (505)
+++ +|+|+++||+ ..++++++++.+ .+.++.++|.++.+...++. .+.+.+.+. + +.++..| +-..+
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGP-s~A~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGA-NVAND 165 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECC-CHHHH
Confidence 887 9999999999 589999999998 78777789988777654432 233333332 2 2222222 22234
Q ss_pred hhhcCC--cccCCCCHHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHHH
Q 010652 139 GARHGP--SLMPGGSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 139 ~a~~G~--~i~~gg~~e~~~~v~~ll~~iga~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
-++.-| ..+.+-+.+..+.++.+|..=.-++ ++- |+++-++. |...-+++-.|.-...+...++|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 455555 3445568888888888885322111 000 33333332 44444567789999999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHhccCCcchhh----Hhhh--hhhcccccccCCchhHHHHHhhh--CCCccHHHHH--
Q 010652 205 AYDVLKHVGG-LSNAELAEIFDEWNKGELESFL----VEIT--ADIFKVKDEYGEGELVDKILDKT--GMKGTGKWTV-- 273 (505)
Q Consensus 205 a~~l~~~~g~-l~~~~i~~~~~~~~~g~~~s~l----~~~~--~~~l~~~~~~~~~~~ld~i~~~~--~~kgtg~~~~-- 273 (505)
+..++++.|+ .+++.+... .|.++-.+ .+++ ...+.+. .++..++.+.+.+ +|+-+|..++
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GDLi~Tc~sSRN~~~G~~l~~g---~~~~~~~~~~~~~~~~~~vEG~~t~~~ 316 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLADLITTCLGGRNVRCAAEFAKR---NGKKSWEEIEAELLNGQKLQGTVTLKE 316 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhHhhhcccCCCcHHHHHHHhcc---CCCCCHHHHHHHhhCCcEechHHHHHH
Confidence 9999999972 467766543 12222111 1111 0111110 0113566777766 7889998888
Q ss_pred --HHHHHcCC--CcchhHHHHHHHHHcccchHHHHHHHHhcc
Q 010652 274 --QQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 274 --~~A~~~gv--p~p~i~~A~~~r~~s~~~~~r~~~~~~~~~ 311 (505)
+.++++++ ++|++.+ + .|.+...++.......++..
T Consensus 317 v~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~r 356 (365)
T PTZ00345 317 VYEVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLSTN 356 (365)
T ss_pred HHHHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHcC
Confidence 57889999 8999985 3 56776666666666666543
No 63
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.61 E-value=4.2e-14 Score=143.16 Aligned_cols=255 Identities=18% Similarity=0.200 Sum_probs=163.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CC--CCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ--LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g~--~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 77777776543210 00 011123455554444 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCC----C
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 151 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg----~ 151 (505)
|+. +++++++.+.+.+.++.+||...|+.. ....+.+.+.+. |+.++++...++..-...++ .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 995 689999999998888888988888752 233444444332 34445554433211112233 344442 3
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHH---------------------HHHHHHHHHHHHHHH
Q 010652 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDVLK 210 (505)
Q Consensus 152 ~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~---------------------~~~~~~i~Ea~~l~~ 210 (505)
.+..+.+..+|...+ ..+....+.-...+.|++.|... .....++.|+..+++
T Consensus 155 ~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~ 228 (305)
T PRK12921 155 SERTRAVRDALAGAR------LEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVAR 228 (305)
T ss_pred CHHHHHHHHHHHhCC------CCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 455666777777666 34444445566678888777432 335567899999999
Q ss_pred HhCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 211 HVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| ++ .+.+.+.+...... ......++..++..++. ..+|.+... .++.|+++|+|+|....
T Consensus 229 a~G-~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~-----tEid~i~G~---------vv~~a~~~gv~~P~~~~ 292 (305)
T PRK12921 229 AEG-APLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRP-----LEIDHLQGV---------LLRRARAHGIPTPILDT 292 (305)
T ss_pred HcC-CCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCc-----ccHHHHHHH---------HHHHHHHhCCCCcHHHH
Confidence 988 76 33444433321111 11222334456655432 367777654 68899999999999886
Q ss_pred H
Q 010652 289 S 289 (505)
Q Consensus 289 A 289 (505)
.
T Consensus 293 l 293 (305)
T PRK12921 293 V 293 (305)
T ss_pred H
Confidence 4
No 64
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=2.7e-13 Score=134.27 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=151.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~---V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|+|||||+|.||.+|+++|.+.|+. |.+|||++++.+++.+... +...+.+..+++++ +|+||+++|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999865 5799999999888776431 24567889988887 9999999996
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~~v~~ll~ 163 (505)
..+.++++++ . +.++++||+...+. +...+.+.+......+..+|..... ...|.+.+.+++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 6788888776 2 56788999876553 4445555554433456677763222 233555555553 47899999
Q ss_pred HhhcccCCCCcEEEeCCCCchhhhhhHhHH-----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHh
Q 010652 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNG-----IEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 164 ~iga~~~~~~~v~~~G~~G~g~~vK~v~N~-----i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~ 238 (505)
.+| .++. ++++ |...+. .-...+.++.++..++.+.| +++++..+++.+ ++.
T Consensus 142 ~lG------~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~---------~~~ 198 (258)
T PRK06476 142 ALG------TAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQG-LKRQKARAYLAP---------LFA 198 (258)
T ss_pred hcC------CcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH---------HHH
Confidence 999 3333 4432 111111 22223346788888999998 999998888633 222
Q ss_pred hhhhh-cccccccCCchhHHHHHh-hhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 239 ITADI-FKVKDEYGEGELVDKILD-KTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 239 ~~~~~-l~~~~~~~~~~~ld~i~~-~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
-+... +.. .+. ..+.+.| ....-||..-.+..-.+.|+.-.++.
T Consensus 199 G~~~l~~~~-~~~----~~~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~ 244 (258)
T PRK06476 199 SLAQDAVRS-TKT----DFSALSREFSTKGGLNEQVLNDFSRQGGYAALTD 244 (258)
T ss_pred HHHHHHHhc-CCC----CHHHHHHhCCCCCchHHHHHHHHHHCChHHHHHH
Confidence 22333 222 111 2233333 34445666555566666777644443
No 65
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.61 E-value=1.2e-15 Score=162.17 Aligned_cols=120 Identities=12% Similarity=0.219 Sum_probs=99.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcch
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW-NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w-~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
.+++||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|++++....+|+++++....|+|
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l~ 247 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLVD 247 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccHH
Confidence 478999999999999999999999999998533 32 12445556668997 78999999999999985444468889
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
.+.+...+++++ ||+|++|+++|+|+|+|+++++ +.+.++..|..
T Consensus 248 ~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~ 294 (467)
T TIGR00873 248 KILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERVA 294 (467)
T ss_pred hhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHH
Confidence 899999999999 9999999999999999999999 45555655543
No 66
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=3.1e-13 Score=134.41 Aligned_cols=242 Identities=15% Similarity=0.145 Sum_probs=153.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+++.+.. ++....+.++++.. +|+||+|+|+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~~ 72 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVKP 72 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcCH
Confidence 578999999999999999999999 78999999999888776542 24556788887766 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCCC--CHHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYNNI 158 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~gg--~~e~~~~v 158 (505)
. .++++++.+.+.+ +++||..+++.+.. .+.+.+. .+.+++. +| ..+.....|. .++++. +++.++.+
T Consensus 73 ~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v 144 (267)
T PRK11880 73 Q-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELV 144 (267)
T ss_pred H-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHH
Confidence 4 7999999998877 57888888876533 3333332 3445554 34 2233334444 455554 88999999
Q ss_pred HHHHHHhhcccCCCCcEEEeCCCCchhhhh-hHhHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHhccCCcchhh
Q 010652 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDEWNKGELESFL 236 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~i~Ea~~l-~~~~g~l~~~~i~~~~~~~~~g~~~s~l 236 (505)
+.+|+.+| . ++++.++..=+.+- +..++- +....+.|++.- +.+.| +++++..+++.++-.|.
T Consensus 145 ~~l~~~lG------~-~~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g~----- 209 (267)
T PRK11880 145 ENLLSAFG------K-VVWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLG-LPREQARKLAAQTVLGA----- 209 (267)
T ss_pred HHHHHhCC------e-EEEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH-----
Confidence 99999999 4 55665322112211 111211 122223344433 45567 99999888764432222
Q ss_pred HhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhH
Q 010652 237 VEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
...+...+ .. .-+.+.+....-||-.-.+....+.|++-.++.
T Consensus 210 ----~~~~~~~~-~~---~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 210 ----AKLLLESG-EH---PAELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred ----HHHHHhcC-CC---HHHHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 23332211 11 122333334445566566667777888865554
No 67
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.59 E-value=2.4e-14 Score=146.48 Aligned_cols=282 Identities=13% Similarity=0.055 Sum_probs=176.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChhHHHHHHHhhcccCC-----C--CeeeeCCHHHHH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKG--------FPISVYNR-----TTSKVDETLDRAHREGQ-----L--PLTGHYTPRDFV 67 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G--------~~V~v~dr-----~~~~~~~~~~~~~~~g~-----~--~i~~~~s~~e~v 67 (505)
||+|||.|.||.+||..|+++| ++|.+|.| +++-.+.+.....+... + ++++++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 54544444433221100 0 466778999988
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh--HHH-HHHHHHHc-C--CeEEcCCCCCChhhhh
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQK-G--LLYLGMGVSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--t~~-~~~~l~~~-g--i~~v~~pvsgg~~~a~ 141 (505)
+. +|+||++||+ ..++++++++.+.+.++.++|.++.+.... +.. +.+.+.+. + +.++..|-. ..+-++
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~-A~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANL-ANEVAK 155 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcch-HHHHHc
Confidence 87 9999999999 589999999999998889999998877654 433 33333321 2 222222221 234445
Q ss_pred cCC-cc-cCCCC----HHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCCchhhhhhHhHHHHHHHHHHHH
Q 010652 142 HGP-SL-MPGGS----FEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 142 ~G~-~i-~~gg~----~e~~~~v~~ll~~iga~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
.-| .+ +.+.+ .+..+.++.+|..=.-++ ++- |+++-++. |...-+.+-.|+-...+...+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 555 33 34456 788888888885221110 000 33333322 4444455678998899999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhhHhhhhhhcccccccCC-chhHHHHHhh--hCCCccHHHHHH----
Q 010652 204 EAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGE-GELVDKILDK--TGMKGTGKWTVQ---- 274 (505)
Q Consensus 204 Ea~~l~~~~g~l~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~-~~~ld~i~~~--~~~kgtg~~~~~---- 274 (505)
|+..+++..| -+++ .+... .|.++-.+.-..++..+-...+.. +..++.+.+. .+|+.+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999998 5554 44322 122221110000000000001122 3567777777 788899988885
Q ss_pred HHHHcCCC--cchhHHHHHHHHHcccchHHH
Q 010652 275 QAAELSVA--APTIAASLDCRYLSGLKEERE 303 (505)
Q Consensus 275 ~A~~~gvp--~p~i~~A~~~r~~s~~~~~r~ 303 (505)
.+++.++. +|++.+. .+.+...++.+.
T Consensus 309 l~~~~~i~~~~Pi~~~v--y~il~~~~~~~~ 337 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEAV--YQILYEGLPPKK 337 (342)
T ss_pred HHHHcCCCcCCCHHHHH--HHHHhCCCCHHH
Confidence 57889999 9999863 355544444433
No 68
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.59 E-value=1.2e-13 Score=136.81 Aligned_cols=190 Identities=10% Similarity=0.098 Sum_probs=133.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHH-----HHHHhhcccCCCCeeeeC
Q 010652 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVD-----ETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgiIGlG~m--------------------G~~lA~~La~~G~~V~v~dr~~~~~~-----~~~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||++|+++||+|++|||++++++ .+.+.| ...++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 57888888864 88999999999999999999987653 344433 46788
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHH---HHHcCCeEEc---CCCCC
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE---ASQKGLLYLG---MGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~---l~~~gi~~v~---~pvsg 135 (505)
++.++++. +|+||+|+|++.+++++++++.+.+.+|++|||+||+.|.......+. +..+.+.... +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999998887665 3334343333 23333
Q ss_pred ChhhhhcCCcccCC--------CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHH
Q 010652 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~i~~g--------g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
.+. ++-.++.| .++|..+++-++.+..+ +..+.+...-.+...-|. ....+...+.+.+=+.
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~------~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~ 220 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTG------KKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYY 220 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHH
Confidence 221 11122222 37888999999999998 566665443333333343 2233334455556666
Q ss_pred HHHHhCCCC
Q 010652 208 VLKHVGGLS 216 (505)
Q Consensus 208 l~~~~g~l~ 216 (505)
...+..|.+
T Consensus 221 ~~t~i~~ap 229 (341)
T TIGR01724 221 VGTQIINAP 229 (341)
T ss_pred HHHHHhcCc
Confidence 665554344
No 69
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.59 E-value=2.4e-15 Score=159.33 Aligned_cols=118 Identities=12% Similarity=0.229 Sum_probs=99.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHHhCCCcchhhHHHHHHHHHhcCCC-CCCC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG---ELARIWKGGCIIRAVFLDRIKKAYQRNPN-LASL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~---~i~~iW~~GciIrs~lL~~i~~~~~~~~~-~~~l 400 (505)
.+++||+||+||+|+|++|+.++|+|.|+++.. + +|.. +|++.|+.| .++|+++++...++.+++. ....
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 479999999999999999999999999999432 3 5554 456668999 5899999999999987442 3458
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (505)
++|.+.+...+++++ ||++++|+++|+|+|+|++|++ +.+.++..|..
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 889999999999999 9999999999999999999999 45556666644
No 70
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.58 E-value=1.8e-13 Score=140.13 Aligned_cols=275 Identities=12% Similarity=0.098 Sum_probs=156.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-C--CCeeeeCCHHHHH-hhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-Q--LPLTGHYTPRDFV-LSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g-~--~~i~~~~s~~e~v-~~l~~advIil 78 (505)
|||+|||+|.||..+|..|+++|++|++|+|+++.++.+.+.+.+. + . .++....++++.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4799999999999999999999999999999998888776542110 0 0 0344566777765 34 899999
Q ss_pred ecCCCchHHHHHHHHhh-ccCCCCEEEeCCCCChhh-----HHHHHHHHHHcCCeEEcCCCCCChhhhhcCC-cc-cCCC
Q 010652 79 LVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLN-----TERRIHEASQKGLLYLGMGVSGGEEGARHGP-SL-MPGG 150 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-~i-~~gg 150 (505)
+||+ ..++++++++.+ .+.++..|+..+++.... .+.+.+.+....+..+..|- ...+.+...+ .+ +.|.
T Consensus 78 avks-~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~-~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPT-QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS-FAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCH-HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc-HHHHHHcCCCcEEEEecC
Confidence 9999 479999999998 888777777777776432 22222322222222222221 1113334344 33 3444
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH-----------------HHHHHHHHHHHHHHHHHHHhC
Q 010652 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN-----------------GIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 151 ~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N-----------------~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.+..+.+..+|+.-+ ..+....+.-.-.+.|++-| .......+++.|+..++++.|
T Consensus 156 ~~~~~~~l~~~l~~~~------~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G 229 (326)
T PRK14620 156 NETLGSSLISKLSNEN------LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKN 229 (326)
T ss_pred CHHHHHHHHHHHCCCC------eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 5555555555554333 22222222333334444433 334446778899999999987
Q ss_pred CC--CHHHHH------HHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccH----HHHHHHHHHcCC
Q 010652 214 GL--SNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTG----KWTVQQAAELSV 281 (505)
Q Consensus 214 ~l--~~~~i~------~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg----~~~~~~A~~~gv 281 (505)
. +++++. +.+..-......++-+.. .+ ..+..++.+.+...+.-+| ....+.++++|+
T Consensus 230 -~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~---~l------~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 230 -GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGF---KI------GNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred -CCCCcchhhccchhhhhhheecCCCCCcHHHHH---HH------HCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 5 677773 332111100111111110 00 0112333333322221222 256789999999
Q ss_pred CcchhHHHHHHHHHcccchHHHH
Q 010652 282 AAPTIAASLDCRYLSGLKEEREK 304 (505)
Q Consensus 282 p~p~i~~A~~~r~~s~~~~~r~~ 304 (505)
++|+... +. +.+...++....
T Consensus 300 ~~P~~~~-l~-~~~~~~~~~~~~ 320 (326)
T PRK14620 300 ELPICES-IY-NLLYENISLEKT 320 (326)
T ss_pred CCCHHHH-HH-HHHhCCCCHHHH
Confidence 9999885 33 444433333333
No 71
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.57 E-value=1.1e-13 Score=139.78 Aligned_cols=254 Identities=16% Similarity=0.194 Sum_probs=150.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc--cCCC--CeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR--EGQL--PLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~--~g~~--~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..+|..|+++|++|++++|++++.+.+.+.+.. .+.. .+....+++++ . .+|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 579999999999999999999999999999998888777654421 1100 01223445443 3 49999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcC----CeEEcCCCCCChhhhhcCC-cccCCC---CHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG----LLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 154 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~g----i~~v~~pvsgg~~~a~~G~-~i~~gg---~~e~ 154 (505)
. +++++++.+.+.+.++.+||...|+.. ..+.+.+.+.... +.+.++-..+.......+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 5 689999999999988888998888753 2233344343221 1222221221111111222 233332 2233
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH---------------------HHHHHHHHHHHHHHHHHHHhC
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~~~g 213 (505)
.+.+.++|+..+- .+....+.-...+.|++.| ........++.|+..++++.|
T Consensus 155 ~~~l~~~l~~~~~------~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G 228 (304)
T PRK06522 155 AEALADLLNAAGL------DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEG 228 (304)
T ss_pred HHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcC
Confidence 5666677776552 2222222333334444333 233445677899999999987
Q ss_pred CCCH--HHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 214 GLSN--AELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 214 ~l~~--~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++. +.+.+.+......... ...++..++...+. -.+|.+.. +.++.|+++|+|+|....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 229 -VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred -CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 653 4444433322211111 12334445554322 35566553 578999999999998775
No 72
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.56 E-value=1.6e-12 Score=129.48 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=129.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.++|||||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.. ++..+.+..++++. +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4689999999999999999999885 6999999999988776521 24567788888876 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
+ ..+.++++++.+.+.++.+||+.-.+.+ ...+.+.+... .+.+ -+|-. +.....|. .+.++ .+++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888889999877753 34445555321 2222 24532 23344565 34443 25667788
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCC---------CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEG---------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~---------G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
++.+|+.+| . ++.+.+. |+|- ++.+..+..+.++ +.+.| ++.++..++..
T Consensus 147 v~~lf~~~G------~-~~~~~E~~~d~~talsgsgP-------Af~~~~~eal~~a---~v~~G-l~~~~A~~l~~ 205 (272)
T PRK12491 147 VLNIFNIFG------Q-TEVVNEKLMDVVTSISGSSP-------AYVYMFIEAMADA---AVLGG-MPRKQAYKFAA 205 (272)
T ss_pred HHHHHHcCC------C-EEEEcHHHhhhHHHhccCcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999 3 3455331 3321 2223334444444 44566 99998887763
No 73
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.56 E-value=1e-13 Score=140.75 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhH-------HHHHHH-------hhcccCC----------CCeeeeCC--HHHHHhhc
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSK-------VDETLD-------RAHREGQ----------LPLTGHYT--PRDFVLSI 70 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~-------~~~~~~-------~~~~~g~----------~~i~~~~s--~~e~v~~l 70 (505)
||..||..++.+|++|.+||++++. +++..+ .....|. .+++.+.+ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111110 0000010 04565544 6676666
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH----HcCCeEEcCC-------CCCChh
Q 010652 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMG-------VSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~----~~gi~~v~~p-------vsgg~~ 138 (505)
+|+||.|||+..+++..+ .++.+.++++.|+ +||+++....++.+.+. ..|.||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999998777 6788888888888 55555566667777663 2488999988 55554
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010652 139 GARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 139 ~a~~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++++++.++++.+| +.++++|+.+ |++ -|. ..+..++|++.++++.+ ++++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gfi----~nr---i~~~~l~EAl~l~e~g~-~~~e 209 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIG------KVPVVCGPSP-GYI----VPR---IQALAMNEAARMVEEGV-ASAE 209 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Ccc----hHH---HHHHHHHHHHHHHHhCC-CCHH
Confidence 579999999999999999 8899998754 543 233 35677799999999988 9999
Q ss_pred HHHHHHH
Q 010652 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~~~~ 225 (505)
++++++.
T Consensus 210 ~iD~a~~ 216 (314)
T PRK08269 210 DIDKAIR 216 (314)
T ss_pred HHHHHHH
Confidence 9999873
No 74
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.54 E-value=6.8e-14 Score=131.40 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=99.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.. ...| ++.++++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 6899999999999999999999999999999999987765321 1111 68889999998887
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHH-HHcC-----CeEEcCCCC--
Q 010652 72 RPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA-SQKG-----LLYLGMGVS-- 134 (505)
Q Consensus 72 ~advIil~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l-~~~g-----i~~v~~pvs-- 134 (505)
+|++|+|||++ ..++++++.+.+.+.++++||..||..|.+|+++...+ ++.+ +++.-+|-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999875 24788889999999999999999999999999766544 4332 344555522
Q ss_pred CC-h-hhhhcCCcccCCCCHHHHH-HHHH
Q 010652 135 GG-E-EGARHGPSLMPGGSFEAYN-NIRD 160 (505)
Q Consensus 135 gg-~-~~a~~G~~i~~gg~~e~~~-~v~~ 160 (505)
-| . ...++-+.++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 11 1 1222223566666554333 5544
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.52 E-value=4.7e-13 Score=138.72 Aligned_cols=171 Identities=14% Similarity=0.172 Sum_probs=124.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... .-...++++++++. +|+||+|+|.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3799999999999999999999999999999887654433322110 01234566777766 99999999995 78
Q ss_pred HHHHHHHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChh-hh-------hcCC-ccc-C--CCCH
Q 010652 87 DQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP-SLM-P--GGSF 152 (505)
Q Consensus 87 ~~vl~~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~-~a-------~~G~-~i~-~--gg~~ 152 (505)
.++++++.+ .+.++.+|.|.+++.........+. ...+..|++ .|+.|++. |. ..|. .++ + ++++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999887666555443 345678998 68888642 22 2333 333 3 2578
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHh
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH 191 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~ 191 (505)
+.++.++++++.+| ..++++.+......+-++.
T Consensus 153 ~~~~~v~~l~~~lG------a~~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 153 DAVAELKDLLSGTG------AKFVVLDAEEHDRAVALVS 185 (359)
T ss_pred HHHHHHHHHHHHcC------CEEEECCHHHHhHHHhHhc
Confidence 99999999999999 6777887755555554443
No 76
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.50 E-value=6.2e-13 Score=132.92 Aligned_cols=192 Identities=16% Similarity=0.230 Sum_probs=132.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||.|.||..+|..++..||+|.++|++++.+++..... ...|.. +++...++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 57899999999999999999998899999999987654433211 011100 3444555553
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~p-vsgg~~~a~~ 142 (505)
++.||+||.+|+....++.-+ .++-+.++++.|+-..+++.+.+ ++++.+. ++ |.||++.| ++--.
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 334999999999998887655 67777777777666554444433 3444332 22 67777653 22111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++++..+.+.++ +.+ .+...-.|+++..+ ....+.|++.++.+.. .+++++
T Consensus 152 --EvI~g~~T~~e~~~~~~~~~~~ig------K~~-vv~~D~pGFi~NRi-------l~~~~~eA~~l~~eGv-a~~e~I 214 (307)
T COG1250 152 --EVIRGEKTSDETVERVVEFAKKIG------KTP-VVVKDVPGFIVNRL-------LAALLNEAIRLLEEGV-ATPEEI 214 (307)
T ss_pred --EEecCCCCCHHHHHHHHHHHHHcC------CCC-EeecCCCceehHhH-------HHHHHHHHHHHHHhCC-CCHHHH
Confidence 13344 37899999999999999 555 44445667666444 4566699999999987 999999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.+++
T Consensus 215 D~~~~ 219 (307)
T COG1250 215 DAAMR 219 (307)
T ss_pred HHHHH
Confidence 99874
No 77
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.50 E-value=1.9e-12 Score=131.84 Aligned_cols=254 Identities=13% Similarity=0.123 Sum_probs=154.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEE
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIi 77 (505)
.+|+|+|||+|.||..+|..|+++|++|+++.|++. +.....+.. .++. ......++++ . ..+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M---PPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c---CCCCEEE
Confidence 457999999999999999999999999999999863 334433311 0100 0112223332 2 3489999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccC---C
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMP---G 149 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~---g 149 (505)
+|||.. ++.++++.+.+.+.++.+|+...|+.. ..+.+.+.+.+. |+.++++...+...-...|. .+.. .
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999996 578888999999988888999888763 333444444332 33344433322111111222 2222 2
Q ss_pred C-C-----HHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH---------------------HHHHHHHHHH
Q 010652 150 G-S-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLI 202 (505)
Q Consensus 150 g-~-----~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~i 202 (505)
| + .+..+.+..+|+..+. .+....+.-..-+.|++.| ........++
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~------~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~ 229 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGI------DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALM 229 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCC------CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHH
Confidence 2 3 4566677788887773 3333334444445555444 1334456778
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcC
Q 010652 203 SEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELS 280 (505)
Q Consensus 203 ~Ea~~l~~~~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~g 280 (505)
.|++.++++.| ++ .+.+..+++...... ....++..++.+.+. ..+|.+.. +.++.|+++|
T Consensus 230 ~E~~~va~a~G-i~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~G 292 (313)
T PRK06249 230 AEVIQGAAACG-HTLPEGYADHMLAVTERMP--DYRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARAAG 292 (313)
T ss_pred HHHHHHHHhcC-CCCChhHHHHHHHHhhcCC--CCCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHHhC
Confidence 99999999988 76 223333332222211 122444556655432 47888775 5799999999
Q ss_pred CCcchhHHH
Q 010652 281 VAAPTIAAS 289 (505)
Q Consensus 281 vp~p~i~~A 289 (505)
+|+|.....
T Consensus 293 i~~P~~~~l 301 (313)
T PRK06249 293 CAMPRVEML 301 (313)
T ss_pred CCCcHHHHH
Confidence 999998753
No 78
>PLN02256 arogenate dehydrogenase
Probab=99.43 E-value=1.2e-11 Score=125.01 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=116.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||..+|..|.+.|++|++||+++.. +..... ++..+.+.++++.. .+|+||+|+|.. .
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~~--~aDvVilavp~~-~ 104 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCEE--HPDVVLLCTSIL-S 104 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhhC--CCCEEEEecCHH-H
Confidence 468999999999999999999999999999999642 222222 24556788887631 289999999985 7
Q ss_pred HHHHHHHH-hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh--hhcCCcc-c-------CCCCHH
Q 010652 86 VDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGPSL-M-------PGGSFE 153 (505)
Q Consensus 86 v~~vl~~l-~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~--a~~G~~i-~-------~gg~~e 153 (505)
+.++++++ .+.+.++.+|+|.+++.......+.+.+. .+..|++ +|+.|.+.+ ...+..+ . .+.+++
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHH
Confidence 88999888 67788999999999976555555555443 3567887 488877643 2233322 2 133678
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
.++.++.+++.+| ..++.+.+.
T Consensus 184 ~~~~l~~l~~~lG------a~v~~~~~e 205 (304)
T PLN02256 184 RCERFLDIFEEEG------CRMVEMSCE 205 (304)
T ss_pred HHHHHHHHHHHCC------CEEEEeCHH
Confidence 8999999999999 567777654
No 79
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.43 E-value=4.4e-12 Score=126.16 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=116.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCH-HHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTP-RDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~~s~-~e~v~~l~~advIil~vp 81 (505)
++++|+|+|+|.||.++|+.|.++|+.|.+++++.. ..+...+.+... ....+. .+.+. .+|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d-----~~~~~~~~~~~~---~aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVID-----ELTVAGLAEAAA---EADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccc-----ccccchhhhhcc---cCCEEEEecc
Confidence 357899999999999999999999999877765554 333333222110 111222 33333 4899999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCCh--hhhhcCC--cccCCC--CHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--EGARHGP--SLMPGG--SFEA 154 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~--~~a~~G~--~i~~gg--~~e~ 154 (505)
-. ++.++++++.|.+++|.+|+|.+++.....+...+...+.. +|++. |+.|++ .....+. .++++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 95 78999999999999999999999998877777776665545 89885 888873 3333444 344543 5678
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
++++..+|+++|+ .++++.+.
T Consensus 152 ~~~~~~~~~~~ga------~~v~~~~e 172 (279)
T COG0287 152 VEEVKRLWEALGA------RLVEMDAE 172 (279)
T ss_pred HHHHHHHHHHcCC------EEEEcChH
Confidence 9999999999994 56777654
No 80
>PLN02712 arogenate dehydrogenase
Probab=99.40 E-value=5e-12 Score=140.11 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=114.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||. .
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~-~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSI-L 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCCh-H
Confidence 4578999999999999999999999999999999653 333322 24556788887652 28999999997 5
Q ss_pred hHHHHHHHHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC---c-----ccCCCCHHH
Q 010652 85 PVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP---S-----LMPGGSFEA 154 (505)
Q Consensus 85 ~v~~vl~~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~---~-----i~~gg~~e~ 154 (505)
.+.++++++.+ .+++|.+|+|++++.. ...+..+.+...+..|+ .+|+.|.+.+ ..|. . .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK~-~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVKE-FPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCccH-HHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 78899988876 6788999999999873 33344444444577888 5799988754 2331 1 334555544
Q ss_pred H---HHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 155 Y---NNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 155 ~---~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
. +.+..+++.+| ..++.+.+.
T Consensus 515 ~~~~~~l~~l~~~lG------a~vv~ms~e 538 (667)
T PLN02712 515 VSRCDSFLDIFAREG------CRMVEMSCA 538 (667)
T ss_pred HHHHHHHHHHHHHcC------CEEEEeCHH
Confidence 4 44558888888 567777653
No 81
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=1e-11 Score=139.35 Aligned_cols=191 Identities=14% Similarity=0.225 Sum_probs=135.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|++||++++.+++..+. ....|. .+++++++++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876543211 011110 057777777553 4
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~~ 142 (505)
+ +|+||.+||....++.-+ .++.+.++++.|+...|++.+.+ ++++.+... |.||+..| ...-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 4 999999999998887554 78888888888776666655433 344444322 55555432 11111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.+. ...|..+ |.+.. ..++|++.+.++ | .++++|
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lg------k~pv~v~-d~pGfv~----nRi~~---~~~~ea~~lv~~-G-a~~e~I 523 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMG------KTPIVVN-DCPGFFV----NRVLF---PYFAGFSQLLRD-G-ADFRQI 523 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhC------CceEEec-CcCchhH----HHHHH---HHHHHHHHHHHc-C-CCHHHH
Confidence 24444 48899999999999999 7888885 4666654 55543 456899999875 5 899999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 524 D~a~~ 528 (715)
T PRK11730 524 DKVME 528 (715)
T ss_pred HHHHH
Confidence 99874
No 82
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.39 E-value=7.6e-12 Score=140.41 Aligned_cols=193 Identities=15% Similarity=0.205 Sum_probs=136.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+. ....|. .+++++.+++++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876553321 111110 057777787654 4
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~~ 142 (505)
+ ||+||.+||....++.-+ .++.+.++++.|+...|++.+.+ +++..+... |.||+..+ ++.-.
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~Lv----- 483 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLL----- 483 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceE-----
Confidence 3 999999999998887554 78888888888887655554433 444444322 55666532 11111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.+++ ..|.++ |.+. ...++|++.++++ | +++++|
T Consensus 484 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGFi~----NRi~---~~~~~ea~~lv~e-G-v~~~~I 545 (737)
T TIGR02441 484 --EIITHDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPGFYT----TRCL---GPMLAEVIRLLQE-G-VDPKKL 545 (737)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCCchH----HHHH---HHHHHHHHHHHHc-C-CCHHHH
Confidence 23443 58899999999999999 78888854 566655 5544 4566999999876 5 899999
Q ss_pred HHHHHHh
Q 010652 221 AEIFDEW 227 (505)
Q Consensus 221 ~~~~~~~ 227 (505)
+.++..+
T Consensus 546 D~a~~~~ 552 (737)
T TIGR02441 546 DKLTTKF 552 (737)
T ss_pred HHHHHHc
Confidence 9986543
No 83
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.38 E-value=4.6e-12 Score=122.37 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=110.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCCCee-eeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g~~~i~-~~~s~~e~v~~l~~advIil~v 80 (505)
|||+||| +|.||..|+..|+++|++|.+++|++++.+.+...... .| .... ...+..+.++. +|+||+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~ea~~~---aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGG-SDIKVTGADNAEAAKR---ADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccC-CCceEEEeChHHHHhc---CCEEEEEC
Confidence 5899997 89999999999999999999999999988776653210 00 0011 22356666666 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhh---------------HHHHHHHHHHcCCeEEcC-C-----CCCChhh
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---------------TERRIHEASQKGLLYLGM-G-----VSGGEEG 139 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------t~~~~~~l~~~gi~~v~~-p-----vsgg~~~ 139 (505)
|.. .+.++++++.+.+. +++|||++|....+ ++.+++.+.. +.+++.+ + +..+ ..
T Consensus 77 p~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~ 152 (219)
T TIGR01915 77 PWD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VD 152 (219)
T ss_pred CHH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CC
Confidence 984 68888888877665 58999999886541 1334444332 1333332 2 2222 11
Q ss_pred hhcCC-cccCCCCHHHHHHHHHHHHHh-hcccCCCCcEEEeCCC
Q 010652 140 ARHGP-SLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEG 181 (505)
Q Consensus 140 a~~G~-~i~~gg~~e~~~~v~~ll~~i-ga~~~~~~~v~~~G~~ 181 (505)
...+. .+++|-++++.+.+..+.+.+ | -.++.+|+.
