Query 010658
Match_columns 505
No_of_seqs 446 out of 1872
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.9 4.6E-24 9.9E-29 193.2 16.0 143 7-164 1-146 (146)
2 PRK15456 universal stress prot 99.8 1.5E-19 3.3E-24 163.3 14.9 137 5-162 2-142 (142)
3 PRK15005 universal stress prot 99.8 6.1E-19 1.3E-23 159.1 15.1 140 5-162 2-144 (144)
4 PRK09982 universal stress prot 99.8 4.1E-19 8.9E-24 161.0 12.7 137 5-163 3-139 (142)
5 PRK15118 universal stress glob 99.8 4.9E-18 1.1E-22 153.6 12.2 137 4-163 2-139 (144)
6 cd01987 USP_OKCHK USP domain i 99.7 1.3E-17 2.7E-22 146.7 11.5 123 7-161 1-123 (124)
7 cd01988 Na_H_Antiporter_C The 99.7 3.5E-16 7.6E-21 138.1 14.7 130 7-162 1-132 (132)
8 PF00582 Usp: Universal stress 99.7 5.6E-16 1.2E-20 136.0 15.0 137 5-162 2-140 (140)
9 PRK10116 universal stress prot 99.7 4E-16 8.8E-21 140.4 13.9 137 4-162 2-138 (142)
10 PRK11175 universal stress prot 99.6 1.9E-15 4.1E-20 153.3 14.0 144 4-164 2-147 (305)
11 cd00293 USP_Like Usp: Universa 99.6 7.4E-14 1.6E-18 121.2 14.0 128 7-161 1-130 (130)
12 PRK11175 universal stress prot 99.6 4.2E-14 9E-19 143.5 13.9 141 5-163 152-300 (305)
13 COG0589 UspA Universal stress 99.5 1.7E-12 3.6E-17 116.8 15.8 147 1-163 1-152 (154)
14 PRK12652 putative monovalent c 99.3 2.2E-11 4.8E-16 126.3 13.7 106 2-129 2-122 (357)
15 PRK10490 sensor protein KdpD; 98.8 4.7E-08 1E-12 113.5 14.1 126 5-164 250-375 (895)
16 KOG1187 Serine/threonine prote 98.7 1.6E-08 3.5E-13 105.8 5.5 58 447-505 61-121 (361)
17 COG2205 KdpD Osmosensitive K+ 98.5 6E-07 1.3E-11 99.6 12.1 130 5-166 248-377 (890)
18 cd01984 AANH_like Adenine nucl 97.5 0.00039 8.4E-09 57.1 7.6 84 8-160 1-85 (86)
19 TIGR02432 lysidine_TilS_N tRNA 96.1 0.046 9.9E-07 51.6 10.2 93 7-130 1-109 (189)
20 KOG1029 Endocytic adaptor prot 95.5 1.2 2.6E-05 50.1 18.8 19 326-346 378-396 (1118)
21 PLN03159 cation/H(+) antiporte 95.3 0.11 2.4E-06 60.4 11.0 151 5-164 458-617 (832)
22 PF04111 APG6: Autophagy prote 95.2 0.5 1.1E-05 48.7 14.5 23 407-429 110-132 (314)
23 KOG3653 Transforming growth fa 95.2 0.0085 1.8E-07 63.7 1.4 26 468-494 217-242 (534)
24 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.9 2.7 5.8E-05 37.6 18.9 99 320-428 32-130 (132)
25 PF01171 ATP_bind_3: PP-loop f 94.7 0.27 5.8E-06 46.3 10.2 93 7-130 1-106 (182)
26 PF00261 Tropomyosin: Tropomyo 94.4 4.4 9.5E-05 40.0 18.5 72 358-429 110-181 (237)
27 KOG0964 Structural maintenance 94.4 5.8 0.00013 46.1 20.9 66 365-430 415-480 (1200)
28 PRK02224 chromosome segregatio 94.3 7.5 0.00016 45.6 23.2 7 21-27 41-47 (880)
29 PLN03224 probable serine/threo 94.2 0.04 8.6E-07 60.5 3.7 36 459-495 143-196 (507)
30 cd01992 PP-ATPase N-terminal d 94.1 0.49 1.1E-05 44.2 10.5 93 7-130 1-106 (185)
31 KOG0971 Microtubule-associated 94.0 5.8 0.00013 45.6 19.7 56 346-401 388-443 (1243)
32 KOG0980 Actin-binding protein 93.0 13 0.00029 42.8 20.6 25 347-371 431-455 (980)
33 COG4026 Uncharacterized protei 92.9 3.6 7.7E-05 39.9 13.9 25 448-472 210-234 (290)
34 KOG0161 Myosin class II heavy 92.8 9.9 0.00021 47.9 21.0 157 274-432 1758-1914(1930)
35 KOG0193 Serine/threonine prote 92.5 0.093 2E-06 57.6 3.1 39 448-495 386-424 (678)
36 COG1196 Smc Chromosome segrega 92.2 25 0.00055 42.8 23.5 28 93-122 540-567 (1163)
37 PF09726 Macoilin: Transmembra 92.2 6.3 0.00014 45.1 17.3 28 328-355 490-517 (697)
38 PRK04863 mukB cell division pr 92.1 20 0.00043 44.7 22.4 97 359-465 353-449 (1486)
39 PRK09039 hypothetical protein; 92.1 17 0.00037 38.0 20.3 76 346-421 122-198 (343)
40 KOG0658 Glycogen synthase kina 91.7 0.16 3.5E-06 52.6 3.6 34 461-495 24-59 (364)
41 PLN03225 Serine/threonine-prot 91.7 0.17 3.7E-06 56.4 4.1 36 459-495 130-171 (566)
42 PF09304 Cortex-I_coil: Cortex 91.6 7.8 0.00017 33.4 13.0 55 345-399 21-75 (107)
43 KOG0605 NDR and related serine 91.3 1.8 3.8E-05 47.2 11.0 34 460-494 140-175 (550)
44 PF11559 ADIP: Afadin- and alp 91.3 11 0.00024 34.2 16.1 83 327-409 39-121 (151)
45 PRK02224 chromosome segregatio 91.1 28 0.0006 40.9 21.8 38 392-429 649-686 (880)
46 KOG0161 Myosin class II heavy 90.6 21 0.00045 45.2 20.4 104 328-431 1022-1139(1930)
47 PF10146 zf-C4H2: Zinc finger- 90.5 9.5 0.00021 37.6 14.5 81 338-418 23-103 (230)
48 PRK10696 tRNA 2-thiocytidine b 90.4 2.4 5.3E-05 42.2 10.7 42 1-43 25-68 (258)
49 KOG0663 Protein kinase PITSLRE 90.3 0.15 3.3E-06 52.5 1.9 37 458-495 73-111 (419)
50 PTZ00284 protein kinase; Provi 90.3 0.17 3.6E-06 54.7 2.4 40 454-494 122-163 (467)
51 PRK11637 AmiB activator; Provi 90.2 5.3 0.00012 42.9 13.7 44 358-401 79-122 (428)
52 KOG0192 Tyrosine kinase specif 89.9 0.27 5.9E-06 51.7 3.5 28 467-495 47-75 (362)
53 cd07877 STKc_p38alpha_MAPK14 C 89.9 0.35 7.5E-06 49.8 4.2 46 448-494 4-51 (345)
54 smart00787 Spc7 Spc7 kinetocho 89.8 27 0.00058 36.1 19.4 56 362-417 205-260 (312)
55 COG1579 Zn-ribbon protein, pos 89.7 5.2 0.00011 39.6 12.0 37 377-413 91-127 (239)
56 cd01993 Alpha_ANH_like_II This 89.4 2.1 4.6E-05 39.6 8.8 37 7-44 1-39 (185)
57 TIGR00268 conserved hypothetic 89.3 3 6.5E-05 41.4 10.3 35 4-43 11-45 (252)
58 PHA02988 hypothetical protein; 89.0 0.47 1E-05 47.4 4.3 43 447-495 11-53 (283)
59 COG0037 MesJ tRNA(Ile)-lysidin 89.0 1.6 3.4E-05 44.1 8.2 38 5-45 21-58 (298)
60 PRK10884 SH3 domain-containing 88.9 8.3 0.00018 37.3 12.6 44 377-420 120-163 (206)
61 PF04111 APG6: Autophagy prote 88.9 16 0.00035 37.6 15.5 11 450-460 165-175 (314)
62 cd06638 STKc_myosinIIIA Cataly 88.6 0.27 5.8E-06 48.6 2.2 44 451-495 8-53 (286)
63 PRK04778 septation ring format 88.6 27 0.00058 39.1 18.1 51 326-376 289-339 (569)
64 PF09726 Macoilin: Transmembra 88.5 36 0.00077 39.1 19.1 59 328-386 504-577 (697)
65 cd06639 STKc_myosinIIIB Cataly 88.4 0.29 6.2E-06 48.6 2.2 45 450-495 11-57 (291)
66 TIGR02680 conserved hypothetic 88.2 71 0.0015 39.7 22.8 43 378-420 336-378 (1353)
67 COG2433 Uncharacterized conser 87.7 13 0.00028 41.3 14.2 41 380-420 472-512 (652)
68 KOG0600 Cdc2-related protein k 87.4 0.35 7.5E-06 52.2 2.2 33 461-494 117-151 (560)
69 PF00261 Tropomyosin: Tropomyo 87.3 32 0.00069 33.9 21.1 106 321-426 101-213 (237)
70 PF12718 Tropomyosin_1: Tropom 86.5 25 0.00054 32.0 17.7 84 346-429 48-134 (143)
71 COG1196 Smc Chromosome segrega 86.5 89 0.0019 38.2 23.3 16 113-128 535-550 (1163)
72 PF10473 CENP-F_leu_zip: Leuci 85.9 27 0.00059 31.8 13.9 62 364-425 27-88 (140)
73 PTZ00036 glycogen synthase kin 85.7 0.71 1.5E-05 49.6 3.6 34 460-494 65-100 (440)
74 KOG0996 Structural maintenance 85.7 62 0.0013 38.8 18.9 75 356-430 516-590 (1293)
75 KOG0996 Structural maintenance 85.2 59 0.0013 39.0 18.5 68 353-420 390-457 (1293)
76 PRK09188 serine/threonine prot 85.2 0.82 1.8E-05 48.2 3.6 36 458-494 15-53 (365)
77 KOG0250 DNA repair protein RAD 85.2 91 0.002 37.2 21.8 66 346-411 364-430 (1074)
78 TIGR03319 YmdA_YtgF conserved 84.8 52 0.0011 36.4 17.5 56 375-430 115-176 (514)
79 PRK12704 phosphodiesterase; Pr 84.4 55 0.0012 36.3 17.5 57 375-431 121-183 (520)
80 PLN00113 leucine-rich repeat r 84.4 1.1 2.5E-05 52.7 4.8 41 451-495 683-725 (968)
81 PF11932 DUF3450: Protein of u 83.9 47 0.001 32.9 18.8 63 342-404 51-113 (251)
82 PF00038 Filament: Intermediat 83.9 53 0.0011 33.4 21.3 81 347-427 209-300 (312)
83 PF09304 Cortex-I_coil: Cortex 83.7 28 0.0006 30.1 14.1 78 342-419 11-88 (107)
84 KOG1025 Epidermal growth facto 83.5 1 2.2E-05 51.5 3.6 33 464-497 699-737 (1177)
85 PF05278 PEARLI-4: Arabidopsis 83.1 45 0.00097 33.6 14.5 82 318-399 148-231 (269)
86 PF12718 Tropomyosin_1: Tropom 82.8 37 0.00081 30.8 19.1 69 346-414 34-105 (143)
87 PTZ00283 serine/threonine prot 82.5 0.94 2E-05 49.6 2.8 40 455-495 26-67 (496)
88 PLN00034 mitogen-activated pro 82.5 1.2 2.6E-05 45.8 3.6 28 466-494 79-108 (353)
89 KOG2052 Activin A type IB rece 82.5 0.98 2.1E-05 48.2 2.8 31 464-495 214-244 (513)
90 PF05262 Borrelia_P83: Borreli 82.3 84 0.0018 34.5 17.9 11 119-129 65-75 (489)
91 cd05596 STKc_ROCK Catalytic do 82.0 0.88 1.9E-05 47.5 2.3 35 459-494 41-77 (370)
92 PF03109 ABC1: ABC1 family; I 81.9 0.41 8.9E-06 42.1 -0.2 33 461-495 12-45 (119)
93 KOG0163 Myosin class VI heavy 81.8 30 0.00065 39.5 13.8 68 286-355 923-995 (1259)
94 KOG1035 eIF-2alpha kinase GCN2 81.8 0.65 1.4E-05 55.0 1.3 37 458-495 476-514 (1351)
95 PRK12704 phosphodiesterase; Pr 81.8 91 0.002 34.6 19.5 7 467-473 224-230 (520)
96 PF08317 Spc7: Spc7 kinetochor 81.7 68 0.0015 33.2 19.9 52 353-404 208-259 (325)
97 PTZ00263 protein kinase A cata 81.7 1.4 3E-05 45.0 3.6 33 461-494 18-52 (329)
98 TIGR01982 UbiB 2-polyprenylphe 81.7 1.5 3.3E-05 47.3 4.0 33 462-496 119-152 (437)
99 KOG0612 Rho-associated, coiled 81.5 80 0.0017 38.1 17.7 51 339-389 615-665 (1317)
100 KOG0196 Tyrosine kinase, EPH ( 81.5 0.87 1.9E-05 51.7 2.1 55 449-504 608-679 (996)
101 KOG1151 Tousled-like protein k 81.3 1.6 3.5E-05 46.6 3.9 74 404-494 422-497 (775)
102 PF07888 CALCOCO1: Calcium bin 81.3 95 0.0021 34.5 20.5 85 347-431 364-452 (546)
103 KOG0977 Nuclear envelope prote 81.3 65 0.0014 35.7 16.2 100 286-392 115-214 (546)
104 KOG0580 Serine/threonine prote 81.1 1.5 3.2E-05 43.4 3.3 34 460-494 21-56 (281)
105 PRK00106 hypothetical protein; 81.1 97 0.0021 34.5 19.0 24 378-401 139-162 (535)
106 PRK13820 argininosuccinate syn 80.8 12 0.00026 39.9 10.3 35 5-43 2-37 (394)
107 cd05622 STKc_ROCK1 Catalytic d 80.5 1.3 2.9E-05 46.2 3.1 40 454-494 36-77 (371)
108 cd01990 Alpha_ANH_like_I This 79.9 11 0.00024 35.8 8.9 32 8-43 1-32 (202)
109 TIGR00606 rad50 rad50. This fa 79.9 1.4E+02 0.003 37.1 20.4 50 380-429 975-1024(1311)
110 PF12325 TMF_TATA_bd: TATA ele 79.5 29 0.00064 30.7 10.6 34 382-415 68-101 (120)
111 cd05621 STKc_ROCK2 Catalytic d 79.4 1.5 3.3E-05 45.8 3.1 34 460-494 42-77 (370)
112 PF12128 DUF3584: Protein of u 79.4 1.6E+02 0.0036 36.1 22.7 21 346-366 684-704 (1201)
113 PF04949 Transcrip_act: Transc 79.3 51 0.0011 30.2 17.6 80 340-419 70-149 (159)
114 cd05104 PTKc_Kit Catalytic dom 79.1 1.8 3.9E-05 45.2 3.5 34 461-495 35-75 (375)
115 cd05107 PTKc_PDGFR_beta Cataly 79.1 2.4 5.2E-05 45.1 4.5 34 461-495 37-77 (401)
116 PRK10884 SH3 domain-containing 79.0 29 0.00063 33.6 11.5 23 395-417 145-167 (206)
117 KOG0995 Centromere-associated 78.9 1.1E+02 0.0023 34.1 16.7 131 282-418 233-368 (581)
118 smart00787 Spc7 Spc7 kinetocho 78.5 87 0.0019 32.4 18.0 8 450-457 267-274 (312)
119 cd07876 STKc_JNK2 Catalytic do 78.4 2.4 5.2E-05 43.7 4.2 35 459-494 19-55 (359)
120 PF07888 CALCOCO1: Calcium bin 78.3 1.2E+02 0.0025 33.8 23.0 6 37-42 7-12 (546)
121 KOG1026 Nerve growth factor re 78.2 0.34 7.4E-06 55.0 -2.3 39 466-505 491-539 (774)
122 PF05384 DegS: Sensor protein 78.1 59 0.0013 30.2 14.2 24 349-372 36-59 (159)
123 PF09789 DUF2353: Uncharacteri 78.0 90 0.002 32.3 18.2 141 286-426 11-177 (319)
124 smart00090 RIO RIO-like kinase 77.8 2 4.2E-05 42.4 3.1 32 463-495 30-64 (237)
125 KOG4360 Uncharacterized coiled 77.7 1.2E+02 0.0025 33.4 17.2 70 319-388 195-267 (596)
126 PF10481 CENP-F_N: Cenp-F N-te 77.7 83 0.0018 31.7 14.6 72 345-416 44-122 (307)
127 PRK14665 mnmA tRNA-specific 2- 77.6 20 0.00044 37.7 10.7 38 1-43 1-38 (360)
128 KOG0243 Kinesin-like protein [ 77.5 57 0.0012 38.8 15.0 12 286-297 413-424 (1041)
129 PHA02562 46 endonuclease subun 77.3 52 0.0011 36.3 14.6 66 355-420 338-403 (562)
130 COG4942 Membrane-bound metallo 77.1 1.1E+02 0.0024 32.9 21.2 68 342-409 184-251 (420)
131 KOG0994 Extracellular matrix g 76.9 1.8E+02 0.0039 35.2 20.3 54 312-366 1577-1631(1758)
132 KOG0933 Structural maintenance 76.5 1.7E+02 0.0037 34.8 21.7 65 347-411 808-872 (1174)
133 KOG0018 Structural maintenance 76.5 1E+02 0.0023 36.6 16.5 22 279-300 196-217 (1141)
134 PF10168 Nup88: Nuclear pore c 76.4 1.5E+02 0.0034 34.2 19.2 76 342-420 588-663 (717)
135 TIGR00032 argG argininosuccina 76.4 23 0.0005 37.8 10.8 32 7-43 1-32 (394)
136 KOG0933 Structural maintenance 76.3 1.7E+02 0.0038 34.7 21.4 24 291-314 765-788 (1174)
137 KOG0577 Serine/threonine prote 76.3 2 4.3E-05 47.6 2.8 32 462-494 27-60 (948)
138 KOG1095 Protein tyrosine kinas 75.7 1.7 3.6E-05 51.3 2.2 38 466-504 697-744 (1025)
139 cd07875 STKc_JNK1 Catalytic do 75.4 2.9 6.4E-05 43.1 3.8 35 459-494 22-58 (364)
140 COG5185 HEC1 Protein involved 75.3 1.3E+02 0.0028 32.7 16.1 38 356-393 332-369 (622)
141 cd07874 STKc_JNK3 Catalytic do 74.9 3.1 6.7E-05 42.7 3.8 36 459-495 15-52 (355)
142 cd05105 PTKc_PDGFR_alpha Catal 74.6 3.4 7.4E-05 43.8 4.1 34 461-495 37-77 (400)
143 KOG0250 DNA repair protein RAD 74.5 2E+02 0.0043 34.5 22.0 53 346-398 378-431 (1074)
144 TIGR03319 YmdA_YtgF conserved 74.4 1.5E+02 0.0032 32.9 19.9 7 467-473 218-224 (514)
145 PRK04750 ubiB putative ubiquin 74.2 3.9 8.5E-05 45.3 4.5 34 461-496 120-155 (537)
146 TIGR00606 rad50 rad50. This fa 74.2 2.3E+02 0.005 35.2 20.8 21 341-361 882-902 (1311)
147 KOG4236 Serine/threonine prote 73.9 3 6.6E-05 45.6 3.4 32 461-494 565-598 (888)
148 KOG0994 Extracellular matrix g 73.4 2.2E+02 0.0048 34.5 20.9 11 146-156 1373-1383(1758)
149 PF08912 Rho_Binding: Rho Bind 73.3 43 0.00092 26.7 8.8 61 358-418 7-67 (69)
150 KOG2264 Exostosin EXT1L [Signa 73.3 26 0.00055 38.7 10.0 51 369-419 94-144 (907)
151 KOG0976 Rho/Rac1-interacting s 72.9 1.9E+02 0.0041 33.6 17.3 66 355-420 411-480 (1265)
152 PTZ00426 cAMP-dependent protei 72.8 3.5 7.5E-05 42.5 3.6 33 461-494 30-65 (340)
153 PLN00200 argininosuccinate syn 72.7 31 0.00067 36.9 10.7 35 5-43 5-39 (404)
154 cd06614 STKc_PAK Catalytic dom 72.7 3.4 7.4E-05 40.7 3.4 37 458-495 16-54 (286)
155 KOG0980 Actin-binding protein 72.5 2E+02 0.0044 33.7 22.0 9 36-44 28-36 (980)
156 cd06635 STKc_TAO1 Catalytic do 72.1 3.7 7.9E-05 41.5 3.5 31 463-494 27-59 (317)
157 KOG0197 Tyrosine kinases [Sign 72.1 2.5 5.5E-05 45.6 2.4 37 467-504 212-250 (468)
158 cd06656 STKc_PAK3 Catalytic do 71.9 4.2 9.1E-05 40.6 3.8 32 462-494 20-53 (297)
159 PRK09039 hypothetical protein; 71.9 1.3E+02 0.0029 31.4 21.5 73 344-416 113-185 (343)
160 PHA03209 serine/threonine kina 71.2 4.3 9.4E-05 41.9 3.9 34 460-494 65-100 (357)
161 cd06659 STKc_PAK6 Catalytic do 70.8 4.1 9E-05 40.7 3.5 28 466-494 26-55 (297)
162 KOG0574 STE20-like serine/thre 70.4 0.79 1.7E-05 46.6 -1.7 32 463-495 35-68 (502)
163 cd05106 PTKc_CSF-1R Catalytic 70.2 5 0.00011 41.9 4.1 34 461-495 38-78 (374)
164 cd06633 STKc_TAO3 Catalytic do 70.1 4.7 0.0001 40.7 3.7 31 463-494 23-55 (313)
165 PRK14664 tRNA-specific 2-thiou 69.9 39 0.00084 35.6 10.6 38 1-43 1-38 (362)
166 COG1606 ATP-utilizing enzymes 69.8 38 0.00083 33.9 9.7 90 5-130 17-123 (269)
167 PRK03918 chromosome segregatio 69.4 2.3E+02 0.005 33.2 21.4 7 21-27 41-47 (880)
168 cd01994 Alpha_ANH_like_IV This 69.4 48 0.001 31.6 10.3 34 7-45 1-34 (194)
169 KOG0163 Myosin class VI heavy 69.1 2.2E+02 0.0049 32.9 17.6 9 6-14 406-414 (1259)
170 COG5185 HEC1 Protein involved 69.1 1.8E+02 0.0039 31.7 17.4 16 108-123 109-124 (622)
171 PF00875 DNA_photolyase: DNA p 69.1 30 0.00065 31.6 8.6 82 22-129 16-97 (165)
172 KOG4721 Serine/threonine prote 68.7 2.7 5.8E-05 46.4 1.6 38 449-494 119-156 (904)
173 PRK04778 septation ring format 68.5 1.9E+02 0.0042 32.3 16.4 23 404-426 398-420 (569)
174 cd06647 STKc_PAK_I Catalytic d 68.4 5.6 0.00012 39.6 3.9 33 461-494 19-53 (293)
175 PF00769 ERM: Ezrin/radixin/mo 68.1 1.3E+02 0.0029 29.8 16.9 92 319-417 26-117 (246)
176 PRK04863 mukB cell division pr 68.0 3.3E+02 0.0071 34.4 23.0 63 353-415 354-416 (1486)
177 COG4026 Uncharacterized protei 68.0 66 0.0014 31.4 10.6 32 342-373 137-168 (290)
178 KOG2751 Beclin-like protein [S 67.8 1.8E+02 0.0039 31.3 15.9 24 455-478 263-286 (447)
179 cd06657 STKc_PAK4 Catalytic do 67.8 5.5 0.00012 39.8 3.7 27 467-494 26-54 (292)
180 PF00769 ERM: Ezrin/radixin/mo 67.6 92 0.002 30.9 12.2 20 391-410 77-96 (246)
181 KOG0612 Rho-associated, coiled 67.3 2.4E+02 0.0051 34.4 16.8 55 327-381 495-549 (1317)
182 KOG1166 Mitotic checkpoint ser 67.0 4.7 0.0001 47.5 3.3 34 460-494 697-731 (974)
183 PF10168 Nup88: Nuclear pore c 67.0 2.5E+02 0.0053 32.6 17.5 43 349-391 581-623 (717)
184 TIGR00884 guaA_Cterm GMP synth 66.7 58 0.0013 33.5 11.0 36 5-44 16-51 (311)
185 PRK04527 argininosuccinate syn 66.5 55 0.0012 35.0 10.9 34 6-44 3-36 (400)
186 PF15456 Uds1: Up-regulated Du 66.5 95 0.0021 27.6 11.1 36 358-394 26-61 (124)
187 cd01995 ExsB ExsB is a transcr 66.1 41 0.00088 30.8 8.9 32 7-43 1-32 (169)
188 KOG2391 Vacuolar sorting prote 65.9 50 0.0011 34.3 9.9 19 368-386 260-278 (365)
189 KOG1003 Actin filament-coating 65.7 1.3E+02 0.0028 28.9 19.0 17 284-300 60-76 (205)
190 KOG0194 Protein tyrosine kinas 65.6 5.5 0.00012 43.4 3.3 27 467-494 163-195 (474)
191 cd01712 ThiI ThiI is required 65.4 73 0.0016 29.4 10.6 34 7-45 1-34 (177)
192 cd05055 PTKc_PDGFR Catalytic d 65.4 6.1 0.00013 39.6 3.5 35 460-495 34-75 (302)
193 PF08826 DMPK_coil: DMPK coile 65.4 63 0.0014 25.1 8.9 33 367-399 17-49 (61)
194 PRK03918 chromosome segregatio 65.3 2.8E+02 0.006 32.5 22.6 10 156-165 73-82 (880)
195 PF10186 Atg14: UV radiation r 65.2 1.5E+02 0.0033 29.5 18.8 13 415-427 142-154 (302)
196 KOG4278 Protein tyrosine kinas 65.1 3.4 7.3E-05 46.1 1.6 40 464-504 270-312 (1157)
197 PHA03212 serine/threonine kina 65.1 6.9 0.00015 41.3 3.9 32 462-494 93-126 (391)
198 cd06655 STKc_PAK2 Catalytic do 65.1 6.7 0.00014 39.2 3.7 32 462-494 20-53 (296)
199 TIGR00591 phr2 photolyase PhrI 64.7 33 0.00072 37.1 9.2 84 21-129 39-122 (454)
200 PF10498 IFT57: Intra-flagella 64.6 1.8E+02 0.0038 30.7 14.1 55 359-413 264-318 (359)
201 PRK00509 argininosuccinate syn 64.5 79 0.0017 33.8 11.6 35 6-44 3-37 (399)
202 KOG0946 ER-Golgi vesicle-tethe 64.4 1.2E+02 0.0026 35.2 13.2 119 301-419 590-715 (970)
203 TIGR02680 conserved hypothetic 64.3 3.7E+02 0.008 33.6 23.2 40 390-429 341-380 (1353)
204 PF08614 ATG16: Autophagy prot 64.1 88 0.0019 29.8 11.0 48 378-425 133-180 (194)
205 PF05701 WEMBL: Weak chloropla 63.6 2.4E+02 0.0052 31.2 20.1 14 323-336 94-107 (522)
206 KOG4257 Focal adhesion tyrosin 63.6 5.1 0.00011 44.8 2.6 39 465-504 393-440 (974)
207 PRK10660 tilS tRNA(Ile)-lysidi 63.4 28 0.00062 37.6 8.3 39 4-44 14-54 (436)
208 PF00038 Filament: Intermediat 63.4 1.7E+02 0.0038 29.6 16.4 73 329-404 187-259 (312)
209 PF10146 zf-C4H2: Zinc finger- 63.3 1.6E+02 0.0035 29.1 13.9 77 349-432 27-103 (230)
210 cd06654 STKc_PAK1 Catalytic do 62.8 8.2 0.00018 38.4 3.8 32 463-495 22-55 (296)
211 cd06658 STKc_PAK5 Catalytic do 62.7 7.7 0.00017 38.6 3.6 27 467-494 28-56 (292)
212 cd05098 PTKc_FGFR1 Catalytic d 62.4 9 0.00019 38.3 4.0 34 461-495 18-60 (307)
213 COG2433 Uncharacterized conser 62.0 1.7E+02 0.0038 32.8 13.7 14 447-460 524-537 (652)
214 KOG4364 Chromatin assembly fac 61.9 2.8E+02 0.0062 31.5 18.2 14 273-286 249-262 (811)
215 TIGR03185 DNA_S_dndD DNA sulfu 61.9 1.1E+02 0.0025 34.7 13.2 76 326-401 209-288 (650)
216 cd06648 STKc_PAK_II Catalytic 61.8 8.7 0.00019 38.0 3.8 31 463-494 21-53 (285)
217 PF15290 Syntaphilin: Golgi-lo 61.5 1.9E+02 0.0041 29.3 13.2 51 362-412 90-140 (305)
218 PRK09605 bifunctional UGMP fam 60.9 4.7 0.0001 44.5 1.8 36 457-493 329-364 (535)
219 cd01986 Alpha_ANH_like Adenine 60.8 63 0.0014 27.0 8.4 33 8-45 1-33 (103)
220 COG1340 Uncharacterized archae 60.8 2E+02 0.0044 29.4 18.4 26 362-387 166-191 (294)
221 KOG0288 WD40 repeat protein Ti 60.7 2.4E+02 0.0052 30.2 14.2 9 349-357 57-65 (459)
222 PRK12705 hypothetical protein; 60.4 2.6E+02 0.0057 31.0 15.0 15 414-428 154-168 (508)
223 KOG0575 Polo-like serine/threo 60.3 8.8 0.00019 42.5 3.7 32 462-494 19-52 (592)
224 PRK00409 recombination and DNA 60.2 2.7E+02 0.0058 32.6 15.9 19 108-126 277-295 (782)
225 PF06428 Sec2p: GDP/GTP exchan 60.1 7.8 0.00017 33.2 2.6 24 338-361 6-29 (100)
226 PF15290 Syntaphilin: Golgi-lo 60.1 2E+02 0.0044 29.2 13.7 94 286-400 70-163 (305)
227 KOG0018 Structural maintenance 60.1 2.8E+02 0.006 33.3 15.5 69 330-398 392-460 (1141)
228 PRK00919 GMP synthase subunit 60.1 97 0.0021 31.9 11.1 36 5-44 21-56 (307)
229 PRK12342 hypothetical protein; 60.0 1.4E+02 0.0031 29.9 11.9 80 15-130 34-119 (254)
230 PF05384 DegS: Sensor protein 60.0 1.5E+02 0.0032 27.6 16.4 42 350-391 23-64 (159)
231 KOG4302 Microtubule-associated 59.6 2.2E+02 0.0048 32.5 14.4 85 345-429 101-186 (660)
232 KOG1094 Discoidin domain recep 59.6 8.1 0.00018 42.9 3.2 37 467-504 544-584 (807)
233 cd01714 ETF_beta The electron 59.6 1E+02 0.0022 29.6 10.5 61 108-172 96-158 (202)
234 COG1340 Uncharacterized archae 59.4 2.1E+02 0.0046 29.2 16.0 6 451-456 280-285 (294)
235 PHA03211 serine/threonine kina 58.7 9.2 0.0002 41.6 3.5 33 460-493 168-202 (461)
236 KOG1962 B-cell receptor-associ 58.7 67 0.0015 31.3 9.0 41 345-385 149-189 (216)
237 PF08826 DMPK_coil: DMPK coile 57.9 87 0.0019 24.3 9.3 24 338-361 9-32 (61)
238 PF14197 Cep57_CLD_2: Centroso 57.9 94 0.002 24.7 9.0 50 369-418 13-62 (69)
239 KOG1027 Serine/threonine prote 57.8 3.8 8.3E-05 47.0 0.4 34 461-494 509-542 (903)
240 PF12777 MT: Microtubule-bindi 57.2 43 0.00093 34.9 8.1 64 350-413 231-294 (344)
241 PLN03159 cation/H(+) antiporte 56.8 82 0.0018 37.1 11.0 39 6-45 631-669 (832)
242 KOG0995 Centromere-associated 56.7 3.2E+02 0.007 30.5 18.8 15 108-122 75-89 (581)
243 COG0661 AarF Predicted unusual 56.4 9.5 0.00021 42.1 3.2 34 461-496 126-160 (517)
244 KOG0976 Rho/Rac1-interacting s 56.2 2.4E+02 0.0052 32.8 13.7 7 324-330 342-348 (1265)
245 TIGR03556 photolyase_8HDF deox 56.2 52 0.0011 35.8 8.9 43 84-129 57-99 (471)
246 TIGR00290 MJ0570_dom MJ0570-re 56.0 1.2E+02 0.0027 29.7 10.5 94 7-130 2-95 (223)
247 KOG0694 Serine/threonine prote 55.9 12 0.00026 42.1 3.8 36 459-495 366-403 (694)
248 KOG3054 Uncharacterized conser 55.8 1.2E+02 0.0026 30.2 10.1 72 279-360 109-180 (299)
249 TIGR02765 crypto_DASH cryptoch 55.5 90 0.0019 33.4 10.5 45 82-129 61-105 (429)
250 COG1579 Zn-ribbon protein, pos 55.4 2.2E+02 0.0049 28.2 21.3 41 359-399 101-141 (239)
251 PRK05253 sulfate adenylyltrans 55.2 96 0.0021 31.8 10.1 38 5-43 27-64 (301)
252 cd01997 GMP_synthase_C The C-t 55.0 1.1E+02 0.0023 31.4 10.3 34 7-44 1-34 (295)
253 PF11932 DUF3450: Protein of u 54.9 2.2E+02 0.0048 28.1 13.8 20 475-494 167-188 (251)
254 cd01996 Alpha_ANH_like_III Thi 54.7 1.3E+02 0.0028 26.8 10.0 33 7-43 3-35 (154)
255 PTZ00121 MAEBL; Provisional 54.7 5.3E+02 0.012 32.4 20.1 23 5-27 675-698 (2084)
256 TIGR01069 mutS2 MutS2 family p 54.1 3.2E+02 0.007 31.9 15.2 7 114-120 278-284 (771)
257 PF06785 UPF0242: Uncharacteri 53.4 2.7E+02 0.0059 29.0 12.5 92 343-434 88-179 (401)
258 PRK13729 conjugal transfer pil 53.3 51 0.0011 35.9 7.9 25 342-366 78-102 (475)
259 PF02887 PK_C: Pyruvate kinase 53.2 17 0.00038 31.4 3.8 49 107-167 3-51 (117)
260 TIGR03185 DNA_S_dndD DNA sulfu 53.0 3.9E+02 0.0084 30.4 15.5 6 156-161 85-90 (650)
261 KOG4403 Cell surface glycoprot 52.6 3.3E+02 0.0072 29.4 19.3 29 342-372 299-327 (575)
262 KOG0964 Structural maintenance 52.0 4.9E+02 0.011 31.2 18.8 140 282-431 783-930 (1200)
263 PF10174 Cast: RIM-binding pro 51.9 4.5E+02 0.0098 30.7 17.9 56 375-430 664-719 (775)
264 PRK00409 recombination and DNA 51.9 4.5E+02 0.0098 30.8 16.3 7 123-129 330-336 (782)
265 TIGR00342 thiazole biosynthesi 51.8 1.7E+02 0.0037 30.9 11.6 34 5-43 172-205 (371)
266 COG4372 Uncharacterized protei 51.2 3.3E+02 0.0072 29.0 16.0 14 286-299 83-96 (499)
267 PF05278 PEARLI-4: Arabidopsis 51.2 2.8E+02 0.006 28.1 12.8 22 378-399 217-238 (269)
268 PF15030 DUF4527: Protein of u 51.0 1.3E+02 0.0027 30.0 9.4 56 348-403 31-86 (277)
269 PF01576 Myosin_tail_1: Myosin 50.7 4.8 0.0001 47.3 -0.3 139 290-430 716-854 (859)
270 cd00632 Prefoldin_beta Prefold 50.3 1.6E+02 0.0034 25.0 10.7 35 381-415 69-103 (105)
271 KOG0598 Ribosomal protein S6 k 50.0 10 0.00022 39.6 1.9 34 460-494 24-59 (357)
272 PF08614 ATG16: Autophagy prot 49.6 1.7E+02 0.0037 27.8 10.3 62 321-382 97-158 (194)
273 KOG0804 Cytoplasmic Zn-finger 49.6 3.8E+02 0.0081 29.1 17.4 68 326-393 361-428 (493)
274 TIGR01069 mutS2 MutS2 family p 49.5 2.7E+02 0.006 32.5 13.7 8 279-286 485-492 (771)
275 PF04102 SlyX: SlyX; InterPro 49.1 1.2E+02 0.0025 24.0 7.5 41 375-415 4-44 (69)
276 KOG0591 NIMA (never in mitosis 49.1 6.2 0.00013 40.2 0.3 31 463-494 21-53 (375)
277 PF05266 DUF724: Protein of un 48.7 2.5E+02 0.0054 26.8 12.5 8 390-397 139-146 (190)
278 KOG0667 Dual-specificity tyros 48.4 17 0.00037 40.5 3.5 29 466-495 191-221 (586)
279 KOG0804 Cytoplasmic Zn-finger 48.3 3.7E+02 0.0079 29.2 13.0 52 348-399 348-399 (493)
280 PF05911 DUF869: Plant protein 48.3 1.6E+02 0.0034 34.3 11.3 55 351-405 593-647 (769)
281 PF10498 IFT57: Intra-flagella 47.8 3.6E+02 0.0079 28.4 13.4 79 341-419 228-310 (359)
282 PRK00074 guaA GMP synthase; Re 47.6 1.2E+02 0.0026 33.5 10.0 36 4-43 214-249 (511)
283 KOG0199 ACK and related non-re 47.5 13 0.00028 42.3 2.4 36 468-504 117-160 (1039)
284 PF01012 ETF: Electron transfe 47.1 1.7E+02 0.0036 26.6 9.6 115 16-173 15-138 (164)
285 KOG1006 Mitogen-activated prot 46.7 8.5 0.00018 38.9 0.8 40 448-495 58-99 (361)
286 PF12072 DUF3552: Domain of un 46.4 2.7E+02 0.0059 26.6 18.5 15 415-429 163-177 (201)
287 cd01713 PAPS_reductase This do 46.4 1.4E+02 0.003 26.5 8.8 34 7-42 1-34 (173)
288 TIGR02231 conserved hypothetic 46.2 2.1E+02 0.0045 31.6 11.7 17 467-484 200-216 (525)
289 PHA03207 serine/threonine kina 46.2 20 0.00044 37.5 3.7 33 462-495 93-129 (392)
290 PF05701 WEMBL: Weak chloropla 45.6 4.6E+02 0.01 29.0 23.1 19 282-300 170-188 (522)
291 PRK02119 hypothetical protein; 45.5 1.1E+02 0.0024 24.5 6.9 42 374-415 8-49 (73)
292 KOG0583 Serine/threonine prote 45.5 21 0.00047 37.6 3.7 35 460-495 16-52 (370)
293 PF05529 Bap31: B-cell recepto 45.4 1.3E+02 0.0029 28.3 8.8 25 391-415 163-187 (192)
294 COG3883 Uncharacterized protei 45.4 3.4E+02 0.0073 27.4 12.0 17 369-385 53-69 (265)
295 PRK00736 hypothetical protein; 45.3 1.3E+02 0.0027 23.8 7.1 41 375-415 5-45 (68)
296 PF06637 PV-1: PV-1 protein (P 45.3 4E+02 0.0088 28.3 12.9 93 274-371 292-387 (442)
297 PF12777 MT: Microtubule-bindi 45.0 74 0.0016 33.2 7.6 38 349-386 223-260 (344)
298 PF10805 DUF2730: Protein of u 44.9 2E+02 0.0043 24.6 9.4 12 407-418 83-94 (106)
299 PF11544 Spc42p: Spindle pole 44.9 1.7E+02 0.0037 23.8 9.1 43 340-382 5-47 (76)
300 KOG1167 Serine/threonine prote 44.9 9.7 0.00021 40.4 0.9 38 457-495 32-74 (418)
301 PRK05370 argininosuccinate syn 44.8 1.9E+02 0.0041 31.4 10.5 27 108-134 110-136 (447)
302 TIGR03545 conserved hypothetic 44.5 3.1E+02 0.0067 30.8 12.6 10 109-118 30-39 (555)
303 KOG0581 Mitogen-activated prot 43.1 32 0.0007 36.0 4.4 27 467-494 85-113 (364)
304 PF02844 GARS_N: Phosphoribosy 42.9 20 0.00044 30.6 2.4 22 108-129 50-71 (100)
305 KOG0243 Kinesin-like protein [ 42.8 6.8E+02 0.015 30.2 18.8 11 77-87 118-128 (1041)
306 KOG1103 Predicted coiled-coil 42.6 4.2E+02 0.0092 27.7 13.6 31 342-372 222-252 (561)
307 cd01999 Argininosuccinate_Synt 42.5 1.9E+02 0.004 30.9 10.1 32 8-43 1-32 (385)
308 PRK08349 hypothetical protein; 42.2 3E+02 0.0065 25.9 11.7 33 6-43 1-33 (198)
309 KOG0198 MEKK and related serin 42.1 23 0.0005 36.6 3.2 33 461-494 17-51 (313)
310 PF11559 ADIP: Afadin- and alp 41.8 2.6E+02 0.0057 25.2 13.2 60 352-411 71-130 (151)
311 PRK11106 queuosine biosynthesi 41.7 2.5E+02 0.0054 27.7 10.2 33 6-43 2-34 (231)
312 PF12761 End3: Actin cytoskele 41.6 1.9E+02 0.0042 27.7 9.0 44 341-384 133-183 (195)
313 KOG2264 Exostosin EXT1L [Signa 41.5 2.2E+02 0.0047 31.8 10.3 7 393-399 132-138 (907)
314 PF15556 Zwint: ZW10 interacto 41.2 3.4E+02 0.0074 26.3 16.1 109 270-381 80-189 (252)
315 KOG1165 Casein kinase (serine/ 41.1 20 0.00043 37.5 2.4 33 461-494 28-62 (449)
316 PRK03359 putative electron tra 40.8 1.9E+02 0.0041 29.0 9.4 80 15-130 35-122 (256)
317 PRK00295 hypothetical protein; 40.6 1.6E+02 0.0036 23.1 7.1 41 375-415 5-45 (68)
318 PRK12705 hypothetical protein; 40.6 5.5E+02 0.012 28.5 17.5 6 467-472 212-217 (508)
319 PRK10359 lipopolysaccharide co 40.5 27 0.00058 34.5 3.3 36 459-495 29-64 (232)
320 PRK13729 conjugal transfer pil 40.4 99 0.0021 33.7 7.6 7 487-493 242-248 (475)
321 PF06160 EzrA: Septation ring 39.9 5.8E+02 0.013 28.5 18.6 45 327-371 286-330 (560)
322 KOG1164 Casein kinase (serine/ 39.8 27 0.00059 35.6 3.4 32 462-494 19-53 (322)
323 PRK04325 hypothetical protein; 39.8 1.9E+02 0.0041 23.2 7.5 41 375-415 9-49 (74)
324 COG0151 PurD Phosphoribosylami 39.8 87 0.0019 33.6 7.0 20 109-128 52-71 (428)
325 KOG2010 Double stranded RNA bi 39.6 2E+02 0.0044 29.8 9.2 64 359-429 145-211 (405)
326 PF10174 Cast: RIM-binding pro 39.6 6.9E+02 0.015 29.3 19.5 15 286-300 345-359 (775)
327 KOG1144 Translation initiation 39.5 2.5E+02 0.0053 32.7 10.6 54 344-397 218-271 (1064)
328 COG1422 Predicted membrane pro 39.5 1.1E+02 0.0024 29.5 7.0 30 271-300 58-88 (201)
329 KOG0962 DNA repair protein RAD 39.4 8.3E+02 0.018 30.3 18.8 19 412-430 270-288 (1294)
330 KOG0032 Ca2+/calmodulin-depend 39.3 30 0.00064 36.7 3.6 31 463-494 37-69 (382)
331 PF05622 HOOK: HOOK protein; 39.1 10 0.00022 43.6 0.0 20 280-299 287-306 (713)
332 KOG0615 Serine/threonine prote 39.0 30 0.00065 37.0 3.4 28 466-494 177-206 (475)
333 PF04849 HAP1_N: HAP1 N-termin 38.8 4.6E+02 0.01 27.1 19.4 71 319-389 196-269 (306)
334 TIGR03679 arCOG00187 arCOG0018 38.6 2.7E+02 0.0059 26.9 10.0 31 10-45 2-33 (218)
335 TIGR00289 conserved hypothetic 38.4 3.9E+02 0.0085 26.1 11.2 94 7-130 2-95 (222)
336 KOG0660 Mitogen-activated prot 38.4 21 0.00046 37.2 2.2 34 460-494 21-56 (359)
337 TIGR00364 exsB protein. This p 38.0 1.9E+02 0.0041 27.3 8.6 21 110-130 101-121 (201)
338 KOG0249 LAR-interacting protei 37.8 7E+02 0.015 28.9 16.0 24 406-429 226-249 (916)
339 PF13094 CENP-Q: CENP-Q, a CEN 37.8 2.1E+02 0.0046 26.1 8.7 43 346-388 33-75 (160)
340 PF15070 GOLGA2L5: Putative go 37.4 6.7E+02 0.015 28.5 19.0 71 338-408 158-228 (617)
341 KOG1850 Myosin-like coiled-coi 36.6 5.1E+02 0.011 26.9 17.7 59 345-404 121-179 (391)
342 PF02601 Exonuc_VII_L: Exonucl 36.6 4.7E+02 0.01 26.6 13.2 26 452-479 262-287 (319)
343 KOG3859 Septins (P-loop GTPase 36.4 5E+02 0.011 26.8 12.4 32 300-333 324-355 (406)
344 PF13874 Nup54: Nucleoporin co 36.3 2.9E+02 0.0062 24.9 9.0 45 354-398 44-88 (141)
345 PRK04406 hypothetical protein; 36.2 2.3E+02 0.005 22.8 7.9 41 375-415 11-51 (75)
346 COG2086 FixA Electron transfer 36.2 1.7E+02 0.0036 29.5 8.1 79 15-130 36-121 (260)
347 TIGR01010 BexC_CtrB_KpsE polys 36.2 5.1E+02 0.011 26.9 14.2 14 391-404 216-229 (362)
348 PRK08745 ribulose-phosphate 3- 35.9 3.2E+02 0.0068 26.8 9.9 25 106-130 178-202 (223)
349 KOG0582 Ste20-like serine/thre 35.7 32 0.0007 37.1 3.1 29 466-495 31-61 (516)
350 PF10211 Ax_dynein_light: Axon 35.7 3.9E+02 0.0085 25.4 14.8 15 286-300 86-100 (189)
351 PF05266 DUF724: Protein of un 35.4 4E+02 0.0088 25.4 14.2 12 286-297 88-99 (190)
352 PRK00143 mnmA tRNA-specific 2- 35.3 2.8E+02 0.006 28.9 10.0 34 6-44 1-34 (346)
353 PTZ00121 MAEBL; Provisional 35.3 1E+03 0.022 30.1 21.2 8 155-162 856-863 (2084)
354 KOG0578 p21-activated serine/t 35.1 37 0.0008 37.5 3.5 34 467-501 279-315 (550)
355 PRK02793 phi X174 lysis protei 35.1 2.3E+02 0.005 22.6 7.4 41 375-415 8-48 (72)
356 KOG4661 Hsp27-ERE-TATA-binding 34.9 5.6E+02 0.012 28.7 12.1 8 352-359 644-651 (940)
357 PF06005 DUF904: Protein of un 34.8 2.4E+02 0.0052 22.6 10.1 23 404-426 40-62 (72)
358 PF12072 DUF3552: Domain of un 34.6 4.2E+02 0.009 25.3 18.0 17 342-358 66-82 (201)
359 PF07795 DUF1635: Protein of u 34.4 2.1E+02 0.0044 28.0 8.0 17 358-374 44-60 (214)
360 PF06409 NPIP: Nuclear pore co 34.2 4.8E+02 0.01 25.9 10.8 34 386-419 138-171 (265)
361 KOG4807 F-actin binding protei 34.1 6.1E+02 0.013 27.1 14.5 10 112-121 73-82 (593)
362 KOG0200 Fibroblast/platelet-de 33.6 36 0.00077 38.4 3.3 27 468-495 303-338 (609)
363 PRK00846 hypothetical protein; 33.6 2.6E+02 0.0057 22.7 7.5 39 375-413 13-51 (77)
364 KOG2041 WD40 repeat protein [G 33.6 42 0.00091 38.2 3.6 74 95-177 177-252 (1189)
365 PF07106 TBPIP: Tat binding pr 33.6 3.8E+02 0.0083 24.6 12.0 51 349-399 81-133 (169)
366 PF06419 COG6: Conserved oligo 33.6 5.1E+02 0.011 29.4 12.4 55 366-420 36-90 (618)
367 TIGR02231 conserved hypothetic 33.5 5.1E+02 0.011 28.5 12.3 36 364-399 127-162 (525)
368 KOG4674 Uncharacterized conser 33.5 1.2E+03 0.025 30.2 17.7 97 326-432 1039-1135(1822)
369 COG2112 Predicted Ser/Thr prot 33.1 50 0.0011 31.7 3.6 30 466-496 27-56 (201)
370 TIGR00273 iron-sulfur cluster- 33.1 1.1E+02 0.0023 33.2 6.6 61 68-129 37-97 (432)
