Query 010659
Match_columns 505
No_of_seqs 281 out of 2380
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 4.8E-57 1E-61 490.2 42.5 396 23-465 159-557 (557)
2 KOG1286 Amino acid transporter 100.0 1.4E-42 3.1E-47 371.1 25.9 372 19-464 154-553 (554)
3 PRK11357 frlA putative fructos 100.0 3E-39 6.4E-44 343.5 33.2 308 24-465 126-441 (445)
4 TIGR00909 2A0306 amino acid tr 100.0 5.4E-38 1.2E-42 332.2 34.4 295 26-458 134-429 (429)
5 TIGR00908 2A0305 ethanolamine 100.0 1.9E-37 4.1E-42 329.3 34.4 307 26-465 122-436 (442)
6 PRK15049 L-asparagine permease 100.0 4.7E-37 1E-41 330.4 36.4 250 26-276 145-409 (499)
7 PRK11387 S-methylmethionine tr 100.0 5.9E-37 1.3E-41 328.0 34.7 248 27-276 131-395 (471)
8 PRK10644 arginine:agmatin anti 100.0 1.4E-36 3E-41 323.0 34.2 247 26-275 126-380 (445)
9 PRK10655 potE putrescine trans 100.0 1.2E-36 2.7E-41 322.7 32.8 248 26-276 124-379 (438)
10 PRK10836 lysine transporter; P 100.0 1.7E-36 3.6E-41 325.9 33.3 249 27-276 132-402 (489)
11 PRK10746 putative transport pr 100.0 9E-36 2E-40 317.7 35.0 259 15-276 116-391 (461)
12 PRK10580 proY putative proline 100.0 1.8E-35 3.9E-40 315.4 35.5 249 27-276 125-388 (457)
13 PRK11049 D-alanine/D-serine/gl 100.0 1.6E-35 3.6E-40 316.7 34.3 249 27-276 136-402 (469)
14 PRK10435 cadB lysine/cadaverin 100.0 9.9E-36 2.1E-40 315.5 31.8 242 27-271 123-377 (435)
15 PRK10197 gamma-aminobutyrate t 100.0 2.5E-35 5.5E-40 313.2 34.7 250 25-275 106-370 (446)
16 COG0833 LysP Amino acid transp 100.0 3.3E-36 7.2E-41 312.4 26.4 262 12-276 148-431 (541)
17 COG1113 AnsP Gamma-aminobutyra 100.0 3.1E-36 6.8E-41 306.8 24.3 264 10-276 114-392 (462)
18 TIGR00911 2A0308 L-type amino 100.0 1.1E-34 2.3E-39 313.0 33.7 252 25-276 165-418 (501)
19 PRK10249 phenylalanine transpo 100.0 2E-34 4.3E-39 307.3 33.8 249 26-275 136-397 (458)
20 TIGR01773 GABAperm gamma-amino 100.0 1.8E-34 4E-39 307.3 33.1 257 17-276 120-391 (452)
21 PRK10238 aromatic amino acid t 100.0 4.4E-34 9.6E-39 304.5 34.6 249 27-276 128-389 (456)
22 KOG1287 Amino acid transporter 100.0 9.6E-35 2.1E-39 300.5 27.1 257 24-281 134-393 (479)
23 TIGR00913 2A0310 amino acid pe 100.0 6.3E-34 1.4E-38 305.3 34.3 248 28-276 121-395 (478)
24 TIGR00905 2A0302 transporter, 100.0 5.7E-34 1.2E-38 305.1 33.5 247 26-274 130-385 (473)
25 PRK11021 putative transporter; 100.0 1.6E-33 3.5E-38 296.4 33.7 241 26-273 116-362 (410)
26 TIGR00930 2a30 K-Cl cotranspor 100.0 8.9E-34 1.9E-38 321.6 31.0 251 25-275 203-488 (953)
27 TIGR03810 arg_ornith_anti argi 100.0 8.8E-32 1.9E-36 287.9 33.4 247 26-274 124-381 (468)
28 TIGR00910 2A0307_GadC glutamat 100.0 2.8E-31 6.1E-36 286.0 35.8 256 27-283 125-399 (507)
29 TIGR03813 put_Glu_GABA_T putat 100.0 9.3E-31 2E-35 280.5 34.0 255 27-283 125-396 (474)
30 TIGR00907 2A0304 amino acid pe 100.0 6.3E-31 1.4E-35 282.4 31.5 247 26-273 144-409 (482)
31 COG0531 PotE Amino acid transp 100.0 1.8E-29 3.9E-34 269.1 32.6 252 24-276 133-392 (466)
32 TIGR03428 ureacarb_perm permea 100.0 8.2E-29 1.8E-33 265.5 34.3 249 25-274 144-403 (475)
33 PF00324 AA_permease: Amino ac 100.0 2.6E-31 5.5E-36 285.1 10.0 250 27-276 119-395 (478)
34 PF13520 AA_permease_2: Amino 100.0 2.4E-28 5.1E-33 258.1 25.0 250 25-277 118-379 (426)
35 PRK15238 inner membrane transp 100.0 7.2E-27 1.6E-31 251.8 33.1 244 26-273 136-422 (496)
36 KOG1289 Amino acid transporter 99.9 1.9E-26 4.1E-31 239.3 23.6 250 23-273 175-444 (550)
37 PF13906 AA_permease_C: C-term 99.8 5.7E-20 1.2E-24 133.1 5.6 51 413-463 1-51 (51)
38 TIGR00837 araaP aromatic amino 99.8 3.2E-17 6.9E-22 171.0 23.8 232 26-272 115-355 (381)
39 KOG1288 Amino acid transporter 99.7 1.6E-16 3.4E-21 166.9 20.6 258 17-279 189-478 (945)
40 KOG2082 K+/Cl- cotransporter K 99.7 4E-16 8.7E-21 164.9 19.1 178 98-279 415-601 (1075)
41 TIGR00796 livcs branched-chain 99.5 1.3E-11 2.9E-16 127.6 23.9 238 27-284 113-366 (378)
42 KOG2083 Na+/K+ symporter [Inor 99.2 3.4E-11 7.4E-16 126.4 10.9 253 24-276 147-418 (643)
43 TIGR00912 2A0309 spore germina 99.0 7.8E-08 1.7E-12 99.6 25.1 171 26-203 116-293 (359)
44 TIGR00814 stp serine transport 98.8 2.8E-07 6.2E-12 96.5 20.9 177 27-207 124-312 (397)
45 PF03222 Trp_Tyr_perm: Tryptop 98.7 4.7E-06 1E-10 87.4 24.5 175 25-203 120-302 (394)
46 PRK10483 tryptophan permease; 98.4 3.8E-05 8.3E-10 80.5 22.3 234 26-272 128-369 (414)
47 PRK09664 tryptophan permease T 98.4 9E-05 2E-09 77.7 22.8 237 25-272 126-370 (415)
48 PRK15132 tyrosine transporter 98.3 0.0002 4.3E-09 75.2 24.9 173 27-206 122-302 (403)
49 COG0814 SdaC Amino acid permea 98.3 0.00026 5.7E-09 74.8 25.6 148 4-155 108-256 (415)
50 PRK13629 threonine/serine tran 98.0 0.00073 1.6E-08 71.2 20.7 184 25-208 138-348 (443)
51 PF03845 Spore_permease: Spore 97.8 0.004 8.7E-08 63.4 21.6 179 17-204 107-290 (320)
52 PHA02764 hypothetical protein; 97.5 0.0046 1E-07 61.5 16.5 103 95-226 183-285 (399)
53 COG3949 Uncharacterized membra 97.1 0.17 3.6E-06 51.1 22.5 88 107-197 193-280 (349)
54 PF05525 Branch_AA_trans: Bran 96.9 0.24 5.2E-06 52.3 22.6 215 26-260 119-345 (427)
55 PLN03074 auxin influx permease 96.8 0.2 4.4E-06 53.9 21.3 56 91-147 231-286 (473)
56 PF02705 K_trans: K+ potassium 96.7 0.56 1.2E-05 50.8 23.9 235 18-266 125-370 (534)
57 KOG1304 Amino acid transporter 96.7 0.24 5.2E-06 52.3 20.1 110 34-148 186-298 (449)
58 PRK15433 branched-chain amino 96.4 0.93 2E-05 48.1 22.7 222 27-272 124-364 (439)
59 PRK11375 allantoin permease; P 96.1 2.4 5.1E-05 45.9 24.4 197 31-245 164-367 (484)
60 KOG1303 Amino acid transporter 96.0 0.37 8.1E-06 51.2 17.5 141 41-191 179-320 (437)
61 PF01566 Nramp: Natural resist 95.8 1.1 2.4E-05 46.4 20.0 46 161-206 239-285 (358)
62 PF01490 Aa_trans: Transmembra 95.6 0.011 2.3E-07 62.1 3.8 62 90-151 189-252 (409)
63 COG1457 CodB Purine-cytosine p 95.3 4.8 0.0001 42.8 24.1 92 27-123 132-224 (442)
64 PTZ00206 amino acid transporte 95.2 2.4 5.1E-05 45.7 20.3 59 94-152 257-316 (467)
65 COG0733 Na+-dependent transpor 95.1 4.6 9.9E-05 42.7 21.3 163 30-194 149-323 (439)
66 PLN00151 potassium transporter 94.8 2.9 6.2E-05 47.4 19.7 226 18-261 266-508 (852)
67 PLN00149 potassium transporter 94.7 7.1 0.00015 44.2 22.5 220 26-260 199-434 (779)
68 PLN00148 potassium transporter 94.6 4.5 9.7E-05 45.8 20.7 225 18-260 189-430 (785)
69 TIGR00800 ncs1 NCS1 nucleoside 94.6 7.5 0.00016 41.5 24.9 102 40-143 155-257 (442)
70 TIGR00794 kup potassium uptake 94.3 9.5 0.00021 42.8 22.3 228 18-263 160-404 (688)
71 PF01235 Na_Ala_symp: Sodium:a 94.3 3.4 7.4E-05 43.6 18.0 180 26-206 140-338 (416)
72 COG1114 BrnQ Branched-chain am 94.0 9.3 0.0002 40.1 24.2 234 25-275 120-366 (431)
73 PLN00150 potassium ion transpo 94.0 4.5 9.7E-05 45.7 19.0 226 18-261 206-448 (779)
74 TIGR02119 panF sodium/pantothe 93.9 11 0.00023 40.6 29.3 93 107-201 250-345 (471)
75 PRK10745 trkD potassium transp 93.8 6 0.00013 43.7 19.2 227 18-263 136-378 (622)
76 KOG1286 Amino acid transporter 93.4 13 0.00028 40.9 21.2 50 25-74 155-204 (554)
77 TIGR00813 sss transporter, SSS 93.0 13 0.00029 38.9 22.4 83 119-202 229-322 (407)
78 TIGR00835 agcS amino acid carr 92.9 15 0.00032 39.0 22.7 178 27-205 168-364 (425)
79 PRK09442 panF sodium/panthothe 92.7 17 0.00037 39.2 30.7 92 107-200 251-345 (483)
80 COG1115 AlsT Na+/alanine sympo 92.2 18 0.00038 38.4 21.7 182 25-206 183-382 (452)
81 PRK11017 codB cytosine permeas 91.7 20 0.00042 37.9 28.6 101 32-138 127-228 (404)
82 KOG1305 Amino acid transporter 91.4 13 0.00028 39.3 17.6 56 93-148 194-250 (411)
83 COG0591 PutP Na+/proline sympo 90.3 30 0.00066 37.5 22.3 44 158-201 309-352 (493)
84 TIGR02358 thia_cytX probable h 88.9 33 0.00071 35.9 25.4 109 34-151 121-230 (386)
85 PRK10484 putative transporter; 87.2 50 0.0011 36.1 33.4 82 119-201 270-354 (523)
86 PRK15419 proline:sodium sympor 87.0 50 0.0011 35.9 23.9 42 160-201 311-352 (502)
87 COG1953 FUI1 Cytosine/uracil/t 85.0 61 0.0013 35.0 21.7 122 27-150 172-297 (497)
88 PF00474 SSF: Sodium:solute sy 84.6 9.2 0.0002 40.1 11.3 49 160-211 278-326 (406)
89 COG1914 MntH Mn2+ and Fe2+ tra 82.9 69 0.0015 34.0 22.8 40 161-200 269-311 (416)
90 COG3158 Kup K+ transporter [In 82.5 81 0.0018 34.5 19.1 52 18-72 141-192 (627)