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G------~~~vd~G~l 190 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDG------LRALDAGPL 190 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCC------CCcccCCch
Confidence 11233 556666788889999999999 8 567788874
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.38 E-value=1.1e-11 Score=138.75 Aligned_cols=191 Identities=16% Similarity=0.242 Sum_probs=136.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC----------CCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+.. ...|. .+++.+.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765433211 11110 056777777553 4
Q ss_pred hcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--c--CCeEEcCC-CCCChhhhhc
Q 010652 69 SIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~--gi~~v~~p-vsgg~~~a~~ 142 (505)
+ +|+||.+||....++.- +.++.+.++++.|+...|++.+.+ +++..+.. + |.||+..| ++.-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv----- 461 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE-----
Confidence 4 99999999999888754 488888888888887666655443 44444432 2 56666532 22111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.++ ...|+++ |.+.. ..+.|++.++++ | .++++|
T Consensus 462 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~-d~pGfi~----NRl~~---~~~~ea~~l~~e-G-~~~~~I 523 (714)
T TIGR02437 462 --EVIRGEKSSDETIATVVAYASKMG------KTPIVVN-DCPGFFV----NRVLF---PYFGGFSKLLRD-G-ADFVRI 523 (714)
T ss_pred --eecCCCCCCHHHHHHHHHHHHHcC------CEEEEeC-CcccchH----HHHHH---HHHHHHHHHHHC-C-CCHHHH
Confidence 24444 47899999999999999 8888886 4666655 55544 455999999875 5 899999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99874
No 85
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.37 E-value=1.7e-11 Score=137.15 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=133.8
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhh-------cccCC----------CCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..+|..++ .+|++|++||++++.+++..... ...|. .+++.+++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF- 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh-
Confidence 357999999999999999998 58999999999998655432210 00000 157777777543
Q ss_pred hhcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCC-CCCChhhhh
Q 010652 68 LSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~p-vsgg~~~a~ 141 (505)
++ ||+||.+||....++.- +.++.+.++++.|+...|++.+.+ ++++.+... |.||+..| .+.-.
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE----
Confidence 44 99999999999888754 478888888887776655554433 444444322 55665533 11111
Q ss_pred cCCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 142 HGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 142 ~G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
-++.| .++++++.+..+++.++ +.++.+. ...|..+ |.+. ...++|++.++++ | +++++
T Consensus 454 ---Evv~g~~T~~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl~---~~~~~Ea~~l~~~-G-~~~~d 514 (699)
T TIGR02440 454 ---EVIPHAGTSEQTIATTVALAKKQG------KTPIVVA-DKAGFYV----NRIL---APYMNEAARLLLE-G-EPVEH 514 (699)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEEc-cccchHH----HHHH---HHHHHHHHHHHHC-C-CCHHH
Confidence 24443 58899999999999999 7888885 4566655 4443 4566999999885 5 79999
Q ss_pred HHHHHH
Q 010652 220 LAEIFD 225 (505)
Q Consensus 220 i~~~~~ 225 (505)
|+.++.
T Consensus 515 ID~a~~ 520 (699)
T TIGR02440 515 IDKALV 520 (699)
T ss_pred HHHHHH
Confidence 999874
No 86
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.37 E-value=7e-11 Score=115.89 Aligned_cols=193 Identities=15% Similarity=0.081 Sum_probs=125.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~---~-V~v~dr-~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+||+|||+|.||.+++..|+++|+ + |.+++| ++++.+++.+.. ++..+.+.++++++ +|+|++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiav 74 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAM 74 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEec
Confidence 4689999999999999999998873 3 778887 467777766532 24566788888876 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cc--cCCCCHHHHH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SL--MPGGSFEAYN 156 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i--~~gg~~e~~~ 156 (505)
|+. ..+++++++.+.++ +++||+++.+..... +.+.+.. +..++ -+|-.. .....|. .+ -..++++..+
T Consensus 75 p~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~~-~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~ 147 (245)
T PRK07634 75 PPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLPK-GTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKE 147 (245)
T ss_pred CHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcCC-CCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHH
Confidence 985 78999999988775 679999888765443 3443332 22222 345222 2333443 22 2346889999
Q ss_pred HHHHHHHHhhcccCCCCcEEEeCCCC--chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 157 NIRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~~G~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
.++.+|+.+| .++ ++.+.- ..+.+--..-++.+..+..+.++ +.+.| ++.++..+++.
T Consensus 148 ~v~~lf~~~G------~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~ 207 (245)
T PRK07634 148 TLQLILKGIG------TSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVI 207 (245)
T ss_pred HHHHHHHhCC------CEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 9999999999 333 454321 11111111112333333333443 56777 99999888764
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.37 E-value=3.5e-12 Score=106.61 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=76.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAGLAVMGQNLALNVAEKG---FPISVY-NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G---~~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||||||.|.||.+|+..|.++| ++|.++ +|++++.+++.++. ++.... +..|+++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY------GVQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC------TTEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh------ccccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999954 99999999987764 234455 89999998 9999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
..+.++++++ +...++++|||..+
T Consensus 72 -~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 -QQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp -GGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred -HHHHHHHHHH-hhccCCCEEEEeCC
Confidence 5789999999 77789999999865
No 88
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.37 E-value=2.4e-10 Score=112.34 Aligned_cols=192 Identities=19% Similarity=0.185 Sum_probs=131.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++|||||.|+||.+|+..|.++| .+|.+.||++++.+.+.+.- ++..+++.+++++. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~------g~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY------GVVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc------CCcccCcHHHHHhh---CCEEEEEeC
Confidence 368999999999999999999999 68999999999988666543 23336777888887 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
+ ..+.+++.++.+ ..++++||..-.+.+ ...+...+. +..++- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 8 589999999998 788999998877653 344555554 344443 4532 23334555 44443 37778889
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHH
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIF 224 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~~~ 224 (505)
+..+|+.+| .++++.+.---.+.-+ .+---+.+..+.|++.-+- +.| ++.++..++.
T Consensus 144 v~~l~~~~G-------~v~~v~E~~~da~Tai--sGSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~ 201 (266)
T COG0345 144 VEALLSAVG-------KVVEVEESLMDAVTAL--SGSGPAYVFLFIEALADAGVRLG-LPREEARELA 201 (266)
T ss_pred HHHHHHhcC-------CeEEechHHhhHHHHH--hcCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 999999999 4566653210000000 1111123344455554444 566 9999887775
No 89
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.36 E-value=3.6e-12 Score=119.34 Aligned_cols=152 Identities=19% Similarity=0.364 Sum_probs=100.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhhc
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLSI 70 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~-------~~g~~----------~i~~~~s~~e~v~~l 70 (505)
||+|||+|.||..+|..++.+|++|.+||++++.+++..+... ..|.. ++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 6999999999999999999999999999999987654432110 01110 578889999888 5
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--Hc--CCeEEcCCCCCChhhhhcCC-
Q 010652 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~--gi~~v~~pvsgg~~~a~~G~- 144 (505)
+|+||.++|....++.-+ .+|.+.++++.++...|++.+.+ ++...+. ++ |.||+..|- .-+
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~--------~~~l 146 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPH--------LMPL 146 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTT--------T--E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccc--------cCce
Confidence 999999999988877544 78888888888887776665433 3443332 22 566665331 111
Q ss_pred -cccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeC
Q 010652 145 -SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 145 -~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G 179 (505)
-+++| .++++++.+..+++.++ +.++.+.
T Consensus 147 VEvv~~~~T~~~~~~~~~~~~~~~g------k~pv~v~ 178 (180)
T PF02737_consen 147 VEVVPGPKTSPETVDRVRALLRSLG------KTPVVVK 178 (180)
T ss_dssp EEEEE-TTS-HHHHHHHHHHHHHTT-------EEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCC------CEEEEec
Confidence 24443 58899999999999999 7777663
No 90
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.36 E-value=3e-10 Score=113.66 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=104.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G----~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... ......+..++++. +|+||+|+|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilavp 73 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICVP 73 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEecC
Confidence 58999999999999999999998 7899999875 44444443221 13456788888776 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
+ ..+.++++++.+.+.++.+||...++.... ++.+.+.. ..++ -+|-. +.....|. .+..+ -+++..+.
T Consensus 74 p-~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~ 146 (277)
T PRK06928 74 P-LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSR 146 (277)
T ss_pred H-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHH
Confidence 7 578999999999888888999888876443 45554432 1232 23432 23345566 34443 25677889
Q ss_pred HHHHHHHhhc
Q 010652 158 IRDILQKVAA 167 (505)
Q Consensus 158 v~~ll~~iga 167 (505)
++.+|+.+|.
T Consensus 147 v~~l~~~~G~ 156 (277)
T PRK06928 147 LEETLSHFSH 156 (277)
T ss_pred HHHHHHhCCC
Confidence 9999999993
No 91
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.35 E-value=2.7e-11 Score=122.93 Aligned_cols=256 Identities=14% Similarity=0.116 Sum_probs=148.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-cc---cCCC-Ceee-eCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HR---EGQL-PLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-~~---~g~~-~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
.|||+|+|+|.||.-+|..|++.|++|++++|+.++++.+.+.+ .. .|.. .... ..+.+ .+...|+||++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~----~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETAD----AAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcc----cccccCEEEEE
Confidence 46899999999999999999999999999999988888776542 11 0100 0000 11111 12347999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCC-CHH
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG-SFE 153 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg-~~e 153 (505)
++.. +++++++.+.+.+.++..|+-.-|+... .+.+.+.+... |+.++++..-+.-.-...|. .+..|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9996 6888999999999999999999888743 23344444322 22233221111000011122 122331 223
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHH------------------HHHHHHHHHHHHHHHHHhCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI------------------EYGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i------------------~~~~~~~i~Ea~~l~~~~g~l 215 (505)
..+++.++|...+.+ +.+..+.-...+-|++-|.. .....+++.|++.++++.| +
T Consensus 156 ~~~~l~~~l~~ag~~------~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G-~ 228 (305)
T PRK05708 156 TAPAWLDDLREAGIP------HEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG-Q 228 (305)
T ss_pred chHHHHHHHHhcCCC------CccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 345555666654421 11222223333444443321 0134577899999999988 6
Q ss_pred C--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 216 S--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 216 ~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
+ .+.+.+.+......... ...++..++.+.+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 229 PAAAANLHEEVQRVIQATAA-NYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CccHHHHHHHHHHHHHhccC-CCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 5 23333333211111111 12344456655432 36777765 4789999999999988764
No 92
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.35 E-value=3.8e-12 Score=111.48 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=87.0
Q ss_pred CchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhh-cccccccCCchhHHHHH
Q 010652 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI-FKVKDEYGEGELVDKIL 260 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~-l~~~~~~~~~~~ld~i~ 260 (505)
|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 6788899999988763 443 6688999999999
Q ss_pred hhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHc
Q 010652 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 261 ~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s 296 (505)
||+. ++.+.|.+.|+|+|+.+.+ .+.|..
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 104 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQA 104 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHH
Confidence 9996 9999999999999999876 344433
No 93
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.34 E-value=2.6e-11 Score=135.93 Aligned_cols=192 Identities=18% Similarity=0.256 Sum_probs=134.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~-------~~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..+|..++ .+|++|++||++++.+++..+. ....|. .+++.++++++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 357999999999999999999 8899999999999865543211 000010 05777777754 3
Q ss_pred hhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhc
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~ 142 (505)
++ ||+||.+||....++.-+ .++.+.++++.|+...|++.+.+ ++++.+... |.||...|-. ..
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~------~~ 456 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEK------MP 456 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCcccc------Cc
Confidence 44 999999999998877544 78888888888887666655443 344444322 4555543210 00
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-.-+++| .++++++.+..+++.++ +.++.+. ...|..+ |.+ ...+++|++.++++ | +++++|
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl---~~~~~~EA~~lv~e-G-v~~~dI 520 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQG------KTPIVVR-DGAGFYV----NRI---LAPYINEAARLLLE-G-EPIEHI 520 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcC------CceEEEe-ccCcHHH----HHH---HHHHHHHHHHHHHc-C-CCHHHH
Confidence 0124444 58899999999999999 7777785 4666655 444 44556999999987 6 899999
Q ss_pred HHHHH
Q 010652 221 AEIFD 225 (505)
Q Consensus 221 ~~~~~ 225 (505)
+.++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 99864
No 94
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.34 E-value=2.8e-11 Score=137.09 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=121.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||.+++..|.++| ++|++||+++++.+.+.+.+.. .....+.+++++. +|+||+++|..
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH
Confidence 468999999999999999999999 4799999999987776654321 1134566776665 99999999984
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChh-hh-------hcCC--cccC--CC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP--SLMP--GG 150 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~-~a-------~~G~--~i~~--gg 150 (505)
.+.++++.+.+.+.++.+|+|.+++.......+.+.+....++|+. .|++|++. +. ..+. .+.+ ++
T Consensus 75 -~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 75 -AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 7899999999998899999999998876666666665544667765 68887653 11 1222 2233 46
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 151 ~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
+++.++.++++|+.+| ..++++.+.
T Consensus 154 ~~~~~~~~~~l~~~~G------~~~~~~~~~ 178 (735)
T PRK14806 154 DPAALARVDRLWRAVG------ADVLHMDVA 178 (735)
T ss_pred CHHHHHHHHHHHHHcC------CEEEEcCHH
Confidence 7888999999999999 556676553
No 95
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.33 E-value=1e-11 Score=113.72 Aligned_cols=99 Identities=16% Similarity=0.301 Sum_probs=82.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-------CCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-------LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~-------~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
||+|||.|.||.++|..|+++|++|++|.|+++.++.+.+.+.+... .++..++++++++++ +|+|+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 69999999999999999999999999999999999988875542110 157788999999987 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|. ...+++++++.++++++.+||.++.+.
T Consensus 78 Ps-~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99 578999999999999999999998776
No 96
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.32 E-value=6.1e-12 Score=134.19 Aligned_cols=119 Identities=17% Similarity=0.317 Sum_probs=101.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhHHHHHHHHHhcCC-CCCCC
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNP-NLASL 400 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~i---W~~GciIrs~lL~~i~~~~~~~~-~~~~l 400 (505)
.+++|++|++||+|+|+.|++++|+|.+++++. ++|.+++.++ |+.| ..+|++++....++..++ .-+..
T Consensus 181 ~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~-----Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f 254 (493)
T PLN02350 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVG-----GLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGY 254 (493)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCc
Confidence 478999999999999999999999999999642 3898888877 9998 789999999888876553 22356
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChhh
Q 010652 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLPA 451 (505)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~a 451 (505)
++|...++.-+|++| ||++++|.+.|+|+|.|++++. |.++++.+|..+
T Consensus 255 ~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~ 305 (493)
T PLN02350 255 LVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAA 305 (493)
T ss_pred hHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHH
Confidence 777777788889999 9999999999999999999998 788888877543
No 97
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.31 E-value=2.5e-11 Score=113.93 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=110.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
||+|+|+|.|.||.+||++|++.||+|.+-+|+.++..+........ .+ ...+.+++++. +|+||++||-. .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~---~i-~~~~~~dA~~~---aDVVvLAVP~~-a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP---LI-TGGSNEDAAAL---ADVVVLAVPFE-A 72 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc---cc-ccCChHHHHhc---CCEEEEeccHH-H
Confidence 47899999999999999999999999999966655433333322211 23 34577777777 99999999995 7
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh---------------hhHHHHHHHHHHc----CCeEEcCCCC-CChhhhhcCC-
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY---------------LNTERRIHEASQK----GLLYLGMGVS-GGEEGARHGP- 144 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~---------------~~t~~~~~~l~~~----gi~~v~~pvs-gg~~~a~~G~- 144 (505)
+..++.++...+. |+||||.+|..+ ..++..++.+... .++-+.+... ...... ...
T Consensus 73 ~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~-~~~~ 150 (211)
T COG2085 73 IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG-GRRD 150 (211)
T ss_pred HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC-Ccee
Confidence 8889999988775 999999999621 1122233333221 1222222211 111111 222
Q ss_pred cccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchh
Q 010652 145 SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGN 185 (505)
Q Consensus 145 ~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~ 185 (505)
.+++|.|.++.+.+..+.+.+| -..+-+|+...++
T Consensus 151 v~vagDD~~Ak~~v~~L~~~iG------~~~ld~G~L~~a~ 185 (211)
T COG2085 151 VLVAGDDAEAKAVVAELAEDIG------FRPLDAGPLENAR 185 (211)
T ss_pred EEEecCcHHHHHHHHHHHHhcC------cceeecccccccc
Confidence 5667778899999999999998 5677778754444
No 98
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.30 E-value=1.2e-10 Score=118.16 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=126.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||.++|.+|.+.|++|.+++++.++..+..... ++.. .+++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~-~s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEV-LTVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCee-CCHHHHHhc---CCEEEEcCCHH-H
Confidence 36899999999999999999999999999988766544433221 2343 388888887 99999999986 4
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh-----hhcCC-ccc-CCCC--HHH
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 154 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~-----a~~G~-~i~-~gg~--~e~ 154 (505)
...++ +++.+.+++|.+|+.++...... .+.....++..+- +|-..+... ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~----~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF----GQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh----ceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999887665533221 1111223444433 454444311 12344 445 5555 788
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEeCCCC-chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010652 155 YNNIRDILQKVAAQVDDGPCVTYIGEGG-SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~~G~~G-~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
.+.+..++..+|+..-|--.. .+.++- +--|=- +..+..+...++..++.++...| .+|+..
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~t-tf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIET-TFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCccceeee-eecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 999999999999542110000 111110 111100 12233456678888999999999 999854
No 99
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.27 E-value=3.3e-10 Score=114.73 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=156.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CCC----eeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLP----LTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g-~~~----i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++.+.+..-. ..+ .....+..+ .+..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~---~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE---ALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh---hcCCCCEEEEEec
Confidence 6899999999999999999999988999998876 777776543110 001 011111112 2234999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhh--cCC---cccCCCCH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGAR--HGP---SLMPGGSF 152 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~--~G~---~i~~gg~~ 152 (505)
+. +++++++.+.+.+.+.+.|+-.-|+....- ++.+..... |+.+.++--.+...-.. .|. ..+.|+.+
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 96 799999999999999999998888874333 555544443 22222222111111111 233 23455666
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhH---------------------HHHHHHHHHHHHHHHHHHH
Q 010652 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 153 e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~~ 211 (505)
+.++.+.++|+..+.+ +.+..+.-...+.|++-| ........++.|...++.+
T Consensus 155 ~~~~~i~~~~~~a~~~------~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~ 228 (307)
T COG1893 155 ELVKALAELFKEAGLE------VELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARA 228 (307)
T ss_pred HHHHHHHHHHHhCCCC------eEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHh
Confidence 7888888888776633 333333334444444443 2344566788999999998
Q ss_pred hCCCC--HHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHH
Q 010652 212 VGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 212 ~g~l~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
.| +. .+.+.+++....+.. .....++..+..+.+. -.+|.|.. ..++.|+++|+++|+...
T Consensus 229 ~g-~~~~~~~~~~v~~~~~~~~-~~~~sSM~qDl~~gr~-----tEid~i~G---------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 229 EG-VELPEEVVERVLAVIRATD-AENYSSMLQDLEKGRP-----TEIDAING---------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred cc-CCCCHHHHHHHHHHHHhcc-cccCchHHHHHHcCCc-----ccHHHHhh---------HHHHHHHHhCCCCcHHHH
Confidence 87 54 433444433222221 1122333445544322 36777765 468999999999999875
No 100
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.26 E-value=1.9e-09 Score=106.90 Aligned_cols=232 Identities=12% Similarity=0.083 Sum_probs=136.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+|||+|.||.+++..|.++|. +|+++||++++. ......++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEEeCH
Confidence 689999999999999999999873 499999987541 12345678888776 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH--cCCeEEcCCCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~--~gi~~v~~pvsgg~~~a~~G~-~i~~g--g~~e~~~~ 157 (505)
..+++++.++.+.+.++.+|.++++......+ +.+.. +-++++. +-+.....|. .+.++ .+++..+.
T Consensus 68 -~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~---~~~~~~~~vvr~mP----n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 68 -DLAGKVLLEIKPYLGSKLLISICGGLNLKTLE---EMVGVEAKIVRVMP----NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred -HHHHHHHHHHHhhccCCEEEEEeCCccHHHHH---HHcCCCCeEEEECC----CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 57999999999988765566666665533332 22221 1122222 1223334555 34433 35677889
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCC--chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF 235 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~ 235 (505)
++.+|+.+| .++++.+.- ....+--.--++.+..+..+.++ +.+.| ++.++..++...
T Consensus 140 v~~l~~~~G-------~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~--------- 199 (260)
T PTZ00431 140 VIDIFSACG-------IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQ--------- 199 (260)
T ss_pred HHHHHHhCC-------cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---------
Confidence 999999999 344443210 00000001122333444444444 45567 999988877532
Q ss_pred hHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchh
Q 010652 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (505)
Q Consensus 236 l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i 286 (505)
++.-+...+.+.+ ..+ -+...+....-||..-.+..-.+.|+.--++
T Consensus 200 ~~~G~a~ll~~~~-~~~---~~l~~~v~spgG~T~~gl~~le~~g~~~~~~ 246 (260)
T PTZ00431 200 TILGSVHMVKASD-QPV---QQLKDDVCSPGGITIVGLYTLEKHAFKYTVM 246 (260)
T ss_pred HHHHHHHHHHhcC-CCH---HHHHHhCCCCChHHHHHHHHHHHCChHHHHH
Confidence 2222233333211 122 2233333344456655555556677764433
No 101
>PLN02712 arogenate dehydrogenase
Probab=99.26 E-value=7.9e-11 Score=130.67 Aligned_cols=158 Identities=10% Similarity=0.144 Sum_probs=111.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+|++|||. ..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~-~~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSI-IS 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCH-HH
Confidence 468999999999999999999999999999998554 332222 34567788886532 28999999998 57
Q ss_pred HHHHHHHHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhh--hhcCC-cccC----CCCH---H
Q 010652 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGP-SLMP----GGSF---E 153 (505)
Q Consensus 86 v~~vl~~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~--a~~G~-~i~~----gg~~---e 153 (505)
+.++++++. +.+.++.+|+|++++.....+.+...+ ..+..|++ .|+.|.+.. ...+. .++. +.+. +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998886 678899999999988754444344433 33677887 588877631 11222 2232 2222 3
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
.++.++.+++.+| ..++.+.+.
T Consensus 200 ~~~~l~~l~~~lG------a~v~~ms~e 221 (667)
T PLN02712 200 RCKSFLEVFEREG------CKMVEMSCT 221 (667)
T ss_pred HHHHHHHHHHHcC------CEEEEeCHH
Confidence 4566779999999 456666543
No 102
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.26 E-value=1.4e-10 Score=119.79 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=109.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++|+|||+ |.||.++|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 578999999 99999999999964 899999998511 13467777776 99999999995
Q ss_pred chHHHHHHHHhhc---cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChh-hhhcCC-cc-cCCCCHHHHH
Q 010652 84 SPVDQTIAALSEH---MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHGP-SL-MPGGSFEAYN 156 (505)
Q Consensus 84 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~-~a~~G~-~i-~~gg~~e~~~ 156 (505)
.+.++++++.+. ++++.+|+|.+++........ ...+..|++. |+.|.+. +...|. .+ .++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899998875 789999999999875444333 2345679985 8888753 333454 33 4555566678
Q ss_pred HHHHHHHHhhcccCCCCcEEEeCCCC
Q 010652 157 NIRDILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~~G~~G 182 (505)
.++.+++.+| ..++.+.+..
T Consensus 138 ~v~~l~~~~G------a~v~~~~aee 157 (370)
T PRK08818 138 WVQSLCSALQ------AECVYATPEH 157 (370)
T ss_pred HHHHHHHHcC------CEEEEcCHHH
Confidence 8999999999 4677776643
No 103
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.24 E-value=9.4e-12 Score=109.22 Aligned_cols=110 Identities=16% Similarity=0.266 Sum_probs=74.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v-~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd- 79 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD- 79 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-
Confidence 47999999999999999999999999875 5899887777665422 1344567777666 99999999996
Q ss_pred hHHHHHHHHhhc--cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 85 PVDQTIAALSEH--MSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~--l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
++.++.++|... ..+|++|+++|.....+..+ -+.++|...
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~---p~~~~Ga~~ 122 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLA---PARERGAIV 122 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGH---HHHHTT-EE
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhh---hHHHCCCeE
Confidence 899999999987 78999999999987665543 345566543
No 104
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.14 E-value=2.8e-10 Score=106.56 Aligned_cols=195 Identities=14% Similarity=0.178 Sum_probs=132.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC---------C------CeeeeCCH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ---------L------PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~-------~~~g~---------~------~i~~~~s~ 63 (505)
+..|+|||.|.||+.+|..-+..|++|.++|++++.+.+..+.. .+++. + +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 45799999999999999999999999999999998765543211 00000 0 34556667
Q ss_pred HHHHhhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH----cCCeEEcC-CCCCCh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGM-GVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~----~gi~~v~~-pvsgg~ 137 (505)
.+++.+ +|+||.++-....++.-+ ..+-....+..+++. .|++..-+ ++...++. .|.||+.. ||+.-.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~t-NTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILAT-NTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEee-cccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777766 899988887766665444 455554555555544 34433322 33333332 28899885 666555
Q ss_pred hhhhcCCcccCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010652 138 EGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 138 ~~a~~G~~i~~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+..+. .-.+++.+..+..+-+++| +..+.+.+ -.|..| |.+ .+-.+.|+.++.+++. .+-
T Consensus 166 EVir~-----~~TS~eTf~~l~~f~k~~g------KttVackD-tpGFIV----NRl---LiPyl~ea~r~yerGd-Ask 225 (298)
T KOG2304|consen 166 EVIRT-----DDTSDETFNALVDFGKAVG------KTTVACKD-TPGFIV----NRL---LIPYLMEAIRMYERGD-ASK 225 (298)
T ss_pred hhhcC-----CCCCHHHHHHHHHHHHHhC------CCceeecC-CCchhh----hHH---HHHHHHHHHHHHHhcC-CcH
Confidence 54333 2347899999999999999 66666644 556554 444 5666799999999987 999
Q ss_pred HHHHHHHH
Q 010652 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~~~~ 225 (505)
++|+..++
T Consensus 226 eDIDtaMk 233 (298)
T KOG2304|consen 226 EDIDTAMK 233 (298)
T ss_pred hhHHHHHh
Confidence 99998874
No 105
>PRK07574 formate dehydrogenase; Provisional
Probab=99.09 E-value=2e-09 Score=111.91 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=95.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+|||++...+..... ++....+++|+++. +|+|++++|..+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986432222211 24556789999887 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GA 306 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGY 306 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEE
Confidence 9999 578888999999999999999999999999988655433
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.09 E-value=9.7e-10 Score=112.48 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+++|..|...|++|.+||++++..... .....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 579999999999999999999999999999998653321 1234688998887 99999999998777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ +++.+.+++|.++|+++.+..-+...+.+.+.+..+.....-|.-.+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 264 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENE 264 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCC
Confidence 7777 67888899999999999999999999999998765554444444333
No 107
>PLN03139 formate dehydrogenase; Provisional
Probab=99.06 E-value=3.6e-09 Score=109.91 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=96.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|..-|.+|.+||+++...+..... ++....++++++.. +|+|++++|..+.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999986433322221 23456799999987 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+.++ .+++..+++|.++|+++.+..-+...+.+.+++..+.....-|.
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~ 318 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW 318 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCC
Confidence 9998 57888999999999999999999999999998765544333333
No 108
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.05 E-value=1.1e-08 Score=102.75 Aligned_cols=244 Identities=18% Similarity=0.209 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHH
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~v 89 (505)
||..+|..|+++|++|++++|+ ++.+.+.+.+.. .+.. .+...+++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 666766654421 0100 0112223343 23489999999996 68999
Q ss_pred HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc----CCeEEcCCCCCChhhhhcCC-cccCCC---CHHHHHHHHHH
Q 010652 90 IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYNNIRDI 161 (505)
Q Consensus 90 l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~----gi~~v~~pvsgg~~~a~~G~-~i~~gg---~~e~~~~v~~l 161 (505)
++.+.+.+.++.+|+...|+... .+.+.+.+... |+.+.++-..+...-...+. .+..|. +.+..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999998999998888632 33444444322 12222222221111111122 333332 22445566666
Q ss_pred HHHhhcccCCCCcEEEeCCCCchhhhhhHhHH---------------------HHHHHHHHHHHHHHHHHHhCCCC--HH
Q 010652 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (505)
Q Consensus 162 l~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l~~~~g~l~--~~ 218 (505)
|+..+- .+....+.-...+.|++-|. .......++.|+..++++.| ++ .+
T Consensus 155 l~~~~~------~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~~ 227 (293)
T TIGR00745 155 LNEAGI------PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPDD 227 (293)
T ss_pred HHhCCC------CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 766552 22222223333334443331 33445677899999999987 66 33
Q ss_pred HHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHH
Q 010652 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A 289 (505)
.+.+.+.........+ ..++..++...+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~-~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~l 283 (293)
T TIGR00745 228 EVEELVRAVIRMTAEN-TSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRTL 283 (293)
T ss_pred HHHHHHHHHHhcCCCC-CChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHHH
Confidence 3444443322211111 1233345544322 36677664 5789999999999988753
No 109
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.02 E-value=5.4e-09 Score=99.53 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=94.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|++|.+.|++|+++|+++++++++.+.. +.... +.+++... .+|+++.|...+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~------g~~~v-~~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF------GATVV-APEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc------CCEEE-cchhhccc--cCCEEEecccccccC
Confidence 6799999999999999999999999999999999888776542 12333 33445442 399998776554333
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCC-CCChhhhhcCCcccCCCCH-HHHHHHHHH
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV-SGGEEGARHGPSLMPGGSF-EAYNNIRDI 161 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pv-sgg~~~a~~G~~i~~gg~~-e~~~~v~~l 161 (505)
++.+ +.+ +.++|++.+|....+ .+..+.++++|+.|++ ... +||. ..+-..|+++.+ ++.++++++
T Consensus 100 ~~~~----~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~~~~~~~~~~~~ 168 (200)
T cd01075 100 DDTI----PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGNEARVLAKVEAI 168 (200)
T ss_pred HHHH----HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCcHHHHHHHHHHH
Confidence 3333 334 368999999987654 6788889999999987 444 5543 222244556553 444444444
No 110
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.00 E-value=2.7e-09 Score=109.40 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=95.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|...|++|.+|||++.... .... +.. ..+++++++. +|+|++++|....+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999875432 1111 122 4589999887 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
+.++ ++....+++|.++|++|.+...+...+.+.+.+..+.....-|.-
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~ 268 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFE 268 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCC
Confidence 8888 678888999999999999999999999999987655443333433
No 111
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.99 E-value=9.6e-09 Score=101.77 Aligned_cols=143 Identities=18% Similarity=0.298 Sum_probs=99.1
Q ss_pred HHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccC
Q 010652 21 LALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMS 98 (505)
Q Consensus 21 lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~ 98 (505)
+|+.|.++| ++|++||++++..+...+.+... ....+ .+.+.+ +|+||+|+|.. .+.++++++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~-----~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID-----EASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS-----EEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee-----eccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 78999999999888877665432 23333 556665 99999999995 78999999999999
Q ss_pred CCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCCh----h----hhhcCC--cccCCC--CHHHHHHHHHHHHHh
Q 010652 99 PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE----E----GARHGP--SLMPGG--SFEAYNNIRDILQKV 165 (505)
Q Consensus 99 ~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~----~----~a~~G~--~i~~gg--~~e~~~~v~~ll~~i 165 (505)
+|.+|+|.+++.......+.+.+. .+..|++. |+.|.+ + ....|. .++++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998777766666555 67889985 777762 1 222344 334343 568899999999999
Q ss_pred hcccCCCCcEEEeCC
Q 010652 166 AAQVDDGPCVTYIGE 180 (505)
Q Consensus 166 ga~~~~~~~v~~~G~ 180 (505)
| ..++.+.+
T Consensus 150 G------a~~~~~~~ 158 (258)
T PF02153_consen 150 G------ARVVEMDA 158 (258)
T ss_dssp T-------EEEE--H
T ss_pred C------CEEEEcCH
Confidence 9 45677754
No 112
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.98 E-value=1.7e-08 Score=102.45 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=96.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~-~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||.++|++|.++|++|.++++. +++.+.+.+.+ +.. .+.+++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 68999999999999999999999998876554 34445544332 343 467888776 9999999998646
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChhh-----hhcCC-ccc-CC--CCHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG-----ARHGP-SLM-PG--GSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~-----a~~G~-~i~-~g--g~~e~~ 155 (505)
...+++++.+.+.++.+ |..+.+..- ......+. .+...+ -+|-..+... ...|. .++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~i-Vs~aaG~~i--~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGKT-LGFSHGFNI--HFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCcE-EEEeCCccH--hhccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 67677889998887864 444444322 22233332 234333 3565444310 02444 443 33 366788
Q ss_pred HHHHHHHHHhhc
Q 010652 156 NNIRDILQKVAA 167 (505)
Q Consensus 156 ~~v~~ll~~iga 167 (505)
+.+..+++.+|.