371 PF06156 DUF972: Protein of un 32.8 3.1E+02 0.0067 23.7 8.2 36 380-415 13-48 (107)
372 COG2102 Predicted ATPases of P 32.7 3.6E+02 0.0078 26.5 9.5 94 7-130 2-96 (223)
373 KOG0247 Kinesin-like protein [ 32.4 8.5E+02 0.018 28.3 14.6 35 347-381 541-575 (809)
374 KOG0979 Structural maintenance 32.3 9.6E+02 0.021 28.9 18.6 141 281-432 207-347 (1072)
375 PRK09722 allulose-6-phosphate 31.7 3.6E+02 0.0078 26.5 9.6 24 106-129 176-199 (229)
376 PF13870 DUF4201: Domain of un 31.7 4.2E+02 0.0092 24.5 13.8 42 392-433 94-135 (177)
377 KOG1962 B-cell receptor-associ 31.6 5E+02 0.011 25.4 10.7 23 404-426 180-202 (216)
378 KOG0592 3-phosphoinositide-dep 31.6 24 0.00052 38.9 1.4 31 463-494 75-107 (604)
379 PRK11281 hypothetical protein; 31.5 8E+02 0.017 30.1 14.0 102 317-418 57-178 (1113)
380 PRK06569 F0F1 ATP synthase sub 31.3 4.3E+02 0.0093 24.5 13.3 19 344-362 66-84 (155)
381 TIGR03573 WbuX N-acetyl sugar 31.2 3.7E+02 0.0079 28.0 10.1 23 108-130 148-170 (343)
382 PF01902 ATP_bind_4: ATP-bindi 30.7 4.3E+02 0.0093 25.8 9.8 93 7-129 2-94 (218)
383 COG2900 SlyX Uncharacterized p 30.7 2.9E+02 0.0062 22.2 7.0 25 375-399 8-32 (72)
384 PF04012 PspA_IM30: PspA/IM30 30.4 4.9E+02 0.011 24.9 17.2 16 349-364 100-115 (221)
385 TIGR00420 trmU tRNA (5-methyla 30.3 6E+02 0.013 26.6 11.5 33 6-43 1-33 (352)
386 KOG1853 LIS1-interacting prote 30.3 5.8E+02 0.012 25.6 17.5 127 278-422 47-180 (333)
387 PF14197 Cep57_CLD_2: Centroso 29.8 2.8E+02 0.0061 21.9 9.4 48 373-420 10-57 (69)
388 PF09728 Taxilin: Myosin-like 29.8 6.3E+02 0.014 26.0 20.3 127 287-431 138-265 (309)
389 PRK15178 Vi polysaccharide exp 29.7 7.6E+02 0.016 26.8 15.0 73 337-410 233-307 (434)
390 PF05667 DUF812: Protein of un 29.6 8.7E+02 0.019 27.5 19.4 30 94-124 84-113 (594)
391 PF06156 DUF972: Protein of un 29.3 3E+02 0.0065 23.8 7.5 33 347-379 8-40 (107)
392 PF05781 MRVI1: MRVI1 protein; 29.3 8.4E+02 0.018 27.2 14.4 38 392-432 284-321 (538)
393 PF05911 DUF869: Plant protein 29.3 9.8E+02 0.021 28.0 20.2 61 341-401 86-146 (769)
394 cd06409 PB1_MUG70 The MUG70 pr 29.0 1E+02 0.0022 25.6 4.4 37 2-45 50-86 (86)
395 PRK08576 hypothetical protein; 29.0 3E+02 0.0065 29.9 9.1 32 6-42 235-266 (438)
396 PF04799 Fzo_mitofusin: fzo-li 28.8 5E+02 0.011 24.5 9.4 45 344-388 106-150 (171)
397 PRK01565 thiamine biosynthesis 28.6 6.2E+02 0.013 26.9 11.5 34 5-43 176-209 (394)
398 KOG0585 Ca2+/calmodulin-depend 28.5 57 0.0012 35.6 3.5 36 459-495 95-132 (576)
399 TIGR02449 conserved hypothetic 28.4 3E+02 0.0064 21.7 8.5 48 363-410 9-56 (65)
400 KOG2412 Nuclear-export-signal 28.3 8.7E+02 0.019 27.1 13.6 10 289-298 169-178 (591)
401 PF04880 NUDE_C: NUDE protein, 28.3 86 0.0019 29.4 4.3 48 328-377 2-53 (166)
402 PF07111 HCR: Alpha helical co 28.1 9.8E+02 0.021 27.6 19.3 8 286-293 75-82 (739)
403 KOG0993 Rab5 GTPase effector R 28.1 7.8E+02 0.017 26.5 13.1 41 301-343 65-105 (542)
404 PF06295 DUF1043: Protein of u 27.9 3.6E+02 0.0077 23.9 8.1 23 343-365 28-50 (128)
405 KOG0610 Putative serine/threon 27.8 51 0.0011 35.3 3.0 31 463-494 79-111 (459)
406 KOG1989 ARK protein kinase fam 27.7 52 0.0011 37.9 3.3 32 462-494 38-71 (738)
407 PRK14561 hypothetical protein; 27.6 3.9E+02 0.0085 25.2 8.9 31 7-43 2-32 (194)
408 KOG0946 ER-Golgi vesicle-tethe 27.5 7E+02 0.015 29.3 11.7 37 341-377 686-722 (970)
409 PF10805 DUF2730: Protein of u 27.4 4E+02 0.0086 22.8 9.5 18 381-398 71-88 (106)
410 COG1842 PspA Phage shock prote 27.2 6.1E+02 0.013 24.9 17.2 9 275-283 28-36 (225)
411 KOG4571 Activating transcripti 27.2 3.8E+02 0.0083 27.4 8.8 9 149-157 98-106 (294)
412 PTZ00267 NIMA-related protein 26.9 61 0.0013 35.1 3.6 31 463-494 69-102 (478)
413 KOG0971 Microtubule-associated 26.7 1.2E+03 0.025 28.0 20.3 12 463-474 604-615 (1243)
414 KOG2129 Uncharacterized conser 26.6 5.8E+02 0.012 27.5 10.2 78 347-424 139-222 (552)
415 cd01998 tRNA_Me_trans tRNA met 26.6 6.3E+02 0.014 26.3 10.9 32 7-43 1-32 (349)
416 PF14282 FlxA: FlxA-like prote 26.4 4.1E+02 0.0089 22.7 8.4 13 359-371 24-36 (106)
417 PRK14127 cell division protein 26.2 2.8E+02 0.006 24.1 6.7 39 343-381 26-64 (109)
418 cd07653 F-BAR_CIP4-like The F- 26.1 6.2E+02 0.013 24.6 18.7 22 349-370 128-149 (251)
419 PRK01156 chromosome segregatio 26.0 1.1E+03 0.025 27.7 19.4 131 287-431 583-723 (895)
420 PF08549 SWI-SNF_Ssr4: Fungal 26.0 1.4E+02 0.003 33.9 6.0 34 336-371 362-395 (669)
421 PF05557 MAD: Mitotic checkpoi 26.0 23 0.00049 40.9 0.0 44 327-370 108-151 (722)
422 PF10186 Atg14: UV radiation r 25.9 6.5E+02 0.014 24.8 17.6 6 454-459 195-200 (302)
423 PRK10929 putative mechanosensi 25.9 1.3E+03 0.028 28.3 17.7 19 282-300 63-81 (1109)
424 PRK08091 ribulose-phosphate 3- 25.7 5.9E+02 0.013 25.1 9.8 25 106-130 186-210 (228)
425 KOG0986 G protein-coupled rece 25.6 16 0.00035 39.6 -1.2 34 460-494 184-219 (591)
426 PRK06395 phosphoribosylamine-- 25.6 2.9E+02 0.0062 29.8 8.4 22 6-30 3-24 (435)
427 PF14193 DUF4315: Domain of un 25.6 1.9E+02 0.004 23.9 5.3 26 358-383 5-30 (83)
428 COG2900 SlyX Uncharacterized p 25.5 3.6E+02 0.0078 21.7 7.7 48 378-425 4-51 (72)
429 PF10473 CENP-F_leu_zip: Leuci 25.4 5.2E+02 0.011 23.5 16.5 43 355-397 74-116 (140)
430 PRK10929 putative mechanosensi 25.4 1.3E+03 0.029 28.2 17.1 28 374-401 264-291 (1109)
431 PF02050 FliJ: Flagellar FliJ 25.3 3.9E+02 0.0084 22.0 14.4 53 369-421 46-98 (123)
432 COG1382 GimC Prefoldin, chaper 25.2 2.6E+02 0.0056 24.8 6.4 31 365-395 17-47 (119)
433 PRK06231 F0F1 ATP synthase sub 25.1 6.2E+02 0.013 24.3 13.7 24 343-366 96-119 (205)
434 KOG1465 Translation initiation 24.9 1.3E+02 0.0028 31.0 5.1 44 119-164 229-272 (353)
435 PF11802 CENP-K: Centromere-as 24.8 7.4E+02 0.016 25.1 12.3 22 406-427 157-178 (268)
436 PF13870 DUF4201: Domain of un 24.8 5.6E+02 0.012 23.7 12.4 68 350-417 66-133 (177)
437 COG0036 Rpe Pentose-5-phosphat 24.7 3.3E+02 0.0072 26.7 7.7 25 106-130 176-200 (220)
438 KOG4403 Cell surface glycoprot 24.7 9.2E+02 0.02 26.2 14.7 19 461-480 447-465 (575)
439 PF05529 Bap31: B-cell recepto 24.5 4.3E+02 0.0094 24.8 8.5 22 349-370 156-177 (192)
440 cd01985 ETF The electron trans 24.5 5.6E+02 0.012 23.5 11.9 58 108-172 79-138 (181)
441 COG3879 Uncharacterized protei 24.4 4.5E+02 0.0098 26.2 8.6 25 347-371 57-81 (247)
442 cd03364 TOPRIM_DnaG_primases T 24.4 2E+02 0.0042 22.8 5.3 32 6-38 44-75 (79)
443 PF09730 BicD: Microtubule-ass 24.3 1.2E+03 0.025 27.2 20.0 45 363-407 123-167 (717)
444 KOG0983 Mitogen-activated prot 24.3 99 0.0021 31.7 4.1 27 468-495 99-127 (391)
445 PRK13169 DNA replication intia 24.2 4.8E+02 0.01 22.7 8.1 36 380-415 13-48 (110)
446 PRK08305 spoVFB dipicolinate s 24.1 1.6E+02 0.0035 28.3 5.4 36 1-38 1-37 (196)
447 PF07851 TMPIT: TMPIT-like pro 24.1 8.4E+02 0.018 25.5 11.5 10 291-300 14-23 (330)
448 PF09766 FimP: Fms-interacting 24.1 3.4E+02 0.0075 28.5 8.4 54 338-391 99-152 (355)
449 KOG2991 Splicing regulator [RN 23.9 5.1E+02 0.011 26.0 8.8 65 345-409 106-170 (330)
450 PHA03210 serine/threonine kina 23.8 48 0.0011 36.2 2.1 23 460-483 147-169 (501)
451 PRK10803 tol-pal system protei 23.7 4.3E+02 0.0093 26.4 8.7 43 344-386 58-100 (263)
452 KOG1899 LAR transmembrane tyro 23.6 1E+03 0.022 27.2 11.7 20 327-346 154-173 (861)
453 PRK13169 DNA replication intia 23.5 3.7E+02 0.0079 23.4 7.0 38 343-380 4-41 (110)
454 KOG3915 Transcription regulato 23.4 7.6E+02 0.016 27.0 10.5 25 326-353 517-541 (641)
455 PRK10799 metal-binding protein 23.3 92 0.002 30.8 3.8 29 5-41 35-63 (247)
456 PF02568 ThiI: Thiamine biosyn 23.3 6.7E+02 0.015 24.0 9.8 36 5-45 3-38 (197)
457 PF09738 DUF2051: Double stran 23.0 8.4E+02 0.018 25.1 10.9 75 356-430 79-153 (302)
458 PRK01269 tRNA s(4)U8 sulfurtra 23.0 9.7E+02 0.021 26.1 12.0 34 5-43 177-210 (482)
459 PF08606 Prp19: Prp19/Pso4-lik 22.9 4E+02 0.0087 21.3 8.7 36 392-427 32-67 (70)
460 PF05262 Borrelia_P83: Borreli 22.9 1.1E+03 0.023 26.2 16.6 12 35-46 49-60 (489)
461 KOG3091 Nuclear pore complex, 22.8 1.1E+03 0.023 26.1 11.6 26 357-382 379-404 (508)
462 KOG0984 Mitogen-activated prot 22.7 54 0.0012 32.2 1.9 33 461-494 46-80 (282)
463 KOG0977 Nuclear envelope prote 22.7 1.1E+03 0.024 26.4 19.6 14 449-462 240-253 (546)
464 KOG0639 Transducin-like enhanc 22.6 7.3E+02 0.016 27.6 10.3 31 347-377 47-91 (705)
465 KOG2441 mRNA splicing factor/p 22.3 5.6E+02 0.012 27.4 9.2 87 273-371 280-378 (506)
466 PF09744 Jnk-SapK_ap_N: JNK_SA 22.3 6.3E+02 0.014 23.4 14.6 8 280-287 32-39 (158)
467 PRK14474 F0F1 ATP synthase sub 22.2 7.8E+02 0.017 24.4 13.7 8 392-399 119-126 (250)
468 PRK09841 cryptic autophosphory 22.2 1.2E+03 0.027 26.8 13.8 19 283-301 239-257 (726)
469 KOG4677 Golgi integral membran 22.1 1.1E+03 0.023 25.9 15.8 48 353-400 308-355 (554)
470 PF10481 CENP-F_N: Cenp-F N-te 22.0 8.5E+02 0.018 24.8 10.6 35 365-399 85-119 (307)
471 KOG0587 Traf2- and Nck-interac 22.0 64 0.0014 37.7 2.6 43 452-495 10-54 (953)
472 PF13095 FTA2: Kinetochore Sim 21.7 1.2E+02 0.0026 29.4 4.1 43 444-492 25-68 (207)
473 PF03148 Tektin: Tektin family 21.6 9.7E+02 0.021 25.3 12.4 81 324-417 206-286 (384)
474 KOG3054 Uncharacterized conser 21.6 5.2E+02 0.011 25.8 8.3 62 277-350 117-178 (299)
475 PF02403 Seryl_tRNA_N: Seryl-t 21.5 4.9E+02 0.011 21.8 9.3 66 344-409 33-101 (108)
476 TIGR03545 conserved hypothetic 21.4 7.2E+02 0.016 27.9 10.6 94 340-433 168-263 (555)
477 KOG4643 Uncharacterized coiled 21.4 1.5E+03 0.032 27.4 20.1 139 287-431 382-537 (1195)
478 TIGR02852 spore_dpaB dipicolin 21.2 1.6E+02 0.0035 28.0 4.8 34 6-40 1-34 (187)
479 PF11221 Med21: Subunit 21 of 21.0 6E+02 0.013 22.9 8.4 74 353-426 68-141 (144)
480 PRK11281 hypothetical protein; 21.0 1.6E+03 0.035 27.6 17.4 159 270-429 66-239 (1113)
481 PRK10636 putative ABC transpor 20.9 6.6E+02 0.014 28.5 10.5 77 340-416 549-632 (638)
482 COG1540 Uncharacterized protei 20.9 6.5E+02 0.014 25.1 8.8 98 14-130 41-147 (252)
483 TIGR02113 coaC_strep phosphopa 20.8 1.6E+02 0.0034 27.7 4.6 33 6-40 1-33 (177)
484 KOG0982 Centrosomal protein Nu 20.8 1.1E+03 0.024 25.6 18.6 134 290-429 252-393 (502)
485 PRK14057 epimerase; Provisiona 20.7 5.5E+02 0.012 25.8 8.6 94 4-128 129-222 (254)
486 KOG4603 TBP-1 interacting prot 20.7 7.2E+02 0.016 23.5 9.7 67 354-420 79-147 (201)
487 PF02994 Transposase_22: L1 tr 20.7 3.2E+02 0.0068 28.9 7.3 102 325-426 83-188 (370)
488 TIGR02338 gimC_beta prefoldin, 20.6 5.4E+02 0.012 21.9 10.8 69 347-415 20-107 (110)
489 TIGR01843 type_I_hlyD type I s 20.6 9.6E+02 0.021 24.9 18.1 133 285-421 138-271 (423)
490 KOG2891 Surface glycoprotein [ 20.6 9.1E+02 0.02 24.6 16.4 118 302-419 321-444 (445)
491 PF02050 FliJ: Flagellar FliJ 20.5 4.9E+02 0.011 21.4 13.2 89 343-431 1-94 (123)
492 PF11172 DUF2959: Protein of u 20.5 7.8E+02 0.017 23.8 17.7 138 289-427 62-201 (201)
493 PF02388 FemAB: FemAB family; 20.4 4.9E+02 0.011 27.7 8.9 58 346-407 241-298 (406)
494 PF07889 DUF1664: Protein of u 20.4 6.2E+02 0.013 22.6 11.3 77 324-400 45-121 (126)
495 TIGR00486 YbgI_SA1388 dinuclea 20.3 1.4E+02 0.0031 29.5 4.4 33 1-41 32-64 (249)
496 PF02844 GARS_N: Phosphoribosy 20.3 2.9E+02 0.0063 23.6 5.7 89 7-124 2-90 (100)
497 KOG1235 Predicted unusual prot 20.2 1.1E+02 0.0024 34.1 3.9 39 456-496 157-196 (538)
498 PF07412 Geminin: Geminin; In 20.1 3.7E+02 0.008 26.0 6.9 54 340-394 115-168 (200)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.92 E-value=4.6e-24 Score=193.18 Aligned_cols=143 Identities=29% Similarity=0.426 Sum_probs=116.7
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+||||||+|+. |.+||+||++++...++.|++|||.++.+ +.+...+. ......+.+...+.++++|.+
T Consensus 1 ~ILVavD~S~~-s~~al~~a~~~a~~~~~~l~ll~v~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~ 69 (146)
T cd01989 1 SVAVAVDKDKK-SKNALKWALDNLATKGQTIVLVHVHPPIT---SIPSSSGK-------LEVASAYKQEEDKEAKELLLP 69 (146)
T ss_pred CEEEEecCccc-cHHHHHHHHHhccCCCCcEEEEEeccCcc---cCCCCccc-------hHHHHHHHHHHHHHHHHHHHH
Confidence 59999999998 99999999999998899999999987643 11111110 012234555567778899999
Q ss_pred HHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccc-cccchhcccCCCceEEEEEeC
Q 010658 87 YLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAV-SGSYFVHHHMPDYCELFIICG 163 (505)
Q Consensus 87 ~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~g-svs~~V~k~Ap~~C~V~vV~k 163 (505)
+...|. ++++++.++.+ ++|++.|+++|+++++|+||||++|++++ .+.+.| ||+.+|++++|++|+|+||++
T Consensus 70 ~~~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l--~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 70 YRCFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHF--SMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HHHHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCce--eecccCCchhHHHHhcCCCCceEEEEeC
Confidence 998886 66777777775 48999999999999999999999999887 666666 699999999999999999999
Q ss_pred C
Q 010658 164 G 164 (505)
Q Consensus 164 g 164 (505)
|
T Consensus 146 ~ 146 (146)
T cd01989 146 G 146 (146)
T ss_pred c
Confidence 8
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.82 E-value=1.5e-19 Score=163.27 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=104.9
Q ss_pred CCEEEEEecCCh--HhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDL--QDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDN 82 (505)
Q Consensus 5 ~~kIlVAVDgS~--~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 82 (505)
+++||||||+|+ . |.+|++||+..+.. .+.|++|||.++.. .+.. .. +.. ....+.+...+.+++
T Consensus 2 ~~~ILv~vD~S~~~~-s~~al~~A~~la~~-~~~l~llhv~~~~~----~~~~-~~-~~~-----~~~~~~~~~~~~~~~ 68 (142)
T PRK15456 2 YKTIIMPVDVFEMEL-SDKAVRHAEFLAQD-DGVIHLLHVLPGSA----SLSL-HR-FAA-----DVRRFEEHLQHEAEE 68 (142)
T ss_pred CccEEEeccCCchhH-HHHHHHHHHHHHhc-CCeEEEEEEecCcc----cccc-cc-ccc-----chhhHHHHHHHHHHH
Confidence 689999999995 6 99999999998876 46899999987642 1111 00 000 112344555666777
Q ss_pred HHHHHHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEE
Q 010658 83 LLSKYLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFI 160 (505)
Q Consensus 83 lL~~~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~v 160 (505)
.|.++..... +.++++.+..| +|++.|+++|+++++|+||||++|++ + .+.+.||++.+|++++| |||+|
T Consensus 69 ~l~~~~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~--~~~llGS~a~~v~~~a~--~pVLv 140 (142)
T PRK15456 69 RLQTMVSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-I--STHLLGSNASSVIRHAN--LPVLV 140 (142)
T ss_pred HHHHHHHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-c--cceecCccHHHHHHcCC--CCEEE
Confidence 7777776654 55667777765 89999999999999999999999965 5 56788999999999999 99999
Q ss_pred Ee
Q 010658 161 IC 162 (505)
Q Consensus 161 V~ 162 (505)
|.
T Consensus 141 V~ 142 (142)
T PRK15456 141 VR 142 (142)
T ss_pred eC
Confidence 84
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.81 E-value=6.1e-19 Score=159.05 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=101.7
Q ss_pred CCEEEEEecCChHh-HHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQD-GYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNL 83 (505)
Q Consensus 5 ~~kIlVAVDgS~~~-S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 83 (505)
+++||||||+|+.+ +.+|+.||++.+...++.|++|||+++.+ +.. ..+..+.... ... ....+.+.+.
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~---~~~-~~~~~~~~~~--~~~----~~~~~~~~~~ 71 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLP---YYA-SLGLAYSAEL--PAM----DDLKAEAKSQ 71 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCc---ccc-cccccccccc--hHH----HHHHHHHHHH
Confidence 58999999999973 47999999999999999999999987643 111 1110000000 101 1223344455
Q ss_pred HHHHHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEE
Q 010658 84 LSKYLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFII 161 (505)
Q Consensus 84 L~~~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV 161 (505)
|..+...+. ++.+++.+..| +|++.|+++|+++++|+||||+++ +++ .+.+.||++.+|++++| |||+||
T Consensus 72 l~~~~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~--~~~llGS~a~~vl~~a~--cpVlvV 143 (144)
T PRK15005 72 LEEIIKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDI--TTYLLGSNAAAVVRHAE--CSVLVV 143 (144)
T ss_pred HHHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCc--hheeecchHHHHHHhCC--CCEEEe
Confidence 555555444 45667777765 899999999999999999999984 455 67788999999999999 999998
Q ss_pred e
Q 010658 162 C 162 (505)
Q Consensus 162 ~ 162 (505)
.
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 3
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.80 E-value=4.1e-19 Score=161.01 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=104.2
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLL 84 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL 84 (505)
+++||||||+|+. |.+||.||+..+...+++|++|||.++.+ .+.+.. ..+. ...+.+...+.+.+.|
T Consensus 3 ~k~ILvavD~S~~-s~~al~~A~~lA~~~~a~l~llhV~~~~~--~~~~~~--~~~~-------~~~~~~~~~~~~~~~l 70 (142)
T PRK09982 3 YKHIGVAISGNEE-DALLVNKALELARHNDAHLTLIHIDDGLS--ELYPGI--YFPA-------TEDILQLLKNKSDNKL 70 (142)
T ss_pred ceEEEEEecCCcc-hHHHHHHHHHHHHHhCCeEEEEEEccCcc--hhchhh--hccc-------hHHHHHHHHHHHHHHH
Confidence 7899999999998 99999999999999999999999987642 111110 1111 0123334455666777
Q ss_pred HHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEeC
Q 010658 85 SKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICG 163 (505)
Q Consensus 85 ~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~k 163 (505)
.++...+...++++.+..| +|++.|+++|++.++|+||||++ ++++ .+.+ + ++.+|+++++ |||+||..
T Consensus 71 ~~~~~~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~--~~~~-~-va~~V~~~s~--~pVLvv~~ 139 (142)
T PRK09982 71 YKLTKNIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFI--NRLM-P-AYRGMINKMS--ADLLIVPF 139 (142)
T ss_pred HHHHHhcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHH--HHHH-H-HHHHHHhcCC--CCEEEecC
Confidence 7777655545577777776 89999999999999999999986 6665 5455 4 9999999998 99999964
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.76 E-value=4.9e-18 Score=153.57 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=95.0
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHH
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNL 83 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 83 (505)
.+++||||||+|+. |..||.||+.++...++.|++|||.++.+ .. . .+..+. ....+.+.......+.
T Consensus 2 ~~~~ILvavD~S~~-s~~al~~a~~la~~~~a~l~ll~v~~~~~---~~-~-~~~~~~------~~~~~~~~~~~~~~~~ 69 (144)
T PRK15118 2 AYKHILIAVDLSPE-SKVLVEKAVSMARPYNAKVSLIHVDVNYS---DL-Y-TGLIDV------NLGDMQKRISEETHHA 69 (144)
T ss_pred CceEEEEEccCChh-HHHHHHHHHHHHHhhCCEEEEEEEccChh---hh-h-hhhhhc------chHHHHHHHHHHHHHH
Confidence 47999999999999 99999999999988899999999943321 11 0 111110 0112222233334444
Q ss_pred HHHHHhhhccCccEEEE-EecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe
Q 010658 84 LSKYLGFCGKVKAEILK-VEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC 162 (505)
Q Consensus 84 L~~~~~~c~~v~ve~~v-ve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~ 162 (505)
|..+... .++.+...+ ..| +|++.|+++|+++++|+||||+++ +.+ .+ .||++.+|++++| |||+||.
T Consensus 70 l~~~~~~-~~~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~--~~--lgSva~~v~~~a~--~pVLvv~ 138 (144)
T PRK15118 70 LTELSTN-AGYPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQ-DFW--SK--LMSSARQLINTVH--VDMLIVP 138 (144)
T ss_pred HHHHHHh-CCCCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCcc-cHH--HH--HHHHHHHHHhhCC--CCEEEec
Confidence 5444321 144543333 344 899999999999999999999996 322 33 4799999999999 9999997
Q ss_pred C
Q 010658 163 G 163 (505)
Q Consensus 163 k 163 (505)
.
T Consensus 139 ~ 139 (144)
T PRK15118 139 L 139 (144)
T ss_pred C
Confidence 4
No 6
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.74 E-value=1.3e-17 Score=146.73 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=101.0
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+|+||||+|+. +++|++||+.++...++.|++|||.++.. + + . .....+.|+.
T Consensus 1 ~Ilv~vd~s~~-s~~al~~a~~la~~~~~~l~ll~v~~~~~-----~------~---~------------~~~~~~~l~~ 53 (124)
T cd01987 1 RILVCISGGPN-AERLIRRAARLADRLKAPWYVVYVETPRL-----N------R---L------------SEAERRRLAE 53 (124)
T ss_pred CEEEEECCCcc-hHHHHHHHHHHHHHhCCCEEEEEEecCcc-----c------c---C------------CHHHHHHHHH
Confidence 59999999998 99999999999998899999999976532 0 0 0 1123456677
Q ss_pred HHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEE
Q 010658 87 YLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFII 161 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV 161 (505)
+...+.+.+++..++.+ ++|+++|+++++++++|+||||+++++.+ .+.+.||++.+|++++ ..|+||||
T Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~--~~~~~Gs~~~~v~~~a-~~~~v~v~ 123 (124)
T cd01987 54 ALRLAEELGAEVVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRW--RELFRGSLVDRLLRRA-GNIDVHIV 123 (124)
T ss_pred HHHHHHHcCCEEEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchH--HHHhcccHHHHHHHhC-CCCeEEEe
Confidence 77777666666666554 58999999999999999999999998887 7789999999999999 24999997
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.70 E-value=3.5e-16 Score=138.13 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=103.1
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+||||||+++. +..+|.||...+...+..|+++||.++.+ .. .. .. .....+..++.+..
T Consensus 1 ~ILv~vd~s~~-~~~~l~~a~~la~~~~~~v~ll~v~~~~~---~~-~~------~~---------~~~~~~~~~~~~~~ 60 (132)
T cd01988 1 RILVPVANPNT-ARDLLELAAALARAQNGEIIPLNVIEVPN---HS-SP------SQ---------LEVNVQRARKLLRQ 60 (132)
T ss_pred CEEEecCCchh-HHHHHHHHHHHhhcCCCeEEEEEEEecCC---CC-Cc------ch---------hHHHHHHHHHHHHH
Confidence 59999999998 99999999999998899999999987642 00 00 00 01123445677777
Q ss_pred HHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe
Q 010658 87 YLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC 162 (505)
Q Consensus 87 ~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~ 162 (505)
+...+. ++.++..+..+ ++|.+.|+++++++++|+||||+++.+.+ ...+.||++.+|.+++| |+|++|.
T Consensus 61 ~~~~~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~--~~~~lGs~~~~v~~~~~--~pvlvv~ 132 (132)
T cd01988 61 AERIAASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL--RDRLFGGVIDQVLESAP--CDVAVVK 132 (132)
T ss_pred HHHHhhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc--cceecCchHHHHHhcCC--CCEEEeC
Confidence 777765 55666666553 48999999999999999999999998877 66778999999999999 9999883
No 8
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.69 E-value=5.6e-16 Score=135.95 Aligned_cols=137 Identities=16% Similarity=0.122 Sum_probs=94.8
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLL 84 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL 84 (505)
+++|+||+|+|+. +..|++||+.++...++.|++|||.++.. ..+... ........... ........
T Consensus 2 ~~~Ilv~~d~~~~-~~~al~~a~~la~~~~~~i~~l~v~~~~~---~~~~~~-------~~~~~~~~~~~--~~~~~~~~ 68 (140)
T PF00582_consen 2 YKRILVAIDGSEE-SRRALRFALELAKRSGAEITLLHVIPPPP---QYSFSA-------AEDEESEEEAE--EEEQARQA 68 (140)
T ss_dssp TSEEEEEESSSHH-HHHHHHHHHHHHHHHTCEEEEEEEEESCH---CHHHHH-------HHHHHHHHHHH--HHHHHHHH
T ss_pred CCEEEEEECCCHH-HHHHHHHHHHHHHhhCCeEEEEEeecccc---cccccc-------ccccccccccc--hhhhhhhH
Confidence 4899999999999 99999999999999999999999988753 111000 00000000000 00000000
Q ss_pred HHHHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe
Q 010658 85 SKYLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC 162 (505)
Q Consensus 85 ~~~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~ 162 (505)
.. ..+. +.......+.. +++++.|+++++++++|+||||+++++.+ .+.+.||++.+|++++| |||+||.
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~--~~~~~gs~~~~l~~~~~--~pVlvv~ 140 (140)
T PF00582_consen 69 EA--EEAEAEGGIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGL--ERLLFGSVAEKLLRHAP--CPVLVVP 140 (140)
T ss_dssp HH--HHHHHHTTSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTST--TTSSSHHHHHHHHHHTS--SEEEEEE
T ss_pred HH--HHHhhhccceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCc--cCCCcCCHHHHHHHcCC--CCEEEeC
Confidence 00 1222 33333333333 48999999999999999999999998877 66789999999999999 9999984
No 9
>PRK10116 universal stress protein UspC; Provisional
Probab=99.69 E-value=4e-16 Score=140.39 Aligned_cols=137 Identities=13% Similarity=0.120 Sum_probs=100.7
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHH
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNL 83 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 83 (505)
.+++||||+|+|.. +..||.+|+.++...+++|+++||+++.+ + +. . + .....+.+.+...++..+.
T Consensus 2 ~~~~ILv~~D~s~~-s~~al~~A~~lA~~~~a~l~ll~v~~~~~---~-~~--~-~-----~~~~~~~~~~~~~~~~~~~ 68 (142)
T PRK10116 2 SYSNILVAVAVTPE-SQQLLAKAVSIARPVNGKISLITLASDPE---M-YN--Q-F-----AAPMLEDLRSVMQEETQSF 68 (142)
T ss_pred CCceEEEEccCCcc-hHHHHHHHHHHHHHhCCEEEEEEEccCcc---c-ch--h-h-----hHHHHHHHHHHHHHHHHHH
Confidence 47999999999998 99999999999998899999999976532 1 10 0 1 1112234444455555666
Q ss_pred HHHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe
Q 010658 84 LSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC 162 (505)
Q Consensus 84 L~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~ 162 (505)
|..+... .++.....++.. ++|.+.|+++|++.++|+||||+++++.+ .+. +|++.+|+++++ |||+||.
T Consensus 69 l~~~~~~-~~~~~~~~~~~~--G~~~~~I~~~a~~~~~DLiV~g~~~~~~~--~~~--~s~a~~v~~~~~--~pVLvv~ 138 (142)
T PRK10116 69 LDKLIQD-ADYPIEKTFIAY--GELSEHILEVCRKHHFDLVICGNHNHSFF--SRA--SCSAKRVIASSE--VDVLLVP 138 (142)
T ss_pred HHHHHHh-cCCCeEEEEEec--CCHHHHHHHHHHHhCCCEEEEcCCcchHH--HHH--HHHHHHHHhcCC--CCEEEEe
Confidence 6665432 144444333332 48999999999999999999999998766 433 378999999999 9999996
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.64 E-value=1.9e-15 Score=153.34 Aligned_cols=144 Identities=12% Similarity=0.059 Sum_probs=107.6
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHH
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNL 83 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 83 (505)
.+++||||+|+|+. |..||.||+..+...++.|++|||+++.+ .+.+ +.. ........++...+..++.
T Consensus 2 ~~~~ILv~~D~s~~-~~~al~~a~~lA~~~~a~l~ll~v~~~~~----~~~~-~~~-----~~~~~~~~~~~~~~~~~~~ 70 (305)
T PRK11175 2 KYQNILVVIDPNQD-DQPALRRAVYLAQRNGGKITAFLPIYDFS----YEMT-TLL-----SPDEREAMRQGVISQRTAW 70 (305)
T ss_pred CcceEEEEcCCCcc-ccHHHHHHHHHHHhcCCCEEEEEeccCch----hhhh-ccc-----chhHHHHHHHHHHHHHHHH
Confidence 47899999999999 99999999999999999999999976532 1111 111 1111112222223334556
Q ss_pred HHHHHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEE
Q 010658 84 LSKYLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFII 161 (505)
Q Consensus 84 L~~~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV 161 (505)
|+.+...+. ++.+++.++.. ++|.+.|+++|.++++|+||||++|.+.+ .+.+.||++..|++++| ||||+|
T Consensus 71 l~~~~~~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~--~~~~~gs~~~~l~~~~~--~pvlvv 144 (305)
T PRK11175 71 IREQAKPYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKL--ESVIFTPTDWHLLRKCP--CPVLMV 144 (305)
T ss_pred HHHHHHHHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHH--HhhccChhHHHHHhcCC--CCEEEe
Confidence 666665554 56666666543 48999999999999999999999998776 77888999999999999 999999
Q ss_pred eCC
Q 010658 162 CGG 164 (505)
Q Consensus 162 ~kg 164 (505)
..+
T Consensus 145 ~~~ 147 (305)
T PRK11175 145 KDQ 147 (305)
T ss_pred ccc
Confidence 864
No 11
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.56 E-value=7.4e-14 Score=121.25 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=102.8
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+|+||+|+++. +..++.||+..+...++.|+++||.++.. .. +. .+........++.|..
T Consensus 1 ~ilv~i~~~~~-~~~~l~~a~~~a~~~~~~i~~l~v~~~~~---~~--~~--------------~~~~~~~~~~~~~l~~ 60 (130)
T cd00293 1 RILVAVDGSEE-SERALRWAARLARRLGAELVLLHVVDPPP---SS--AA--------------ELAELLEEEARALLEA 60 (130)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHHHhcCCEEEEEEEecCCC---Cc--ch--------------hHHHHHHHHHHHHHHH
Confidence 59999999998 99999999999999999999999976642 00 00 1222345566788888
Q ss_pred HHhhhc--cCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEE
Q 010658 87 YLGFCG--KVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFII 161 (505)
Q Consensus 87 ~~~~c~--~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV 161 (505)
+...|. ++.+...+..+ +++++|+++++++++|+||||+++.+.+ .+.+.|+++.++.++++ |||++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~--~~~~~~~~~~~ll~~~~--~pvliv 130 (130)
T cd00293 61 LREALAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGL--RRLLLGSVAERVLRHAP--CPVLVV 130 (130)
T ss_pred HHHHHhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcc--ceeeeccHHHHHHhCCC--CCEEeC
Confidence 888875 55565565554 6799999999999999999999988776 56778999999999987 999985
No 12
>PRK11175 universal stress protein UspE; Provisional
Probab=99.55 E-value=4.2e-14 Score=143.51 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=100.2
Q ss_pred CCEEEEEecCChHh------HHHHHHHHHHhhhcC-CCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQD------GYRTLDWTIRKWKAQ-SISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQ 77 (505)
Q Consensus 5 ~~kIlVAVDgS~~~------S~~AL~WAl~~~~~~-g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~ 77 (505)
.++|+||+|+|... +..||++|+..+... ++.|++|||.++.+ .... ...+. ... ..+.+..+
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~----~~~~-~~~~~--~~~---~~~~~~~~ 221 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTP----INIA-IELPE--FDP---SVYNDAIR 221 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcc----hhcc-ccccc--cch---hhHHHHHH
Confidence 58999999998752 257999999999887 88999999986532 1100 11111 011 12333333
Q ss_pred HHHHHHHHHHHhhhccCcc-EEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCce
Q 010658 78 GKTDNLLSKYLGFCGKVKA-EILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYC 156 (505)
Q Consensus 78 ~~~~~lL~~~~~~c~~v~v-e~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C 156 (505)
....+.+..+...+ ++.. .+.+..| +|.+.|+++|+++++|+||||++|++++ .+.+.||++.+|++++| |
T Consensus 222 ~~~~~~l~~~~~~~-~~~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~~~~~~--~~~llGS~a~~v~~~~~--~ 293 (305)
T PRK11175 222 GQHLLAMKALRQKF-GIDEEQTHVEEG---LPEEVIPDLAEHLDAELVILGTVGRTGL--SAAFLGNTAEHVIDHLN--C 293 (305)
T ss_pred HHHHHHHHHHHHHh-CCChhheeeccC---CHHHHHHHHHHHhCCCEEEECCCccCCC--cceeecchHHHHHhcCC--C
Confidence 34444555554433 3333 2344443 8999999999999999999999999888 78899999999999999 9
Q ss_pred EEEEEeC
Q 010658 157 ELFIICG 163 (505)
Q Consensus 157 ~V~vV~k 163 (505)
+|++|..
T Consensus 294 pVLvv~~ 300 (305)
T PRK11175 294 DLLAIKP 300 (305)
T ss_pred CEEEEcC
Confidence 9999964
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.47 E-value=1.7e-12 Score=116.81 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=106.2
Q ss_pred CCCCCCEEEEEec-CChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHH
Q 010658 1 MDTEEPKVYVAVG-NDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGK 79 (505)
Q Consensus 1 M~~~~~kIlVAVD-gS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~ 79 (505)
|...+++|++++| +++. +..|+.+|+..+...+..+.++||.++.. ............ . ...........
T Consensus 1 ~~~~~~~il~~~d~~s~~-~~~a~~~a~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~--~---~~~~~~~~~~~ 71 (154)
T COG0589 1 MPAMYKKILVAVDVGSEA-AEKALEEAVALAKRLGAPLILLVVIDPLE---PTALVSVALADA--P---IPLSEEELEEE 71 (154)
T ss_pred CccccceEEEEeCCCCHH-HHHHHHHHHHHHHhcCCeEEEEEEecccc---cccccccccccc--h---hhhhHHHHHHH
Confidence 3455789999999 9999 99999999999998899999999987642 111110000000 0 01112223444
Q ss_pred HHHHHHHHHhhhc--cCc-cEEEEEecCCCCh-HHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCc
Q 010658 80 TDNLLSKYLGFCG--KVK-AEILKVEKSDEPV-HKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDY 155 (505)
Q Consensus 80 ~~~lL~~~~~~c~--~v~-ve~~vve~~~~d~-~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~ 155 (505)
..+.+........ ++. ++..+..| +| .+.|++++.+.++|+||||++|++.+ ++.+.||++.+|++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l--~~~llGsvs~~v~~~~~-- 144 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGL--SRLLLGSVAEKVLRHAP-- 144 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccc--cceeeehhHHHHHhcCC--
Confidence 5566666665555 344 35566665 56 89999999999999999999998887 55789999999999999
Q ss_pred eEEEEEeC
Q 010658 156 CELFIICG 163 (505)
Q Consensus 156 C~V~vV~k 163 (505)
|+|++|..