91 TIGR02121 Na_Pro_sym sodium/pr 81.9 81 0.0018 34.1 29.0 43 159-201 303-345 (487)
92 TIGR02711 symport_actP cation/ 79.4 1E+02 0.0023 33.9 24.8 80 119-199 287-379 (549)
93 PF02028 BCCT: BCCT family tra 79.1 1E+02 0.0022 33.5 23.0 87 177-272 392-483 (485)
94 PRK12488 acetate permease; Pro 77.2 1.2E+02 0.0026 33.4 24.4 26 40-65 196-221 (549)
95 PTZ00206 amino acid transporte 72.1 68 0.0015 34.5 13.4 57 160-216 120-176 (467)
96 PF05297 Herpes_LMP1: Herpesvi 71.3 1.3 2.9E-05 43.5 0.0 28 431-458 156-185 (381)
97 PRK00701 manganese transport p 70.8 1.5E+02 0.0033 31.6 22.6 36 161-196 294-329 (439)
98 PF00209 SNF: Sodium:neurotran 69.1 92 0.002 34.0 13.8 102 40-143 195-299 (523)
99 PRK09950 putative transporter; 62.4 2.4E+02 0.0052 30.8 21.9 95 175-274 400-499 (506)
100 PF02990 EMP70: Endomembrane p 60.5 2.6E+02 0.0056 30.6 19.6 35 247-281 368-403 (521)
101 PRK09395 actP acetate permease 60.3 2.7E+02 0.0058 30.7 25.9 27 39-65 197-223 (551)
102 KOG3660 Sodium-neurotransmitte 53.8 2.8E+02 0.0061 31.2 14.0 53 19-71 209-262 (629)
103 COG3086 RseC Positive regulato 52.3 21 0.00046 31.8 4.0 62 414-475 77-139 (150)
104 TIGR03648 Na_symport_lg probab 50.8 3.8E+02 0.0081 29.5 22.7 30 172-201 364-393 (552)
105 PF02133 Transp_cyt_pur: Perme 49.1 28 0.0006 36.9 5.3 29 34-62 146-174 (440)
106 COG4147 DhlC Predicted symport 45.1 4.4E+02 0.0095 28.6 17.5 211 30-253 160-420 (529)
107 COG1292 BetT Choline-glycine b 41.9 5.1E+02 0.011 28.5 21.0 93 175-275 403-499 (537)
108 PF05961 Chordopox_A13L: Chord 32.7 34 0.00073 26.3 1.9 17 445-461 10-26 (68)
109 KOG3659 Sodium-neurotransmitte 30.3 2E+02 0.0044 31.9 8.0 110 26-135 255-366 (629)
110 PTZ00359 hypothetical protein; 29.0 2.8E+02 0.006 29.2 8.3 18 446-463 364-381 (443)
111 PHA03049 IMV membrane protein; 27.6 54 0.0012 25.1 2.3 17 445-461 10-26 (68)
112 PRK00968 tetrahydromethanopter 26.6 1.6E+02 0.0035 28.1 5.7 31 116-146 204-235 (240)
113 PRK09928 choline transport pro 26.0 1E+03 0.022 27.1 20.8 92 176-271 408-502 (679)
114 KOG1278 Endosomal membrane pro 25.8 7.1E+02 0.015 27.5 11.0 199 250-479 268-479 (628)
115 COG0342 SecD Preprotein transl 25.4 9.2E+02 0.02 26.4 13.6 75 27-124 350-424 (506)
116 PF05767 Pox_A14: Poxvirus vir 24.3 2.8E+02 0.0061 22.7 5.9 19 444-462 54-72 (92)
117 PF06942 GlpM: GlpM protein; 22.4 2E+02 0.0044 24.3 4.9 44 413-456 23-69 (107)
118 COG4060 MtrD Tetrahydromethano 22.1 1.8E+02 0.004 26.7 5.0 31 116-146 194-225 (230)
119 PF11174 DUF2970: Protein of u 22.0 2.4E+02 0.0052 20.9 4.8 44 97-143 3-46 (56)
120 PF05915 DUF872: Eukaryotic pr 21.8 1.8E+02 0.0039 24.9 4.8 20 346-365 41-60 (115)
121 COG5438 Predicted multitransme 21.5 9.4E+02 0.02 25.1 11.7 41 117-157 240-283 (385)
122 PF03169 OPT: OPT oligopeptide 21.2 1.2E+03 0.025 26.1 15.0 55 97-151 435-491 (624)
123 PF12805 FUSC-like: FUSC-like 20.3 7.3E+02 0.016 24.5 9.6 39 421-459 50-89 (284)
124 PRK14740 kdbF potassium-transp 20.2 1.7E+02 0.0037 18.5 3.0 22 437-460 2-23 (29)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=4.8e-57 Score=490.20 Aligned_cols=396 Identities=38% Similarity=0.660 Sum_probs=309.9
Q ss_pred cchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCc--CCCCCCCCchhHHHHHHHH
Q 010659 23 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY--ELPTGYFPFGVNGMLAGSA 100 (505)
Q Consensus 23 ~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~--~~~~~~~p~g~~gil~g~~ 100 (505)
.+.++++++++++++.+|++|+|.++|+|++++++|+++++++++.|+.+.+.+||... .+.+++.|+|+.|++.|+.
T Consensus 159 ~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~ 238 (557)
T TIGR00906 159 EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAA 238 (557)
T ss_pred ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999887766666521 2334678889999999999
Q ss_pred HHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhchhHHHHHHH
Q 010659 101 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 180 (505)
Q Consensus 101 ~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~ 180 (505)
.++|+|.|||.+++++||+|||+||+|||++.++.+++++|++.++++++++|+++++.++|+..+++..+.+++..++.
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~ 318 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVA 318 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 010659 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF 260 (505)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y 260 (505)
++++.+.+++.++.+++++|++|+|||||.+|++|+|+|+|+++|++|+++.++++.++.++.+++.+.++.+++++++|
T Consensus 319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y 398 (557)
T TIGR00906 319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCcccccccccccccc
Q 010659 261 TMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDIL 340 (505)
Q Consensus 261 ~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (505)
.+++++++++|++++...+ + .+| ++|+++. ++.|+.+. ..++ . .
T Consensus 399 ~lv~~~~l~lR~~~~~~~~-~--------------~~~----~~~~~~~------~~~~~~~~----~~~~------~-~ 442 (557)
T TIGR00906 399 SLVAACVLILRYQPGLVYG-Q--------------AKD----TDEKDTL------DSWVPFTS----KSES------Q-S 442 (557)
T ss_pred HHHHHHHHHhhcccccccc-c--------------ccc----ccccccc------cccccccc----cccc------c-c
Confidence 9999999999998654210 0 000 0110000 00011000 0000 0 0
Q ss_pred cccccccchhhhHHHHHHHHHHHH-HHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcccccccc
Q 010659 341 NEENRRTVAGWTIMFTCIGVFVLT-YAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVP 419 (505)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P 419 (505)
+....+. .++..+++.++.. ........ +++.+.+.++.+++.++.+..+..++|.+ .+++||||++|
T Consensus 443 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~f~~p~~p 511 (557)
T TIGR00906 443 EGFSLRT----LFSGLILGLSILTTYGRAAIAE-EAWSIALLTLFLVLFLLVVLTIWRQPQNK------QKVAFKVPLVP 511 (557)
T ss_pred cchhHHH----HHHHHHHHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCCCCCCch
Confidence 0000000 0111112221111 11111112 33344444444444444444444444432 35799999999
Q ss_pred hhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhccccccc
Q 010659 420 LLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSL 465 (505)
Q Consensus 420 ~~P~~~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~yg~~~s~~ 465 (505)
++|++++++|+|||.+|++.||+||.+|+++|+++||+||+|||++
T Consensus 512 ~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 512 FLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 9999999999999999999999999999999999999999999974
No 2
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=371.10 Aligned_cols=372 Identities=35% Similarity=0.546 Sum_probs=291.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---cCCCCCCCCchhHH
Q 010659 19 PGLGIIVDPCAAILVLIVTGLLC-VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG---YELPTGYFPFGVNG 94 (505)
Q Consensus 19 p~~~~~~~l~ai~il~l~~~in~-~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~---~~~~~~~~p~g~~g 94 (505)
|....+.+++++++++.++.+-. .++|.+..++.+++++.++++.+++++|....+..||.. +.++++|.|+|+.|
T Consensus 154 ~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~G 233 (554)
T KOG1286|consen 154 NPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKG 233 (554)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcce
Confidence 33455678888888777777766 788999999999999999999999999998887767654 44567899999999
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCcHHHHHH-Hhc
Q 010659 95 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFA-SHG 171 (505)
Q Consensus 95 il~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~--l~~~~p~~~a~~-~~g 171 (505)
++++++.++|+|.|+|.++..+||+|||+|++|+|+..++.+++++|++.++.+++++||++ ++++++.++.|. ..+
T Consensus 234 v~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~ 313 (554)
T KOG1286|consen 234 VLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG 313 (554)
T ss_pred eeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 788887777777 555
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcH---
Q 010659 172 MHWASY---VITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV--- 245 (505)
Q Consensus 172 ~~~~~~---iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~--- 245 (505)
..+... ++++++++++.+++|+.+++++|.+|+||+||++||+|+++||+ |+|++|++++++++++..+..+.