T Consensus 149 ~~~~~~~~~iG~ 160 (314)
T TIGR00465 149 AIALAYAKAIGG 160 (314)
T ss_pred HHHHHHHHHcCC
Confidence 899999999993
No 113
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.98 E-value=1e-08 Score=96.26 Aligned_cols=203 Identities=15% Similarity=0.235 Sum_probs=133.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccCCC-------CeeeeCCHHHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQL-------PLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~-----------~~~~~g~~-------~i~~~~s~~e~v 67 (505)
..||+|+|.|.+|+++|..|+..||+|..||+.++.+....+ .+.-.|++ .+..+++++|++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 468999999999999999999999999999999986543332 22212211 355688999999
Q ss_pred hhcCCCcEEEEecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCC--
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~-- 144 (505)
+. +=.|-.|+|.+-..+.-+ .++-..+. ..+|+..||+.+..+. ...-+..+.-..+..||-.. ..-|
T Consensus 83 k~---Ai~iQEcvpE~L~lkk~ly~qlD~i~d-~~tIlaSSTSt~mpS~-~s~gL~~k~q~lvaHPvNPP----yfiPLv 153 (313)
T KOG2305|consen 83 KG---AIHIQECVPEDLNLKKQLYKQLDEIAD-PTTILASSTSTFMPSK-FSAGLINKEQCLVAHPVNPP----YFIPLV 153 (313)
T ss_pred hh---hhhHHhhchHhhHHHHHHHHHHHHhcC-CceEEeccccccChHH-HhhhhhhhhheeEecCCCCC----cccchh
Confidence 97 777888999987766555 44444444 4556666666544442 23333333333455554321 1111
Q ss_pred ccc--CCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010652 145 SLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~i~--~gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++ +=.+++++++.+.+++++|. ..+....+--|.. .|.+.|++. +|.++|...++ ++..+++.
T Consensus 154 ElVPaPwTsp~tVdrt~~lM~sigq------~pV~l~rei~Gf~----lnriq~Ail---ne~wrLvasGi-l~v~dvD~ 219 (313)
T KOG2305|consen 154 ELVPAPWTSPDTVDRTRALMRSIGQ------EPVTLKREILGFA----LNRIQYAIL---NETWRLVASGI-LNVNDVDA 219 (313)
T ss_pred eeccCCCCChhHHHHHHHHHHHhCC------CCcccccccccce----eccccHHHH---HHHHHHHHccC-cchhhHHH
Confidence 122 23578899999999999994 2333333333443 466666554 99999999887 99999988
Q ss_pred HHHHhccCCcch
Q 010652 223 IFDEWNKGELES 234 (505)
Q Consensus 223 ~~~~~~~g~~~s 234 (505)
++ +.|-+..
T Consensus 220 Vm---S~GLG~R 228 (313)
T KOG2305|consen 220 VM---SAGLGPR 228 (313)
T ss_pred HH---hcCCCcc
Confidence 87 4454433
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.95 E-value=5.7e-09 Score=107.08 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=90.1
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||+.+|.+|+ ..|.+|.+||+++.... .. .+....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~-------~~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---AT-------YVDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hh-------hccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 68999999999999999994 56889999999875421 11 12345689999887 9999999999877
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.+.++ .++.+.+++|.++|++|.+...++..+.+.+.+..+...
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ga 258 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGA 258 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEE
Confidence 77665 567788999999999999999999999999987655433
No 115
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.95 E-value=8e-08 Score=94.25 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=149.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHH---------------hhcccCCCCeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLD---------------RAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~---------------~~~~~g~~~i~~~~s~~e~v~ 68 (505)
++||+.||+|++|.+-...++-+. .+|++.|.+..++.+... +-.. .++.++++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crg---knlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRG---KNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcC---CceeeecchHHHhh
Confidence 368999999999999988887664 468899999988754432 1111 16788889999888
Q ss_pred hcCCCcEEEEecCCCc--------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHH--HcCCeEEcCC
Q 010652 69 SIQRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKGLLYLGMG 132 (505)
Q Consensus 69 ~l~~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~--~~gi~~v~~p 132 (505)
+ +|+||++|.++. -+++....++......+||+.-||+.....+.+...+. .+|++|-
T Consensus 78 e---adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fq--- 151 (481)
T KOG2666|consen 78 E---ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQ--- 151 (481)
T ss_pred h---cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeE---
Confidence 7 999999996542 24555566777777789999999999999988888875 3466652
Q ss_pred CCCChhhhhcC--------C-cccCCCC--HHHHHHHHH---HHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHH
Q 010652 133 VSGGEEGARHG--------P-SLMPGGS--FEAYNNIRD---ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (505)
Q Consensus 133 vsgg~~~a~~G--------~-~i~~gg~--~e~~~~v~~---ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (505)
+...|+...+| | .+++||. +|.++.++. +++..- .... +......+++..|++.|++.+.-
T Consensus 152 ilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwv----p~~~-iittntwsselsklaanaflaqr 226 (481)
T KOG2666|consen 152 ILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWV----PREQ-IITTNTWSSELSKLAANAFLAQR 226 (481)
T ss_pred eccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhC----cccc-eeeccccHHHHHHHHHHHHHHHH
Confidence 22233444444 3 5677884 455555544 444333 1122 33346789999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 199 MQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 199 ~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
+..++-+.++|+..| .+..++..+.
T Consensus 227 issins~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 227 ISSINSMSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred HhhhHHHHHHHHhcC-CCHHHHHHHh
Confidence 999999999999999 9999888775
No 116
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.95 E-value=4.6e-09 Score=106.13 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=93.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|..+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999998889999999998432 111 0124689999887 99999999999988
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
+.++ .+.+..+++|.++|++|.+...++..+.+.+.+..+.....-|...
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 8888 5678889999999999999999999999999876454433334433
No 117
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.94 E-value=2.9e-09 Score=96.69 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=85.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|+|+|.||..++..|++.| ++|+++||++++.+++.+...... ......+.++++++ +|+||+++|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 368999999999999999999996 789999999998887765532100 00234566666555 999999999975
Q ss_pred h-HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 P-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~-v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
. ++.+... ...++++.+++|+++..+ .+ .+.+.+++.|+.|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 4 2322211 123678999999988754 44 7778888888877753
No 118
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.93 E-value=4.5e-09 Score=106.75 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=93.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||+++++...+. ......++++++.. +|+|++++|..+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999765421110 01123578888887 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+.....-|.
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 9988 46788899999999999999999999999998875544333343
No 119
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.93 E-value=6e-09 Score=97.38 Aligned_cols=112 Identities=12% Similarity=0.211 Sum_probs=90.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||+..........+ + ...+++|+++. +|+|++++|..+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 6899999999999999999999999999999988655333321 2 45799999998 99999999988777
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+++..+...
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga 149 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGA 149 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceE
Confidence 7777 677888999999999999998899999998887655433
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.89 E-value=1.6e-08 Score=100.84 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+.+.+++|||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+.+++++.++ +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEE
Confidence 5554457999999999999999999874 78876 889999988777654211 2456889999876 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE-EcCCCCCCh
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~-v~~pvsgg~ 137 (505)
+|+|.. ...++.... +..|+.++..+.....+.+++.+.++++|..+ +..+..+|-
T Consensus 73 i~tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 73 EAAPAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred ECCCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 999985 455555444 34666566566655556778888888888765 544544443
No 121
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.84 E-value=1.7e-08 Score=101.25 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=113.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.++|++|.+.|++|.+||+.....+.+...+ +.. .+++|+++. +|+|++++|++ ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999997644433333222 333 489999987 99999999985 45
Q ss_pred HHHH-HHHhhccCCCCEEEeCC--CCChhhHHHHHHHHHHcCCeEE-cCCCCCChhhh---hcC--C-cccC---CCCHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGA---RHG--P-SLMP---GGSFE 153 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~s--t~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~~a---~~G--~-~i~~---gg~~e 153 (505)
+.++ +++.+.+++|.+++-.- |.++. .....+++..+ -+|=..|.... ..| . ++++ --+..
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~hgfni~~~------~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~ 158 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSHGFNIHFG------QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGT 158 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCcceecC------ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCc
Confidence 7777 57999999999876543 23332 12233455443 34544443211 122 2 2221 12233
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeC--C----CCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 154 AYNNIRDILQKVAAQVDDGPCVTYIG--E----GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 154 ~~~~v~~ll~~iga~~~~~~~v~~~G--~----~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
+.+.+......+|+-- .-++... + .=-|+ +..+-.+...++--.+..+.+.| .+|+.
T Consensus 159 a~~~ala~a~~iG~~r---agv~~ttf~~EtetDlfgE-----q~vL~Gg~~~li~~gfe~lveaG-y~pe~ 221 (335)
T PRK13403 159 ALHVALAYAKGVGCTR---AGVIETTFQEETETDLFGE-----QAVLCGGVTALVKAGFETLTEGG-YRPEI 221 (335)
T ss_pred HHHHHHHHHHHcCCCc---eeEEecchHHHHhhhhccc-----chhhHHHHHHHHHHHHHHHHHcC-CCHHH
Confidence 5667777777777421 0111110 0 00000 11233455666677777778887 88874
No 122
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.78 E-value=3.7e-08 Score=107.11 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+||+.... +..... ++...++++++++. +|+|++++|..+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986322 112221 23445689999887 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gA 251 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEE
Confidence 8888 567778999999999999999999999999988766543
No 123
>PLN02928 oxidoreductase family protein
Probab=98.77 E-value=8.4e-08 Score=98.94 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH--------HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL--------DRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~--------~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.||+.+|+.|...|.+|.+|||+..+..... ...... .....++++++.. +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE----KGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc----cCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999843211110 000000 0134588899887 999999
Q ss_pred ecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++|.....+.++ ++.+..+++|.++|+++-+..-+...+.+.|.+..+.....-|.-
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 999988888888 678888999999999999998899999999887655443333433
No 124
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.75 E-value=5e-08 Score=106.10 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=91.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++|+++. +|+|++++|..+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 122222 23444 89999887 99999999999889
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 9888 6788889999999999999999999999999876443
No 125
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.75 E-value=4.7e-08 Score=88.35 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..++..+.| +. ..+.+|+++. +|+|++.+|+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~- 71 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE- 71 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-
Confidence 35899999999999999999999999999988877 445555443 33 4688999987 99999999994
Q ss_pred hHHHHH-HHHhhccCCCCEEEeCC
Q 010652 85 PVDQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iiId~s 107 (505)
.-.++. +++.|.|++|++++-..
T Consensus 72 ~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 72 VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 556676 89999999999887653
No 126
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.71 E-value=5.1e-08 Score=101.31 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
++|||||+|.||+.+|+.+...|++|.+||+..... .+ .....+++++++. ||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EG-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----cc-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 579999999999999999999999999999864321 11 1234689999887 999999999865
Q ss_pred --hHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 85 --PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 85 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+...++ ++.+..+++|.++|++|.+..-+...+.+.+.+..+.....-|...+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~E 237 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGE 237 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 366666 56788899999999999999999999999888765443333344433
No 127
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.69 E-value=1.9e-07 Score=92.51 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=109.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||.|.||+-+|..|.++||.|...||+. -+.+.+.- +...++.+.++++. .+|+|++|+..- .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y------g~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY------GSAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh------cccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 469999999999999999999999999999986 44444432 23456788888875 599999999884 68
Q ss_pred HHHHHHHhhc-cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChhhhhcCC--cccC----CC----CHHH
Q 010652 87 DQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP--SLMP----GG----SFEA 154 (505)
Q Consensus 87 ~~vl~~l~~~-l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~~a~~G~--~i~~----gg----~~e~ 154 (505)
+.++...-+. ++.|++++|..+..........+.+++ .+..+.+ |+.|.......+. .++. .| .+|.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777665 889999999988876666666676654 5666665 5555442333322 2221 23 3678
Q ss_pred HHHHHHHHHHhhc
Q 010652 155 YNNIRDILQKVAA 167 (505)
Q Consensus 155 ~~~v~~ll~~iga 167 (505)
++.+.++|...+.
T Consensus 201 cE~fleIf~cegc 213 (480)
T KOG2380|consen 201 CEFFLEIFACEGC 213 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 8888899988884
No 128
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.69 E-value=1e-07 Score=97.03 Aligned_cols=110 Identities=13% Similarity=0.239 Sum_probs=92.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||||+|.+|+.+|..+..-|.+|.+||+...+..... . ......+++++++. +|+|.+.+|-.+..
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-~-------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-D-------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-c-------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 5799999999999999999999999999999433321111 1 24556899999998 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 9888 5677889999999999999999999999998875443
No 129
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.66 E-value=1.5e-07 Score=95.75 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... .. .+ ...+++++++. +|+|++++|-.+..
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999974321 11 12 24589999887 99999999999888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
+.++ ++.+..+++|.++|+++-+..-+...+.+.|++..+. ...-|.-.+
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~E 261 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKE 261 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCC
Confidence 8888 6778889999999999999999999999999876555 433444333
No 130
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.66 E-value=1.5e-07 Score=99.24 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+++... .. ......+++++++. +|+|++.+|..+..
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 579999999999999999999999999999874311 11 13445689999987 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+.....-|.
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf 266 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVF 266 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence 8888 57788899999999999999999999999998775544333333
No 131
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=93.90 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=95.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +.... +++|++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~-~l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYV-DLDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceec-cHHHHHHh---CCEEEEeCCCChHH
Confidence 6899999999999999999977889999999975 1122221 12334 49999998 99999999999999
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
...+ .+.+..+++|.++|+++-+..-+...+.+.|++..+.-.+.-|.-.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~ 265 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFEN 265 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCC
Confidence 9998 6778889999999999999999999999999887554444444433
No 132
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.63 E-value=5.1e-07 Score=92.19 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=89.4
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++||||+|.+|+.+|+.+. .-|.+|.+||+...... .... +.. ..+++++++. +|+|++++|-.+.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 77889999998753211 1111 123 3589999987 9999999999988
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5788889999999999999999999999999876554
No 133
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.61 E-value=2.1e-07 Score=93.48 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=80.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.||..+|..|...|.+|+++||++++.+.+.+.+.. .....++++++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 579999999999999999999999999999999876665443211 1112344555554 99999999875 11
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
. .+..+.++++.+|||.++..-.+-. +..+++|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 4456678889999999886544322 45567788777554
No 134
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.61 E-value=5e-07 Score=92.15 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=88.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... .. ....+++++++. +|+|++++|-.+..
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~--------~~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR--------PDRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc--------ccccCHHHHHHh---CCEEEECCCCChHH
Confidence 57999999999999999999999999999986321 00 113489999887 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.++ .+....+++|.++|+++-+..-+...+.+.+.+..+..
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~g 254 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGG 254 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 8888 67788899999999999999999999999998765543
No 135
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.61 E-value=4.4e-07 Score=90.29 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=82.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||||||+|.||..++..+.+. +++ +.++|+++++.+++.+.. +...+.++++++.. +|+|++|+|+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~~ 72 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASVN 72 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCChH
Confidence 6899999999999999999876 466 558999999888776532 24567899998755 99999999874
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC---ChhhHHHHHHHHHHcCCe-EEcCCCCCChh
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~t~~~~~~l~~~gi~-~v~~pvsgg~~ 138 (505)
...+.+..++. .|.-++..|.. .....+++.+..++.|.. ++..+..+|-.
T Consensus 73 -~~~~~~~~al~---~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d 127 (265)
T PRK13304 73 -AVEEVVPKSLE---NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLD 127 (265)
T ss_pred -HHHHHHHHHHH---cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHH
Confidence 55555555443 45545555552 334455666666677754 44444444433
No 136
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.59 E-value=1.4e-05 Score=78.70 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=111.3
Q ss_pred CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 29 GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 29 G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.++|.+|||++++.+.+.+.. ++....+..++++. +|+||+||++ ..++++++++.+.+.++++||+..+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 468999999999988876542 24567888888887 9999999995 6899999999887777889999988
Q ss_pred CChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCC-cccCCC--CHHHHHHHHHHHHHhhcccCCCCcEEEeCCC--C
Q 010652 109 EWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEG--G 182 (505)
Q Consensus 109 ~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~-~i~~gg--~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~--G 182 (505)
+.+.. .+.+.+.. +...+- +|-. +.....|. .+.++. +++..+.++.+|+.+| .++++.+. -
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~ 146 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMD 146 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcc
Confidence 87544 44444432 122332 4532 33344666 444442 5566788999999999 34444331 1
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010652 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~ 225 (505)
....+--.-.++.+..+..+.++ +.+.| +++++..++..
T Consensus 147 ~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 147 AVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred hHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 11111112234444455555554 45567 99999888763
No 137
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.59 E-value=4.4e-07 Score=92.39 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=91.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... .. . ....+++++++. +|+|++++|-.+..
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~--------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R--------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c--------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999986421 00 0 113589999987 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.....-|.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 8888 67788899999999999999999999999998765543333343
No 138
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.58 E-value=2.1e-07 Score=96.44 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=89.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|+.|..-|.+|.+||+.... ... .....+++++++. ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~------~~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD------RGD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc------ccc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 58999999999999999999999999999975321 110 0124689999987 9999999986553
Q ss_pred ---HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
...++ ++.+..+++|.++|++|-+..-+...+.+.+++..+.....-|.-.+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~E 237 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGE 237 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCC
Confidence 56666 57788899999999999999999999999888764433333344333
No 139
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.56 E-value=3.3e-06 Score=80.91 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=131.7
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHHHH-HHhhcccCCCCeeeeCCHH
Q 010652 6 LSRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVDET-LDRAHREGQLPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgiIGlG~m--------------------G~~lA~~La~~G~~V~v~dr~~~~~~~~-~~~~~~~g~~~i~~~~s~~ 64 (505)
+|||.|+|+|+- |..||..++++||+|.+.|.|.+-.++- .+..... ++...++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 368999999864 6789999999999999998887643322 2222222 467788888
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHH-HHHHHH--Hc--CCeE-EcCCCCCChh
Q 010652 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER-RIHEAS--QK--GLLY-LGMGVSGGEE 138 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~-~~~~l~--~~--gi~~-v~~pvsgg~~ 138 (505)
+.++. +++.++.+|-+...-.+.++|+++++.|.+|.++.|++|...-. ++..++ .+ |+.- ..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 99999999999888889999999999999999999988766443 233332 22 4432 2234544432
Q ss_pred hhhcCCcccCC--------CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010652 139 GARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 139 ~a~~G~~i~~g--------g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+|-.++.| .+++..+++.++.++.| +.++.+...-.....-| .-.+....++.+.+-|....
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~G------k~~yv~padv~s~VaDm-g~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTG------KEVYVLPADVVSAVADM-GVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------CceEecCHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 33323322 26778889999999999 66666543222222222 12334446677778888777
Q ss_pred HhCCCCHHHH
Q 010652 211 HVGGLSNAEL 220 (505)
Q Consensus 211 ~~g~l~~~~i 220 (505)
+.-|.+.+.|
T Consensus 225 qIi~AP~eMI 234 (340)
T COG4007 225 QIIGAPKEMI 234 (340)
T ss_pred HHhCCcHHHH
Confidence 6543554433
No 140
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.53 E-value=2.8e-07 Score=93.90 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=85.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+.....+ .++..+.++++++++ +|+|+.++|...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999986554 45789999999999998887632111 135677899988877 999988888763
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+ ++.. ..+++|. +|++.++.+...+++...+.+++..|+|-
T Consensus 202 p---vl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 P---LVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred C---EecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 3 3321 3567887 67777777777777777776677778874
No 141
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.50 E-value=3e-07 Score=92.02 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=62.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 579999996 999999999999999999998652 267777776 9999999999876
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++.+. +.+|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66554 78999999998764
No 142
>PLN02306 hydroxypyruvate reductase
Probab=98.46 E-value=1.6e-06 Score=90.44 Aligned_cols=128 Identities=9% Similarity=0.153 Sum_probs=94.3
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhH-HHHHHHh-hc---ccCC--CCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSK-VDETLDR-AH---REGQ--LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La-~~G~~V~v~dr~~~~-~~~~~~~-~~---~~g~--~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.+|+.+|+.+. .-|.+|.+||+++.. .+.+... +. ..+. .......+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 679999999998642 1211111 00 0000 011224589999887 999999
Q ss_pred ecCCCchHHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCCh
Q 010652 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~ 137 (505)
++|-....+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|...+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~E 302 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE 302 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCC
Confidence 999988888888 67788899999999999999889999999988765544434444433
No 143
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.40 E-value=1.4e-06 Score=78.72 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=76.1
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CCCCe---eeeCCHHHHHhhcCCCcEEEEecC
Q 010652 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQLPL---TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~----g~~~i---~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+..- +.... ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 777766554210 00001 11112212233 4899999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l 121 (505)
+. +++++++.+.+.+.+++.|+-..|+... .+.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMGN-EEVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSSH-HHHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCCc-HHHHHHHc
Confidence 95 7899999999999998888888888643 23444443
No 144
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.36 E-value=9.5e-06 Score=70.18 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=81.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|||||+|.+|......+.+. +++|. ++|+++++.+.+.+.. ++..++|.+++++. .++|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3799999999999999898877 45654 7899999988876543 45689999999984 2489999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+ .+...+..- -.++++- -.....+.+++.+..+++|..+
T Consensus 74 ~h~~-~~~~~l~~g--~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAE-IAKKALEAG--KHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHH-HHHHHHHTT--SEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHH-HHHHHHHcC--CEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 5444 333333321 1566663 2335677778888877777653
No 145
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.35 E-value=2.4e-06 Score=86.29 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=79.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
..+++|||+|.+|..++..|...|.+|+++||++++.+.....+.. .....++.+.+.+ +|+||.++|...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~~---aDiVI~t~p~~~- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVGK---IDIIFNTIPALV- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhCC---CCEEEECCChhh-
Confidence 3689999999999999999999999999999998876655543321 1112344455554 999999998641
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+-++....+.++.+|||.++..-. +.- +..+++|+..+.+
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pgg-td~--~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGG-TDF--EYAEKRGIKALLA 262 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCC-cCe--eehhhCCeEEEEE
Confidence 224566778899999999886544 321 3456678877764
No 146
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.34 E-value=4.4e-06 Score=84.57 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=91.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
-++|||+|+|.+|+.+|.+|..-|..+..++|++...+...+... . ..+.++++.+ +|+|++++|..+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCHH
Confidence 468999999999999999999999556666887776666554432 1 4688888887 9999999999999
Q ss_pred HHHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
+..++ .++...+.+|.+||+++-+..-+-+.+.+.+++-
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 99999 6788999999999999999999998888888764
No 147
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.32 E-value=2e-06 Score=85.86 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ ... ..+.++.. +..+|+||.++|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCCC
Confidence 57999999999999999999999999999999998887765432111 112 22344322 224899999999862
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.++.+.- ....+.++.+++|++...+.+ .+.+..+++|..+++
T Consensus 193 ~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 193 NIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1211100 023467899999998876654 567777888887765
No 148
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.26 E-value=4.2e-05 Score=72.50 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=82.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999998 99999999999999999861 11 89999999995 5
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChhhhhcC---CcccC--CCCHHHHHHHH
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYNNIR 159 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~~a~~G---~~i~~--gg~~e~~~~v~ 159 (505)
+.++++++. .+|+|.+++...- .+ .+..|++. |+.| ++.+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i----~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPF----KK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHH----HH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 3799999987532 11 24578885 7776 4444433 32222 34667778888
Q ss_pred HHHHHhhcccCCCCcEEEeCCCC
Q 010652 160 DILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~~G~~G 182 (505)
.+++ | ..++.+.+..
T Consensus 109 ~l~~--G------~~~~~~t~ee 123 (197)
T PRK06444 109 EMFR--G------YHFVEMTADE 123 (197)
T ss_pred HHHc--C------CEEEEeCHHH
Confidence 8887 6 4567776543
No 149
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=2.5e-06 Score=85.50 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~d-r~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++. +|+|++|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5799999 99999999999999999999995 553 34556665 999999999987
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.++.++ +.+|.+|||+|...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 655543 78999999998764
No 150
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.25 E-value=5.4e-06 Score=84.42 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||..++..|...| .+|+++||++++.+++.+.... .....++..+.+.. +|+||.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 468999999999999999999866 6799999999988877765321 11222334454444 999999999876
Q ss_pred hHHHHHHHHhhcc-CCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iiId~st 108 (505)
. ...+..+.... .++.++||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 5 44444444333 35789999984
No 151
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.24 E-value=1.8e-05 Score=82.01 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++|-|||+|.+|+..|..|+++| ++|++-||+.++.+++......+ ..... ..+.+++.+-+++.|+||.++|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999999999999999999999 99999999999999887653110 11111 22444444444558999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE-EcCCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~-v~~pvsgg~~ 138 (505)
... ..+++. .++.|.-++|+|...+.. .++.....+.|+.. +++++..|..
T Consensus 79 ~~~-~~i~ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 79 FVD-LTILKA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred hhh-HHHHHH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 632 334333 455789999999877664 67777777778765 4577776644
No 152
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.19 E-value=6.4e-06 Score=83.37 Aligned_cols=110 Identities=39% Similarity=0.710 Sum_probs=97.3
Q ss_pred eCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhccCC-cchhhHhhhhhhcccccccCCchh
Q 010652 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL 255 (505)
Q Consensus 178 ~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ 255 (505)
.|.. +++|++||++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++++.+++.+++ .
T Consensus 164 ~G~~---~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~ 231 (298)
T TIGR00872 164 CGSG---HFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------D 231 (298)
T ss_pred ccHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------c
Confidence 4665 78999999999999999999999999974 3799999887 78886 69999999999987632 4
Q ss_pred HHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcccc
Q 010652 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 256 ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~~~ 299 (505)
++.+.+.+.++++|+|++.+|.++|+|+|++++|++.|+.|..+
T Consensus 232 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 232 LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 56788888899999999999999999999999999999999877
No 153
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.18 E-value=4.8e-06 Score=74.23 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||+.++..|++.|.+ |+++||+.++.+++.+..... ...+...+++.+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 46899999999999999999999997 999999999999988765211 0112334455555555 999999999985
Q ss_pred hHHHHHHHHhhccCCC-CEEEeCCCCChhhH
Q 010652 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNT 114 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~t 114 (505)
. .+-++..+...+. .+++|.+. |.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~--Pr~i 114 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV--PRDI 114 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S--S-SB
T ss_pred c--ccCHHHHHHHHhhhhceecccc--CCCC
Confidence 4 1223333332222 49999973 4444
No 154
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.12 E-value=1.7e-05 Score=80.65 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHH----hhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD----RAHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~----~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+.... .....+ ..+++.+.+.++ +.+ +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 3699999999999999999999876 99999999876543221 111000 013444456654 344 9999998
Q ss_pred cCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+..+ +.++++++.+.+.. +..++|..+|-..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d 123 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD 123 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 7322 12445556666665 4566777766543
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.09 E-value=1.4e-05 Score=81.79 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|.||...+..|.. ...+|.+|||++++.+.+.+.....+ ..+..+.++++++++ +|+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g-~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE-VPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC-CcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997666653 45689999999999988876432111 135678999999987 999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ++ ...+++|..|...|+..|
T Consensus 205 P~---~~--~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 PV---VK--ADWVSEGTHINAIGADAP 226 (325)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCc
Confidence 43 21 234678998888877655
No 156
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.05 E-value=9.6e-06 Score=80.68 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||. |.||.+||.+|.++|+.|++|... +.++++.++. +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 57999999 999999999999999999999311 2367777777 9999999999876
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++... +.+|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 66543 78999999998764
No 157
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.05 E-value=1.9e-05 Score=77.91 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||.|.-|.+-|+||.++|.+|++--|.... .+.+.+.| +. ..+++|++.. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 58999999999999999999999999988776655 33333332 33 5699999987 99999999995 4
Q ss_pred HHHHHH-HHhhccCCCCEEEe
Q 010652 86 VDQTIA-ALSEHMSPGDCIID 105 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iiId 105 (505)
-.++.+ ++.|.|.+|+.+.-
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEe
Confidence 566775 99999999986643
No 158
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.05 E-value=5.2e-05 Score=71.78 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||+||+|.+|..+...+.+. +++ |.+|||+.++..++.+... ...+++++|+++. +|+++.|...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 4799999999999999877754 354 7799999999888776432 2445899999876 9999999866
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+++++...+++.. ..+-+|+..+.-..+...++...+.+.+-+.+
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv 115 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARV 115 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEE
Confidence 4666665554442 12334444444443444444444555544433
No 159
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=8.9e-05 Score=71.93 Aligned_cols=98 Identities=20% Similarity=0.311 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH--hhcccCCCCeeeeCCHHHHHhh--cCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD--RAHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~--~~~~~g~~~i~~~~s~~e~v~~--l~~advIil~vp~ 82 (505)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++.+ .... -+....+-.+++++ +..+|+++.++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~----~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH----VVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE----EEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 58999999999999999999999999999999999888554 2211 13344455555554 3568999999888
Q ss_pred CchHHHHHHHHhhc-cCCCCEEEeCCCC
Q 010652 83 GSPVDQTIAALSEH-MSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~-l~~g~iiId~st~ 109 (505)
+ .+..++-.+... +....+|.-..+.
T Consensus 77 d-~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 77 D-EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred C-HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 5 567777666543 5566677666554
No 160
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.96 E-value=3.7e-05 Score=67.45 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=70.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChh-H----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTS-K----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~-~G~~V~-v~dr~~~-~----~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|+|+ |.||+.++..+.+ .|+++. ++|++++ . +.++.... . .++...++++++.+. +|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~---~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-P---LGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T----SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-C---cccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 788855 6788872 1 11121111 1 246778999999988 999998
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
...+ +.+.+.++.... .|..+|-++|+......+..+.+.++
T Consensus 74 fT~p-~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-H-HHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cCCh-HHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 8733 455555554444 47888888998865555555555544
No 161
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.96 E-value=5.8e-05 Score=76.64 Aligned_cols=100 Identities=19% Similarity=0.252 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+.. .+...... ..+++.+.+.++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 899999977643311 11111000 014666678777 344 99999999
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+.+. .++++++++.++. ++.+||..||-..
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~d 122 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLD 122 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 7421 2444556676765 5667888777543
No 162
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.95 E-value=2.8e-05 Score=67.82 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=62.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHhC-CCcEEEE-eCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEK-GFPISVY-NRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~-G~~V~v~-dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
||+|+|. |.+|..++..|.++ ++++... +++.++-+.+........ ++ ....+.+++.. ..+|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 6899994 99999999999985 8887755 665443333332221100 01 00111122221 2489999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
...+++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 45556556666778999999999875
No 163
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.93 E-value=0.0001 Score=75.31 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=65.6
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH--H--HHhhcccC-CCCeeeeCCHHHHHhhcCCCc
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE--T--LDRAHREG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~--~--~~~~~~~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|.....+||+|||+|.||..+|..++..|+ +|.++|+++++... + .......+ ..++..+.+.+++ ++ +|
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aD 76 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SD 76 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CC
Confidence 333345789999999999999999999996 89999999985321 1 11100000 0135555676543 44 99
Q ss_pred EEEEecCCC----c----------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 75 SVIILVKAG----S----------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+||++.-.+ . .++++.+.+.+.. +..++|..||..
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 999977221 1 1334445555655 444777777644
No 164
>PLN00203 glutamyl-tRNA reductase
Probab=97.89 E-value=5.4e-05 Score=81.95 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|+|||+|.||..++..|...|. +|+++||++++.+.+.+...... ..+...+++.+.+.. +|+||.+++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3679999999999999999999997 69999999999988876531100 011223455555555 999999997765
Q ss_pred hH--HHHHHHHhhcc---CCCCEEEeCCC
Q 010652 85 PV--DQTIAALSEHM---SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v--~~vl~~l~~~l---~~g~iiId~st 108 (505)
++ ++.++.+.+.- ....++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 42 33334433211 12247777643
No 165
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.86 E-value=0.00012 Score=74.26 Aligned_cols=87 Identities=10% Similarity=0.222 Sum_probs=61.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|+|+|+|.||...+..+.++ ++++. +||+++ ++.. +. . +.....+.+++..+ +|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~-~-----~v~~~~d~~e~l~~---iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TE-T-----PVYAVADDEKHLDD---VDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hc-C-----CccccCCHHHhccC---CCEEEEcCCC
Confidence 46999999999999999999876 78876 579986 4322 11 1 22334566565544 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.... +.+.+.|..|.-+||...
T Consensus 71 ~th~----~~~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDI----PEQAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCH----HHHHHHHHcCCCEEECCC
Confidence 7553 444555667888888754
No 166
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.86 E-value=3e-05 Score=81.12 Aligned_cols=194 Identities=18% Similarity=0.135 Sum_probs=109.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~------~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++|+|||+|..|.+.|.||...|++|++--|. .+..+.+.+.+ +. ..+++|++.. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 68999999999999999999999999954433 33334433332 33 3678888887 99999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhh---hc--CC-ccc-CC---
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGA---RH--GP-SLM-PG--- 149 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a---~~--G~-~i~-~g--- 149 (505)
|+. .-..+.+++.|.|++|.++.-. .+.--. -......+++..+- +|=..|.... .. |. +++ +-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fs-HGFni~---~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYS-HGFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEec-CCceee---eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 997 4555668999999999877543 222100 00112233554433 4544443322 12 22 222 21
Q ss_pred -CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhh-hHhHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHH
Q 010652 150 -GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISE-AYDVLKHVGGLSNAELA 221 (505)
Q Consensus 150 -g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~i~E-a~~l~~~~g~l~~~~i~ 221 (505)
-+..+++.+...-.++|+.- .-++...- ..-...- +-..++.-+.++.+.| .|..+.+.| ++|+...
T Consensus 181 D~~g~a~~~ala~a~~iG~~r---agv~~ttf-~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G-~~pe~A~ 250 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGHR---AGVLESSF-VAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEG-TDPAYAE 250 (487)
T ss_pred CCCchHHHHHHHHHHHhCCCc---cceeecch-HHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 23346777777777777421 11221110 0000000 1223334444443333 345566667 8888764
No 167
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.86 E-value=8.5e-05 Score=67.71 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=62.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|.|..|+.+|+.|...|-+|++++++|-+.-++...+ +.. .++++++.. +|+||.++-....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 4699999999999999999999999999999998765555443 343 478888776 99999887654322
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
. .+..+.+++|.++.+.+....
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTT
T ss_pred C---HHHHHHhcCCeEEeccCcCce
Confidence 1 345566889999999877543
No 168
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.86 E-value=9.4e-05 Score=74.94 Aligned_cols=116 Identities=9% Similarity=0.121 Sum_probs=81.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|..|...++.+..- . -+|.+|||++++.+++.++.....+..+..+.++++++.. +|+|+.++++..
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 5799999999999998888763 2 3699999999999988765432101246778999999988 999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH-HHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~-~l~~~gi~~v~~ 131 (505)
++ ++ ...+++|..|.-.++-.|. .+++.. .+......|+|.