T Consensus 145 ~pVlvv~~ 152 (154)
T COG0589 145 CPVLVVRS 152 (154)
T ss_pred CCEEEEcc
Confidence 99999874
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.30 E-value=2.2e-11 Score=126.29 Aligned_cols=106 Identities=9% Similarity=0.150 Sum_probs=76.5
Q ss_pred CCCCCEEEEEecCChHhHHHHHHHHHHhhhcC--CCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHH
Q 010658 2 DTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQ--SISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGK 79 (505)
Q Consensus 2 ~~~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~--g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~ 79 (505)
.+.++|||||||||+. |++|+.+|++.+... +++|++|||.++.. +.+. . . .....
T Consensus 2 ~~~ykkILVavDGSe~-S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~---~~~~------~----~--------~~~~~ 59 (357)
T PRK12652 2 MMAANRLLVPVADSVT-VRQTVAYAVESAEEAAETPTVHLVAAASGRA---VDPE------G----Q--------DELAA 59 (357)
T ss_pred CcccCeEEEEeCCCHH-HHHHHHHHHHHHHhcCCCCEEEEEEEecCcc---cccc------h----h--------HHHHH
Confidence 4568999999999999 999999999999874 58999999987632 1100 0 0 01122
Q ss_pred HHHHHHHHHhhh--------ccCccEEEEEecC-----CCChHHHHHHHHHHcCCCEEEEccC
Q 010658 80 TDNLLSKYLGFC--------GKVKAEILKVEKS-----DEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 80 ~~~lL~~~~~~c--------~~v~ve~~vve~~-----~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
.+++++.+...+ .++.+++.++.++ .++|++.|+++|++++||+||||-.
T Consensus 60 ~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 60 AEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 233344333332 2677788777742 1599999999999999999999975
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=98.79 E-value=4.7e-08 Score=113.55 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=99.7
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLL 84 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL 84 (505)
.++|||+|++|+. |.+++++|.+.+.+.++.+++|||..+.. . .+.. + ...-+
T Consensus 250 ~eriLV~v~~~~~-~~~lIr~~~rlA~~~~a~~~~l~V~~~~~-----~---------~~~~-----------~-~~~~l 302 (895)
T PRK10490 250 RDAILLCIGHNTG-SEKLVRTAARLAARLGSVWHAVYVETPRL-----H---------RLPE-----------K-KRRAI 302 (895)
T ss_pred CCeEEEEECCCcc-hHHHHHHHHHHHHhcCCCEEEEEEecCCc-----C---------cCCH-----------H-HHHHH
Confidence 4689999999998 99999999999999999999999975531 0 0111 1 12234
Q ss_pred HHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEeCC
Q 010658 85 SKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGG 164 (505)
Q Consensus 85 ~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~kg 164 (505)
..+..+|+..++++..+.+ +||++.|++||.++||+.||||.++++.| ...||+++.+++.+| .-.|+||...
T Consensus 303 ~~~~~lA~~lGa~~~~~~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~----~~~~s~~~~l~r~~~-~idi~iv~~~ 375 (895)
T PRK10490 303 LSALRLAQELGAETATLSD--PAEEKAVLRYAREHNLGKIIIGRRASRRW----WRRESFADRLARLGP-DLDLVIVALD 375 (895)
T ss_pred HHHHHHHHHcCCEEEEEeC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC----ccCCCHHHHHHHhCC-CCCEEEEeCC
Confidence 4455678888888877776 58999999999999999999999987654 235788999999997 7899999643
No 16
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-08 Score=105.79 Aligned_cols=58 Identities=31% Similarity=0.559 Sum_probs=50.8
Q ss_pred ccccccHHHHHHHhhccccccccccCCCcceEEEEEEC-CcEEEEEEccCCCC--hhhhhcC
Q 010658 447 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLN-HASVAIKTLNNGLS--EEDFQAK 505 (505)
Q Consensus 447 ~~~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L~-g~~VAVK~L~~~~~--~~eF~~~ 505 (505)
..+.|+|.+|..||++|+..++||+|| ||+||||.|+ |+.||||++....+ ..+|..|
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Gg-fg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~E 121 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGG-FGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNE 121 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCC-CeEEEEEEECCCCEEEEEEecCCCCcchhHHHHH
Confidence 567899999999999999999999999 9999999995 68999999986443 5778754
No 17
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.53 E-value=6e-07 Score=99.60 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=107.4
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLL 84 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL 84 (505)
..+|+|+|++|+. |.+.++||.+.+.+.++..++|||..|.. +. ..+.....|
T Consensus 248 ~e~ilvcI~~~~~-~e~liR~a~RlA~~~~a~~~av~v~~~~~-----~~---------------------~~~~~~~~l 300 (890)
T COG2205 248 RERILVCISGSPG-SEKLIRRAARLASRLHAKWTAVYVETPEL-----HR---------------------LSEKEARRL 300 (890)
T ss_pred cceEEEEECCCCc-hHHHHHHHHHHHHHhCCCeEEEEEecccc-----cc---------------------ccHHHHHHH
Confidence 3789999999998 99999999999999999999999966532 00 011234557
Q ss_pred HHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEeCC
Q 010658 85 SKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGG 164 (505)
Q Consensus 85 ~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~kg 164 (505)
.....+|+..+.++.++.+ +|++++|++||..+++++||||.+.++.| ++.+.++...++.+.+| ...|++|..+
T Consensus 301 ~~~~~Lae~lGae~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw--~~~~~~~l~~~L~~~~~-~idv~ii~~~ 375 (890)
T COG2205 301 HENLRLAEELGAEIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRW--RRLFKGSLADRLAREAP-GIDVHIVALD 375 (890)
T ss_pred HHHHHHHHHhCCeEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHH--HHHhcccHHHHHHhcCC-CceEEEeeCC
Confidence 7777788888999999987 59999999999999999999999988877 56666888889999887 7889999876
Q ss_pred eE
Q 010658 165 KL 166 (505)
Q Consensus 165 kl 166 (505)
..
T Consensus 376 ~~ 377 (890)
T COG2205 376 AP 377 (890)
T ss_pred CC
Confidence 54
No 18
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.51 E-value=0.00039 Score=57.07 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=64.9
Q ss_pred EEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH
Q 010658 8 VYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKY 87 (505)
Q Consensus 8 IlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~ 87 (505)
|+||++|+.. |..++.||.+.. ..+..++++|+.
T Consensus 1 ilv~~sgg~d-S~~~l~~~~~~~-~~~~~~~~~~~~-------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLD-SSVLLHLAKRLK-SGGPEVVALVVV-------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHH-HHHHHHHHHHHH-hcCCCEEEEEeH--------------------------------------------
Confidence 6899999998 999999999876 445677778870
Q ss_pred HhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccc-cccchhcccCCCceEEEE
Q 010658 88 LGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAV-SGSYFVHHHMPDYCELFI 160 (505)
Q Consensus 88 ~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~g-svs~~V~k~Ap~~C~V~v 160 (505)
...+.|.++++++++|+||+|+++.... .....+ +++.++.+.++ |+|+.
T Consensus 35 -------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~--~~~~~~~~~~~~~~~~~~--~~vl~ 85 (86)
T cd01984 35 -------------------AFVRILKRLAAEEGADVIILGHNADDVA--GRRLGASANVLVVIKGAG--IPVLT 85 (86)
T ss_pred -------------------HHHHHHHHHHHHcCCCEEEEcCCchhhh--hhccCchhhhhhcccccC--CceeC
Confidence 1466777889999999999999986554 344445 67778888887 87763
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.09 E-value=0.046 Score=51.56 Aligned_cols=93 Identities=13% Similarity=0.230 Sum_probs=59.7
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+|+||+.|... |.-++.++.+.+...+..|.++||-.... +. ..+-.+.
T Consensus 1 ~v~va~SGG~D-S~~ll~ll~~~~~~~~~~v~~v~vd~g~~------------~~------------------~~~~~~~ 49 (189)
T TIGR02432 1 RILVAVSGGVD-SMALLHLLLKLQPKLKIRLIAAHVDHGLR------------PE------------------SDEEAEF 49 (189)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHHHHcCCCEEEEEeCCCCC------------hh------------------HHHHHHH
Confidence 58999999998 98888888776655566799999932210 00 0112334
Q ss_pred HHhhhccCccEEEEEecC--------CCChH--------HHHHHHHHHcCCCEEEEccCC
Q 010658 87 YLGFCGKVKAEILKVEKS--------DEPVH--------KLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~--------~~d~~--------~~Ive~a~~~~idlLVmGs~g 130 (505)
...+|...+++..++..+ +.++. ..|.++|.++|++.|+.|.+.
T Consensus 50 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 50 VQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred HHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 445565444444333321 11223 578889999999999999985
No 20
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=1.2 Score=50.09 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=10.6
Q ss_pred hhHHHHhhhhHHHHHhHHHHH
Q 010658 326 SRADQLESLTKEDVASRMEIQ 346 (505)
Q Consensus 326 ~~~~~~e~~~~~e~~~R~e~e 346 (505)
.|-.++|. .+|-.+|||+|
T Consensus 378 erQReiE~--qrEEerkkeie 396 (1118)
T KOG1029|consen 378 ERQREIER--QREEERKKEIE 396 (1118)
T ss_pred HHHHHHHH--HHHHHHHHHHH
Confidence 45556665 44445666665
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.25 E-value=0.11 Score=60.41 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCEEEEEecCChHhHHHHHHHHHH--hhhcCCCeEEEEEEeeCCC--CCcccccCCCCCCCCcCChHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIR--KWKAQSISIVILHVTYNIS--IKDFVYTPFGKLPATSLSDEKLEILKKYEQGKT 80 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~--~~~~~g~~IvllHV~~~~~--~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 80 (505)
+-+||++|-+.++ -...+.-+-. --.+..-.|+++|+++... .+.+++....+........ .....++.
T Consensus 458 elriL~cv~~~~~-v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~------~~~~~~~i 530 (832)
T PLN03159 458 ELRMLVCVHTPRN-VPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNR------TQAQSDHI 530 (832)
T ss_pred ceeEEEEeccCCc-HHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeeccccccccccc------ccccccHH
Confidence 4589999997665 4433332211 1122345799999987431 0111111100000000000 00012233
Q ss_pred HHHHHHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcc----cccccccchhcccCCCce
Q 010658 81 DNLLSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKS----RTAVSGSYFVHHHMPDYC 156 (505)
Q Consensus 81 ~~lL~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr----~~~gsvs~~V~k~Ap~~C 156 (505)
-..|+.|...+..+.++.......-.++.+.||.+|.+..+++||+|-+......++. ...+.+-..|+++|| |
T Consensus 531 ~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~Ap--C 608 (832)
T PLN03159 531 INAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAP--C 608 (832)
T ss_pred HHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCC--C
Confidence 3444555443335666665555444589999999999999999999998643321110 112334568999999 7
Q ss_pred EEEE-EeCC
Q 010658 157 ELFI-ICGG 164 (505)
Q Consensus 157 ~V~v-V~kg 164 (505)
+|-| |-||
T Consensus 609 sVgIlVDRg 617 (832)
T PLN03159 609 SVGILVDRG 617 (832)
T ss_pred CEEEEEeCC
Confidence 7754 4456
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.21 E-value=0.5 Score=48.74 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhHhHHHHhHHHH
Q 010658 407 EIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 407 ~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
++..+++.+..+.+.+..+.+.+
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 23
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=95.16 E-value=0.0085 Score=63.67 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=24.8
Q ss_pred ccccCCCcceEEEEEECCcEEEEEEcc
Q 010658 468 RLKCAGDWTNVYRGRLNHASVAIKTLN 494 (505)
Q Consensus 468 ~iG~gg~~G~VYkg~L~g~~VAVK~L~ 494 (505)
+||.|+ ||.||||.|++..||||++.
T Consensus 217 li~~Gr-fg~V~KaqL~~~~VAVKifp 242 (534)
T KOG3653|consen 217 LIGRGR-FGCVWKAQLDNRLVAVKIFP 242 (534)
T ss_pred HhhcCc-cceeehhhccCceeEEEecC
Confidence 789999 99999999999999999995
No 24
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.90 E-value=2.7 Score=37.64 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=63.8
Q ss_pred HHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 320 AICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 320 ~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
++-.=...+++++.-|-.|+-.=-+.=+.|...|+++..++.++..+......+...+...+. .+......++.
T Consensus 32 dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~--- 105 (132)
T PF07926_consen 32 DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEK--- 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH---
Confidence 333334578888999999987666666788888888888888888777777655554433332 23333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHhHHH
Q 010658 400 KAVIARAEIVKDIEELRRQRDVLHRRIEF 428 (505)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~r~~~~~~~e~ 428 (505)
++.++...++.|..|-..+..+++.
T Consensus 106 ----e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 106 ----ELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667777777777666666553
No 25
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=94.70 E-value=0.27 Score=46.26 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=49.2
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
||+|||-|-.. |...|....+.....+..+.++||..... +. ...-...
T Consensus 1 ki~va~SGG~D-S~~Ll~~l~~~~~~~~~~~~~~~vdh~~~------------~~------------------s~~~~~~ 49 (182)
T PF01171_consen 1 KILVAVSGGKD-SMALLHLLKELRRRNGIKLIAVHVDHGLR------------EE------------------SDEEAEF 49 (182)
T ss_dssp EEEEE--SSHH-HHHHHHHHHHHHTTTTTEEEEEEEE-STS------------CC------------------HHHHHHH
T ss_pred CEEEEEcCCHH-HHHHHHHHHHHHHhcCCCeEEEEEecCCC------------cc------------------cchhHHH
Confidence 79999999987 98555444454455667999999954311 00 0011223
Q ss_pred HHhhhccCccEEEEEecC-----CCCh--------HHHHHHHHHHcCCCEEEEccCC
Q 010658 87 YLGFCGKVKAEILKVEKS-----DEPV--------HKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~-----~~d~--------~~~Ive~a~~~~idlLVmGs~g 130 (505)
...+|...++...+...+ ..++ ...+.++|.++|++.|++|.+.
T Consensus 50 v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 50 VEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 344566444444433331 1121 1466679999999999999873
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.44 E-value=4.4 Score=39.99 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 358 EVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
..-+..+++..+|..+...+...+.++......+.+|+.+|......+..+...-.+.....+.+-..+..+
T Consensus 110 e~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L 181 (237)
T PF00261_consen 110 EAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDL 181 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444444333333333333333344443
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=5.8 Score=46.07 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Q 010658 365 ESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 365 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~ 430 (505)
.+..++..+.....+...++++....+.+...++........+++++++++...|..+-++...++
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~ 480 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLR 480 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566666777777777777788888878888999999999888876666655443
No 28
>PRK02224 chromosome segregation protein; Provisional
Probab=94.32 E-value=7.5 Score=45.60 Aligned_cols=7 Identities=0% Similarity=0.097 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 010658 21 RTLDWTI 27 (505)
Q Consensus 21 ~AL~WAl 27 (505)
.|+.||+
T Consensus 41 ~ai~~~l 47 (880)
T PRK02224 41 EACFFAL 47 (880)
T ss_pred HHHHHHh
Confidence 3444544
No 29
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=94.19 E-value=0.04 Score=60.48 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.3
Q ss_pred HhhccccccccccCCCcceEEEEEE------------------CCcEEEEEEccC
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL------------------NHASVAIKTLNN 495 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L------------------~g~~VAVK~L~~ 495 (505)
.+++|...++||+|+ ||.||+|.+ .++.||||++..
T Consensus 143 ~~d~F~i~~~LG~Gg-FG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~ 196 (507)
T PLN03224 143 SSDDFQLRDKLGGGN-FGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNM 196 (507)
T ss_pred cccCceEeeEeecCC-CeEEEEEEecccccchhhhhccccccccCceEEEEEecc
Confidence 467899999999999 999999974 245799999863
No 30
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=94.09 E-value=0.49 Score=44.19 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=56.7
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+|+||+.|... |.-++.++.......+..|.+|||..... +. ..+.++.
T Consensus 1 ~v~v~~SGG~D-S~vl~~l~~~~~~~~~~~v~~v~id~~~~------------~~------------------~~~~~~~ 49 (185)
T cd01992 1 KILVAVSGGPD-SMALLHLLSELKPRLGLRLVAVHVDHGLR------------PE------------------SDEEAAF 49 (185)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHHHHcCCcEEEEEecCCCC------------ch------------------HHHHHHH
Confidence 58999999998 88788777666554456799999932210 00 0122333
Q ss_pred HHhhhccCccEEEEE--e-cC--CCCh--------HHHHHHHHHHcCCCEEEEccCC
Q 010658 87 YLGFCGKVKAEILKV--E-KS--DEPV--------HKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 87 ~~~~c~~v~ve~~vv--e-~~--~~d~--------~~~Ive~a~~~~idlLVmGs~g 130 (505)
...+|...++...++ . .. +.++ ...+.++|.++|++.|+.|.+.
T Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~ 106 (185)
T cd01992 50 VADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHA 106 (185)
T ss_pred HHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 444455334443333 1 11 0010 1457789999999999999985
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.99 E-value=5.8 Score=45.65 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKA 401 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~ 401 (505)
....+.+|+.++++-++++..+.++..+...+..|..++..++..+.++.+++..|
T Consensus 388 RDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 388 RDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788889999999999999999999999999999999999999999988876
No 32
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.99 E-value=13 Score=42.78 Aligned_cols=25 Identities=12% Similarity=0.461 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLS 371 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~ 371 (505)
+..+.-.++|..+.+..+++.+.|.
T Consensus 431 ek~t~l~~~h~~lL~K~~di~kQle 455 (980)
T KOG0980|consen 431 EKYTELRQEHADLLRKYDDIQKQLE 455 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333333
No 33
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.93 E-value=3.6 Score=39.90 Aligned_cols=25 Identities=12% Similarity=-0.082 Sum_probs=18.3
Q ss_pred cccccHHHHHHHhhccccccccccC
Q 010658 448 FREYAAEDIRLATEDFSERFRLKCA 472 (505)
Q Consensus 448 ~~~~s~~el~~AT~~Fs~~~~iG~g 472 (505)
...|.+.++..-|-+.++..+-|+|
T Consensus 210 ~e~~~i~dl~~et~~l~p~die~~~ 234 (290)
T COG4026 210 PEEELISDLVKETLNLAPKDIEGQG 234 (290)
T ss_pred hHHHHHHHHHHHHhccCchhcccee
Confidence 3457888888888888877666543
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.78 E-value=9.9 Score=47.93 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=118.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 010658 274 EQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLK 353 (505)
Q Consensus 274 ~~~~~~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~ek 353 (505)
..+.......-+.+++|..|......+..+=.+++..+..+.|+-....++ |+.++|...-.|-+++-+....+.+..
T Consensus 1758 ~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Lea--rir~LE~~l~~E~~~~~e~~k~~rk~e 1835 (1930)
T KOG0161|consen 1758 EELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEA--RIRELESELEGEQRRKAEAIKGLRKKE 1835 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH--HHHHHHHHHhHhhhhhHHHhHHHHHHH
Confidence 334444445556777888888888777777788888888777765555554 999999999999988888889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHhh
Q 010658 354 EQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEK 432 (505)
Q Consensus 354 e~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~~ 432 (505)
..+.++-.++++-+.-+...++....|..++....+++.++|...............+++..+-.-+.+-+++..++.+
T Consensus 1836 r~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k 1914 (1930)
T KOG0161|consen 1836 RRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSK 1914 (1930)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999988888888888888888888888888888888877666555555555555555445555666666543
No 35
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=92.50 E-value=0.093 Score=57.57 Aligned_cols=39 Identities=36% Similarity=0.509 Sum_probs=29.9
Q ss_pred cccccHHHHHHHhhccccccccccCCCcceEEEEEECCcEEEEEEccC
Q 010658 448 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 495 (505)
Q Consensus 448 ~~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L~g~~VAVK~L~~ 495 (505)
+..+.+.++... ..||.|. ||+||||...| .||||+|+-
T Consensus 386 ~WeIp~~ev~l~-------~rIGsGs-FGtV~Rg~whG-dVAVK~Lnv 424 (678)
T KOG0193|consen 386 EWEIPPEEVLLG-------ERIGSGS-FGTVYRGRWHG-DVAVKLLNV 424 (678)
T ss_pred ccccCHHHhhcc-------ceecccc-ccceeeccccc-ceEEEEEec
Confidence 345666665433 3899999 99999999865 699999983
No 36
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.18 E-value=25 Score=42.81 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=18.0
Q ss_pred cCccEEEEEecCCCChHHHHHHHHHHcCCC
Q 010658 93 KVKAEILKVEKSDEPVHKLILDLVSRLTIT 122 (505)
Q Consensus 93 ~v~ve~~vve~~~~d~~~~Ive~a~~~~id 122 (505)
|-....+|+.. +.++...+++..+.++.
T Consensus 540 G~~l~~vVV~~--~~~a~~~i~~lk~~~~g 567 (1163)
T COG1196 540 GNRLQAVVVEN--EEVAKKAIEFLKENKAG 567 (1163)
T ss_pred ccccCCeeeCC--hHHHHHHHHHHhhcCCC
Confidence 44555666664 35778888887776543
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.17 E-value=6.3 Score=45.06 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 010658 328 ADQLESLTKEDVASRMEIQRDLDSLKEQ 355 (505)
Q Consensus 328 ~~~~e~~~~~e~~~R~e~ee~l~~eke~ 355 (505)
...+|..+.+|.++|-.+|..|..||..
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888877643
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.14 E-value=20 Score=44.66 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHhhcccccc
Q 010658 359 VIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMV 438 (505)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~~~~~~~~ 438 (505)
+..++++...++........++..++.+....+.+++.++......+..+.+.++.++.+...+...+..+.....
T Consensus 353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~---- 428 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQ---- 428 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3334444444444444444444444444444444444444443333444444444444443333333333322211
Q ss_pred ccccccccccccccHHHHHHHhhcccc
Q 010658 439 IRSSELSCAFREYAAEDIRLATEDFSE 465 (505)
Q Consensus 439 ~~~~~~~~~~~~~s~~el~~AT~~Fs~ 465 (505)
.+....|+..++.....+|..
T Consensus 429 ------~~~~~~~SdEeLe~~LenF~a 449 (1486)
T PRK04863 429 ------LCGLPDLTADNAEDWLEEFQA 449 (1486)
T ss_pred ------HhCCCCCCHHHHHHHHHHHHH
Confidence 123345777777777777764
No 39
>PRK09039 hypothetical protein; Validated
Probab=92.10 E-value=17 Score=37.96 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHhH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVK-DIEELRRQRDV 421 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~-~~~~l~~~r~~ 421 (505)
+..|+.+|....+...++..++.++..+..|+..|+..|..++....+...++......+..+.. +..+|.+-|..
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45566666665555555555555555444444444444444444444444444433333333322 24444444443
No 40
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=91.74 E-value=0.16 Score=52.56 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.7
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
-.+...+++|.|. ||.||+|.+ .+..||||+.-+
T Consensus 24 i~~~~~~liG~Gs-Fg~Vyq~~~~e~~~~vAIKKv~~ 59 (364)
T KOG0658|consen 24 ISYEAVRLIGSGS-FGVVYQAKLRETEEEVAIKKVLQ 59 (364)
T ss_pred EEEEeeEEEeecc-cceEEEEEEcCCCceeEEEEecC
Confidence 3456678999999 999999999 468999999864
No 41
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=91.70 E-value=0.17 Score=56.39 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=31.4
Q ss_pred HhhccccccccccCCCcceEEEEEE--C----CcEEEEEEccC
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL--N----HASVAIKTLNN 495 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L--~----g~~VAVK~L~~ 495 (505)
.+++|...+.||+|+ ||.||+|.+ + +..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~-FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGA-FGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCC-CeEEEEEEEcCCccccCcEEEEEEecc
Confidence 567899999999999 999999998 4 67999999853
No 42
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.61 E-value=7.8 Score=33.40 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 345 IQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 345 ~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
++..|..+|..++++..+.|.+...++.++.+.....+++.+....+.++...++
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888999999999888888888887777766655555555555444
No 43
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=91.32 E-value=1.8 Score=47.20 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=28.7
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.++|..-..||.|+ ||.||-+.- .|..+|+|+|.
T Consensus 140 ~~DFe~Lk~IgkGA-fGeVrLarKk~Tg~iyAmK~Lk 175 (550)
T KOG0605|consen 140 LDDFELLKVIGKGA-FGEVRLARKKDTGEIYAMKILK 175 (550)
T ss_pred cccchhheeecccc-ceeEEEEEEccCCcEEeeeccc
Confidence 44566667999999 999999987 48899999996
No 44
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.30 E-value=11 Score=34.25 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=50.5
Q ss_pred hHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 327 RADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARA 406 (505)
Q Consensus 327 ~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~ 406 (505)
++..+=..+.+++..|+.+...+.+-..+++.+...++.++.++.........++.+.......+..++..+.....+..
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566777788888888877777777777777777777666665555555555555555554444444333333
Q ss_pred HHH
Q 010658 407 EIV 409 (505)
Q Consensus 407 ~~~ 409 (505)
.++
T Consensus 119 klk 121 (151)
T PF11559_consen 119 KLK 121 (151)
T ss_pred HHH
Confidence 333
No 45
>PRK02224 chromosome segregation protein; Provisional
Probab=91.10 E-value=28 Score=40.91 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 392 GHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 392 ~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
.++..++..+...+..+..+++.++..+..+...+..+
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~ 686 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAV 686 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666667777777766544
No 46
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.57 E-value=21 Score=45.25 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 328 ADQLESLTKEDVASRMEIQRDLDS--------------LKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGH 393 (505)
Q Consensus 328 ~~~~e~~~~~e~~~R~e~ee~l~~--------------eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e 393 (505)
..++|..+.+|=+.|.++|....+ .+.+.+++.+++.....+|..+..+...+...+......+.+
T Consensus 1022 l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~e 1101 (1930)
T KOG0161|consen 1022 LDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKE 1101 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345555556666666665521111 123333344455555555555666666666666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHh
Q 010658 394 AEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKE 431 (505)
Q Consensus 394 ~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~ 431 (505)
+++++......+..-...+.+++++|..+..+++.+..
T Consensus 1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666677777777777777777776643
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.46 E-value=9.5 Score=37.60 Aligned_cols=81 Identities=14% Similarity=0.248 Sum_probs=56.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 338 DVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 338 e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~ 417 (505)
|+..-+..+..|..-+++++.|..|.....++|+.+......|+.-|+.+..........+.....+...++.+.+++++
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444566666677777777777788888888888888888888887777777777776666666666666666644
Q ss_pred h
Q 010658 418 Q 418 (505)
Q Consensus 418 ~ 418 (505)
.
T Consensus 103 e 103 (230)
T PF10146_consen 103 E 103 (230)
T ss_pred H
Confidence 4
No 48
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=90.42 E-value=2.4 Score=42.25 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEecCChHhHHHHHHHHHHhhhcC--CCeEEEEEEe
Q 010658 1 MDTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQ--SISIVILHVT 43 (505)
Q Consensus 1 M~~~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~--g~~IvllHV~ 43 (505)
|..++.+|+||+.|... |...|.|+....... +-.|+++||.
T Consensus 25 li~~~~kilVa~SGG~D-S~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 25 MIEEGDRVMVCLSGGKD-SYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCCCCCEEEEEecCCHH-HHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 45567899999999997 886665554433222 3468888883
No 49
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=90.34 E-value=0.15 Score=52.46 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=30.9
Q ss_pred HHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 458 LATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 458 ~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
...+.|-.-|.|++|. ||.||+|.- .+..||.|+++-
T Consensus 73 rsv~efe~lnrI~EGt-yGiVYRakdk~t~eIVALKr~km 111 (419)
T KOG0663|consen 73 RSVEEFEKLNRIEEGT-YGVVYRAKDKKTDEIVALKRLKM 111 (419)
T ss_pred ccHHHHHHHhhcccCc-ceeEEEeccCCcceeEEeeeccc
Confidence 3455677788999999 999999987 478999999973
No 50
>PTZ00284 protein kinase; Provisional
Probab=90.33 E-value=0.17 Score=54.67 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 454 EDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 454 ~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.++...+++|....+||.|+ ||.||+|.. .+..||||++.
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~-fg~V~~a~~~~~~~~vAvK~i~ 163 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGT-FGKVVEAWDRKRKEYCAVKIVR 163 (467)
T ss_pred CccccCCCcEEEEEEEEecc-CEEEEEEEEcCCCeEEEEEEEe
Confidence 34455678898889999999 999999987 47899999985
No 51
>PRK11637 AmiB activator; Provisional
Probab=90.15 E-value=5.3 Score=42.88 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 358 EVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKA 401 (505)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~ 401 (505)
.+..++..+..++.....++..++.++......+.+++.++...
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444433
No 52
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=89.93 E-value=0.27 Score=51.68 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=25.2
Q ss_pred cccccCCCcceEEEEEECCcE-EEEEEccC
Q 010658 467 FRLKCAGDWTNVYRGRLNHAS-VAIKTLNN 495 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L~g~~-VAVK~L~~ 495 (505)
..||.|+ ||.||+|..+|+. ||||++..
T Consensus 47 ~~iG~G~-~g~V~~~~~~g~~~vavK~~~~ 75 (362)
T KOG0192|consen 47 EVLGSGS-FGTVYKGKWRGTDVVAVKIISD 75 (362)
T ss_pred hhcccCC-ceeEEEEEeCCceeEEEEEecc
Confidence 3599999 9999999999988 99999974
No 53
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=89.86 E-value=0.35 Score=49.80 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=39.0
Q ss_pred cccccHHHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 448 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 448 ~~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
++.....++..++++|.....||.|+ ||.||+|.. .|..||||++.
T Consensus 4 ~~~~~~~~~~~~~~~y~~~~~lg~G~-~g~v~~~~~~~~~~~vaiK~~~ 51 (345)
T cd07877 4 YRQELNKTIWEVPERYQNLSPVGSGA-YGSVCAAFDTKTGLRVAVKKLS 51 (345)
T ss_pred chhhHHHHHhhccCceEEEEEeeecC-CeEEEEEEEcCCCeEEEEEEec
Confidence 44556667778899999999999999 999999986 47899999986
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.79 E-value=27 Score=36.09 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 362 DVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~ 417 (505)
+++.++++|..+..+....-+++.+....+.+++..++.......++..++.++++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444445555555444455555555555544
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.74 E-value=5.2 Score=39.58 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 377 QSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIE 413 (505)
Q Consensus 377 ~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~ 413 (505)
...|...++.+......++.+|.........+..++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444444433
No 56
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=89.36 E-value=2.1 Score=39.64 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=26.6
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcC--CCeEEEEEEee
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQ--SISIVILHVTY 44 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~--g~~IvllHV~~ 44 (505)
+|+|++.|-.. |-.++.++....... +..|+++||..
T Consensus 1 ~v~v~~SGG~D-S~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKD-SLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHH-HHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999997 886666655544322 55788999853
No 57
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=89.29 E-value=3 Score=41.44 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
..++|+||+.|-.. |--++.++.+. |..|+.||+.
T Consensus 11 ~~~~vlVa~SGGvD-Ss~ll~la~~~----g~~v~av~~~ 45 (252)
T TIGR00268 11 EFKKVLIAYSGGVD-SSLLAAVCSDA----GTEVLAITVV 45 (252)
T ss_pred hcCCEEEEecCcHH-HHHHHHHHHHh----CCCEEEEEec
Confidence 35789999999997 88777777553 5678999984
No 58
>PHA02988 hypothetical protein; Provisional
Probab=89.01 E-value=0.47 Score=47.37 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=34.0
Q ss_pred ccccccHHHHHHHhhccccccccccCCCcceEEEEEECCcEEEEEEccC
Q 010658 447 AFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 495 (505)
Q Consensus 447 ~~~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L~g~~VAVK~L~~ 495 (505)
..+.++..+| .+.....||+|+ +|.||+|.++|..||||++..
T Consensus 11 ~~~~i~~~~i-----~~~~~~~i~~g~-~~~v~~~~~~~~~vavK~~~~ 53 (283)
T PHA02988 11 DIKCIESDDI-----DKYTSVLIKEND-QNSIYKGIFNNKEVIIRTFKK 53 (283)
T ss_pred cceecCHHHc-----CCCCCeEEeeCC-ceEEEEEEECCEEEEEEeccc
Confidence 3455666666 344456899999 999999999999999999974
No 59
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=88.98 E-value=1.6 Score=44.07 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.5
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
+.+|+|||-|-.. |..+| +.+..+... -.+.++||.+.
T Consensus 21 ~~~ilVavSGGkD-S~~ll-~~L~~l~~~-~~~~a~~Vd~~ 58 (298)
T COG0037 21 EYKILVAVSGGKD-SLALL-HLLKELGRR-IEVEAVHVDHG 58 (298)
T ss_pred CCeEEEEeCCChH-HHHHH-HHHHHhccC-ceEEEEEecCC
Confidence 4799999999997 88544 555555433 68899999543
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.91 E-value=8.3 Score=37.35 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 377 QSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 377 ~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
..++..++..++..+.+|+.+......+++.++.+.+.|+.+-+
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666655555555555555555544433
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.89 E-value=16 Score=37.65 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=6.0
Q ss_pred cccHHHHHHHh
Q 010658 450 EYAAEDIRLAT 460 (505)
Q Consensus 450 ~~s~~el~~AT 460 (505)
.+++.||..|-
T Consensus 165 ~V~W~EINAA~ 175 (314)
T PF04111_consen 165 PVEWNEINAAW 175 (314)
T ss_dssp ---HHHHHHHH
T ss_pred CCChHHHHHHH
Confidence 36778887665
No 62
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=88.60 E-value=0.27 Score=48.56 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=37.4
Q ss_pred ccHHHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 451 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 451 ~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
+.+..+..++++|.-...||.|+ ||.||++.. .|..+|||.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~-~~~vy~~~~~~~~~~~~ik~~~~ 53 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGT-YGKVFKVLNKKNGSKAAVKILDP 53 (286)
T ss_pred EEeecCCCcccceeeeeeeccCC-CcEEEEEEECCCCceeEEEeecc
Confidence 55667777889999889999999 999999988 478999998864
No 63
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.56 E-value=27 Score=39.10 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=28.7
Q ss_pred hhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 326 SRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIEL 376 (505)
Q Consensus 326 ~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~ 376 (505)
.+...+-....+|+.-|+.++....+-...+..++.+.+.+..++..+...
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555556666766676666555555555555555555555555544444
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.45 E-value=36 Score=39.11 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=31.6
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 328 ADQLESLTKEDVASRMEIQRDLDSL---------------KEQSCEVIRDVEESKNRLSSLIELQSELSNKLQL 386 (505)
Q Consensus 328 ~~~~e~~~~~e~~~R~e~ee~l~~e---------------ke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 386 (505)
-..+|....+|=+.|++.|+..++. |++..+|..|+..+..+|..-.+++..|+.++++
T Consensus 504 R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 504 RASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345565666655666655554432 3344445555555555555555566666555543
No 65
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=88.35 E-value=0.29 Score=48.60 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=38.9
Q ss_pred cccHHHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 450 EYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 450 ~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
.+++.++..++++|.-...||.|+ ||.||++.. +|..+|+|.+..
T Consensus 11 ~~~~~~~~~~~~~y~~~~~l~~g~-~~~vy~~~~~~~~~~~aik~~~~ 57 (291)
T cd06639 11 MLGLESLGDPTDTWEIIETIGKGT-YGKVYKVTNKKDGSLAAVKILDP 57 (291)
T ss_pred hhhcccCCCCCCCeEEEEEeecCC-CeEEEEEEECCCCCEEEEEEecc
Confidence 466677888899999999999999 999999988 478999999863
No 66
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.16 E-value=71 Score=39.68 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 378 SELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 378 ~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
.+|..+++.........+.++..+.....+..++++++....+
T Consensus 336 ~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~ 378 (1353)
T TIGR02680 336 ERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLD 378 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433333
No 67
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=13 Score=41.28 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 380 LSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 380 l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
....++..+..+..|+.+|........++..++.++++.+.
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777788888888777777777777777776653
No 68
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=87.36 E-value=0.35 Score=52.20 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.7
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
+.|..-.+||+|. ||.|||+.- .|..||+|++.
T Consensus 117 ~~feki~kIGeGT-yg~VYkAr~~~tgkivALKKvr 151 (560)
T KOG0600|consen 117 DSFEKIEKIGEGT-YGQVYKARDLETGKIVALKKVR 151 (560)
T ss_pred HHHHHHHHhcCcc-hhheeEeeecccCcEEEEEEee
Confidence 4455566999999 999999975 68999999996
No 69
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.26 E-value=32 Score=33.88 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=46.1
Q ss_pred HHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 010658 321 ICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSEL-------SNKLQLSTMAKGH 393 (505)
Q Consensus 321 ~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l-------~~~~~~~~~~~~e 393 (505)
+-.+...+++++..|.+-.++-..++..|.+..+..+.+-..+.++...|..+...+..| ..+...+...+..
T Consensus 101 l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 101 LKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 333444555555544322222223455555554444444444444444444443333332 3333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhH
Q 010658 394 AEAQLEKAVIARAEIVKDIEELRRQRDVLHRRI 426 (505)
Q Consensus 394 ~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 426 (505)
|..+|..+........+....|.+.-+.+-..+
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444444444445544444333333
No 70
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.54 E-value=25 Score=31.98 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRLS---SLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVL 422 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l~---~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~ 422 (505)
|..|.+..+++..++..+++..+... .+..+...|+.++..+...+.+...+|..+-.-...+.+....|..+++..
T Consensus 48 E~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~ 127 (143)
T PF12718_consen 48 EEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQW 127 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 44444444445444444444433222 244444455555555555555555555544444455555555555555544
Q ss_pred HHhHHHH
Q 010658 423 HRRIEFC 429 (505)
Q Consensus 423 ~~~~e~~ 429 (505)
-...+.+
T Consensus 128 E~k~eel 134 (143)
T PF12718_consen 128 EEKYEEL 134 (143)
T ss_pred HHHHHHH
Confidence 4444444
No 71
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.46 E-value=89 Score=38.20 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=7.7
Q ss_pred HHHHHHcCCCEEEEcc
Q 010658 113 LDLVSRLTITKLVMGL 128 (505)
Q Consensus 113 ve~a~~~~idlLVmGs 128 (505)
++.|--...+.||+=+
T Consensus 535 ie~alG~~l~~vVV~~ 550 (1163)
T COG1196 535 LEAALGNRLQAVVVEN 550 (1163)
T ss_pred HHHHcccccCCeeeCC
Confidence 4444444555555544
No 72
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.92 E-value=27 Score=31.75 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 010658 364 EESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRR 425 (505)
Q Consensus 364 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~ 425 (505)
+-.-..|..++..+..+..+...+...+..++.++......+..+..+++-++..+++..+.
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444444333
No 73
>PTZ00036 glycogen synthase kinase; Provisional
Probab=85.72 E-value=0.71 Score=49.59 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=28.8
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
+.+|.-..+||.|+ ||.||+|.. .|..||||++.
T Consensus 65 ~~~y~~~~~LG~G~-fg~Vy~~~~~~~~~~vAiK~i~ 100 (440)
T PTZ00036 65 NKSYKLGNIIGNGS-FGVVYEAICIDTSEKVAIKKVL 100 (440)
T ss_pred CCeEEEeEEEEeCC-CEEEEEEEECCCCCEEEEEEEe
Confidence 34577778999999 999999987 47899999885
No 74
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.69 E-value=62 Score=38.80 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Q 010658 356 SCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 356 ~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~ 430 (505)
++...+.+++++..|......+.+.-..+....-.+..+..++..+...+..+..+...+..+-..+..++++.+
T Consensus 516 ~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 516 HETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333333333444444444444444444444444444444445555554
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.25 E-value=59 Score=38.99 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 353 KEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 353 ke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
|.+..++-.+--...+.|..+..+...|+.++.+....+.+++...+.+-+.++.+..++++|.....
T Consensus 390 k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 390 KKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555556666666666666666666666666666666666666665555443
No 76
>PRK09188 serine/threonine protein kinase; Provisional
Probab=85.18 E-value=0.82 Score=48.18 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=29.6
Q ss_pred HHhhccccccccccCCCcceEEEEEE---CCcEEEEEEcc
Q 010658 458 LATEDFSERFRLKCAGDWTNVYRGRL---NHASVAIKTLN 494 (505)
Q Consensus 458 ~AT~~Fs~~~~iG~gg~~G~VYkg~L---~g~~VAVK~L~ 494 (505)
...++|.-...||.|+ ||.||+|.. .|..||||++.
T Consensus 15 ~~~~~Y~~~~~IG~G~-fg~Vy~a~~~~~~~~~vAiK~~~ 53 (365)
T PRK09188 15 ALSARFVETAVLKRDV-FSTVERGYFAGDPGTARAVRRRV 53 (365)
T ss_pred cccCCceEccEEeecC-cEEEEEEEEcCCCCeEEEEEEec
Confidence 3456677888999999 999999986 46788999875
No 77
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.15 E-value=91 Score=37.16 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRL-SSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKD 411 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~ 411 (505)
+-...+-|.+...+++++..+.+.+ ..+..++.+.++++.-...++..++.++.+-......+..+
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666 55666666666666666666666655555444444433333
No 78
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.81 E-value=52 Score=36.39 Aligned_cols=56 Identities=20% Similarity=0.100 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHhHhHHHHhHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIAR-AEIVK-----DIEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~-~~~~~-----~~~~l~~~r~~~~~~~e~~~ 430 (505)
.+..+|+.+.++....+.+...+|+....+. .+.+. -.++++++....+++++.-.
T Consensus 115 ~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T TIGR03319 115 NKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEA 176 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555443332 11111 12334444445555554443
No 79
>PRK12704 phosphodiesterase; Provisional
Probab=84.45 E-value=55 Score=36.25 Aligned_cols=57 Identities=26% Similarity=0.144 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHhHhHHHHhHHHHHh
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIAR-AEIV-----KDIEELRRQRDVLHRRIEFCKE 431 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~-~~~~-----~~~~~l~~~r~~~~~~~e~~~~ 431 (505)
.+..+|+.+..+......+...+|+....+. .+.+ +-.++++++....+++++.-..
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555444332 1211 1123455555555666655543
No 80
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=84.38 E-value=1.1 Score=52.74 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=32.7
Q ss_pred ccHHHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 451 YAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 451 ~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
+++.++. ..|...+.||.|+ ||.||+|.. +|..||||++..
T Consensus 683 ~~~~~~~---~~~~~~~~ig~G~-~g~Vy~~~~~~~~~~vavK~~~~ 725 (968)
T PLN00113 683 ITINDIL---SSLKEENVISRGK-KGASYKGKSIKNGMQFVVKEIND 725 (968)
T ss_pred hhHHHHH---hhCCcccEEccCC-CeeEEEEEECCCCcEEEEEEccC
Confidence 4444443 4577888999999 999999997 588999999863
No 81
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.94 E-value=47 Score=32.89 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA 404 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~ 404 (505)
+.++...+..-+.+++.+....+.....+.........|+.++........++.--+...+..
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555666666555555544444444433333
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.85 E-value=53 Score=33.38 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLS-----------TMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-----------~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
..+...++++-.++..+..+..+|..+..++..|+.++.+. ...+..++.++......++....++..|
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554433 4445555555555555555555555555
Q ss_pred HHhHhHHHHhHH
Q 010658 416 RRQRDVLHRRIE 427 (505)
Q Consensus 416 ~~~r~~~~~~~e 427 (505)
...+-.+-.+|.
T Consensus 289 l~~K~~Ld~EIa 300 (312)
T PF00038_consen 289 LDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 555544444443
No 83
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.71 E-value=28 Score=30.07 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
|.+++..|+.--..+|..+...++....=..+...+..|..|.......+.++++++..+...+...+....+|+..+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888887777766666666677777777777788888888888877777776666665555544
No 84
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=83.52 E-value=1 Score=51.46 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=26.4
Q ss_pred ccccccccCCCcceEEEEEE--CC----cEEEEEEccCCC
Q 010658 464 SERFRLKCAGDWTNVYRGRL--NH----ASVAIKTLNNGL 497 (505)
Q Consensus 464 s~~~~iG~gg~~G~VYkg~L--~g----~~VAVK~L~~~~ 497 (505)
....+||.|. ||+||||.. .| .+||||++....
T Consensus 699 kk~kvLGsgA-fGtV~kGiw~Pege~vKipVaiKvl~~~t 737 (1177)
T KOG1025|consen 699 KKDKVLGSGA-FGTVYKGIWIPEGENVKIPVAIKVLIEFT 737 (1177)
T ss_pred hhhceecccc-ceeEEeeeEecCCceecceeEEEEeeccC
Confidence 3456899999 999999987 34 589999997543
No 85
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.07 E-value=45 Score=33.61 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 318 KWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLK--EQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAE 395 (505)
Q Consensus 318 e~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~ek--e~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e 395 (505)
+.++-.+..-++++|++..+=-++|.-+++.+.+.+ ..++....+.+....+|.........+...+......+.++.