T Consensus 314 ~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~ 392 (554)
T KOG1286|consen 314 NAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAA 392 (554)
T ss_pred ccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccc
Confidence 555555 99999999999999999999999999999999999999999999 99999999999999998888876
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC------CCCCCccccccchhhhcccccccccCCCcccccCcccc
Q 010659 246 ---SALAGMVSVGTLLAFTMVAISVLILRYVPPDEV------PVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRE 316 (505)
Q Consensus 246 ---~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (505)
++|.++.++++++.|.+++++++++||..+++. |||++.+
T Consensus 393 ~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~------------------------------- 441 (554)
T KOG1286|consen 393 TVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTG------------------------------- 441 (554)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCC-------------------------------
Confidence 999999999999999999999999999765532 1110000
Q ss_pred cchhhhhcCCcccccccccccccccccccccchhhhHHHHHHHHHHHH-HHhhhccc--chhhHHHHHHHHHHHHHHHHH
Q 010659 317 TEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLT-YAASDLSL--PRLLQLTLCGIGGALLLCGLI 393 (505)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 393 (505)
.... +....+++...... +....... ++........++..+.++..+
T Consensus 442 ---------------------------~~gs---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i 491 (554)
T KOG1286|consen 442 ---------------------------PYGS---YYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYI 491 (554)
T ss_pred ---------------------------Cchh---HHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0111 11112222111111 11111111 222222222333322322222
Q ss_pred hhcccccCcccccCCCCCcccccccchhhHHHHHHHHHHHhcCChhHHH--HHHHHHHHHHHHHHh-hcccccc
Q 010659 394 VLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWA--RVSVWLIIGVLVYVF-YGRTHSS 464 (505)
Q Consensus 394 ~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~~i~~n~~l~~~l~~~t~~--~~~vw~~iG~~iY~~-yg~~~s~ 464 (505)
..-..+|++. . ++|+.|++++..|.++|.+++..+|. |+.+|...|+..|+. |+++|++
T Consensus 492 ~~~i~~~~~~--------~----~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 492 GYKIYAKPTN--------T----LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred HHheeecccc--------c----ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 2222222221 0 78999999999999999999999999 999999999999987 9999985
No 3
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=3e-39 Score=343.49 Aligned_cols=308 Identities=21% Similarity=0.302 Sum_probs=258.6
Q ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCch-hHHHHHHHHHH
Q 010659 24 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFG-VNGMLAGSATV 102 (505)
Q Consensus 24 ~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g-~~gil~g~~~~ 102 (505)
....++++++++++.+|++|+|.++++|++++++|++.++++++.++.....+++.+..... ....+ +.+++.++..+
T Consensus 126 ~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~ 204 (445)
T PRK11357 126 LGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISAT 204 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHH
Confidence 34567788888899999999999999999999999998888888777544334443211111 11112 56788899999
Q ss_pred HHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHh--chhHHHHHH
Q 010659 103 FFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASH--GMHWASYVI 179 (505)
Q Consensus 103 ~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~--g~~~~~~iv 179 (505)
+|+|.|||.+++++||+|||+||+|||++.++.+++++|++.+.+..+..|.+++. .++|+.++++.. .+++...++
T Consensus 205 ~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~ 284 (445)
T PRK11357 205 SWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFV 284 (445)
T ss_pred HHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888763 456888887764 455666777
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 010659 180 TIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLA 259 (505)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~ 259 (505)
.++++++.+++.++.+.+.+|++|+|||||.+|++|+|+|+|+|+|++|++++++++.++.+..+++.+.++.+...++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (445)
T PRK11357 285 AITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFK 364 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccc
Q 010659 260 FTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDI 339 (505)
Q Consensus 260 y~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (505)
|.+...+++++|++++.
T Consensus 365 ~~~~~~a~i~lr~~~~~--------------------------------------------------------------- 381 (445)
T PRK11357 365 NTLTFGSIIWCRKRDDY--------------------------------------------------------------- 381 (445)
T ss_pred HHHHHHHHheeecCCCC---------------------------------------------------------------
Confidence 99999999888765322
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcccccccc
Q 010659 340 LNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVP 419 (505)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P 419 (505)
+++||+|+.|
T Consensus 382 ----------------------------------------------------------------------~~~~k~p~~~ 391 (445)
T PRK11357 382 ----------------------------------------------------------------------KPLWRTPAFG 391 (445)
T ss_pred ----------------------------------------------------------------------CCCcccCCch
Confidence 1368999999
Q ss_pred hhhHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHhhccccccc
Q 010659 420 LLPIACILINVYLLI----NLGSATWARVSVWLIIGVLVYVFYGRTHSSL 465 (505)
Q Consensus 420 ~~P~~~i~~n~~l~~----~l~~~t~~~~~vw~~iG~~iY~~yg~~~s~~ 465 (505)
++|++++..+++++. +.+..+|+...+|+.+|+++|+.|.+|++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 441 (445)
T PRK11357 392 LMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQL 441 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhhhh
Confidence 999999999998874 3366778888999999999999888776654
No 4
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=5.4e-38 Score=332.17 Aligned_cols=295 Identities=38% Similarity=0.646 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA 105 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa 105 (505)
.+.+++++++++.+|++|+|..+|+|.+++.++++.++++++.++.+.+.+++++ +.|.++.++..++...+|+
T Consensus 134 ~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a 207 (429)
T TIGR00909 134 NLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTP------FMPMGFGGVGAATALVFFA 207 (429)
T ss_pred cHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC------CCCCcHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999998887777776554444432 3345677889999999999
Q ss_pred hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhchhHHHHHHHHHHH
Q 010659 106 FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAV 184 (505)
Q Consensus 106 f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~~~~~~iv~~~~~ 184 (505)
|.|+|.+++++||+|||+|++||+++.+..+++++|++.++......|.+++ +.+.|+..++++.+++++..++.++++
T Consensus 208 f~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 287 (429)
T TIGR00909 208 FIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAV 287 (429)
T ss_pred HhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888888776 345688888888899999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 010659 185 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 264 (505)
Q Consensus 185 ~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y~~v~ 264 (505)
++.+++.++.+.+.+|++++|||||.+|++|+|+|+|+++|++|++++++++.++....+++.+.++.+++.++.|.+++
T Consensus 288 ~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 367 (429)
T TIGR00909 288 FSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVN 367 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887777899999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCcccccccccccccccccc
Q 010659 265 ISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEEN 344 (505)
Q Consensus 265 ~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
++++++|+|+|+.
T Consensus 368 ~a~~~lr~~~~~~------------------------------------------------------------------- 380 (429)
T TIGR00909 368 VAVIILRRRRPDI------------------------------------------------------------------- 380 (429)
T ss_pred HHHHHHHhhcCCC-------------------------------------------------------------------
Confidence 9999999877651
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcccccccchhhHH
Q 010659 345 RRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIA 424 (505)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~ 424 (505)
+++||.|..|+++.+
T Consensus 381 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 395 (429)
T TIGR00909 381 -----------------------------------------------------------------QRAFRCPLVPVLPVL 395 (429)
T ss_pred -----------------------------------------------------------------CCCCCCCcchHHHHH
Confidence 236888999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhh
Q 010659 425 CILINVYLLINLGSATWARVSVWLIIGVLVYVFY 458 (505)
Q Consensus 425 ~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~y 458 (505)
.+..+.+++...++.++....+|.++|.++|..|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 396 VVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999765
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.9e-37 Score=329.34 Aligned_cols=307 Identities=21% Similarity=0.309 Sum_probs=253.2
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--cCCCCCCCCchhHHHHHHHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPTGYFPFGVNGMLAGSATVF 103 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~--~~~~~~~~p~g~~gil~g~~~~~ 103 (505)
..++++++++++.+|++|+|.++++|.++++++++.+++++..+..+.+..++.. ..+.+++.|.++.+++.++..++
T Consensus 122 ~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00908 122 WLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAI 201 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHH
Confidence 3567788888999999999999999999999998876665544332222222211 11223456667888999999999
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhch--hHHHHHHH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGM--HWASYVIT 180 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~--~~~~~iv~ 180 (505)
|+|.|+|.+++++||+|||+||+|||++.++.++.++|+.......+..|.+++ +.++|+.+++++..+ .+...++.
T Consensus 202 ~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~ 281 (442)
T TIGR00908 202 WFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVN 281 (442)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999999999999999999888777766776666 345688888887633 45667777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 010659 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF 260 (505)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y 260 (505)
+..+++.+++.++.+++.+|++|+|||||.+|++|+|+| |+|+|++|++++++++.++.+..+.+.+.++.+++.++.|
T Consensus 282 ~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y 360 (442)
T TIGR00908 282 LVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISY 360 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999 6699999999999999887777777788899999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCcccccccccccccc
Q 010659 261 TMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDIL 340 (505)
Q Consensus 261 ~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (505)
.+.+++++++|+++|+.
T Consensus 361 ~~~~~a~i~lr~~~p~~--------------------------------------------------------------- 377 (442)
T TIGR00908 361 VLSMAAHFTLRIRRPDM--------------------------------------------------------------- 377 (442)
T ss_pred HHHHHHHHHHHhcCCCC---------------------------------------------------------------
Confidence 99999999999877651
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcccccccch
Q 010659 341 NEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPL 420 (505)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~ 420 (505)
+++||+|+.|+
T Consensus 378 ---------------------------------------------------------------------~rp~~~p~~~~ 388 (442)
T TIGR00908 378 ---------------------------------------------------------------------ERPYRTPGGIL 388 (442)
T ss_pred ---------------------------------------------------------------------CCCccCCCcch
Confidence 24789999999
Q ss_pred hhHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHhhccccccc
Q 010659 421 LPIACILINVYLLINL---GSATWARVSVWLIIGVLVYVFYGRTHSSL 465 (505)
Q Consensus 421 ~P~~~i~~n~~l~~~l---~~~t~~~~~vw~~iG~~iY~~yg~~~s~~ 465 (505)
.|.++++.+++++... ++..+....++.+++.+.|+.|.++|.+.
T Consensus 389 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 389 TPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 9999999998887653 66677777888888888999998766654
No 6
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=4.7e-37 Score=330.41 Aligned_cols=250 Identities=22% Similarity=0.337 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c-------CCCCcCCCCCCCCchhHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK-T-------GWSGYELPTGYFPFGVNGMLA 97 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~-~-------~~~~~~~~~~~~p~g~~gil~ 97 (505)
.+++++++++++++|++|+|.++++|++++++|++.++++++.++..... + ++....+++++.|.|+.+++.
T Consensus 145 ~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~ 224 (499)
T PRK15049 145 WVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALV 224 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHH
Confidence 34678888899999999999999999999999999988887777653211 1 111122345667788888888
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHH
Q 010659 98 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWAS 176 (505)
Q Consensus 98 g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~ 176 (505)
++..++|+|.|+|.+++++||+|||+|++|||++.++..++++|++........+|++++. .++|+..+++..+.+++.
T Consensus 225 ~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~ 304 (499)
T PRK15049 225 LIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIG 304 (499)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHH
Confidence 8889999999999999999999999999999999999999999999999999999998874 457999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHHH
Q 010659 177 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAG 250 (505)
Q Consensus 177 ~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~~ 250 (505)
.++.+.++++.+++.++.+++.+|++|+|||||.+|++|+|+|++ ++|++|++++++++.+..++. .++.+.+
T Consensus 305 ~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~-~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~ 383 (499)
T PRK15049 305 SIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQ-HVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLN 383 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999965 999999999888765432221 2677999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 251 MVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 251 l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
+.+++.++.|.+++++.+++|++.++
T Consensus 384 ~~~~~~li~y~~~~~~~l~~R~~~~~ 409 (499)
T PRK15049 384 FASLGIIASWAFIIVCQMRLRKAIKE 409 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999876543
No 7
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=5.9e-37 Score=328.00 Aligned_cols=248 Identities=20% Similarity=0.348 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------ccC----CCCcCCCCCCCCchhHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF------KTG----WSGYELPTGYFPFGVNGML 96 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~------~~~----~~~~~~~~~~~p~g~~gil 96 (505)
..+++++++++.+|++|+|..+++|.+++++|++.++.+++.++.... .++ ++++ +.+++.|.+..+++
T Consensus 131 ~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~ 209 (471)
T PRK11387 131 PWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL-TAEGWFPHGGLPIL 209 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc-CCCCCCcccHHHHH
Confidence 345666778899999999999999999999999998888777654211 111 1111 12345566777889
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHH
Q 010659 97 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWA 175 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~ 175 (505)
.++..++|+|.|||.+++++||+|||+||+|||++.++.+++++|++..+.+.+..|+++.+ .++|+..++++.+++++
T Consensus 210 ~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~ 289 (471)
T PRK11387 210 MTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYA 289 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchH
Confidence 99999999999999999999999999999999999999999999999999999999988764 46799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHH
Q 010659 176 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALA 249 (505)
Q Consensus 176 ~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~ 249 (505)
..++.++++++.+++.++.+++.+|++|+|||||.+|++|+|+|++ ++|++|+++.++++.+..+.. .++.+.
