BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010658
(505 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 222/499 (44%), Positives = 315/499 (63%), Gaps = 56/499 (11%)
Query: 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSD 66
KVY+AVGND+Q+GY+T+ W ++KW ISIV+LH+ NIS +DFVYTPFGKLPA+S+S+
Sbjct: 21 KVYIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLC-NIS-QDFVYTPFGKLPASSVSE 78
Query: 67 EKLEILKKYEQGKTDNLLSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVM 126
EKL++L+KYE K D LLSKY+ FCGKV +
Sbjct: 79 EKLQVLRKYEDQKIDKLLSKYITFCGKV-----------------------------CPL 109
Query: 127 GLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKF 186
++F++ GKS++A+SGS++V+ + P++CE +IICGGK+VSLK +D
Sbjct: 110 SVNFVL--FGKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLK---------NDVNNNN 158
Query: 187 AKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLA 246
+ +R + KMF GRN +R S G + D S S+W+ +QEIE YFQ L
Sbjct: 159 SNIRSWIG------KMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQLL 208
Query: 247 SFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKE 306
S NL + E + + + + + + A + +M VAE+ E+++ K+NEA+ MI K +E
Sbjct: 209 SLNL---AEEETENVVEEEQEDDDDVALNVLQHMDVAEKLEYVRRKVNEAKLMIDEKSRE 265
Query: 307 TKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEES 366
K +AER +A+WAI LCNSR + E+ KE+ R ++Q LDS KE E VE+
Sbjct: 266 VKVNAERSNRAEWAISLCNSRIGEFEAWIKEESERREKLQATLDSDKECIEEAKNYVEKG 325
Query: 367 KNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRI 426
K +L SL ELQ LS+K++ AK AE +LE+ V+ R E++ +IE+LR QRDV +RRI
Sbjct: 326 KTKLHSLAELQEVLSSKVKTMMEAKSQAEVELERVVLQRGEMITEIEKLRSQRDVFNRRI 385
Query: 427 EFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHA 486
EFCKE++ IG V + E+ C +REY AEDIRLATE +S+R RLK G+WTNVYRGR+ H
Sbjct: 386 EFCKEREVIGSVSK-EEVKCGYREYVAEDIRLATETYSDRLRLKSGGNWTNVYRGRIKHT 444
Query: 487 SVAIKTLNNGLSEEDFQAK 505
+VA+K + + LS+E F AK
Sbjct: 445 TVAVKVIGDSLSDEAFGAK 463
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 115/516 (22%), Positives = 212/516 (41%), Gaps = 68/516 (13%)
Query: 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSD 66
K++VAV + TL W ++ + I ++ +H + K P ++ +
Sbjct: 46 KIFVAVDKHVAKSKSTLIWALQNTGGKKICLIHVH-----QPSQMIPLMGAKFPVGAVKE 100
Query: 67 EKLEILKKYEQGKTDNLLSKYLGFCGK--VKAEILKVEKSDEPVHKLILDLVSRLTITKL 124
E++ + ++ E+ K +L YL C + V+AE + +E E + I+ L+S L I KL
Sbjct: 101 EEVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEM--ESIENGIVQLISELGIRKL 158
Query: 125 VMGLSF-----MIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIME 179
VMG + + KSR A+ FV P C+++ C G L+ + E M+
Sbjct: 159 VMGAAADRHYSRRMTDLKSRKAI----FVRREAPTLCQIWFTCKGYLIHTR----EATMD 210
Query: 180 DDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPY-SRSTWENCVQEI 238
D + ++A R ++ +L + FS P+++ + SR + VQ++
Sbjct: 211 DTES-EYASPRPSISASDLL-QTFS--------------TPESEHQHISRVQSTDSVQQL 254
Query: 239 EIYFQHL--------ASFNLDDASNSEDGDEILQTRAIEPNA-------AEQIDSNMSVA 283
S N D+ DG E+ + + + + +D + +V
Sbjct: 255 VSNGSSTEQSGRVSDGSLNTDEEERESDGSEVTGSATVMSSGHSSPSSFPDGVDDSFNV- 313
Query: 284 ERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRM 343
KI +A K+E + R KA+ RA Q ES E++ R
Sbjct: 314 --------KIRKATSEAHSSKQEAFAETLRRQKAEKNALDAIRRAKQSESAYSEELKRRK 365