T Consensus 148 ~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~ 227 (269)
T PF05278_consen 148 ESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIK 227 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667889999998888889988877554321 223344445454444444443333333333333333344444
Q ss_pred HHHH
Q 010658 396 AQLE 399 (505)
Q Consensus 396 ~~l~ 399 (505)
.++.
T Consensus 228 ~~i~ 231 (269)
T PF05278_consen 228 ERIT 231 (269)
T ss_pred HHHH
Confidence 4333
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.76 E-value=37 Score=30.85 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQ---LSTMAKGHAEAQLEKAVIARAEIVKDIEE 414 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~---~~~~~~~e~e~~l~~~~~~~~~~~~~~~~ 414 (505)
|..+..-..++..+-.++|.+...|..+.....+.+.... ..++.+.-||.+|..+-..+.+....+.+
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555555544444443322 24445555555555544444444444433
No 87
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=82.47 E-value=0.94 Score=49.56 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=32.7
Q ss_pred HHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 455 DIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 455 el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
++....++|.-...||.|+ ||.||+|.. +|..||||.+..
T Consensus 26 ~~~~~~~rY~i~~~LG~G~-fG~Vy~a~~~~~g~~vAvK~i~~ 67 (496)
T PTZ00283 26 TAKEQAKKYWISRVLGSGA-TGTVLCAKRVSDGEPFAVKVVDM 67 (496)
T ss_pred cccccCCCEEEEEEEecCC-CEEEEEEEEcCCCCEEEEEEEec
Confidence 3344557788888999999 999999986 589999999863
No 88
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=82.47 E-value=1.2 Score=45.84 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.6
Q ss_pred ccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 466 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
...||.|+ ||.||+|.. +|..||||.+.
T Consensus 79 ~~~lg~G~-~g~V~~~~~~~~~~~vaiK~~~ 108 (353)
T PLN00034 79 VNRIGSGA-GGTVYKVIHRPTGRLYALKVIY 108 (353)
T ss_pred hhhccCCC-CeEEEEEEECCCCCEEEEEEEe
Confidence 45899999 999999987 47899999985
No 89
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.46 E-value=0.98 Score=48.19 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=27.5
Q ss_pred ccccccccCCCcceEEEEEECCcEEEEEEccC
Q 010658 464 SERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 495 (505)
Q Consensus 464 s~~~~iG~gg~~G~VYkg~L~g~~VAVK~L~~ 495 (505)
.-...||.|. ||.|++|..+|..||||.+.+
T Consensus 214 ~L~e~IGkGR-yGEVwrG~wrGe~VAVKiF~s 244 (513)
T KOG2052|consen 214 VLQEIIGKGR-FGEVWRGRWRGEDVAVKIFSS 244 (513)
T ss_pred EEEEEecCcc-ccceeeccccCCceEEEEecc
Confidence 3345899999 999999999999999999974
No 90
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=82.28 E-value=84 Score=34.53 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=6.2
Q ss_pred cCCCEEEEccC
Q 010658 119 LTITKLVMGLS 129 (505)
Q Consensus 119 ~~idlLVmGs~ 129 (505)
.++|.|++|..
T Consensus 65 ~~ADi~~ig~~ 75 (489)
T PF05262_consen 65 LDADIFIIGEN 75 (489)
T ss_pred CCCcEEEEcCC
Confidence 45666666653
No 91
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=82.01 E-value=0.88 Score=47.49 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=29.8
Q ss_pred HhhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.+++|.-...||.|+ ||.||++.. .|..||||.+.
T Consensus 41 ~~~~y~~~~~lg~G~-~g~Vy~~~~~~~~~~~aiK~~~ 77 (370)
T cd05596 41 KAEDFDVIKVIGRGA-FGEVQLVRHKSSKQVYAMKLLS 77 (370)
T ss_pred CHHHcEEEEEEeeCC-CEEEEEEEECCCCCEEEEEEEE
Confidence 356777788999999 999999987 47899999985
No 92
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=81.94 E-value=0.41 Score=42.09 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=27.6
Q ss_pred hccccccccccCCCcceEEEEEE-CCcEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L-~g~~VAVK~L~~ 495 (505)
..|+ ...||.|. .|.||+|.| +|+.||||..++
T Consensus 12 ~~fd-~~PlasAS-iaQVh~a~l~~g~~VaVKV~rP 45 (119)
T PF03109_consen 12 DEFD-PEPLASAS-IAQVHRARLKDGEEVAVKVQRP 45 (119)
T ss_pred HHCC-cchhhhee-hhhheeeeecccchhhhhhcch
Confidence 3455 45789998 999999999 699999999875
No 93
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=81.78 E-value=30 Score=39.49 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH---HHHHHHhhhhHHHHhhhhHHHHHhHHHHH--HHHHHHHHH
Q 010658 286 TEFMKSKINEAREMIRLKKKETKDDAERCAKA---KWAICLCNSRADQLESLTKEDVASRMEIQ--RDLDSLKEQ 355 (505)
Q Consensus 286 ~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~ka---e~~~~~~~~~~~~~e~~~~~e~~~R~e~e--e~l~~eke~ 355 (505)
.++|++ .+|.. +.+.+|+|+++...|...+ .+...+..+|+++.+..-++|-.+|-.+| +.|+++.++
T Consensus 923 ~er~rk-~qE~~-E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 923 LERLRK-IQELA-EAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEE 995 (1259)
T ss_pred HHHHHH-HHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444444 35554 4456677776654322111 12234445566665555555544444443 445555443
No 94
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=81.76 E-value=0.65 Score=54.96 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=31.9
Q ss_pred HHhhccccccccccCCCcceEEEEE--ECCcEEEEEEccC
Q 010658 458 LATEDFSERFRLKCAGDWTNVYRGR--LNHASVAIKTLNN 495 (505)
Q Consensus 458 ~AT~~Fs~~~~iG~gg~~G~VYkg~--L~g~~VAVK~L~~ 495 (505)
...++|-+-.++|.|| ||.|||.. |||+..|||++.-
T Consensus 476 RY~~DFEEL~lLGkGG-FG~VvkVRNKlDGr~YAIKKIpl 514 (1351)
T KOG1035|consen 476 RYLNDFEELELLGKGG-FGSVVKVRNKLDGREYAIKKIPL 514 (1351)
T ss_pred hHhhhhHHHHHhcCCC-CceEEEEeecccchhhhhhhccC
Confidence 4556788888999999 99999986 5999999999973
No 95
>PRK12704 phosphodiesterase; Provisional
Probab=81.75 E-value=91 Score=34.58 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=3.2
Q ss_pred cccccCC
Q 010658 467 FRLKCAG 473 (505)
Q Consensus 467 ~~iG~gg 473 (505)
.+||..|
T Consensus 224 riigreG 230 (520)
T PRK12704 224 RIIGREG 230 (520)
T ss_pred ceeCCCc
Confidence 3555433
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.73 E-value=68 Score=33.15 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 353 KEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA 404 (505)
Q Consensus 353 ke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~ 404 (505)
+++++.++.++......+......+.+|..++......+.++..++.....+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333
No 97
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=81.71 E-value=1.4 Score=45.00 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=28.2
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
++|.-...||.|+ ||.||+|.. .|..||||.+.
T Consensus 18 ~~y~~~~~lg~G~-~g~V~~~~~~~~~~~~aiK~~~ 52 (329)
T PTZ00263 18 SDFEMGETLGTGS-FGRVRIAKHKGTGEYYAIKCLK 52 (329)
T ss_pred hheEEEEEEEecC-CeEEEEEEECCCCCEEEEEEEE
Confidence 4566677999999 999999998 47899999985
No 98
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=81.65 E-value=1.5 Score=47.29 Aligned_cols=33 Identities=36% Similarity=0.509 Sum_probs=27.8
Q ss_pred ccccccccccCCCcceEEEEEE-CCcEEEEEEccCC
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG 496 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L-~g~~VAVK~L~~~ 496 (505)
.|+ ...||.|+ +|.||+|.+ +|..||||+.+++
T Consensus 119 ~fd-~~plasaS-igQVh~A~l~~G~~VaVKv~rp~ 152 (437)
T TIGR01982 119 EFE-EKPLAAAS-IAQVHRARLVDGKEVAVKVLRPG 152 (437)
T ss_pred hCC-Ccceeeee-hhheEEEEecCCCEEEEEeeCCC
Confidence 344 35799999 999999999 7999999998753
No 99
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.52 E-value=80 Score=38.06 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 339 VASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTM 389 (505)
Q Consensus 339 ~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 389 (505)
.++|.++-+..+.-++++..+....+..+.+++.+.+...+....+..++.
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666655555555555554
No 100
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=81.50 E-value=0.87 Score=51.71 Aligned_cols=55 Identities=31% Similarity=0.427 Sum_probs=40.2
Q ss_pred ccccHHHHHHHhhcccc---------ccccccCCCcceEEEEEE--CC---cEEEEEEccCCC---Chhhhhc
Q 010658 449 REYAAEDIRLATEDFSE---------RFRLKCAGDWTNVYRGRL--NH---ASVAIKTLNNGL---SEEDFQA 504 (505)
Q Consensus 449 ~~~s~~el~~AT~~Fs~---------~~~iG~gg~~G~VYkg~L--~g---~~VAVK~L~~~~---~~~eF~~ 504 (505)
..++|++=..|...|.. +.+||.|- ||-||+|.| +| .+||||-|..+. ...+|..
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGE-FGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~ 679 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGE-FGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLS 679 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEeccc-ccceecccccCCCCcceeEEEeeeccCccHHHHhhhhh
Confidence 34677777667666643 47899998 999999999 45 589999998533 3446654
No 101
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=81.32 E-value=1.6 Score=46.65 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHhHHHHHhhccccccccccccccccccccHHHHHHHhhccccccccccCCCcceEEEEEE
Q 010658 404 ARAEIVKDIEELRRQRDVLHRRIEFCKEKDAIGMVIRSSELSCAFREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL 483 (505)
Q Consensus 404 ~~~~~~~~~~~l~~~r~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L 483 (505)
+-+++..+++.|++.|...+++...... +..+. |.+.+ ++. ..+---+++|.|| |.-|||+.-
T Consensus 422 EEaeiqaElERLErvrnlHiRELKRi~N---EdnSQ-FkDHp------tLn------~RYLlLhLLGrGG-FSEVyKAFD 484 (775)
T KOG1151|consen 422 EEAEIQAELERLERVRNLHIRELKRIHN---EDNSQ-FKDHP------TLN------DRYLLLHLLGRGG-FSEVYKAFD 484 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhh-hccCc------chH------HHHHHHHHhcccc-HHHHHHhcc
Confidence 3467778888999999877776543321 11111 11101 111 1122245889999 999999974
Q ss_pred --CCcEEEEEEcc
Q 010658 484 --NHASVAIKTLN 494 (505)
Q Consensus 484 --~g~~VAVK~L~ 494 (505)
..+.||||.-+
T Consensus 485 l~EqRYvAvKIHq 497 (775)
T KOG1151|consen 485 LTEQRYVAVKIHQ 497 (775)
T ss_pred cchhheeeEeeeh
Confidence 57899999764
No 102
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.30 E-value=95 Score=34.51 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQL---STM-AKGHAEAQLEKAVIARAEIVKDIEELRRQRDVL 422 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~-~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~ 422 (505)
......|.+++++..++..+.+-|+........|..++.. .++ .+.|..++|..-...+.-+..+.++|..++.-+
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL 443 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQEL 443 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777777776655555555444321 111 222333333322222223333444455555555
Q ss_pred HHhHHHHHh
Q 010658 423 HRRIEFCKE 431 (505)
Q Consensus 423 ~~~~e~~~~ 431 (505)
.+.++.+..
T Consensus 444 ~~yi~~Le~ 452 (546)
T PF07888_consen 444 LEYIERLEQ 452 (546)
T ss_pred HHHHHHHHH
Confidence 555555533
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.29 E-value=65 Score=35.73 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEE 365 (505)
Q Consensus 286 ~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~ 365 (505)
..+|+.+++++...++ +........+.+.. ....+...+|.-+.-=-.+.+-+|+.+..-|.+..++..++..
T Consensus 115 i~kl~~e~~elr~~~~---~~~k~~~~~re~~~----~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 115 ITKLREELKELRKKLE---KAEKERRGAREKLD----DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHhHHHHHHHHHHHH---HHHHHHhhhHHHHH----HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6667777776666552 22222222222221 1222444444433333334556688888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 366 SKNRLSSLIELQSELSNKLQLSTMAKG 392 (505)
Q Consensus 366 ~~~~l~~~~~~~~~l~~~~~~~~~~~~ 392 (505)
++..|....-.+..++++++..-..+.
T Consensus 188 ~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 188 ARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888777665555555555555444443
No 104
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=81.14 E-value=1.5 Score=43.45 Aligned_cols=34 Identities=32% Similarity=0.298 Sum_probs=29.7
Q ss_pred hhccccccccccCCCcceEEEEEEC--CcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRLN--HASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L~--g~~VAVK~L~ 494 (505)
.++|.-...+|.|. ||.||-|.-+ +-.||+|++.
T Consensus 21 l~dfeigr~Lgkgk-FG~vYlarekks~~IvalKVlf 56 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGK-FGNVYLAREKKSLFIVALKVLF 56 (281)
T ss_pred hhhccccccccCCc-cccEeEeeeccCCcEEEEeeee
Confidence 45688888999999 9999999983 6799999996
No 105
>PRK00106 hypothetical protein; Provisional
Probab=81.09 E-value=97 Score=34.48 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 378 SELSNKLQLSTMAKGHAEAQLEKA 401 (505)
Q Consensus 378 ~~l~~~~~~~~~~~~e~e~~l~~~ 401 (505)
.+|+.+.++....+.+...+|+..
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 106
>PRK13820 argininosuccinate synthase; Provisional
Probab=80.82 E-value=12 Score=39.87 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCC-CeEEEEEEe
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQS-ISIVILHVT 43 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g-~~IvllHV~ 43 (505)
.++|+||+.|-.. |.-++.|+.+.+ | +.|+.+|+.
T Consensus 2 ~~kVvvA~SGGvD-Ssvll~lL~e~~---g~~~Viav~vd 37 (394)
T PRK13820 2 MKKVVLAYSGGLD-TSVCVPLLKEKY---GYDEVITVTVD 37 (394)
T ss_pred CCeEEEEEeCcHH-HHHHHHHHHHhc---CCCEEEEEEEE
Confidence 3789999999997 888899975532 4 379999994
No 107
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=80.51 E-value=1.3 Score=46.18 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 454 EDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 454 ~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.++....++|.-...||.|+ ||.||++.. .+..+|+|.+.
T Consensus 36 ~~~~~~~~~y~i~~~lG~G~-fg~Vy~~~~~~~~~~~aiK~i~ 77 (371)
T cd05622 36 RDLRMKAEDYEVVKVIGRGA-FGEVQLVRHKSTRKVYAMKLLS 77 (371)
T ss_pred hhcCcchhhcEEEEEEeecC-CeEEEEEEECCCCcEEEEEEEE
Confidence 34444567788888999999 999999988 47899999985
No 108
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=79.86 E-value=11 Score=35.77 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=24.1
Q ss_pred EEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 8 VYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 8 IlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
|+||+.|-.. |-.++.|+.+.. +..+++|||.
T Consensus 1 vvva~SGG~D-S~~ll~ll~~~~---~~~v~~v~vd 32 (202)
T cd01990 1 VAVAFSGGVD-STLLLKAAVDAL---GDRVLAVTAT 32 (202)
T ss_pred CEEEccCCHH-HHHHHHHHHHHh---CCcEEEEEeC
Confidence 6899999987 887887776643 2268888984
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.86 E-value=1.4e+02 Score=37.06 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 380 LSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 380 l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
++..+......+.+++.++......+..+.+++..+...+++...++..+
T Consensus 975 ~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444444333
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.46 E-value=29 Score=30.67 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 382 NKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 382 ~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
.++......+.+++.+...+...+.+...+.++|
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3344444455555556665555555555444444
No 111
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=79.41 E-value=1.5 Score=45.75 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.6
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
+++|.-...||.|+ ||.||++.. .+..+|+|.+.
T Consensus 42 ~~~y~~~~~lG~G~-fg~Vy~~~~~~~~~~~aiK~~~ 77 (370)
T cd05621 42 AEDYDVVKVIGRGA-FGEVQLVRHKSSQKVYAMKLLS 77 (370)
T ss_pred HHHCeEEEEEEecC-CeEEEEEEECCCCCEEEEEEEE
Confidence 45677777999999 999999987 47899999885
No 112
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.37 E-value=1.6e+02 Score=36.08 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEES 366 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~ 366 (505)
++.|.+...++..+..+++..
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344443333443333333333
No 113
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=79.32 E-value=51 Score=30.16 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=62.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 340 ~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
..|+++|....-.+.+++.++..+|.+..+|.-+-.-..-.+....++-.+.+|...+.+.-+..+-++..+-+.++-.+
T Consensus 70 ~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKK 149 (159)
T PF04949_consen 70 EIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKK 149 (159)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888778888888889999998888888777777777777778888888888888877777777777666665433
No 114
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=79.13 E-value=1.8 Score=45.23 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=27.1
Q ss_pred hccccccccccCCCcceEEEEEE-------CCcEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L-------~g~~VAVK~L~~ 495 (505)
++|.-...||.|+ ||.||+|.. .+..||||++..
T Consensus 35 ~~~~~~~~LG~G~-fG~V~~~~~~~~~~~~~~~~vavK~l~~ 75 (375)
T cd05104 35 NRLSFGKTLGAGA-FGKVVEATAYGLFKSDAAMTVAVKMLKP 75 (375)
T ss_pred HHeehhheecCCc-cceEEEEEEeccccCccceeEEEEeccC
Confidence 4566678999999 999999963 145899999963
No 115
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=79.08 E-value=2.4 Score=45.05 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=27.1
Q ss_pred hccccccccccCCCcceEEEEEECC-------cEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRLNH-------ASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L~g-------~~VAVK~L~~ 495 (505)
++|.-...||.|+ ||.||+|...+ ..||||++..
T Consensus 37 ~~~~~~~~lG~G~-fG~Vy~~~~~~~~~~~~~~~vavK~l~~ 77 (401)
T cd05107 37 DNLVLGRTLGSGA-FGRVVEATAHGLSHSQSTMKVAVKMLKS 77 (401)
T ss_pred HHeehhhhccCCC-ceeEEEEEEcCCCCCCCceEEEEEecCC
Confidence 3455567899999 99999998632 5799999974
No 116
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.97 E-value=29 Score=33.62 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010658 395 EAQLEKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 395 e~~l~~~~~~~~~~~~~~~~l~~ 417 (505)
..++..+......+..+.+.+++
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444433
No 117
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.95 E-value=1.1e+02 Score=34.08 Aligned_cols=131 Identities=22% Similarity=0.259 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHH-HHHHHHHHHHHHHH
Q 010658 282 VAERTEFMKSKINEAREMIRL-KKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEI-QRDLDSLKEQSCEV 359 (505)
Q Consensus 282 eae~~~~l~~~l~ea~~~~~~-~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~-ee~l~~eke~~e~~ 359 (505)
.+...+.|.....++.+||.. .+-.-..++.|..++ ++-.=..|.++..+ .++.++.. +..|..-++++++-
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~--~L~~D~nK~~~y~~----~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKA--RLQDDVNKFQAYVS----QMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH--HHHhHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Confidence 556677788888888888831 122223333333222 12223345655544 44444443 34444444444333
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010658 360 IRDVEESKNRLSSL---IELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQ 418 (505)
Q Consensus 360 ~~~~~~~~~~l~~~---~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~ 418 (505)
..|.+.+..+-..+ .+.+..--.+...++....++.+.+.....++..+.++.=++..+
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333222222111 111111122344556666666677766666666666555544443
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.47 E-value=87 Score=32.37 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.6
Q ss_pred cccHHHHH
Q 010658 450 EYAAEDIR 457 (505)
Q Consensus 450 ~~s~~el~ 457 (505)
.|+..++.
T Consensus 267 ~~t~~Ei~ 274 (312)
T smart00787 267 GFTFKEIE 274 (312)
T ss_pred CCCHHHHH
Confidence 34444443
No 119
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=78.42 E-value=2.4 Score=43.70 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=29.8
Q ss_pred HhhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
..+.|.-...||.|+ ||.||++.- .|..||||++.
T Consensus 19 ~~~~y~~~~~lg~G~-~g~V~~~~~~~~~~~vavK~~~ 55 (359)
T cd07876 19 VLKRYQQLKPIGSGA-QGIVCAAFDTVLGINVAVKKLS 55 (359)
T ss_pred hhhceEEEEEeecCC-CEEEEEEEEcCCCceeEEEEec
Confidence 346777788999999 999999986 47899999985
No 120
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.35 E-value=1.2e+02 Score=33.81 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.3
Q ss_pred EEEEEE
Q 010658 37 IVILHV 42 (505)
Q Consensus 37 IvllHV 42 (505)
|++..|
T Consensus 7 ViF~nV 12 (546)
T PF07888_consen 7 VIFNNV 12 (546)
T ss_pred EEEecc
Confidence 333333
No 121
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.18 E-value=0.34 Score=54.98 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=30.6
Q ss_pred ccccccCCCcceEEEEEECC-------cEEEEEEccCC---CChhhhhcC
Q 010658 466 RFRLKCAGDWTNVYRGRLNH-------ASVAIKTLNNG---LSEEDFQAK 505 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L~g-------~~VAVK~L~~~---~~~~eF~~~ 505 (505)
...||+|. ||.||+|...| +.||||.|+.. +...+|++|
T Consensus 491 ~~eLGega-FGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~RE 539 (774)
T KOG1026|consen 491 KEELGEGA-FGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRRE 539 (774)
T ss_pred hhhhcCch-hhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHH
Confidence 45799999 99999999843 57999999842 256788764
No 122
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.13 E-value=59 Score=30.23 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRLSS 372 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l~~ 372 (505)
|...|.++.+...++|.....-..
T Consensus 36 L~evk~~v~~~I~evD~Le~~er~ 59 (159)
T PF05384_consen 36 LEEVKEEVSEVIEEVDKLEKRERQ 59 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 123
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.03 E-value=90 Score=32.33 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEE 365 (505)
Q Consensus 286 ~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~ 365 (505)
..+|..+|.....+...++.-|+....|++..++-..+-...+-.....-..-.+.-..+-..|...|++-..+..+++.
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666655566666666555544432211110000000000000001122234444444444444444444
Q ss_pred HHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 366 SKNRLSSLIEL--------------------------QSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 366 ~~~~l~~~~~~--------------------------~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
+..+|..++.. ...|-.|+..+.....+++..+.....+..++..++|..+..=
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~ 170 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKA 170 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332 3344445555555555666666655555555555555554443
Q ss_pred hHHHHhH
Q 010658 420 DVLHRRI 426 (505)
Q Consensus 420 ~~~~~~~ 426 (505)
++++.+.
T Consensus 171 ~RLN~EL 177 (319)
T PF09789_consen 171 HRLNHEL 177 (319)
T ss_pred HHHHHHH
Confidence 3343333
No 124
>smart00090 RIO RIO-like kinase.
Probab=77.81 E-value=2 Score=42.36 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=26.4
Q ss_pred cccccccccCCCcceEEEEE--E-CCcEEEEEEccC
Q 010658 463 FSERFRLKCAGDWTNVYRGR--L-NHASVAIKTLNN 495 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~--L-~g~~VAVK~L~~ 495 (505)
|.-...||.|+ +|.||+|. . +|..||||.+..
T Consensus 30 ~~i~~~Lg~G~-~g~Vy~a~~~~~~g~~vaiK~~~~ 64 (237)
T smart00090 30 SAIGGCISTGK-EANVYHALDFDGSGKERAVKIYRT 64 (237)
T ss_pred HHhCCeeccCc-ceeEEEEEecCCCCcEEEEEEEEc
Confidence 33455899999 99999998 4 689999999863
No 125
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.73 E-value=1.2e+02 Score=33.39 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 319 WAICLCNSRADQLESLTKEDVASRMEIQ---RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLST 388 (505)
Q Consensus 319 ~~~~~~~~~~~~~e~~~~~e~~~R~e~e---e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 388 (505)
|...+...++|++-.....-...-||++ +.|.+..|+.-++..++-.+.+++....-++.++...++.+.
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444444444443 334444444444455555555555444444444444444433
No 126
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.70 E-value=83 Score=31.73 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 345 IQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNK-------LQLSTMAKGHAEAQLEKAVIARAEIVKDIEELR 416 (505)
Q Consensus 345 ~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~-------~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~ 416 (505)
+|.+|.+.|+.++..+.+.-.++.+.+.+++....|+.. ++.-+..+.-+|.+|..+..++..+.+++-.++
T Consensus 44 lEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 44 LEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999887777777777766666666555543 444555667777777777666655555554443
No 127
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=77.56 E-value=20 Score=37.69 Aligned_cols=38 Identities=5% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCCCCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 1 MDTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 1 M~~~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
|.....+|+||+.|... |--++.++.+ .|-.|+.+|+.
T Consensus 1 ~~~~~~kVlValSGGVD-Ssvaa~LL~~----~G~~V~~v~~~ 38 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTD-SSVAAMLLLE----AGYEVTGVTFR 38 (360)
T ss_pred CCCCCCEEEEEEcCCHH-HHHHHHHHHH----cCCeEEEEEEe
Confidence 67778999999999997 7766665543 46678999984
No 128
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.50 E-value=57 Score=38.76 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAR 297 (505)
Q Consensus 286 ~~~l~~~l~ea~ 297 (505)
.+||+..|.-|.
T Consensus 413 IerLK~dl~AaR 424 (1041)
T KOG0243|consen 413 IERLKRDLAAAR 424 (1041)
T ss_pred HHHHHHHHHHhH
Confidence 556666665544
No 129
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.34 E-value=52 Score=36.28 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 355 QSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 355 ~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
++.+++..+...+..+.+...+...|+.++........+++.+|......+.++..++.++.+.++
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444545555555566666666666666666666666666666666666655543
No 130
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.15 E-value=1.1e+02 Score=32.87 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIV 409 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~ 409 (505)
|++++..+...+++..++..-+.+-++.+..+........+++.+....-..|...+.++..+.+...
T Consensus 184 q~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555566666666666666666666666666555554333
No 131
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.87 E-value=1.8e+02 Score=35.20 Aligned_cols=54 Identities=19% Similarity=0.067 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 010658 312 ERCAKAKWAICLCNSRADQLESLTKEDVASRME-IQRDLDSLKEQSCEVIRDVEES 366 (505)
Q Consensus 312 ~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e-~ee~l~~eke~~e~~~~~~~~~ 366 (505)
....+|+.++..|.+.....+.+. ..+..+-+ .|+.+...-+++.++...++++
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l-~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLL-AKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555544444432 22211111 2444444444444444443333
No 132
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.53 E-value=1.7e+02 Score=34.78 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKD 411 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~ 411 (505)
..+.+-..+.+.+.-+.++....+++...+...++.++......+..++.++..+.........+
T Consensus 808 ~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 808 KELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 33444444555566666666666666666666666666666666666666666655554433333
No 133
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.49 E-value=1e+02 Score=36.63 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 010658 279 NMSVAERTEFMKSKINEAREMI 300 (505)
Q Consensus 279 ~~~eae~~~~l~~~l~ea~~~~ 300 (505)
...+|++..+|..+..+++.++
T Consensus 196 ~k~eaeky~~lkde~~~~q~e~ 217 (1141)
T KOG0018|consen 196 GKEEAEKYQRLKDEKGKAQKEQ 217 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888888877
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.39 E-value=1.5e+02 Score=34.18 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
|+.+.+...+-.++++++....+.+.++++.+........-.+..++ .++.++|......+..|...++++++..+
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE---r~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE---REFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455666666666666666655443322111122222 33334444444445555555555544443
No 135
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=76.37 E-value=23 Score=37.78 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.8
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
+|+||+.|-.. |.-++.|+.+. |..|+.+|+.
T Consensus 1 kVvla~SGGlD-Ssvll~~l~e~----g~~V~av~id 32 (394)
T TIGR00032 1 KVVLAYSGGLD-TSVCLKWLREK----GYEVIAYTAD 32 (394)
T ss_pred CEEEEEcCCHH-HHHHHHHHHHc----CCEEEEEEEe
Confidence 58999999997 88889898653 6789999994
No 136
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.33 E-value=1.7e+02 Score=34.74 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHH
Q 010658 291 SKINEAREMIRLKKKETKDDAERC 314 (505)
Q Consensus 291 ~~l~ea~~~~~~~r~~~~~~~~~~ 314 (505)
++-.++..+++.+-++++.+..+|
T Consensus 765 k~~~~~i~~lE~~~~d~~~~re~r 788 (1174)
T KOG0933|consen 765 KKCEDKISTLEKKMKDAKANRERR 788 (1174)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhH
Confidence 333444445555555555554444
No 137
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.30 E-value=2 Score=47.57 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=27.3
Q ss_pred ccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
-|++-+-||.|. ||.||-+.- +..+||||+++
T Consensus 27 lf~dLrEIGHGS-FGAVYfArd~~n~evVAIKKMs 60 (948)
T KOG0577|consen 27 LFSDLREIGHGS-FGAVYFARDVRNSEVVAIKKMS 60 (948)
T ss_pred HHHHHHHhcCCc-cceeEEeeccCccceeeeeecc
Confidence 477778899999 999998865 46799999997
No 138
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=75.72 E-value=1.7 Score=51.32 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=28.3
Q ss_pred ccccccCCCcceEEEEEE---CCc----EEEEEEccCC---CChhhhhc
Q 010658 466 RFRLKCAGDWTNVYRGRL---NHA----SVAIKTLNNG---LSEEDFQA 504 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L---~g~----~VAVK~L~~~---~~~~eF~~ 504 (505)
.+.||.|. ||.||+|.+ +|. .||||.|... +...+|..
T Consensus 697 ~~~lG~G~-FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~ 744 (1025)
T KOG1095|consen 697 LRVLGKGA-FGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLK 744 (1025)
T ss_pred eeeecccc-ccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHH
Confidence 45899999 999999998 343 4899999742 34456654
No 139
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=75.44 E-value=2.9 Score=43.12 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=29.9
Q ss_pred HhhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
..+.|.-...||.|+ ||.||++.- .+..||||++.
T Consensus 22 ~~~~y~~~~~lg~G~-~g~V~~~~~~~~~~~vaiK~~~ 58 (364)
T cd07875 22 VLKRYQNLKPIGSGA-QGIVCAAYDAILERNVAIKKLS 58 (364)
T ss_pred hhcceeEEEEeecCC-CeEEEEEEECCCCcEEEEEEeC
Confidence 356777788999999 999999986 47899999986
No 140
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.30 E-value=1.3e+02 Score=32.73 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 356 SCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGH 393 (505)
Q Consensus 356 ~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e 393 (505)
+++++.+.++..++++.++.+..+|..|+..-..-..+
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 44566666666667777777777777666654444333
No 141
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=74.91 E-value=3.1 Score=42.75 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=29.9
Q ss_pred HhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
..+.|.....||.|+ ||.||++.- .+..||||++..
T Consensus 15 ~~~~y~~~~~lg~G~-~g~V~~~~~~~~~~~vaiK~~~~ 52 (355)
T cd07874 15 VLKRYQNLKPIGSGA-QGIVCAAYDAVLDRNVAIKKLSR 52 (355)
T ss_pred hhhceeEEEEeeecC-CEEEEEEEecCCCceEEEEEeCC
Confidence 345677778999999 999999976 478999999963
No 142
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=74.61 E-value=3.4 Score=43.84 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=25.9
Q ss_pred hccccccccccCCCcceEEEEEEC-------CcEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRLN-------HASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L~-------g~~VAVK~L~~ 495 (505)
+.|.-..+||.|+ ||.||+|... +..||||++..
T Consensus 37 ~~~~~~~~LG~G~-fG~Vy~~~~~~~~~~~~~~~vavK~l~~ 77 (400)
T cd05105 37 DGLVLGRILGSGA-FGKVVEGTAYGLSRSQPVMKVAVKMLKP 77 (400)
T ss_pred cceehhheecCCC-CceEEEEEEcccCCCCCceEEEEEecCC
Confidence 3444556899999 9999999852 23699999964
No 143
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.49 E-value=2e+02 Score=34.51 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQS-CEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQL 398 (505)
Q Consensus 346 ee~l~~eke~~-e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l 398 (505)
++.++..+++. ..+..++++..+++..+..+...++.++........++-.++
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 445555555555555444444444444443333333333333
No 144
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=74.39 E-value=1.5e+02 Score=32.93 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=3.6
Q ss_pred cccccCC
Q 010658 467 FRLKCAG 473 (505)
Q Consensus 467 ~~iG~gg 473 (505)
.+||..|
T Consensus 218 riigreG 224 (514)
T TIGR03319 218 RIIGREG 224 (514)
T ss_pred cccCCCc
Confidence 4556544
No 145
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=74.22 E-value=3.9 Score=45.35 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=28.8
Q ss_pred hccccccccccCCCcceEEEEEE-C-CcEEEEEEccCC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL-N-HASVAIKTLNNG 496 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L-~-g~~VAVK~L~~~ 496 (505)
..|+. ..||.|. +|.||++.+ + |+.||||+++++
T Consensus 120 ~~fd~-~PlasaS-iaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 120 DDFDI-KPLASAS-IAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred HhcCh-hhhcCCC-ccEEEEEEECCCCCEEEEEEeCcc
Confidence 34665 6899999 999999999 5 899999999754
No 146
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.19 E-value=2.3e+02 Score=35.15 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 010658 341 SRMEIQRDLDSLKEQSCEVIR 361 (505)
Q Consensus 341 ~R~e~ee~l~~eke~~e~~~~ 361 (505)
.|..+++.|..-+++++++..
T Consensus 882 ~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334333333333333333
No 147
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=73.87 E-value=3 Score=45.58 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.5
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.-|.+ .++|.|- ||+||-|.- .|+.||||.+.
T Consensus 565 Qif~d-evLGSGQ-FG~VYgg~hRktGrdVAvKvId 598 (888)
T KOG4236|consen 565 QIFAD-EVLGSGQ-FGTVYGGKHRKTGRDVAVKVID 598 (888)
T ss_pred HhhhH-hhccCCc-ceeeecceecccCceeeeeeee
Confidence 33554 4889999 999999988 48999999986
No 148
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.36 E-value=2.2e+02 Score=34.53 Aligned_cols=11 Identities=18% Similarity=-0.037 Sum_probs=4.3
Q ss_pred chhcccCCCce
Q 010658 146 YFVHHHMPDYC 156 (505)
Q Consensus 146 ~~V~k~Ap~~C 156 (505)
+.|+......|
T Consensus 1373 e~vCG~p~apC 1383 (1758)
T KOG0994|consen 1373 EQVCGAPGAPC 1383 (1758)
T ss_pred HHhcCCCCCCC
Confidence 34444333335
No 149
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=73.31 E-value=43 Score=26.68 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010658 358 EVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQ 418 (505)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~ 418 (505)
.+..+.+++..+|...++....+.....+.......++.+|..=..+.......+.+++..
T Consensus 7 ~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAEIMNR 67 (69)
T PF08912_consen 7 NLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAEIMNR 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444555555444443322222222222223334444444344445555555555443
No 150
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=73.25 E-value=26 Score=38.67 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 369 RLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 369 ~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
+|..+.-+..+|.+.|.+.+..++++.+.+..+..++..++-++++.+++-
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 333444444555556666666666666666655555555555555554443
No 151
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.92 E-value=1.9e+02 Score=33.59 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHh
Q 010658 355 QSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDI----EELRRQRD 420 (505)
Q Consensus 355 ~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~----~~l~~~r~ 420 (505)
.|+..++++.++.++|...-.++..++.|+....--....+.....++.++.+|...+ +.+.++|.
T Consensus 411 dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK 480 (1265)
T KOG0976|consen 411 DHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK 480 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence 3344555566666666666666677777777777666667777777777776665544 44555554
No 152
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=72.76 E-value=3.5 Score=42.48 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=26.7
Q ss_pred hccccccccccCCCcceEEEEEEC---CcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRLN---HASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L~---g~~VAVK~L~ 494 (505)
++|.-...||.|+ ||.||+|... +..||||++.
T Consensus 30 ~~y~~~~~ig~G~-~g~Vy~a~~~~~~~~~vavK~~~ 65 (340)
T PTZ00426 30 EDFNFIRTLGTGS-FGRVILATYKNEDFPPVAIKRFE 65 (340)
T ss_pred hhcEEEEEEeecC-CeEEEEEEEECCCCeEEEEEEEE
Confidence 3466677999999 9999999862 3589999985
No 153
>PLN00200 argininosuccinate synthase; Provisional
Probab=72.73 E-value=31 Score=36.94 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=28.5
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
..+|+||+.|-.. |--++.|+.+.+ |..|+.+|+.
T Consensus 5 ~~kVvva~SGGlD-Ssvla~~L~e~~---G~eViav~id 39 (404)
T PLN00200 5 LNKVVLAYSGGLD-TSVILKWLRENY---GCEVVCFTAD 39 (404)
T ss_pred CCeEEEEEeCCHH-HHHHHHHHHHhh---CCeEEEEEEE
Confidence 3699999999997 888899986642 5678999984
No 154
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=72.73 E-value=3.4 Score=40.68 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHhhccccccccccCCCcceEEEEEEC--CcEEEEEEccC
Q 010658 458 LATEDFSERFRLKCAGDWTNVYRGRLN--HASVAIKTLNN 495 (505)
Q Consensus 458 ~AT~~Fs~~~~iG~gg~~G~VYkg~L~--g~~VAVK~L~~ 495 (505)
..+++|.....||.|+ ||.||+|... +..|++|.+..
T Consensus 16 ~~~~~~~~~~~l~~g~-~~~v~~~~~~~~~~~~~iK~~~~ 54 (286)
T cd06614 16 DPRELYKNLEKIGEGA-SGEVYKATDRATGKEVAIKKMRL 54 (286)
T ss_pred CccccchHhHhccCCC-CeEEEEEEEccCCcEEEEEEEec
Confidence 4566677778999999 9999999984 78999999863
No 155
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=72.49 E-value=2e+02 Score=33.69 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=4.1
Q ss_pred eEEEEEEee
Q 010658 36 SIVILHVTY 44 (505)
Q Consensus 36 ~IvllHV~~ 44 (505)
+-|||..++
T Consensus 28 Rt~I~gTh~ 36 (980)
T KOG0980|consen 28 RTIIVGTHD 36 (980)
T ss_pred hheeeeecc
Confidence 345554443
No 156
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=72.08 E-value=3.7 Score=41.46 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.2
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
|...+.||.|+ ||.||+|.. +|..||||.+.
T Consensus 27 f~~~~~lg~G~-~~~v~~~~~~~~~~~valK~~~ 59 (317)
T cd06635 27 FTDLREIGHGS-FGAVYFARDVRTNEVVAIKKMS 59 (317)
T ss_pred hhhhheeccCC-CeEEEEEEEcCCCcEEEEEEEe
Confidence 66777899999 999999987 47899999986
No 157
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=72.08 E-value=2.5 Score=45.64 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=29.7
Q ss_pred cccccCCCcceEEEEEECCc-EEEEEEccCC-CChhhhhc
Q 010658 467 FRLKCAGDWTNVYRGRLNHA-SVAIKTLNNG-LSEEDFQA 504 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L~g~-~VAVK~L~~~-~~~~eF~~ 504 (505)
+.||.|- ||.|+.|..+|. .||||.+... .....|.+
T Consensus 212 ~~LG~G~-FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~ 250 (468)
T KOG0197|consen 212 RELGSGQ-FGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLR 250 (468)
T ss_pred HHhcCCc-cceEEEEEEcCCCcccceEEeccccChhHHHH
Confidence 4799999 999999999765 9999999763 35566653
No 158
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=71.91 E-value=4.2 Score=40.62 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.8
Q ss_pred ccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.|.-...||.|+ ||.||+|.- +|..||||.+.
T Consensus 20 ~y~~~~~lg~g~-~g~v~~~~~~~~~~~vaiK~~~ 53 (297)
T cd06656 20 KYTRFEKIGQGA-SGTVYTAIDIATGQEVAIKQMN 53 (297)
T ss_pred hceeeeeeccCC-CeEEEEEEECCCCCEEEEEEEe
Confidence 344556899999 999999986 58899999986
No 159
>PRK09039 hypothetical protein; Validated
Probab=71.88 E-value=1.3e+02 Score=31.37 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 344 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELR 416 (505)
Q Consensus 344 e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~ 416 (505)
+++..++.-.+++...+....+....+..+..+...|..|+...+.++..++++...+...++.+.+++....
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555555555555555555444444444444444443
No 160
>PHA03209 serine/threonine kinase US3; Provisional
Probab=71.20 E-value=4.3 Score=41.94 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=27.7
Q ss_pred hhccccccccccCCCcceEEEEEEC--CcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRLN--HASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L~--g~~VAVK~L~ 494 (505)
..+|.-...||.|+ ||.||+|... +..||+|...
T Consensus 65 ~~~y~~~~~lg~G~-~g~Vy~~~~~~~~~~valK~~~ 100 (357)
T PHA03209 65 SLGYTVIKTLTPGS-EGRVFVATKPGQPDPVVLKIGQ 100 (357)
T ss_pred hcCcEEEEEecCCC-CeEEEEEEECCCCceEEEEeCC
Confidence 34577778999999 9999999984 5789999754
No 161
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=70.82 E-value=4.1 Score=40.70 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.3
Q ss_pred ccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 466 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
...||.|+ ||.||++.. +|..||||.+.
T Consensus 26 ~~~ig~g~-~g~v~~~~~~~~~~~v~iK~~~ 55 (297)
T cd06659 26 YIKIGEGS-TGIVCIAREKHSGRQVAVKMMD 55 (297)
T ss_pred hhhcCCCC-ceeEEEEEEcCCCCEEEEEEEE
Confidence 34799999 999999987 58899999986
No 162
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=70.39 E-value=0.79 Score=46.64 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=27.1
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
|+---++|+|. ||.|||+.- .|..||||++.-
T Consensus 35 FDi~~KLGEGS-YGSV~KAIH~EsG~v~AIK~VPV 68 (502)
T KOG0574|consen 35 FDIVGKLGEGS-YGSVHKAIHRESGHVLAIKKVPV 68 (502)
T ss_pred HHHHHHhcCCc-chHHHHHHHhccCcEEEEEecCc
Confidence 55556899999 999999987 589999999863
No 163
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=70.16 E-value=5 Score=41.89 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=26.9
Q ss_pred hccccccccccCCCcceEEEEEE-------CCcEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L-------~g~~VAVK~L~~ 495 (505)
++|.-...||.|+ ||.||+|.. .+..||||++..
T Consensus 38 ~~~~~~~~LG~G~-fg~V~~~~~~~~~~~~~~~~vavK~~~~ 78 (374)
T cd05106 38 DNLQFGKTLGAGA-FGKVVEATAFGLGKEDNVLRVAVKMLKA 78 (374)
T ss_pred HHceehheecCCC-cccEEEEEEecCCcccccceeEEEeccC
Confidence 3566677999999 999999874 124799999964
No 164
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=70.08 E-value=4.7 Score=40.67 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
|.....||.|+ ||.||+|.. .|..|+||.+.
T Consensus 23 ~~~~~~lg~g~-~g~v~~~~~~~~~~~v~ik~~~ 55 (313)
T cd06633 23 FVGLHEIGHGS-FGAVYFATNSHTNEVVAVKKMS 55 (313)
T ss_pred hhcceeeccCC-CeEEEEEEECCCCcEEEEEEEe
Confidence 44455799999 999999987 47899999986
No 165
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=69.88 E-value=39 Score=35.65 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 1 MDTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 1 M~~~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
|.....+|+||+.|... |--++.+. ...|..|+.||+.
T Consensus 1 ~~~~~~kVlVa~SGGvD-Ssv~a~lL----~~~G~eV~av~~~ 38 (362)
T PRK14664 1 MKESKKRVLVGMSGGID-STATCLML----QEQGYEIVGVTMR 38 (362)
T ss_pred CCCCCCEEEEEEeCCHH-HHHHHHHH----HHcCCcEEEEEec
Confidence 77788999999999997 76555443 2346678888883
No 166
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=69.79 E-value=38 Score=33.89 Aligned_cols=90 Identities=9% Similarity=0.049 Sum_probs=54.3
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHH
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLL 84 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL 84 (505)
..+|+||..|... |--.+.-|.+.+ |+.++++-|..|. +|.. -+
T Consensus 17 ~~kv~vAfSGGvD-SslLa~la~~~l---G~~v~AvTv~sP~-----~p~~---------------------------e~ 60 (269)
T COG1606 17 KKKVVVAFSGGVD-SSLLAKLAKEAL---GDNVVAVTVDSPY-----IPRR---------------------------EI 60 (269)
T ss_pred cCeEEEEecCCcc-HHHHHHHHHHHh---ccceEEEEEecCC-----CChh---------------------------hh
Confidence 3499999999987 664444444544 5788888886552 2210 02
Q ss_pred HHHHhhhccCccEEEEEecC-----------------CCChHHHHHHHHHHcCCCEEEEccCC
Q 010658 85 SKYLGFCGKVKAEILKVEKS-----------------DEPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 85 ~~~~~~c~~v~ve~~vve~~-----------------~~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
+++..++..+++...++..+ -..+.+.|+++|.+.|.|.++=|+..