T Consensus 290 ~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~ 368 (471)
T PRK11387 290 ADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALS 368 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 999999998876654433221 134578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 250 GMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 250 ~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
++.++..++.|++++++.+++|+++++
T Consensus 369 ~l~~~~~li~y~~~~~~~i~lr~~~~~ 395 (471)
T PRK11387 369 AISGFAVVAVWLSICASHFMFRRRHLR 395 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999987765
No 8
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1.4e-36 Score=323.01 Aligned_cols=247 Identities=21% Similarity=0.305 Sum_probs=210.2
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA 105 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa 105 (505)
.+++++++++++.+|++|+|..+++|++.+++|++.++++++.++...+.+++.+..+..+ ..++.++..++..++|+
T Consensus 126 ~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a 203 (445)
T PRK10644 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWS 203 (445)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccc--cchHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999888888777765433323221111111 12456777888899999
Q ss_pred hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHHHHHHHHHH
Q 010659 106 FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAV 184 (505)
Q Consensus 106 f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~~iv~~~~~ 184 (505)
|.|||.+++++||+|||+|++|||++.++.+++++|++..++..+..|++++. .+.|+.+++++..++++..++.++++
T Consensus 204 f~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~ 283 (445)
T PRK10644 204 FIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAA 283 (445)
T ss_pred HHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988764 46789998988888888888888889
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHH
Q 010659 185 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTL 257 (505)
Q Consensus 185 ~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-------~~~~l~~l~s~~~l 257 (505)
++.+++.++.+...+|++|+|||||.+|++|+|+||+ ++|++|++++++++.++.+.. .++.+.++.+++.+
T Consensus 284 ~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~l 362 (445)
T PRK10644 284 AGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA-GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTL 362 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 999999999999987765432 37778999999999
Q ss_pred HHHHHHHHHHHHhhccCC
Q 010659 258 LAFTMVAISVLILRYVPP 275 (505)
Q Consensus 258 i~y~~v~~a~i~lR~~~~ 275 (505)
++|.+++++.+++|+|++
T Consensus 363 i~y~~~~~~~~~l~~~~~ 380 (445)
T PRK10644 363 VPYLYTCAALLLLGHGHF 380 (445)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999999999987754
No 9
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.2e-36 Score=322.71 Aligned_cols=248 Identities=18% Similarity=0.323 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA 105 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa 105 (505)
.+++++++++++.+|++|+|.++++|++.+..+++.++++++.++...+.+++.+..++.+. + .+.++..++..++|+
T Consensus 124 ~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~a 201 (438)
T PRK10655 124 CLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHL-P-FFSAVGSSIAMTLWA 201 (438)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCC-c-hHHHHHHHHHHHHHH
Confidence 35567777889999999999999999999999988888887777655433333211111111 1 235788888899999
Q ss_pred hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHHHHHHHHHH
Q 010659 106 FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAV 184 (505)
Q Consensus 106 f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~~iv~~~~~ 184 (505)
|.|||.+++++||+|||+||+|||++.+..+++++|++......+..|++++. .++|+.+++++..++++..++.++++
T Consensus 202 f~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~ 281 (438)
T PRK10655 202 FLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMV 281 (438)
T ss_pred HhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888888763 46788888888888888888888999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHH
Q 010659 185 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTL 257 (505)
Q Consensus 185 ~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-------~~~~l~~l~s~~~l 257 (505)
++.+++.++.+.+.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.++.+.. .++.+.++.++..+
T Consensus 282 is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~ 360 (438)
T PRK10655 282 MSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNI 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 999999999998877655432 46789999999999
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 010659 258 LAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 258 i~y~~v~~a~i~lR~~~~~ 276 (505)
+.|.+++++.+++|+|+|+
T Consensus 361 i~y~~~~~~~~~lr~~~~~ 379 (438)
T PRK10655 361 IPYILSMAALVIIQKVANV 379 (438)
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 9999999999999988765
No 10
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.7e-36 Score=325.92 Aligned_cols=249 Identities=20% Similarity=0.299 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----c---cCCCCcCCCCCCCCchhHHHHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF----K---TGWSGYELPTGYFPFGVNGMLAGS 99 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~----~---~~~~~~~~~~~~~p~g~~gil~g~ 99 (505)
.++.+++++++.+|++|+|..+++|+++++.|+..++.+++.++.... . .+++++.+.++..+.|+.+++.++
T Consensus 132 ~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (489)
T PRK10836 132 IWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVA 211 (489)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHH
Confidence 356677778899999999999999999999999888887776654311 1 112222211112234677777777
Q ss_pred HHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC---------CCCcHHHHHHHh
Q 010659 100 ATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASH 170 (505)
Q Consensus 100 ~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~---------~~~p~~~a~~~~ 170 (505)
...+|+|.|||.+++++||+|||+||+|||++.++..++++|++....+...+|+++.+ ..+|+..+++..
T Consensus 212 ~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~ 291 (489)
T PRK10836 212 MIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHA 291 (489)
T ss_pred HHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHc
Confidence 77889999999999999999999999999999999999999999999999998876531 136888899998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------c
Q 010659 171 GMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------D 244 (505)
Q Consensus 171 g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~ 244 (505)
+.+++..++.++++++.+++.|+.+++.+|++|+|||||.+|++|+|+||+ |+|++|++++++++.+..+.. .
T Consensus 292 g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~ 370 (489)
T PRK10836 292 GLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTV 370 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 888888999999999999999999999999999999999999999999976 999999999999887765542 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 245 VSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 245 ~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
++.+.++.++..++.|++.+++++++||+.++
T Consensus 371 ~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~ 402 (489)
T PRK10836 371 YLWLLNTSGMTGFIAWLGIAISHYRFRRGYVL 402 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688889999999999999999999987544
No 11
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=9e-36 Score=317.74 Aligned_cols=259 Identities=23% Similarity=0.307 Sum_probs=216.3
Q ss_pred hccCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccc-----cCCCCcCCCCC
Q 010659 15 RQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYL---GFK-----TGWSGYELPTG 86 (505)
Q Consensus 15 ~~~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~---~~~-----~~~~~~~~~~~ 86 (505)
..+.|..+. ..++.+++++++.+|++|+|..+++|.+++.+|++.++++++.++.. ... .+++++.++++
T Consensus 116 ~~~~p~~~~--~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g 193 (461)
T PRK10746 116 QFWFPEMAQ--WIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGG 193 (461)
T ss_pred HHccCCCch--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCC
Confidence 344554333 34667778889999999999999999999999998888887766532 111 11233333445
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHH
Q 010659 87 YFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISS 165 (505)
Q Consensus 87 ~~p~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~ 165 (505)
+.|.|+.|+..++..++|+|.|+|.+++.+||+|||+|++|||+..++..+.++|++..+.+...+|+++++ .++|+..
T Consensus 194 ~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~ 273 (461)
T PRK10746 194 FFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVL 273 (461)
T ss_pred cCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHH
Confidence 667889999999999999999999999999999999999999999999999999999999999999999885 4569999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHH---HH
Q 010659 166 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA---FF 242 (505)
Q Consensus 166 a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~---~~ 242 (505)
++++.+.+.+..++.+.++++.+++.|+.+++.+|++|+|||||.+|++|+|+|++ |+|++|++++.+...+.. ..
T Consensus 274 ~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~-g~P~~al~~~~~~~~l~~~~~~~ 352 (461)
T PRK10746 274 TFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRH-GVPVAGVAVSILILLVGSCLNYI 352 (461)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888899999999999999999999999999999999999999999965 999999998765433211 11
Q ss_pred h-----cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 243 M-----DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 243 ~-----~~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
. .++.+.++.+++.++.|++.+++.+++||++|+
T Consensus 353 ~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~ 391 (461)
T PRK10746 353 IPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKA 391 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 256688899999999999999999999998765
No 12
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.8e-35 Score=315.43 Aligned_cols=249 Identities=22% Similarity=0.355 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c--cc---cCCCCcCCCCCCCCchhHHHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYL---G--FK---TGWSGYELPTGYFPFGVNGMLAG 98 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~---~--~~---~~~~~~~~~~~~~p~g~~gil~g 98 (505)
.++++++++++.+|++|+|..+++|.+++++|++.++++++.++.. . .. .+..+..+++++.|.|+.+++.+
T Consensus 125 ~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 204 (457)
T PRK10580 125 IWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMS 204 (457)
T ss_pred HHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHH
Confidence 3566777889999999999999999999999999888777666421 1 10 11111112234557788889999
Q ss_pred HHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHHH
Q 010659 99 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASY 177 (505)
Q Consensus 99 ~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~~ 177 (505)
+..++|+|.|+|.+++++||+|||+|++|||++.++..+.++|++..+.+....|++++. .++|+..+++..|.+++..
T Consensus 205 ~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~ 284 (457)
T PRK10580 205 LQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAAS 284 (457)
T ss_pred HHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHH
Confidence 999999999999999999999999999999999999999999999999988888988875 3468888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHHHH
Q 010659 178 VITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGM 251 (505)
Q Consensus 178 iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~~l 251 (505)
++.+.++.+.+++.++.+++.+|++|+|||||.+|++|+|+||+ |+|++|+++++++..+...+. .++.+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~~~-~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (457)
T PRK10580 285 ILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRR-GIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASL 363 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999975 999999999977554432221 25678899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 252 VSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 252 ~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.+++.+++|.+.+++.+++|+++++
T Consensus 364 ~~~~~~~~y~~~~~~~~~lr~~~~~ 388 (457)
T PRK10580 364 ATFATVWVWIMILLSQIAFRRRLPP 388 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 13
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1.6e-35 Score=316.66 Aligned_cols=249 Identities=23% Similarity=0.387 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----c----CCCCcCCCCCCCCchhHHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK-----T----GWSGYELPTGYFPFGVNGMLA 97 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~-----~----~~~~~~~~~~~~p~g~~gil~ 97 (505)
.++.+++++++.+|++|+|..+++|++.+.+|++.++.+++.++..... + ++.+..+.+++.|.|+.+++.
T Consensus 136 ~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~ 215 (469)
T PRK11049 136 VASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFA 215 (469)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHH
Confidence 4567778889999999999999999999999999999988887764211 1 122222334566778889999
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHH
Q 010659 98 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWAS 176 (505)
Q Consensus 98 g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~ 176 (505)
++...+|+|.|||.+++++||+|||+|++||++..+.+.+.++|++.........|++++. .++|+.++++..++++..