Query: 344 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVI 403
+ + + KE+ + + E L S + ++ L +++ S +L+ AV
Sbjct: 366 DTEIAVAKEKERFITIKNEQEVIMEELQSAMAQKAMLESQIAKSDGTMEKLNQKLDIAVK 425
Query: 404 ARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDF 463
++ + EEL+ +RD R E + + +L F +++ +I AT F
Sbjct: 426 LLQKLRDEREELQTERDRALREAEELRSHAETSTL----QLPQYFTDFSFSEIEEATNHF 481
Query: 464 SERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSE 499
++ G + ++Y G L H VAIK LN S+
Sbjct: 482 DSTLKIG-EGGYGSIYVGLLRHTQVAIKMLNPNSSQ 516
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 1 MDTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLP 60
+D +E ++VAV D++ T+ W R + + I ++ +H T + +T KL
Sbjct: 11 LDVDE-TIFVAVAEDVERSKTTVLWAARNFSGKKICLLYVHRTARAA----SWT-HKKLV 64
Query: 61 ATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLT 120
S ++++++ E+ K D L++ YL + + + K+ + + + + I++L++R
Sbjct: 65 GGSFKKHDVKVIERVEKPKVDELMNSYLQLLSETEIQTDKLCIAGQNIEECIVELIARHK 124
Query: 121 ITKLVMG------LSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGEND 174
I LVMG S+ + KS+ A+ FV PD C ++ +C G L+ + ND
Sbjct: 125 IKWLVMGAASDKHYSWKMTDL-KSKKAI----FVCKKAPDSCHIWFLCKGYLIFTRASND 179
Query: 175 E 175
+
Sbjct: 180 D 180
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 450 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNGLSEEDFQ 503
+Y+ +I AT +F ++L G + +VY+G L H VA+K L + S F+
Sbjct: 447 DYSFMEINEATNEFDPSWKLG-EGKYGSVYKGNLQHLQVAVKMLPSYGSLNHFE 499
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54
PE=2 SV=1
Length = 308
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Query: 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSL 64
E +YVAV D+++ +TL W ++ + + I ++ +H+ ++++ ++ L
Sbjct: 2 EDAIYVAVNQDVRESKKTLLWALKNLQVKKIFLLHVHLPFSLTTS-----------SSRL 50
Query: 65 SDEKLEILKKYEQGKTDNLLSKYLGFC---GKVKAEILKVEKSDEPVHKLILDLVSRLTI 121
+++ ++ E + N L KY C G + ++ S V + I++L+ + I
Sbjct: 51 EQSEIDAIQDSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNII 110
Query: 122 TKLVMGLSFMIP--SAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLV 167
T LVMG + P S G S T+ Y V H P C+++ IC GKL+
Sbjct: 111 TNLVMGAA-ADPHYSRGMSITSRKAEY-VSQHAPHSCKIWFICKGKLI 156
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSD 66
K+YVAV + +L W I+ + IV +H +P +
Sbjct: 35 KIYVAVTEKDLESKSSLVWAIQNSGGKEFCIVHVH---------------QPIPGEMFHE 79
Query: 67 EKLEILKKYEQGKTDNLLSKYLGFCGK--VKAEILKVEKSDEPVHKLILDLVSRLTITKL 124
+KL + +K E+ K KYL C + V AEI+ +E + V K IL L+S+ +TKL
Sbjct: 80 QKLRLYRK-EKDKAHKNSEKYLQICRQMQVTAEIIYIE--TDSVEKGILQLISQRGVTKL 136
Query: 125 VMGLSF-----MIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLV 167
VMG + M KS+ A+ ++H P C ++ C G L+
Sbjct: 137 VMGAAADRHYSMRMRDLKSKKAI----YIHREAPATCLIWFTCNGYLI 180
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 8 VYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDE 67
V+VAV +D+++ TL W +R A+ + ILHV Y P PA +E
Sbjct: 12 VHVAVKSDVRESRSTLLWALRNLGAKKV--CILHV----------YQPKTASPAARKLEE 59
Query: 68 KLEILKKYEQGKTDNLLSKYLGFCGKVKAE-----ILKVEKSDEPVHKLILDLVSRLTIT 122
I+ YE L Y FC + I +E +D V + IL+L+ I
Sbjct: 60 LEAIM--YE------TLHDYFDFCQQEGVNEDDIYISCIEMND--VKQGILELIHESKIK 109