T Consensus 61 e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 61 EEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred hHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 22222333222222222210 01367899999999999999999975
No 167
>PRK03918 chromosome segregation protein; Provisional
Probab=69.45 E-value=2.3e+02 Score=33.16 Aligned_cols=7 Identities=0% Similarity=-0.050 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 010658 21 RTLDWTI 27 (505)
Q Consensus 21 ~AL~WAl 27 (505)
.|+.||+
T Consensus 41 ~ai~~~l 47 (880)
T PRK03918 41 EAILVGL 47 (880)
T ss_pred HHHHHHh
Confidence 4555554
No 168
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=69.36 E-value=48 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=26.5
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
||+|++-|-.. |-.|+.||.+ .|..|+.|++..|
T Consensus 1 kv~v~~SGGkD-S~~al~~a~~----~G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKD-SCYALYRALE----EGHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHH-HHHHHHHHHH----cCCEEEEEEEEec
Confidence 58899999997 9989999877 3667777776544
No 169
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=69.11 E-value=2.2e+02 Score=32.87 Aligned_cols=9 Identities=11% Similarity=0.050 Sum_probs=5.1
Q ss_pred CEEEEEecC
Q 010658 6 PKVYVAVGN 14 (505)
Q Consensus 6 ~kIlVAVDg 14 (505)
--|.||.-.
T Consensus 406 TvIrVPLK~ 414 (1259)
T KOG0163|consen 406 TVIRVPLKI 414 (1259)
T ss_pred eEEEeeccH
Confidence 346666653
No 170
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.09 E-value=1.8e+02 Score=31.70 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHcCCCE
Q 010658 108 VHKLILDLVSRLTITK 123 (505)
Q Consensus 108 ~~~~Ive~a~~~~idl 123 (505)
..++|++|-.+.|.|.
T Consensus 109 c~~~I~~yL~engfd~ 124 (622)
T COG5185 109 CQEEIYDYLKENGFDI 124 (622)
T ss_pred HHHHHHHHHHHcCCCc
Confidence 5788999988888775
No 171
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=69.08 E-value=30 Score=31.64 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhccCccEEEEE
Q 010658 22 TLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGKVKAEILKV 101 (505)
Q Consensus 22 AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~v~ve~~vv 101 (505)
||..| ...+..|+.|.|.+|.. .-+. ...+. ...-..+-|.....-+.+.++...++
T Consensus 16 aL~~A----~~~~~~v~~vfv~d~~~---~~~~--------~~~~~--------r~~Fl~~sL~~L~~~L~~~g~~L~v~ 72 (165)
T PF00875_consen 16 ALHAA----AQNGDPVLPVFVFDPEE---FHPY--------RIGPR--------RRRFLLESLADLQESLRKLGIPLLVL 72 (165)
T ss_dssp HHHHH----HHTTSEEEEEEEE-HHG---GTTC--------SSCHH--------HHHHHHHHHHHHHHHHHHTTS-EEEE
T ss_pred HHHHH----HHcCCCeEEEEEecccc---cccc--------cCcch--------HHHHHHHHHHHHHHHHHhcCcceEEE
Confidence 55555 55677899999987731 0000 00111 11122233444444445678888888
Q ss_pred ecCCCChHHHHHHHHHHcCCCEEEEccC
Q 010658 102 EKSDEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 102 e~~~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
.| ++.+.|.+++++++|+.|+.-..
T Consensus 73 ~g---~~~~~l~~l~~~~~~~~V~~~~~ 97 (165)
T PF00875_consen 73 RG---DPEEVLPELAKEYGATAVYFNEE 97 (165)
T ss_dssp ES---SHHHHHHHHHHHHTESEEEEE--
T ss_pred ec---chHHHHHHHHHhcCcCeeEeccc
Confidence 87 79999999999999999998654
No 172
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=68.71 E-value=2.7 Score=46.43 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=31.4
Q ss_pred ccccHHHHHHHhhccccccccccCCCcceEEEEEECCcEEEEEEcc
Q 010658 449 REYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLN 494 (505)
Q Consensus 449 ~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L~g~~VAVK~L~ 494 (505)
.++.|++|.+ -..+|.|. -|.||.|.|.+.+||||+++
T Consensus 119 WeiPFe~IsE-------LeWlGSGa-QGAVF~Grl~netVAVKKV~ 156 (904)
T KOG4721|consen 119 WEIPFEEISE-------LEWLGSGA-QGAVFLGRLHNETVAVKKVR 156 (904)
T ss_pred ccCCHHHhhh-------hhhhccCc-ccceeeeeccCceehhHHHh
Confidence 4577776643 34789999 99999999999999999985
No 173
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.49 E-value=1.9e+02 Score=32.30 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhHhHHHHhH
Q 010658 404 ARAEIVKDIEELRRQRDVLHRRI 426 (505)
Q Consensus 404 ~~~~~~~~~~~l~~~r~~~~~~~ 426 (505)
...++...+..|++.-..+...+
T Consensus 398 eq~ei~e~l~~Lrk~E~eAr~kL 420 (569)
T PRK04778 398 EQEKLSEMLQGLRKDELEAREKL 420 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333333
No 174
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=68.41 E-value=5.6 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.0
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
..|.-...||.|+ ||.||+|.- ++..|++|.+.
T Consensus 19 ~~~~~~~~lg~g~-~g~v~~~~~~~~~~~v~iK~~~ 53 (293)
T cd06647 19 KKYTRFEKIGQGA-SGTVYTAIDVATGQEVAIKQMN 53 (293)
T ss_pred hhceeeeEecCCC-CeEEEEEEEcCCCCEEEEEEec
Confidence 3455566899999 999999986 57899999985
No 175
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.09 E-value=1.3e+02 Score=29.84 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 319 WAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQL 398 (505)
Q Consensus 319 ~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l 398 (505)
.++..+..+|..++. +++.-++--+.|.....+.+.++..+..-... ....+..|..++.+....+..++...
T Consensus 26 ~~L~e~e~~a~~Lee----k~k~aeeea~~Le~k~~eaee~~~rL~~~~~~---~~eEk~~Le~e~~e~~~~i~~l~ee~ 98 (246)
T PF00769_consen 26 EALEESEETAEELEE----KLKQAEEEAEELEQKRQEAEEEKQRLEEEAEM---QEEEKEQLEQELREAEAEIARLEEES 98 (246)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555543 22222222234444444444444433332222 34555667788888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010658 399 EKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~ 417 (505)
.....+...+..++...+.
T Consensus 99 ~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 99 ERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7666666666665555444
No 176
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.05 E-value=3.3e+02 Score=34.37 Aligned_cols=63 Identities=14% Similarity=0.038 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 353 KEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 353 ke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
...++++..++++....+.....+...++.++......+.++..++.........+..+...+
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~ 416 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQY 416 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555554444444444444333
No 177
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.99 E-value=66 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSSL 373 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~ 373 (505)
++|+.+.|..+.++-+.+..++++...++..+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444434344444444333333333
No 178
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.81 E-value=1.8e+02 Score=31.27 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=15.0
Q ss_pred HHHHHhhccccccccccCCCcceE
Q 010658 455 DIRLATEDFSERFRLKCAGDWTNV 478 (505)
Q Consensus 455 el~~AT~~Fs~~~~iG~gg~~G~V 478 (505)
+...+|+.|.....|...|.||++
T Consensus 263 dkL~ktNv~n~~F~I~~~G~fgtI 286 (447)
T KOG2751|consen 263 DKLRKTNVFNATFHIWHDGEFGTI 286 (447)
T ss_pred HHHHhhhhhhheeeEeeccccccc
Confidence 345677777777777654446654
No 179
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=67.81 E-value=5.5 Score=39.75 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.8
Q ss_pred cccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 467 FRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.+||.|+ ||.||+|.. +|..||||++.
T Consensus 26 ~~lg~g~-~g~v~~~~~~~~~~~v~iK~~~ 54 (292)
T cd06657 26 IKIGEGS-TGIVCIATVKSSGKLVAVKKMD 54 (292)
T ss_pred HHcCCCC-CeEEEEEEEcCCCeEEEEEEec
Confidence 3789999 999999988 57899999985
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.64 E-value=92 Score=30.95 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010658 391 KGHAEAQLEKAVIARAEIVK 410 (505)
Q Consensus 391 ~~e~e~~l~~~~~~~~~~~~ 410 (505)
...|+.++..+......+..
T Consensus 77 k~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 181
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.30 E-value=2.4e+02 Score=34.38 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=27.6
Q ss_pred hHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 327 RADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELS 381 (505)
Q Consensus 327 ~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~ 381 (505)
..++.+....++-..++.++..+...+++++.+.+..+.+...++.+...+.+|+
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344433333444455556666666666666655555555444444444444444
No 182
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=67.05 E-value=4.7 Score=47.54 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=29.0
Q ss_pred hhccccccccccCCCcceEEEEEE-CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L-~g~~VAVK~L~ 494 (505)
-..|.-...||.|+ ||.||+|.- +|..||+|.=.
T Consensus 697 ~~~~~I~~e~G~g~-y~~vy~a~~~~~~~~alK~e~ 731 (974)
T KOG1166|consen 697 GEKFCISKEIGEGS-YGSVYVATHSNGKLVALKVEK 731 (974)
T ss_pred ceeEEEEeeecccc-ceEEEEeecCCCcEEEEEeec
Confidence 45577788999999 999999987 68999999754
No 183
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.02 E-value=2.5e+02 Score=32.56 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAK 391 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 391 (505)
|..-+++.+.++...+.+.+++..+.+++..|.+|++..-..+
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555666666666666666666554443
No 184
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=66.73 E-value=58 Score=33.54 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEee
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTY 44 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~ 44 (505)
+.+|+||+.|-.. |--++.++.+.+ |..++.|||..
T Consensus 16 ~~kVvValSGGVD-Ssvla~ll~~~~---G~~v~av~vd~ 51 (311)
T TIGR00884 16 DAKVIIALSGGVD-SSVAAVLAHRAI---GDRLTCVFVDH 51 (311)
T ss_pred CCcEEEEecCChH-HHHHHHHHHHHh---CCCEEEEEEeC
Confidence 4789999999987 877777765543 56899999943
No 185
>PRK04527 argininosuccinate synthase; Provisional
Probab=66.54 E-value=55 Score=35.03 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=27.6
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEee
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTY 44 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~ 44 (505)
++|+||.-|-.. |--++.|+.+ .|..|+.|++.-
T Consensus 3 ~kVvVA~SGGvD-SSvla~~l~e----~G~~Viavt~d~ 36 (400)
T PRK04527 3 KDIVLAFSGGLD-TSFCIPYLQE----RGYAVHTVFADT 36 (400)
T ss_pred CcEEEEEcCChH-HHHHHHHHHH----cCCcEEEEEEEe
Confidence 689999999997 8888999766 266789999843
No 186
>PF15456 Uds1: Up-regulated During Septation
Probab=66.47 E-value=95 Score=27.60 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 358 EVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHA 394 (505)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~ 394 (505)
.+++|+--...++..+..... |+.++.++...+..+
T Consensus 26 ~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 26 ELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 344444444444444443333 555565555554444
No 187
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=66.09 E-value=41 Score=30.80 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=24.2
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
+|+|++-|-.. |--++.++.. .+..|+++|+.
T Consensus 1 kvlv~~SGG~D-S~~~~~~~~~----~~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLD-STTCLAWAKK----EGYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHH-HHHHHHHHHH----cCCcEEEEEEE
Confidence 58999999987 8877766654 25568888884
No 188
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.92 E-value=50 Score=34.26 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010658 368 NRLSSLIELQSELSNKLQL 386 (505)
Q Consensus 368 ~~l~~~~~~~~~l~~~~~~ 386 (505)
.++++++.+...|..+.++
T Consensus 260 qq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 260 QQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 4444444555555554444
No 189
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=65.73 E-value=1.3e+02 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010658 284 ERTEFMKSKINEAREMI 300 (505)
Q Consensus 284 e~~~~l~~~l~ea~~~~ 300 (505)
|+++.+..+|++|.-..
T Consensus 60 E~~e~~e~qLkEAk~ia 76 (205)
T KOG1003|consen 60 EKMEAQEAQLKEAKHIA 76 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666665444
No 190
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=65.63 E-value=5.5 Score=43.41 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=22.3
Q ss_pred cccccCCCcceEEEEEE--C-C--cE-EEEEEcc
Q 010658 467 FRLKCAGDWTNVYRGRL--N-H--AS-VAIKTLN 494 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L--~-g--~~-VAVK~L~ 494 (505)
.+||+|. ||.||+|.| . + .. ||||...
T Consensus 163 kkLGeGa-FGeV~~G~l~~~~~~~~~~VAvK~~k 195 (474)
T KOG0194|consen 163 KKLGEGA-FGEVFKGKLKLKNGFKVVPVAVKTTK 195 (474)
T ss_pred ceeeccc-ccEEEEEEEEecCCceeeeeEEEeec
Confidence 5999999 999999999 2 2 23 8999886
No 191
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=65.41 E-value=73 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=26.6
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
+|+|++-|... |--++.|+.+ .|..+++||+..+
T Consensus 1 ~vlv~~SGG~D-S~~la~ll~~----~g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGID-SPVAAWLLMK----RGIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChh-HHHHHHHHHH----cCCeEEEEEEeCC
Confidence 58999999997 8877777755 3778999999533
No 192
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=65.37 E-value=6.1 Score=39.57 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.1
Q ss_pred hhccccccccccCCCcceEEEEEE-------CCcEEEEEEccC
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL-------NHASVAIKTLNN 495 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L-------~g~~VAVK~L~~ 495 (505)
.++|.-.+.||.|+ ||.||+|.. .+..||||++..
T Consensus 34 ~~~~~~~~~ig~G~-~g~V~~~~~~~~~~~~~~~~vavK~~~~ 75 (302)
T cd05055 34 RNNLSFGKTLGAGA-FGKVVEATAYGLSKSDAVMKVAVKMLKP 75 (302)
T ss_pred HHHeEEcceeeccC-CeeEEEEEEecCCCCCceeEEEEEecCc
Confidence 35688888999999 999999874 134799999863
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.35 E-value=63 Score=25.11 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 367 KNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 367 ~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
-++|..+..-...++++++++.....+|+.++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455556666666665556555555
No 194
>PRK03918 chromosome segregation protein; Provisional
Probab=65.29 E-value=2.8e+02 Score=32.52 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=4.3
Q ss_pred eEEEEEeCCe
Q 010658 156 CELFIICGGK 165 (505)
Q Consensus 156 C~V~vV~kgk 165 (505)
+.+.|...|+
T Consensus 73 v~~~f~~~~~ 82 (880)
T PRK03918 73 IELKFEKNGR 82 (880)
T ss_pred EEEEEEECCe
Confidence 3344444454
No 195
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.17 E-value=1.5e+02 Score=29.47 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.6
Q ss_pred HHHhHhHHHHhHH
Q 010658 415 LRRQRDVLHRRIE 427 (505)
Q Consensus 415 l~~~r~~~~~~~e 427 (505)
+...|...+.++-
T Consensus 142 l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 142 LARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 196
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=65.14 E-value=3.4 Score=46.11 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=31.4
Q ss_pred ccccccccCCCcceEEEEEEC--CcEEEEEEccCCC-Chhhhhc
Q 010658 464 SERFRLKCAGDWTNVYRGRLN--HASVAIKTLNNGL-SEEDFQA 504 (505)
Q Consensus 464 s~~~~iG~gg~~G~VYkg~L~--g~~VAVK~L~~~~-~~~eF~~ 504 (505)
.-.+++|.|- ||-||-|+.. ..+||||-|..+. -..+|.+
T Consensus 270 tMkhKLGGGQ-YGeVYeGvWKkyslTvAVKtLKEDtMeveEFLk 312 (1157)
T KOG4278|consen 270 TMKHKLGGGQ-YGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLK 312 (1157)
T ss_pred eeeeccCCCc-ccceeeeeeeccceeeehhhhhhcchhHHHHHH
Confidence 4467999998 9999999993 5799999997543 4567764
No 197
>PHA03212 serine/threonine kinase US3; Provisional
Probab=65.09 E-value=6.9 Score=41.28 Aligned_cols=32 Identities=16% Similarity=-0.053 Sum_probs=26.5
Q ss_pred ccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.|.-...||.|+ ||.||++.- .+..||||...
T Consensus 93 ~y~~~~~lg~G~-~g~V~~~~d~~~~~~vaiK~~~ 126 (391)
T PHA03212 93 GFSILETFTPGA-EGFAFACIDNKTCEHVVIKAGQ 126 (391)
T ss_pred CcEEEEEEcCCC-CeEEEEEEECCCCCEEEEechh
Confidence 355567899999 999999987 47899999864
No 198
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=65.07 E-value=6.7 Score=39.18 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.7
Q ss_pred ccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
+|.-...||.|+ ||.||+|.- .|..|+||.+.
T Consensus 20 ~y~~~~~lg~g~-~g~vy~~~~~~~~~~v~iK~~~ 53 (296)
T cd06655 20 KYTRYEKIGQGA-SGTVFTAIDVATGQEVAIKQIN 53 (296)
T ss_pred eEEEEEEEecCC-CeEEEEEEEcCCCcEEEEEEEe
Confidence 355566899999 999999985 58899999886
No 199
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.65 E-value=33 Score=37.05 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhccCccEEEE
Q 010658 21 RTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGKVKAEILK 100 (505)
Q Consensus 21 ~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~v~ve~~v 100 (505)
.||..|++.+...+..|+.|.|.+|.. +.. + .. ...-+.+-|.....-+.+.++...+
T Consensus 39 ~aL~~A~~~a~~~~~~vl~vyi~dp~~-----~~~-~--------~~--------r~~Fl~esL~~L~~~L~~~g~~L~v 96 (454)
T TIGR00591 39 WALIAAQTLALKKKLPLHVCFCLVDFF-----LAA-T--------RR--------HYFFMLGGLDEVANECERLIIPFHL 96 (454)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeCCCc-----ccc-c--------HH--------HHHHHHHHHHHHHHHHHHcCCceEE
Confidence 477777765544466789999987742 111 0 00 1112223344444444556777777
Q ss_pred EecCCCChHHHHHHHHHHcCCCEEEEccC
Q 010658 101 VEKSDEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 101 ve~~~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
..| +|.+.|.+++++++|+.|+.-..
T Consensus 97 ~~g---~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 97 LDG---PPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred eec---ChHHHHHHHHHHcCCCEEEEecc
Confidence 776 89999999999999999998653
No 200
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.61 E-value=1.8e+02 Score=30.74 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 359 VIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIE 413 (505)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~ 413 (505)
+.++++....++...++++++...+.+.....+.++-.+|...-.++...+++++
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555544444444444443
No 201
>PRK00509 argininosuccinate synthase; Provisional
Probab=64.50 E-value=79 Score=33.85 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=28.7
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEee
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTY 44 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~ 44 (505)
.+|+||+.|-.. |--++.|+.+.+ |..|+.+|+.-
T Consensus 3 ~kVvva~SGGlD-Ssvla~~l~e~l---G~eViavt~d~ 37 (399)
T PRK00509 3 KKVVLAYSGGLD-TSVIIKWLKETY---GCEVIAFTADV 37 (399)
T ss_pred CeEEEEEcCCHH-HHHHHHHHHHhh---CCeEEEEEEec
Confidence 589999999997 888888987653 56799999843
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.45 E-value=1.2e+02 Score=35.18 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=70.5
Q ss_pred HHhHHhhHHHHHHHHHH-----HHHH--HHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 301 RLKKKETKDDAERCAKA-----KWAI--CLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSL 373 (505)
Q Consensus 301 ~~~r~~~~~~~~~~~ka-----e~~~--~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~ 373 (505)
+.+|.+.|..+...++. .+.+ +.-.+..+++|..+..-+...-|.|+.=.-.++.|+++-+..-..+....+.
T Consensus 590 ~lsr~e~ysra~~kqq~~l~~~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~l 669 (970)
T KOG0946|consen 590 RLSRHELYSRASMKQQPQLKSNTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIREL 669 (970)
T ss_pred HhhHhHHHHHHhhccCccCCCCchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665433332 0000 1223455666665555554444433332333455666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 374 IELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
+-+...+..+..++....++++.++..-..+...+..+.+-|+.+-
T Consensus 670 D~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 670 DYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777888777777667777777776665543
No 203
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.34 E-value=3.7e+02 Score=33.61 Aligned_cols=40 Identities=25% Similarity=0.157 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 390 AKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 390 ~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
.+.++...+......+.+.....+++++..+.+..+...+
T Consensus 341 ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~ 380 (1353)
T TIGR02680 341 DAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDA 380 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444445544444444444333
No 204
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.14 E-value=88 Score=29.75 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 010658 378 SELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRR 425 (505)
Q Consensus 378 ~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~ 425 (505)
..|+..+.+....+..+.+++..-.++...+..++.+|+.+.+.++.+
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555666655544444
No 205
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=63.62 E-value=2.4e+02 Score=31.24 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=6.6
Q ss_pred HhhhhHHHHhhhhH
Q 010658 323 LCNSRADQLESLTK 336 (505)
Q Consensus 323 ~~~~~~~~~e~~~~ 336 (505)
.+.-++++++.-..
T Consensus 94 ~~k~r~~e~e~~~~ 107 (522)
T PF05701_consen 94 LAKFRAKELEQGIA 107 (522)
T ss_pred HhHHHHHHHhhhhc
Confidence 33345555554333
No 206
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=63.60 E-value=5.1 Score=44.81 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=28.2
Q ss_pred cccccccCCCcceEEEEEE-C---C--cEEEEEEccCCC---Chhhhhc
Q 010658 465 ERFRLKCAGDWTNVYRGRL-N---H--ASVAIKTLNNGL---SEEDFQA 504 (505)
Q Consensus 465 ~~~~iG~gg~~G~VYkg~L-~---g--~~VAVK~L~~~~---~~~eF~~ 504 (505)
...+||.|- ||.||+|+. + | ..||||....+. ..+.|.+
T Consensus 393 l~r~iG~Gq-FGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflq 440 (974)
T KOG4257|consen 393 LKRLIGEGQ-FGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQ 440 (974)
T ss_pred HHHhhcCCc-ccceeeeEecccccCcceeeeeehhccCCChhhHHHHHH
Confidence 457899999 999999997 2 3 468999886422 3455654
No 207
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=63.45 E-value=28 Score=37.55 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=28.3
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhh--cCCCeEEEEEEee
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWK--AQSISIVILHVTY 44 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~--~~g~~IvllHV~~ 44 (505)
.+.+|+|||.|-.. |.. |-+.+..+. ..+-.|+++||..
T Consensus 14 ~~~~ilvavSGG~D-S~~-Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 14 TSRQILVAFSGGLD-STV-LLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CCCeEEEEecCCHH-HHH-HHHHHHHHHHhcCCCeEEEEEEeC
Confidence 35899999999997 884 545554443 3467899999953
No 208
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.40 E-value=1.7e+02 Score=29.55 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=53.6
Q ss_pred HHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 329 DQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA 404 (505)
Q Consensus 329 ~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~ 404 (505)
.++|.+|...+ .++..........+..++.++...+..++++..+...|..+.......+.+++..+......
T Consensus 187 ~e~e~~y~~k~---~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 187 EELEEWYQSKL---EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccc---ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 35566665544 34555666677778888888888888888888888888888888888888888777754433
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.29 E-value=1.6e+02 Score=29.07 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEF 428 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~ 428 (505)
+..+..-+++++++.+.+. ..+.....+|+....-++.+|.-+..+..+..........+..+-..+..+++.
T Consensus 27 ~e~ee~~L~e~~kE~~~L~-------~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELL-------QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555444443 333444445556666666666666666666655555555555555555566666
Q ss_pred HHhh
Q 010658 429 CKEK 432 (505)
Q Consensus 429 ~~~~ 432 (505)
++..
T Consensus 100 ~R~e 103 (230)
T PF10146_consen 100 LRKE 103 (230)
T ss_pred HHHH
Confidence 6543
No 210
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=62.81 E-value=8.2 Score=38.45 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.1
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
|.....||.|+ ||.||+|.- .|..|+||.+..
T Consensus 22 y~~~~~lg~g~-~~~v~~~~~~~~~~~v~ik~~~~ 55 (296)
T cd06654 22 YTRFEKIGQGA-SGTVYTAMDVATGQEVAIRQMNL 55 (296)
T ss_pred eeeEEEecCCC-CeEEEEEEECCCCcEEEEEEEec
Confidence 44456799999 999999986 578999998863
No 211
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=62.71 E-value=7.7 Score=38.63 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.6
Q ss_pred cccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 467 FRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
..||.|+ ||.||++.. ++..||||++.
T Consensus 28 ~~lg~g~-~g~v~~~~~~~~~~~vaiK~~~ 56 (292)
T cd06658 28 IKIGEGS-TGIVCIATEKHTGKQVAVKKMD 56 (292)
T ss_pred hcccCCC-CeEEEEEEECCCCCEEEEEEEe
Confidence 3689999 999999987 47899999985
No 212
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=62.37 E-value=9 Score=38.29 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=26.5
Q ss_pred hccccccccccCCCcceEEEEEEC---------CcEEEEEEccC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRLN---------HASVAIKTLNN 495 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L~---------g~~VAVK~L~~ 495 (505)
+.|.-...||+|+ ||.||++.-. +..+|+|.+..
T Consensus 18 ~~~~i~~~lg~G~-~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~ 60 (307)
T cd05098 18 DRLVLGKPLGEGC-FGQVVMAEAIGLDKEKPNRVTKVAVKMLKS 60 (307)
T ss_pred HHeEEeeeeccCC-CeeEEEeEEeccCCcccCccceEEEEeccC
Confidence 4566677999999 9999998741 24699999874
No 213
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.97 E-value=1.7e+02 Score=32.82 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=8.4
Q ss_pred ccccccHHHHHHHh
Q 010658 447 AFREYAAEDIRLAT 460 (505)
Q Consensus 447 ~~~~~s~~el~~AT 460 (505)
.+..|++..|..+-
T Consensus 524 ~ve~~t~~~Ie~~e 537 (652)
T COG2433 524 VVEKLTLEAIEEAE 537 (652)
T ss_pred hhhhhhHHHHHhHH
Confidence 34557777666554
No 214
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=61.90 E-value=2.8e+02 Score=31.50 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=7.3
Q ss_pred HhhhhhhhhHHHHH
Q 010658 273 AEQIDSNMSVAERT 286 (505)
Q Consensus 273 ~~~~~~~~~eae~~ 286 (505)
..++..-|.+.++.
T Consensus 249 ~KQ~rk~meEreK~ 262 (811)
T KOG4364|consen 249 LKQLRKNMEEREKE 262 (811)
T ss_pred HHHHHHhHHHHHHH
Confidence 34455555666544
No 215
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.89 E-value=1.1e+02 Score=34.66 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=30.8
Q ss_pred hhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 326 SRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSS----LIELQSELSNKLQLSTMAKGHAEAQLEKA 401 (505)
Q Consensus 326 ~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~e~e~~l~~~ 401 (505)
.+.++++..+..-....+++++.++.-+.+++++..+++++...+.. ..++...|+.++........+.++++...
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443332222223333333444444444444444444333332 22233345555555555555555555433
No 216
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=61.79 E-value=8.7 Score=37.99 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=25.5
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
|..-+.||.|+ +|.||+|.. ++..++||++.
T Consensus 21 ~~~~~~lg~g~-~g~v~~~~~~~~~~~~~iK~~~ 53 (285)
T cd06648 21 LDNFVKIGEGS-TGIVCIATDKSTGRQVAVKKMD 53 (285)
T ss_pred hhcceEeccCC-CeEEEEEEECCCCCEEEEEEEe
Confidence 33445899999 999999986 57899999885
No 217
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.47 E-value=1.9e+02 Score=29.34 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 362 DVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDI 412 (505)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~ 412 (505)
|+++++..|...++.=.|-|-+--|+.++++|+.+++..-..-...|+..+
T Consensus 90 EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444445554455455555555555666665555553333333444333
No 218
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=60.89 E-value=4.7 Score=44.51 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=26.6
Q ss_pred HHHhhccccccccccCCCcceEEEEEECCcEEEEEEc
Q 010658 457 RLATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTL 493 (505)
Q Consensus 457 ~~AT~~Fs~~~~iG~gg~~G~VYkg~L~g~~VAVK~L 493 (505)
...+..|...+.||.|+ ||.||+|.+.+..+++|+.
T Consensus 329 ~~~~~~~~~~~~iG~G~-~g~Vy~~~~~~~~~v~k~~ 364 (535)
T PRK09605 329 EEVKRRKIPDHLIGKGA-EADIKKGEYLGRDAVIKER 364 (535)
T ss_pred cccccccCccceeccCC-cEEEEEEeecCccceeEEE
Confidence 33445556778999999 9999999987665555543
No 219
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=60.78 E-value=63 Score=26.97 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=23.8
Q ss_pred EEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 8 VYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 8 IlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
|+|++.|... |.-.+.++.+. +..++++||.++
T Consensus 1 v~v~~SGG~D-S~~ll~~l~~~----~~~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKD-SSVAAALLKKL----GYQVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHH-HHHHHHHHHHh----CCCEEEEEEcCC
Confidence 6899999997 87666666553 226899999543
No 220
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=60.76 E-value=2e+02 Score=29.41 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 362 DVEESKNRLSSLIELQSELSNKLQLS 387 (505)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~l~~~~~~~ 387 (505)
+.+.++.+....-....+|-+++++.
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~ 191 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEY 191 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 221
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.74 E-value=2.4e+02 Score=30.24 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010658 349 LDSLKEQSC 357 (505)
Q Consensus 349 l~~eke~~e 357 (505)
|++-+++.-
T Consensus 57 l~~Lq~e~~ 65 (459)
T KOG0288|consen 57 LNRLQEENT 65 (459)
T ss_pred HHHHHHHHH
Confidence 333333333
No 222
>PRK12705 hypothetical protein; Provisional
Probab=60.42 E-value=2.6e+02 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=6.3
Q ss_pred HHHHhHhHHHHhHHH
Q 010658 414 ELRRQRDVLHRRIEF 428 (505)
Q Consensus 414 ~l~~~r~~~~~~~e~ 428 (505)
+++++....+++.+.
T Consensus 154 ~~~~e~~~~i~~~e~ 168 (508)
T PRK12705 154 ELEEEKAQRVKKIEE 168 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 223
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=60.31 E-value=8.8 Score=42.49 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.5
Q ss_pred ccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.|.-.++||+|| |..||.+.- .|..||+|++.
T Consensus 19 ~Y~~g~~LGkGg-FA~cYe~~~~~tge~~A~KvVp 52 (592)
T KOG0575|consen 19 RYKRGRFLGKGG-FARCYEARDLDTGEVVAVKVVP 52 (592)
T ss_pred eeeeeeeeccCc-ceEEEEEEEcCCCcEEEEEEee
Confidence 355677999999 999999987 48999999996
No 224
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.20 E-value=2.7e+02 Score=32.59 Aligned_cols=19 Identities=11% Similarity=-0.125 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHcCCCEEEE
Q 010658 108 VHKLILDLVSRLTITKLVM 126 (505)
Q Consensus 108 ~~~~Ive~a~~~~idlLVm 126 (505)
..-+...++..++.-.-.+
T Consensus 277 ~l~a~a~~a~~~~~~~P~~ 295 (782)
T PRK00409 277 FIFARARYAKALKATFPLF 295 (782)
T ss_pred HHHHHHHHHHHCCCccceE
Confidence 3344444555554443333
No 225
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=60.12 E-value=7.8 Score=33.15 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 010658 338 DVASRMEIQRDLDSLKEQSCEVIR 361 (505)
Q Consensus 338 e~~~R~e~ee~l~~eke~~e~~~~ 361 (505)
|-.+|.+++.....-..+++++-.
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTa 29 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTA 29 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 226
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.08 E-value=2e+02 Score=29.17 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEE 365 (505)
Q Consensus 286 ~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~ 365 (505)
++-||-+|+|+..... -++++-.-+ -.+-+.--|.|+-+|- +|=|..=+|...+.|+.++|.=+|-
T Consensus 70 iRHLkakLkes~~~l~--dRetEI~eL-----------ksQL~RMrEDWIEEEC-HRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 70 IRHLKAKLKESENRLH--DRETEIDEL-----------KSQLARMREDWIEEEC-HRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHH-----------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887663 222222221 2233445567665554 8888888888888899988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 366 SKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEK 400 (505)
Q Consensus 366 ~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~ 400 (505)
.++.|. +.++-|+.+=.-|+-...||+.
T Consensus 136 mrssL~-------ekDkGiQKYFvDINiQN~KLEs 163 (305)
T PF15290_consen 136 MRSSLA-------EKDKGIQKYFVDINIQNKKLES 163 (305)
T ss_pred HHhhhc-------hhhhhHHHHHhhhhhhHhHHHH
Confidence 777774 4466666666566666666663
No 227
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.05 E-value=2.8e+02 Score=33.34 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=43.9
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 330 QLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQL 398 (505)
Q Consensus 330 ~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l 398 (505)
.-+...-.+..++.++|+.+...++.+++..+++..+...+.++..-..++-..+.........++.+-
T Consensus 392 ~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~ 460 (1141)
T KOG0018|consen 392 SDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEP 460 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence 333444567778888898888888888888887777776666655555555444444444443333333
No 228
>PRK00919 GMP synthase subunit B; Validated
Probab=60.05 E-value=97 Score=31.92 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=28.6
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEee
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTY 44 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~ 44 (505)
+.+|+||+-|-.. |--++.|+.+. .|..++.|||..
T Consensus 21 ~~kVlVa~SGGVD-Ssvla~la~~~---lG~~v~aV~vD~ 56 (307)
T PRK00919 21 DGKAIIALSGGVD-SSVAAVLAHRA---IGDRLTPVFVDT 56 (307)
T ss_pred CCCEEEEecCCHH-HHHHHHHHHHH---hCCeEEEEEEEC
Confidence 4799999999997 88777777663 267899999953
No 229
>PRK12342 hypothetical protein; Provisional
Probab=60.01 E-value=1.4e+02 Score=29.86 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=50.8
Q ss_pred ChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 010658 15 DLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGKV 94 (505)
Q Consensus 15 S~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~v 94 (505)
++. -.+||+.|+++- ..|.+|++|++=|+.. ....++.++..+ |.
T Consensus 34 Np~-D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a-------------------------------~~~~l~r~alam--Ga 78 (254)
T PRK12342 34 SQF-DLNAIEAASQLA-TDGDEIAALTVGGSLL-------------------------------QNSKVRKDVLSR--GP 78 (254)
T ss_pred Chh-hHHHHHHHHHHh-hcCCEEEEEEeCCChH-------------------------------hHHHHHHHHHHc--CC
Confidence 455 678999999987 6788999999833310 011223333333 22
Q ss_pred ccEEEEEec---CCCCh---HHHHHHHHHHcCCCEEEEccCC
Q 010658 95 KAEILKVEK---SDEPV---HKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 95 ~ve~~vve~---~~~d~---~~~Ive~a~~~~idlLVmGs~g 130 (505)
.- ..++.. .+.|+ +..|..++++.+.|+|+.|..+
T Consensus 79 D~-avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s 119 (254)
T PRK12342 79 HS-LYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS 119 (254)
T ss_pred CE-EEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 21 122221 13466 8999999999999999999764
No 230
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=59.96 E-value=1.5e+02 Score=27.59 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 350 DSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAK 391 (505)
Q Consensus 350 ~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 391 (505)
...+.+++.+++++++++.++..+...-..|+.+-..+...+
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL 64 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRL 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555544444444443
No 231
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.63 E-value=2.2e+02 Score=32.51 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 010658 345 IQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLS-TMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLH 423 (505)
Q Consensus 345 ~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~ 423 (505)
+.+.|.+-+..++.++.+.++.+.++..+..|...|...|... ..-....-+...-....+.++...+.+|+.++..-+
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rl 180 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999998888888887777665 111111122222223455677777778887776555
Q ss_pred HhHHHH
Q 010658 424 RRIEFC 429 (505)
Q Consensus 424 ~~~e~~ 429 (505)
+.+..+
T Consensus 181 ekv~~~ 186 (660)
T KOG4302|consen 181 EKVLEL 186 (660)
T ss_pred HHHHHH
Confidence 554443
No 232
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=59.61 E-value=8.1 Score=42.94 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.3
Q ss_pred cccccCCCcceEEEEEECC-cEEEEEEccCCC---Chhhhhc
Q 010658 467 FRLKCAGDWTNVYRGRLNH-ASVAIKTLNNGL---SEEDFQA 504 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L~g-~~VAVK~L~~~~---~~~eF~~ 504 (505)
.+||+|- ||.|--+.+.| ..||||+|+++. ...+|..
T Consensus 544 ekiGeGq-FGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~k 584 (807)
T KOG1094|consen 544 EKIGEGQ-FGEVHLCEVEGPLKVAVKILRPDATKNARNDFLK 584 (807)
T ss_pred hhhcCcc-cceeEEEEecCceEEEEeecCcccchhHHHHHHH
Confidence 5789999 99999999975 899999998632 4567754
No 233
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=59.56 E-value=1e+02 Score=29.57 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe--CCeEeeeecC
Q 010658 108 VHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC--GGKLVSLKGE 172 (505)
Q Consensus 108 ~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~--kgkl~~~r~a 172 (505)
.+..|.+++++.+.|+|++|++..+... + -+..-++ ..-.+|..+.|.-+. .|.++++|..
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~g-r-dlaprlA--arLga~lvsdv~~l~~~~~~~~~~r~~ 158 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDT-G-QVGPLLA--ELLGWPQITYVSKIEIEGGKVTVEREL 158 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCc-C-cHHHHHH--HHhCCCccceEEEEEEeCCEEEEEEEc
Confidence 4778999999999999999998743221 1 1222222 344556666666553 6777777754
No 234
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.36 E-value=2.1e+02 Score=29.24 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.6
Q ss_pred ccHHHH
Q 010658 451 YAAEDI 456 (505)
Q Consensus 451 ~s~~el 456 (505)
+|+.+|
T Consensus 280 Lt~Eel 285 (294)
T COG1340 280 LTTEEL 285 (294)
T ss_pred CCHHHH
Confidence 444444
No 235
>PHA03211 serine/threonine kinase US3; Provisional
Probab=58.73 E-value=9.2 Score=41.55 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=27.5
Q ss_pred hhccccccccccCCCcceEEEEEEC--CcEEEEEEc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRLN--HASVAIKTL 493 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L~--g~~VAVK~L 493 (505)
..+|.-...||.|+ ||.||+|... +..||||..
T Consensus 168 ~~gy~i~~~Lg~G~-~G~Vy~a~~~~~~~~vavK~~ 202 (461)
T PHA03211 168 GLGFAIHRALTPGS-EGCVFESSHPDYPQRVVVKAG 202 (461)
T ss_pred cCCeEEEEEEccCC-CeEEEEEEECCCCCEEEEecc
Confidence 44677778999999 9999999983 678999965
No 236
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.67 E-value=67 Score=31.34 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 345 IQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQ 385 (505)
Q Consensus 345 ~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 385 (505)
+++..+..+++.+.++.++++...+|...+.+..+|.+|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888888888888888777777776666544
No 237
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.94 E-value=87 Score=24.32 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 010658 338 DVASRMEIQRDLDSLKEQSCEVIR 361 (505)
Q Consensus 338 e~~~R~e~ee~l~~eke~~e~~~~ 361 (505)
|++-+--+.+.|.+.|.....+..
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~ 32 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFES 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443344444444444444443333
No 238
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.88 E-value=94 Score=24.68 Aligned_cols=50 Identities=26% Similarity=0.243 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010658 369 RLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQ 418 (505)
Q Consensus 369 ~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~ 418 (505)
+|.++..+...-+...............+|..+.....+++.+.+.|+++
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444445555555555555555555444
No 239
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=57.82 E-value=3.8 Score=46.95 Aligned_cols=34 Identities=32% Similarity=0.290 Sum_probs=27.0
Q ss_pred hccccccccccCCCcceEEEEEECCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L~g~~VAVK~L~ 494 (505)
.-|++..++|.|.+-+.||+|...|+.||||+|-
T Consensus 509 ~~~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll 542 (903)
T KOG1027|consen 509 LFFSPKEILGYGSNGTVVFRGVYEGREVAVKRLL 542 (903)
T ss_pred eeeccHHHcccCCCCcEEEEEeeCCceehHHHHh
Confidence 3467777888887224589999999999999984
No 240
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.22 E-value=43 Score=34.93 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 350 DSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIE 413 (505)
Q Consensus 350 ~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~ 413 (505)
....+++...+.++.++..+|..+..+......+.......+...+.+|..|..++.-+..+..
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 3333333344444444444444333333333333333444444555555555555544444443
No 241
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=56.76 E-value=82 Score=37.06 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=31.8
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
.+|.|..=|.+. -+.||.+|.+.+..++-+++++|..+.
T Consensus 631 ~~v~~~F~GG~D-DREALa~a~rma~~p~v~lTVirf~~~ 669 (832)
T PLN03159 631 HHVAVLFFGGPD-DREALAYAWRMSEHPGITLTVMRFIPG 669 (832)
T ss_pred eeEEEEecCCcc-hHHHHHHHHHHhcCCCeEEEEEEEEcc
Confidence 478888745454 688999999999988889999998765
No 242
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.74 E-value=3.2e+02 Score=30.49 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHcCCC
Q 010658 108 VHKLILDLVSRLTIT 122 (505)
Q Consensus 108 ~~~~Ive~a~~~~id 122 (505)
..+.|++|-.++|-+
T Consensus 75 c~~~I~~fL~engf~ 89 (581)
T KOG0995|consen 75 CIRQIYNFLVENGFS 89 (581)
T ss_pred HHHHHHHHHHHcCCC
Confidence 356677777776666
No 243
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=56.36 E-value=9.5 Score=42.11 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=27.6
Q ss_pred hccccccccccCCCcceEEEEEE-CCcEEEEEEccCC
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG 496 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L-~g~~VAVK~L~~~ 496 (505)
..|++ ..|+.+. .|.||+|+| +|..||||+.+++
T Consensus 126 ~eF~~-~PiAsAS-IaQVH~A~L~sG~~VAVKVqrPg 160 (517)
T COG0661 126 SEFEP-EPIASAS-IAQVHRAVLKSGEEVAVKVQRPG 160 (517)
T ss_pred HHcCC-Cchhhhh-HhhheeEEecCCCEEEEEecCCC
Confidence 34543 4778888 999999999 5999999999864
No 244
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=56.20 E-value=2.4e+02 Score=32.85 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.6
Q ss_pred hhhhHHH
Q 010658 324 CNSRADQ 330 (505)
Q Consensus 324 ~~~~~~~ 330 (505)
+-++++-
T Consensus 342 arrk~eg 348 (1265)
T KOG0976|consen 342 ARRKAEG 348 (1265)
T ss_pred HHHhhcc
Confidence 3333333
No 245
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=56.20 E-value=52 Score=35.84 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccC
Q 010658 84 LSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 84 L~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
|.....-+...++...+..| +|.+.|.+++++++|+.|+.-.-
T Consensus 57 L~~L~~~L~~~G~~L~v~~G---~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 57 LQELQQRYQQAGSQLLILQG---DPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHHHHCCCCeEEEEC---CHHHHHHHHHHHcCCCEEEEecc
Confidence 33344444456777777776 79999999999999999996543
No 246
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=56.05 E-value=1.2e+02 Score=29.70 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=54.4
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
|+++..-|-+. |-.||-||+.+ . ..++|+++++... ..+ +. ..+. . +++ +
T Consensus 2 k~~~l~SGGKD-S~~al~~a~~~-~---~v~~L~t~~~~~~-~s~---~~-H~~~----~---------------~~~-~ 51 (223)
T TIGR00290 2 KVAALISGGKD-SCLALYHALKE-H---EVISLVNIMPENE-ESY---MF-HGVN----A---------------HLT-D 51 (223)
T ss_pred cEEEEecCcHH-HHHHHHHHHHh-C---eeEEEEEEecCCC-Ccc---cc-cccC----H---------------HHH-H
Confidence 47788888887 99999999887 3 3567888876531 001 11 0111 0 111 1
Q ss_pred HHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCC
Q 010658 87 YLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
....|-++....+...+..++=-+.+.+...+.+++.||-|.-.
T Consensus 52 ~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 52 LQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred HHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 22223244432222333333456667777778899999999864
No 247
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.94 E-value=12 Score=42.13 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=30.5
Q ss_pred HhhccccccccccCCCcceEEEEEEC--CcEEEEEEccC
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRLN--HASVAIKTLNN 495 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L~--g~~VAVK~L~~ 495 (505)
..++|.--.++|.|. ||.||.+.+. +...|||.|..