T Consensus 216 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 295 (469)
T PRK11049 216 GFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAA 295 (469)
T ss_pred HHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHH
Confidence 9999999999999999999999999999999999888899999999999998888988874 457899988888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHH---HHHh-----cHHHH
Q 010659 177 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFFM-----DVSAL 248 (505)
Q Consensus 177 ~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il---~~~~-----~~~~l 248 (505)
.++.+.++++.+++.++.+++.+|++|+|||||.+|++|+|+||| |+|++|+++++++..+. ..+. .++.+
T Consensus 296 ~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (469)
T PRK11049 296 SVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLV 374 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 99999999988765431 1121 25667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 249 AGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 249 ~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.++.+++.++.|.+.+++++++|+++|+
T Consensus 375 ~~~~~~~~~i~y~~~~~a~~~lr~~~p~ 402 (469)
T PRK11049 375 TTVSAILFMFVWTIILCSYLVYRKQRPH 402 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8888888999999999999999998876
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=9.9e-36 Score=315.50 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf 106 (505)
+++++++++++++|++|+|..+++|.+.++++++.++.+++.++.+.+.+++.. +..+..+.++.+++.++..++|+|
T Consensus 123 ~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~faf 200 (435)
T PRK10435 123 IACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAA--NWNTSDTTDGHAIIKSILLCLWAF 200 (435)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcc--cccCCCCchHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999888777766666654433222211 001112345778999999999999
Q ss_pred hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhchhHHHHHHHHHHHH
Q 010659 107 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVT 185 (505)
Q Consensus 107 ~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~~~~~~iv~~~~~~ 185 (505)
.|+|.+++.+||+|||+||+|||++.+..+++++|++.++...+..|++++ ..++|+..++++.+++++..++++++++
T Consensus 201 ~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i 280 (435)
T PRK10435 201 VGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAF 280 (435)
T ss_pred hhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888 4678999999999999999999998999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHH------------hcHHHHHHHHH
Q 010659 186 ALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF------------MDVSALAGMVS 253 (505)
Q Consensus 186 ~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~------------~~~~~l~~l~s 253 (505)
+.+++.++.++..+|..++|||||.+||+|+|+||+ |+|++|++++++++.++... ..++.+.++.+
T Consensus 281 ~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk~-g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (435)
T PRK10435 281 ACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDKN-GIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAV 359 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 99999999988876553321 13667899999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 010659 254 VGTLLAFTMVAISVLILR 271 (505)
Q Consensus 254 ~~~li~y~~v~~a~i~lR 271 (505)
...++.|++++++.+++|
T Consensus 360 ~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 360 LLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999988554
No 15
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.5e-35 Score=313.20 Aligned_cols=250 Identities=18% Similarity=0.269 Sum_probs=214.6
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------CCCCcCCCCCCCCchhHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT-------GWSGYELPTGYFPFGVNGMLA 97 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~-------~~~~~~~~~~~~p~g~~gil~ 97 (505)
...++.+++++++.+|++|+|..+++|.+.+++|++.++.+++.++...... ++.+..+.+++.|.|+.+++.
T Consensus 106 ~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~ 185 (446)
T PRK10197 106 IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLS 185 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHH
Confidence 4567888899999999999999999999999999999988888777532111 111111223556788889999
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC--CCcHHHHHHHhchhHH
Q 010659 98 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP--DTPISSAFASHGMHWA 175 (505)
Q Consensus 98 g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~--~~p~~~a~~~~g~~~~ 175 (505)
++..++|+|.|+|.++..+||+|||+||+|||++.++..+.++|++..+.....+|+++.+. ..++..+++..+++++
T Consensus 186 a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~ 265 (446)
T PRK10197 186 AMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHA 265 (446)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999887543 3466777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHH
Q 010659 176 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALA 249 (505)
Q Consensus 176 ~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~ 249 (505)
..++.++++++.+++.|+.+++.+|++|+|||||.+|++|+|+|++ |+|++|++++++++.+..+.. .++.+.
T Consensus 266 ~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~ 344 (446)
T PRK10197 266 KLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRS-KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLI 344 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999955 999999999988776544432 367899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Q 010659 250 GMVSVGTLLAFTMVAISVLILRYVPP 275 (505)
Q Consensus 250 ~l~s~~~li~y~~v~~a~i~lR~~~~ 275 (505)
++.+...++.|.+.+++.+++||+.+
T Consensus 345 ~~~~~~~li~y~~~~~a~i~lr~~~~ 370 (446)
T PRK10197 345 DSSGAIALLVYLVIAVSQLRMRKILR 370 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998643
No 16
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=312.41 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=228.3
Q ss_pred HhhhccCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-------CCCcCCC
Q 010659 12 FMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTG-------WSGYELP 84 (505)
Q Consensus 12 ~~~~~~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~-------~~~~~~~ 84 (505)
.+...|.|.. ...+.+..++.+++..+|++|+|..+..+.++..+|++.++.+++.|+....... .+.+.+
T Consensus 148 ~vi~yW~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~- 225 (541)
T COG0833 148 LVIQYWFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHD- 225 (541)
T ss_pred HhhhhhcCCC-CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecC-
Confidence 3455666544 4556688889999999999999999999999999999999999999887532211 111222
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC------
Q 010659 85 TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD------ 158 (505)
Q Consensus 85 ~~~~p~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~------ 158 (505)
++.++.|+.|++..+..+.|+|.|.|.+...|+|.+||+|++|||+...+..+.++|++..+.+...+|++|.+
T Consensus 226 pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~ 305 (541)
T COG0833 226 PGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSS 305 (541)
T ss_pred CCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCc
Confidence 34557789999999999999999999999999999999999999999999999999999999999999998832
Q ss_pred ---CCCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHH
Q 010659 159 ---PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIV 235 (505)
Q Consensus 159 ---~~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl 235 (505)
..+|+..+++..|.+.++.++++.++++.+++.|+.+++++|++|+||+||..||+|+|+||+ |+|.+|++++.++
T Consensus 306 ~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~f 384 (541)
T COG0833 306 SGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLF 384 (541)
T ss_pred CCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHH
Confidence 346999999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred HHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 236 AAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 236 ~~il~~~~------~~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
+.+..+-. .+++|.+++++..++.|+.++++.+++|+..+.
T Consensus 385 g~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~ 431 (541)
T COG0833 385 GLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKA 431 (541)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86643332 278899999999999999999999999986544
No 17
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=306.79 Aligned_cols=264 Identities=24% Similarity=0.381 Sum_probs=236.4
Q ss_pred hHHhhhccCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------ccCCCCc
Q 010659 10 PFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF--------KTGWSGY 81 (505)
Q Consensus 10 ~~~~~~~~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~--------~~~~~~~ 81 (505)
-+.+.+.|+|+.+.|+ .+++++++...+|+.++|..+.++.++..+|++.++.+++.|..... ..+.++.
T Consensus 114 i~~y~~~WfP~vP~Wv--~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl 191 (462)
T COG1113 114 IGIYLQFWFPDVPQWV--FALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNL 191 (462)
T ss_pred HHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccc
Confidence 3455778899886655 88889999999999999999999999999999999999998886432 1234555
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC-C
Q 010659 82 ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-D 160 (505)
Q Consensus 82 ~~~~~~~p~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~-~ 160 (505)
.+.++|+|+|+.|++.++..++|+|.|.|.+...++|+|||+|.+|||+......+.++|+.....+....|+++++. +
T Consensus 192 ~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~ 271 (462)
T COG1113 192 WDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG 271 (462)
T ss_pred ccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999854 5
Q ss_pred CcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHH
Q 010659 161 TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 240 (505)
Q Consensus 161 ~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~ 240 (505)
+|+...|+..|.+++..++++.++++.+++.|+.+++.+|++|++|+||..||.++|+|++ |+|++|++++++...+..
T Consensus 272 SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V 350 (462)
T COG1113 272 SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGV 350 (462)
T ss_pred CcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999 999999999988766544
Q ss_pred HHh---c---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 241 FFM---D---VSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 241 ~~~---~---~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.+. + ++.+.+.++.+.+..|.++.++.+++|+++|+
T Consensus 351 ~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~ 392 (462)
T COG1113 351 VLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPA 392 (462)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 332 2 66788999999999999999999999995544
No 18
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.1e-34 Score=313.00 Aligned_cols=252 Identities=23% Similarity=0.363 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCC--CchhHHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF--PFGVNGMLAGSATV 102 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~--p~g~~gil~g~~~~ 102 (505)
..+++++++++++.+|++|+|.++|+|+++++++++.++++++.++.....++.........+. ..+..++..++..+
T Consensus 165 ~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~ 244 (501)
T TIGR00911 165 IRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSG 244 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHH
Confidence 3567888889999999999999999999999999999988888877643322221111111111 12466788899999
Q ss_pred HHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhchhHHHHHHHHH
Q 010659 103 FFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIG 182 (505)
Q Consensus 103 ~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~ 182 (505)
+|+|.|||.+++++||+|||+|++|||++.++.+++++|++.+++.....|.+++..+++....+.....++...++.+.
T Consensus 245 ~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~ 324 (501)
T TIGR00911 245 IWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPAL 324 (501)
T ss_pred HHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888775444444333333222556778888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010659 183 AVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTM 262 (505)
Q Consensus 183 ~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y~~ 262 (505)
+.++.+++.++.+.+.+|++++|||||.+|++|+|+|+|+++|++|++++++++.+.....++..+.++.++..++.|.+
T Consensus 325 ~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l 404 (501)
T TIGR00911 325 VGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNAL 404 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998887776778888888889999999999
Q ss_pred HHHHHHHhhccCCC
Q 010659 263 VAISVLILRYVPPD 276 (505)
Q Consensus 263 v~~a~i~lR~~~~~ 276 (505)
+.++++++|+|+|+
T Consensus 405 ~~~a~i~lR~~~p~ 418 (501)
T TIGR00911 405 AVAGLLWLRYKRPE 418 (501)
T ss_pred HHHHHHheeccCCC
Confidence 99999999998876
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=2e-34 Score=307.34 Aligned_cols=249 Identities=20% Similarity=0.360 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cCCCCcCCCCCCCCchhHHHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK------TGWSGYELPTGYFPFGVNGMLAGS 99 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~------~~~~~~~~~~~~~p~g~~gil~g~ 99 (505)
..++.+++++++++|++|+|..+++|.+++++|++.++++++.++..... .++++..+.+++.|.|+.+++.++
T Consensus 136 ~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (458)
T PRK10249 136 WIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSL 215 (458)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHH
Confidence 34678888889999999999999999999999998888877766643211 111111122345577899999999
Q ss_pred HHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHHHH
Q 010659 100 ATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYV 178 (505)
Q Consensus 100 ~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~~i 178 (505)
...+|+|.|+|.+++++||+|||+|++|||++.++..++++|++.........|+++.. .++|+..++++.++++...+
T Consensus 216 ~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 295 (458)
T PRK10249 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASA 295 (458)
T ss_pred HHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999988888888764 34799999999998999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHHHHH
Q 010659 179 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMV 252 (505)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~~l~ 252 (505)
+.+.++++.+++.++.+++.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.+..++. .++.+.++.
T Consensus 296 ~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~-~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~ 374 (458)
T PRK10249 296 LNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRR-GVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALV 374 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999966 999999999999887665442 256788899
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC
Q 010659 253 SVGTLLAFTMVAISVLILRYVPP 275 (505)
Q Consensus 253 s~~~li~y~~v~~a~i~lR~~~~ 275 (505)
+...++.|.+.+++.+++|++.+
T Consensus 375 ~~~~~i~y~~~~~~~l~~r~~~~ 397 (458)
T PRK10249 375 VATLLLNWIMICLAHLRFRAAMR 397 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.8e-34 Score=307.34 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=214.1
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----c---cCCCCcCCCCCCCC
Q 010659 17 QIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF----K---TGWSGYELPTGYFP 89 (505)
Q Consensus 17 ~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~----~---~~~~~~~~~~~~~p 89 (505)
+.|+.+ ...++++++++++.+|++|+|..+++|++++++|++.++.+++.++.... . .+++++.+.+++.|
T Consensus 120 ~~~~~~--~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
T TIGR01773 120 WFPDIP--LWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFP 197 (452)
T ss_pred hcCcCc--HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCc
Confidence 345433 34578888888999999999999999999999999988887776653211 1 11222233345667
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC--CCCcHHHHH
Q 010659 90 FGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAF 167 (505)
Q Consensus 90 ~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~--~~~p~~~a~ 167 (505)
.|+.+++.++...+|+|.|+|.+++++||+|||+|++|||+..+...++++|++......++.|+++.+ ...|+..+.