Query: 123 KLVMGLSFMIPSAGK-----SRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGI 177
KLVMG + + K SR A +V+ H P CE+ +C G L+ K N E
Sbjct: 110 KLVMGAASDHHYSEKMFDLKSRKA----KYVYQHAPSSCEVMFMCDGHLIYTKEANLEDC 165
Query: 178 M 178
M
Sbjct: 166 M 166
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 121/540 (22%), Positives = 219/540 (40%), Gaps = 92/540 (17%)
Query: 8 VYVAVGNDLQDGYRTLDWTIRKWKAQSIS-IVILHVTYNISIKDFVYTPFGKLPATSLSD 66
V VA+ + Y W + K+ + + +L+V +S ++ TP G A ++S+
Sbjct: 24 VAVAINGKKKSKYVVF-WALEKFIPEGFTDFKLLYVRPPVS---YIPTPMGI--AVAVSE 77
Query: 67 EKLEILKKYEQ---GKTDNLLSKYLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTI 121
+ +++ Y+Q + +L Y KV+ E+L ++ S EP + ++ +
Sbjct: 78 LREDVVSAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLD-SLEPAAAIAEEIAG-TGV 135
Query: 122 TKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDD 181
TKLV+G+S G + S + +P +C +++I GKL S++ +
Sbjct: 136 TKLVIGMSLR----GFFSRKIDMSSLIATAVPRFCTVYVISKGKLASVRPSESDA----S 187
Query: 182 QGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYS----RSTWENCVQE 237
++F ER + + T + LS S SP+S S N V +
Sbjct: 188 GSIRF----ERSSSTSGSTDSPRLPPEYQDFLSAVSEAQSRVSPFSPALKHSMGSNAVAQ 243
Query: 238 IEIYFQHLASFNLDDASNSEDGDEILQTRAIE---------PNAAEQIDSNMSVAERTEF 288
+D +S+ D +E+ R +E N E ++ + TE
Sbjct: 244 ------------MDTSSSGTDQEEVSTGRGMEIVHSGIEGKKNKDESFSASFPMG--TEA 289
Query: 289 MKS-------KINEAREMIRLKKKETKDD-------AERCAKAKWAICLCNSRADQL--- 331
S + +E R +R D A W + +D L
Sbjct: 290 YNSMSWTSKWRDHEDRREMRSSSSSNNHDLVNMDWGAVVPENYSWVSHTASHMSDGLLSV 349
Query: 332 ESLTKEDVASRMEIQR---DLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKL---- 384
S+T V EI++ +L ++E + + +L+ L + + E S KL
Sbjct: 350 HSITDNQVNLNFEIEKLRAELKHVQEMYAMAQTETVGASKKLTELNQRRFEESEKLVELK 409
Query: 385 QLSTMAKGHA--EAQLEKAVIARAEIVKDIEELRRQRDVLHRR-IEF-----CKEKDAIG 436
+ +AK A E Q + + AE VK++ ++ LHRR EF +EKD +
Sbjct: 410 EKEEVAKDTASKEKQRYEEAMKEAEKVKEL----MMKEALHRREAEFKAERDAREKDKLQ 465
Query: 437 MVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNNG 496
+ S ++ Y E+I AT DF+E ++ G + +VY+ L+H + A+K L+ G
Sbjct: 466 ASLVSP--GVQYQHYTWEEIAAATSDFAENLKIGI-GAYGSVYKCNLHHTTGAVKVLHAG 522
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 46/170 (27%)
Query: 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSD 66
K+YVAVG+DL + TL W I+ + IV +H
Sbjct: 15 KIYVAVGSDLGNK-STLVWAIQNTGGKEFCIVHVH------------------------- 48
Query: 67 EKLEILKKYEQGKTDNLLSKYLGFCGKVK--AEILKVEKSDEPVHKLILDLVSRLTITKL 124
+ L + E+ KT +L KYL C +++ AE++ ++ E V K I+ L+S + KL
Sbjct: 49 ---QPLYRKEKEKTQKILDKYLQKCRQMQVCAEMIHIKM--ESVEKGIIQLISERNVKKL 103
Query: 125 VMGLSFMIPSAGKSRTAV-------SGSYFVHHHMPDYCELFIICGGKLV 167
VMG +A +R ++ + + ++ P C ++ C G LV
Sbjct: 104 VMG------AASDTRYSMRMADLLSTKAIYIRQEAPATCCIWFTCKGYLV 147
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 26/179 (14%)
Query: 8 VYVAVGNDLQDGYRTLDWTIRKWKAQ-SISIVILHVTYNISIKDFVYTPFGKLPATSLSD 66
V VA+ + Y + W I K+ + ++ +LH+ I+ V TP G A +S+
Sbjct: 22 VVVALSGSSKSKY-VVTWAIEKFATEGNVGFKLLHIHPMIT---SVPTPMGN--AIPISE 75
Query: 67 EKLEILKKYEQ---GKTDNLLSKY--LGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTI 121
+ +++ Y Q +++ +L Y L KV E+L +E + V I + V+R +I
Sbjct: 76 VRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDN--VAAAIAEEVTRDSI 133