T Consensus 366 ~l~~F~~l~vLGkGs-FGkV~lae~k~~~e~yAIK~LKK 403 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGS-FGKVLLAELKGTNEYYAIKVLKK 403 (694)
T ss_pred cccceEEEEEeccCc-CceEEEEEEcCCCcEEEEEEeec
Confidence 446788788999999 9999999994 57899999964
No 248
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.81 E-value=1.2e+02 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 010658 279 NMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCE 358 (505)
Q Consensus 279 ~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~ 358 (505)
+-+++..-+++..+-.++- -.+.|+++++++..|.+..++...++-. +.|-+.|+.-|+...++-+++.+
T Consensus 109 aKleakqerr~qRe~E~~e-REeRk~ke~~eE~erKkdEeR~~eEae~---------k~ee~~RkakEE~arkeheEylk 178 (299)
T KOG3054|consen 109 AKLEAKQERRAQREAEEAE-REERKRKEDYEEAERKKDEERLAEEAEL---------KEEEKERKAKEEEARKEHEEYLK 178 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhhhHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433444444322222 2257788888888655554443322222 22334455555555555555555
Q ss_pred HH
Q 010658 359 VI 360 (505)
Q Consensus 359 ~~ 360 (505)
||
T Consensus 179 mK 180 (299)
T KOG3054|consen 179 MK 180 (299)
T ss_pred HH
Confidence 55
No 249
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=55.46 E-value=90 Score=33.39 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccC
Q 010658 82 NLLSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 82 ~lL~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
+-|.+...-+.+.++...+..| ++.+.|.+++++++|+.|+.=.-
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G---~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSG---KPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeC---CHHHHHHHHHHHhCCCEEEEecc
Confidence 3344444445566777777776 79999999999999999998654
No 250
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=55.37 E-value=2.2e+02 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 359 VIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
++++...+..+|..+++....|..++......+..++..+.
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444433333333333333
No 251
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=55.23 E-value=96 Score=31.84 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=26.7
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
..+|+|++-|... |--.|..|.+.+...+..+.+|||-
T Consensus 27 f~~~vv~~SGGKD-S~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 27 FENPVMLYSIGKD-SSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCCEEEEecCCHH-HHHHHHHHHHhhcccCCCeeEEEEe
Confidence 4679999999887 8766666655544334467888983
No 252
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=54.98 E-value=1.1e+02 Score=31.43 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=25.0
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEee
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTY 44 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~ 44 (505)
+|+||+-|-.. |--++.++.+. .|..++.|||..
T Consensus 1 kVlVa~SGGVD-Ssvla~ll~~~---lG~~v~aV~vd~ 34 (295)
T cd01997 1 KVILALSGGVD-STVAAVLLHKA---IGDRLTCVFVDN 34 (295)
T ss_pred CEEEEEcCChH-HHHHHHHHHHH---hCCcEEEEEecC
Confidence 58999999997 87666665543 256799999943
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.94 E-value=2.2e+02 Score=28.08 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.2
Q ss_pred cceEEEEEE--CCcEEEEEEcc
Q 010658 475 WTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 475 ~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.=.||.|.+ +|..+-|..|+
T Consensus 167 ~i~~~~~~i~~dG~~~~V~~Lr 188 (251)
T PF11932_consen 167 TIEVYQGTITLDGEERQVDFLR 188 (251)
T ss_pred ceeEEEEEEeECCeEEEEEEEe
Confidence 446899998 79999988874
No 254
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=54.72 E-value=1.3e+02 Score=26.81 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=24.8
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
.|+|++-|-.. |-.++.|+.+... ..++++|+.
T Consensus 3 d~~v~lSGG~D-Ss~ll~l~~~~~~---~~v~~v~~~ 35 (154)
T cd01996 3 DCIIGVSGGKD-SSYALYLLKEKYG---LNPLAVTVD 35 (154)
T ss_pred CEEEECCCchh-HHHHHHHHHHHhC---CceEEEEeC
Confidence 58999999997 8888888766432 257778883
No 255
>PTZ00121 MAEBL; Provisional
Probab=54.68 E-value=5.3e+02 Score=32.38 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=14.2
Q ss_pred CCEEEE-EecCChHhHHHHHHHHH
Q 010658 5 EPKVYV-AVGNDLQDGYRTLDWTI 27 (505)
Q Consensus 5 ~~kIlV-AVDgS~~~S~~AL~WAl 27 (505)
++.|.| ..||+..+....++|--
T Consensus 675 GK~i~v~~l~~~~~d~~~n~~fLN 698 (2084)
T PTZ00121 675 GKAIIVENLEGEEEDKNFNLEFLN 698 (2084)
T ss_pred CceEEEecccccccchhhhHHHHH
Confidence 356666 47888654555666643
No 256
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.06 E-value=3.2e+02 Score=31.90 Aligned_cols=7 Identities=0% Similarity=0.059 Sum_probs=2.7
Q ss_pred HHHHHcC
Q 010658 114 DLVSRLT 120 (505)
Q Consensus 114 e~a~~~~ 120 (505)
.++...+
T Consensus 278 ~~a~~~~ 284 (771)
T TIGR01069 278 RYAKAVK 284 (771)
T ss_pred HHHHHCC
Confidence 3333333
No 257
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.39 E-value=2.7e+02 Score=29.00 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 010658 343 MEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVL 422 (505)
Q Consensus 343 ~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~ 422 (505)
..+.+.+..-..+.++++.+-+++++.|-.+.+-..-.-++.+..+..+..++++-..-..++..+.++..+...+-..+
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Q ss_pred HHhHHHHHhhcc
Q 010658 423 HRRIEFCKEKDA 434 (505)
Q Consensus 423 ~~~~e~~~~~~~ 434 (505)
.++..+-....+
T Consensus 168 nrELaE~layqq 179 (401)
T PF06785_consen 168 NRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHHHH
No 258
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.29 E-value=51 Score=35.88 Aligned_cols=25 Identities=4% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEES 366 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~ 366 (505)
.+|+|+.|+..|.+++.+.++.++.
T Consensus 78 asELEKqLaaLrqElq~~saq~~dl 102 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDD 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3444555565555555444444433
No 259
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=53.24 E-value=17 Score=31.40 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEeCCeEe
Q 010658 107 PVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLV 167 (505)
Q Consensus 107 d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~kgkl~ 167 (505)
.++...++.|.+.++..||+=+.+ |.++..+.+.-| .|||++|.....+
T Consensus 3 aia~aa~~~A~~~~ak~Ivv~T~s-----------G~ta~~isk~RP-~~pIiavt~~~~~ 51 (117)
T PF02887_consen 3 AIARAAVELAEDLNAKAIVVFTES-----------GRTARLISKYRP-KVPIIAVTPNESV 51 (117)
T ss_dssp HHHHHHHHHHHHHTESEEEEE-SS-----------SHHHHHHHHT-T-SSEEEEEESSHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC-----------chHHHHHHhhCC-CCeEEEEcCcHHH
Confidence 467889999999999999987764 234557888888 5999999976553
No 260
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.02 E-value=3.9e+02 Score=30.41 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.5
Q ss_pred eEEEEE
Q 010658 156 CELFII 161 (505)
Q Consensus 156 C~V~vV 161 (505)
|.|.++
T Consensus 85 ~~V~l~ 90 (650)
T TIGR03185 85 ASITLT 90 (650)
T ss_pred eEEEEE
Confidence 444443
No 261
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.59 E-value=3.3e+02 Score=29.38 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSS 372 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~ 372 (505)
|+-+|-...+ +++|+++.+++++..+|..
T Consensus 299 reg~e~e~~r--kelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 299 REGVENETSR--KELEQLRVALEKAEKELEA 327 (575)
T ss_pred hcchhHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 4445533333 5888888888888777753
No 262
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.97 E-value=4.9e+02 Score=31.16 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHH--hHHHHHHHHHHHHHHHHHH
Q 010658 282 VAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVA--SRMEIQRDLDSLKEQSCEV 359 (505)
Q Consensus 282 eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~--~R~e~ee~l~~eke~~e~~ 359 (505)
+-|.+.+|.+++++........+.+.-+-. +.|..+...+. .+..-..+....|+. .+-+..-.|..++.+++..
T Consensus 783 e~e~l~kLn~eI~~l~~kl~~~~~er~~~~--~rk~~le~~l~-~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~ 859 (1200)
T KOG0964|consen 783 ELERLSKLNKEINKLSVKLRALREERIDIE--TRKTALEANLN-TKLYKRVNELEQEIGDLNDSSRRSELELEKSELESE 859 (1200)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHH
Confidence 456688888888888776644444444422 23333322211 111111111111111 0111233455566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHhHHHHhHHHHHh
Q 010658 360 IRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIAR------AEIVKDIEELRRQRDVLHRRIEFCKE 431 (505)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~------~~~~~~~~~l~~~r~~~~~~~e~~~~ 431 (505)
..+++.++.+|..+++........ +.+....++++-.+- ..+..+++++.+.+..++..-++|..
T Consensus 860 ~~~~e~~~~el~~l~~~i~~~~a~-------~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~e 930 (1200)
T KOG0964|consen 860 EKRVEAAILELKTLQDSIDKKKAE-------IKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCE 930 (1200)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666555544444433 333333333332221 23336677787777777777666643
No 263
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=51.91 E-value=4.5e+02 Score=30.75 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~ 430 (505)
.++..|...+......+..+..+|.+....+.+..+.+..++.+|+..+.++-.++
T Consensus 664 ~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~mK 719 (775)
T PF10174_consen 664 KQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEMK 719 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777777777777778888888888888887776666665
No 264
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.89 E-value=4.5e+02 Score=30.75 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=3.5
Q ss_pred EEEEccC
Q 010658 123 KLVMGLS 129 (505)
Q Consensus 123 lLVmGs~ 129 (505)
+||.|..
T Consensus 330 ~iITGpN 336 (782)
T PRK00409 330 LVITGPN 336 (782)
T ss_pred EEEECCC
Confidence 4555553
No 265
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=51.83 E-value=1.7e+02 Score=30.85 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
..+|+|++-|-.. |--|+-|+.+ .|..|+.||+.
T Consensus 172 ~~kvlvllSGGiD-S~vaa~ll~k----rG~~V~av~~~ 205 (371)
T TIGR00342 172 QGKVLALLSGGID-SPVAAFMMMK----RGCRVVAVHFF 205 (371)
T ss_pred CCeEEEEecCCch-HHHHHHHHHH----cCCeEEEEEEe
Confidence 5799999999987 8777766534 37789999995
No 266
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=51.23 E-value=3.3e+02 Score=28.99 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAREM 299 (505)
Q Consensus 286 ~~~l~~~l~ea~~~ 299 (505)
.+-+|-+|..+..+
T Consensus 83 lr~~rtel~~a~~~ 96 (499)
T COG4372 83 LRALRTELGTAQGE 96 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 267
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.17 E-value=2.8e+02 Score=28.07 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010658 378 SELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 378 ~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
...+..+++....+.+...+|.
T Consensus 217 ~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 217 KQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555
No 268
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=51.02 E-value=1.3e+02 Score=29.95 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 348 DLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVI 403 (505)
Q Consensus 348 ~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~ 403 (505)
.|.....-|-++.--+|++...-..++.+..+|.++-.+.++++.=+.++++.-+.
T Consensus 31 QLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~ 86 (277)
T PF15030_consen 31 QLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQ 86 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHH
Confidence 35555555555666666655555556677777777777788887777777764333
No 269
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=50.67 E-value=4.8 Score=47.25 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 290 KSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNR 369 (505)
Q Consensus 290 ~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~ 369 (505)
|.-|.........+=.+++....+..|+....+++ |+.++|.-+-.|-+.|.++...+.+-...+.++..++++-...
T Consensus 716 k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~--ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~ 793 (859)
T PF01576_consen 716 KKALERQVKELQARLEEAEQSALKGGKKQIAKLEA--RIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKN 793 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 33333333333333344555555444544444444 8999999999999999999999999988899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Q 010658 370 LSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 370 l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~ 430 (505)
.....+...-|..++..+-+.+.+++............+..+++...-.-+.+-+.+..++
T Consensus 794 ~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr 854 (859)
T PF01576_consen 794 AERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAEERAEAAERELNKLR 854 (859)
T ss_dssp -------------------------------------SSSSHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887666666666677666655555556665554
No 270
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.28 E-value=1.6e+02 Score=25.00 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 381 SNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 381 ~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
+.++......++.++.++..-..+..+++.++.++
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333333444444333
No 271
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=49.96 E-value=10 Score=39.62 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=29.3
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
-++|..-++||.|+ ||.||...- .++..|.|.|+
T Consensus 24 ~~dF~~lkviGkG~-fGkV~~Vrk~dt~kiYAmKvl~ 59 (357)
T KOG0598|consen 24 PDDFEILKVIGKGS-FGKVFQVRKKDTGKIYAMKVLK 59 (357)
T ss_pred hhheeeeeeeeccC-CceEEEEEEcccCceeehhhhh
Confidence 35688889999999 999998876 37899999996
No 272
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=49.65 E-value=1.7e+02 Score=27.79 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=21.1
Q ss_pred HHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 321 ICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSN 382 (505)
Q Consensus 321 ~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~ 382 (505)
+...+.....++......-..=.+++..++.-+.++..+..++.+...-++.+.+....|.-
T Consensus 97 L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 97 LVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554433333333344444444555555555555555555544444444443
No 273
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.60 E-value=3.8e+02 Score=29.14 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=40.4
Q ss_pred hhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 326 SRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGH 393 (505)
Q Consensus 326 ~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e 393 (505)
..+++++.....=...++-+|..+.....++.+.-+++.+.++.=..+...+..+..++.+.+...++
T Consensus 361 ~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 361 TEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKE 428 (493)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44555444444444456666777777777777777777766655555666666666665554444333
No 274
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.47 E-value=2.7e+02 Score=32.47 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=4.1
Q ss_pred hhhHHHHH
Q 010658 279 NMSVAERT 286 (505)
Q Consensus 279 ~~~eae~~ 286 (505)
++..|++.
T Consensus 485 a~~iA~~~ 492 (771)
T TIGR01069 485 AFEIAQRY 492 (771)
T ss_pred HHHHHHHh
Confidence 55555544
No 275
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.08 E-value=1.2e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
++...|+.+++-.+..+.+|...+......+..+.+.+..|
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665544444444444443
No 276
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=49.06 E-value=6.2 Score=40.18 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.6
Q ss_pred cccccccccCCCcceEEEEE-E-CCcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGR-L-NHASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~-L-~g~~VAVK~L~ 494 (505)
|.-..+||.|. ||.|||.. + +|..||.|+++
T Consensus 21 y~Il~~IG~Gs-Fg~vykv~~~~~g~l~a~K~i~ 53 (375)
T KOG0591|consen 21 YQILKKIGRGS-FGEVYKVQCLLDGKLVALKKIQ 53 (375)
T ss_pred HHHHHHHcCCc-chheEEeeeccCcchhhhhhcc
Confidence 44445899999 99999975 3 79999999986
No 277
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.71 E-value=2.5e+02 Score=26.83 Aligned_cols=8 Identities=13% Similarity=-0.159 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010658 390 AKGHAEAQ 397 (505)
Q Consensus 390 ~~~e~e~~ 397 (505)
.+-+++.+
T Consensus 139 ki~el~~~ 146 (190)
T PF05266_consen 139 KILELQRQ 146 (190)
T ss_pred HHHHHHHH
Confidence 33333333
No 278
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=48.40 E-value=17 Score=40.51 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=25.0
Q ss_pred ccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 466 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
...||.|. ||.|-|+.- .|..||||++.+
T Consensus 191 ~e~LGkGt-FGQVvk~~d~~T~e~VAIKIiKN 221 (586)
T KOG0667|consen 191 LEVLGKGS-FGQVVKAYDHKTGEIVAIKIIKN 221 (586)
T ss_pred EEEecccc-cceeEEEEecCCCcEEEEEeecc
Confidence 45899999 999999986 378999999974
No 279
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.32 E-value=3.7e+02 Score=29.22 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 348 DLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 348 ~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
.|...|+.++.+..+.+..+..+..+......++++++..+-.++++..++.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555544444444444
No 280
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.29 E-value=1.6e+02 Score=34.32 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 351 SLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIAR 405 (505)
Q Consensus 351 ~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~ 405 (505)
.-+++++.++.+.+++...|.+..++...+..|+++++..+.++..+|..+....
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~ 647 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN 647 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888889999999999999999999988888665543
No 281
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.78 E-value=3.6e+02 Score=28.44 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 341 SRMEIQRDLDSLKEQSCEVIRDVEESKNRLSS----LIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELR 416 (505)
Q Consensus 341 ~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~ 416 (505)
+++.++..+...+..+.++-.++....+++.+ +..|...+-.+.+.....++++..+...+-.-..++.+++.++-
T Consensus 228 ~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 228 HKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666777777777777766665555555543 44555555555555555555555555555444445554444444
Q ss_pred HhH
Q 010658 417 RQR 419 (505)
Q Consensus 417 ~~r 419 (505)
.+-
T Consensus 308 eeL 310 (359)
T PF10498_consen 308 EEL 310 (359)
T ss_pred HHH
Confidence 333
No 282
>PRK00074 guaA GMP synthase; Reviewed
Probab=47.63 E-value=1.2e+02 Score=33.54 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=26.7
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
.+++|+||+-|-.. |--++..+.+.+ |..++.|||.
T Consensus 214 ~~~~vlva~SGGvD-S~vll~ll~~~l---g~~v~av~vd 249 (511)
T PRK00074 214 GDKKVILGLSGGVD-SSVAAVLLHKAI---GDQLTCVFVD 249 (511)
T ss_pred CCCcEEEEeCCCcc-HHHHHHHHHHHh---CCceEEEEEe
Confidence 35789999999987 876665554433 5679999994
No 283
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=47.51 E-value=13 Score=42.29 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=27.0
Q ss_pred ccccCCCcceEEEEEEC---C--cEEEEEEccCCC---Chhhhhc
Q 010658 468 RLKCAGDWTNVYRGRLN---H--ASVAIKTLNNGL---SEEDFQA 504 (505)
Q Consensus 468 ~iG~gg~~G~VYkg~L~---g--~~VAVK~L~~~~---~~~eF~~ 504 (505)
+||+|. ||.|.+|... | -.||||.|..+. -...|..
T Consensus 117 ~LG~Gs-FgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflr 160 (1039)
T KOG0199|consen 117 LLGEGS-FGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLR 160 (1039)
T ss_pred HhcCcc-eeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHH
Confidence 789999 9999999882 4 378999997532 3456654
No 284
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=47.11 E-value=1.7e+02 Score=26.58 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=64.5
Q ss_pred hHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 010658 16 LQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGKVK 95 (505)
Q Consensus 16 ~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~v~ 95 (505)
+. +..+|..|.......|..|++|.+- +.. . ..+.|..+ +...+
T Consensus 15 ~~-~~e~l~~A~~La~~~g~~v~av~~G-~~~---------------~----------------~~~~l~~~---l~~~G 58 (164)
T PF01012_consen 15 PV-SLEALEAARRLAEALGGEVTAVVLG-PAE---------------E----------------AAEALRKA---LAKYG 58 (164)
T ss_dssp HH-HHHHHHHHHHHHHCTTSEEEEEEEE-TCC---------------C----------------HHHHHHHH---HHSTT
T ss_pred HH-HHHHHHHHHHHHhhcCCeEEEEEEe-cch---------------h----------------hHHHHhhh---hhhcC
Confidence 56 8899999999998888899888874 210 0 01112111 22345
Q ss_pred cEEEEEe-cCC------CChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEE--EeCCeE
Q 010658 96 AEILKVE-KSD------EPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFI--ICGGKL 166 (505)
Q Consensus 96 ve~~vve-~~~------~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~v--V~kgkl 166 (505)
++.++.. .+. ...++.|.+++++.+.|+|++|++..+.- +..-++ ..-.+|....|.= +..|.+
T Consensus 59 ~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~-----la~~lA--~~L~~~~v~~v~~l~~~~~~~ 131 (164)
T PF01012_consen 59 ADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGRD-----LAPRLA--ARLGAPLVTDVTDLEVEDGGL 131 (164)
T ss_dssp ESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHH-----HHHHHH--HHHT-EEEEEEEEEEEETTEE
T ss_pred CcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCc-----HHHHHH--HHhCCCccceEEEEEECCCeE
Confidence 5544333 211 12577999999999999999999753211 111122 2223343333333 345677
Q ss_pred eeeecCC
Q 010658 167 VSLKGEN 173 (505)
Q Consensus 167 ~~~r~a~ 173 (505)
.++|..-
T Consensus 132 ~~~r~~~ 138 (164)
T PF01012_consen 132 VVTRPVY 138 (164)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 7777543
No 285
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=46.73 E-value=8.5 Score=38.93 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=29.7
Q ss_pred cccccHHHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 448 FREYAAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 448 ~~~~s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
...|+-..|+. --.||.|. ||+|+|-.. .|...|||++..
T Consensus 58 ~~~F~~~~Lqd-------lg~iG~G~-fG~V~KM~hk~sg~~mAVKrIr~ 99 (361)
T KOG1006|consen 58 LHTFTSDNLQD-------LGEIGNGA-FGTVNKMLHKPSGKLMAVKRIRS 99 (361)
T ss_pred ccccccchHHH-------HHHhcCCc-chhhhhhhcCccCcEEEEEEeee
Confidence 34565555443 23689999 999999877 489999999974
No 286
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=46.40 E-value=2.7e+02 Score=26.60 Aligned_cols=15 Identities=47% Similarity=0.468 Sum_probs=6.0
Q ss_pred HHHhHhHHHHhHHHH
Q 010658 415 LRRQRDVLHRRIEFC 429 (505)
Q Consensus 415 l~~~r~~~~~~~e~~ 429 (505)
+++.....++.++.-
T Consensus 163 ~~~e~a~~ir~~eee 177 (201)
T PF12072_consen 163 ARREAAALIRRIEEE 177 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444333
No 287
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=46.35 E-value=1.4e+02 Score=26.51 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=22.6
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEE
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHV 42 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV 42 (505)
+|+|++.|-.. |-..|..+.+.... ...+.++|+
T Consensus 1 ~i~v~~SGGkD-S~~ll~l~~~~~~~-~~~~~~v~~ 34 (173)
T cd01713 1 NVVVSFSGGKD-STVLLHLALKALPE-LKPVPVIFL 34 (173)
T ss_pred CeEEEecCChH-HHHHHHHHHHhccc-ccCceEEEe
Confidence 48999999987 87555555443322 135788888
No 288
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.24 E-value=2.1e+02 Score=31.61 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=9.8
Q ss_pred cccccCCCcceEEEEEEC
Q 010658 467 FRLKCAGDWTNVYRGRLN 484 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L~ 484 (505)
..+..-+ |-..|...|+
T Consensus 200 Y~v~~a~-W~P~Ydlrl~ 216 (525)
T TIGR02231 200 YQVGNAS-WTPSYDARLD 216 (525)
T ss_pred EEeCCCc-EeeeeEEEec
Confidence 3444444 6677777773
No 289
>PHA03207 serine/threonine kinase US3; Provisional
Probab=46.20 E-value=20 Score=37.50 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=26.4
Q ss_pred ccccccccccCCCcceEEEEEEC----CcEEEEEEccC
Q 010658 462 DFSERFRLKCAGDWTNVYRGRLN----HASVAIKTLNN 495 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L~----g~~VAVK~L~~ 495 (505)
.|.-...||.|+ ||.||++... +..|+||.+..
T Consensus 93 ~y~i~~~Lg~G~-~g~Vy~~~~~~~~~~~~v~vK~~~~ 129 (392)
T PHA03207 93 QYNILSSLTPGS-EGEVFVCTKHGDEQRKKVIVKAVTG 129 (392)
T ss_pred ceEEEEeecCCC-CeEEEEEEEcCCccceeEEEEeccc
Confidence 466667899999 9999999762 46799998853
No 290
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=45.61 E-value=4.6e+02 Score=29.04 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010658 282 VAERTEFMKSKINEAREMI 300 (505)
Q Consensus 282 eae~~~~l~~~l~ea~~~~ 300 (505)
..++++.|..+|..+.+..
T Consensus 170 ~~~kve~L~~Ei~~lke~l 188 (522)
T PF05701_consen 170 NEEKVEELSKEIIALKESL 188 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466777777765555554
No 291
>PRK02119 hypothetical protein; Provisional
Probab=45.54 E-value=1.1e+02 Score=24.50 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 374 IELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
.++...|+.+++--+..+.+|...+.....++..+.+++..|
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666665554444444444333
No 292
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.50 E-value=21 Score=37.58 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.0
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
...+.-...||.|. ||.||.|.- .|..||||.++.
T Consensus 16 ~g~y~~~~~lG~Gs-fgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 16 IGKYELGRTLGSGS-FGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred cCceeeeeeecCCC-CeeEEEeeeccCCCeEEEEEech
Confidence 44555567899999 999999976 589999997653
No 293
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.42 E-value=1.3e+02 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 391 KGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 391 ~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
+.+++++|.++......++.+.+.+
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333333333333
No 294
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.39 E-value=3.4e+02 Score=27.42 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010658 369 RLSSLIELQSELSNKLQ 385 (505)
Q Consensus 369 ~l~~~~~~~~~l~~~~~ 385 (505)
+|+++..+..++.+++.
T Consensus 53 ei~~L~~qi~~~~~k~~ 69 (265)
T COG3883 53 EIESLDNQIEEIQSKID 69 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 295
>PRK00736 hypothetical protein; Provisional
Probab=45.30 E-value=1.3e+02 Score=23.81 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
++...|+.+++-.+..+.+|...+.....++..+.+++..|
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777776555555555444444
No 296
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=45.25 E-value=4e+02 Score=28.27 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHH---HHHHHH
Q 010658 274 EQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRME---IQRDLD 350 (505)
Q Consensus 274 ~~~~~~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e---~ee~l~ 350 (505)
..+++.-.|-...++=+.++.+.. .-.+++.+.+.+-+.+..+..-+ .|++..+-+.-+-+.+||| ++..|.
T Consensus 292 ~~I~~VarENs~LqrQKle~e~~l----~a~qeakek~~KEAqareaklqa-ec~rQ~qlaLEEKaaLrkerd~L~keLe 366 (442)
T PF06637_consen 292 AGIERVARENSDLQRQKLEAEQGL----QASQEAKEKAGKEAQAREAKLQA-ECARQTQLALEEKAALRKERDSLAKELE 366 (442)
T ss_pred hhHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010658 351 SLKEQSCEVIRDVEESKNRLS 371 (505)
Q Consensus 351 ~eke~~e~~~~~~~~~~~~l~ 371 (505)
..|.++++++.+++....-|.
T Consensus 367 ekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 367 EKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHhhhhHHH
No 297
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.98 E-value=74 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQL 386 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 386 (505)
|+...+++.....++++...+|..+..+...|..+..+
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333
No 298
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.91 E-value=2e+02 Score=24.65 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 010658 407 EIVKDIEELRRQ 418 (505)
Q Consensus 407 ~~~~~~~~l~~~ 418 (505)
.+..+++.+.++
T Consensus 83 ~l~~~l~~v~~~ 94 (106)
T PF10805_consen 83 ELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 299
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.89 E-value=1.7e+02 Score=23.79 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSN 382 (505)
Q Consensus 340 ~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~ 382 (505)
++=+++...|....+|++++..-+.....+|...-+...-|+.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888888888777777777655444433333
No 300
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=44.86 E-value=9.7 Score=40.41 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHhhccccccccccCCCcceEEEEEEC-----CcEEEEEEccC
Q 010658 457 RLATEDFSERFRLKCAGDWTNVYRGRLN-----HASVAIKTLNN 495 (505)
Q Consensus 457 ~~AT~~Fs~~~~iG~gg~~G~VYkg~L~-----g~~VAVK~L~~ 495 (505)
....+.|...++||.|. |++||++.+. ...||+|.+..
T Consensus 32 p~~~~~~~~v~kigeGs-Fssv~~a~~~~~~~~~~~valk~i~~ 74 (418)
T KOG1167|consen 32 PFISNAYKVVNKIGEGS-FSSVYKATDIEQDTKRRYVALKAIYR 74 (418)
T ss_pred hhhhhhhhhhccccccc-hhhhhhhhHhhhccccceEeeeeccc
Confidence 34456678889999999 9999999982 36899999863
No 301
>PRK05370 argininosuccinate synthase; Validated
Probab=44.80 E-value=1.9e+02 Score=31.42 Aligned_cols=27 Identities=4% Similarity=0.014 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHcCCCEEEEccCCCCCC
Q 010658 108 VHKLILDLVSRLTITKLVMGLSFMIPS 134 (505)
Q Consensus 108 ~~~~Ive~a~~~~idlLVmGs~g~~~~ 134 (505)
+++.|++.|.+.||+.|-=|++|++.-
T Consensus 110 ia~~lv~~A~~~ga~aIAHG~TGKGND 136 (447)
T PRK05370 110 TGTMLVAAMKEDGVNIWGDGSTYKGND 136 (447)
T ss_pred HHHHHHHHHHHhCCcEEEEcCCCCCCc
Confidence 699999999999999999999998765
No 302
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.55 E-value=3.1e+02 Score=30.75 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 010658 109 HKLILDLVSR 118 (505)
Q Consensus 109 ~~~Ive~a~~ 118 (505)
...|..++.+
T Consensus 30 K~~ie~~~se 39 (555)
T TIGR03545 30 KKAIERSLEK 39 (555)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 303
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=43.09 E-value=32 Score=36.03 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=23.7
Q ss_pred cccccCCCcceEEEEEEC--CcEEEEEEcc
Q 010658 467 FRLKCAGDWTNVYRGRLN--HASVAIKTLN 494 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L~--g~~VAVK~L~ 494 (505)
..||.|. .|+|||+... |..+|.|.++
T Consensus 85 ~~lG~G~-gG~V~kv~Hk~t~~i~AlK~I~ 113 (364)
T KOG0581|consen 85 GVLGSGN-GGTVYKVRHKPTGKIYALKVIL 113 (364)
T ss_pred hhcccCC-CcEEEEEEEcCCCeEEEEEeec
Confidence 4899999 8999999983 7899999994
No 304
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=42.91 E-value=20 Score=30.62 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHcCCCEEEEccC
Q 010658 108 VHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 108 ~~~~Ive~a~~~~idlLVmGs~ 129 (505)
=.+.|++++.+++||++|+|.-
T Consensus 50 d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp -HHHHHHHHHHTTESEEEESSH
T ss_pred CHHHHHHHHHHcCCCEEEECCh
Confidence 3678999999999999999973
No 305
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.75 E-value=6.8e+02 Score=30.19 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 010658 77 QGKTDNLLSKY 87 (505)
Q Consensus 77 ~~~~~~lL~~~ 87 (505)
....+++|.-|
T Consensus 118 ~p~i~eVl~Gy 128 (1041)
T KOG0243|consen 118 SPIIKEVLEGY 128 (1041)
T ss_pred HHHHHHHhccC
Confidence 33333444333
No 306
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=42.61 E-value=4.2e+02 Score=27.75 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCEVIRDVEESKNRLSS 372 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~ 372 (505)
-+..++.++.|++.=.+..-++++..++|..
T Consensus 222 ~~k~eee~aaERerglqteaqvek~i~Efdi 252 (561)
T KOG1103|consen 222 TKKGEEEAAAERERGLQTEAQVEKLIEEFDI 252 (561)
T ss_pred cCCChHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 3445677777777655555555555555543
No 307
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=42.52 E-value=1.9e+02 Score=30.87 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=25.6
Q ss_pred EEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 8 VYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 8 IlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
|+||+.|-.. |--++.|+.+.. +..|+.+|+.
T Consensus 1 Vvva~SGGlD-Ssvll~~l~e~~---~~eV~av~~d 32 (385)
T cd01999 1 VVLAYSGGLD-TSVILKWLKEKG---GYEVIAVTAD 32 (385)
T ss_pred CEEEecCCHH-HHHHHHHHHHhC---CCeEEEEEEE
Confidence 6899999987 888999987643 3479999994
No 308
>PRK08349 hypothetical protein; Validated
Probab=42.22 E-value=3e+02 Score=25.93 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=24.9
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
.+++|++-|-.. |--|+-|+.. .|..|++||+.
T Consensus 1 ~~~vvllSGG~D-S~v~~~~l~~----~g~~v~av~~d 33 (198)
T PRK08349 1 MKAVALLSSGID-SPVAIYLMLR----RGVEVYPVHFR 33 (198)
T ss_pred CcEEEEccCChh-HHHHHHHHHH----cCCeEEEEEEe
Confidence 368999999987 8767654433 47789999994
No 309
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=42.14 E-value=23 Score=36.56 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.++.-...||.|. ||+||.+.. +|...|||...
T Consensus 17 ~~~~~~~~lG~Gs-~G~V~l~~~~~~g~~~AvK~v~ 51 (313)
T KOG0198|consen 17 SNWSKGKLLGRGS-FGSVYLATNKKTGELMAVKSVE 51 (313)
T ss_pred chhhhhccccCcc-ceEEEEEEecCCCcceeeeeee
Confidence 3455567899999 999999998 37899999885
No 310
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.82 E-value=2.6e+02 Score=25.15 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 352 LKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKD 411 (505)
Q Consensus 352 eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~ 411 (505)
....+++++.++++...++..+..+...+..++...........+++.+....++.....
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555666666666666666666666555554444333
No 311
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=41.72 E-value=2.5e+02 Score=27.66 Aligned_cols=33 Identities=6% Similarity=0.030 Sum_probs=26.7
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
++|+|+.-|-.. |--++.||.+. +..|+.|++.
T Consensus 2 ~kvvVl~SGG~D-St~~l~~a~~~----~~~v~alt~d 34 (231)
T PRK11106 2 KRAVVVFSGGQD-STTCLIQALQQ----YDEVHCVTFD 34 (231)
T ss_pred CcEEEEeeCcHH-HHHHHHHHHhc----CCeEEEEEEE
Confidence 579999999987 88899999653 4578889984
No 312
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=41.63 E-value=1.9e+02 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 341 SRMEIQRDLDSLKEQSCEVI-------RDVEESKNRLSSLIELQSELSNKL 384 (505)
Q Consensus 341 ~R~e~ee~l~~eke~~e~~~-------~~~~~~~~~l~~~~~~~~~l~~~~ 384 (505)
-|+|+|..|.-..+++..+. ..+..+.+-|..+.+|...|+..+
T Consensus 133 vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677887776666666553 234445555555555555555543
No 313
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.49 E-value=2.2e+02 Score=31.83 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010658 393 HAEAQLE 399 (505)
Q Consensus 393 e~e~~l~ 399 (505)
.|+-.++
T Consensus 132 ~Lk~~ie 138 (907)
T KOG2264|consen 132 ALKGEIE 138 (907)
T ss_pred HHHhHHH
Confidence 3333333
No 314
>PF15556 Zwint: ZW10 interactor
Probab=41.16 E-value=3.4e+02 Score=26.27 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHH-HHH
Q 010658 270 PNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEI-QRD 348 (505)
Q Consensus 270 ~~~~~~~~~~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~-ee~ 348 (505)
+.+-.-+.+++.--+...+=+-+|++|++-+..|++.+.+....-+| .|.+.--..--.-.|- .-|++.|.-- .+.
T Consensus 80 EaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQk-qwqlqQeK~LQ~Lae~--sAEvrerq~~~qqe 156 (252)
T PF15556_consen 80 EAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQK-QWQLQQEKHLQHLAEV--SAEVRERQTGTQQE 156 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRLSSLIELQSELS 381 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~ 381 (505)
|..-.++++.++.+...-..+|+.-+.-+..|+
T Consensus 157 Le~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~ 189 (252)
T PF15556_consen 157 LERLYQELGTLKQQAGQEQDKLQRHQTFLQLLY 189 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 315
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=41.05 E-value=20 Score=37.49 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=27.4
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
-+|.-..+||+|. ||..+-|.- .|.+||||.=.
T Consensus 28 ~hyrVGkKIGeGs-FG~lf~G~Nl~nne~VAIKfEP 62 (449)
T KOG1165|consen 28 PHYRVGKKIGEGS-FGVLFLGKNLYNNEPVAIKFEP 62 (449)
T ss_pred ccceeccccccCc-ceeeecccccccCceEEEEecc
Confidence 3577778999999 999999973 79999999653
No 316
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.80 E-value=1.9e+02 Score=29.00 Aligned_cols=80 Identities=6% Similarity=-0.010 Sum_probs=50.0
Q ss_pred ChHhHHHHHHHHHHhhhcCC-CeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010658 15 DLQDGYRTLDWTIRKWKAQS-ISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGK 93 (505)
Q Consensus 15 S~~~S~~AL~WAl~~~~~~g-~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~ 93 (505)
++. -.+||+.|+++--..+ .+|++|+|=|+.. .....|.++..+
T Consensus 35 N~~-D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a-------------------------------~~~~~lr~aLAm--- 79 (256)
T PRK03359 35 SQY-DLNAIEAACQLKQQAAEAQVTALSVGGKAL-------------------------------TNAKGRKDVLSR--- 79 (256)
T ss_pred Chh-hHHHHHHHHHHhhhcCCCEEEEEEECCcch-------------------------------hhHHHHHHHHHc---
Confidence 455 6789999998876544 7899999843310 011334444433
Q ss_pred CccEE-EEEecC---CCC---hHHHHHHHHHHcCCCEEEEccCC
Q 010658 94 VKAEI-LKVEKS---DEP---VHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 94 v~ve~-~vve~~---~~d---~~~~Ive~a~~~~idlLVmGs~g 130 (505)
++.- +++..+ +.| .+..|..++++.+.|+|+.|..+
T Consensus 80 -GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s 122 (256)
T PRK03359 80 -GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGS 122 (256)
T ss_pred -CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 2322 222210 123 48889999999999999999864
No 317
>PRK00295 hypothetical protein; Provisional
Probab=40.63 E-value=1.6e+02 Score=23.14 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
++...|+.+++-.+..+.+|.+.+.....++..+.+++..|
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666665555554444444444
No 318
>PRK12705 hypothetical protein; Provisional
Probab=40.62 E-value=5.5e+02 Score=28.48 Aligned_cols=6 Identities=0% Similarity=-0.335 Sum_probs=2.8
Q ss_pred cccccC
Q 010658 467 FRLKCA 472 (505)
Q Consensus 467 ~~iG~g 472 (505)
.+||.-
T Consensus 212 riIGre 217 (508)
T PRK12705 212 RIIGRE 217 (508)
T ss_pred cccCcc
Confidence 455543
No 319
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=40.54 E-value=27 Score=34.47 Aligned_cols=36 Identities=8% Similarity=-0.070 Sum_probs=29.9
Q ss_pred HhhccccccccccCCCcceEEEEEECCcEEEEEEccC
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRLNHASVAIKTLNN 495 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L~g~~VAVK~L~~ 495 (505)
..+.|...+++|.|| ||.||....++..+|||.+.+
T Consensus 29 l~~~y~~~~~l~~~~-f~~v~l~~~~~~~~iiKvf~~ 64 (232)
T PRK10359 29 LSYNIKTIKVFRNID-DTKVSLIDTDYGKYILKVFAP 64 (232)
T ss_pred hhCceEEEEEecCCC-ceEEEEEecCCCcEEEEEech
Confidence 356788889999999 999998655677899999974
No 320
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.38 E-value=99 Score=33.73 Aligned_cols=7 Identities=0% Similarity=0.259 Sum_probs=3.1
Q ss_pred EEEEEEc
Q 010658 487 SVAIKTL 493 (505)
Q Consensus 487 ~VAVK~L 493 (505)
+|.++.+
T Consensus 242 Pv~lRi~ 248 (475)
T PRK13729 242 PMQLRIT 248 (475)
T ss_pred cEEEEEc
Confidence 4444443
No 321
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.95 E-value=5.8e+02 Score=28.54 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=20.4
Q ss_pred hHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 327 RADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLS 371 (505)
Q Consensus 327 ~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~ 371 (505)
+...+=....+|+.-|..+++.+..-...++.++.+...+..++.
T Consensus 286 ~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~ 330 (560)
T PF06160_consen 286 RIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELE 330 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443444455555555555444444444444444444433333
No 322
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=39.84 E-value=27 Score=35.62 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=25.2
Q ss_pred ccccccccccCCCcceEEEEEECC---cEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRLNH---ASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L~g---~~VAVK~L~ 494 (505)
.|.-..+||+|+ ||.||.+.-.. ..+|+|.-.
T Consensus 19 ~~~i~~~iG~G~-fG~V~~v~~~~~~~~~~a~K~e~ 53 (322)
T KOG1164|consen 19 RYKLGKKIGEGG-FGAVYLVSDKSEKNKEYAKKLEK 53 (322)
T ss_pred ceEEeeeccccC-CceEEEEEecCCCCeeEEEEEEE
Confidence 677778999999 99999998632 367777664
No 323
>PRK04325 hypothetical protein; Provisional
Probab=39.83 E-value=1.9e+02 Score=23.18 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
++..+|+.+++--+..+.+|.+.+.....++..+..++..|
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777766555554444444333
No 324
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=39.76 E-value=87 Score=33.62 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCEEEEcc
Q 010658 109 HKLILDLVSRLTITKLVMGL 128 (505)
Q Consensus 109 ~~~Ive~a~~~~idlLVmGs 128 (505)
.+.|+++|+++++|+.|+|.
T Consensus 52 ~~~lv~fA~~~~idl~vVGP 71 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGP 71 (428)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 56788888888888888886
No 325
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=39.63 E-value=2e+02 Score=29.75 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 359 VIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIAR---AEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~---~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
+..++|-++..| .+++.|+.+|.+.-.++-.++....--+ .--.+++-+--+||+.++.++..|
T Consensus 145 l~YqVDtLKD~L-------eE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~Gl~ 211 (405)
T KOG2010|consen 145 LIYQVDTLKDVL-------EEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEHGLV 211 (405)
T ss_pred eeeeHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeE
Confidence 345566555555 4555555555555555544444322111 112223333346677666665444
No 326
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=39.60 E-value=6.9e+02 Score=29.31 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAREMI 300 (505)
Q Consensus 286 ~~~l~~~l~ea~~~~ 300 (505)
++.||.+|.+...++
T Consensus 345 ve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 345 VEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666665555
No 327
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=39.50 E-value=2.5e+02 Score=32.70 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 344 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQ 397 (505)
Q Consensus 344 e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~ 397 (505)
++.++|++.+++-|+-+++.++-..+.....+++.+.+.+.++..++.++.+.+
T Consensus 218 ~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekeke 271 (1064)
T KOG1144|consen 218 AMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKE 271 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777666666666666777777777666666655544
No 328
>COG1422 Predicted membrane protein [Function unknown]
Probab=39.49 E-value=1.1e+02 Score=29.46 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=19.6
Q ss_pred hhHhhhhhhhhHH-HHHHHHHHHHHHHHHHH
Q 010658 271 NAAEQIDSNMSVA-ERTEFMKSKINEAREMI 300 (505)
Q Consensus 271 ~~~~~~~~~~~ea-e~~~~l~~~l~ea~~~~ 300 (505)
++|..+-+....+ |++++++++.+|.+++.
T Consensus 58 gl~~~i~~~~liD~ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 58 GLYITILQKLLIDQEKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 5666666655544 88887777777666544
No 329
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.43 E-value=8.3e+02 Score=30.25 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=8.9
Q ss_pred HHHHHHhHhHHHHhHHHHH
Q 010658 412 IEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 412 ~~~l~~~r~~~~~~~e~~~ 430 (505)
...|+.++.+...+++.++
T Consensus 270 ~~~l~~e~~~l~~~~~~l~ 288 (1294)
T KOG0962|consen 270 VKLLDSEHKNLKKQISRLR 288 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455554443
No 330
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=39.31 E-value=30 Score=36.74 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=26.0
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
|.-...||.|. ||.||++.- .|..+|+|.+.
T Consensus 37 Y~l~~~lG~G~-Fg~v~~~~~~~tg~~~A~K~i~ 69 (382)
T KOG0032|consen 37 YELGRELGRGQ-FGVVYLCREKSTGKEVACKVIP 69 (382)
T ss_pred EEehhhhCCCC-ceEEEEEEecCCCceeEEEEee
Confidence 33346899999 999999988 48899999996
No 331
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.07 E-value=10 Score=43.65 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010658 280 MSVAERTEFMKSKINEAREM 299 (505)
Q Consensus 280 ~~eae~~~~l~~~l~ea~~~ 299 (505)
...|+..+.||++|......
T Consensus 287 ~~~A~~a~~LrDElD~lR~~ 306 (713)
T PF05622_consen 287 QAEAREARALRDELDELREK 306 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 34555566666666554433
No 332
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=38.97 E-value=30 Score=37.03 Aligned_cols=28 Identities=25% Similarity=0.153 Sum_probs=24.7
Q ss_pred ccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 466 RFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
...+|.|+ ||.|-.|.= .|..||||.++
T Consensus 177 ~~~LGsGa-fg~Vkla~e~~tgk~vAiKIi~ 206 (475)
T KOG0615|consen 177 SKTLGSGA-FGLVKLAYEKKTGKQVAIKIIN 206 (475)
T ss_pred eeeecCCc-eeEEEEEEEcccCcEEEeeeee
Confidence 56889999 999998876 58999999997
No 333
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.80 E-value=4.6e+02 Score=27.06 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 319 WAICLCNSRADQLESLTKEDVASRMEIQ---RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTM 389 (505)
Q Consensus 319 ~~~~~~~~~~~~~e~~~~~e~~~R~e~e---e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 389 (505)
+...+-+.|++.+-.+..+=+..-+|+. +...+..+++-.+..++-+.-.+++.......+|..++..+..