T Consensus 198 ~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~ 277 (452)
T TIGR01773 198 NGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVL 277 (452)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHH
Confidence 788889999999999999999999999999999999999999999999999999988888888876643 234888888
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh----
Q 010659 168 ASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM---- 243 (505)
Q Consensus 168 ~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~---- 243 (505)
+..+++++..++.++++++.+++.++.+++.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.+..+..
T Consensus 278 ~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~~~-~~P~~Ail~~~~~~~~~~l~~~~~~ 356 (452)
T TIGR01773 278 ELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLNKK-GVPVQAVLASTFFSFLTVVVNYFAP 356 (452)
T ss_pred HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCH
Confidence 888888888999999999999999999999999999999999999999999965 999999999998887665442
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 244 --DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 244 --~~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.++.+.++.+...++.|.+++++.+++|++.|+
T Consensus 357 ~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~ 391 (452)
T TIGR01773 357 DKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKA 391 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 145677888888899999999999999987654
No 21
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=4.4e-34 Score=304.50 Aligned_cols=249 Identities=22% Similarity=0.383 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c----CCCCcCCCCCCCCchhHHHHHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK--T----GWSGYELPTGYFPFGVNGMLAGSA 100 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~--~----~~~~~~~~~~~~p~g~~gil~g~~ 100 (505)
.++.+++++++.+|++|+|..+++|.+++++|++.++++++.++..... + .+.++.+.+++.|.|+.+++.++.
T Consensus 128 ~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 207 (456)
T PRK10238 128 VSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMA 207 (456)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHH
Confidence 4567777889999999999999999999999998887777655432111 1 111212234566778888888898
Q ss_pred HHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchhHHHHHH
Q 010659 101 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVI 179 (505)
Q Consensus 101 ~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~~~~~iv 179 (505)
.++|+|.|+|.+++++||+|||+|++|||++.++..+.++|+..........|++++. .++|+..++++.+.++...++
T Consensus 208 ~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~ 287 (456)
T PRK10238 208 IIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANAL 287 (456)
T ss_pred HHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999999999999999999999888888888988874 457999999999989888999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHHHHHH
Q 010659 180 TIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVS 253 (505)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~~l~s 253 (505)
.+.++++.+++.++.+++.+|++|+|||||.+|++|+|+|++ ++|++|++++++++.+..++. .++.+.++.+
T Consensus 288 ~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~ 366 (456)
T PRK10238 288 NIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV 366 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 999999999999887665542 2677889999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC
Q 010659 254 VGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 254 ~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.+.+++|.+.+++.+++||++++
T Consensus 367 ~~~~i~y~~~~~~~l~~r~~~~~ 389 (456)
T PRK10238 367 SALVINWAMISLAHMKFRRAKQE 389 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987665
No 22
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-35 Score=300.49 Aligned_cols=257 Identities=26% Similarity=0.389 Sum_probs=225.3
Q ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCC-CCCCchhHHHHHHHHHH
Q 010659 24 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPT-GYFPFGVNGMLAGSATV 102 (505)
Q Consensus 24 ~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~-~~~p~g~~gil~g~~~~ 102 (505)
...+++.+++++++.+|+.++|..+++|+++++.|++++.++++.|++.....+.+++.++. .....+...+..++...
T Consensus 134 ~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysg 213 (479)
T KOG1287|consen 134 ASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSG 213 (479)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999865544444332221 01112334477788889
Q ss_pred HHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHh-chhHHHHHHHH
Q 010659 103 FFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITI 181 (505)
Q Consensus 103 ~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~-g~~~~~~iv~~ 181 (505)
+|+|.|||.....+||+|||+||+|||+..++.++++.|++++++....++.+++..++..+..|.+. +|.+. +++.+
T Consensus 214 lfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~ 292 (479)
T KOG1287|consen 214 LFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPF 292 (479)
T ss_pred hhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999986666666666665 55555 99999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010659 182 GAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFT 261 (505)
Q Consensus 182 ~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y~ 261 (505)
.+.++.++++|+.+++.||.++++||+|+||+.|+++|+++.||..|+++.+.++++..+..|++++++..++...+.+.
T Consensus 293 ~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~ 372 (479)
T KOG1287|consen 293 SVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRG 372 (479)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999899999999999999999999
Q ss_pred HHHHHHHHhhccCCCC-CCCC
Q 010659 262 MVAISVLILRYVPPDE-VPVP 281 (505)
Q Consensus 262 ~v~~a~i~lR~~~~~~-~p~~ 281 (505)
+..++++++|+|+|+. ||+|
T Consensus 373 l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 373 LSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred HHHHHHHHHHhhCCCCCCCEe
Confidence 9999999999999882 4433
No 23
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=6.3e-34 Score=305.28 Aligned_cols=248 Identities=21% Similarity=0.304 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--C-----CCCcCCCCCCCCc----hhHHHH
Q 010659 28 CAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT--G-----WSGYELPTGYFPF----GVNGML 96 (505)
Q Consensus 28 ~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~--~-----~~~~~~~~~~~p~----g~~gil 96 (505)
+..+++++++++|++|+|.++++|++.+.+|++.++.+++.++.....+ + +..+.+++++.+. ++.++.
T Consensus 121 ~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (478)
T TIGR00913 121 WIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVC 200 (478)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHH
Confidence 3455667788999999999999999999999988888777766542211 1 1111122334332 267788
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC---C-------CCCcHHHH
Q 010659 97 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM---D-------PDTPISSA 166 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l---~-------~~~p~~~a 166 (505)
.++...+|+|.|+|.+++++||+|||+||+|||++.+..+++++|++..+++....|+++. + ..+|+..+
T Consensus 201 ~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~ 280 (478)
T TIGR00913 201 SVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIA 280 (478)
T ss_pred HHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999998888888887652 1 12577777
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh---
Q 010659 167 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--- 243 (505)
Q Consensus 167 ~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~--- 243 (505)
++..+.+++..++.++++++.+++.++.+++.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.+..+..
T Consensus 281 ~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~-~~P~~Ai~~~~~~~~l~~l~~~~~ 359 (478)
T TIGR00913 281 IQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDRR-GVPYVAVIVSSLFGLLAFLAVSKK 359 (478)
T ss_pred HHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHccC
Confidence 7888888888999999999999999999999999999999999999999999965 999999999999876543332
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 244 ---DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 244 ---~~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.++.+.++.+.+.++.|++.+++.+++|++.++
T Consensus 360 ~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~ 395 (478)
T TIGR00913 360 EAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKA 395 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 266788999999999999999999999987554
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=5.7e-34 Score=305.13 Aligned_cols=247 Identities=19% Similarity=0.330 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-cCCC-CCCCCchhHHHHHHHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG-YELP-TGYFPFGVNGMLAGSATVF 103 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~-~~~~-~~~~p~g~~gil~g~~~~~ 103 (505)
.+++++++++++.+|++|+|..+|+|++++.+|++.++++++.++...+.+++.. +... .+..+.++.+++.++...+
T Consensus 130 ~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 209 (473)
T TIGR00905 130 ILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTL 209 (473)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHH
Confidence 4567777888999999999999999999999999998888888775433333221 1111 1111234667888999999
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCc-HHHHHHHhchhHHHHHHHH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTP-ISSAFASHGMHWASYVITI 181 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p-~~~a~~~~g~~~~~~iv~~ 181 (505)
|+|.|||.+++++||+|| +|++||+++.++.+++++|++...+..+..|.+++ +.++| ..++.+...++++..++.+
T Consensus 210 ~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i 288 (473)
T TIGR00905 210 WVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISL 288 (473)
T ss_pred HHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999888888876 44677 6777778888888889999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHH
Q 010659 182 GAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGT 256 (505)
Q Consensus 182 ~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~-----~~~~~l~~l~s~~~ 256 (505)
+++++.+++.++.+.+.+|++|+|||||.+|++|+|+||| ++|++|+++.++++.++.++ .+++.+.++.+++.
T Consensus 289 ~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (473)
T TIGR00905 289 GLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMI 367 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 99999999999987655433 35788999999999
Q ss_pred HHHHHHHHHHHHHhhccC
Q 010659 257 LLAFTMVAISVLILRYVP 274 (505)
Q Consensus 257 li~y~~v~~a~i~lR~~~ 274 (505)
++.|.+++++.+++|+|+
T Consensus 368 ~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 368 LVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999998875
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.6e-33 Score=296.43 Aligned_cols=241 Identities=18% Similarity=0.219 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA 105 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa 105 (505)
..++++++++++.+|++|+|.++|+|++.+++.+..++.+...+ ..+..++ . ..++.+.++.+++.++...+|+
T Consensus 116 ~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~a 189 (410)
T PRK11021 116 LLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAG--DIKPADI---P-FPAPGSIEWSGLFAALGVMFWC 189 (410)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhcC---C-CCCCCCccHHHHHHHHHHHHHH
Confidence 45677788889999999999999999998865544333222111 1111111 1 1122345788899999999999
Q ss_pred hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhchhHHHHHHHHHHH
Q 010659 106 FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAV 184 (505)
Q Consensus 106 f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~~~~~~iv~~~~~ 184 (505)
|.|||.+++++||+|||+||+|||++.++.+++++|++.+.......|+++. ..++|...++++..++++..++.+..+
T Consensus 190 f~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~ 269 (410)
T PRK11021 190 FVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGY 269 (410)
T ss_pred HhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887777766554 345677777877766667778888889
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHH
Q 010659 185 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLA 259 (505)
Q Consensus 185 ~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~-----~~~~~l~~l~s~~~li~ 259 (505)
++.+++.++.+.+.+|++|+|||||.+|++|+|+||+ |+|++|++++++++.+..++ .+++.+.++.+...++.