T Consensus 195 P~---~~--~~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PI---FN--RKYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTEH 236 (301)
T ss_pred cE---ec--HHHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEECC
Confidence 43 21 1346788888877776653 334433 333333456663
No 169
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.85 E-value=6.5e-05 Score=80.91 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|+|.+|.+++..|++.|++|.++||++++.+.+.+.... . ..+.+++ ..+..+|+||.|+|.+..+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCcc
Confidence 579999999999999999999999999999999988877654211 1 1122222 1234599999999998654
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +. .+++|+....+.+. +.+..+++|...++
T Consensus 405 ~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 405 PKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 321 11 38999988765543 55666777776554
No 170
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=0.00011 Score=75.40 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.+|...+..++. .+. +|.+|||++++.+++.+.........+..+.++++++.+ +|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 579999999999998887764 354 699999999999888764321100134567888988877 999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
+ ++. ..+++|..|+..++-.|...+.-...+.....-|+|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 3 333 4578999998888766543322223333322345554
No 171
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=0.0001 Score=74.74 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=79.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|...+..+.. .+. +|.+|||++++.+++.++....+ ..+. +.+.++++++ +|+|+.++|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 554 69999999999988887643211 1222 5788888887 999999999986
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
++ ++. .+++|..|.-.|+..|.. +++...+-.+.-.|+|.
T Consensus 201 Pl---~~~---~~~~g~hi~~iGs~~p~~-~El~~~~~~~a~v~vD~ 240 (304)
T PRK07340 201 PV---YPE---AARAGRLVVAVGAFTPDM-AELAPRTVRGSRLYVDD 240 (304)
T ss_pred ce---eCc---cCCCCCEEEecCCCCCCc-ccCCHHHHhhCeEEEcC
Confidence 53 332 367999998888766633 33322222222346664
No 172
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.82 E-value=0.00022 Score=72.61 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHH-HHHhhcccCCC-C-eeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDE-TLDRAHREGQL-P-LTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~-~~~~~~~~g~~-~-i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+. ..+........ . ...+.+.++ ++ .+|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~---~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK---GADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC---CCCEEEEccC
Confidence 48999999999999999999999 589999999887653 21111000000 1 112344443 33 4999999997
Q ss_pred CCc---------------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+. .++++.+.+..+-+.| +++..+|
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~g-iiiv~tN 117 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDA-ILLVVTN 117 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecC
Confidence 642 1344445666655444 4444444
No 173
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.82 E-value=8.6e-05 Score=78.70 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 7899999999988777654211 11222345555555 9999999987654
Q ss_pred HH--HHHHHHhhccCCCCEEEeCC
Q 010652 86 VD--QTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~--~vl~~l~~~l~~g~iiId~s 107 (505)
+- +.+......-..+.+++|.+
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeC
Confidence 31 22222211111234788875
No 174
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.81 E-value=0.00019 Score=70.56 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=76.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG---FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G---~~V-~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||||||+|.||..++..|.+.+ +++ .+++|++++.+++... ...+.++++++.. ++|+|+.|-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCC
Confidence 479999999999999999987642 554 4789998887777543 3578899997532 4999999987
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhh--HHHH-HHHHHHcCC-eEEcCCCCCChh
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TERR-IHEASQKGL-LYLGMGVSGGEE 138 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--t~~~-~~~l~~~gi-~~v~~pvsgg~~ 138 (505)
. .++++....++. .|.-++-.|.+-..| ..+. .+..++.|. -|+..+-.||-.
T Consensus 72 ~-~av~e~~~~iL~---~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 Q-QAIAEHAEGCLT---AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHHHh---cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 6 466666555544 454444455444433 2322 333333333 355555555543
No 175
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.80 E-value=7.8e-05 Score=77.74 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEecCCC-c
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKAG-S 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~vp~~-~ 84 (505)
.+|.|||+|.+|...+..+...|.+|+++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++.+ .
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 469999999999999999999999999999999988776554321 111 1233444544455699999997431 1
Q ss_pred hHHHHH-HHHhhccCCCCEEEeCCC
Q 010652 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iiId~st 108 (505)
....++ ++....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111122 555566788999999764
No 176
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.80 E-value=9.4e-05 Score=78.47 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||.|.+|+.+|..+...|.+|+++|+++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 5799999999999999999999999999999987754433322 22 3467888776 9999998643
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~ 110 (505)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3455 46777889999999998873
No 177
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.79 E-value=0.0002 Score=75.03 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +. ..++++++.. +|+||.++..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~-v~~leeal~~---aDVVItaTG~---- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKI---GDIFITATGN---- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CE-eCCHHHHHhc---CCEEEECCCC----
Confidence 5799999999999999999999999999999998765544332 22 2356777665 9999987654
Q ss_pred HHHHH-HHhhccCCCCEEEeCCCCCh-hhHHHHHHHH
Q 010652 87 DQTIA-ALSEHMSPGDCIIDGGNEWY-LNTERRIHEA 121 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iiId~st~~~-~~t~~~~~~l 121 (505)
..+++ .....+++|.++++.+.... -+...+.+.+
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 34453 46778899999999888654 4455555443
No 178
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.76 E-value=0.00014 Score=73.78 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=61.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+.. .......+ ..++..+.+.++ +++ ||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999999887 999999998754321 11110000 013444455554 333 9999998843
Q ss_pred Cc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. .++++++++.+.. +..++|..||-.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334456666655 556666666644
No 179
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=0.00018 Score=73.27 Aligned_cols=115 Identities=13% Similarity=0.221 Sum_probs=81.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.++...++.+..- --+|.+|||++++.+++.+.....+ ..+..+++.+++++. +|+|+.++++..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG-FAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC-CcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 5799999999999998887753 2479999999999988876432211 256778999999987 999999998875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH-HHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~-~l~~~gi~~v~~ 131 (505)
++ ++ ...+++|..|+-.|+-.|. .+++-. .+......|+|-
T Consensus 205 P~---~~--~~~l~~G~hi~~iGs~~p~-~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 205 PL---LQ--AEDIQPGTHITAVGADSPG-KQELDAELVARADKILVDS 246 (315)
T ss_pred ce---eC--HHHcCCCcEEEecCCCCcc-cccCCHHHHhhCCEEEECC
Confidence 43 31 1356789998888876653 333333 233223345664
No 180
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.76 E-value=7.8e-05 Score=79.22 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... ......+..+.+. .+|+||.+++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 579999999999999999999997 799999999998877664211 1222233444444 49999999987654
Q ss_pred HHHHHHHHhhcc----CCCCEEEeCCC
Q 010652 86 VDQTIAALSEHM----SPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l----~~g~iiId~st 108 (505)
+-. .+.+.+.+ ..+.++||.+.
T Consensus 256 ~i~-~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIG-KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEc-HHHHHHHHhhccCCCeEEEEeCC
Confidence 311 12222222 24568888863
No 181
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.75 E-value=0.00015 Score=77.08 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=54.7
Q ss_pred CcEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChhHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLAL--NV----AEKGFPISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~--~L----a~~G~~V~v~dr~~~~~~~~~~~~~~----~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||.+++. .+ +.+|++|.+||+++++.+........ .+ ..++..++++++.+++ +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998766 34 45688999999999887654432110 00 0156778888888877 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999864
No 182
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.70 E-value=0.00045 Score=59.28 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCchH
Q 010652 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~v 86 (505)
|-|+|.|.+|..++..|.+.+.+|++.|+++++++.+.+.+... +....+-.+..+ .+.+++.|+++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999998779999999999999988776321 222223333333 345689999999886433
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
..++..+....+...+++-..+. ...+.++..|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33333333333334555544332 22444555566543
No 183
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.69 E-value=0.00021 Score=73.26 Aligned_cols=96 Identities=13% Similarity=0.226 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.+|...+..|+. .+. +|.+|||++++.+++.+.........+...+++++.++. +|+|+.++|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 479999999999999999973 664 699999999999988765321100134557888888876 999999999865
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 221 12467888887766543
No 184
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.68 E-value=0.00057 Score=79.20 Aligned_cols=122 Identities=12% Similarity=0.088 Sum_probs=86.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FP-------------ISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~-------------V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l 70 (505)
+++|+|||+|.||...+..|++.. ++ |++.|+++++.+++.+...+. ..+.. ..+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 468999999999999999998763 33 899999999888776643110 01333 56778887755
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCC
Q 010652 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVS 134 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvs 134 (505)
+.+|+|+.|+|..-. ..++. ..+..|.-+++.+ ....++.++.+..++.|+.++ ++++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VAk---aAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAK---ACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHH---HHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccC
Confidence 679999999999532 33333 3345677788877 445567777788888888765 35543
No 185
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.68 E-value=0.0004 Score=69.67 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CC-----cEEEEeCChh------HHHHHHHh-hcccCC-------CCeeeeCCHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GF-----PISVYNRTTS------KVDETLDR-AHREGQ-------LPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~-----~V~v~dr~~~------~~~~~~~~-~~~~g~-------~~i~~~~s~~ 64 (505)
..||+|||.|++|+.+|+.+.++ ++ +|..|-+..+ ++.+.... ..+-.. .++.+.+++.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 35899999999999999998865 22 5776644332 22222221 111000 1678888999
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
+++.+ +|+++..+|. +.+.+++++|..+++++...|.++.+..
T Consensus 101 ea~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 101 EAAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred HHhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 98887 9999999999 6899999999999999999999887653
No 186
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.67 E-value=0.00011 Score=73.68 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+.....+ .+....+..+.+. .+|+||.++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCCC
Confidence 57999999999999999999999 689999999999888776432110 0111112223333 49999999998742
Q ss_pred HHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
-.. ...-....++++.+++|..-. |..| .+.+..+++|...+
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcCeec
Confidence 100 000011346778999999764 4444 45555667776544
No 187
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.66 E-value=0.00032 Score=72.05 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+.........+..+.++++++.+ +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 44 5799999999999988765322100134567888888877 999999999865
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ++.. ..+.+|..|...+...
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 4 2321 1256777776665533
No 188
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.66 E-value=0.00029 Score=63.12 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=76.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+..+... ....+-.-.....+.++++. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999775433333221100 00000011222333333332 5566666554321
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
... ....+.+-++||+++.. +.....+.+.+.+.++.|++++..|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445678999999887 4556667778888899999988776
No 189
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.65 E-value=0.00045 Score=68.72 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=72.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~--~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+||||||+|.||+.++..+.+. +.++. ++++.. ++....... ++..+++++++ . .++|+|+.|.|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-~--~~~DvVve~t~~ 71 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDAL-P--QRPDLVVECAGH 71 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHh-c--cCCCEEEECCCH
Confidence 6999999999999999999876 45544 445432 222221111 24667888887 3 349999999988
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCC---ChhhHHHHHHHHHHcCCe-EEcCCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~t~~~~~~l~~~gi~-~v~~pvsgg~~ 138 (505)
. ...+.... .|..|.-++..+.. ......++.+..++.|.. ++..+..|+..
T Consensus 72 ~-~~~e~~~~---aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 72 A-ALKEHVVP---ILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred H-HHHHHHHH---HHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 5 44444433 34466656655554 232344555666666654 45555555543
No 190
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.64 E-value=0.0003 Score=74.14 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +. ..+++++++. +|+||.++..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~---- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGN---- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCC----
Confidence 5799999999999999999999999999999998765544332 23 3467777765 9999988744
Q ss_pred HHHHH-HHhhccCCCCEEEeCCCCCh
Q 010652 87 DQTIA-ALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iiId~st~~~ 111 (505)
..+++ .....+++|.++++.+....
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 23453 56777899999999887643
No 191
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.64 E-value=0.00051 Score=68.98 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-++|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999988876432110 122222233333333459999999998864
Q ss_pred HHHH-HHHHh-----hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 86 VDQT-IAALS-----EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
.+.. +.... ..+.++.+++|.--.. ..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHHCCCEEE
Confidence 4321 11111 1234678899986543 333 44455566665544
No 192
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.63 E-value=0.0004 Score=65.61 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=67.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+.........+.. ..+.+++.+.++++|+||.+.|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 57999995 999999999999999999999999998877765321000001222 234444444444599999999987
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.. ..........++.+++|..-..
T Consensus 109 ~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ce---echhhhcccCceeEEEEccCCC
Confidence 53 1111222344578999985544
No 193
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.63 E-value=0.00073 Score=70.88 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=78.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGLAVMGQNLALNVAEKG-F-PISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G-~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|.|.+|+.++..|++++ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++++|+||.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887531100 1211 23444444445569999999987
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE-cCCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v-~~pvsgg~~ 138 (505)
. ....+++.. ++.|.-+||.+. ......++.+..+++|+.++ +++...|..
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5 444555443 345788999333 24455556667777788665 467776644
No 194
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.62 E-value=0.00069 Score=69.43 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCcEEEEccc-HHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGLA-VMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGlG-~mG~~lA~~La~~G~---~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~ 79 (505)
+++||||||+| .++...+..+.+.+. -|.++|+++++.+++.++. ++ ..++|++++++. .+.|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~------~~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF------GIAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEEc
Confidence 35799999998 555668888888763 3668899999988887754 23 478899999986 235999999
Q ss_pred cCCCchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+|+....+-++.. |..|+ ++++- =+....+.+++.+..+++|..+
T Consensus 75 tp~~~H~e~~~~A----L~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 75 TPNALHAELALAA----LEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred CCChhhHHHHHHH----HhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 9998665544333 44454 44441 1233456666666666665543
No 195
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.61 E-value=0.00018 Score=72.33 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|-+|++++..|+..|. +|+++||+.++.+.+.+..... ....+....+..+.+. .+|+||.++|.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 579999999999999999999998 7999999999998887542110 0001222233333344 4999999998863
Q ss_pred hHHHHHHHH-hhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 85 PVDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l-~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.-..-. .+ ...+.++.+++|..-... .| .+.+..+++|...++
T Consensus 205 ~~~~~~-~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGL-PLPAELLRPGLWVADIVYFPL-ET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCC-CCCHHHcCCCcEEEEeeeCCC-CC-HHHHHHHHCCCeEec
Confidence 110000 00 123677889999876543 34 455556677765543
No 196
>PLN02494 adenosylhomocysteinase
Probab=97.61 E-value=0.00041 Score=73.57 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|+.+|..+...|.+|+++|+++.+.......+ +.. .++++++.. +|+|+.+....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCc---
Confidence 5799999999999999999999999999999987755444333 222 367787776 99999865442
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCC-ChhhHHHHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNE-WYLNTERRI 118 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~-~~~~t~~~~ 118 (505)
.++ .+....+++|.++++.+.. ..-+...+.
T Consensus 321 -~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~ 353 (477)
T PLN02494 321 -DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLE 353 (477)
T ss_pred -cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHh
Confidence 333 5667789999999999884 333443443
No 197
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.61 E-value=0.00061 Score=69.67 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||..+|..++..| .+|.++|+++++.+...- .... .+ ..+++...+++++ ++ +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 468999999999999999999999 689999999875432111 1000 00 0134444566644 44 9999999
Q ss_pred c--CCC-------------chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 V--KAG-------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
. |.. ..++++.+.+.+.. +..++|..||-.
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 8 332 22445556666664 566777777644
No 198
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.60 E-value=0.00037 Score=69.00 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=65.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||+|+|+ |.||+.++..+.+. ++++. ++|+++++.... .. .++..+++++++++. +|+|+.+.|+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p~ 71 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTPE 71 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCHH
Confidence 68999998 99999999988864 67765 589988765443 11 135567888888765 99999888764
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHH
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIH 119 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~ 119 (505)
...+++.. .+..|.-++..+|.. +.+..++.+
T Consensus 72 -~~~~~~~~---al~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 72 -ATLENLEF---ALEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred -HHHHHHHH---HHHcCCCEEEECCCCCHHHHHHHHH
Confidence 34444433 344566666555554 333333444
No 199
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.60 E-value=0.00073 Score=74.47 Aligned_cols=116 Identities=18% Similarity=0.319 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.+|-|+|+|.+|+.+++.|.++|++|++.|.|+++++++.+.+.. -+....+-++..+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 579999999999999999999999999999999999988765432 1333334445544 3457999999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
....++..+....+.-.++.-. + .+ +..+.+++.|++++=.|
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~-~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARA-H-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEE-C-CH----HHHHHHHHcCCCEEECh
Confidence 5444444444433333444433 2 22 33334455677766544
No 200
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00038 Score=70.99 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=84.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++|||+|.++......+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.++|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34799999999999988865433221136788999999998 999999999976
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+ ++. ...+++|..|.-.++-.|.-.+--.+.+...+.-|+|.+
T Consensus 208 P---il~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 P---VLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred C---eec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 3 221 245678998888877655443333333343346677754
No 201
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.55 E-value=0.00084 Score=68.24 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=64.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccC---CCCee-eeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREG---QLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~g---~~~i~-~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|..+|..|+.+| ++|.++|+++++.+.........- ..+.. ...+.++ +.+ +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 37999999999999999999999 689999999988765543211000 00112 2234444 333 99999998
Q ss_pred CCCc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..+. .++++.+.+.++. +..++|..||-
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 6531 1344445666654 45577777653
No 202
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.55 E-value=0.00045 Score=72.17 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||.-.|.+|+++| .+|++.||+.++..++.++... .. .+++++...+..+|+||.++.++.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~----~~---~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA----EA---VALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC----ee---ecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 5799999999999998876431 12 344554444445999999986654
Q ss_pred hH--HHHHHHHhhccCCCCEEEeCCC
Q 010652 85 PV--DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v--~~vl~~l~~~l~~g~iiId~st 108 (505)
++ +..++..... ++.-++||.+.
T Consensus 251 ~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHhc-ccCeEEEEecC
Confidence 43 1222222221 12247888754
No 203
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.54 E-value=0.001 Score=68.49 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=77.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..||||||+ .||...+..+.+. ++++. ++|+++++.+++.++. ++..+++.+|++++ .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 468999999 6899999999875 46655 7899999998887653 35578999999976 8888888864
Q ss_pred C---chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 G---SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~---~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
. ..-.++.. ..++.|.-|+----....+.+++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e~a~---~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALAR---ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHHH---HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 11122222 23445654444333335777777777778887665
No 204
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.53 E-value=0.001 Score=73.80 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.++++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCH
Confidence 3579999999999999999999999999999999999988765432 1333445555554 346799999999997
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+....++..+....+.-.+++-..+ +...+.+.+.|+..+
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEE
Confidence 6555555554444333345543322 133445566677655
No 205
>PRK06046 alanine dehydrogenase; Validated
Probab=97.52 E-value=0.0005 Score=70.52 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~-G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|||||+|.+|...+..+... +. .|.+|||++++.+++.+.........+..+.+.+++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 5799999999999999999843 33 68899999999888876532110012556788888874 899999999875
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
++ ++ ...+++|..|...++..|. .+++...+-.+.-.|+|-
T Consensus 206 P~---~~--~~~l~~g~hV~~iGs~~p~-~~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 206 PV---VK--AEWIKEGTHINAIGADAPG-KQELDPEILLRAKVVVDD 246 (326)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCCc-cccCCHHHHhCCcEEECC
Confidence 43 21 1346789988888776653 233332222223345664
No 206
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.51 E-value=0.00099 Score=66.32 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=67.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hhHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRT-TSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~-~G~~V~-v~dr~-~~~~~-~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+| +|.||+.++..+.+ .++++. ++||+ +++.. .+.+..... ..++..+++++++.. .+|+||.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 6899999 69999999999986 577765 57854 32211 111110000 013566788888833 3899999987
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHcCCeEE
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~gi~~v 129 (505)
+. ...+.+. ..+..|.-++..++.. +....++.+..++.|+.++
T Consensus 78 p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 78 PE-GVLNHLK---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred hH-HHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEE
Confidence 63 4444433 3445666566555544 3334444444445455444
No 207
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.51 E-value=0.0015 Score=72.77 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=79.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
..+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.++++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDP 475 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence 3579999999999999999999999999999999999988775432 1333444455554 456899999999887
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
+....++..+....+.-.+++-..+ .+....+.+.|+..+...
T Consensus 476 ~~n~~i~~~ar~~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e 518 (621)
T PRK03562 476 QTSLQLVELVKEHFPHLQIIARARD------VDHYIRLRQAGVEKPERE 518 (621)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECC------HHHHHHHHHCCCCEEehh
Confidence 6555444444443333345443322 133445666787766433
No 208
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.49 E-value=0.0006 Score=71.75 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +.. .+.++.+.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999999877666543 222 245666655 99999987543
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~ 109 (505)
.++ ......+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 344 3457788999999998854
No 209
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.48 E-value=0.0004 Score=70.80 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=65.4
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+..-+..+.. .+ -+|.+|||++++.+++.+..... ...+..+++++++++. +|+|+.++|...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999999888765 33 37999999999999888765431 2367889999999998 999999999876
Q ss_pred --hHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 85 --PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 --~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
++ ++ ...+++|..|+..++-.|.
T Consensus 205 ~~P~---~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PAPV---FD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EEES---B---GGGS-TT-EEEE-S-SSTT
T ss_pred CCcc---cc--HHHcCCCcEEEEecCCCCc
Confidence 42 21 2467899999888876653
No 210
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.47 E-value=0.00024 Score=61.56 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=72.4
Q ss_pred CcEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAG----LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIG----lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|+||| -+.+|..+..+|.++||+|+..|...+.+ . +...+.+++|.-.. .|++++++|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------~---G~~~y~sl~e~p~~---iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------L---GIKCYPSLAEIPEP---IDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------T---TEE-BSSGGGCSST----SEEEE-S-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------C---cEEeeccccCCCCC---CCEEEEEcCH
Confidence 3699999 68999999999999999999998765321 1 46778899883233 8999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
..+.++++++... ..+.+++..+ ...++..+.+++.|+.+++..
T Consensus 66 -~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 66 -DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred -HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 4678888888764 4567777776 345566777788899988643
No 211
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.46 E-value=0.0013 Score=59.08 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhh----cccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~----~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++...... .... .+........+.+++ +|+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~~---aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-SPVRITSGDYEALKD---ADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-EEEEEEESSGGGGTT---ESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-ccccccccccccccc---ccEEEEe
Confidence 58999999 9999999999999875 7999999987654433211 0000 012222233333343 9999998
Q ss_pred cCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.-.+ . .++++.+.+.++- +..+++-.||-
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 7332 1 2344445566655 55677777664
No 212
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.42 E-value=0.0063 Score=58.71 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=102.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh----------hHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT----------SKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~----------~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~ 72 (505)
.++|+|.|+|++|+.+|..|.+.|.. |.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 46899999999999999999999885 55779887 6655544432211 1100 112234433 2 5
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCChhhhhcCCcccCCCCH
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSF 152 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg~~~a~~G~~i~~gg~~ 152 (505)
+|+++-|.+.+....+.... + .=++|+...|.... .+..+.|.++|+.++.--+.. .||--
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd~~~N------------aGGvi 158 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPDIVAN------------AGGVI 158 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEEChHHhc------------CCCeE
Confidence 89999998876333322232 3 24678877776533 367788899998776422211 11110
Q ss_pred -HHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010652 153 -EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 153 -e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~ 224 (505)
..++..+. . ...+|- -.-+.+.+...+.....+.+..+++.+ +++.+...++
T Consensus 159 ~s~~E~~q~----~-------~~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 159 VSYFEWVQN----L-------QRLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred eEHHHhcCC----c-------cccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 11111110 0 111111 123444555566777788888889888 8887766553
No 213
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00097 Score=68.73 Aligned_cols=117 Identities=10% Similarity=0.112 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...++.+.. .--+|.+|||++++.+++.+..... ..++..++++++++++ +|+|+.++++..
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 579999999999888776654 2347999999999998887654321 1246778999999998 999999998643
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
. ..+++. ..+++|..|.-.++-.| +.+++-..+-.+.-.|+|.
T Consensus 206 ~-~Pvl~~--~~lkpG~hV~aIGs~~p-~~~Eld~~~l~~a~v~vD~ 248 (346)
T PRK07589 206 N-ATILTD--DMVEPGMHINAVGGDCP-GKTELHPDILRRARVFVEY 248 (346)
T ss_pred C-CceecH--HHcCCCcEEEecCCCCC-CcccCCHHHHhcCEEEECC
Confidence 1 112221 35678988877776554 3334332222222345663
No 214
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.39 E-value=0.00063 Score=62.90 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=56.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.| |..+|.+|.++|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~i 100 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPGL 100 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCce
Confidence 68999999997 88899999999999999998742 22334444 9999999998642
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. .+ .++++.+|||.+...
T Consensus 101 i~---~~---~~~~~~viIDla~pr 119 (168)
T cd01080 101 VK---GD---MVKPGAVVIDVGINR 119 (168)
T ss_pred ec---HH---HccCCeEEEEccCCC
Confidence 11 22 356789999997654
No 215
>PRK11579 putative oxidoreductase; Provisional
Probab=97.39 E-value=0.0025 Score=65.90 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=70.8
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~-lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.+|||||+|.+|.. .+..+... +.++. ++|+++++.. +... ....+++++++++. .+.|+|++++|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 469999999999985 55666553 67765 7899987643 1110 24567899999874 247999999999
Q ss_pred CchHHHHHHHHhhccCCCC-EEEeC-CCCChhhHHHHHHHHHHcCCeE
Q 010652 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.++.. +..|+ ++++- -.....+.+++.+..+++|+.+
T Consensus 75 ~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 7554433333 34455 44442 1223455666666666666654
No 216
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.0027 Score=64.20 Aligned_cols=124 Identities=11% Similarity=0.125 Sum_probs=87.6
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHh---CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAE---KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~---~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|++++.-++||+|+|.|+.-++++|.- .+|.|+ ++||+.++..++.+...-. +.+.+.|.+|++++ ...|+|
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvV 76 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVV 76 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEE
Confidence 566666789999999999999999863 467755 7799999988888764321 35778999999987 235999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeC-CCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.+..|.+...+ ++--++.. ...++++- -.......+++.+.++.+|+.|++.
T Consensus 77 yi~~~~~qH~e-vv~l~l~~--~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 77 YISTPNPQHYE-VVMLALNK--GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred EeCCCCccHHH-HHHHHHHc--CCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 99999976544 33222222 12355553 1234456777888888899887763
No 217
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.38 E-value=0.00083 Score=66.72 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=65.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhc---ccC-CCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 9 IGLAGL-AVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAH---REG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G----~~V~v~dr~~~~~~~~~~~~~---~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+|||+ |.||..++..|+..| .+|.++|+++++++....... ... ..+++.++++.+.+++ +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 789999999876544332110 000 0146666776676666 9999996
Q ss_pred cCCC---------------chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-.+ +.++++.+.+.... +..++|..||-.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 5221 12444445665555 666777776644
No 218
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.38 E-value=0.00069 Score=59.02 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=59.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCC-c-EEEEeCChhHHHHHHHhhcc-cCCCCeeeeC-CHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGF-P-ISVYNRTTSKVDETLDRAHR-EGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~-~-V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||+||| .|.+|..|.+.|+++-+ + +.++.++++.-..+...... .+...+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 89999999999998643 4 45667776222222221110 0000123333 44444 44 9999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 455555555 45788999999876
No 219
>PRK04148 hypothetical protein; Provisional
Probab=97.37 E-value=0.0013 Score=58.26 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|..||+| -|..+|..|++.|++|++.|.++..++.+.+.+... ..-..++..-++-++ +|+|...=|+. .+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-el 90 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-DL 90 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-HH
Confidence 579999999 999999999999999999999999988877654211 000112233355565 99999888885 56
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
..-+-+++......-+|...|+..|.
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 66667788878777777777776543
No 220
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.33 E-value=0.0029 Score=64.52 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=61.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccC-C-CCeee-eCCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-Q-LPLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g-~-~~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
..+||+|||+|.+|.++|..|+..|. ++.++|++.++++.......... . .+... ..+.++ .++ +|+||++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIit 80 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVIT 80 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEEe
Confidence 34699999999999999999999998 79999999876543332111000 0 01222 344444 344 9999997
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.-.+. .++++++.+..+- +..+++..||
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsN 123 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASN 123 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 64321 1334445555544 4556666665
No 221
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.32 E-value=0.0021 Score=68.72 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhh-cCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS-IQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~-l~~advIil~vp~~~ 84 (505)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+... .+...+.+. ++++|.|++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 4799999999999999999999999999999999988876521100 01111 233323222 45699999999885
Q ss_pred hHHHHHHHHhhcc-CCCCEEEeCCC
Q 010652 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iiId~st 108 (505)
.....+......+ +...+|+...+
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444443344433 44556665433
No 222
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.32 E-value=0.00047 Score=72.83 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=55.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||+|-||..++.+|+..|. +++++||++++.+.+.+..... .....+++.+.+. .+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCCe
Confidence 579999999999999999999996 6999999999988887653200 1222334444444 49999999988754
Q ss_pred H
Q 010652 86 V 86 (505)
Q Consensus 86 v 86 (505)
+
T Consensus 256 v 256 (414)
T PRK13940 256 I 256 (414)
T ss_pred e
Confidence 3
No 223
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.001 Score=63.26 Aligned_cols=190 Identities=12% Similarity=0.127 Sum_probs=109.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+.+|+||.|..|.....+....++... +..|++++.+.+.+.- ...+.++....+..+++|.-+|+.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~- 78 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA- 78 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH-
Confidence 4679999999999997666666666655 3478888877654421 223333333322257788887774
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe---EEc-CCCCCChhhhhcCC-cccC--CCCHHHHHH
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLG-MGVSGGEEGARHGP-SLMP--GGSFEAYNN 157 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~---~v~-~pvsgg~~~a~~G~-~i~~--gg~~e~~~~ 157 (505)
.+-.+... ..-.+|+++++||...-. .+.+.+...|.. +-. +-.+|.++....-+ .++. -+|+-.+..
T Consensus 79 ~~s~vaa~--~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai 153 (289)
T COG5495 79 LYSGVAAT--SLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAI 153 (289)
T ss_pred HHHHHHHh--cccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHH
Confidence 23333222 224589999999887543 334444444432 211 23566666655333 3332 467777888
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010652 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
++.+...+|.+ .+-+-+.-...| -...|--..-...++.|+..+.+..| .|.-+
T Consensus 154 ~q~la~emgg~------~f~V~~~~r~lY-Haaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 154 VQSLALEMGGE------PFCVREEARILY-HAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHhCCC------ceeechhHHHHH-HHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 99999999954 333322111100 01111111124567789999999888 87443
No 224
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.28 E-value=0.0031 Score=64.21 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=63.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.+|.++|..|+..|. ++.++|+++++++......... ...++..+.+++++ ++ +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 4699999999999999999998886 6999999887653322111000 00034545677764 43 9999997
Q ss_pred cCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.-.. . .++++.+.+..+ .+..++|..||-
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 6321 1 133344555555 456677777753
No 225
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0013 Score=65.47 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=75.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEec--CC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~v--p~ 82 (505)
..||.|||-|.+|.+-|+....-|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|++|-+| |.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 3589999999999999999999999999999999998776554221 22 34566666666677799999776 44
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.++-+-+.+++...+.+|.+|||..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 4444556688888899999998863
No 226
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.24 E-value=0.0018 Score=64.90 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=84.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+.+||+|+|.+|+.+|.++..-|-.|..||.-... +...+. +++ ..+++|+... +|+|-+-+|-.++.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999999754321 122222 233 4588888887 99999999998888
Q ss_pred HHHH-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHH
Q 010652 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~ 123 (505)
+.++ ++....+++|-.||+++.+-.-|+..+.+.+.+
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566777899999999999988899888887765
No 227
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.24 E-value=0.001 Score=68.66 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+||+|||+ |.+|..+++.|.++ ++++. +.++. +.-+.+.+..............+.++. ...++|+|++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 479999996 99999999999987 67765 45643 222222211110000000112333332 12349999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
+ ...++...+. ..|..|||.|+.+--
T Consensus 79 ~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 79 G-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred H-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 6 4444544443 368999999987744
No 228
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.23 E-value=0.013 Score=50.93 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHH-HHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~-~~~~~~~~~~ll~~~ 404 (505)
|+++-.|.++|-+.++.+...+|++.+-++. ++|.+++.++-+.| --.|+.++.... .+.+.+.. +
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------~ 67 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------P 67 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC------S
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC------c
Confidence 3567789999999999999999999998853 39999999999887 457888876544 23222211 2
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFD 442 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~ 442 (505)
.|. ++-...+++-++..|-+.|+|+|..+.+..+|.
T Consensus 68 ~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 68 GFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred cch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 222 234456778899999999999999999988775
No 229
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.22 E-value=0.0031 Score=63.93 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=62.2
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~G--~~V~v~dr~~~~~~~~~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.+|.++|..|+..| .+++++|+++++++......... ....+..+.+.++ ++ .+|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~-l~---~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD-AA---DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH-hC---CCCEEEEcCCC
Confidence 689999999999999999999 68999999998765544321110 0002333344443 33 39999999864
Q ss_pred Cc---------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+. .++++.+.+..+. +..++|..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1344445555555 56667777653
No 230
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.20 E-value=0.0028 Score=61.56 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCC
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr----------~~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l~~ 72 (505)
+.++|+|.|+|.+|+.++..|.+.|.+|+ +.|. +.+.+.+..+....-..+ ... .-+++++... +
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~-~~~~~~i~~~--~ 106 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAE-RITNEELLEL--D 106 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCce-ecCCccceee--c
Confidence 34689999999999999999999999988 6687 666665554432110000 001 1133444432 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+|+++-|.+.+....+.+..+. =.+|+...|... +.+..+.|.++|+.|+.