T Consensus 196 kEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 196 KEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444556677777555444333344432 3444555555556666666666666666666666655554443
No 334
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=38.64 E-value=2.7e+02 Score=26.92 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=21.5
Q ss_pred EEecCChHhHHHHHHHHHHhhhcCCCeE-EEEEEeeC
Q 010658 10 VAVGNDLQDGYRTLDWTIRKWKAQSISI-VILHVTYN 45 (505)
Q Consensus 10 VAVDgS~~~S~~AL~WAl~~~~~~g~~I-vllHV~~~ 45 (505)
|+.-|-.. |-.|+.||.+ .|..| .++++.++
T Consensus 2 vl~SGGkD-S~~al~~a~~----~G~~v~~l~~~~~~ 33 (218)
T TIGR03679 2 ALYSGGKD-SNYALYKALE----EGHEVRCLITVVPE 33 (218)
T ss_pred eeecCcHH-HHHHHHHHHH----cCCEEEEEEEeccC
Confidence 56667776 8888888877 35566 47787644
No 335
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=38.42 E-value=3.9e+02 Score=26.14 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=53.3
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
+|+|..-|-+. |-.|+-||++. .+.++|+++.+... . ......+ .. +++ +
T Consensus 2 kv~vl~SGGKD-S~lAl~~~~~~----~~V~~L~~~~~~~~--~---s~~~h~~----~~---------------~~~-~ 51 (222)
T TIGR00289 2 KVAVLYSGGKD-SILALYKALEE----HEVISLVGVFSENE--E---SYMFHSP----NL---------------HLT-D 51 (222)
T ss_pred eEEEEecCcHH-HHHHHHHHHHc----CeeEEEEEEcCCCC--C---ccccccC----CH---------------HHH-H
Confidence 58888899887 99999999885 24466677654421 0 0000000 10 111 1
Q ss_pred HHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCC
Q 010658 87 YLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
....|-++........+..++--+.+.+...+.+++.||-|.-.
T Consensus 52 ~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 52 LVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred HHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 11122255543333333223556677777788899999999854
No 336
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=38.42 E-value=21 Score=37.21 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.5
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
...|.....||.|. ||.|-++.- .|..||||++.
T Consensus 21 ~~~y~~~~~iG~GA-yGvVcsA~~~~t~~~VAIKKi~ 56 (359)
T KOG0660|consen 21 PRYYVLIEPIGRGA-YGVVCSAKDKRTGEKVAIKKIL 56 (359)
T ss_pred cceecccccccCcc-eeeEEEEEEcCCCCEeehhhhh
Confidence 34455456899999 999999887 58999999996
No 337
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=37.97 E-value=1.9e+02 Score=27.33 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCEEEEccCC
Q 010658 110 KLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 110 ~~Ive~a~~~~idlLVmGs~g 130 (505)
..+..+|.++|++.|++|...
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~ 121 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCE 121 (201)
T ss_pred HHHHHHHHHCCCCEEEEEecc
Confidence 445689999999999999874
No 338
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.77 E-value=7e+02 Score=28.87 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 406 AEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 406 ~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
+.+++.++++++.++.+...+|.+
T Consensus 226 ~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 226 ESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444444444444443
No 339
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.76 E-value=2.1e+02 Score=26.12 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLST 388 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 388 (505)
|..|+.....++.++.+++.....|...-..+..|+..++...
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444444444444433333
No 340
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.38 E-value=6.7e+02 Score=28.54 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 338 DVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEI 408 (505)
Q Consensus 338 e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~ 408 (505)
.+.+-+++.+.|+.-...+-++-++.-++...|+...-.+.+|..++.+....+..+..++...-..+..+
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455566666666666666666666666777776666666666666666665555555555443333333
No 341
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=36.62 E-value=5.1e+02 Score=26.93 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 345 IQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIA 404 (505)
Q Consensus 345 ~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~ 404 (505)
++..|+.-+....+++.+--+..++|..+..|..+.+.++..-...+. +.+++-.+..+
T Consensus 121 iqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq 179 (391)
T KOG1850|consen 121 IQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQ 179 (391)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH
Confidence 556666667777778877777888888888887777777666655544 66666655444
No 342
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.59 E-value=4.7e+02 Score=26.57 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=17.6
Q ss_pred cHHHHHHHhhccccccccccCCCcceEE
Q 010658 452 AAEDIRLATEDFSERFRLKCAGDWTNVY 479 (505)
Q Consensus 452 s~~el~~AT~~Fs~~~~iG~gg~~G~VY 479 (505)
.+..+.......++...+..| |+.||
T Consensus 262 ~l~~~~~~L~~lsP~~~L~RG--Yaiv~ 287 (319)
T PF02601_consen 262 RLERLEARLEALSPLKILKRG--YAIVR 287 (319)
T ss_pred HHHHHHHHHHcCCHHHHHhCc--eEEEE
Confidence 344555666777887777654 88888
No 343
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.41 E-value=5e+02 Score=26.75 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=15.9
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 010658 300 IRLKKKETKDDAERCAKAKWAICLCNSRADQLES 333 (505)
Q Consensus 300 ~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~ 333 (505)
|+.||.+-..+..|+....+.. -.+|+++-|.
T Consensus 324 ~eaKr~e~~~e~qrkEee~rqm--FvqrvkekE~ 355 (406)
T KOG3859|consen 324 YEAKRNEFLGELQRKEEEMRQM--FVQRVKEKEA 355 (406)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHH
Confidence 3456777777764433333322 2345555543
No 344
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.26 E-value=2.9e+02 Score=24.88 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 354 EQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQL 398 (505)
Q Consensus 354 e~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l 398 (505)
+++..+...++++.++|..+..+......++.+....-.++...+
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554444444444444444433433333
No 345
>PRK04406 hypothetical protein; Provisional
Probab=36.22 E-value=2.3e+02 Score=22.84 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
.+...|+.+++--+..+.+|.+.+.....++..+..++..|
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666677777666665555554444444433
No 346
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=36.19 E-value=1.7e+02 Score=29.48 Aligned_cols=79 Identities=9% Similarity=0.093 Sum_probs=50.7
Q ss_pred ChHhHHHHHHHHHHhhh-cCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010658 15 DLQDGYRTLDWTIRKWK-AQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCGK 93 (505)
Q Consensus 15 S~~~S~~AL~WAl~~~~-~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~~ 93 (505)
++. -..|++.|+++-- ..+.+|++|++=||. +.+.|..+..+ |
T Consensus 36 n~~-D~~AvEeAlrLke~~~~~eV~vlt~Gp~~---------------------------------a~~~lr~aLAm--G 79 (260)
T COG2086 36 NPF-DLNAVEEALRLKEKGYGGEVTVLTMGPPQ---------------------------------AEEALREALAM--G 79 (260)
T ss_pred Chh-hHHHHHHHHHhhccCCCceEEEEEecchh---------------------------------hHHHHHHHHhc--C
Confidence 455 6789999999887 578899999984331 12223332222 3
Q ss_pred CccEEEEEe-----c-CCCChHHHHHHHHHHcCCCEEEEccCC
Q 010658 94 VKAEILKVE-----K-SDEPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 94 v~ve~~vve-----~-~~~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
.+- ..++. + +.-..+..|-..+++.+.|+|++|.-.
T Consensus 80 aDr-aili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa 121 (260)
T COG2086 80 ADR-AILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQA 121 (260)
T ss_pred CCe-EEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 221 12222 2 112358899999999999999999853
No 347
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.17 E-value=5.1e+02 Score=26.85 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 010658 391 KGHAEAQLEKAVIA 404 (505)
Q Consensus 391 ~~e~e~~l~~~~~~ 404 (505)
+.+++.++..+..+
T Consensus 216 i~~L~~~l~~~~~~ 229 (362)
T TIGR01010 216 ISTLEGELIRVQAQ 229 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334443333333
No 348
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.91 E-value=3.2e+02 Score=26.76 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHcCCCEEEEccCC
Q 010658 106 EPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 106 ~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
+-+...-+..+.+.|+|.+|+|+.-
T Consensus 178 GGI~~eti~~l~~aGaDi~V~GSai 202 (223)
T PRK08745 178 GGVKADNIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChhh
Confidence 3688888888899999999999874
No 349
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.71 E-value=32 Score=37.14 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=24.8
Q ss_pred ccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 466 RFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
...||.|. .+.||+|.- .+..||||+++-
T Consensus 31 ~e~IG~G~-sa~V~~A~c~p~~e~VAIK~inL 61 (516)
T KOG0582|consen 31 QEVIGVGA-SAVVYLARCIPTNEVVAIKIINL 61 (516)
T ss_pred EEEEeccc-eeEeeeeeecccCCEEEEEEeeh
Confidence 45899999 899999965 589999999973
No 350
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.69 E-value=3.9e+02 Score=25.36 Aligned_cols=15 Identities=0% Similarity=-0.086 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAREMI 300 (505)
Q Consensus 286 ~~~l~~~l~ea~~~~ 300 (505)
..++|.+++.++..|
T Consensus 86 L~rvrde~~~~l~~y 100 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAY 100 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555444
No 351
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.36 E-value=4e+02 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 010658 286 TEFMKSKINEAR 297 (505)
Q Consensus 286 ~~~l~~~l~ea~ 297 (505)
+.-|+.+|++..
T Consensus 88 V~~l~~RL~kLL 99 (190)
T PF05266_consen 88 VKFLRSRLNKLL 99 (190)
T ss_pred cHHHHHHHHHHH
Confidence 555666666544
No 352
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=35.32 E-value=2.8e+02 Score=28.94 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=24.3
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEee
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTY 44 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~ 44 (505)
++|+||+.|-.. |--++.++.+ .|-.|+.+|+..
T Consensus 1 ~kVlValSGGvD-Ssvla~lL~~----~G~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVD-SSVAAALLKE----QGYEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHH-HHHHHHHHHH----cCCcEEEEEEeC
Confidence 379999999997 7755544332 356788999853
No 353
>PTZ00121 MAEBL; Provisional
Probab=35.30 E-value=1e+03 Score=30.11 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=3.3
Q ss_pred ceEEEEEe
Q 010658 155 YCELFIIC 162 (505)
Q Consensus 155 ~C~V~vV~ 162 (505)
-|.|+-++
T Consensus 856 ECvILGtH 863 (2084)
T PTZ00121 856 ECVILGTH 863 (2084)
T ss_pred eEEEEeec
Confidence 34444433
No 354
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.14 E-value=37 Score=37.47 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=26.6
Q ss_pred cccccCCCcceEEEEEE--CCcEEEEEEcc-CCCChhh
Q 010658 467 FRLKCAGDWTNVYRGRL--NHASVAIKTLN-NGLSEED 501 (505)
Q Consensus 467 ~~iG~gg~~G~VYkg~L--~g~~VAVK~L~-~~~~~~e 501 (505)
.+||+|. .|.||-+.- .+..||||+++ ..|..++
T Consensus 279 ~kigqga-SG~vy~A~~~~~~~~VaiK~m~l~~Q~~ke 315 (550)
T KOG0578|consen 279 KKIGQGA-TGGVYVARKISTKQEVAIKRMDLRKQPKKE 315 (550)
T ss_pred hhhcccc-ccceeeeeeccCCceEEEEEEEeccCCchh
Confidence 4899999 999998865 57899999997 4454433
No 355
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.10 E-value=2.3e+02 Score=22.56 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
.+...|+.+++-.+..+.+|.+.+.....++..+.+++..|
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665555544444444333
No 356
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.93 E-value=5.6e+02 Score=28.75 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010658 352 LKEQSCEV 359 (505)
Q Consensus 352 eke~~e~~ 359 (505)
|+++++.+
T Consensus 644 ERee~eRl 651 (940)
T KOG4661|consen 644 EREELERL 651 (940)
T ss_pred HHHHHHHH
Confidence 33333333
No 357
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.76 E-value=2.4e+02 Score=22.59 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHhH
Q 010658 404 ARAEIVKDIEELRRQRDVLHRRI 426 (505)
Q Consensus 404 ~~~~~~~~~~~l~~~r~~~~~~~ 426 (505)
...++..+..+|+..+.....++
T Consensus 40 e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554333333
No 358
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=34.59 E-value=4.2e+02 Score=25.32 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010658 342 RMEIQRDLDSLKEQSCE 358 (505)
Q Consensus 342 R~e~ee~l~~eke~~e~ 358 (505)
|.++|..+...+.++.+
T Consensus 66 r~~~E~E~~~~~~el~~ 82 (201)
T PF12072_consen 66 RQELERELKERRKELQR 82 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 359
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=34.37 E-value=2.1e+02 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.518 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010658 358 EVIRDVEESKNRLSSLI 374 (505)
Q Consensus 358 ~~~~~~~~~~~~l~~~~ 374 (505)
.+.+|+|++...|+.+.
T Consensus 44 ~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 44 KAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556677777776655
No 360
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=34.15 E-value=4.8e+02 Score=25.87 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 386 LSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 386 ~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
|-++.+.+.|+....+..++..+++..++++.++
T Consensus 138 EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~ 171 (265)
T PF06409_consen 138 EKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQ 171 (265)
T ss_pred HHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666655555554444
No 361
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=34.11 E-value=6.1e+02 Score=27.09 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=4.0
Q ss_pred HHHHHHHcCC
Q 010658 112 ILDLVSRLTI 121 (505)
Q Consensus 112 Ive~a~~~~i 121 (505)
+.+|+...+.
T Consensus 73 v~e~a~q~nY 82 (593)
T KOG4807|consen 73 VTEYAVQRNY 82 (593)
T ss_pred HHHHHHHhcc
Confidence 3344444333
No 362
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=33.64 E-value=36 Score=38.42 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.9
Q ss_pred ccccCCCcceEEEEEEC---------CcEEEEEEccC
Q 010658 468 RLKCAGDWTNVYRGRLN---------HASVAIKTLNN 495 (505)
Q Consensus 468 ~iG~gg~~G~VYkg~L~---------g~~VAVK~L~~ 495 (505)
.+|.|. ||.|++|.+. ...||||++..
T Consensus 303 ~lg~g~-fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~ 338 (609)
T KOG0200|consen 303 YLGEGA-FGQVVKALLFGLSKALLSIYVTVAVKMLKE 338 (609)
T ss_pred eeeccc-ccceEeEEEeecccccccceEEEEEEeccc
Confidence 899999 9999999973 24799999973
No 363
>PRK00846 hypothetical protein; Provisional
Probab=33.64 E-value=2.6e+02 Score=22.75 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIE 413 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~ 413 (505)
.+...|+.++.-.+..+.+|.+.+......+..+..++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777776676777777666654444444444433
No 364
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.62 E-value=42 Score=38.18 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=47.5
Q ss_pred ccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe--CCeEeeeecC
Q 010658 95 KAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC--GGKLVSLKGE 172 (505)
Q Consensus 95 ~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~--kgkl~~~r~a 172 (505)
+-++++.+..+ +++-+...|.+|-|+.+.+.+. .+...+---.--...+|+.||+++|| +|+....|.-
T Consensus 177 nge~hlydnqg--------nF~~Kl~~~c~Vn~tg~~s~~~-~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 177 NGETHLYDNQG--------NFERKLEKDCEVNGTGIFSNFP-TKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred CCcEEEecccc--------cHHHhhhhceEEeeeeeecCCC-ccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 34566655432 3677888999999998765553 22111100001235578899999999 6888888988
Q ss_pred CCCCc
Q 010658 173 NDEGI 177 (505)
Q Consensus 173 ~~~~~ 177 (505)
|++.|
T Consensus 248 ND~~P 252 (1189)
T KOG2041|consen 248 NDPEP 252 (1189)
T ss_pred CCCCC
Confidence 88654
No 365
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.59 E-value=3.8e+02 Score=24.62 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRLSSLIELQ--SELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
+..-++++..++.+.-.+..+|..+.... .+|..++......+..++.+|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333322 3333444444444444444444
No 366
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=33.57 E-value=5.1e+02 Score=29.40 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 366 SKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 366 ~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
+.+.+..+.++...+...+..++....++..++..+......+..+...|+.+++
T Consensus 36 ~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~ 90 (618)
T PF06419_consen 36 FLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKE 90 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666777777666666666666666666654
No 367
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.50 E-value=5.1e+02 Score=28.54 Aligned_cols=36 Identities=14% Similarity=-0.092 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 364 EESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 364 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
.+..+-+..+.++..++..++.+.+..+.+++++|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLS 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333
No 368
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.45 E-value=1.2e+03 Score=30.21 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=58.2
Q ss_pred hhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 326 SRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIAR 405 (505)
Q Consensus 326 ~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~ 405 (505)
..+..+.+-|-.|+-+=.++-+.|.+.++++-++..++...+.........+.++.. .+.....-|++++.
T Consensus 1039 ~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~---~w~E~~~~Leqe~~------ 1109 (1822)
T KOG4674|consen 1039 EQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQER---DWSEKEDALEQEVN------ 1109 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhccc---chHHHHHHHHHHHH------
Confidence 345666777777777777777777777777777777777777666654444443333 33333333444333
Q ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHhh
Q 010658 406 AEIVKDIEELRRQRDVLHRRIEFCKEK 432 (505)
Q Consensus 406 ~~~~~~~~~l~~~r~~~~~~~e~~~~~ 432 (505)
.....+..|..+-.+...+++.+...
T Consensus 1110 -~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1110 -ELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444556666666666666666443
No 369
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=33.10 E-value=50 Score=31.68 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=25.4
Q ss_pred ccccccCCCcceEEEEEECCcEEEEEEccCC
Q 010658 466 RFRLKCAGDWTNVYRGRLNHASVAIKTLNNG 496 (505)
Q Consensus 466 ~~~iG~gg~~G~VYkg~L~g~~VAVK~L~~~ 496 (505)
...|+.|+ +|.||.|...|..+|+|+=..+
T Consensus 27 ~~~L~KG~-~s~Vyl~~~~~~~~a~Kvrr~d 56 (201)
T COG2112 27 EKELAKGT-TSVVYLGEWRGGEVALKVRRRD 56 (201)
T ss_pred hhhhhccc-ccEEEEeeccCceEEEEEecCC
Confidence 34789999 9999999999999999986543
No 370
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=33.09 E-value=1.1e+02 Score=33.20 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccC
Q 010658 68 KLEILKKYEQGKTDNLLSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 68 ~~~~~~~~~~~~~~~lL~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
.+..+++..-+...++++.+..-+..+++....... .++..+.|.+++.++++..||.|.+
T Consensus 37 ~~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t-~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 37 LVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKT-AEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHCCCEEEEECC-HHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 355566666677788888888877778887777664 2467788999999999999999954
No 371
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.75 E-value=3.1e+02 Score=23.69 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 380 LSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 380 l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
++.++......+.++..++...+.+-+.+..+.+.|
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443333334444444444
No 372
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=32.66 E-value=3.6e+02 Score=26.50 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=52.3
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCe-EEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSIS-IVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLS 85 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~-IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~ 85 (505)
++++=+.|-+. |..|+-||+.. |.. +.|++|+|+.+ -.++ ...|.. + +-
T Consensus 2 k~~aL~SGGKD-S~~Al~~a~~~----G~eV~~Ll~~~p~~~-dS~m----~H~~n~----~----------------~~ 51 (223)
T COG2102 2 KVIALYSGGKD-SFYALYLALEE----GHEVVYLLTVKPENG-DSYM----FHTPNL----E----------------LA 51 (223)
T ss_pred cEEEEEecCcH-HHHHHHHHHHc----CCeeEEEEEEecCCC-Ceee----eeccch----H----------------HH
Confidence 35556667776 88899998753 334 56777766532 0111 111211 0 22
Q ss_pred HHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccCC
Q 010658 86 KYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 86 ~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
++..-|-++.+......+..++=.+.+.+.....++|-||.|+-.
T Consensus 52 ~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~ 96 (223)
T COG2102 52 ELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIA 96 (223)
T ss_pred HHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhh
Confidence 233334355443333333223445677778888899999999853
No 373
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.38 E-value=8.5e+02 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELS 381 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~ 381 (505)
+.|+..++.+++++.+.++.+++=.........++
T Consensus 541 ~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E 575 (809)
T KOG0247|consen 541 SQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILE 575 (809)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 34444455555555555544444333333333333
No 374
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.32 E-value=9.6e+02 Score=28.87 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010658 281 SVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVI 360 (505)
Q Consensus 281 ~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~ 360 (505)
.+++ .++|...+.-..+.. ++..+-++. .+|.+|... ++...-=+.|..+..+=++-.+.|.++...++..+
T Consensus 207 L~~~-~~~l~kdVE~~rer~---~~~~~Ie~l-~~k~~~v~y---~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~ 278 (1072)
T KOG0979|consen 207 LEDE-IDKLEKDVERVRERE---RKKSKIELL-EKKKKWVEY---KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKK 278 (1072)
T ss_pred HHHH-HHHHHHHHHHHHHHH---HHHHHHHHH-HHhccccch---HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHhh
Q 010658 361 RDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEK 432 (505)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~~ 432 (505)
.+++. +-..+..+...+...+.++...+.+.-.++...-....++...++.++++.+....+++..+..
T Consensus 279 eeLe~---~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~ 347 (1072)
T KOG0979|consen 279 EELES---EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKM 347 (1072)
T ss_pred hhHHh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 375
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=31.74 E-value=3.6e+02 Score=26.51 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHcCCCEEEEccC
Q 010658 106 EPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 106 ~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
+-+...-+..+.+.|||.+|+|++
T Consensus 176 GGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 176 GSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChH
Confidence 367777888889999999999976
No 376
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.73 E-value=4.2e+02 Score=24.54 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHhhc
Q 010658 392 GHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEKD 433 (505)
Q Consensus 392 ~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~~~ 433 (505)
..+..+|......+..+..++..+..+|+.+......++...
T Consensus 94 ~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 94 ERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444444555555566666666666666665444
No 377
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.58 E-value=5e+02 Score=25.38 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHhH
Q 010658 404 ARAEIVKDIEELRRQRDVLHRRI 426 (505)
Q Consensus 404 ~~~~~~~~~~~l~~~r~~~~~~~ 426 (505)
.-..+..+.+.+.++-|++..+.
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHH
Confidence 33334444444444444444333
No 378
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=31.56 E-value=24 Score=38.89 Aligned_cols=31 Identities=26% Similarity=0.211 Sum_probs=25.7
Q ss_pred cccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
|.-...||+|. |.+||++.= .+..+|||+|.
T Consensus 75 F~Fg~~lGeGS-YStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 75 FKFGKILGEGS-YSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred cchhheecccc-ceeEEEeeecCCCceeeHhhhh
Confidence 44445899999 999999986 48899999985
No 379
>PRK11281 hypothetical protein; Provisional
Probab=31.54 E-value=8e+02 Score=30.10 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHH
Q 010658 317 AKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKN--------------------RLSSLIEL 376 (505)
Q Consensus 317 ae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~--------------------~l~~~~~~ 376 (505)
..+......+.+-++-....+.-++-+++++.++.--+++.+..++++..++ +|..+..+
T Consensus 57 ~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~ 136 (1113)
T PRK11281 57 EDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQ 136 (1113)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010658 377 QSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQ 418 (505)
Q Consensus 377 ~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~ 418 (505)
+..+..++...+..+..+..+.+.|...+.+..+++.+++++
T Consensus 137 Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 137 LQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
No 380
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.34 E-value=4.3e+02 Score=24.48 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010658 344 EIQRDLDSLKEQSCEVIRD 362 (505)
Q Consensus 344 e~ee~l~~eke~~e~~~~~ 362 (505)
+.|+.|+..+++..+++.+
T Consensus 66 ~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 66 YYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 381
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=31.24 E-value=3.7e+02 Score=27.97 Aligned_cols=23 Identities=9% Similarity=0.322 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCCCEEEEccCC
Q 010658 108 VHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 108 ~~~~Ive~a~~~~idlLVmGs~g 130 (505)
+...+.++|.++|+.+|+-|..+
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~ 170 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCH
Confidence 56678899999999999999985
No 382
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=30.69 E-value=4.3e+02 Score=25.75 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
|+++-.-|-+. |-.||-+|++. . .-.+|++..+... .. .+...++.. + -+
T Consensus 2 k~v~l~SGGKD-S~lAl~~a~~~-~---~v~~L~t~~~~~~--~s--~~~H~~~~~-~--------------------~~ 51 (218)
T PF01902_consen 2 KVVALWSGGKD-SCLALYRALRQ-H---EVVCLLTMVPEEE--DS--YMFHGVNIE-L--------------------IE 51 (218)
T ss_dssp EEEEE--SSHH-HHHHHHHHHHT-----EEEEEEEEEESTT--T---SSS-STTGT-C--------------------HH
T ss_pred cEEEEEcCcHH-HHHHHHHHHHh-C---CccEEEEeccCCC--Cc--ccccccCHH-H--------------------HH
Confidence 46667778886 99999999887 2 2457788776532 10 111111111 1 11
Q ss_pred HHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEccC
Q 010658 87 YLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLS 129 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs~ 129 (505)
+...|-++.....-+.++.++--+.+.+..++.+|+.+|-|.-
T Consensus 52 ~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI 94 (218)
T PF01902_consen 52 AQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDI 94 (218)
T ss_dssp HHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TT
T ss_pred HHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcC
Confidence 1111224444443444434455677888888899999999985
No 383
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.65 E-value=2.9e+02 Score=22.25 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 375 ELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
.+..+|+.+++.-+..+.+|...+.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~la 32 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALA 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666655555666555555
No 384
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.36 E-value=4.9e+02 Score=24.89 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVE 364 (505)
Q Consensus 349 l~~eke~~e~~~~~~~ 364 (505)
+..-++.++....+++
T Consensus 100 ~~~l~~~~~~~~~~~~ 115 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVE 115 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 385
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=30.28 E-value=6e+02 Score=26.59 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=25.3
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
++|+||+.|-.. |--++.++.+ .|..|+.||+.
T Consensus 1 ~kVlValSGGvD-Ssv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVD-SSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHH-HHHHHHHHHH----cCCeEEEEEEE
Confidence 479999999987 7766666544 36689999984
No 386
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=30.28 E-value=5.8e+02 Score=25.64 Aligned_cols=127 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHH---HH
Q 010658 278 SNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSL---KE 354 (505)
Q Consensus 278 ~~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~e---ke 354 (505)
+++++++ ...|.-+++.+...-+ |-..+.+. --+..|..|.+=.++-.-+|..|+.+ |+
T Consensus 47 Eaelesq-L~q~etrnrdl~t~nq--rl~~E~e~---------------~Kek~e~q~~q~y~q~s~Leddlsqt~aike 108 (333)
T KOG1853|consen 47 EAELESQ-LDQLETRNRDLETRNQ--RLTTEQER---------------NKEKQEDQRVQFYQQESQLEDDLSQTHAIKE 108 (333)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 010658 355 QSCEVIRDVEESKNRLSSLIELQ----SELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVL 422 (505)
Q Consensus 355 ~~e~~~~~~~~~~~~l~~~~~~~----~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~ 422 (505)
++.+..++++.+..-|....+-. ..+++++-.+-....-||.+|..-..++.++.+-.++.+-.|..+
T Consensus 109 ql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 109 QLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 387
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=29.85 E-value=2.8e+02 Score=21.95 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 373 LIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
++.++..+..++.......+.+-.+-..++..+.....+..+|+.+-+
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544444444444444444444443
No 388
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=29.79 E-value=6.3e+02 Score=25.97 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 010658 287 EFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIR-DVEE 365 (505)
Q Consensus 287 ~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~-~~~~ 365 (505)
..|+.+|+...+-|+ .|...++...++...|..+..| |..... ..+..+.+++..++. -+++
T Consensus 138 ~~L~eKlK~l~eQye-~rE~~~~~~~k~keLE~Ql~~A--Kl~q~~--------------~~~~~e~~k~~~~~~~~l~~ 200 (309)
T PF09728_consen 138 EELREKLKSLIEQYE-LREEHFEKLLKQKELEVQLAEA--KLEQQQ--------------EEAEQEKEKAKQEKEILLEE 200 (309)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHH--HHHHHH--------------HHHHhHHHHHHHHHHHHHHH
Confidence 346777777777773 4566666665443333322211 222211 112222222222222 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHh
Q 010658 366 SKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKE 431 (505)
Q Consensus 366 ~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~ 431 (505)
+. .+......-..|..|+..+...-.+++..|.++-..-..++.+++++-+.-..+-++...++.
T Consensus 201 ~~-~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 201 AA-QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 333344444667777888888888888888888888888888888887766555555555543
No 389
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=29.66 E-value=7.6e+02 Score=26.83 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 337 EDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSEL--SNKLQLSTMAKGHAEAQLEKAVIARAEIVK 410 (505)
Q Consensus 337 ~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l--~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~ 410 (505)
+++.+|-- ++.+.--++++++....+.++...|...+.+...+ +.++.-....+..|+.+|.....+++.+..
T Consensus 233 N~Ls~rar-~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 233 NTVSARMQ-KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443332 23344444444444444555555554444444333 333444445566777777766666665544
No 390
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.62 E-value=8.7e+02 Score=27.51 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=19.1
Q ss_pred CccEEEEEecCCCChHHHHHHHHHHcCCCEE
Q 010658 94 VKAEILKVEKSDEPVHKLILDLVSRLTITKL 124 (505)
Q Consensus 94 v~ve~~vve~~~~d~~~~Ive~a~~~~idlL 124 (505)
++..+.+.-. ..++...+.-++++..-+..
T Consensus 84 igyq~fLYp~-e~~~R~ll~fLiekLP~~~~ 113 (594)
T PF05667_consen 84 IGYQTFLYPN-EKDLRRLLMFLIEKLPRENT 113 (594)
T ss_pred CcchhhccCC-hHHHHHHHHHHHHHCCcccc
Confidence 3444444433 24778888889998887743
No 391
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.32 E-value=3e+02 Score=23.77 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLSSLIELQSE 379 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~ 379 (505)
+.|+.-.+++..+-.++.+++..+..+.+.+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~ 40 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENAR 40 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444333333
No 392
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=29.28 E-value=8.4e+02 Score=27.20 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHhh
Q 010658 392 GHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKEK 432 (505)
Q Consensus 392 ~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~~ 432 (505)
...|..+.+|+.. |.+-.+-|++.......+.+++++.
T Consensus 284 v~QE~R~SkAvev---M~qhvenLkr~~~kehaeL~E~k~~ 321 (538)
T PF05781_consen 284 VHQESRVSKAVEV---MIQHVENLKRMYEKEHAELEELKKL 321 (538)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666655 5555566666666666777777554
No 393
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=29.27 E-value=9.8e+02 Score=28.02 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 341 SRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKA 401 (505)
Q Consensus 341 ~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~ 401 (505)
.|.++|..|+....++.++.-+...+..-|+.-..-..+|..+...++..+..+...|+..
T Consensus 86 ~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ 146 (769)
T PF05911_consen 86 IKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLEST 146 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666666666666665555444444333333333333333333333333444444433
No 394
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.01 E-value=1e+02 Score=25.63 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 2 DTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 2 ~~~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
..++..|+++-|.+-. -|++.+...|...+-|||+.|
T Consensus 50 DDEgD~VllT~D~DL~-------e~v~iar~~g~~~v~L~v~~~ 86 (86)
T cd06409 50 DDEGDIVLITSDSDLV-------AAVLVARSAGLKKLDLHLHYP 86 (86)
T ss_pred cCCCCEEEEeccchHH-------HHHHHHHHcCCCEEEEEEeCC
Confidence 4567899999998754 577778888888898998754
No 395
>PRK08576 hypothetical protein; Provisional
Probab=29.00 E-value=3e+02 Score=29.90 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=24.1
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEE
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHV 42 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV 42 (505)
.+|+|++.|-.. |-.+|..+.+... .+.++|+
T Consensus 235 ~rVvVafSGGKD-StvLL~La~k~~~----~V~aV~i 266 (438)
T PRK08576 235 WTVIVPWSGGKD-STAALLLAKKAFG----DVTAVYV 266 (438)
T ss_pred CCEEEEEcChHH-HHHHHHHHHHhCC----CCEEEEe
Confidence 389999999987 8877766666543 2777887
No 396
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=28.83 E-value=5e+02 Score=24.48 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 344 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLST 388 (505)
Q Consensus 344 e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 388 (505)
|+....++-..+.++..++++.-.++|....+++..+.++++...
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~Lr 150 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLR 150 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555444444444433333333343333333
No 397
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=28.61 E-value=6.2e+02 Score=26.87 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=26.9
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
..+++|++.|-.. |--|+-|+.+ .|..++.||+.
T Consensus 176 ~gkvvvllSGGiD-S~vaa~l~~k----~G~~v~av~~~ 209 (394)
T PRK01565 176 SGKALLLLSGGID-SPVAGYLAMK----RGVEIEAVHFH 209 (394)
T ss_pred CCCEEEEECCChh-HHHHHHHHHH----CCCEEEEEEEe
Confidence 5789999999987 8777766644 37789999984
No 398
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=28.51 E-value=57 Score=35.64 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.8
Q ss_pred HhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 459 ATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 459 AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
..|.|.-...||.|. ||.|-.+.- +|..+|||.|+.
T Consensus 95 ~lNqy~l~~eiG~G~-yGkVkLar~~~~~~l~AiKil~K 132 (576)
T KOG0585|consen 95 QLNQYELIKEIGSGQ-YGKVKLARDEVDGKLYAIKILPK 132 (576)
T ss_pred ehhheehhhhhcCCc-cceEEEEeecCCCcEEEEEeech
Confidence 345666667899999 999977764 789999999963
No 399
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.41 E-value=3e+02 Score=21.71 Aligned_cols=48 Identities=15% Similarity=0.044 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 363 VEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVK 410 (505)
Q Consensus 363 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~ 410 (505)
+|.+....+.+...+..|..+..........+-.+.+.|......|..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444544444444444444444444444433333
No 400
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=28.33 E-value=8.7e+02 Score=27.11 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 010658 289 MKSKINEARE 298 (505)
Q Consensus 289 l~~~l~ea~~ 298 (505)
|+.++.++..
T Consensus 169 l~~~~~e~~~ 178 (591)
T KOG2412|consen 169 LVEKLSETRK 178 (591)
T ss_pred hhhhHHHHHH
Confidence 4444444443
No 401
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.30 E-value=86 Score=29.37 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010658 328 ADQLESLTKEDVASRMEIQRDLDSLKEQS----CEVIRDVEESKNRLSSLIELQ 377 (505)
Q Consensus 328 ~~~~e~~~~~e~~~R~e~ee~l~~eke~~----e~~~~~~~~~~~~l~~~~~~~ 377 (505)
.+++|..|-..+.+-==+|.+| .||+.+ +++|.|+-+++.+| .+++++
T Consensus 2 LeD~EsklN~AIERnalLE~EL-dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-DEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
No 402
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.13 E-value=9.8e+02 Score=27.61 Aligned_cols=8 Identities=0% Similarity=0.185 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010658 286 TEFMKSKI 293 (505)
Q Consensus 286 ~~~l~~~l 293 (505)
+++|..++
T Consensus 75 ~rrle~e~ 82 (739)
T PF07111_consen 75 LRRLEEEV 82 (739)
T ss_pred HHHHHHHH
Confidence 33333333
No 403
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.08 E-value=7.8e+02 Score=26.49 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=21.4
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHH
Q 010658 301 RLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRM 343 (505)
Q Consensus 301 ~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~ 343 (505)
+-.+.+|-.++.|.+..+.+-.-|+.+ ..-..|..++-+|=
T Consensus 65 E~tk~EaV~av~rq~~eeVaSlqa~~k--~~~~~ye~q~~~~l 105 (542)
T KOG0993|consen 65 EPTKSEAVSAVVRQEEEEVASLQASQK--SPNPTYECQMCQNL 105 (542)
T ss_pred CcchHHHHHHHHHhhccccchhHHHhc--CCCccHHHHHHHHH
Confidence 334677777777776666554444332 33334444444433
No 404
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.92 E-value=3.6e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010658 343 MEIQRDLDSLKEQSCEVIRDVEE 365 (505)
Q Consensus 343 ~e~ee~l~~eke~~e~~~~~~~~ 365 (505)
..++..|...++++++.+.++.+
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777766666654
No 405
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=27.78 E-value=51 Score=35.31 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.5
Q ss_pred cccccccccCCCcceEEEEEECC--cEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRLNH--ASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L~g--~~VAVK~L~ 494 (505)
|.--..+|.|. .|+||-+.+.| ..+|+|++.
T Consensus 79 f~llk~LG~Gd-iG~VyL~~l~~t~~~fAmKVmd 111 (459)
T KOG0610|consen 79 FRLLKRLGCGD-IGTVYLVELRGTNCLFAMKVMD 111 (459)
T ss_pred HHHHHHcCCCC-ceeEEEEEecCCCceEEEEEec
Confidence 33344789998 99999999965 789999996
No 406
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=27.71 E-value=52 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.1
Q ss_pred ccccccccccCCCcceEEEEEE-CC-cEEEEEEcc
Q 010658 462 DFSERFRLKCAGDWTNVYRGRL-NH-ASVAIKTLN 494 (505)
Q Consensus 462 ~Fs~~~~iG~gg~~G~VYkg~L-~g-~~VAVK~L~ 494 (505)
+..-.+.|-+|| |+.||-+.. .+ ..+|+|++-
T Consensus 38 ~v~V~~vLAEGG-Fa~VYla~~~~~~~~~AlKrm~ 71 (738)
T KOG1989|consen 38 RVTVEKVLAEGG-FAQVYLAQDVKGGKKYALKRMY 71 (738)
T ss_pred EEEEEEEEccCC-cEEEEEEEecCCCceeeeeeee
Confidence 344467888999 999999998 44 899999985
No 407
>PRK14561 hypothetical protein; Provisional
Probab=27.59 E-value=3.9e+02 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=21.1
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
+|+|++-|-.. |--.+.|+.. + ..+.++|+.
T Consensus 2 kV~ValSGG~D-Sslll~~l~~-~----~~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKD-SSLAAILLER-F----YDVELVTVN 32 (194)
T ss_pred EEEEEEechHH-HHHHHHHHHh-c----CCeEEEEEe
Confidence 69999999987 7766555533 2 345677773
No 408
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=7e+02 Score=29.27 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 341 SRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQ 377 (505)
Q Consensus 341 ~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~ 377 (505)
.++++++++.....+|.+++++.+-++.+|..+...+
T Consensus 686 e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~ 722 (970)
T KOG0946|consen 686 ENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQ 722 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 3566677777777777788888888888777444333
No 409
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.35 E-value=4e+02 Score=22.81 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010658 381 SNKLQLSTMAKGHAEAQL 398 (505)
Q Consensus 381 ~~~~~~~~~~~~e~e~~l 398 (505)
+..+.+....+..+++++
T Consensus 71 ~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 71 QLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333333333333333333
No 410
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.21 E-value=6.1e+02 Score=24.91 Aligned_cols=9 Identities=0% Similarity=0.117 Sum_probs=3.8
Q ss_pred hhhhhhhHH
Q 010658 275 QIDSNMSVA 283 (505)
Q Consensus 275 ~~~~~~~ea 283 (505)
-|+|.+.++
T Consensus 28 ~l~Q~ird~ 36 (225)
T COG1842 28 MLEQAIRDM 36 (225)
T ss_pred HHHHHHHHH
Confidence 344444444
No 411
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.20 E-value=3.8e+02 Score=27.37 Aligned_cols=9 Identities=11% Similarity=0.050 Sum_probs=3.9
Q ss_pred cccCCCceE
Q 010658 149 HHHMPDYCE 157 (505)
Q Consensus 149 ~k~Ap~~C~ 157 (505)
+.+.++.|+
T Consensus 98 ~~tl~~pqs 106 (294)
T KOG4571|consen 98 LQTLTDPQS 106 (294)
T ss_pred CCCCcchhh
Confidence 444444444
No 412
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=26.91 E-value=61 Score=35.10 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=24.7
Q ss_pred cccccccccCCCcceEEEEEE--C-CcEEEEEEcc
Q 010658 463 FSERFRLKCAGDWTNVYRGRL--N-HASVAIKTLN 494 (505)
Q Consensus 463 Fs~~~~iG~gg~~G~VYkg~L--~-g~~VAVK~L~ 494 (505)
|.-...||.|+ +|.||++.- + +..||+|.+.
T Consensus 69 y~~~~~lg~G~-~g~vy~a~~~~~~~~~vv~K~~~ 102 (478)
T PTZ00267 69 YVLTTLVGRNP-TTAAFVATRGSDPKEKVVAKFVM 102 (478)
T ss_pred EEEEEEEEeCC-CcEEEEEEEcCCCCeEEEEEEcc
Confidence 55567899999 999999975 3 5678888764
No 413
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.67 E-value=1.2e+03 Score=28.01 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=8.6
Q ss_pred cccccccccCCC
Q 010658 463 FSERFRLKCAGD 474 (505)
Q Consensus 463 Fs~~~~iG~gg~ 474 (505)
|-+.+.+..||+
T Consensus 604 FmPdsFlrrGGd 615 (1243)
T KOG0971|consen 604 FMPDSFLRRGGD 615 (1243)
T ss_pred hCcHhhccCCCC
Confidence 667777777773
No 414
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.60 E-value=5.8e+02 Score=27.51 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHh
Q 010658 347 RDLDSLKEQSCEVIRDVE-----ESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIAR-AEIVKDIEELRRQRD 420 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~-~~~~~~~~~l~~~r~ 420 (505)
..|.-+|=.+|++-.+-. +.++++.++...-....+-+....+++.+|+-.++.-..-+ ..+.+++|+|+..++
T Consensus 139 ~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr 218 (552)
T KOG2129|consen 139 KQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKR 218 (552)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 010658 421 VLHR 424 (505)
Q Consensus 421 ~~~~ 424 (505)
-+..
T Consensus 219 ~Lq~ 222 (552)
T KOG2129|consen 219 YLQK 222 (552)
T ss_pred HHHH
No 415
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=26.55 E-value=6.3e+02 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.1
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
+|+||+-|-.. |--++.++.+ .+..|+.||+.
T Consensus 1 kVlValSGGvD-Ssvla~lL~~----~g~~v~~v~i~ 32 (349)
T cd01998 1 KVVVAMSGGVD-SSVAAALLKE----QGYEVIGVFMK 32 (349)
T ss_pred CEEEEecCCHH-HHHHHHHHHH----cCCcEEEEEEe
Confidence 58999999987 7755544433 35678889984
No 416
>PF14282 FlxA: FlxA-like protein
Probab=26.40 E-value=4.1e+02 Score=22.70 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010658 359 VIRDVEESKNRLS 371 (505)
Q Consensus 359 ~~~~~~~~~~~l~ 371 (505)
|.+++..+.+.|.
T Consensus 24 L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 24 LQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 417
>PRK14127 cell division protein GpsB; Provisional
Probab=26.16 E-value=2.8e+02 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 343 MEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELS 381 (505)
Q Consensus 343 ~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~ 381 (505)
+|+.+-|..--+.++.+..+...+++++..+..++.++.
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544433333333
No 418
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=26.12 E-value=6.2e+02 Score=24.64 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRL 370 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l 370 (505)
+.+.|..++++-++.+.+...+
T Consensus 128 l~kskk~Y~~~~ke~~~a~~k~ 149 (251)
T cd07653 128 LEKSKKAYEKAFKEAEKAKQKY 149 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 419
>PRK01156 chromosome segregation protein; Provisional
Probab=26.01 E-value=1.1e+03 Score=27.66 Aligned_cols=131 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 287 EFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEES 366 (505)
Q Consensus 287 ~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~ 366 (505)
+.+..++.+.-..+ ...+..+-.-....+..++++...+..-+.....+...+.++.+.+.+++++
T Consensus 583 ~~~~~~l~e~~~~l--------------~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~ 648 (895)
T PRK01156 583 ETNRSRSNEIKKQL--------------NDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKL 648 (895)
T ss_pred HHHHHHHHHHHHHH--------------HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHHh
Q 010658 367 KNRLSSLIELQSELSN----------KLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCKE 431 (505)
Q Consensus 367 ~~~l~~~~~~~~~l~~----------~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~~ 431 (505)
.+++..+..+...++. .+.........++.++......++.+..+++.+..+-.....+++....
T Consensus 649 ~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~ 723 (895)
T PRK01156 649 RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 420
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=26.01 E-value=1.4e+02 Score=33.91 Aligned_cols=34 Identities=6% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 336 KEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLS 371 (505)
Q Consensus 336 ~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~ 371 (505)
.+|. ||-+.+.++..+.|+|+||.+..+.+.++.