T Consensus 270 ~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~-~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~ 348 (410)
T PRK11021 270 LACFASVNIYTQSFARLVWSQAREGRPPSYLARLSAR-GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLI 348 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccC-CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 99999999998877665433 36788999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 010659 260 FTMVAISVLILRYV 273 (505)
Q Consensus 260 y~~v~~a~i~lR~~ 273 (505)
|.+++++.+++|++
T Consensus 349 y~~~~~a~~~l~~~ 362 (410)
T PRK11021 349 YLLCMLAACKLLKG 362 (410)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998753
No 26
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=8.9e-34 Score=321.58 Aligned_cols=251 Identities=18% Similarity=0.296 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---CCCC-----cCC-CCCCCCchhHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT---GWSG-----YEL-PTGYFPFGVNGM 95 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~---~~~~-----~~~-~~~~~p~g~~gi 95 (505)
..+++++++++++++|++|+|.++|+|.++++++++.++.+++.++...... ++.. +.. ..+..+.+..++
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f 282 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGF 282 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHH
Confidence 4578899999999999999999999999999999999888877665422110 0100 110 001112233347
Q ss_pred HHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCC-CC-------------
Q 010659 96 LAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DT------------- 161 (505)
Q Consensus 96 l~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~-~~------------- 161 (505)
+..+++.|++|.|+|++++++||+|||+|++|||++.++.+++++|++.++++....+.+.... ++
T Consensus 283 ~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~ 362 (953)
T TIGR00930 283 FSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFS 362 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhh
Confidence 7778888899999999999999999999999999999999999999999987777776443211 11
Q ss_pred -----cHHHH----HHH-hchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--ccccccCCCCCCcchHH
Q 010659 162 -----PISSA----FAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKST 229 (505)
Q Consensus 162 -----p~~~a----~~~-~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP--~~~~kv~~r~~tP~~Ai 229 (505)
|.... +.. ....+...++.++++++.+++.++++++++|++++|||||.+| ++|+|+|+|+++|++|+
T Consensus 363 ~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Al 442 (953)
T TIGR00930 363 ECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAY 442 (953)
T ss_pred hhcccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHH
Confidence 11111 111 1122345789999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010659 230 IVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 275 (505)
Q Consensus 230 l~~~vl~~il~~~~~~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~ 275 (505)
+++++++.++.++++++.++.+.+.+++++|.+++++++++|++++
T Consensus 443 llt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~ 488 (953)
T TIGR00930 443 LLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRS 488 (953)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999989999999999999999999999999999987553
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=8.8e-32 Score=287.90 Aligned_cols=247 Identities=17% Similarity=0.276 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--cCCC-CCC-CCchhHHHHHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELP-TGY-FPFGVNGMLAGSAT 101 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~--~~~~-~~~-~p~g~~gil~g~~~ 101 (505)
...+.+++++++.+|++|+|..+++|++++++|++.++++++.++...+.+++.. +.+. +++ ....+.++..++..
T Consensus 124 ~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (468)
T TIGR03810 124 IIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLV 203 (468)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHH
Confidence 3456667778999999999999999999999999999888887775433333221 1111 111 12235567788889
Q ss_pred HHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCc-HHHHHHHhchhHHHHHH
Q 010659 102 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTP-ISSAFASHGMHWASYVI 179 (505)
Q Consensus 102 ~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p-~~~a~~~~g~~~~~~iv 179 (505)
.+|+|.|||.+++++||+|| +||+||++..++..++++|++.+....+..|+++++ .++| ...++++.+++++..++
T Consensus 204 ~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i 282 (468)
T TIGR03810 204 TVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLI 282 (468)
T ss_pred HHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHH
Confidence 99999999999999999998 799999999999999999999999988888887763 3445 67778888889999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHH-----hcHHHHHHHHHH
Q 010659 180 TIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSV 254 (505)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~-----~~~~~l~~l~s~ 254 (505)
.++++++.+++.++.+.+.+|++|+|||||.+|++|+|+||+ |+|++|++++++++.++.+. ..++.+.++.+.
T Consensus 283 ~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~-~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~ 361 (468)
T TIGR03810 283 NIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENAN-GAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS 361 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 99999999998887655433 236778999999
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 010659 255 GTLLAFTMVAISVLILRYVP 274 (505)
Q Consensus 255 ~~li~y~~v~~a~i~lR~~~ 274 (505)
..++.|.+.+++.+++|+|+
T Consensus 362 ~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 362 AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998765
No 28
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2.8e-31 Score=286.05 Aligned_cols=256 Identities=21% Similarity=0.259 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccccCCCCc-CCCCCCCCch-hHHHHHHHHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGY-ELPTGYFPFG-VNGMLAGSATVF 103 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~-l~~~ii~~~~~~~~~~~~~~-~~~~~~~p~g-~~gil~g~~~~~ 103 (505)
+..++++++++++|++|+|.+++++++..+..++. ++++++.++.....++.... .+.+++.|.. ..+.+..+...+
T Consensus 125 i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (507)
T TIGR00910 125 IAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFI 204 (507)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHH
Confidence 34556677899999999999999999876654443 44444444433222221111 1112233321 123344445568
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHH----HHhc--hhHHHH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAF----ASHG--MHWASY 177 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~----~~~g--~~~~~~ 177 (505)
|+|.|+|.+++.+||+|||+|++|||++.+++++.++|.+.++.+...+|+++++..++..+.+ ...+ ..+...
T Consensus 205 faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (507)
T TIGR00910 205 GAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVK 284 (507)
T ss_pred HHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHH
Confidence 9999999999999999999999999999999999999999888888888988876555444443 3332 356777
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh---------cHHHH
Q 010659 178 VITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM---------DVSAL 248 (505)
Q Consensus 178 iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~---------~~~~l 248 (505)
++.+..+++.+++.++++++.+|++++|||||.+|++|+|+||+ ++|++|++++++++.++.++. .+..+
T Consensus 285 ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~nk~-~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l 363 (507)
T TIGR00910 285 VIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMNKH-EVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIA 363 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 88888899999999999999999999999999999999999965 999999999999887654331 13446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCC
Q 010659 249 AGMVSVGTLLAFTMVAISVLILRYVPPD-EVPVPST 283 (505)
Q Consensus 249 ~~l~s~~~li~y~~v~~a~i~lR~~~~~-~~p~~~~ 283 (505)
.++.+...++.|++..++++++|+|+|+ +||||.|
T Consensus 364 ~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~p 399 (507)
T TIGR00910 364 IALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIP 399 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEec
Confidence 6778889999999999999999998876 3555543
No 29
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=9.3e-31 Score=280.46 Aligned_cols=255 Identities=19% Similarity=0.348 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccccCCCCcC-CCCCCCCc--hhHHHHHHHHHH
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTA-NVLAMLFVIIAGSYLGFKTGWSGYE-LPTGYFPF--GVNGMLAGSATV 102 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~-~i~~l~~~ii~~~~~~~~~~~~~~~-~~~~~~p~--g~~gil~g~~~~ 102 (505)
.++++++++++.+|++|+|.++++|++...+ +++.++++++.++.....++..... +..++.|. ++.++..+ ...
T Consensus 125 ~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~ 203 (474)
T TIGR03813 125 VSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASI 203 (474)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHH
Confidence 3566666778899999999999999987554 4555555666555432111110000 00111221 23333333 346
Q ss_pred HHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcH----HHHHHHhchhHHHHH
Q 010659 103 FFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPI----SSAFASHGMHWASYV 178 (505)
Q Consensus 103 ~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~----~~a~~~~g~~~~~~i 178 (505)
+|+|.|+|.++..+||+|||+|++|||++.++.+++++|++.++++....|+++...+++. .++++..|.++...+
T Consensus 204 ~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 283 (474)
T TIGR03813 204 FLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPI 283 (474)
T ss_pred HHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHH
Confidence 8999999999999999999999999999999999999999999999999998887544443 334455567788888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh----c----HHHHHH
Q 010659 179 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM----D----VSALAG 250 (505)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~----~----~~~l~~ 250 (505)
+.+...++.+++.++.+.+.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.++.++. + ++.+.+
T Consensus 284 ~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~k~-~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~ 362 (474)
T TIGR03813 284 LAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTNKN-GMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQ 362 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccCCC-CCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999954 999999999998765433221 2 566888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCC
Q 010659 251 MVSVGTLLAFTMVAISVLILRYVPPD-EVPVPST 283 (505)
Q Consensus 251 l~s~~~li~y~~v~~a~i~lR~~~~~-~~p~~~~ 283 (505)
+.+...+++|++.+++.+++|+|+|+ +||||.|
T Consensus 363 ~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p 396 (474)
T TIGR03813 363 LTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIP 396 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEec
Confidence 88888999999999999999987765 4565544
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=6.3e-31 Score=282.40 Aligned_cols=247 Identities=20% Similarity=0.230 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------CCCCcCCCC-CCCCchhHHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT------GWSGYELPT-GYFPFGVNGMLAG 98 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~------~~~~~~~~~-~~~p~g~~gil~g 98 (505)
..++++++++++++|++|+|..++++++..+++++.++++++..+...... .++++.+.. ++.+.|+ +++.+
T Consensus 144 ~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~ 222 (482)
T TIGR00907 144 FGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLG 222 (482)
T ss_pred hhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhh
Confidence 456677788899999999999999999999999888776555544322110 112222222 4445555 56777
Q ss_pred HHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc-CCcC-CC--CCcHHHHHHHh-chh
Q 010659 99 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVP-YYEM-DP--DTPISSAFASH-GMH 173 (505)
Q Consensus 99 ~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p-~~~l-~~--~~p~~~a~~~~-g~~ 173 (505)
+..+.|+|.|+|.+++++||+|||+|++|||++.++.+..++|.+..+......+ .++. +. +.|+.+.+.+. |.+
T Consensus 223 ~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~ 302 (482)
T TIGR00907 223 LLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNK 302 (482)
T ss_pred hhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCc
Confidence 8888999999999999999999999999999999998877665544443333322 2222 22 25888888775 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--ccccccCCCCCCcchHHHHHHHHHHHHHHHh-----cHH
Q 010659 174 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVS 246 (505)
Q Consensus 174 ~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP--~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-----~~~ 246 (505)
++..++.+.++++.+++.++.+++.+|++|+|||||.+| ++|+|+|||+++|++|++++++++.++.++. .++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~ 382 (482)
T TIGR00907 303 AGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQ 382 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 777778888889999999999999999999999999999 9999999999999999999999887765543 477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010659 247 ALAGMVSVGTLLAFTMVAISVLILRYV 273 (505)
Q Consensus 247 ~l~~l~s~~~li~y~~v~~a~i~lR~~ 273 (505)
.+.++.++..+++|.+..++.+++|++
T Consensus 383 ~l~~~~~~~~~i~y~~~~~~~l~~~~~ 409 (482)
T TIGR00907 383 AIFSVCTVALDVSYVIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999999999988877665544
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=269.14 Aligned_cols=252 Identities=36% Similarity=0.539 Sum_probs=217.7
Q ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHH
Q 010659 24 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVF 103 (505)
Q Consensus 24 ~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~ 103 (505)
...+++.+++++++.+|++|+|.+++++.+.++++++.++++++.++.....++.+......+ ......+++.++...+
T Consensus 133 ~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 211 (466)
T COG0531 133 LIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-GGGSFGGILAAILLAF 211 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-ccchHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999998887665543222211111 1123446888999999
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCC---CcHHHHHHHhchhHHHHHHH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD---TPISSAFASHGMHWASYVIT 180 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~---~p~~~a~~~~g~~~~~~iv~ 180 (505)
|+|.|+|.+++.+||+|||+|++||+++.++..++++|++.+.......|.+++... .|...+....++.+...++.
T Consensus 212 ~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~ 291 (466)
T COG0531 212 FAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIA 291 (466)
T ss_pred HHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887655433 68888888887789999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh-----cHHHHHHHHHHH
Q 010659 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVG 255 (505)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-----~~~~l~~l~s~~ 255 (505)
+..+.+.+++.++...+.+|.+|+|||||.+|++|+|+|+++++|++|+++.++++.++.... .++.+.++.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~ 371 (466)
T COG0531 292 ILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVA 371 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998899999999999998333332 257899999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 010659 256 TLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 256 ~li~y~~v~~a~i~lR~~~~~ 276 (505)
.++.|.+..++.+++|+++++
T Consensus 372 ~~~~y~~~~~~~~~~~~~~~~ 392 (466)
T COG0531 372 FLIAYLLVALALLVLRRKKPD 392 (466)
T ss_pred HHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999998665
No 32
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.97 E-value=8.2e-29 Score=265.49 Aligned_cols=249 Identities=22% Similarity=0.296 Sum_probs=190.5
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCC-CCCCCCchhHHHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-PTGYFPFGVNGMLAGSATVF 103 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~-~~~~~p~g~~gil~g~~~~~ 103 (505)
..+++++++++++++|++|+|..+++|++.++++++.++++++.++...+.+....+.. .++..+....+++.+....+
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 223 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAA 223 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999888777766654432211001111 11122222345777888889
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCcHHHHHHHh-chhHHHHHHH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFASH-GMHWASYVIT 180 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~--l~~~~p~~~a~~~~-g~~~~~~iv~ 180 (505)
|+|.|+|.+++++||+|||+|++|||++.++.+++++|.+..+......|..+ ...+++...++.+. +.+++ ..+.