T Consensus 107 ~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~P 157 (227)
T cd01076 107 CDILIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVP 157 (227)
T ss_pred ccEEEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEEC
Confidence 8999999887654444444432 467888888765 36777889999998875
No 231
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.20 E-value=0.003 Score=65.20 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC----------CCcEE-EEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK----------GFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~----------G~~V~-v~dr~----------~~~~~~~~~~~~~~g~~-~i~~~~s~ 63 (505)
..+|+|+|+|.||+.++..|.++ +.+|. ++|++ .++...+.+.......+ ......++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999999865 35544 66853 33333333221100000 01123478
Q ss_pred HHHHhhcCCCcEEEEecCCCchH-HHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEE-cCCCCCCh
Q 010652 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v-~~pvsgg~ 137 (505)
+++++. ..+|+|+.++|+.... +...+-+...+..|.-||-.+..... ...++.+..+++|..|. .+.+.+|-
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 888764 2489999999874321 11223344556678877765432211 23445555556677654 45554443
No 232
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.18 E-value=0.0018 Score=67.78 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChhHHHHHHHhhccc-CCC-CeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--G-FPISVYNRTTSKVDETLDRAHRE-GQL-PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G-~~V~v~dr~~~~~~~~~~~~~~~-g~~-~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+++|||+|.++......++.- . -+|.+|||++++.+++.+..... ++. .+..++++++++++ +|+|+.|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 5799999999999999988763 2 37999999999998887654321 001 26778999999988 999999997
Q ss_pred CCch---HHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AGSP---VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~---v~~vl~~l~~~l~~g~iiId~st 108 (505)
.... ...+++ ...+++|..|+-.+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112221 134678887764433
No 233
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.16 E-value=0.0032 Score=59.94 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=31.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT 38 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~ 38 (505)
..+|+|+|+|.||..+|.+|++.|+ +|+++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999999 69999998
No 234
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.15 E-value=0.002 Score=59.58 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=53.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|||+ |..|..++.-..+.||+|+.+-||++|+..+....... .. ..+++.+.+.|.+-|+||.+.-.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 68999996 99999999999999999999999999976542111110 01 235555556666789999998554
No 235
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.14 E-value=0.00063 Score=62.88 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--------------------eCCHHH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--------------------HYTPRD 65 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--------------------~~s~~e 65 (505)
..+|.|+|.|+.|..-+..+...|++|+++|.++++.+++...... .+.. ......
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3689999999999999999999999999999999888776654332 1222 111112
Q ss_pred HHhhcCCCcEEEEec--CCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 66 FVLSIQRPRSVIILV--KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 66 ~v~~l~~advIil~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+.++.+|+||.++ +....-.-+-++.+..+.++.+|+|.|-
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 333333489999744 3332222222667777889999999875
No 236
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.13 E-value=0.0022 Score=65.31 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=61.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--hHHHHHH----HhhcccC-CCCeeeeCCHHHHHhhcCCCcEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFP--ISVYNRTT--SKVDETL----DRAHREG-QLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~--V~v~dr~~--~~~~~~~----~~~~~~g-~~~i~~~~s~~e~v~~l~~advI 76 (505)
|||+|+|+ |.+|..++..|+..|+. |+++||++ ++++... +.....+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999998 99999999999999975 99999965 4332111 1000000 002344445544 444 9999
Q ss_pred EEecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 77 IILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
|+++..+. .++++.+.+.+..+ ..+||-.+|..+.-+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHH
Confidence 99985321 13444455666554 445555555443333
No 237
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.11 E-value=0.0047 Score=62.23 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHH-HHHHhhcccCCCCeee-eCCHHHHHhh--cCCCcEEEEe
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTG-HYTPRDFVLS--IQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~-~~~~~~~~~g~~~i~~-~~s~~e~v~~--l~~advIil~ 79 (505)
+.||||||+|.+|..++..+.+. +.++. ++|+++++.. +..++. ++.. +.+.+++++. +++.|+|+.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888764 55655 6799886432 222211 2333 4788998863 3458999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|+. ...+....+ ++.|..+||.+...
T Consensus 78 T~a~-~H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAG-AHVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCHH-HHHHHHHHH---HHcCCeEEECCccc
Confidence 9885 333333333 45789999988765
No 238
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0054 Score=59.52 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=93.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHH-HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~----~V~v~dr~~~~~~~-~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|||||.|.|...++..+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 579999999999999999999986 45555442222222 2222 23444444777776 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc-CCCCCChhhhhcCCcccCCC---CHHHHHH
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~-~pvsgg~~~a~~G~~i~~gg---~~e~~~~ 157 (505)
+ ..+..++.++.+.+..+++|+.+--+..-.+ +...+.. ..+++- +| -.+.....|.+++.-| ..+..+.
T Consensus 71 p-~~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~~-~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 P-QVIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLSP-PTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred c-hhHHHHhhcCccccccceEEEEEeecccHHH--HHHhcCC-CCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHH
Confidence 8 4788898888887888999998766653332 3333331 122222 12 1233444555444333 4455688
Q ss_pred HHHHHHHhhc
Q 010652 158 IRDILQKVAA 167 (505)
Q Consensus 158 v~~ll~~iga 167 (505)
++.++..+|-
T Consensus 145 ~~~ll~~vG~ 154 (267)
T KOG3124|consen 145 VEELLSAVGL 154 (267)
T ss_pred HHHHHHhcCc
Confidence 8899999983
No 239
>PRK15076 alpha-galactosidase; Provisional
Probab=97.06 E-value=0.0029 Score=67.36 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=51.7
Q ss_pred CcEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVMGQNLAL--NVA----EKGFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~--~La----~~G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||...+. .++ -.|.+|.++|+++++.+.... .... .+ ..++..+++..+.+++ +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999977665 554 235689999999988653221 1100 00 1246777887777776 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||+++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998775
No 240
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.06 E-value=0.008 Score=64.25 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eee-CCHHHHH-hhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGH-YTPRDFV-LSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~-~s~~e~v-~~l~~advIil~vp~ 82 (505)
+++|-|+|+|.+|..++..|.+.|++|++.|+++++.+++.+.+... .+ ... .+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 46799999999999999999999999999999999988887653110 11 111 2333331 234579999988887
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
. ...-.+..++..+....+|+-..+... ...+...|+.++
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~g~~~v 347 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPAY------VDLVEGLGIDIA 347 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcch------HHHHHhcCCCEE
Confidence 5 334334444455555666665544322 233455576655
No 241
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.05 E-value=0.0027 Score=68.39 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc--------C--CCCeeeeCCHH-------HHHhh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--------G--QLPLTGHYTPR-------DFVLS 69 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~--------g--~~~i~~~~s~~-------e~v~~ 69 (505)
.++.|+|+|.+|...+..+...|..|+++|+++++.+.+...+... | .-+.....+.+ .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999877766543220 0 00000000101 02333
Q ss_pred cCCCcEEEEec-----CCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 70 IQRPRSVIILV-----KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 70 l~~advIil~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++|+||.++ |.+ +-+.++....+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 45689998887 433 11335667778888888888763
No 242
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.01 E-value=0.0022 Score=66.33 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=61.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcc-cCCCCeee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHR-EGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~~~-~g~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+|+ |.+|..+++.|.++ ++++. +++++...-+.+.+.... .+...... ..+.+++.++ +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 66777 556554221212211110 00000111 1255566544 999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ...++...+. ..|..|||.|+.+-
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhhh
Confidence 97 4455544443 46899999998763
No 243
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.99 E-value=0.0046 Score=57.21 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=52.8
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecCCC
Q 010652 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|.|+|. |.+|..++..|.+.|++|++.-|++++.+. ..+. .+.. ..+++.+.+.++++|.|+.+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998776 2211 1111 245666666677799999999754
No 244
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.99 E-value=0.0037 Score=65.54 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cC-C--C----Ceeee--CCHHHHHhhcCC
Q 010652 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTSKVDETLDRAHR----EG-Q--L----PLTGH--YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIGlG~mG~~l-A~~La~~G~~V~v~dr~~~~~~~~~~~~~~----~g-~--~----~i~~~--~s~~e~v~~l~~ 72 (505)
|||.++|+|.||+++ ...|.+.|++|++.|++++.++.+.+++.- .+ . . ++... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999865 788889999999999999999988877521 01 0 0 11122 133555555556
Q ss_pred CcEEEEecCCCchHHHHHHHHhhcc--------CCCCEEEeCCCCCh
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHM--------SPGDCIIDGGNEWY 111 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l--------~~g~iiId~st~~~ 111 (505)
+|+|.++|... ..+.+...|.+.| .++-+|+.|=|...
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ 126 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIR 126 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhh
Confidence 89999999764 4566665555544 23337888877653
No 245
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=96.98 E-value=0.0056 Score=51.14 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=60.4
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhhHhhhhhhcccccccCCchhHHHHHhh
Q 010652 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (505)
.++++|++.|++.+..+++++|...+|++.| +|..++.+.+. ... ... ...+...-.+++..+-. |
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d~---ri~---~~~~~pg~g~GG~Clpk----D 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TDP---RIG---PHYLRPGPGFGGSCLPK----D 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TST---TTT---SSS-S-SSS--SSCHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cCc---ccc---cccCCCCCCCCCcchhh----h
Confidence 5789999999999999999999999999998 99999998873 211 000 11222222244444333 3
Q ss_pred hCCCccHHHHHHHHHHcCCCcchhHHHH
Q 010652 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~A~ 290 (505)
.. .....+.++|.+.+++.+++
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~~ 90 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAVI 90 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHHH
Confidence 21 45678999999988777653
No 246
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.97 E-value=0.0054 Score=59.56 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=68.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hhHH-------HHHHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRT----TSKV-------DETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~---V~v~dr~----~~~~-------~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
.+|.|+|+|.+|..+|..|.+.|.+ |+++||+ .++. ..+.+..... ....++.+.++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-----~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-----KTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-----cccCCHHHHHhc---
Confidence 5899999999999999999999975 9999999 4443 2222221000 111356566665
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+|++|-+.|.+-...++++ .+.++.+|++.+|-.+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986643333333 3446788889885432 2234444445554
No 247
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.93 E-value=0.0079 Score=60.29 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHH-HHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVD-ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~-v~dr~~~~~~-~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|||||+|.+|..++..+.+ .++++. ++|+++++.. ++.+.. ++ ..+.+.+++++. .+.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 589999999999999888875 456765 6799887533 222221 22 345688888864 347889999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
... .+.. ...++.|..++|.+...
T Consensus 75 ~~H-~e~a---~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAH-ARHA---RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHH-HHHH---HHHHHcCCEEEECCccc
Confidence 643 2232 23355789999987654
No 248
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.90 E-value=0.0079 Score=62.06 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhh-cc-----------cCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA-HR-----------EGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~~~-~~-----------~g~~~i~~~~s~~e~v~~l~ 71 (505)
|+||||+|+|.||+.++..+.++ +++|. ++|++++....+.... .. .++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36899999999999999998864 56765 5677766555444321 00 000024455566666654
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+|+|+.|.|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 888888887753 333332 234456777776664
No 249
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.90 E-value=0.0049 Score=50.26 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=47.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 35899999999999999999998 567888886 57777777665
Q ss_pred hHHHHHHHHhhccCCCCEEEeCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~s 107 (505)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 4432 2334456778888763
No 250
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.87 E-value=0.0052 Score=65.36 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--------G--FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--------G--~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+.+|||+|+|.||..++..|.++ | .+ +.++||++++.+.+. . . ....++++++++++ ...|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~---~---~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-L---P---GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-C---c---ccceeCCHHHHhhC-CCCC
Confidence 46899999999999999888654 3 34 447799977643211 0 0 23567899999864 2369
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC-ChhhHHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
+|+.+++......+ -+...|..|.-|+..... ......++.+..+++|+.| +.+.+.||
T Consensus 75 vVve~tg~~~~~~~---~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPARE---LILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHH---HHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 99999876433333 333556678777743321 1122344455555667754 34445444
No 251
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.85 E-value=0.011 Score=63.58 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-----HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-----~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTPS 86 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECCC
Confidence 5799999999999999999999999999998753 1233433321 12222222333344 89988863
Q ss_pred -CC-CchHHHHHH---------HHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 -KA-GSPVDQTIA---------ALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~-~~~v~~vl~---------~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|. .+.+....+ +++ .......|-|.+|++...++.-+...+...|...
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 11 112222211 111 2222234556666666655555566677666543
No 252
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.0046 Score=61.88 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=58.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|. +|.++|..|.+.|.+|+++++... ++++.+.+ +|+||.+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5799999987 999999999999999999986421 34445555 9999999988643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 322 2467899999998753
No 253
>PRK10206 putative oxidoreductase; Provisional
Probab=96.81 E-value=0.013 Score=60.67 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHH-HHHHHHHh--CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQ-NLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~-~lA~~La~--~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.||||||+|.++. ..+..+.. .+++|. ++|+++++. ++.+... .+..+++.+++++. .+.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 33454533 357765 789997654 4333211 24567899999974 347999999999
Q ss_pred CchHHHHHHHHhhccCCC-CEEEeC-CCCChhhHHHHHHHHHHcCCeEE
Q 010652 83 GSPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~t~~~~~~l~~~gi~~v 129 (505)
....+.++..+ ..| .++++- =.....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 75 DSHFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred hHHHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 76554443333 334 455552 12234566777777777776543
No 254
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.81 E-value=0.0016 Score=54.33 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVA-EKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La-~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..++.|+|+|..|..++.++. ..|+. +.++|.++++..+-. . ++....+.+++.+.+ ++|+.+++||+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-----~---gipV~~~~~~l~~~~-~i~iaii~VP~~ 73 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-----G---GIPVYGSMDELEEFI-EIDIAIITVPAE 73 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-----T---TEEEESSHHHHHHHC-TTSEEEEES-HH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-----C---CEEeeccHHHhhhhh-CCCEEEEEcCHH
Confidence 357999999999999986544 56877 457899998643211 1 467777999998877 599999999984
Q ss_pred chHHHHHHHHhh
Q 010652 84 SPVDQTIAALSE 95 (505)
Q Consensus 84 ~~v~~vl~~l~~ 95 (505)
.+.++++++..
T Consensus 74 -~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 -AAQEVADELVE 84 (96)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 67777777666
No 255
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0041 Score=62.11 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=58.9
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.. |.++|..|.+.|..|++++.. +.++++.++. +|+||.+++....
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999777 999999999999999997532 1356666666 9999999997653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+.+|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 332 5688999999998764
No 256
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.76 E-value=0.0089 Score=64.65 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999887776554
No 257
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0065 Score=60.79 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. +..+|+||-++|.+-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999998886543221 0001112221111 0128999999998854
Q ss_pred HHH---HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~---vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
-.. .+. ...+.++.++.|.--... .| ...+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEEC
Confidence 321 122 345778999999865443 33 455556777766554
No 258
>PLN02602 lactate dehydrogenase
Probab=96.72 E-value=0.017 Score=59.67 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=61.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++..... ....+..++....+.++ +++ ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 599999999999999999998886 699999998765432211 10000012333345555 333 99999985
Q ss_pred CCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
-.+ . .++++.+.+..+ .+..++|..||-
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNP 156 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNP 156 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 321 1 123333455554 356677777753
No 259
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.72 E-value=0.067 Score=52.49 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=98.0
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc---CC
Q 010652 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG---MG 132 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~---~p 132 (505)
++...++-.|+++. +|++|+-+|-|...-.+++.+++++++|.+|.++.|.++.......+.+.++.+.... +.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56667777788877 9999999999987778889999999999999999999888777777666655444333 23
Q ss_pred CCCChhhhhcCCcccCC--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010652 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 133 vsgg~~~a~~G~~i~~g--g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
|-|.+ |..+..- .++|..+++-++.++.+ +..+.+-..-.+...-|. ..+.+...+.+.+=+....
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~------k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR------GNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 33333 4433322 38889999999999998 566665443333343443 2233334455555555555
Q ss_pred HhCCCC
Q 010652 211 HVGGLS 216 (505)
Q Consensus 211 ~~g~l~ 216 (505)
+..|.+
T Consensus 273 qIlgAP 278 (342)
T PRK00961 273 QILGAP 278 (342)
T ss_pred HHhcCc
Confidence 554333
No 260
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.72 E-value=0.0084 Score=63.60 Aligned_cols=123 Identities=17% Similarity=0.038 Sum_probs=75.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec-
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
.+||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...+. .+..-..+.+... .+|+|+.+=
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i-----~~~~g~~~~~~~~---~~d~vV~SPG 78 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGI-----EVELGSHDDEDLA---EFDLVVKSPG 78 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCc-----eeecCccchhccc---cCCEEEECCC
Confidence 5789999999999999999999999999999776551 11111111 0111111112333 389998853
Q ss_pred -CCC-chHHHHHH---------HHhhcc--CCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 81 -KAG-SPVDQTIA---------ALSEHM--SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 81 -p~~-~~v~~vl~---------~l~~~l--~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
|.. ..++.... ++.... +..-+-|.+||+...+|.-+...+++.|....-++-.|.
T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~ 147 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT 147 (448)
T ss_pred CCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCc
Confidence 222 22333321 222222 233567778888887787778888888876555554444
No 261
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.69 E-value=0.017 Score=61.34 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++......... . ....+.+.+..+ +|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIH--E-----RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHh--h-----hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 5799999999999999999999999999998876433211000 0 011233333344 888888764432
Q ss_pred -hHHHHHH---------HH-hhc--c-CCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 85 -PVDQTIA---------AL-SEH--M-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 -~v~~vl~---------~l-~~~--l-~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+++..+ .+ ... . ....|-|.+|++...++.-+...+...|.
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 1222221 11 111 1 22346677777776666666777776664
No 262
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.68 E-value=0.008 Score=64.37 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=73.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGL----AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGl----G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||. |.+|..+.++|.+.|| +|+..|...+.+ . ++..+.+++|+-+. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---------~---G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---------L---GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---------C---CccccCCHHHCCCC---CCEEEEec
Confidence 57999999 8899999999999999 465555543211 1 35677889888665 89999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChh-------hHHHHHHHHHHcCCeEEcC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-------NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-------~t~~~~~~l~~~gi~~v~~ 131 (505)
|.. .+.++++++... ....+||- +....+ ..+++.+..++.|+++++.
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 985 677888877664 23344443 222222 2244555666778887764
No 263
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.024 Score=60.68 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++....| ..+.......+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-IELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CEEEeCCcchhHhhc---CCEEEECCC
Confidence 3689999999999999999999999999999985 33332222111110 122223333444444 899998763
No 264
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.65 E-value=0.01 Score=60.70 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------CCcE-EEEeCChhH-------HHHHHHhhcccCCCCeeeeC--CHHHHHh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--------GFPI-SVYNRTTSK-------VDETLDRAHREGQLPLTGHY--TPRDFVL 68 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--------G~~V-~v~dr~~~~-------~~~~~~~~~~~g~~~i~~~~--s~~e~v~ 68 (505)
|+|+|+|+|.+|+.++..|.++ +++| .+.|++... ++++.+.... |.+...... +++++.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999874 3453 466876432 1222211110 000001112 5666654
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhh-HHHHHHHHHHcCCeE-EcCCCCCChh
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLY-LGMGVSGGEE 138 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-t~~~~~~l~~~gi~~-v~~pvsgg~~ 138 (505)
..+|++|.|.|....-......+.+.|..|.-||..+...... -.++.+..+++|.+| +.+.|.||.+
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 2589999999754221223444556677888888766543321 223334444556654 4555655543
No 265
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.64 E-value=0.013 Score=59.08 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---hHHHHHHHhhcccC-CCCeeee--CCHHHHHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT---SKVDETLDRAHREG-QLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~---~~~~~~~~~~~~~g-~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
+++.|+|.|-.|++++..|++.|.+ |+++||++ ++.+++.+.....+ ...+..+ .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999997 99999997 66666554321110 0011111 1222332333448999999
Q ss_pred cCCCchH--HHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 80 VKAGSPV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v--~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+|.+-.- +.. +.. ...+.++.+++|.--... .| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPK-KT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCC-CC-HHHHHHHHCCCeee
Confidence 9876311 100 000 134677889999876543 33 44455566665443
No 266
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0073 Score=61.31 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeee-eCCHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
+|+||+|+|. |.-|..|.+.|+.+.. +|..+..+..+=+.+.+...+. |...... ..+++++ ....+|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 3579999996 9999999999998854 6666654432212222221110 0000111 1233433 223489999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHH-HHHHc--CCeEEcCCCCCChh----hhhcCC-cccCCCCH
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQK--GLLYLGMGVSGGEE----GARHGP-SLMPGGSF 152 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~-~l~~~--gi~~v~~pvsgg~~----~a~~G~-~i~~gg~~ 152 (505)
|++.. .+.+..+ +.+|..|||+|+.+--......+ ..... +-.+++--+-|-+| ..+... .-.+|+-+
T Consensus 79 Phg~s-~~~v~~l---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCyp 154 (349)
T COG0002 79 PHGVS-AELVPEL---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYP 154 (349)
T ss_pred CchhH-HHHHHHH---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchH
Confidence 99843 3333333 34577799999976433223222 22211 11111222222222 122222 33577755
Q ss_pred -HHHHHHHHHHHH
Q 010652 153 -EAYNNIRDILQK 164 (505)
Q Consensus 153 -e~~~~v~~ll~~ 164 (505)
.+.-.+.|+++.
T Consensus 155 Ta~iLal~PL~~~ 167 (349)
T COG0002 155 TAAILALAPLVKA 167 (349)
T ss_pred HHHHHHHHHHHHc
Confidence 455567888775
No 267
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.62 E-value=0.019 Score=49.51 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHHhC----CCcEE-EEeCChhHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 13 GLAVMGQNLALNVAEK----GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 13 GlG~mG~~lA~~La~~----G~~V~-v~dr~~~~~~-~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|.||+.++..|.++ +++|. ++||+ .... ....... +...+.+++++++.. .+|+||-|.+. +++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 56655 67988 2110 0111111 135678999999833 39999999544 455
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChh---hHHHHHHHHHHcCCeE
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYL---NTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~---~t~~~~~~l~~~gi~~ 128 (505)
.+. +.+.|..|.-||..+..... .-.++.+..++.|.+|
T Consensus 73 ~~~---~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEY---YEKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHH---HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHH---HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 444 44456688888888776555 2223333444456554
No 268
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.62 E-value=0.075 Score=52.24 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=97.5
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
++...++-.|+++. +|++|+-+|-|...-.+++.+++.+++|.+|.++.|.++....+..+.+.++.+....... +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56677777788887 9999999999986678889999999999999999999887776776666655444443311 2
Q ss_pred ChhhhhcCC-cccCC-CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 010652 136 GEEGARHGP-SLMPG-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 136 g~~~a~~G~-~i~~g-g~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.++.. |. .+.-| .++|..+++-++.++++ +..+.+-..-.+...-|. ..+.+...+.+.+=+....+..
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~------k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKAR------GKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhC------CCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 223333 33 33222 38899999999999998 556655433333333333 2233334445555555555554
Q ss_pred CCC
Q 010652 214 GLS 216 (505)
Q Consensus 214 ~l~ 216 (505)
|.+
T Consensus 274 gAP 276 (340)
T TIGR01723 274 GAP 276 (340)
T ss_pred cCc
Confidence 333
No 269
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.60 E-value=0.012 Score=59.22 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=73.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+..............+..+..+.+..+|+||-++|.+-.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 469999999999999999999997 6999999999988887642110000001112222111112238999999987631
Q ss_pred HH-H-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 VD-Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~-~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
-. . -++ ...+.++.++.|.--.. ..| ...+..+++|...++
T Consensus 208 ~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 208 AHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEEc
Confidence 10 0 011 12356778999986644 333 445555667765543
No 270
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.60 E-value=0.027 Score=53.70 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.++++ .+++-+...+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc
Confidence 3689999999999999999999997 79999987533222222100 00000000011122222221 155555555442
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-. .+ .+...+..-|+||++... +..-..+.+.+.+.++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 222334556899998755 3444445566677788888766543
No 271
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.60 E-value=0.017 Score=58.79 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=45.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
||+|||+|.+|.++|..|+.+|. ++.++|+++++.+. +.....-.+..+.+. ..+.+++. .+|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~----~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCA----DADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhC----CCCEEEECC
Confidence 79999999999999999998886 69999998775432 222111000001222 34444433 399999977
Q ss_pred C
Q 010652 81 K 81 (505)
Q Consensus 81 p 81 (505)
-
T Consensus 77 G 77 (307)
T cd05290 77 G 77 (307)
T ss_pred C
Confidence 3
No 272
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.59 E-value=0.055 Score=55.74 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--------CCC--cEE-EEeCChhH-------HHHHHHhhcccCCC-Cee-----eeC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAE--------KGF--PIS-VYNRTTSK-------VDETLDRAHREGQL-PLT-----GHY 61 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~--------~G~--~V~-v~dr~~~~-------~~~~~~~~~~~g~~-~i~-----~~~ 61 (505)
..+|+|+|+|++|+.+++.|.+ .|. +|. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998877 464 433 45754221 12222211111000 010 012
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh-hHHHHHHHHHHcCCeEE-cCCCCCChh
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~t~~~~~~l~~~gi~~v-~~pvsgg~~ 138 (505)
+++++++.. .+|+||-+++. ....+.. ...+..|.-||..++.... .-.++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~-~~a~~~~---~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTND-KNAHEWH---LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCc-HHHHHHH---HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 677777532 38999988855 3444443 3445577778877664211 22234444445676654 455766654
No 273
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.58 E-value=0.0049 Score=64.46 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEEec
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil~v 80 (505)
+++||+|+|+ |..|..|.+.|.++ +++|+.+.++...-+.+................ +.+++ + ++|+||+++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~---~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-S---DVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-c---CCCEEEEcC
Confidence 4568999996 99999999999998 678888876543322211111000000011111 22222 3 499999999
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|.+ ...+++.. +..|..|||.|+.+
T Consensus 113 p~~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 113 PHG-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred CHH-HHHHHHHH----HhCCCEEEEcCchh
Confidence 985 34444444 44689999999875
No 274
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.57 E-value=0.011 Score=60.10 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|||+ |.+|.++|..|+..|. ++.++|++..+ ..++...... ..+..+....+..+.++.+|+||++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~---~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTP---AKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCc---ceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 58999999 9999999999998885 79999998111 1122211110 124432111111222334999999874
Q ss_pred CC----c-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 82 AG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+ . .++++.+.+.++ .+..++|..||-
T Consensus 78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNP 119 (310)
T cd01337 78 VPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNP 119 (310)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCc
Confidence 32 1 233444556555 467788888774
No 275
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.037 Score=59.73 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEEe--cC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil~--vp 81 (505)
.++|.|+|+|..|.++|+.|.++|++|+++|++.....++.... ++.... ...+.+.+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 35799999999999999999999999999998876554432221 122221 22333344 8888875 34
Q ss_pred CCch-HHHHHH---------HHhhc------c-CC-CCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 82 AGSP-VDQTIA---------ALSEH------M-SP-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~~~-v~~vl~---------~l~~~------l-~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+ +...-+ ++.-. . .+ .-|-|.+|++...++.-+...+...|...
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 4332 222210 11101 1 12 24556666666666655666777666543
No 276
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.55 E-value=0.022 Score=58.72 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc---cc-CCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH---RE-GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~---~~-g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..+|.|||+|.+|..+|.+|++.|+ +++++|++.-....+..+.. .+ + .+..-+...++.+..+ .+++-+..+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~-~g~~Ka~aa~~~l~~i-np~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAK-QKKPKAIAAKEHLRKI-NSEVEIVPV 101 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHcc-CCccHHHHHHHHHHHH-CCCcEEEEE
Confidence 3689999999999999999999998 79999988522222111100 00 0 0000011112222222 156666666
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.... ..+.++++ +..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 102 ~~~~-~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 102 VTDV-TVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred eccC-CHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 5432 22233333 4456899999754 4443444555666788887665543
No 277
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.53 E-value=0.021 Score=53.08 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=63.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|.|||+|.||..++.+|++.|.. ++++|.+.-....+..+.......+-.-.....+.++.+ .+++=+.+.+... .
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~-~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKI-D 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeec-C
Confidence 589999999999999999999984 999998862212221110000000000011111222221 1444444443321 1
Q ss_pred HHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc-CCeEEcCCCC
Q 010652 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~-gi~~v~~pvs 134 (505)
.+ .+...+..-++||+++. .+..-..+.+.+.++ ++.|+.+...
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hh---hHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 11 22233455689999844 344334455555555 7877765433
No 278
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.52 E-value=0.0096 Score=60.60 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhH--HHHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEEEEe
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~~---s~~e~v~~l~~advIil~ 79 (505)
||+|||+ |.+|.++|..|+..|+ ++.++|+++.. ..++.. .... .++..+. ++.+..+ .+|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~--~~i~~~~~~~~~~~~~~---daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTA--ASVKGFSGEEGLENALK---GADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcC--ceEEEecCCCchHHHcC---CCCEEEEe
Confidence 6999999 9999999999998886 79999998721 111111 1100 1234321 2233344 49999998
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.-.+. .++++.+.+..+ .++.++|..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 74421 234444556555 4677788887743
No 279
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.50 E-value=0.016 Score=59.15 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=59.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcC-CCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~-~advIil~vp~~~~ 85 (505)
.+|+|+|+|-+|..-.+.....|.+|+++||+++|.+.+.+.++.. ....+.++..+.++ ..|+|+.+++ ...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997776666666668999999999999998888776542 22211122222221 2788888888 555
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++..++ .|.++-.++-.+..
T Consensus 242 ~~~~l~----~l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSLK----ALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHH----HHhcCCEEEEECCC
Confidence 544443 34444444444443
No 280
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.011 Score=59.18 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=59.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-|. +|.++|..|.++|..|+++++.. .++++.+.. +|+||.++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5799999987 99999999999999999997542 255666666 9999999966544
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5578999999998654
No 281
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.033 Score=60.43 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~~ 84 (505)
.+|.|+|+|..|.+.++.|.+.|++|+++|++++..+.+.+.+. .+.......+.+.. +|+||.+- |...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCCC
Confidence 57999999999999999999999999999988776655443221 11111223333444 89888865 3322
Q ss_pred h-HHHHHH---------HHh-hcc-----C-C-CCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 85 P-VDQTIA---------ALS-EHM-----S-P-GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 85 ~-v~~vl~---------~l~-~~l-----~-~-g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+ +...-+ ++. ... . + .-|-|.+||+...++.-+...+...|..
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 2 221111 121 111 1 2 2455667777766666666777776643
No 282
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.42 E-value=0.031 Score=56.12 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=80.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|.|. |.+|..+-.+|...|++ .++..+|.+ .++. .++..+.+++|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 468999995 99999999999999999 777777762 1111 1467788999988742 269999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.+.+++++....- -..+||-.+.-...+.+++.+..++.|+++++.-..|
T Consensus 75 -~v~~~l~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 6777777766532 2234443333322223566667778899999855443
No 283
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.38 E-value=0.027 Score=56.77 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---hHHHHHHHhhcccCCCCeeeeCCHHH---HHhhcCCCcEEEEe
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT---SKVDETLDRAHREGQLPLTGHYTPRD---FVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~---~~~~~~~~~~~~~g~~~i~~~~s~~e---~v~~l~~advIil~ 79 (505)
.++.|+|+|-.+++++..|+..|. +|+++||++ ++.+++.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 469999999999999999999997 799999995 4777666542111000112 223321 22233458999999
Q ss_pred cCCCch--HHH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 80 VKAGSP--VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 80 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+|.+-. .+. .... ...++++.++.|.--... .| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNPH-MT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCCc-cC-HHHHHHHHCCCeEEC
Confidence 987632 111 1100 123667889999865433 33 455556677765543
No 284
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.37 E-value=0.052 Score=51.76 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=52.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|-|||.|.||...+..|.+.|++|++++++.. .+.++.+.+ .+.... ...+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987653 334444332 122221 1111 1233489999888775
Q ss_pred hHHHHHHHHh
Q 010652 85 PVDQTIAALS 94 (505)
Q Consensus 85 ~v~~vl~~l~ 94 (505)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5666554443
No 285
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.36 E-value=0.015 Score=59.63 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HH----HHHHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VD----ETLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~----~~~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|||+ |.+|.++|..|+..|. ++.++|++++. ++ ++.... .... ++....+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EIVITDDPNVAFKD-- 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ceEEecCcHHHhCC--
Confidence 58999999 9999999999998886 79999995432 21 222110 0000 12233333333343
Q ss_pred CCcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 72 RPRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 72 ~advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+|+||++.-.+ . .++++.+.+..+.++..++|..|| |-++.
T Consensus 79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 134 (322)
T cd01338 79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN--PCNTN 134 (322)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC--cHHHH
Confidence 99999986332 1 134444566666544667777765 44443
No 286
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.36 E-value=0.021 Score=58.36 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G--~~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.|.||+|||+ |.+|..+|..|+..+ .++.++|++.... .++...... ..+...+++.+..+.++++|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEEC
Confidence 4579999999 999999999999665 5899999943211 122211111 1233333332222333449999988
Q ss_pred cCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCChh
Q 010652 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~ 112 (505)
.-.+. .++++++.+.++ .+..+|+-.||....
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 74421 122223344443 455677777665433
No 287
>PLN00106 malate dehydrogenase
Probab=96.36 E-value=0.021 Score=58.36 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..||+|||+ |.+|..+|..|+..+. ++.++|+++..- .++...... ..+....+..+..+.++.+|+||++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~---~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP---AQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC---ceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 368999999 9999999999997765 799999987211 122211110 12332223322333344599999987
Q ss_pred CCC----ch-----------HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAG----SP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-.+ .. ++++.+.+..+- +..+|+..||-.