Query: 122 TKLVMGLSFMIPSAGKSRTAVSGSY----FVHHHMPDYCELFIICGGKLVSLKGENDEG 176
++V+G G SR+ S + MP++C ++++ GKL ++ + +G
Sbjct: 134 DRIVIG--------GSSRSFFSRKADICSVISALMPNFCTVYVVSKGKLSCVRPSDSDG 184
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56
PE=2 SV=1
Length = 365
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 60 PATS-LSDEKLEILKKYEQGKTDNLLSKYLGFC---GKVKAEILKVEKSDEPVHKLILDL 115
P++S L +++ +++ EQ ++ L KY C G ++ ++ S V + I++L
Sbjct: 3 PSSSGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVEL 62
Query: 116 VSRLTITKLVMGLSF-MIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLK 170
+ + I KL+MG + S G + + +V H P C ++++C G L+ +
Sbjct: 63 IYQNNIKKLIMGATADSHYSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLIQTR 118
>sp|P08089|M6B_STRPY M protein, serotype 6 OS=Streptococcus pyogenes GN=emm6 PE=1 SV=1
Length = 483
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 310 DAERCAKAKWAICLCNSRADQLESLTKEDV---ASRMEIQRDLDSLKEQSCEVIRDVEES 366
DA R AK + L N A +L+ + +E ASR ++RDLD+ +E +V + +EE+
Sbjct: 291 DASREAKKQVEKDLANLTA-ELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEA 349
Query: 367 KNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA-RAEIVKDIEELRRQR 419
++L++L +L EL +L+ K +A+LE A + ++ K EEL + R
Sbjct: 350 NSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAEELAKLR 403
>sp|Q5X9Q9|M6A_STRP6 M protein, serotype 6 OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=emm6 PE=3 SV=1
Length = 415
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 310 DAERCAKAKWAICLCNSRADQLESLTKEDV---ASRMEIQRDLDSLKEQSCEVIRDVEES 366
DA R AK + L N A +L+ + +E ASR ++RDLD+ +E +V + +EE+
Sbjct: 223 DASREAKKQVEKDLANLTA-ELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEA 281
Query: 367 KNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA-RAEIVKDIEELRRQR 419
++L++L +L EL +L+ K +A+LE A + ++ K EEL + R
Sbjct: 282 NSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAEELAKLR 335
>sp|P12379|M24_STRPY M protein, serotype 24 OS=Streptococcus pyogenes GN=emm24 PE=3 SV=1
Length = 539
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 330 QLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTM 389
+LE K ASR ++RDLD+ +E +V + +EE+ ++L++L +L EL +L+
Sbjct: 369 KLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEK 428
Query: 390 AKGHAEAQLEKAVIA-RAEIVKDIEELRRQR 419
K +A+LE A + ++ K EEL + R
Sbjct: 429 EKAELQAKLEAEAKALKEKLAKQAEELAKLR 459
>sp|P49054|PAM_STRPY Plasminogen-binding group A steptococcal M-like protein PAM
(Fragment) OS=Streptococcus pyogenes GN=pam PE=1 SV=1
Length = 388
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 310 DAERCAKAKWAICLCNSRADQLESLTKEDV---ASRMEIQRDLDSLKEQSCEVIRDVEES 366
DA R AK + L N A +L+ + +E ASR ++RDLD+ +E +V + +EE+
Sbjct: 223 DASREAKKQVEKGLANLTA-ELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEA 281
Query: 367 KNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA-RAEIVKDIEEL 415
++L++L +L EL +L+ K +A+LE A + ++ K EEL
Sbjct: 282 NSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAEEL 331
>sp|P02977|M5_STRP5 M protein, serotype 5 OS=Streptococcus pyogenes serotype M5 GN=emm5
PE=1 SV=2
Length = 492