T Consensus 362 aeeF--~kRV~~~ia~~~AEIekmK~~Hak~m~k~k 395 (669)
T PF08549_consen 362 AEEF--RKRVAKKIADMNAEIEKMKARHAKRMAKFK 395 (669)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 788889999999999999999998888875
No 421
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=25.96 E-value=23 Score=40.86 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=0.0
Q ss_pred hHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 327 RADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRL 370 (505)
Q Consensus 327 ~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l 370 (505)
+..+++........+.+++++.+...++++..++..+|....+|
T Consensus 108 ~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L 151 (722)
T PF05557_consen 108 RNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRL 151 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444555666777777777777766666655555
No 422
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.94 E-value=6.5e+02 Score=24.84 Aligned_cols=6 Identities=50% Similarity=0.628 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010658 454 EDIRLA 459 (505)
Q Consensus 454 ~el~~A 459 (505)
..+..|
T Consensus 195 ~~isaA 200 (302)
T PF10186_consen 195 EEISAA 200 (302)
T ss_pred HHHHHH
Confidence 334333
No 423
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.92 E-value=1.3e+03 Score=28.32 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010658 282 VAERTEFMKSKINEAREMI 300 (505)
Q Consensus 282 eae~~~~l~~~l~ea~~~~ 300 (505)
..++.+.++..++++....
T Consensus 63 ~~~~~~~~~~~i~~ap~~~ 81 (1109)
T PRK10929 63 SLERAKQYQQVIDNFPKLS 81 (1109)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3344555555555555443
No 424
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.66 E-value=5.9e+02 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHcCCCEEEEccCC
Q 010658 106 EPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 106 ~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
+.+...-+..+.+.|+|.+|+||.-
T Consensus 186 GGI~~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 186 GSMTLELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred CCCCHHHHHHHHHCCCCEEEEChhh
Confidence 3677788888999999999999874
No 425
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=25.64 E-value=16 Score=39.55 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=29.0
Q ss_pred hhccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
.+.|+.-++||.|| ||-||-+.. .|...|-|+|.
T Consensus 184 ~n~F~~~RvlGkGG-FGEV~acqvraTGKMYAcKkL~ 219 (591)
T KOG0986|consen 184 KNTFRVYRVLGKGG-FGEVCACQVRATGKMYACKKLD 219 (591)
T ss_pred ccceeeeEEEeccc-ccceeEEEEecchhhHHHHHHH
Confidence 36789999999999 999998888 37788888885
No 426
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=25.61 E-value=2.9e+02 Score=29.80 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=15.7
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhh
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKW 30 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~ 30 (505)
.|||| +++. . ..+||.|++...
T Consensus 3 ~kVLv-lG~G-~-re~al~~~l~~~ 24 (435)
T PRK06395 3 MKVML-VGSG-G-REDAIARAIKRS 24 (435)
T ss_pred eEEEE-ECCc-H-HHHHHHHHHHhC
Confidence 57888 5433 3 568999999765
No 427
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.58 E-value=1.9e+02 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 358 EVIRDVEESKNRLSSLIELQSELSNK 383 (505)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~l~~~ 383 (505)
++..++++.+++....+.++..|+.|
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333
No 428
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.45 E-value=3.6e+02 Score=21.70 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 010658 378 SELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRR 425 (505)
Q Consensus 378 ~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~ 425 (505)
.+|+.+|.+.+..+...|+-|+.--..+++....+++++.+-+.+...
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~k 51 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEK 51 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888877766666677777777776665544333
No 429
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.40 E-value=5.2e+02 Score=23.51 Aligned_cols=43 Identities=16% Similarity=0.012 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 355 QSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQ 397 (505)
Q Consensus 355 ~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~ 397 (505)
++..++.+.+.+...|+.-+.+..+|+....+...-+..+|++
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555455544444
No 430
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.40 E-value=1.3e+03 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 374 IELQSELSNKLQLSTMAKGHAEAQLEKA 401 (505)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~e~e~~l~~~ 401 (505)
.+.+..|-.++...+..++.+..+...+
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~~~~~~~ 291 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIASQQRQA 291 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444454444444444433
No 431
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=25.27 E-value=3.9e+02 Score=22.03 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 010658 369 RLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDV 421 (505)
Q Consensus 369 ~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~ 421 (505)
.+.....-..-|...+......+..++.++..+...+.....+...+.+.++.
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555566666666665555555555555555555443
No 432
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=2.6e+02 Score=24.78 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 365 ESKNRLSSLIELQSELSNKLQLSTMAKGHAE 395 (505)
Q Consensus 365 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e 395 (505)
.....|+.+..++..++.++++...++.|++
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444443
No 433
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.09 E-value=6.2e+02 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 343 MEIQRDLDSLKEQSCEVIRDVEES 366 (505)
Q Consensus 343 ~e~ee~l~~eke~~e~~~~~~~~~ 366 (505)
++.++.++.-++++.+.+.+..++
T Consensus 96 ~eA~~~l~e~e~~L~~A~~eA~~I 119 (205)
T PRK06231 96 QQAQQLLENAKQRHENALAQAKEI 119 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 434
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=24.89 E-value=1.3e+02 Score=30.98 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=28.2
Q ss_pred cCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEeCC
Q 010658 119 LTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIICGG 164 (505)
Q Consensus 119 ~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~kg 164 (505)
..+.++|+|++...+..|-+ .-+.+..|+..|..+|.=+|||-|
T Consensus 229 srVnKVIigt~avl~NGgl~--~~~G~~~vAlaAk~h~vPv~VlAp 272 (353)
T KOG1465|consen 229 SRVNKVIIGTHAVLANGGLR--APSGVHTVALAAKHHSVPVIVLAP 272 (353)
T ss_pred hhcceEEEEeeeEecCCCee--ccchHHHHHHHHHhcCCcEEEecc
Confidence 44558888887533222111 223466788888888888888877
No 435
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.83 E-value=7.4e+02 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhHhHHHHhHH
Q 010658 406 AEIVKDIEELRRQRDVLHRRIE 427 (505)
Q Consensus 406 ~~~~~~~~~l~~~r~~~~~~~e 427 (505)
.++...+.+++..+........
T Consensus 157 ~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 157 QELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444443
No 436
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.80 E-value=5.6e+02 Score=23.70 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 350 DSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 350 ~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~ 417 (505)
.+-|...-.....+...+++|..+......+..++......+..+..++..+......+.....+|+.
T Consensus 66 ~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 66 LKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555555555555555555555555555555555554444444444444433
No 437
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=24.73 E-value=3.3e+02 Score=26.71 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHcCCCEEEEccCC
Q 010658 106 EPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 106 ~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
+.+...-+..+.+.|+|.+|+||.-
T Consensus 176 GGI~~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 176 GGINLETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred CCcCHHHHHHHHHcCCCEEEEEEEE
Confidence 4788888999999999999999953
No 438
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.71 E-value=9.2e+02 Score=26.17 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=7.5
Q ss_pred hccccccccccCCCcceEEE
Q 010658 461 EDFSERFRLKCAGDWTNVYR 480 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYk 480 (505)
++|-.+..-+... .|..|.
T Consensus 447 ~h~~~ssm~~ss~-sgs~~~ 465 (575)
T KOG4403|consen 447 DHFYNSSMGMSSS-SGSISN 465 (575)
T ss_pred ccccccccccCCC-CCCccc
Confidence 3343333333333 444443
No 439
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.49 E-value=4.3e+02 Score=24.80 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010658 349 LDSLKEQSCEVIRDVEESKNRL 370 (505)
Q Consensus 349 l~~eke~~e~~~~~~~~~~~~l 370 (505)
.++.++++++++.++++....+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443333
No 440
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=24.48 E-value=5.6e+02 Score=23.54 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCCCEEEEccCCCCCCCCcccccccccchhcccCCCceEEEEEe--CCeEeeeecC
Q 010658 108 VHKLILDLVSRLTITKLVMGLSFMIPSAGKSRTAVSGSYFVHHHMPDYCELFIIC--GGKLVSLKGE 172 (505)
Q Consensus 108 ~~~~Ive~a~~~~idlLVmGs~g~~~~~~kr~~~gsvs~~V~k~Ap~~C~V~vV~--kgkl~~~r~a 172 (505)
.++.|.+++++.+.|+|++|++..+... ..-+| ..-++|..+.|.-+. .|++.++|..
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g~~l-----a~rlA--~~L~~~~vsdv~~l~~~~~~~~~~r~~ 138 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIGKQL-----APRVA--ALLGVPQISDVTKLEIDGGDLTVTRPI 138 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCH-----HHHHH--HHhCCCcceeEEEEEEeCCEEEEEEEc
Confidence 3788999999999999999998764331 22222 344555556665543 4677778765
No 441
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=4.5e+02 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLS 371 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~ 371 (505)
+.+..+.++..++..++....+.+.
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~ 81 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLD 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444444
No 442
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=24.36 E-value=2e+02 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=25.8
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEE
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIV 38 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~Iv 38 (505)
++|+++.|.|.. ++.|..-..+.+...|-.+.
T Consensus 44 ~~vii~~D~D~a-G~~a~~~~~~~l~~~g~~~~ 75 (79)
T cd03364 44 KEVILAFDGDEA-GQKAALRALELLLKLGLNVR 75 (79)
T ss_pred CeEEEEECCCHH-HHHHHHHHHHHHHHCCCeEE
Confidence 789999999998 88888877787777665543
No 443
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.33 E-value=1.2e+03 Score=27.20 Aligned_cols=45 Identities=29% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 363 VEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAE 407 (505)
Q Consensus 363 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~ 407 (505)
-|.++=++..+.+....|.+|+.++.+-..=.|.+|+.|...++.
T Consensus 123 fE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ 167 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS 167 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777788888888888888788888876655443
No 444
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=24.31 E-value=99 Score=31.68 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=23.4
Q ss_pred ccccCCCcceEEEEEEC--CcEEEEEEccC
Q 010658 468 RLKCAGDWTNVYRGRLN--HASVAIKTLNN 495 (505)
Q Consensus 468 ~iG~gg~~G~VYkg~L~--g~~VAVK~L~~ 495 (505)
.+|.|. +|.|.|.... |..+|||-+..
T Consensus 99 dlGsGt-cG~V~k~~~rs~~~iiAVK~M~r 127 (391)
T KOG0983|consen 99 DLGSGT-CGQVWKMRFRSTGHIIAVKQMRR 127 (391)
T ss_pred hhcCCC-ccceEEEEEcccceEEEEEeecc
Confidence 579999 9999999883 78999998864
No 445
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.15 E-value=4.8e+02 Score=22.71 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 380 LSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEEL 415 (505)
Q Consensus 380 l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l 415 (505)
++.++......+.++...+...+.+-+.+..+.+.|
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443333333333343333
No 446
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=24.14 E-value=1.6e+02 Score=28.31 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=25.7
Q ss_pred CCCCCCEEEEEecCChHhHHH-HHHHHHHhhhcCCCeEE
Q 010658 1 MDTEEPKVYVAVGNDLQDGYR-TLDWTIRKWKAQSISIV 38 (505)
Q Consensus 1 M~~~~~kIlVAVDgS~~~S~~-AL~WAl~~~~~~g~~Iv 38 (505)
|-..+++|+|+|-||-. +.+ +++.+ +.+.+.|..|.
T Consensus 1 ~~l~~k~IllgVTGsia-a~k~a~~li-r~L~k~G~~V~ 37 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHC-TYDEVMPEI-EKLVDEGAEVT 37 (196)
T ss_pred CCCCCCEEEEEEcCHHH-HHHHHHHHH-HHHHhCcCEEE
Confidence 44568899999999998 888 46655 45555566543
No 447
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.09 E-value=8.4e+02 Score=25.48 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 010658 291 SKINEAREMI 300 (505)
Q Consensus 291 ~~l~ea~~~~ 300 (505)
.+|+++...|
T Consensus 14 q~Lqethr~Y 23 (330)
T PF07851_consen 14 QELQETHRSY 23 (330)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 448
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=24.05 E-value=3.4e+02 Score=28.45 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 338 DVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAK 391 (505)
Q Consensus 338 e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 391 (505)
|+.+|+++.+.+..-+++-..+..+....++.|.++..++..+..-+.-....+
T Consensus 99 EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 99 ELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
No 449
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=23.87 E-value=5.1e+02 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 345 IQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIV 409 (505)
Q Consensus 345 ~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~ 409 (505)
++..+.--|+.-++++.+.+++..+=..++.+.+.-+...++...++.++..+..-++.++..+.
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l 170 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL 170 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
No 450
>PHA03210 serine/threonine kinase US3; Provisional
Probab=23.81 E-value=48 Score=36.18 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.6
Q ss_pred hhccccccccccCCCcceEEEEEE
Q 010658 460 TEDFSERFRLKCAGDWTNVYRGRL 483 (505)
Q Consensus 460 T~~Fs~~~~iG~gg~~G~VYkg~L 483 (505)
.+.|.-...||.|+ ||.||+|.+
T Consensus 147 ~~~Y~ii~~LG~G~-fG~Vyl~~~ 169 (501)
T PHA03210 147 LAHFRVIDDLPAGA-FGKIFICAL 169 (501)
T ss_pred hhccEEEeEecCCC-CcceEEEEE
Confidence 45677778999999 999999876
No 451
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.69 E-value=4.3e+02 Score=26.44 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 344 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQL 386 (505)
Q Consensus 344 e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 386 (505)
++...|..-+.++.+++.++|+..-+|+.+.+++.+++.++..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777788888888888888888888888887766554
No 452
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=23.58 E-value=1e+03 Score=27.22 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=11.0
Q ss_pred hHHHHhhhhHHHHHhHHHHH
Q 010658 327 RADQLESLTKEDVASRMEIQ 346 (505)
Q Consensus 327 ~~~~~e~~~~~e~~~R~e~e 346 (505)
+..+.|.+.++|+..|-++|
T Consensus 154 kLnatEEmLQqellsrtsLE 173 (861)
T KOG1899|consen 154 KLNATEEMLQQELLSRTSLE 173 (861)
T ss_pred hhchHHHHHHHHHHhhhhHH
Confidence 34455555566666665554
No 453
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.46 E-value=3.7e+02 Score=23.44 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 343 MEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSEL 380 (505)
Q Consensus 343 ~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l 380 (505)
+++-+.|+.-.+++..+-.++.+++..+..+.+.+..|
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTAL 41 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555444444444
No 454
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.43 E-value=7.6e+02 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=12.3
Q ss_pred hhHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 010658 326 SRADQLESLTKEDVASRMEIQRDLDSLK 353 (505)
Q Consensus 326 ~~~~~~e~~~~~e~~~R~e~ee~l~~ek 353 (505)
.-|+..|..++.| |+|+...+-+|+
T Consensus 517 dnar~qekQiq~E---k~ELkmd~lrer 541 (641)
T KOG3915|consen 517 DNARAQEKQIQLE---KTELKMDFLRER 541 (641)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455555555554 455544444444
No 455
>PRK10799 metal-binding protein; Provisional
Probab=23.30 E-value=92 Score=30.84 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEE
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILH 41 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllH 41 (505)
-++|+||+|.+.. .+++|+++ ++.+++.|
T Consensus 35 v~~I~~alD~t~~----vi~~A~~~----~~dlIitH 63 (247)
T PRK10799 35 VQKIVTGVTASQA----LLDEAVRL----QADAVIVH 63 (247)
T ss_pred ccEEEEEeCCCHH----HHHHHHHC----CCCEEEEC
Confidence 3799999999887 77888663 66777777
No 456
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=23.25 E-value=6.7e+02 Score=24.04 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=23.0
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeC
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYN 45 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~ 45 (505)
..|+++-+-|.-. |--|. -.+.+.|..|+.||.+.+
T Consensus 3 ~gk~l~LlSGGiD-SpVAa----~lm~krG~~V~~l~f~~~ 38 (197)
T PF02568_consen 3 QGKALALLSGGID-SPVAA----WLMMKRGCEVIALHFDSP 38 (197)
T ss_dssp T-EEEEE-SSCCH-HHHHH----HHHHCBT-EEEEEEEE-T
T ss_pred CceEEEEecCCcc-HHHHH----HHHHHCCCEEEEEEEECC
Confidence 4688999988876 65333 234556999999999744
No 457
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.03 E-value=8.4e+02 Score=25.10 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Q 010658 356 SCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFCK 430 (505)
Q Consensus 356 ~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~~ 430 (505)
+..++.++-++-+++..+|-.++.|++.-....-.+.-|.++|+.-...+.++.+++.+..+.-...-+....++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=23.01 E-value=9.7e+02 Score=26.15 Aligned_cols=34 Identities=6% Similarity=0.043 Sum_probs=26.7
Q ss_pred CCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEe
Q 010658 5 EPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVT 43 (505)
Q Consensus 5 ~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~ 43 (505)
..+++|.+-|-.. |--|+-|+.. .|..|++||+.
T Consensus 177 ~gk~lvllSGGiD-S~va~~~~~k----rG~~v~~l~f~ 210 (482)
T PRK01269 177 QEDVLSLISGGFD-SGVASYMLMR----RGSRVHYCFFN 210 (482)
T ss_pred cCeEEEEEcCCch-HHHHHHHHHH----cCCEEEEEEEe
Confidence 4689999999887 8877766544 37789999995
No 459
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=22.94 E-value=4e+02 Score=21.34 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHH
Q 010658 392 GHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIE 427 (505)
Q Consensus 392 ~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e 427 (505)
....++|+.+.-+..-.++-+..+.++||.+...+.
T Consensus 32 ~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 32 DQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 344455555555666666666677777766555443
No 460
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.88 E-value=1.1e+03 Score=26.18 Aligned_cols=12 Identities=17% Similarity=0.002 Sum_probs=9.8
Q ss_pred CeEEEEEEeeCC
Q 010658 35 ISIVILHVTYNI 46 (505)
Q Consensus 35 ~~IvllHV~~~~ 46 (505)
+...++|+++|.
T Consensus 49 ~~y~ii~~vd~~ 60 (489)
T PF05262_consen 49 GRYYIIHAVDPE 60 (489)
T ss_pred CcEEEEEecCcc
Confidence 468999999875
No 461
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.77 E-value=1.1e+03 Score=26.14 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 357 CEVIRDVEESKNRLSSLIELQSELSN 382 (505)
Q Consensus 357 e~~~~~~~~~~~~l~~~~~~~~~l~~ 382 (505)
+++|+.+-++-.|+-+++.++..|.+
T Consensus 379 ~~~k~r~~~Ls~RiLRv~ikqeilr~ 404 (508)
T KOG3091|consen 379 EEAKNRHVELSHRILRVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444443
No 462
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=22.68 E-value=54 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=25.3
Q ss_pred hccccccccccCCCcceEEEEEE--CCcEEEEEEcc
Q 010658 461 EDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLN 494 (505)
Q Consensus 461 ~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~ 494 (505)
+....-.-||.|+ ||.|-|-.+ .|+..|||++.
T Consensus 46 d~L~~i~elGrGa-yG~vekmrh~~sg~imAvKri~ 80 (282)
T KOG0984|consen 46 DDLVGIEELGRGA-YGVVEKMRHIQSGTIMAVKRIR 80 (282)
T ss_pred hhhhhhhhhcCCc-cchhhheeeccCCeEEEEeeeh
Confidence 3344455789999 998866555 69999999996
No 463
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.67 E-value=1.1e+03 Score=26.38 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=6.4
Q ss_pred ccccHHHHHHHhhc
Q 010658 449 REYAAEDIRLATED 462 (505)
Q Consensus 449 ~~~s~~el~~AT~~ 462 (505)
+.|.-.+|..|...
T Consensus 240 r~~F~~eL~~Ai~e 253 (546)
T KOG0977|consen 240 REYFKNELALAIRE 253 (546)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444455554433
No 464
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=22.64 E-value=7.3e+02 Score=27.55 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCE--------------VIRDVEESKNRLSSLIELQ 377 (505)
Q Consensus 347 e~l~~eke~~e~--------------~~~~~~~~~~~l~~~~~~~ 377 (505)
|+|+-||.++++ ......||.++|+.++.|+
T Consensus 47 eKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl 91 (705)
T KOG0639|consen 47 EKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQL 91 (705)
T ss_pred HHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHH
Confidence 456666766665 1233456667777666553
No 465
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=22.33 E-value=5.6e+02 Score=27.39 Aligned_cols=87 Identities=17% Similarity=0.311 Sum_probs=0.0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHH--------HHH
Q 010658 273 AEQIDSNMSVAERTEFMKSKINEAREMI----RLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKE--------DVA 340 (505)
Q Consensus 273 ~~~~~~~~~eae~~~~l~~~l~ea~~~~----~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~--------e~~ 340 (505)
|.+|.+++-.|+ +.|.++. ++.|+-++.+- .+.|..+.+..+||.+-..-... |++
T Consensus 280 FaKlseALy~ad---------rKAReeV~~ra~~~r~ma~kek---~~kE~kL~elAQkAR~~r~g~~~~~~~ked~e~~ 347 (506)
T KOG2441|consen 280 FAKLSEALYIAD---------RKAREEVRMRAQLERKMAEKEK---EEKEQKLRELAQKAREERGGPQTGAIEKEDREAR 347 (506)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccccccchhHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 341 SRMEIQRDLDSLKEQSCEVIRDVEESKNRLS 371 (505)
Q Consensus 341 ~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~ 371 (505)
.|+|+...-.++.+.-..+.+-.-+...+|+
T Consensus 348 ~R~eiR~~Rrke~~~~~nlsra~~dKrsKl~ 378 (506)
T KOG2441|consen 348 TREEIRRDRRKEREKDRNLSRAAPDKRSKLQ 378 (506)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccchhhhhh
No 466
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.31 E-value=6.3e+02 Score=23.40 Aligned_cols=8 Identities=38% Similarity=0.306 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 010658 280 MSVAERTE 287 (505)
Q Consensus 280 ~~eae~~~ 287 (505)
+...|.++
T Consensus 32 V~vLE~Le 39 (158)
T PF09744_consen 32 VRVLELLE 39 (158)
T ss_pred HHHHHHHH
Confidence 33444443
No 467
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=22.22 E-value=7.8e+02 Score=24.41 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010658 392 GHAEAQLE 399 (505)
Q Consensus 392 ~e~e~~l~ 399 (505)
.++..+..
T Consensus 119 ~~L~~~v~ 126 (250)
T PRK14474 119 KALQQQTG 126 (250)
T ss_pred HHHHHHHH
Confidence 33333333
No 468
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.18 E-value=1.2e+03 Score=26.77 Aligned_cols=19 Identities=5% Similarity=-0.095 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010658 283 AERTEFMKSKINEAREMIR 301 (505)
Q Consensus 283 ae~~~~l~~~l~ea~~~~~ 301 (505)
.+....+=..+-++|..+.
T Consensus 239 P~~Aa~ilN~la~~Yi~~~ 257 (726)
T PRK09841 239 PQLITRILNSIANNYLQQN 257 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667766677777776653
No 469
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=22.09 E-value=1.1e+03 Score=25.89 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 353 KEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEK 400 (505)
Q Consensus 353 ke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~ 400 (505)
..|+++++-+++.-++.+++++.|...|.+++.+++-..-.++.++..
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~ 355 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT 355 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 456667777777778888888888888888888777666666655543
No 470
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.04 E-value=8.5e+02 Score=24.79 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 365 ESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLE 399 (505)
Q Consensus 365 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~ 399 (505)
.+.-.|+.-..+..-|+.|+....-.+..|+.++.
T Consensus 85 Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 85 KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443334445556665555555555444444
No 471
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=21.96 E-value=64 Score=37.67 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=32.4
Q ss_pred cHHHHHHHhhccccccccccCCCcceEEEEEE--CCcEEEEEEccC
Q 010658 452 AAEDIRLATEDFSERFRLKCAGDWTNVYRGRL--NHASVAIKTLNN 495 (505)
Q Consensus 452 s~~el~~AT~~Fs~~~~iG~gg~~G~VYkg~L--~g~~VAVK~L~~ 495 (505)
.++.+-.-|+-|--...||.|. ||.|||+.= .|+.+|||.+..
T Consensus 10 ~~~~lpdp~d~~ei~evig~Gt-ygkv~k~k~~~~~~~aa~kI~~~ 54 (953)
T KOG0587|consen 10 DLSSLPDPADIFEIIEVIGNGT-YGKVYKGRHVKTGQLAAIKIMDP 54 (953)
T ss_pred chhhCCCCCCccEEEEEEeecc-ceeEEEEeeeecCceeeeEeecC
Confidence 3344445566676677899999 999999875 588999999875
No 472
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=21.72 E-value=1.2e+02 Score=29.42 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred cccccccccHHHHHHHhhccccccccccCCCc-ceEEEEEECCcEEEEEE
Q 010658 444 LSCAFREYAAEDIRLATEDFSERFRLKCAGDW-TNVYRGRLNHASVAIKT 492 (505)
Q Consensus 444 ~~~~~~~~s~~el~~AT~~Fs~~~~iG~gg~~-G~VYkg~L~g~~VAVK~ 492 (505)
..+....|++ -+.+|.--..+|.|. - |.|||..++|...|+|.
T Consensus 25 ~gPKL~~F~~-----h~~~I~flefLg~g~-~~~~V~kv~I~g~~YALKl 68 (207)
T PF13095_consen 25 PGPKLEPFTH-----HGDDIEFLEFLGHGS-HDGYVFKVEIDGRIYALKL 68 (207)
T ss_pred CCCCcCCcCC-----CCCcEeeeeecCCCC-ceeEEEEEEECCeEEEEEE
No 473
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.58 E-value=9.7e+02 Score=25.32 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 324 CNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVI 403 (505)
Q Consensus 324 ~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~ 403 (505)
+..-...++.....=...|..+...|......+..-...++ ..|..++.+...+..+|+-++.....
T Consensus 206 s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn-------------~al~~Ri~et~~ak~~Le~ql~~~~~ 272 (384)
T PF03148_consen 206 SNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVN-------------AALRKRIHETQEAKNELEWQLKKTLQ 272 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHH
Q 010658 404 ARAEIVKDIEELRR 417 (505)
Q Consensus 404 ~~~~~~~~~~~l~~ 417 (505)
++..+...++.|++
T Consensus 273 ei~~~e~~i~~L~~ 286 (384)
T PF03148_consen 273 EIAEMEKNIEDLEK 286 (384)
T ss_pred HHHHHHHHHHHHHH
No 474
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=5.2e+02 Score=25.83 Aligned_cols=62 Identities=26% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHH
Q 010658 277 DSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLD 350 (505)
Q Consensus 277 ~~~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~ 350 (505)
+.++.++|.-++=..+-++.+++.+.|+.+-........|++... +++++-+. |+|-|+.|.
T Consensus 117 rr~qRe~E~~eREeRk~ke~~eE~erKkdEeR~~eEae~k~ee~~----RkakEE~a--------rkeheEylk 178 (299)
T KOG3054|consen 117 RRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKEEEKE----RKAKEEEA--------RKEHEEYLK 178 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHhHHHHH----HHHHHHHH--------HHHHHHHHH
No 475
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.48 E-value=4.9e+02 Score=21.83 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 344 EIQRDLDSLKEQSCEVIRDVEESKNRLSSLIE---LQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIV 409 (505)
Q Consensus 344 e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~---~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~ 409 (505)
++-+....-..+++.++.++..+.+.+..... ...+|-.++.+....+.+++.++......+..+.
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.40 E-value=7.2e+02 Score=27.88 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 340 ASRMEIQRDLDSLKEQSCEV--IRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 340 ~~R~e~ee~l~~eke~~e~~--~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~ 417 (505)
+.+..+++.-.+=++...++ +.++++.++++..+......=...++....++.++..++.........+++++.....
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~ 247 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKK 247 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q ss_pred hHhHHHHhHHHHHhhc
Q 010658 418 QRDVLHRRIEFCKEKD 433 (505)
Q Consensus 418 ~r~~~~~~~e~~~~~~ 433 (505)
+-...+++++.....+
T Consensus 248 ~~~~~~~~lk~ap~~D 263 (555)
T TIGR03545 248 QLKADLAELKKAPQND 263 (555)
T ss_pred HHHHHHHHHHhccHhH
No 477
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.37 E-value=1.5e+03 Score=27.42 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHH---HHHHHHHHHHHH-----
Q 010658 287 EFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQ---RDLDSLKEQSCE----- 358 (505)
Q Consensus 287 ~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~e---e~l~~eke~~e~----- 358 (505)
+++-..|++-+ -.+-++.+.++-+-+.+----+.+.+.+|.-|.+..++--++| +.|..|++++++
T Consensus 382 rrlt~tleelq------sss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 382 RRLTGTLEELQ------SSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHHHHHHHHHh------hhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 359 ---------VIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 359 ---------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
.+.+.+....-+..+.....+|..+++.....+......+..-.....+++.++.+...+-.......+.+
T Consensus 456 ~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeL 535 (1195)
T KOG4643|consen 456 TRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEEL 535 (1195)
T ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 010658 430 KE 431 (505)
Q Consensus 430 ~~ 431 (505)
..
T Consensus 536 e~ 537 (1195)
T KOG4643|consen 536 EE 537 (1195)
T ss_pred HH
No 478
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=21.16 E-value=1.6e+02 Score=28.04 Aligned_cols=34 Identities=3% Similarity=0.015 Sum_probs=0.0
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEE
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVIL 40 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~Ivll 40 (505)
++|+|+|-||-. +.++..-.++.+...|..|.++
T Consensus 1 ~~I~lgITGs~~-a~~a~~~ll~~L~~~g~~V~vI 34 (187)
T TIGR02852 1 KRIGFGLTGSHC-TLEAVMPQLEKLVDEGAEVTPI 34 (187)
T ss_pred CEEEEEEecHHH-HHHHHHHHHHHHHhCcCEEEEE
No 479
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.01 E-value=6e+02 Score=22.87 Aligned_cols=74 Identities=24% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhH
Q 010658 353 KEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRI 426 (505)
Q Consensus 353 ke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~ 426 (505)
++....+-+.+-.....+..+.+.+=.++.--.+-...+.+|+.++..+..++.+...+.+++..+=+.+++.+
T Consensus 68 ~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 68 EENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PRK11281 hypothetical protein; Provisional
Probab=20.95 E-value=1.6e+03 Score=27.58 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHH
Q 010658 270 PNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDL 349 (505)
Q Consensus 270 ~~~~~~~~~~~~eae~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l 349 (505)
...-+.+.+.....++.+.|+.++.+|....+...++-+ +..+........-....-..++|....+....-.+.++.|
T Consensus 66 ~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~L 144 (1113)
T PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDL 144 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 350 DSLKEQSCEVIRDVEESKNRLSSLIELQSELS---------------NKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEE 414 (505)
Q Consensus 350 ~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~---------------~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~ 414 (505)
+....++-....+-+.+.+++.....+..++. .+.....-+..-++.+......++..-.+..+-
T Consensus 145 a~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l 224 (1113)
T PRK11281 145 AEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL 224 (1113)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q ss_pred HHHhHhHHHHhHHHH
Q 010658 415 LRRQRDVLHRRIEFC 429 (505)
Q Consensus 415 l~~~r~~~~~~~e~~ 429 (505)
++.++|....+++..
T Consensus 225 ~~~q~d~~~~~~~~~ 239 (1113)
T PRK11281 225 LQKQRDYLTARIQRL 239 (1113)
T ss_pred HHHHHHHHHHHHHHH
No 481
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.95 E-value=6.6e+02 Score=28.46 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSN-------KLQLSTMAKGHAEAQLEKAVIARAEIVKDI 412 (505)
Q Consensus 340 ~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~-------~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~ 412 (505)
+.+.+..+.+.+.+++++++..+.+++..++..+..+...-+. ++.+....+.+++.+++.....-.++..++
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 549 RREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 010658 413 EELR 416 (505)
Q Consensus 413 ~~l~ 416 (505)
+++.
T Consensus 629 ~~~~ 632 (638)
T PRK10636 629 EQML 632 (638)
T ss_pred HHHh
No 482
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=20.88 E-value=6.5e+02 Score=25.05 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred CChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 010658 14 NDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYLGFCG- 92 (505)
Q Consensus 14 gS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~c~- 92 (505)
|++..=+++++||.+|-..-|++ +.|-...+..--.-.++.+++.++.-+. +--...+|+
T Consensus 41 GDp~~M~rtV~lA~e~gV~IGAH------------PgyPDl~gFGRr~m~~~~~e~~a~~lYQ-------iGAL~a~~~a 101 (252)
T COG1540 41 GDPLTMRRTVRLAKENGVAIGAH------------PGYPDLVGFGRREMALSPEELYAQVLYQ-------IGALQAFARA 101 (252)
T ss_pred CCHHHHHHHHHHHHHcCCeeccC------------CCCccccccCccccCCCHHHHHHHHHHH-------HHHHHHHHHh
Q ss_pred -cCccEEEEEec-------CCCChHHHHHHHHHHcCCCEEEEccCC
Q 010658 93 -KVKAEILKVEK-------SDEPVHKLILDLVSRLTITKLVMGLSF 130 (505)
Q Consensus 93 -~v~ve~~vve~-------~~~d~~~~Ive~a~~~~idlLVmGs~g 130 (505)
+..+..+--.| .+...++.|++.+...+-++++||-++
T Consensus 102 ~G~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lag 147 (252)
T COG1540 102 QGGVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAG 147 (252)
T ss_pred cCCeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCc
No 483
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.78 E-value=1.6e+02 Score=27.69 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred CEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEE
Q 010658 6 PKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVIL 40 (505)
Q Consensus 6 ~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~Ivll 40 (505)
++|+|+|-||.. +.+++ +.++.+.+.|..|.++
T Consensus 1 k~I~lgvtGs~~-a~~~~-~ll~~L~~~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAA-DLTSQLTKLGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHH-HHHHH-HHHHHHHHCCCEEEEE
No 484
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.77 E-value=1.1e+03 Score=25.59 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHH--------HHHHHHHHHHHHHHHHH
Q 010658 290 KSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRME--------IQRDLDSLKEQSCEVIR 361 (505)
Q Consensus 290 ~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e--------~ee~l~~eke~~e~~~~ 361 (505)
...|.--+-|.+.-+++.+-.+ +..+.+=-+|-++......+|...-+| +++...+-+..+-.++.
T Consensus 252 nlqLvhR~h~LEEq~reqElra------eE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 252 NLQLVHRYHMLEEQRREQELRA------EESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKS 325 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHHHH
Q 010658 362 DVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIEFC 429 (505)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e~~ 429 (505)
..|+..+..+...+++..|--|+..-..-...+-..|..-.........-+++|+++...+..+.-.|
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>PRK14057 epimerase; Provisional
Probab=20.72 E-value=5.5e+02 Score=25.76 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHH
Q 010658 4 EEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNL 83 (505)
Q Consensus 4 ~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 83 (505)
..+.+-+.|=-.+...-..+.+.+..+- .|.+.-|.|-...+.|+|. +-+-
T Consensus 129 ~~~~~kaGlAlnP~Tp~e~i~~~l~~vD----~VLvMtV~PGfgGQ~Fi~~-------------------------~l~K 179 (254)
T PRK14057 129 GEMPVIRGISLCPATPLDVIIPILSDVE----VIQLLAVNPGYGSKMRSSD-------------------------LHER 179 (254)
T ss_pred ccccceeEEEECCCCCHHHHHHHHHhCC----EEEEEEECCCCCchhccHH-------------------------HHHH
Q ss_pred HHHHHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEEEEcc
Q 010658 84 LSKYLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGL 128 (505)
Q Consensus 84 L~~~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlLVmGs 128 (505)
+.+.+++..+.+..+.+-.. +.+...-+..+.+.|+|.+|+||
T Consensus 180 I~~lr~~~~~~~~~~~IeVD--GGI~~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 180 VAQLLCLLGDKREGKIIVID--GSLTQDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred HHHHHHHHHhcCCCceEEEE--CCCCHHHHHHHHHCCCCEEEECh
No 486
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.72 E-value=7.2e+02 Score=23.49 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 010658 354 EQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAK--GHAEAQLEKAVIARAEIVKDIEELRRQRD 420 (505)
Q Consensus 354 e~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~--~e~e~~l~~~~~~~~~~~~~~~~l~~~r~ 420 (505)
+++..|..+.....++++++++-.+-.+..|++...++ .++..++.+--...+.+..++..++..++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 487
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.66 E-value=3.2e+02 Score=28.92 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010658 325 NSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQ----SELSNKLQLSTMAKGHAEAQLEK 400 (505)
Q Consensus 325 ~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~----~~l~~~~~~~~~~~~e~e~~l~~ 400 (505)
++.+..+..-..+-.+.-.++...+..-+.+++.++....+....+....... ..|.+++.+.+..+.++|..+..
T Consensus 83 ~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~ 162 (370)
T PF02994_consen 83 IKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEE 162 (370)
T ss_dssp -----------------------------------H-------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhH
Q 010658 401 AVIARAEIVKDIEELRRQRDVLHRRI 426 (505)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~r~~~~~~~ 426 (505)
.......+..++..+...-+.+-.+.
T Consensus 163 i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 163 IEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhc
No 488
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.60 E-value=5.4e+02 Score=21.94 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 347 RDLDSLKEQSCEVIRDVEESKNRLSS-------------------LIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAE 407 (505)
Q Consensus 347 e~l~~eke~~e~~~~~~~~~~~~l~~-------------------~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~ 407 (505)
+.++..+..++.-.++.+-..+.|.. ..+-...|+.++...+..++.++.++......+.+
T Consensus 20 ~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 20 QAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 010658 408 IVKDIEEL 415 (505)
Q Consensus 408 ~~~~~~~l 415 (505)
+...+.++
T Consensus 100 ~q~~l~~~ 107 (110)
T TIGR02338 100 LQEKIQEA 107 (110)
T ss_pred HHHHHHHH
No 489
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.58 E-value=9.6e+02 Score=24.87 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 285 RTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVE 364 (505)
Q Consensus 285 ~~~~l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~ 364 (505)
....+..++......+...+.+....-..-..++..+-.+....+....++.+.+--+.+++ ..+.++..++.++.
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~----~~~~~~~~~~~~l~ 213 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL----ELERERAEAQGELG 213 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 010658 365 ESKNRLSSLIELQSELSNKLQLSTMAK-GHAEAQLEKAVIARAEIVKDIEELRRQRDV 421 (505)
Q Consensus 365 ~~~~~l~~~~~~~~~l~~~~~~~~~~~-~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~ 421 (505)
.+...+.....+...+..++....... .+.+.++..+...+..+..+++.++...+.
T Consensus 214 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 214 RLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.56 E-value=9.1e+02 Score=24.57 Aligned_cols=118 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHH
Q 010658 302 LKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQS--CEVIRDVEESKNRLSS----LIE 375 (505)
Q Consensus 302 ~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~--e~~~~~~~~~~~~l~~----~~~ 375 (505)
..++.-..+....+.-|.-.-+-.++-+++|.-..-|-+.++|+|+.-...|-+. --++.+.+++..+-.. ..+
T Consensus 321 ~e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeee 400 (445)
T KOG2891|consen 321 AEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEE 400 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010658 376 LQSELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQR 419 (505)
Q Consensus 376 ~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r 419 (505)
.+..-+++|++.+..+.+-|..|-.|...+.++...-+=+.+.+
T Consensus 401 klk~e~qkikeleek~~eeedal~~all~~qeirl~~~lkek~k 444 (445)
T KOG2891|consen 401 KLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLIAELKEKAK 444 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
No 491
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.55 E-value=4.9e+02 Score=21.41 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 343 MEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELS-----NKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRR 417 (505)
Q Consensus 343 ~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~-----~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~ 417 (505)
+..+..|+....++.....+++.+...+........... ..+.....-+..++..+......+..+..+++..+.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHhHHHHhHHHHHh
Q 010658 418 QRDVLHRRIEFCKE 431 (505)
Q Consensus 418 ~r~~~~~~~e~~~~ 431 (505)
.-..+..+.+.+..
T Consensus 81 ~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 81 ELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 492
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.47 E-value=7.8e+02 Score=23.79 Aligned_cols=138 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 289 MKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKN 368 (505)
Q Consensus 289 l~~~l~ea~~~~~~~r~~~~~~~~~~~kae~~~~~~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~ 368 (505)
|....+.....|+..+..|.+-..|-.+.|...-.-..-++.--..|..- .+|..-+..|+.++....++.+....+..
T Consensus 62 Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~-sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~ 140 (201)
T PF11172_consen 62 LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNA-SLRRASEQKLAETRRRYAQLIKAMRRAES 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhHH
Q 010658 369 RLSSLIELQ--SELSNKLQLSTMAKGHAEAQLEKAVIARAEIVKDIEELRRQRDVLHRRIE 427 (505)
Q Consensus 369 ~l~~~~~~~--~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~e 427 (505)
+++=+.... ..|.-+.--=+.+|.-+..++.........+..+++.--.+-+..+...+
T Consensus 141 km~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l~ 201 (201)
T PF11172_consen 141 KMQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASLE 201 (201)
T ss_pred hcChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 493
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.43 E-value=4.9e+02 Score=27.70 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 346 QRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEKAVIARAE 407 (505)
Q Consensus 346 ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~~~~~~~~ 407 (505)
.+.+...+++++++..+++++.++|.... ...+|+.+...++..+++++..+...+++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.41 E-value=6.2e+02 Score=22.58 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 324 CNSRADQLESLTKEDVASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHAEAQLEK 400 (505)
Q Consensus 324 ~~~~~~~~e~~~~~e~~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~e~~l~~ 400 (505)
+..-.+.++..+..=..-|+++-..+..--.++++...-...++++...+.+........+.....++..|+.+|..
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=20.28 E-value=1.4e+02 Score=29.49 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEE
Q 010658 1 MDTEEPKVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILH 41 (505)
Q Consensus 1 M~~~~~kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllH 41 (505)
...+-.+|+||+|-+.. .+++|+++ ++.+++.|
T Consensus 32 ~~~~v~~I~~alD~t~~----vi~~Ai~~----~~dlIitH 64 (249)
T TIGR00486 32 GNEEVKKVVVAVDASES----VADEAVRL----GADLIITH 64 (249)
T ss_pred CCcccCEEEEEecCCHH----HHHHHHHC----CCCEEEEc
No 496
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.27 E-value=2.9e+02 Score=23.59 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEEecCChHhHHHHHHHHHHhhhcCCCeEEEEEEeeCCCCCcccccCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHH
Q 010658 7 KVYVAVGNDLQDGYRTLDWTIRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSK 86 (505)
Q Consensus 7 kIlVAVDgS~~~S~~AL~WAl~~~~~~g~~IvllHV~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~lL~~ 86 (505)
||||-=.|... +||-|++..-. .+.-|+|.|-.+ -+......++....+ .+.
T Consensus 2 kVLviGsGgRE---HAia~~l~~s~----~v~~v~~aPGN~---G~~~~~~~~~~~~~d------------------~~~ 53 (100)
T PF02844_consen 2 KVLVIGSGGRE---HAIAWKLSQSP----SVEEVYVAPGNP---GTAELGKNVPIDITD------------------PEE 53 (100)
T ss_dssp EEEEEESSHHH---HHHHHHHTTCT----TEEEEEEEE--T---TGGGTSEEE-S-TT-------------------HHH
T ss_pred EEEEECCCHHH---HHHHHHHhcCC----CCCEEEEeCCCH---HHHhhceecCCCCCC------------------HHH
Q ss_pred HHhhhccCccEEEEEecCCCChHHHHHHHHHHcCCCEE
Q 010658 87 YLGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKL 124 (505)
Q Consensus 87 ~~~~c~~v~ve~~vve~~~~d~~~~Ive~a~~~~idlL 124 (505)
...+|...+++..++--+ .....+|++.-.+.||..+
T Consensus 54 l~~~a~~~~idlvvvGPE-~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 54 LADFAKENKIDLVVVGPE-APLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHHHTTESEEEESSH-HHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHcCCCEEEECCh-HHHHHHHHHHHHHCCCcEE
No 497
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=20.21 E-value=1.1e+02 Score=34.06 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHhhccccccccccCCCcceEEEEEE-CCcEEEEEEccCC
Q 010658 456 IRLATEDFSERFRLKCAGDWTNVYRGRL-NHASVAIKTLNNG 496 (505)
Q Consensus 456 l~~AT~~Fs~~~~iG~gg~~G~VYkg~L-~g~~VAVK~L~~~ 496 (505)
+...-..|++. -||.-. .|.||++.| +|..||||+-+++
T Consensus 157 ie~if~~f~~~-piaaAS-laQVhrA~L~~G~~VaVKVQ~P~ 196 (538)
T KOG1235|consen 157 IEDIFSEFDEE-PIAAAS-LAQVHRARLKNGEDVAVKVQHPG 196 (538)
T ss_pred HHHHHHhcCcc-hhhhcc-hhheEEEEecCCCEEEEEecCcC
No 498
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.08 E-value=3.7e+02 Score=25.98 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010658 340 ASRMEIQRDLDSLKEQSCEVIRDVEESKNRLSSLIELQSELSNKLQLSTMAKGHA 394 (505)
Q Consensus 340 ~~R~e~ee~l~~eke~~e~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~e~ 394 (505)
++|+.++++|..=+. +.+...++++-...|....+.+.+|-.+++.+...+..|
T Consensus 115 ~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 115 ERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!