T Consensus 95 G~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPv 138 (323)
T PLN00106 95 GVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 432 11 222233444433 566777766644
No 288
>PRK05442 malate dehydrogenase; Provisional
Probab=96.33 E-value=0.028 Score=57.65 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=59.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HH----HHHHHhh-cccCCCCeeeeCCHHHHHhhc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KV----DETLDRA-HREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~--~~----~~~~~~~-~~~g~~~i~~~~s~~e~v~~l 70 (505)
+.||+|||+ |.+|.++|..|...|. ++.++|++++ ++ .++.... .... +.....+..+.+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~~i~~~~y~~~~d- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GVVITDDPNVAFKD- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--CcEEecChHHHhCC-
Confidence 458999998 9999999999988765 7999999643 22 1222111 0000 12333333333444
Q ss_pred CCCcEEEEecCC----Cc-----------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 71 QRPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 71 ~~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+||++.-. +. .++++.+.+..+.++..++|-.||
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 9999987632 21 144444566665656677777775
No 289
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.32 E-value=0.048 Score=58.62 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEec-
Q 010652 5 ALSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v- 80 (505)
..++|.|+|+|..|.+ +|+.|.++|++|+++|.++. ..+++.+.+ +... ....+.++ .+|+||.+-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~---~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIK---DADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCC---CCCEEEECCC
Confidence 3467999999999999 89999999999999997654 233343322 2332 12223333 389888754
Q ss_pred -CCCc-hHHHHH---------HHHhhc-cC-CCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 81 -KAGS-PVDQTI---------AALSEH-MS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 -p~~~-~v~~vl---------~~l~~~-l~-~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
|... .++... -+++.. +. ...|-|.+||+...++.-+...++..|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 3322 233221 123222 22 2356777788887777767777877774
No 290
>PRK08328 hypothetical protein; Provisional
Probab=96.32 E-value=0.028 Score=54.72 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCe-eeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..+|.|+|+|-.|..++.+|+..|. +++++|.+.-....+..+... ....+. ......++-+..+ .+++.+.+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVG 105 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEec
Confidence 3689999999999999999999997 688998776544444322100 000000 0000111111211 27777777554
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
. ...+-+++ .+..-++|||+.-. +..-..+.+.+.+.++.++.+.+.|
T Consensus 106 ~-~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 106 R-LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred c-CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 2 22222233 34566999998766 3333344455677788888766554
No 291
>PLN02477 glutamate dehydrogenase
Probab=96.32 E-value=0.026 Score=59.42 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~dr~----------~~~~~~~~~~~~~~g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
++|+|.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..++...-..+ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 689999999999999999999999988 77877 55543333321100000 1111 234444432 489
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+++-|--.+....+.+ +.+ +=++|+...|... |.+..+.|.++|+.|+.
T Consensus 284 vliP~Al~~~I~~~na----~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 284 VLIPAALGGVINKENA----ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EEeeccccccCCHhHH----HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 9887755443222222 333 3478888888764 56677889999998874
No 292
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.29 E-value=0.0059 Score=54.15 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+|.+|..++.+|++.|. +++++|.+.=..+.+..+.. .....+..-+...++.+.++ .|++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 69999977532222211100 00000011112223333322 1444455555532
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
....++++. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 233334444 345899998765 4455567777888899999877654
No 293
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.21 E-value=0.046 Score=55.02 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=78.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+.||.|.|. |.+|..+..+|.+.||+ .+|=.+|.+ .++. .++..+.+++|+-+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v---------~G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE---------eCeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 468999996 99999999999999997 555444431 1111 1367788999887621 279999999985
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.+.+++++....- -...||-.+.-...+.+++.+...+.|+++++....|
T Consensus 77 -~v~~~l~e~~~~g-vk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDAG-IDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 6777777766532 2334444443333334466777778899999865443
No 294
>PRK05086 malate dehydrogenase; Provisional
Probab=96.21 E-value=0.024 Score=57.83 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=58.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChhHH---HHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAE---KGFPISVYNRTTSKV---DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~---~G~~V~v~dr~~~~~---~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIi 77 (505)
|||+|||+ |.+|..++..|.. .+++++++|+++... -++.... .. ..+.. .+++.+.++ .+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~~--~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-TA--VKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-CC--ceEEEeCCCCHHHHcC---CCCEEE
Confidence 58999999 9999999988854 356899999986431 1222111 00 02332 234344444 499999
Q ss_pred EecCCCc---------------hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9984321 233444555554 4667888777743
No 295
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.065 Score=57.35 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=71.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~v- 80 (505)
-.|.|+|+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... .+. +.+.+ +|+||.+-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~ 77 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPG 77 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCC
Confidence 3599999999999999999999999999997653 2233433100 12221 233 33444 88887743
Q ss_pred -CCCch-HHHHHH---------HHhhc-cCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 81 -KAGSP-VDQTIA---------ALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 81 -p~~~~-v~~vl~---------~l~~~-l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
|...+ +....+ +++.. +...-|-|-+|++...++.-+...|...|..+.-.+..|.
T Consensus 78 i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 78 LALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 33222 222211 23322 2333456667777766666667777777765544444433
No 296
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.17 E-value=0.048 Score=55.82 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=60.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHH----HHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVD----ETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~----~~~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
..||+|||+ |.+|.++|..|...|. ++.++|+++ ++++ ++........ .+.....+..+.+++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~d-- 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL-AGVVATTDPEEAFKD-- 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc-CCcEEecChHHHhCC--
Confidence 358999998 9999999999998885 799999965 2222 2221110000 012232333333344
Q ss_pred CCcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 72 RPRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+||++.-.+ . .++++.+++.++.++..+++..||
T Consensus 80 -aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 80 -VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999986332 1 244555666676654677777765
No 297
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.05 Score=55.41 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--------CCc--EE-EEeCChhHHHHHHHhhcccCCCCeeeeCCH-----HHHHh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEK--------GFP--IS-VYNRTTSKVDETLDRAHREGQLPLTGHYTP-----RDFVL 68 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~--------G~~--V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~-----~e~v~ 68 (505)
+..+|+|+|+|.+|+.+++.|.++ |.+ |. +.||+..+...+.-... ....+++ .+++.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 75 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVLL 75 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhhc
Confidence 356899999999999999999875 333 33 45776655431100000 1122333 44443
Q ss_pred hcCCCcEEEEecCC-CchHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHHHcCCe-EEcCCCCCChh
Q 010652 69 SIQRPRSVIILVKA-GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 69 ~l~~advIil~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~~~gi~-~v~~pvsgg~~ 138 (505)
. +..|+|+.+++. -...+. ++.+...++.|..||.......... .++.+..++.|.. +..+-|.||.+
T Consensus 76 ~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 76 D-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred c-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 3 346899998877 445565 6777888889998886544322111 1344444555654 46677777654
No 298
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.015 Score=58.38 Aligned_cols=74 Identities=12% Similarity=0.247 Sum_probs=55.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|++++..|.+.|.+|+++++... ++.+.+.. +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 5799999997 999999999999999999997321 23333344 9999999965443
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. . ..+.+|.+|+|.+...
T Consensus 216 v~---~---~~lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IK---K---DWIKQGAVVVDAGFHP 234 (283)
T ss_pred CC---H---HHcCCCCEEEEEEEee
Confidence 22 1 3478999999987653
No 299
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.16 E-value=0.012 Score=59.52 Aligned_cols=75 Identities=33% Similarity=0.582 Sum_probs=59.2
Q ss_pred HHHHHHHHhccC-CcchhhHhhhhhhcccccccCCchhHHHHHhhhCCCccHHHHHHHHHHcCCCcchhHHHHHHHHHcc
Q 010652 219 ELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 219 ~i~~~~~~~~~g-~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~A~~~r~~s~ 297 (505)
++.++++.|+.+ .++|++++...+++.. +++ .+.++...||. ++++|+++.|.+.|+|+|++.++++.|+.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAE-DPK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhh-CCC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 577778889864 5899999998888764 322 24667777764 4667999999999999999999877888887
Q ss_pred cc
Q 010652 298 LK 299 (505)
Q Consensus 298 ~~ 299 (505)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 66
No 300
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.15 E-value=0.014 Score=60.13 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=57.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V---~v~dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp 81 (505)
++|+|+|. |..|..+.+.|.++||++ ....++.+.-+.+.-.+ . .+...+ +..++ + .+|+||+|+|
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~~-~---~vDvVf~A~g 72 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFDF-S---GVDIALFSAG 72 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHHH-c---CCCEEEECCC
Confidence 58999996 999999999999988864 55544432212221111 1 123222 22222 3 3999999999
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.+ ...++...+. ..|..|||.|+.+
T Consensus 73 ~g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 73 GS-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred hH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 86 4455554443 4678999998754
No 301
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.078 Score=56.99 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+.+. .+|+||.+ +|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~~ 79 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLTH 79 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCccC
Confidence 5799999999999999999999999999998765444443322 222111112223 38988863 23221
Q ss_pred -----hHHHHHH---------HHhhcc------CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 85 -----PVDQTIA---------ALSEHM------SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 -----~v~~vl~---------~l~~~l------~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+....+ ++.... ...-|-|.+|++...++.-+...++..|...
T Consensus 80 ~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 80 PKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred CcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 2333221 111111 2234556666666666655666777766544
No 302
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.13 E-value=0.014 Score=54.11 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCcEEEEcccHHHHHHHHH-HH-hCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 5 ALSRIGLAGLAVMGQNLALN-VA-EKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~-La-~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+.++.+||.|++|++++.. +. ++|+++. +||.+++++-..... ..+.-.+++++.+++ .+.|+.++|||
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTVP 155 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEcc
Confidence 45689999999999999843 44 6788765 789999875443321 124445677777764 14789999999
Q ss_pred CCchHHHHHHHHhhc
Q 010652 82 AGSPVDQTIAALSEH 96 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~ 96 (505)
.. ...++.+.|...
T Consensus 156 a~-~AQ~vad~Lv~a 169 (211)
T COG2344 156 AE-HAQEVADRLVKA 169 (211)
T ss_pred HH-HHHHHHHHHHHc
Confidence 95 567777766653
No 303
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.08 E-value=0.019 Score=52.53 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=51.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++..+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999986 699999999999999999987553 245555665 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 32 235789999999988764
No 304
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.06 E-value=0.042 Score=58.41 Aligned_cols=117 Identities=10% Similarity=0.018 Sum_probs=77.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChhHHHHHHHhh--cccCCC----CeeeeCCHHHHHh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVY-N----------RTTSKVDETLDRA--HREGQL----PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~-d----------r~~~~~~~~~~~~--~~~g~~----~i~~~~s~~e~v~ 68 (505)
-++|+|.|.|++|+.+|+.|.+.|.+|+.. | .+.+.+.+..+.. .-.+ + +.. ..+.+++..
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~-~~~~~~~~-~i~~~~i~~ 309 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISE-YAEEFGAE-YLEGGSPWS 309 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhh-hhhhcCCe-ecCCccccc
Confidence 368999999999999999999999998876 8 6666555444321 0000 0 011 123344433
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
. +||+++-|...+....+....+.. ..=++|+...|... |.+..+.|.++|+.++.
T Consensus 310 ~--d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 310 V--PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred c--CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 1 489999998876554555555542 13368888888764 66777888999998874
No 305
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.04 E-value=0.013 Score=59.44 Aligned_cols=92 Identities=35% Similarity=0.630 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHhccCC-cchhhHhhhhhhcccccccCCchh-HHHHHhhhCCCccHHHH
Q 010652 197 GDMQLISEAYDVLKH--VGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL-VDKILDKTGMKGTGKWT 272 (505)
Q Consensus 197 ~~~~~i~Ea~~l~~~--~g~l~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~-ld~i~~~~~~kgtg~~~ 272 (505)
+.++.++|++.++++ .| +|++++.++ |+.+. +.|++++.+.+++..++ .+. +..+.++ +++.+|+
T Consensus 182 ~~~~~~aEa~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~----~~~~~~~~~kd---~~~~~~~ 250 (301)
T PRK09599 182 GMMQAYAEGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAEDP----KLDEISGYVED---SGEGRWT 250 (301)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCC----CHHHHHHHHHh---hCcHHHH
Confidence 367889999999999 88 999988777 67764 69999999998885432 222 3344444 4456899
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHcccc
Q 010652 273 VQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 273 ~~~A~~~gvp~p~i~~A~~~r~~s~~~ 299 (505)
++.|.+.|+|+|++++++..|+.+...
T Consensus 251 ~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 251 VEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 999999999999999988888887654
No 306
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.03 E-value=0.025 Score=57.49 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=49.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+. .+.. ..+++.+.+.++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899999 5999999999999999999999999876544332221 1111 1244555555566999988754
No 307
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.99 E-value=0.018 Score=59.31 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEe
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~V~---v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~ 79 (505)
+|++|+|+|+ |..|.-|.+.|.+++|.+. .. .+.++..+....... .+... .+..++ + ++|++|++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~----~l~~~~~~~~~~-~---~vD~vFla 73 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGK----NLRVREVDSFDF-S---QVQLAFFA 73 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCc----ceEEeeCChHHh-c---CCCEEEEc
Confidence 3479999996 9999999999998877533 23 222222111111001 12221 122333 3 39999999
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+|.+ ....++..+. ..|..|||.|+.+
T Consensus 74 ~p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 74 AGAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred CCHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 9975 4444444443 4688999999865
No 308
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.98 E-value=0.031 Score=47.43 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHH-HHHHHh
Q 010652 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALS 94 (505)
Q Consensus 16 ~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~-vl~~l~ 94 (505)
.-+..++..|.+.|.+|.+||..-........... . ++..++++++.++. +|.||++++... .+. -.+.+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~-~---~~~~~~~~~~~~~~---~D~vvl~t~h~~-f~~l~~~~~~ 88 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKL-E---GVEVCDDLEEALKG---ADAVVLATDHDE-FRELDWEEIA 88 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHH-H---CEEEESSHHHHHTT---ESEEEESS--GG-GGCCGHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCc-c---ceEEecCHHHHhcC---CCEEEEEecCHH-HhccCHHHHH
Confidence 34677899999999999999988665433221100 1 36788899998887 999999998864 443 346777
Q ss_pred hccCCCCEEEeCCCCC
Q 010652 95 EHMSPGDCIIDGGNEW 110 (505)
Q Consensus 95 ~~l~~g~iiId~st~~ 110 (505)
..+.++.+|+|+-+..
T Consensus 89 ~~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 89 KLMRKPPVIIDGRNIL 104 (106)
T ss_dssp HHSCSSEEEEESSSTS
T ss_pred HhcCCCCEEEECcccc
Confidence 7778899999987754
No 309
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.98 E-value=0.011 Score=56.89 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=51.8
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~L--a~~G~~V~-v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....+++++++. ..+|.+++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 5799999999999999863 35688876 57998776432211 0 012223455666543 2489999999986
Q ss_pred chHHHHHHHHh
Q 010652 84 SPVDQTIAALS 94 (505)
Q Consensus 84 ~~v~~vl~~l~ 94 (505)
. ..++.+.+.
T Consensus 158 ~-~~~i~~~l~ 167 (213)
T PRK05472 158 A-AQEVADRLV 167 (213)
T ss_pred h-HHHHHHHHH
Confidence 4 445544443
No 310
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.98 E-value=0.087 Score=50.35 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=49.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|.|||.|.+|..-+..|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ ++ .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5899999999999999999999999999987654 344444432 23321 13233 33 48898888666
Q ss_pred CchHHHH
Q 010652 83 GSPVDQT 89 (505)
Q Consensus 83 ~~~v~~v 89 (505)
. .+..-
T Consensus 80 ~-~ln~~ 85 (205)
T TIGR01470 80 E-ELNRR 85 (205)
T ss_pred H-HHHHH
Confidence 4 34433
No 311
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.97 E-value=0.096 Score=52.88 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=79.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
++++.+|.++|.+..+.+.+++|++.+-++ .++|.+++.++.+.| -.+|..++.-...+.++ +. ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKR-TF-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcC-CC-----CCC
Confidence 788999999999999999999999988764 349999999999877 46788777654433222 11 122
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|. +.-...+++-++..|-+.|+|+|....+..+|+...
T Consensus 230 f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~ 267 (292)
T PRK15059 230 FK--IALHQKDLNLALQSAKALALNLPNTATCQELFNTCA 267 (292)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 32 233456778999999999999999998888776543
No 312
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.96 E-value=0.1 Score=56.79 Aligned_cols=116 Identities=15% Similarity=0.057 Sum_probs=68.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
.+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+... .+.......+.+.. +|+||.. +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~---~~~~g~~~~~~~~~---~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDA---EFVGGPFDPALLDG---VDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCc---EEEeCCCchhHhcC---CCEEEECCCCCC
Confidence 5799999999999999999999999999997543 233443332100 12222223344444 8998886 444
Q ss_pred C-----chHHHHH-------------HHHhhcc-----CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 83 G-----SPVDQTI-------------AALSEHM-----SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~-----~~v~~vl-------------~~l~~~l-----~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
. +.+...- ..+...+ .+..|-|-+||+...++.-+...|...|...
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 2 1221111 1122111 1234667777777767766677777776543
No 313
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.94 E-value=0.022 Score=58.55 Aligned_cols=111 Identities=16% Similarity=0.230 Sum_probs=72.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~-G-~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.++|.|+|+ |.||+.+++.|+.+ | .+|++++|++++...+..+.... . ..++++.... +|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~-----~-i~~l~~~l~~---aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG-----K-ILSLEEALPE---ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc-----c-HHhHHHHHcc---CCEEEECCcC
Confidence 367999998 89999999999864 5 58999999998887776543210 1 1245555554 9999988765
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
...+ +++. ..+.++.++||.+- |.+..... .+.|+++++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 4321 1211 12368899999853 44443222 2367888776543
No 314
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.93 E-value=0.045 Score=56.43 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCC--CeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~--~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..+|.+|++.|. +++++|.+.-....+..+.... ... +..-.....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 4689999999999999999999998 8999998754333332211000 000 000011112222222 1556555554
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.... ... +.+.+..-|+|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~---~~~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEE---LEELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHH---HHHHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 4321 222 22334566999999765 3444445566667788787665443
No 315
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.094 Score=56.64 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HH----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~~----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
.+|.|||.|..|..+|..|++.|++|+++|+++. .. +.+.+.+. .+....... .. ..+|+||++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-----~~~~~~~~~-~~---~~~D~Vv~s~G 87 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-----TVRLGPGPT-LP---EDTDLVVTSPG 87 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-----EEEECCCcc-cc---CCCCEEEECCC
Confidence 4799999999999999999999999999996653 22 22332221 122112222 22 2389999876
Q ss_pred --CCCchHHHHHH---------HHh-hccCC----CCEEEeCCCCChhhHHHHHHHHHHcCCe
Q 010652 81 --KAGSPVDQTIA---------ALS-EHMSP----GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 81 --p~~~~v~~vl~---------~l~-~~l~~----g~iiId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
|+...+...-+ +++ ..+.+ ..|-|-+|++...++.-+...+...|..
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~ 150 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLR 150 (480)
T ss_pred cCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence 22222222111 222 22322 2366667777766666666777766554
No 316
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=95.91 E-value=0.049 Score=57.92 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=63.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChhHHHHHHHhhcccC---CCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-------GF--PISVYNRTTSKVDETLDRAHREG---QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-------G~--~V~v~dr~~~~~~~~~~~~~~~g---~~~i~~~~s~~e~v~~l~~a 73 (505)
-||+|||+ |.+|..+|..|+.. |. ++.++|++.++++...-...... ..++....+..+..++ +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---a 177 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---A 177 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---C
Confidence 58999999 99999999999988 65 78899999987643321110000 0023433333333344 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
|+||++.-.+ . .++++.+.|.....+..+||..|| |-++.
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN--PvDv~ 232 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN--PCNTN 232 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC--cHHHH
Confidence 9999976332 1 134444555554456677777775 44443
No 317
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.12 Score=55.22 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~----~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 57999999999999999999999999999987532 233333221 12212334443321 278887754
Q ss_pred CCCch-HHHHHH---------HHhhcc-CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 KAGSP-VDQTIA---------ALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 p~~~~-v~~vl~---------~l~~~l-~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.+.+ ++...+ ++...+ ....|-|.+|++...++.-+...|...|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 33222 222221 222222 3334666677777666666667777666433
No 318
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.90 E-value=0.03 Score=53.20 Aligned_cols=126 Identities=12% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-cc--CCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-RE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~--g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+.- .. ...+..-+....+.++++ .|++-+..++
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 4689999999999999999999997 49999877432222211100 00 000000011112222222 2666666664
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
... . +..+.....+.+-++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 98 ~~~-~-~~~~~~~~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDS-L-SNDSNIEEYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred ccc-c-cchhhHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 421 1 0111222233455899988543 5555566677788888888776544
No 319
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.88 E-value=0.095 Score=55.79 Aligned_cols=119 Identities=20% Similarity=0.161 Sum_probs=70.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHH---HHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEec-
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDE---TLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~-~~~---~~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v- 80 (505)
+|.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 211 22110 0 12222 23 333343 89888754
Q ss_pred -CCCch-HHHHH---------HHHh-hccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 81 -KAGSP-VDQTI---------AALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 81 -p~~~~-v~~vl---------~~l~-~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
|.+.+ +.... -+++ ..+....|-|.+|++...++.-+...|...|..+.-.+-.|
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig 138 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIG 138 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccC
Confidence 33322 22221 1222 22333356666777777666666777887776554333333
No 320
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.88 E-value=0.16 Score=51.22 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=76.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+.++.+..++|++.+..+. ++|.+++.++|+.+ .-+|.+++.....+.+. +. ++.
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~-----~~~ 232 (296)
T PRK11559 166 GAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NF-----KPG 232 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CC-----CCC
Confidence 6788999999999999999999999998743 39999999999976 55677666543322221 11 112
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|. +.-...+++-++..|-+.|+|.|.+.++...|+...
T Consensus 233 f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 270 (296)
T PRK11559 233 FR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALK 270 (296)
T ss_pred cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 22 222345568888999999999999999998776543
No 321
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.054 Score=52.32 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=57.4
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|....++++-|.|. |.+|..++..|+++|++|++.+|++++.+++.+... +.-.. ..++..=
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~D 63 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--------------STGVK---AAAYSID 63 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hCCCc---EEEEEcc
Confidence 55445567888885 999999999999999999999999877665543211 00000 2222223
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+...+...++.+.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 64 LSNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 334444555566655544445677766543
No 322
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.82 E-value=0.032 Score=53.88 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=52.3
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCC
Q 010652 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~--~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|. |..|+.++..|.+.+++|.+.-|++. ..+.+.+.+... +.. ..+.+.+.+.++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999999999999988864 355555554321 111 33667777777889999999884
No 323
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.038 Score=55.22 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=57.5
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||-| .+|.++|..|.++|..|++++... .++++.++. +|+||.++..+..
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 579999998 999999999999999999985322 234455565 9999999987653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 32 12467999999998754
No 324
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.79 E-value=0.034 Score=53.47 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|.+|..+|.+|++.|.. ++++|.+.=....+..+.......+-.-.....+-++.+ .+++-+..++..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~- 105 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK- 105 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-
Confidence 35899999999999999999999985 999998842222221110000000000011111112211 145555555432
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc-CCeEEcC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~-gi~~v~~ 131 (505)
.....+++ .+..-++|||++-. +.....+.+.+.+. ++.++.+
T Consensus 106 i~~~~~~~---~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 106 IDEDNIEE---LFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred cCHHHHHH---HHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEe
Confidence 11122222 34456899998543 34444455666666 7777765
No 325
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.75 E-value=0.067 Score=48.86 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=50.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.+|...+..|.+.|++|++++. +..+++.+.. .+... ..+++ ..+..+|+|+.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp--~~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP--EICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC--ccCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 5799999999999999999999999999963 3344444321 11221 11111 1244589888887664 5
Q ss_pred HHHHHHHHh
Q 010652 86 VDQTIAALS 94 (505)
Q Consensus 86 v~~vl~~l~ 94 (505)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 666664444
No 326
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.035 Score=56.83 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=60.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHH----Hhh-cccCCCCeeeeCCHHHHHhhcCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETL----DRA-HREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~~~----~~~-~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
||+|||+ |.+|..+|..|+..|. ++.++|+++ ++.+... ... ... .+.....+..+.+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~--~~~~i~~~~~~~~~~--- 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLL--KGVVITTDPEEAFKD--- 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhccccc--CCcEEecChHHHhCC---
Confidence 7999999 9999999999998663 599999987 5422111 110 000 012222344444554
Q ss_pred CcEEEEecCCC----ch-----------HHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 73 PRSVIILVKAG----SP-----------VDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 73 advIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
+|+||++.-.+ .. ++++..++.++..++.++|-.|| |-+..
T Consensus 77 aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 132 (323)
T cd00704 77 VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN--PANTN 132 (323)
T ss_pred CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC--cHHHH
Confidence 99999876332 11 44444566665445666666664 44443
No 327
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.69 E-value=0.036 Score=55.44 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=57.2
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~-mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+. +|.++|..|.++|..|++++... .++++.... +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999987 99999999999999999998421 255666666 9999998866543
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 32 1257799999999875
No 328
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.66 E-value=0.13 Score=55.22 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=67.0
Q ss_pred cEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEec--CC
Q 010652 8 RIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 8 ~IgiIGlG~mG~~-lA~~La~~G~~V~v~dr~~~~-~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~v--p~ 82 (505)
+|-|||.|..|.+ +|+.|.+.|++|+++|.++.. .+.+.+.+ +.... ...+.++ .+|+||.+- |.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~---~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLD---DADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCC---CCCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23333322 33322 1222333 389888753 33
Q ss_pred Cc-hHHHHH---------HHHh-hccC-CCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 83 GS-PVDQTI---------AALS-EHMS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 83 ~~-~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+. .+.... -+++ ..+. ..-|-|.+|++...++.-+...+...|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 22 233221 1222 2222 2356677777777777667777877775
No 329
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.65 E-value=0.067 Score=53.42 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... ... .+++ . ...+|+||-++|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999888775421 111 1111 1 1238999999987631
Q ss_pred --HHH---HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 --VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~---vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
.+. -++ ...+.++.+++|.--... .| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALPA-ET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCCc-cC-HHHHHHHHCcCeEeC
Confidence 000 011 123677889999866543 33 445555677765543
No 330
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.60 E-value=0.071 Score=60.17 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=72.8
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC-CCCCChh-hh-------hcCC-c
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GA-------RHGP-S 145 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~-pvsgg~~-~a-------~~G~-~ 145 (505)
||+|+|.. .+.++++++.+.++++.+|.|.+++...-.....+.+......|++. |+.|.+. |. ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68899994 78899999999999999999999998666655555444323568884 8888763 22 2344 3
Q ss_pred c-cC--CCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 010652 146 L-MP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 146 i-~~--gg~~e~~~~v~~ll~~iga~~~~~~~v~~~G~~ 181 (505)
+ .+ ..+.++++.++.+++.+| ..++.+.+.
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~G------a~~~~~~~~ 112 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAAR------ADVRAMSAE 112 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC------CEEEECCHH
Confidence 3 33 346788999999999999 456777654
No 331
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.59 E-value=0.069 Score=47.82 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=52.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|+|- ...|.+++..|.+.|..|++++++. .++++.++. +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 46777774 6677777777777777777776432 256666666 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++ ...+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 23578999999988765
No 332
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.57 E-value=0.038 Score=51.96 Aligned_cols=91 Identities=18% Similarity=0.096 Sum_probs=61.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCC----HHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYT----PRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s----~~e~v~~l~~advIil~vp 81 (505)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +...+... . .-+...+ +.+.+++ +|+||.+++
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~-h-s~t~~~~~~~~l~~~~~~---ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIR-H-EKHHVTDEEAMTLDCLSQ---SDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccc-c-ccccccchhhHHHHHhhh---CCEEEEccC
Confidence 57999995 7899999999999999999998664322 11100000 0 0010013 5566665 999999998
Q ss_pred CCch-HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.... +. ...+.+|.+|||.+...
T Consensus 136 ~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 136 SPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred CCCCccC------HHHcCCCcEEEEcCCCc
Confidence 8754 32 13467899999998764
No 333
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.54 E-value=0.039 Score=56.99 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEE
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGFP---ISVY--NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~~---V~v~--dr~~~~~~~~~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIi 77 (505)
..++|+|+|. |..|.-|.+.|.+++|. +... .|+..+.-.. .+ . .+.... +.+++ +. +|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~~-~~---~D~vf 74 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDSF-DG---VDIAL 74 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHHH-cC---CCEEE
Confidence 4579999996 99999999999998884 3222 3443332211 11 1 122222 33333 44 99999
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+++|.+ ...+....+. ..|..|||.|..+
T Consensus 75 ~a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 75 FSAGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred ECCCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 999997 4444444432 4688999998764
No 334
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.49 E-value=0.073 Score=50.54 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh----cccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~----~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..+|.|+|+|.+|..++.+|+..|. +++++|.+.=....+..+. ..-| -.-+....+.++++ -|++-+.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG---~~Ka~a~~~~L~~l-Np~v~i~~~ 96 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLG---QNRAEASLERLRAL-NPRVKVSVD 96 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcC---chHHHHHHHHHHHH-CCCCEEEEE
Confidence 4689999999999999999999998 5899987643222221110 0000 00011222223322 266666665
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
+.. +.+...++ +..-++||++.. .+.....+.+.+.++++.|+.+.+.|
T Consensus 97 ~~~--~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 97 TDD--ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred ecC--ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 442 22212222 334588888754 34555556677778888888776654
No 335
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.49 E-value=0.07 Score=54.04 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=57.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEE
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----~~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil 78 (505)
+||+|||+|.+|.++|..|...+. ++.++|++.++.+- +.......+ ....... +.++ ++.+|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~-~~~~i~~~~~y~~----~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG-SDVKITGDGDYED----LKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc-CceEEecCCChhh----hcCCCEEEE
Confidence 589999999999999999987765 79999999654322 211110000 0122222 2333 334999999
Q ss_pred ecCC----Cc-----------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 LVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.-. +. .++++.+++....+ +.+++-.||-
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNP 120 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNP 120 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCc
Confidence 8822 21 23344455666554 5566666553
No 336
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.23 Score=53.14 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEec-
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v- 80 (505)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+.. . ++.. ....++.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 357999999999999999999999999999976543 33333210 0 1222 1222333334 89998864
Q ss_pred -CCC-chHHHHHH---------HHh-hccC---CCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 -KAG-SPVDQTIA---------ALS-EHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~-~~v~~vl~---------~l~-~~l~---~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|+. +.+....+ +++ ..+. ...|-|.+|++...++.-+...|...|...
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 322 22322221 222 2221 234666677777666666677777777653
No 337
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.47 E-value=0.048 Score=54.39 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=57.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++.++. +|+||.++..+..
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 579999987 999999999999999999885321 245566666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 23577999999998764
No 338
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.47 E-value=0.18 Score=52.98 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEecCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
..|-|+|.|.+|..++..|.+.|++|.+.|.+. .++..+.+.. -+....+-++..+ .+++|+.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 459999999999999999999999999998663 3333322211 1333334445554 3567999998888764
Q ss_pred hHHHHHHHHhhccCC-CCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 85 PVDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
.-..++.. +..+.+ ..+++-..+. +..+.+++.|...+=.|
T Consensus 315 ~Nl~ivL~-ar~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLA-AKEMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHH-HHHhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 33333333 233444 4566655442 33455566677665444
No 339
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.46 E-value=0.052 Score=55.19 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+.+|+|||+ |..|..|.+.|.++.+ ++.....+..+ .+ .+.++..++ +|++|+|+|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 3579999995 9999999999998874 33322222111 01 122333344 8999999999
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ...+...++. ..|..|||.|..+
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 6 4444544443 4688999999754
No 340
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.092 Score=50.43 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
.++|.|+|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 356889985 999999999999999999999999887665543
No 341
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.41 E-value=0.07 Score=55.29 Aligned_cols=98 Identities=10% Similarity=0.174 Sum_probs=60.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh-cc------cC-CCCeee-eCCHHHHHhhcCCC
Q 010652 5 ALSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA-HR------EG-QLPLTG-HYTPRDFVLSIQRP 73 (505)
Q Consensus 5 ~~~~IgiIG-lG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~-~~------~g-~~~i~~-~~s~~e~v~~l~~a 73 (505)
|++||+|+| .|.+|..+.+.|.++.. ++.++.+++....+..... .. .+ ...+.. ..+++++ .+ +
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~ 77 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---V 77 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---C
Confidence 357999998 79999999999998765 7887766654332211100 00 00 001122 2244444 44 9
Q ss_pred cEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|+|+.++|.+ ....+.+.+. ..|..+||.|...
T Consensus 78 DvVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 78 DIVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred CEEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 9999999996 3444444433 3678899998754
No 342
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.31 Score=46.81 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=36.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
||+-|.|. |.+|..++..|++.|++|++.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888986 8999999999999999999999999887766543
No 343
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.40 E-value=0.16 Score=53.27 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=61.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-c----EE--EE--eCChhHHHHHHHhhcc---cCCCCeeeeCCHHHHHhhcCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGF-P----IS--VY--NRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~-~----V~--v~--dr~~~~~~~~~~~~~~---~g~~~i~~~~s~~e~v~~l~~a 73 (505)
-||+|||+ |.+|.++|..|+..|. . |. ++ |++.++++...-.... .-..++....+..+..++ +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 58999999 9999999999998775 2 33 44 8888775433211100 000023333333333344 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhHH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~ 115 (505)
|+||++.-.+ . .++++...+.++..+..+||-.|| |-++.
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN--PvDv~ 176 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN--PCNTN 176 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC--cHHHH
Confidence 9999976332 1 134444566665556777777775 44443
No 344
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.37 E-value=0.097 Score=53.69 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=58.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChh--HHHH----HHHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKG-------FPISVYNRTTS--KVDE----TLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G-------~~V~v~dr~~~--~~~~----~~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|+|+ |.+|..++..|...+ .+|.++|+++. +.+. +.... ...+ ++....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~--~~~~~~~~~~~l~~-- 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK--SVVATTDPEEAFKD-- 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC--CceecCCHHHHhCC--
Confidence 58999999 999999999999854 58999999653 1211 11000 0000 12233454444444
Q ss_pred CCcEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCC
Q 010652 72 RPRSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+|+||++.-.. . .++++...+..+..++.++|-.||
T Consensus 79 -aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 -VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99999876321 1 123444556666556677777776
No 345
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.37 E-value=0.069 Score=53.18 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=46.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhhc------CC-CcEEEE
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSI------QR-PRSVII 78 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~-~~~s~~e~v~~l------~~-advIil 78 (505)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++... .+.. .+. -..+++.+.+.+ +. +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~----~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEK----HVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCc----cccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 4789986 999999999999999999999999875421 1110 011 123444443333 45 899988
Q ss_pred ecCC
Q 010652 79 LVKA 82 (505)
Q Consensus 79 ~vp~ 82 (505)
+.|.