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 310 DAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNR 369
DA R AK + + +LE K ASR ++RDLD+ +E +V + +EE+ ++
Sbjct: 307 DASREAKKQ-----LEAEQQKLEEQNKISEASRKGLRRDLDASREAKKQVEKALEEANSK 361
Query: 370 LSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA-RAEIVKDIEELRRQR 419
L++L +L EL +L+ K +A+LE A + ++ K EEL + R
Sbjct: 362 LAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAEELAKLR 412
>sp|P19401|M12_STRPY M protein, serotype 12 (Fragment) OS=Streptococcus pyogenes
GN=emm12 PE=1 SV=1
Length = 564
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399
ASR ++RDLD+ +E +V + +EE+ ++L++L +L +L +L+ K +A+LE
Sbjct: 416 ASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKLNKDLEESKKLTEKEKAELQAKLE 475
Query: 400 KAVIA-RAEIVKDIEELRRQR 419
A + ++ K EEL + R
Sbjct: 476 AEAKALKEQLAKQAEELAKLR 496
>sp|P13050|ARP4_STRPY IgA receptor OS=Streptococcus pyogenes GN=arp4 PE=1 SV=1
Length = 386
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399
ASR + RDL++ +E +V D+ E+ ++L +L +L EL +LS K +A+LE
Sbjct: 246 ASRQGLSRDLEASREAKKKVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLE 305
Query: 400 KAVIA-RAEIVKDIEEL 415
A + ++ K EEL
Sbjct: 306 AEAKALKEQLAKQAEEL 322
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 448 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 495
+ ++ E+I AT FS+ ++ G + +VYR L+H +VA+K L++
Sbjct: 414 YMKFEWEEIVEATSSFSDELKIGVGG-YGSVYRCNLHHTTVAVKVLHS 460
>sp|P16947|M49_STRP9 M protein, serotype 49 OS=Streptococcus pyogenes serotype M49
GN=emm49 PE=1 SV=1
Length = 389
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399
ASR + RDL++ +E +V D+ E+ ++L +L +L EL +LS K +A+LE
Sbjct: 249 ASRQGLSRDLEASREAKKKVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQARLE 308
Query: 400 KAVIA-RAEIVKDIEEL 415
A + ++ K EEL
Sbjct: 309 AEAKALKEQLAKQAEEL 325
>sp|P50468|M21_STRPY M protein, serotype 2.1 OS=Streptococcus pyogenes GN=emmL2.1 PE=3
SV=1
Length = 407
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399
ASR + RDL++ +E +V D+ E+ ++L +L +L EL +LS K +A+LE
Sbjct: 267 ASRQGLSRDLEASREAKKKVEADLAEANSKLQALEKLNKELEEGKKLSEKEKAELQAKLE 326
Query: 400 KAVIA-RAEIVKDIEEL 415
A + ++ K EEL
Sbjct: 327 AEAKALKEQLAKQAEEL 343
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm3 PE=1 SV=1
Length = 1194
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 284 ERTEFMKSKI---NEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVA 340
ER E +K++I N + E++R++K++ +D K+K A+ L +S+ + +K+D +
Sbjct: 265 ERIERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKVALELQSSQLSRQIEFSKKDES 324
Query: 341 SRMEIQRDLDS 351
S++ I +L+S
Sbjct: 325 SKLNILSELES 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,102,063
Number of Sequences: 539616
Number of extensions: 7293099
Number of successful extensions: 27409
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 544
Number of HSP's that attempted gapping in prelim test: 26068
Number of HSP's gapped (non-prelim): 1734
length of query: 505
length of database: 191,569,459
effective HSP length: 122
effective length of query: 383
effective length of database: 125,736,307
effective search space: 48157005581
effective search space used: 48157005581
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)