T Consensus 74 ~~~~ 77 (285)
T TIGR03649 74 VAPP 77 (285)
T ss_pred eCCC
Confidence 8765
No 346
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.23 Score=52.95 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=66.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--C
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p 81 (505)
..+|.|+|+|..|.+.++.|++.|++|+++|..+.. .+.+ +.+. .+.......+.++. +|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2233 2221 12222222333443 78766643 2
Q ss_pred CC-chHHHHHH---------HHhhcc-CCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 82 AG-SPVDQTIA---------ALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~-~~v~~vl~---------~l~~~l-~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.. +.+....+ ++...+ ....|-|-+|++...++.-+...|...|..+
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 21 22222221 233222 2234557777777767766677777766544
No 347
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.37 E-value=0.25 Score=48.77 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEe----------CChhHHHHHHHhhcccCC----C-----CeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYN----------RTTSKVDETLDRAHREGQ----L-----PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~-v~d----------r~~~~~~~~~~~~~~~g~----~-----~i~~~~s~~e~ 66 (505)
.+|.|-|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+.+.....+. + +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999988 656 223333332211100000 0 0122 244555
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... .||+++-|--.+....+.++.|.. .+=++|+...|... |.+..+.|.++|+.++.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 542 489988776554333333344432 13367888888764 33677889999998874
No 348
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.31 E-value=0.13 Score=56.42 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.++-|+|.|-+|++++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+-.-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998887654211 1122222222211 1267888777766311
Q ss_pred --HH-HHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEE
Q 010652 87 --DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 --~~-vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v 129 (505)
+. -+. ...++++.+++|..-... .| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEe
Confidence 10 011 123667889999876543 33 34444566665444
No 349
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.30 E-value=0.18 Score=47.15 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=46.6
Q ss_pred cEEEEcccHHHHHHHH--HHHhC----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcEE
Q 010652 8 RIGLAGLAVMGQNLAL--NVAEK----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~--~La~~----G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~advI 76 (505)
||+|||.|..-.+.-. .+... +-+|.++|+++++++.... ...+ .+ ..++..++|.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 7999999987766432 23322 3378999999998763321 1110 00 2367889999999987 9999
Q ss_pred EEecCCC
Q 010652 77 IILVKAG 83 (505)
Q Consensus 77 il~vp~~ 83 (505)
|..+-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9999665
No 350
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.28 E-value=0.21 Score=53.49 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
||.|||+|..|.+.|+.|+++|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997753
No 351
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.28 E-value=0.095 Score=51.12 Aligned_cols=84 Identities=15% Similarity=0.301 Sum_probs=56.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
+++-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+..... . +++ +..-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----------------G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----------------C---ceEEEEECCCCCH
Confidence 45888886 99999999999999999999999998766655432100 0 222 22223344
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++.....+-+++|++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 45566666665555556788887654
No 352
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.27 E-value=0.19 Score=48.72 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|..|..+|.+|+..|. +++++|.+.=....+..+... ....+-.-+....+-++.+ .+++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 4689999999999999999999998 688998765332222211000 0000000011222222222 145555555543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ..+ .+.+.+..-|+||++.-. +..-..+.+.+.+.++.++.+++.|
T Consensus 100 i-~~~---~~~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 L-DAE---NAEELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred e-CHH---HHHHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 111 222333456899988664 4444445566677788888877654
No 353
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.27 E-value=0.07 Score=52.30 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=71.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-+|..+|.+|++.|. +++++|.+.-....+..+.... ...+-.-+....+.+.++ .+++-+..++..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK 102 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 3589999999999999999999997 6888988764433332211000 000000011122222222 266666666543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-. .+ .+...+..-|+|||++-.. .....+.+.+.+.++.|+.+.+.|
T Consensus 103 i~-~~---~~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LD-DA---ELAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CC-HH---HHHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 2233345678999987653 444445566677788888765544
No 354
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.24 E-value=0.19 Score=49.33 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcE-EEEeCChhHH-----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPI-SVYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G-~~V-~v~dr~~~~~-----~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
++||+|+|+ |.||+.+.+.+.+.. +++ ..++|.+... .++...+ .+++...+++...... +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999999776 554 4678886532 1121111 1234555555544444 99998
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~ 124 (505)
=...+ +.+...++-. +..+..+|-++|+......+..+.+.++
T Consensus 75 DFT~P-~~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTP-EATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCc-hhhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 76644 3444444333 3456667778888776666655555554
No 355
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.17 E-value=0.13 Score=49.46 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+..... +. . +++.+ .-+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--------------~~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR--------------AA--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH--------------hc--C---CceEEEEccCCCH
Confidence 57999985 999999999999999999999999887655443211 00 0 22222 223333
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 44566666665544455677776543
No 356
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.17 Score=49.73 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|.....+++-|.|. |.+|..+++.|+++|++|++.+|++++.+++.+... .. ...+..-
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----------------ER---ARFIATD 60 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Ce---eEEEEec
Confidence 54333356777775 999999999999999999999999877665543210 00 1222223
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+...++.+++.+.....+=+++|++..
T Consensus 61 l~~~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 61 ITDDAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 33444555566665554444466666544
No 357
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.081 Score=52.99 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++.... .++++..++ +|+||.++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 7899999999999999999886331 356666666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 23577999999998764
No 358
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.14 Score=49.69 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 68 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPD 68 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHH
Confidence 356888886 99999999999999999999999987655544321100 000 122223334445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++.+++.+.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555555788887664
No 359
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.08 E-value=0.08 Score=53.28 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++..++ ||+||.++.-+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1356666666 9999999987643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 23577999999998765
No 360
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.06 E-value=0.24 Score=57.26 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=67.6
Q ss_pred CCcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEe--c
Q 010652 6 LSRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~l-A~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~--v 80 (505)
+.+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+. .+|+||.+ +
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcC---CCCEEEECCCc
Confidence 3469999999999997 9999999999999997643 334443332 2222 12223333 38988874 2
Q ss_pred CCCc-hHHHHH---------HHHhhccCC--CCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 81 KAGS-PVDQTI---------AALSEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
|... .+.... -+++..+.+ ..|-|.+||+...++.-+...|...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 222222 123222222 346677777777777666777777664
No 361
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.06 E-value=0.19 Score=53.44 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChhHHHHHHHhhcccC--------CC-CeeeeCCHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISV--------YN---RTTSKVDETLDRAHREG--------QL-PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v--------~d---r~~~~~~~~~~~~~~~g--------~~-~i~~~~s~~e~ 66 (505)
.+|+|=|.|++|...|+.|.+.|.+|++ || .+.++++.+.+.....+ .+ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999988 88 77776543332211110 00 11111 23344
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +||+.+-|--.+....+.++.|... .=++|+...|. | .|.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 332 4888887765543333333444321 34688888888 4 555677888999998874
No 362
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.089 Score=52.58 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++... +.++++.+++ +|+||.++..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999996 789999999999999999988532 1356666666 9999999987653
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.|...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 13477999999998765
No 363
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.03 E-value=0.15 Score=52.30 Aligned_cols=39 Identities=13% Similarity=0.368 Sum_probs=33.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~~ 45 (505)
|+|.|.|. |.+|+.++..|+++ |++|.+.||+.++...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 58999996 99999999999986 79999999987654443
No 364
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.02 E-value=0.17 Score=49.24 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=54.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|-|+|. |..|..++..|+++|++|.+.+|++++.+.+..... .. ...+-.-+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 46889985 999999999999999999999999887665543210 00 2223333344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+.....+=+++|....
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555544566666554
No 365
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.01 E-value=1 Score=46.81 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=94.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCC---------------Ce---eeeCCHHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQL---------------PL---TGHYTPRDFV 67 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~---------------~i---~~~~s~~e~v 67 (505)
.+|-|+|.|..+..+|..+.+++. +|-+.+|...+-+++.+.....+.. .. ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 579999999999999999998876 6999999887776665433221000 00 1123444544
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcC--CeEEc-------CCCCCCh
Q 010652 68 LSIQRPRSVIILVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLG-------MGVSGGE 137 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~g--i~~v~-------~pvsgg~ 137 (505)
.. =|.+|+|||++ +-.+|+++|-+ .|..=+.||-.|... +...-+...+.+.| +.++. .-++.++
T Consensus 82 g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred cc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 44 79999999996 66778877654 233334555555544 23333444455443 22222 2233333
Q ss_pred hhh---hcCC--cccCCC---CHHHHHHHHHHHHHhhccc
Q 010652 138 EGA---RHGP--SLMPGG---SFEAYNNIRDILQKVAAQV 169 (505)
Q Consensus 138 ~~a---~~G~--~i~~gg---~~e~~~~v~~ll~~iga~~ 169 (505)
... ..|. .+++|. +....+++..+++.++.+.
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 221 1222 345552 4456778888998888553
No 366
>PRK07236 hypothetical protein; Provisional
Probab=95.00 E-value=0.033 Score=58.29 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.2
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|..++.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4444567899999999999999999999999999998864
No 367
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.00 E-value=0.069 Score=52.25 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
+++|.|+|. |.+|+.++..|+++||+|++..|++++.....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 58 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence 468999995 99999999999999999999999988765443
No 368
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.99 E-value=0.095 Score=52.39 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=58.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|++++... .++++..++ ||+||.++.-+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 57999995 7899999999999999999987331 355666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 32 23577999999999764
No 369
>PRK08223 hypothetical protein; Validated
Probab=94.99 E-value=0.12 Score=51.89 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. ++.++|.+.=....+..+... ....+-.-+...++.+.++. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4689999999999999999999997 688888775333333222100 00000011122233333221 44444444432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC-hhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~-~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ..+-++++ +..-|+|||++... ......+.+.+...++.++.+.+.|
T Consensus 106 l-~~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 I-GKENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred c-CccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 1 11122333 33558999987654 2334445566677788888765544
No 370
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.96 E-value=0.19 Score=51.00 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=57.4
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc---CCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc-
Q 010652 11 LAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE---GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS- 84 (505)
Q Consensus 11 iIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~---g~~~i~~~~s~~e~v~~l~~advIil~vp~~~- 84 (505)
|||+|.+|.++|..|+..+. ++.++|++.++++......... ...+.+...+..+..++ +|+||++.-.+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998886 6999999887644332211000 00022333232333333 999999764321
Q ss_pred --------------hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 --------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 --------------~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.++++.+.+..+ .+..++|..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 144444566665 466677777753
No 371
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.95 E-value=0.089 Score=52.44 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=58.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.+++..|.++|..|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999999743 1356666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 13477999999998654
No 372
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.089 Score=52.48 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=56.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||-+ ..|.++|..|...|..|++++++.. ++++.++. +|+||.+++-...
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 9999999999999999999986532 34445555 9999999975432
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. .+. +++|.+|||.+...
T Consensus 209 v~---~~~---vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---PDM---VKPGATVIDVGINQ 227 (279)
T ss_pred cC---HHH---cCCCcEEEEeeccc
Confidence 22 222 58999999998654
No 373
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.093 Score=52.42 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999988532 1255666666 9999999988654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 13577999999998754
No 374
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.91 E-value=0.085 Score=54.06 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=57.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCC
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~-------~V~v~dr~~~~--~~~----~~~~~~~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
+|+|||+ |.+|..+|..|+..|. ++.++|++++. .+. +....... ...+....+..+.+++ +
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~---a 76 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTD---V 76 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCC---C
Confidence 6999999 9999999999998654 59999996542 211 11100000 0012222233333343 9
Q ss_pred cEEEEecCCC----c-----------hHHHHHHHHhhccCCCCEEEeCCCCChhhH
Q 010652 74 RSVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 74 dvIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~t 114 (505)
|+||++.-.+ . .++++.+.+.++..+..++|-.|| |-++
T Consensus 77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN--PvDv 130 (324)
T TIGR01758 77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN--PANT 130 (324)
T ss_pred CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC--cHHH
Confidence 9999876332 1 133344555555445666766664 4444
No 375
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.24 Score=47.27 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++..+..+.... .. .+++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHHH
Confidence 46888885 9999999999999999999999998765544322100 01 3344444555556
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+-+.|++....
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 666666666555455677776543
No 376
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.89 E-value=0.36 Score=51.33 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=51.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~-----G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.. ...+...|+.. +-+|.++|+++++.+.... .... .| ..++..+++.++++++ +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999884 33455555543 3579999999987654221 1100 01 1367888999999987 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998665
No 377
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.88 E-value=0.31 Score=48.97 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCCCCCcchhh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+....+..++|++.+.++ +++|.+++.++.+.+ .-+|.+++.....+... +. ++.
T Consensus 163 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (291)
T TIGR01505 163 GDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KPG 229 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CCC
Confidence 677899999999999999999999999874 449999999999876 45777776653332221 11 122
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|.- .-....++.+...|-+.|+|.|...++..+|....
T Consensus 230 f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 267 (291)
T TIGR01505 230 FRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTLR 267 (291)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 222 23345678888999999999999999998776543
No 378
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.17 Score=48.95 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=54.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|+|. |.+|..++..|++.|++|.+.+|++++.+.+.+.... .-.. .+++..=+.+...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 70 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAADLADPAS 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 56888885 9999999999999999999999998876655432110 0000 2222223333344
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+-+.||++...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555566555544455677776544
No 379
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.85 E-value=0.28 Score=45.68 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=34.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
|++.|+|..-||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888987668888999999999999999999887665543
No 380
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.85 E-value=0.11 Score=53.73 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChhHHHHHHHhhc------ccCC-CCeeee-CCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTTSKVDETLDRAH------REGQ-LPLTGH-YTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G-~~V~v~-dr~~~~~~~~~~~~~------~~g~-~~i~~~-~s~~e~v~~l~~adv 75 (505)
+||+|+|+ |.||..+++.|.++. ++|... +++++.-+.+.+... ..+. ..+... .+++ ... ++|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~Dv 76 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPV-ASK---DVDI 76 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHH-Hhc---cCCE
Confidence 47999995 999999999999877 577655 554332111111100 0000 011111 1222 223 4999
Q ss_pred EEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
|++++|.+ ....+...+. ..|..+||.|..+
T Consensus 77 Vf~a~p~~-~s~~~~~~~~---~~G~~VIDlsg~f 107 (341)
T TIGR00978 77 VFSALPSE-VAEEVEPKLA---EAGKPVFSNASNH 107 (341)
T ss_pred EEEeCCHH-HHHHHHHHHH---HCCCEEEECChhh
Confidence 99999997 3344444332 4688899998764
No 381
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.84 E-value=0.17 Score=49.25 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=54.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+... +. . .+...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~--------------~~--~-~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK--------------GQ--G-LSAHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hc--C-ceEEEEEccCCCHHH
Confidence 46888885 999999999999999999999999877655443211 00 0 001222223344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++...+.+=+++|++...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665555555677776543
No 382
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.84 E-value=0.22 Score=48.56 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.+.... . ...+-.-+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGP-----------------A---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEccCCCHHH
Confidence 45778875 9999999999999999999999998876665432100 0 1122222334445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+...+.+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555555567776544
No 383
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.19 Score=49.84 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~ 63 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFD 63 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHH
Confidence 346888885 999999999999999999999999887665543210 00 122333344444
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+...++++.....+=++||++...
T Consensus 64 ~~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 64 AIDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 5666666665554444677776543
No 384
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.81 E-value=0.25 Score=48.47 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..++..|+++|++|.+.+|++++.+++.+... .. ...+..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 45777775 889999999999999999999999887766543210 00 2223333344445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665555455677776553
No 385
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.1 Score=52.16 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=57.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++.+..+. +|+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 57999995 7899999999999999999986431 245555565 9999999988654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 ITA------DMVKEGAVVIDVGINH 233 (282)
T ss_pred CCH------HHcCCCcEEEEecccc
Confidence 321 3477999999998754
No 386
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.78 E-value=0.56 Score=51.51 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=50.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----cC-----CCCeee--eCCHHHHHhhcCCCc
Q 010652 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EG-----QLPLTG--HYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~-----~g-----~~~i~~--~~s~~e~v~~l~~ad 74 (505)
.|.|.|. |.+|..++..|++.|++|.+++|+.++.+.+.+.... .| +..+.. ..+.+++.+.+.++|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4778885 9999999999999999999999999887665432100 00 001111 224455555566799
Q ss_pred EEEEecCC
Q 010652 75 SVIILVKA 82 (505)
Q Consensus 75 vIil~vp~ 82 (505)
+||.++..
T Consensus 162 iVVn~AG~ 169 (576)
T PLN03209 162 VVICCIGA 169 (576)
T ss_pred EEEEcccc
Confidence 99988643
No 387
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.11 Score=51.95 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=57.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++.... .++++.... ||+||.++.-+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 7899999999999999999887432 245666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.|...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 13477999999998764
No 388
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.76 E-value=0.075 Score=54.51 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
..+|-|||+|.||.-.+.+|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3589999999999999999999996 5999999975
No 389
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.74 E-value=0.11 Score=52.27 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++..++ ||+||.++.-+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7899999999999999999987431 256666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 13467899999998764
No 390
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.74 E-value=0.25 Score=52.70 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=50.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010652 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgiIGlG~m-G~~lA~~La~~-----G~~V~v~dr~~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||.|.. +..+...|+.. +-+|+++|+++++.+.... .-.. .| ..++..+++.+|+++. +|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999885 22344445433 3579999999987654321 1100 01 1367888999999887 999
Q ss_pred EEEecCCC
Q 010652 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+-.+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998665
No 391
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.70 E-value=0.26 Score=51.61 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=68.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-.|..++.+|++.|. +++++|++.-....+..+... ....+..-.....+.+..+ .+++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999999999999999998 699999874322222211000 0000000011122222221 145544444432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ....++.+ +..-++|||++-... .-..+.+.+.+.++.|+.+.+.|
T Consensus 214 ~-~~~~~~~~---~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 V-TSDNVEAL---LQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-ChHHHHHH---HhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 1 11222333 345689999877643 32335566677788888876654
No 392
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.70 E-value=0.04 Score=57.68 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999999999999864
No 393
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.69 E-value=0.11 Score=51.87 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=57.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||- ..+|.++|..|.++|..|++++... .++++.++. +|+||.++..+..
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 57999995 8899999999999999999986321 255566666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 13467999999998654
No 394
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.68 E-value=0.33 Score=50.45 Aligned_cols=124 Identities=14% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..++.+|+..|. +++++|.+.=....+..+-.. ....+-.-+....+-+.++ .+++-+...+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEee
Confidence 3689999999999999999999998 688998875322222211000 0000000011122222221 266767666543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-..+ .....+..-|+|||++-.. ..-..+...+.+.++.|+.+.+.|
T Consensus 107 i~~~----~~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LTWS----NALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cCHH----HHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 2111 2223344568999997653 232334455667788888766554
No 395
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.67 E-value=0.26 Score=53.11 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=75.5
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc--------c------cCC-CCeeeeC
Q 010652 7 SRIGLAGL----------AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH--------R------EGQ-LPLTGHY 61 (505)
Q Consensus 7 ~~IgiIGl----------G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~--------~------~g~-~~i~~~~ 61 (505)
.+|+|+|+ ..-...++..|.+.|.+|.+||.--+..+.....+. . .+. .++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999998 347788999999999999999986433211000000 0 000 0245667
Q ss_pred CHHHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 62 TPRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
++.++++. +|+|++++..+ ..+.. ++.+.+.+.+..+|+|+-+.... +.+.+.|+.|++.+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 77777776 99999999885 34432 35555556555689999988742 22334588887754
No 396
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.23 Score=49.31 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
+++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 346888887 99999999999999999999999988766554
No 397
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.44 Score=51.23 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--CCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~ 83 (505)
..+|+|+|+|.-|.+.++.|. +|.+|+++|.+++....+.+.... .... ....+.... +|+||.+- |..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~---~d~vV~SPgI~~~ 76 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIA-ALSDSRWQN---LDKIVLSPGIPLT 76 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceec-cCChhHhhC---CCEEEECCCCCCC
Confidence 358999999999999999999 599999999664433222211000 1111 112233333 88887743 332
Q ss_pred ch-HHHHH---------HHHh-hccCC-CCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SP-VDQTI---------AALS-EHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~-v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
.+ +.... -+++ ..... .-|-|.+|++...+|.-+...+...|....-.+..|
T Consensus 77 ~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 77 HEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred CHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 22 22221 1222 22222 246666777777666666777777776544333333
No 398
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.64 E-value=0.065 Score=55.31 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=55.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEecCC
Q 010652 8 RIGLAG-LAVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgiIG-lG~mG~~lA~~La~~G~~V~---v~dr~~~~~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+||| .|..|..|.+.|.+++|++. ++.++...-+.+...+. .+... .+.+++ + .+|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~---~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-E---GIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-c---CCCEEEECCCH
Confidence 689999 59999999999999988743 34343322111111111 12222 133333 3 39999999998
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+ ...+....+. ..|..|||.|+.+
T Consensus 72 ~-~s~~~a~~~~---~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKAA---KCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHHH---HCCCEEEECCHHH
Confidence 6 3444444443 4678999998753
No 399
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.63 E-value=0.17 Score=48.88 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
|...+.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3333446798998 699999999999999999999999987655444
No 400
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.62 E-value=0.67 Score=46.07 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=58.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhc---CCCcEEEEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI---QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l---~~advIil~vp~ 82 (505)
.+|.|+|.|.+|...+..+...|.+ |++.++++++.+.+.+.+... +....+..+.+..+ ...|+++-++..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 3699999999999999888889987 888899998877666544321 11111222222222 247888888765
Q ss_pred CchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+..++. ....+.++-.++..+.
T Consensus 198 ~~~~~~----~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRA----CLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHH----HHHHhcCCCEEEEecc
Confidence 433333 3344555555555543
No 401
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.61 E-value=0.12 Score=52.02 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.+||..|.++|..|++++.. +.++++.++. +|+||.++.-+..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999999642 1356667776 9999999976532
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 23577999999998764
No 402
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.61 E-value=0.21 Score=51.17 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHH
Q 010652 9 IGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLD 47 (505)
Q Consensus 9 IgiIGlG~mG~~lA~~La~~-G~~V~-v~dr~~~~~~~~~~ 47 (505)
|||+|+|.+|+..++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56655 56877776555543
No 403
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.23 Score=48.51 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++|-|.| .|.+|..++..|+++|++|++.+|++++.+++.+.... .. . ...+-+-+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---------~~------~---~~~~~~Dl~~~~ 63 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK---------AA------R---VSVYAADVRDAD 63 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc---------CC------e---eEEEEcCCCCHH
Confidence 35788887 69999999999999999999999998876655432100 00 1 233333344445
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
.+++.++++.....+-+++|.+...
T Consensus 64 ~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 64 ALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 5666666666555545778876543
No 404
>PRK08017 oxidoreductase; Provisional
Probab=94.59 E-value=0.23 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46999998 99999999999999999999999988765543
No 405
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.28 Score=47.76 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
++|-|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888886 899999999999999999999999887766554
No 406
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.57 E-value=0.22 Score=49.37 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=58.7
Q ss_pred cCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCC
Q 010652 4 SALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 4 ~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+++.+-|-|+ +-+|..+|+.|+++||+|.+..|+.++++++.++.... . . ++ ++++-+=+.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~-----~---~----v~----v~vi~~DLs~ 67 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK-----T---G----VE----VEVIPADLSD 67 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh-----h---C----ce----EEEEECcCCC
Confidence 34456888896 89999999999999999999999999999887654321 0 0 01 3344333444
Q ss_pred CchHHHHHHHHhhccCCCCEEEeC
Q 010652 83 GSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
.+.+..+.+++.....+=+++|+.
T Consensus 68 ~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 68 PEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEC
Confidence 456666666666543333566654
No 407
>PRK06194 hypothetical protein; Provisional
Probab=94.55 E-value=0.27 Score=48.83 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE-
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII- 78 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil- 78 (505)
|.....++|-|.| .|-+|..++..|+++|++|++.||+.+..++..+.... .. .++.++
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~ 61 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVR 61 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEE
Confidence 4432335677887 49999999999999999999999998766554432110 01 233222
Q ss_pred -ecCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 79 -LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 -~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
=+.+...++.+++++.....+=++||++...
T Consensus 62 ~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 62 TDVSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2333345666666665555455777776654
No 408
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.54 E-value=0.38 Score=47.31 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
..++-|+|.|..+.+++......||+|+++|.+++........+. .......+++....+...+.|+++.-+. .
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h-~ 173 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDH-A 173 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCCh-H
Confidence 368999999999999999999999999999977652211110000 1123345666666554467777777554 3
Q ss_pred HH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 86 VD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 86 v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
.| .++..+++..+..-+=+-+|. ....++.+.|.+.|+
T Consensus 174 ~D~~~L~~aL~~~~~~YIG~lGSr---~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 174 LDLELCHAALRRGDFAYFGLIGSK---TKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCH---HHHHHHHHHHHhcCC
Confidence 34 334555422222222222222 345555666666553
No 409
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.53 E-value=0.043 Score=57.81 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
No 410
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.51 E-value=0.25 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKG-----------FPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G-----------~~V~v~dr~~ 39 (505)
..+|.|||+|-.|..++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 468999999999999999999874 2889998664
No 411
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.50 E-value=0.31 Score=46.88 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=57.7
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|.+...+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+++..... .. ..++-.-
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPAN 60 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEcc
Confidence 4433345788888 5999999999999999999999999877665543210 00 2222222
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
+.+...++.+++++.+.+.+=+.||++...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 61 LSDRDEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344445666666666655555777777553
No 412
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.47 E-value=0.3 Score=47.80 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=55.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++-|.|. |.+|..+|..|+++|++|.+.+|++++.++..++.... .. ...+..-+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 47888885 88999999999999999999999988766554321100 00 1222233444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++++++...+.+=+++|....
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66667666665555567776543
No 413
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.47 E-value=0.23 Score=48.81 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+... ....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3689999999999999999999997 788998775333333221100 0000001111222222222 156666665543
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
-. ..- +...+..-++|||++-.. ..-..+.+.+.+.++.|+.+.+.
T Consensus 111 i~-~~~---~~~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 111 LD-DDE---LAALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred CC-HHH---HHHHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeec
Confidence 11 112 222344568999987643 33333555666778888876544
No 414
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.46 E-value=0.12 Score=52.31 Aligned_cols=81 Identities=11% Similarity=0.286 Sum_probs=53.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.||+|+|. |.+|.-|.+.|+++.+ |-+...+.++. + . ..+.+++.++ +|++|+++|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 47999996 9999999999999853 33222221110 0 0 1244555555 89999999997 4
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+....+. ..|..|||.|+.+
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH
Confidence 444444442 4688999999754
No 415
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.45 E-value=0.052 Score=56.83 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+...+.+|.|||.|..|..+|..|+++|++|.++|+.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 5444456899999999999999999999999999998753
No 416
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.44 E-value=0.56 Score=49.84 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=49.6
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQ-NLALNVAEK-----GFPISVYNRT-TSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~-~lA~~La~~-----G~~V~v~dr~-~~~~~~~~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|||.|||.|..-. .+...|+.. +-+|.++|++ +++++.... .... .+ ...+..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998644 344555542 3579999999 787643221 1100 01 1357788899999887 99
Q ss_pred EEEEecCCC
Q 010652 75 SVIILVKAG 83 (505)
Q Consensus 75 vIil~vp~~ 83 (505)
+||+++-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988544
No 417
>PRK06182 short chain dehydrogenase; Validated
Probab=94.44 E-value=0.32 Score=48.00 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=53.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|.|. |.+|..++..|++.|++|.+.+|++++.+++...+ .+.+..-+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------------------~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-----------------------VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-----------------------CeEEEeeCCCHHH
Confidence 56888885 99999999999999999999999988765443211 2233334444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+......=+++|++..
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666554444466776654
No 418
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.15 Score=50.99 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~--~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++.|||- ..+|.+||..|.+ ++..|+++... +.++++..+. +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999995 7899999999998 68899988643 1356666676 99999999876
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
..+. ...+.+|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 5332 23578999999998764
No 419
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.39 E-value=0.45 Score=47.70 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=80.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHH-HHhcCCCCCCCcch
Q 010652 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVD 403 (505)
Q Consensus 325 ~~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~-~~~~~~~~~~ll~~ 403 (505)
.+.++.+|+++|=+-.+.+++++|.+.+-+++ + +|.+.+.++-++| --+|+.++.-.. ..+++ .+
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~----G--ld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~-------~~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA----G--LDPDVVLEVISGG-AAGSWILENYGPRMLEGD-------FS 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhcc-ccCChHHHhhcchhhcCC-------CC
Confidence 37899999999999999999999999998864 3 9999999999887 347888776322 22222 12
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
|-| .++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 230 p~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 230 PGF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred cch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 333 2334556778889999999999999999999777543
No 420
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.15 Score=50.96 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++... +.++++..++ ||+||.++.-+..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 789999999999999999998533 1355666666 9999999977543
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 13477999999998764
No 421
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.36 E-value=0.25 Score=47.37 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=53.0
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~-~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|...++++|-|+| .|.+|..++..|+++|++|.+..++.+ ..+.+..... +.-.. ..++..
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~ 63 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVE--------------ALGRR---AQAVQA 63 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH--------------hcCCc---eEEEEC
Confidence 5544456799998 499999999999999999887655544 3332222110 00000 223333
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
-+.+...++.+++++...+.+=+.||.+..
T Consensus 64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 64 DVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 334444566666666554444567776554
No 422
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.35 E-value=0.31 Score=48.13 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4688888 5999999999999999999999999887666543210 01 2233333444445
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++.+...+=++||++...
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666655544444677776543
No 423
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.32 E-value=0.32 Score=48.86 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=75.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHHHHHHHhcCCCC-CCCcc--
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLVV-- 402 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~i~~~~~~~~~~-~~ll~-- 402 (505)
+.++.+|.++|.+.++.+..++|++.+.++ .++|..++.++.+.+. -+|+.++.... .+.. +..+.
T Consensus 160 g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~ 228 (288)
T TIGR01692 160 GAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPASN 228 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCC----CccccccccccC
Confidence 678899999999999999999999999874 3399999999999763 35655442211 0000 00000
Q ss_pred --hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010652 403 --DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 403 --~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (505)
++.| .+.-...+++.+...|-+.|+|+|....+...|....
T Consensus 229 ~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 271 (288)
T TIGR01692 229 GYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFD 271 (288)
T ss_pred CCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 1223 2234456778999999999999999999888776433
No 424
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.32 E-value=0.15 Score=51.04 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|++++.. +.++++..++ +|+||.++.-+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 57999995 789999999999999999998632 1356666666 9999999977643
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+.+|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 32 13477999999998653
No 425
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.29 E-value=0.26 Score=47.83 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=57.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++...... .. .+...+..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~-~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK----------------AG-GKAIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------------cC-CcEEEEEcCCCCHHH
Confidence 4688898 59999999999999999999999998876665433210 00 002233334445555
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+.....+-++||++..
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666665555677777654
No 426
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.26 Score=49.82 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEE
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~---s~~e~v~~l~~advI 76 (505)
|..++...+-|+|+ |..|.-+|..|++.|.+-.+-.||.++++.+....... ...-.+. ..++++. ..++|
T Consensus 1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~--~~~~p~~~p~~~~~~~~---~~~VV 75 (382)
T COG3268 1 MPMEREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPE--AAVFPLGVPAALEAMAS---RTQVV 75 (382)
T ss_pred CCCCcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCcc--ccccCCCCHHHHHHHHh---cceEE
Confidence 44455567999996 99999999999999999989999999999888754321 1122223 3344444 48999
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChh--hHHHH-HHHHHHcCCeEEc
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--NTERR-IHEASQKGLLYLG 130 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~t~~~-~~~l~~~gi~~v~ 130 (505)
+.||-+-. ..-..-+...+..|.-.+|.+....- ...+. .+..++.|+..+.
T Consensus 76 lncvGPyt--~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~ 130 (382)
T COG3268 76 LNCVGPYT--RYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIP 130 (382)
T ss_pred Eecccccc--ccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEec
Confidence 99995532 21122233445678899999887532 23333 3344566777665
No 427
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.38 Score=46.40 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|-|.|. |.+|..++..|+++|++|++.+|++++.++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 56888885 99999999999999999999999977665544
No 428
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.23 E-value=0.14 Score=52.92 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCccCCCcEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEe--CChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCC
Q 010652 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFP---ISVYN--RTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQR 72 (505)
Q Consensus 1 M~~~~~~~IgiIGl-G~mG~~lA~~La~-~G~~---V~v~d--r~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~ 72 (505)
|+.. .++|||||+ |.+|.-|.+.|.+ ..++ +..+. ++..+.-.+... .+.. ..+++++ .+
T Consensus 1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-------~l~v~~~~~~~~-~~--- 68 (347)
T PRK06728 1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-------EIIIQEAKINSF-EG--- 68 (347)
T ss_pred CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-------ceEEEeCCHHHh-cC---
Confidence 5433 368999997 9999999999995 6677 44443 222221111110 1222 1244444 44
Q ss_pred CcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.|++|+++|.+ ...++...+. ..|..|||.|+.+
T Consensus 69 ~Divf~a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFSAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 89999999986 4555544433 4689999998765
No 429
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.22 E-value=0.37 Score=48.70 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=75.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhHHHH-HHHHHhcCCCCCCCcchh
Q 010652 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDR-IKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~ai~~~~i~~yaqg~~ll~~as~~~~w~l~l~~i~~iW~~GciIrs~lL~~-i~~~~~~~~~~~~ll~~~ 404 (505)
+.++-+|.+.|-+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+.. ....+.+++ . ++
T Consensus 165 G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----~--~~ 231 (296)
T PRK15461 165 GMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGD----L--SP 231 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCC----C--CC
Confidence 6788999999999999999999999998853 399999999988763 33443332 211111111 1 23
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010652 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (505)
.| .++-...+++-+...|-+.|+|.|....+...|..-
T Consensus 232 ~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a 269 (296)
T PRK15461 232 AF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQA 269 (296)
T ss_pred Cc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 34 344556778999999999999999999998877643
No 430
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.22 E-value=0.51 Score=50.90 Aligned_cols=111 Identities=17% Similarity=0.085 Sum_probs=65.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-H---HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEec--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-K---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~-~---~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
.+|+|+|+|.-|.+.++.|.+.|.+|+++|.++. . ..++.+.+ .........+.+.. +|+||.+-
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~---~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAA------LLVETEASAQRLAA---FDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcC------EEEeCCCChHHccC---CCEEEECCCC
Confidence 5799999999999999999999999999995432 1 12332211 01112222333444 89988754
Q ss_pred CCCch-HHHHHH---------HH-hhc-cC-----CCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 81 KAGSP-VDQTIA---------AL-SEH-MS-----PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~~-v~~vl~---------~l-~~~-l~-----~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
|...+ ++...+ ++ ... .. ...|-|.+|++...++.-+...|...|.
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 33322 222211 22 111 21 2346667777777666666777776664
No 431
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.22 E-value=0.32 Score=50.43 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=59.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHHHHH-hhc--CCCcEEEEec
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFV-LSI--QRPRSVIILV 80 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~---s~~e~v-~~l--~~advIil~v 80 (505)
++.|+|+|.+|...+..+...|. +|++.|+++++++.+.+.+... ..... +..+.+ +.. ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999999888888885 6778899999988776633221 11111 111111 111 2478888888
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.... .+++....+.++-.++..+...
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEeccC
Confidence 7433 3444445555555555555443
No 432
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.57 Score=50.05 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhH--HHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEec-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~--~~~~~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v- 80 (505)
++|.|||+|..|.+.+..|.+. |++|+++|..+.. .+++. .+. .+... .+++. +.+ +|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~-----~~~~g~~~~~~-~~~---~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDV-----ELHSGGWNLEW-LLE---ADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCC-----EEEeCCCChHH-hcc---CCEEEECCC
Confidence 5799999999999999999988 6899999976532 22332 221 12222 23333 344 89887754
Q ss_pred -CCCc-hHHHHHH---------HHhh-ccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeE
Q 010652 81 -KAGS-PVDQTIA---------ALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~~-~v~~vl~---------~l~~-~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|... .+....+ +++. .+....|-|.+|++...++.-+...+...|...
T Consensus 78 I~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 78 IALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 3322 2222221 3332 233334566667777666666667777766543
No 433
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.20 E-value=0.21 Score=49.75 Aligned_cols=102 Identities=14% Similarity=0.222 Sum_probs=54.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhccc-C-CCCeee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHRE-G-QLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~~~~~~~~~~~~~~-g-~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
.+|.|||.|.+-.........+ |..|..+|++++..+...+..... | ..++.+ +.+..++..+++..|+|+++.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999987765554444 456889999998765443211100 0 012333 3344444455666899999886
Q ss_pred CC---chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 82 AG---SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~---~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.+ .+=.++++.+...+++|..|+--+.
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 65 2346788999999999998887644
No 434
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.19 E-value=0.29 Score=47.64 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|.|. |-+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777775 899999999999999999999999887766554
No 435
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.18 E-value=0.3 Score=50.19 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=56.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
+.|-|.|. |-+|..++..|++.|++|.+.+|++++.+++.+..... . +++ +..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----------------G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 45777786 89999999999999999999999998877655432100 0 222 23334455
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
++++.+++.+.....+=|++|++..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5677777666655444477777654
No 436
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.16 E-value=0.16 Score=52.20 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=58.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999998532 1356666666 9999999977654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 32 13477999999998654
No 437
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.15 E-value=0.34 Score=47.25 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc
Q 010652 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++-|+|. |.+|..++..|+++|++|.+.+|+++..+++.+.... . . ..++..=+.+..
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-----------~---~~~~~~D~~~~~ 71 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----A-----------K---VTATVADVADPA 71 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----C-----------c---eEEEEccCCCHH
Confidence 357899985 9999999999999999999999998766554432110 0 0 122222223334
Q ss_pred hHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
.++.+++++.+.+.+-+.||++....
T Consensus 72 ~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 72 QVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 45556666655555557777765543
No 438
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.39 Score=47.37 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..++..|++.|++|++.+|++++.+.+...+ .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-----------------------FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-----------------------CeEEEeeCCCHHH
Confidence 35777775 99999999999999999999999987655443211 2222233344455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++.+.....+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444777776653
No 439
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.41 Score=46.72 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4688888 4999999999999999999999999988776654
No 440
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.10 E-value=0.17 Score=51.81 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=57.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|+++.... .++++..+. +|+||.++.-+..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7899999999999999999886321 245666666 9999999987654
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 32 23477999999998764
No 441
>PRK06185 hypothetical protein; Provisional
Probab=94.08 E-value=0.069 Score=56.13 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCccCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|...+..+|.|||.|..|..+|..|+++|++|+++|+++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4444557899999999999999999999999999998753
No 442
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.07 E-value=0.29 Score=50.16 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc----c---cCCC----------CeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH----R---EGQL----------PLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 17 mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~----~---~g~~----------~i~~~~s~~e~v~~l~~advIil~ 79 (505)
||..||..+..+|++|+..|.+..-++....+.. . .+.. +++...+..++ +.+|+++.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~----~~~dmviea 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGF----ANADMVIEA 76 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccc----cccceeccc
Confidence 8999999999999999999999765432211110 0 0000 12223333333 348999888
Q ss_pred cCCCchHH-HHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHc--CCeEEcCCCCCChhhhhcCCcccCCCCHHHHH
Q 010652 80 VKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYN 156 (505)
Q Consensus 80 vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~--gi~~v~~pvsgg~~~a~~G~~i~~gg~~e~~~ 156 (505)
|-.+-.++ +++.+|....++..++-..+|+.+.+...-.-...++ |.||.... ......--..-..++..+..
T Consensus 77 v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa----~~m~LlEii~~~~tS~~~iA 152 (380)
T KOG1683|consen 77 VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPA----HWMQLLEIILALYTSKLTIA 152 (380)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHH----HHHHHHHHHHhcCCCchHHH
Confidence 77665544 4446666655555555444444433322211111222 33333210 00000000000122333222
Q ss_pred HHHHHHHHhhcccCCCCcEEEeCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 010652 157 NIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWN 228 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~~~~~~~ 228 (505)
.+-..=..++ +.+..+|. ..|.++....+ -..+++..++...| .++.+++.+...+.
T Consensus 153 ~Ain~~~~~g------k~~vvVg~-c~gf~v~r~l~-------~y~~~~~~~l~e~g-~~p~~iD~~~t~fG 209 (380)
T KOG1683|consen 153 TAINGGSPAG------KLPVVVGN-CCGFRVNRLLP-------PYTIGLNELLLEIG-ADPWLIDSLITKFG 209 (380)
T ss_pred HHHhcccccC------CccEEecc-CCceEEEeccc-------HHHHHHHHHHHHcC-CCHHHHHHHHHhcC
Confidence 2222212222 43445555 44555433221 23367777788888 99999999876543
No 443
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.06 E-value=0.39 Score=47.63 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCccCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 M~~~~~~~-IgiIGlG---~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+..++.| +-|.|.+ -+|..+|+.|++.|++|.+.+|+.+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence 55444445 5555876 6999999999999999999998754
No 444
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.06 E-value=0.23 Score=48.79 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=69.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEE--------eCChhHHHHHHHhhcccCC----CC------eeeeCCHH-HH
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVY--------NRTTSKVDETLDRAHREGQ----LP------LTGHYTPR-DF 66 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~--------dr~~~~~~~~~~~~~~~g~----~~------i~~~~s~~-e~ 66 (505)
-+++.|-|.|.+|..+|+.|.+.|.+|.+. |.+.-.++++.+.....+. +. .... +.+ ++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~i 110 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PNDDEI 110 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHHCHG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-cccccc
Confidence 368999999999999999999999887654 5554445555442111110 00 1111 222 45
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhccCC-CCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
... +||+++-|--.+....+.+.. .+++ =++|+...|.... .+..+.|.++|+.++.
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 432 499999986554333333331 2222 3688888887653 3334489999998774
No 445
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.45 Score=46.02 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=35.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~ 48 (505)
.++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 3577777 59999999999999999999999999887766543
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.01 E-value=0.26 Score=49.81 Aligned_cols=107 Identities=15% Similarity=0.051 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCc--
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.++++++ +|+|+..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 579999998888999999999999999876543211 111 25667788887776 999999988631
Q ss_pred -hHHHH-------H-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcC
Q 010652 85 -PVDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 -~v~~v-------l-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~ 131 (505)
.++.. + ++++..+++|.+++ .+...+.. .+.+.++|+..++.
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~ 120 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVEL 120 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEE
Confidence 11111 1 45677788998555 45555542 24456889988764
No 447
>PRK14851 hypothetical protein; Provisional
Probab=94.01 E-value=0.33 Score=54.64 Aligned_cols=125 Identities=16% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|+|+|-+|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+.-.++.+.++ .+++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC
Confidence 3689999999999999999999997 67888866433222222110 00000000011122222222 156666666654
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~~~gi~~v~~pvsg 135 (505)
-. .+-++.+ +..-|+|||+......++ ..+.+.+..+++.++.+++.|
T Consensus 122 i~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 22 2223333 345689999987643333 345556677888888776544
No 448
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.99 E-value=0.1 Score=53.62 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEe--CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010652 5 ALSRIGLAGL-AVMGQNLALNVAEKGF---PISVYN--RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgiIGl-G~mG~~lA~~La~~G~---~V~v~d--r~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
..++|+|||+ |..|..|.+.|.++.| ++.... ++..+.-.+. +. .+... +++++. ++++|++|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~--~~-----~~~v~-~~~~~~--~~~~Dvvf~ 72 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFG--GK-----SVTVQ-DAAEFD--WSQAQLAFF 72 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEEC--Cc-----ceEEE-eCchhh--ccCCCEEEE
Confidence 4578999996 9999999999999654 444442 2222211111 10 12222 444432 123899999
Q ss_pred ecCCCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
++|.+ ...++...+. ..|..|||.|..+
T Consensus 73 a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 73 VAGRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CCCHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 99986 3444444443 4689999998754
No 449
>PRK08643 acetoin reductase; Validated
Probab=93.99 E-value=0.3 Score=47.51 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=55.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++....... ... ...+-.-+.+...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 65 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--------------GGK---AIAVKADVSDRDQ 65 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCe---EEEEECCCCCHHH
Confidence 3566776 589999999999999999999999987766554321100 000 1122223444456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 66 VFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 667777776655555777777654
No 450
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.086 Score=54.06 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=47.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEE---EEecCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSV---IILVKA 82 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advI---il~vp~ 82 (505)
++|||||-|..|+.|+..-.+-|++|.+.|.+++.-....... .+.. .++++++.+-.++||+| |.-||.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~------~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADR------VIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccc------eeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 5799999999999999999999999999998887644333221 1222 23344333322349998 445555
No 451
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.2 Score=50.12 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++.|||- ..+|.++|..|.++ +..|+++... +.++++.++. +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999995 78999999999988 7788887532 1356666666 999999997
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-+..+. ...+.+|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 764332 23577999999998764
No 452
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.96 E-value=0.4 Score=50.65 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCcEEEEcccHHHHHHHHH--HHh----CCCcEEEEeCChhHHHH-------HHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010652 6 LSRIGLAGLAVMGQNLALN--VAE----KGFPISVYNRTTSKVDE-------TLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~--La~----~G~~V~v~dr~~~~~~~-------~~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
+.||+|||.|..+.+.-.- |.+ .+.++.++|.++++.+. +.++... ..++..++|.+++++.
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~--~~kv~~ttd~~eAl~g--- 77 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA--PVKVEATTDRREALEG--- 77 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC--CeEEEEecCHHHHhcC---
Confidence 4689999999988765322 222 24579999999988652 2222111 1257889999999987
Q ss_pred CcEEEEecCCCc-----------------------------------hHHHHHHHHhhccCCCCEEEeCCCCChhhHHHH
Q 010652 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 73 advIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~ 117 (505)
+|+|+.++-.|. .+-+.++.+.. +.|+..+++-+|-....|+..
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~-~~P~Aw~lNytNP~~~vTeAv 156 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEK-VCPNAWMLNYTNPAAIVTEAV 156 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHH-hCCCceEEeccChHHHHHHHH
Confidence 999999985542 12222233333 447888888888776667666
Q ss_pred HHHHHHcCCeEEc
Q 010652 118 IHEASQKGLLYLG 130 (505)
Q Consensus 118 ~~~l~~~gi~~v~ 130 (505)
.+... .+..++
T Consensus 157 ~r~~~--~~K~VG 167 (442)
T COG1486 157 RRLYP--KIKIVG 167 (442)
T ss_pred HHhCC--CCcEEe
Confidence 65444 234444
No 453
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.38 Score=47.80 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EE
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VI 77 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Ii 77 (505)
|.....+.+-|.| .|-+|..+|..|+++|++|.+.+|++++.+++.+.... .. .++ +-
T Consensus 1 ~~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------------~~---~~~~~~~ 61 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------------EG---FDVHGVM 61 (275)
T ss_pred CCCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CeEEEEe
Confidence 4442333466666 69999999999999999999999998776654432110 00 222 22
Q ss_pred EecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
.=+.+...++.+++++.....+=+++|+...
T Consensus 62 ~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 62 CDVRHREEVTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 2333444566666666655545577777654
No 454
>PRK07877 hypothetical protein; Provisional
Probab=93.90 E-value=0.21 Score=56.42 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~--~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|+|+| +|+..|..|++.|. +++++|.+.=....+..........+..-....++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 4689999999 89999999999994 7899887652222222110000000000011222223222 266777777765
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsgg 136 (505)
- ..+.+++++ ..-|+|||++-.. ..-..+.+.+.++++.++.+...+|
T Consensus 185 i-~~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 L-TEDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred C-CHHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3 233444444 3458999998764 3333445566677888776554444
No 455
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.88 E-value=0.18 Score=50.06 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=58.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG-~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||-+ .+|.+|+..|..+++.|++++... .++.+..++ +|+++.++--+..
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 579999974 689999999999999999997442 255555665 9999999976544
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCCCh
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~~~ 111 (505)
++ .+.+.+|.++||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 43 356789999999988754
No 456
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.86 E-value=0.09 Score=40.81 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 11 iIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|.-|...|..|+++|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
No 457
>PRK14852 hypothetical protein; Provisional
Probab=93.83 E-value=0.24 Score=57.29 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=73.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|-+|..++.+|+..|. ++++.|-+.=....+..+.. .....+-.-....++.+..+ .|++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3689999999999999999999997 67888766533333322110 00000001112223333322 266777777664
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhH-HHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t-~~~~~~l~~~gi~~v~~pvsg 135 (505)
- ..+.++++. ..-|+|||+......++ ..+.+.+.+.++.++.+++.|
T Consensus 411 I-~~en~~~fl---~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 V-AAETIDAFL---KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred C-CHHHHHHHh---hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 2 233344443 34589999887654333 344556677889888876654
No 458
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.83 E-value=0.27 Score=51.78 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 4689999999999999999999998 68899877533322222110 00000000011112222222 156666555442
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
-..+ -..+ .+..-++|||++-.. ..-..+.+.+...++.|+.+.+.|
T Consensus 121 i~~~-~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPS-NAVE---LFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChh-HHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1111 1222 344558999987653 333334556667788888765554
No 459
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.38 Score=49.36 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~ 83 (505)
++|-|.|. |-+|..+++.|+++|++|++.+|++++.+++.++.... . +++ +..=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCH
Confidence 35777775 99999999999999999999999988776654421100 0 222 22333444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++.+++.+...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 56677777776656555788876543
No 460
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.80 E-value=0.072 Score=56.10 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999753
No 461
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.80 E-value=0.61 Score=48.75 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. +++++|.+.=....+..+-. .....+..-+....+.+..+ .+++-+...+..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeee
Confidence 3589999999999999999999997 79999987533222221100 00000000011222222222 155555555542
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvs 134 (505)
- ..+.+.+ .+..-|+|||++-.. ..-..+.+.+...++.++.+.+.
T Consensus 120 i-~~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~ 165 (370)
T PRK05600 120 L-TAENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVL 165 (370)
T ss_pred c-CHHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEe
Confidence 1 1222223 344568999987763 33333445556678877776554
No 462
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.80 E-value=0.41 Score=46.57 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|++++|+++..+++.+..... -.. .+.+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--------------GGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEccCCCHHH
Confidence 46778875 99999999999999999999999987765544321100 000 2233333444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
+..+++++.....+=+.+|.+..
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666654444466666544
No 463
>PRK06753 hypothetical protein; Provisional
Probab=93.78 E-value=0.073 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
No 464
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.77 E-value=0.8 Score=46.11 Aligned_cols=106 Identities=17% Similarity=0.019 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch-
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|+|||--.=-..+++.|+++|++|.+|.-.... ..+. ++..+.+.++.++. +|+||+++|-...
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~~---------~~~~~~~~~~~~~~---~~~~i~p~~~~~~~ 68 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGFT---------GAVKCELLELDLTT---LDVVILPVPGTSHD 68 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-cccc---------cceeecchhhhhcc---CCEEEECCccccCC
Confidence 47999999888899999999999999988754210 0011 24556677776665 9999999993221
Q ss_pred --HHHH-------H-HHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 86 --VDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
++.+ + ++++..++++.++.- +...+ .+.+.++++|+.+++
T Consensus 69 ~~i~~~~~~~~~~l~~~~l~~~~~~~~~~~-G~~~~----~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 69 GKVATVFSNEKVVLTPELLESTKGHCTIYV-GISNP----YLEQLAADAGVKLIE 118 (287)
T ss_pred ceEecccccCCccccHHHHHhcCCCCEEEE-ecCCH----HHHHHHHHCCCeEEE
Confidence 1111 1 456666766555443 33222 222356678888874
No 465
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.36 Score=46.95 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=56.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+|..|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCHHH
Confidence 56888875 99999999999999999999999987765554332100 000 2233333444456
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++.+.+.+.+=++||++..
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCc
Confidence 66777766665555577777654
No 466
>PRK05868 hypothetical protein; Validated
Probab=93.72 E-value=0.076 Score=55.41 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 35899999999999999999999999999999875
No 467
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.71 E-value=0.41 Score=46.76 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCccCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010652 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 M~~~~~~~-IgiIGlG---~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|+..+..| +-|.|.+ -+|..+|+.|++.|++|++.+|+. +.++..++. . . .. ...+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~--------~---~-----~~---~~~~ 60 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL--------V---D-----EE---DLLV 60 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh--------c---c-----Cc---eeEE
Confidence 66555434 5666875 799999999999999999999883 333222210 0 0 00 1222
Q ss_pred EEecCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
-.=+.+.+.++++++.+.....+=|++|+...
T Consensus 61 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 61 ECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 22234445677777776655544567777544
No 468
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.71 E-value=0.23 Score=50.72 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=64.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++-|.|.|..|+..|.++...|.+|.|++.+|-+.-++.-.| +. ..+.+|++.. +|++|.++-.-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnk--- 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNK--- 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCc---
Confidence 3577889999999999999999999999999997654444332 33 3467777776 89999987553
Q ss_pred HHHH-HHHhhccCCCCEEEeCC
Q 010652 87 DQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iiId~s 107 (505)
.|+ .+-...++.|.|+.+.+
T Consensus 276 -dVi~~eh~~~MkDgaIl~N~G 296 (420)
T COG0499 276 -DVIRKEHFEKMKDGAILANAG 296 (420)
T ss_pred -CccCHHHHHhccCCeEEeccc
Confidence 334 33444577888887765
No 469
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.67 E-value=0.46 Score=50.23 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe--cCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... ..+.+ +... . .+... ...+|+||.+ +|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996643211 11111 2332 2 22221 1238888765 44432
Q ss_pred h-HH---HHHH--HHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCC
Q 010652 85 P-VD---QTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 ~-v~---~vl~--~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi 126 (505)
+ +. +++. +++..+.+..|-|.+|++...++.-+...+...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 2 22 2221 22222223356667777776666666677777663
No 470
>PRK08589 short chain dehydrogenase; Validated
Probab=93.64 E-value=0.48 Score=46.84 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |-+|..+|..|+++|++|++.+|+ ++.++..+..... -.. ...+..=+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 68 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--------------GGK---AKAYHVDISDEQQ 68 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--------------CCe---EEEEEeecCCHHH
Confidence 45777775 899999999999999999999999 6555444321100 000 2233344455556
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++.+...+.+=+++|++...
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 69 VKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHcCCcCEEEECCCC
Confidence 777777776655555777776543
No 471
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.53 Score=45.95 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=54.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.++.... ... .....+..-+.+...
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD--------------VAG-ARVLAVPADVTDAAS 72 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------cCC-ceEEEEEccCCCHHH
Confidence 3466667 589999999999999999999999988776655432100 000 001222233344455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st 108 (505)
++.+++++.....+=+++|++..
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 66666666665555567777654
No 472
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.38 Score=48.31 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=56.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |-+|..+|..|+++|++|.+.+|++++.+++.+..... -.. ...+-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--------------~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--------------GGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHH
Confidence 45778885 99999999999999999999999988776655432100 000 2222233334455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++++++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776543
No 473
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.61 E-value=0.083 Score=56.42 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=34.0
Q ss_pred cCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 4 ~~~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++.++++|||+|.-|.+-|+.|.+.|++|+++.|+.+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 3567899999999999999999999999999999875
No 474
>PLN00016 RNA-binding protein; Provisional
Probab=93.59 E-value=0.37 Score=50.28 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCcEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010652 5 ALSRIGLA----G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 5 ~~~~IgiI----G-lG~mG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
++++|.|+ | .|.+|..++..|.++||+|++.+|++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45689999 6 5999999999999999999999998765
No 475
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.57 E-value=0.077 Score=53.84 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999999875
No 476
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.69 Score=45.05 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56889987 99999999999999999999999987655544
No 477
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.56 E-value=0.54 Score=47.73 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=57.2
Q ss_pred CCccCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEe
Q 010652 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 1 M~~~~~~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|.....++|-|.| .|-+|..+++.|+++|++|++.+|+.++.+++.+... . .. .. ..++..=
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~--------~-~~-----~~---~~~~~~D 63 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG--------I-PP-----DS---YTIIHID 63 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--------c-cC-----Cc---eEEEEec
Confidence 4433345677887 4999999999999999999999999887766554310 0 00 00 2233333
Q ss_pred cCCCchHHHHHHHHhhccCCCCEEEeCCC
Q 010652 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iiId~st 108 (505)
+.+...++.+++++.....+=+++|+...
T Consensus 64 l~~~~~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 64 LGDLDSVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 44445566666665544333467777654
No 478
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.52 E-value=0.56 Score=46.11 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCC--CeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQL--PLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~-V~v~dr~~~~~~~~~~~~~~~g~~--~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|.-||+|. | .++..+++.|.. |+++|+++..++...+.....+ . .+..... +. ..|+|+.....
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--~~-----~fD~Vvani~~- 189 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--DL-----KADVIVANILA- 189 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC--CC-----CcCEEEEcCcH-
Confidence 5789999998 6 456667777775 9999999998876655432211 0 1111110 00 27888876544
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
..+..++.++...+.+|..++-.+- .........+.+.+.|+..+.
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi-~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGI-LEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEC-cHhhHHHHHHHHHHCCCEEEE
Confidence 3566777888888988877765433 334555666777777776554
No 479
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.51 E-value=0.28 Score=49.45 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|.|||- ..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 57999995 88999999999988 6789887532 1256666666 999999996
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-+..+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 654322 13477999999998654
No 480
>PRK06847 hypothetical protein; Provisional
Probab=93.43 E-value=0.1 Score=54.16 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.+|.|||.|..|..+|..|++.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998864
No 481
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.42 E-value=1.2 Score=42.60 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~-~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-|.+|..=++.|++.|-+|+++..+. +....+...+... -+.....++++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999997665 4555555443210 011122333333 389999999885 4
Q ss_pred HHHHHH
Q 010652 86 VDQTIA 91 (505)
Q Consensus 86 v~~vl~ 91 (505)
+.+-+.
T Consensus 85 ln~~i~ 90 (210)
T COG1648 85 LNERIA 90 (210)
T ss_pred HHHHHH
Confidence 554443
No 482
>PRK06153 hypothetical protein; Provisional
Probab=93.42 E-value=0.45 Score=49.59 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=62.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh-c----ccCCCCeeeeCCHHHHHhhcCCCcEEEEec
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA-H----REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~-~----~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||+|-.|+.++..|++.|. +++++|.+.=....+..+. . .-|. ...-+...++.+..+. +++. +.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk-~~~KVevaa~rl~~in-~~I~--~~ 252 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELRE-APKKVDYFKSRYSNMR-RGIV--PH 252 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCC-cchHHHHHHHHHHHhC-CeEE--EE
Confidence 589999999999999999999997 6889987642211111110 0 0000 0000111222222221 3432 33
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pv 133 (505)
+.. .-.+.++ .+..-++|++|.-... .-..+.+.+...++-|+++++
T Consensus 253 ~~~-I~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 253 PEY-IDEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred eec-CCHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeee
Confidence 321 1112222 3445689999877543 222345566777888888764
No 483
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.39 E-value=0.59 Score=45.75 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=34.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~ 47 (505)
+++-|.|. |-+|..+++.|+++|++|.+.+|+.++.+++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 45777775 889999999999999999999999877666543
No 484
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.37 E-value=1.2 Score=41.64 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=77.5
Q ss_pred EEEEc--ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 9 IGLAG--LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 9 IgiIG--lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+-=|| .|.++--+| ++....+|+..|++++.++.......+-|-.++.. ..+..++..++.++|.||+-=. ..
T Consensus 38 l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~ 113 (187)
T COG2242 38 LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GN 113 (187)
T ss_pred EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CC
Confidence 44455 566666666 55555689999999998766554322211012322 2244455556667999998765 35
Q ss_pred HHHHHHHHhhccCCC-CEEEeCCCCChhhHHHHHHHHHHcCC-eEEcCCCCCC
Q 010652 86 VDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGL-LYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl~~l~~~l~~g-~iiId~st~~~~~t~~~~~~l~~~gi-~~v~~pvsgg 136 (505)
++.+++.....|++| .+|++..+. ++.....+.+++.|+ ..+...++-+
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 899999999888775 566666553 455556677788888 5555555544
No 485
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.3 Score=49.09 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~----G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++.|||- ..+|.++|..|.++ +..|+++... +.++++..++ +|+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------------------SKNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999995 78999999999988 4678887532 1356666666 999999998
Q ss_pred CCchHHHHHHHHhhccCCCCEEEeCCCCC
Q 010652 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 110 (505)
-+..+. ...+.+|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 765432 24577999999998764
No 486
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=93.30 E-value=0.73 Score=44.81 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=59.4
Q ss_pred EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCC--
Q 010652 32 ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-- 109 (505)
Q Consensus 32 V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 109 (505)
|.+||+++++.+++.+.. ++..+++++++++. .+|.|++|.|+. ...+..... |+.|.-++-.+..
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~-~H~e~a~~a---L~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQE-AVKEYAEKI---LKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChH-HHHHHHHHH---HHCCCCEEEECCccc
Confidence 568999999988887643 34678899999752 499999999986 344444333 4455433335553
Q ss_pred -ChhhHHHHHHHHHHcCCeE-EcCCCCCC
Q 010652 110 -WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 110 -~~~~t~~~~~~l~~~gi~~-v~~pvsgg 136 (505)
.....+++.+..++.|..+ +..+-.+|
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~i~sGai~g 101 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVYIPSGAIGG 101 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEChHHHHH
Confidence 3345666666677777654 44333333
No 487
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.30 E-value=0.54 Score=45.06 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=35.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~ 46 (505)
.+|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMK 46 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47888886 88999999999999999999999988776653
No 488
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.28 E-value=0.14 Score=51.61 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=45.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEecC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|.|. |.+|..++..|+++|++|++.+|+++....+...+.. -+.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVE----IVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCce----EEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47899985 9999999999999999999999987654332211110 0111 1233334333445788887653
No 489
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.27 E-value=0.1 Score=54.69 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~--G~~V~v~dr~~ 39 (505)
+.+|.|||.|.+|.++|..|++. |++|+++|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 46899999999999999999998 99999999875
No 490
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.65 Score=45.88 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=53.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+.|-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+... .. ..++-.-+.+...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 63 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYG-----------------DR---LLPLALDVTDRAA 63 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcc-----------------CC---eeEEEccCCCHHH
Confidence 4678887 5999999999999999999999999887665543210 00 1122222333345
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++.+++++...+.+=+.+|++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 64 VFAAVETAVEHFGRLDIVVNNAGY 87 (275)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666655544444667776543
No 491
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=93.25 E-value=0.46 Score=44.32 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=51.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCchH
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~-dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++.|+|+|..|..++..|.+.|+++.+| |.++.+...... ++....+.+++.+...+.+.++++++....-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~--------g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVD--------GLPVLGGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccC--------CccEECCHHHHhhhcccccEEEEEcCCHHHH
Confidence 4779999999999999999999998866 665543221111 2333445555544333467888898865544
Q ss_pred HHHHHHHhh
Q 010652 87 DQTIAALSE 95 (505)
Q Consensus 87 ~~vl~~l~~ 95 (505)
+.+++.+.+
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 555555543
No 492
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.81 Score=45.92 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EecCCC
Q 010652 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgiIGl-G~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
+++-|.|. |-+|..+|..|+++|++|.+.+|++++.+++.+.... . .+++. .=+.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-----------------~---~~~~~~~~Dv~d~ 69 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-----------------D---DRVLTVVADVTDL 69 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-----------------C---CcEEEEEecCCCH
Confidence 45777775 9999999999999999999999998877665543110 0 22222 334444
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
..++++++++...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 70 AAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56667777766655445777776543
No 493
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.20 E-value=1 Score=45.92 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=34.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHh
Q 010652 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~-~G~~V~-v~dr~~~~~~~~~~~ 48 (505)
-+||+||.|.||+.+....++ .|.+|. +-||+.+.+.+..+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ 61 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDR 61 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHH
Confidence 489999999999999988775 588876 559998887766553
No 494
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.52 Score=49.24 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--------HHHHHHHhhcccC----CCCeeeeCCHHHHHhhcCCCc
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--------KVDETLDRAHREG----QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~--------~~~~~~~~~~~~g----~~~i~~~~s~~e~v~~l~~ad 74 (505)
.+|+|=|.|++|..+|+.|.+.|.+|++.+-+.. .++.+.+.....+ ..+.+..+. +++... .||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 5899999999999999999999999998866655 0111110000000 001222222 444432 388
Q ss_pred EEEEecCCCchHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEc
Q 010652 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~ 130 (505)
+.+=|--.+.....-++. |.. ++|+...|.. .|.+..+.+.++|+.|+.
T Consensus 285 Il~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 877665443322222333 322 3788887764 445666667789987764
No 495
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=93.19 E-value=0.92 Score=38.81 Aligned_cols=100 Identities=11% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCC--
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-- 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-- 83 (505)
..||-|+|-|..+..+.+.+.+.|+++.+.+.+++...... .. +|.++..=+..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~---------------------~~---ad~~~~~~~~~~~ 57 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHV---------------------DM---ADEAYFEPPGPSP 57 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHH---------------------HH---SSEEEEEESSSGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccc---------------------cc---cccceecCcchhh
Confidence 46899999999999999999999999888777776422111 11 44443221222
Q ss_pred ---chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCC
Q 010652 84 ---SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ---~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~p 132 (505)
..++.+++-... .|-..+..+-+......++.+.+.+.|+.|++.+
T Consensus 58 ~~yl~~e~I~~ia~~---~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 58 ESYLNIEAIIDIARK---EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp GTTTSHHHHHHHHHH---TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hhhccHHHHhhHhhh---hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 234555543333 2666777888888888899999989999999753
No 496
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.19 E-value=0.55 Score=45.56 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEe-----c
Q 010652 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL-----V 80 (505)
Q Consensus 7 ~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~-----v 80 (505)
++|.=||+| |..|+.-||+.|.+|++.|.+++.++.........| ..+ -...+.+|+...=++-|+|+++ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 578889998 779999999999999999999988876664433221 111 1234666666532447988865 4
Q ss_pred CCCchHHHHHHHHhhccCCCCEEEeC
Q 010652 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iiId~ 106 (505)
|++ +.++......++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 553 44677777788888776653
No 497
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.16 E-value=0.12 Score=54.39 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46899999999999999999999999999999874
No 498
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.15 E-value=0.24 Score=49.81 Aligned_cols=120 Identities=8% Similarity=0.098 Sum_probs=67.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEecCCC
Q 010652 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgiIGlG~mG~~lA~~La~~G~-~V~v~dr~~~~~~~~~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-+|..+|.||+..|. +|+++|.+.-....+..+-.-. ...+-.-+....+-++++. +++-+......
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4689999999999999999999998 5999997754333332210000 0000000111112222221 45555555432
Q ss_pred chHHHHHHHHhhccCCCCEEEeCCCCChhhHHHHHHHHHHcCCeEEcCCCCC
Q 010652 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~t~~~~~~l~~~gi~~v~~pvsg 135 (505)
... +. +.+-++||++.. .+.....+.+.+.++++.|+.+...|
T Consensus 98 -~~~----~~---l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 -LTT----DE---LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred -CCH----HH---HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 111 11 234468888754 55555566677777888888765443
No 499
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.14 E-value=0.16 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010652 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgiIGlG~mG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+|.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999998875
No 500
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.10 E-value=0.5 Score=46.12 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=55.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEecCCCch
Q 010652 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgiIG-lG~mG~~lA~~La~~G~~V~v~dr~~~~~~~~~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+|..|+++|++|++.+|++++.+...+.... .. .+..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~----------------~~-~~~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA----------------LG-IDALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----------------cC-CeEEEEEccCCCHHH
Confidence 5688887 59999999999999999999999998776654432110 00 002233333444455
Q ss_pred HHHHHHHHhhccCCCCEEEeCCCC
Q 010652 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iiId~st~ 109 (505)
++..++++.....+=+.||.+...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666666655455777777543
Done!