T Consensus 224 ~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~~~ 302 (475)
T TIGR03428 224 YVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWG-TVLL 302 (475)
T ss_pred HHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhH-HHHH
Confidence 99999999999999999999999999999999998888877777666555321 11223344445444 44444 3455
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcc--cccccCCCCCCcchHHHHHHHHHHHHHHHh-----cHHHHHHHHH
Q 010659 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPP--FFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVS 253 (505)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~--~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-----~~~~l~~l~s 253 (505)
..++++.+++.++.+.+.+|++|+|||||.+|+ +|+|+|+|+++|++|+++.++++.++.++. .++.+.++.+
T Consensus 303 ~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~ 382 (475)
T TIGR03428 303 VDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCI 382 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 666788899999999999999999999999994 899999999999999999999988766552 3567888889
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 010659 254 VGTLLAFTMVAISVLILRYVP 274 (505)
Q Consensus 254 ~~~li~y~~v~~a~i~lR~~~ 274 (505)
++.+++|.+..++.+..|+|+
T Consensus 383 ~~~~~~Y~~~~~~~l~~~~~~ 403 (475)
T TIGR03428 383 VLIYLAYLLVTVPLLLRRLRG 403 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988888877654
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.97 E-value=2.6e-31 Score=285.12 Aligned_cols=250 Identities=28% Similarity=0.456 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCCCC---cCCCC---CCCCc--------h
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAG-SYLGFKTGWSG---YELPT---GYFPF--------G 91 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~-~~~~~~~~~~~---~~~~~---~~~p~--------g 91 (505)
+++.+++++++.+|++|+|..++++.++.++|++.++.+++.+ +......+..+ ..++. +..+. +
T Consensus 119 ~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (478)
T PF00324_consen 119 LIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGG 198 (478)
T ss_pred hhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccc
Confidence 4688889999999999999999999999999999999998888 32221111111 11111 12222 3
Q ss_pred hHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCC------CcHHH
Q 010659 92 VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD------TPISS 165 (505)
Q Consensus 92 ~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~------~p~~~ 165 (505)
+.+++.++..++++|.|+|.++..+||+|||+|++|||+..++.+++++|++.+++.+..+|+++.... +|+..
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 278 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVI 278 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhh
Confidence 789999999999999999999999999999999999999999999999999999999999999886322 47888
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhc-
Q 010659 166 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD- 244 (505)
Q Consensus 166 a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~- 244 (505)
+.+..++++...++.++.+++.+++.++.+++.+|++|+|||||.+|+.+.+.|+|+|+|++|++++++++.+..+...
T Consensus 279 ~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~ 358 (478)
T PF00324_consen 279 AAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSF 358 (478)
T ss_pred hhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccc
Confidence 9999999999999999999999999999999999999999999999966666677779999999999998877664432
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 245 -----VSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 245 -----~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
++.+.++.++..++.|.+++++.+++|++.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~ 395 (478)
T PF00324_consen 359 SPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKY 395 (478)
T ss_pred hhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhcc
Confidence 44578888899999999999999988887543
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.96 E-value=2.4e-28 Score=258.14 Aligned_cols=250 Identities=34% Similarity=0.549 Sum_probs=213.4
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccccCCCCc-CCCCCCCCchhHHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV-LAMLFVIIAGSYLGFKTGWSGY-ELPTGYFPFGVNGMLAGSATV 102 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i-~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~p~g~~gil~g~~~~ 102 (505)
..+++++++++++.+|++|.|.++|+|++.+.+++ ..++++++.++...+.++.+.. ...+.+.|.++.+++.++...
T Consensus 118 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (426)
T PF13520_consen 118 QFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVA 197 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHH
T ss_pred heeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHH
Confidence 45678888999999999999999999999999999 5777777778776544322210 111234455666788999999
Q ss_pred HHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCC----cHHHHHHHhchhHHHHH
Q 010659 103 FFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDT----PISSAFASHGMHWASYV 178 (505)
Q Consensus 103 ~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~----p~~~a~~~~g~~~~~~i 178 (505)
+|+|.|+|++++++||.|| ||+||++..+..++.++|++.+++.....|+++.+..+ +....++..++++...+
T Consensus 198 ~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (426)
T PF13520_consen 198 FFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAII 275 (426)
T ss_dssp GGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHH
T ss_pred Hhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccc
Confidence 9999999999999999776 89999999999999999999999999999998774432 46677778888899999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh------cHHHHHHHH
Q 010659 179 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMV 252 (505)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~------~~~~l~~l~ 252 (505)
+.++.+++.+++.++.+.+.+|++++|||||.+|++|+|+| |+|+|++|+++.++++.++..+. +++.+.++.
T Consensus 276 ~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~ 354 (426)
T PF13520_consen 276 VSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLS 354 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHH
T ss_pred cccccccccccccchhhcchhhcccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 66999999999999996654332 478899999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC
Q 010659 253 SVGTLLAFTMVAISVLILRYVPPDE 277 (505)
Q Consensus 253 s~~~li~y~~v~~a~i~lR~~~~~~ 277 (505)
++...+.|.+..++++++|+|+|+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 355 SVGYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999998873
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.96 E-value=7.2e-27 Score=251.75 Aligned_cols=244 Identities=16% Similarity=0.229 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-hhc-ccccCC-CC-----cCC--CCCCCCchhHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAG-SYL-GFKTGW-SG-----YEL--PTGYFPFGVNGM 95 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~-~~~-~~~~~~-~~-----~~~--~~~~~p~g~~gi 95 (505)
..++++++++++++|++|+|.++++|++.+++++...+++++.+ ... ...++. ++ +.+ .+++. +..++
T Consensus 136 ~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 213 (496)
T PRK15238 136 GILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQ--SPIAV 213 (496)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccc--cchHH
Confidence 35566777789999999999999999998888765543222221 111 111111 11 100 01111 11357
Q ss_pred HHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCC-------CcHHHHHH
Q 010659 96 LAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-------TPISSAFA 168 (505)
Q Consensus 96 l~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~-------~p~~~a~~ 168 (505)
+.++..++|+|.|+|.+++++||+|||+|++|||++.+..+++++|++..+.+....|+++.... .|+. +++
T Consensus 214 ~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 292 (496)
T PRK15238 214 LSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMN 292 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHH
Confidence 77888899999999999999999999999999999999999999999998888877887765321 1111 112
Q ss_pred Hhc-----------------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHH
Q 010659 169 SHG-----------------MHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIV 231 (505)
Q Consensus 169 ~~g-----------------~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~ 231 (505)
..+ +.+...+++++.+++.+++.++..++.+|.+++++|||.+|++|+|+||+ |+|++|+++
T Consensus 293 ~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~-g~P~~a~~~ 371 (496)
T PRK15238 293 NLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKN-GMPANAMWL 371 (496)
T ss_pred HHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcC-CCcHHHHHH
Confidence 111 24555577888899999999999999999999999999999999999955 999999999
Q ss_pred HHHHHHHHHHHhc---------HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010659 232 TGIVAAALAFFMD---------VSALAGMVSVGTLLAFTMVAISVLILRYV 273 (505)
Q Consensus 232 ~~vl~~il~~~~~---------~~~l~~l~s~~~li~y~~v~~a~i~lR~~ 273 (505)
+++++.++..... ++.+.++.++..++.|++++++++++||+
T Consensus 372 ~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 372 QCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9987775533321 56799999999999999999999999874
No 36
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=1.9e-26 Score=239.31 Aligned_cols=250 Identities=20% Similarity=0.279 Sum_probs=207.2
Q ss_pred cchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-C-------CCCcCCCCCCCCchhHH
Q 010659 23 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT-G-------WSGYELPTGYFPFGVNG 94 (505)
Q Consensus 23 ~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~-~-------~~~~~~~~~~~p~g~~g 94 (505)
.....+..++.++..++|+...|..++++.+...++++.+++.++......... + |..+++.+++.+.||.
T Consensus 175 ~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a- 253 (550)
T KOG1289|consen 175 YHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA- 253 (550)
T ss_pred eEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-
Confidence 445568888999999999999999999999999999988887777666543221 1 4445566777777886
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCC-cC--C--CCCcHHHHHHH
Q 010659 95 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYY-EM--D--PDTPISSAFAS 169 (505)
Q Consensus 95 il~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~-~l--~--~~~p~~~a~~~ 169 (505)
++.++....|.+.|+|+.++++||+|||+|+.||||+.++.+..++-.+..+.+....|++ +. + ...|+.+.+.+
T Consensus 254 fil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~ 333 (550)
T KOG1289|consen 254 FILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQ 333 (550)
T ss_pred HHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHH
Confidence 7778888899999999999999999999999999999999999999988888888888843 22 2 24799999988
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--ccccccCCCCCCcchHHHHHHHHHHHHHHHh----
Q 010659 170 HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM---- 243 (505)
Q Consensus 170 ~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP--~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~---- 243 (505)
..++-+...+....+++.+-...+++.++||+.|+.||||.|| ++++|+||++++|.+|+++..++++++.++.
T Consensus 334 ~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~ 413 (550)
T KOG1289|consen 334 ALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASA 413 (550)
T ss_pred hcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhH
Confidence 8776666777777788888899999999999999999999999 9999999999999999999999998876654
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010659 244 -DVSALAGMVSVGTLLAFTMVAISVLILRYV 273 (505)
Q Consensus 244 -~~~~l~~l~s~~~li~y~~v~~a~i~lR~~ 273 (505)
.++++.+...++..++|....++.+..+|+
T Consensus 414 ~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 414 TAFNALFSAAAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence 356677777777888888877666655554
No 37
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.80 E-value=5.7e-20 Score=133.11 Aligned_cols=51 Identities=49% Similarity=1.026 Sum_probs=50.4
Q ss_pred ccccccchhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhccccc
Q 010659 413 FMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 463 (505)
Q Consensus 413 f~~P~~P~~P~~~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~yg~~~s 463 (505)
||||++|++|++||++|+|||.+++..||+|+++|+++|+++||.||+|||
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 799999999999999999999999999999999999999999999999998
No 38
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.78 E-value=3.2e-17 Score=171.02 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA 105 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa 105 (505)
.+.+++++++++.+|+.|+|..+|+|.+++..+++.++++++.++.+.+.+++.+.. ..+.++.++..+....+++
T Consensus 115 ~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~ 190 (381)
T TIGR00837 115 RAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVA----LDTSYWPYILSALPVCLTS 190 (381)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCc----cccccHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999988888877665544443221 1123566788888888888
Q ss_pred hhhhh-hHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC----C---CCcHHHHHHH-hchhHHH
Q 010659 106 FIGFD-AVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD----P---DTPISSAFAS-HGMHWAS 176 (505)
Q Consensus 106 f~G~e-~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~----~---~~p~~~a~~~-~g~~~~~ 176 (505)
| |+| .++...+|.++++|++||+++.+..+++++|++...+..+..|++++. + .+++.++.+. .+.++..
T Consensus 191 f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 269 (381)
T TIGR00837 191 F-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIE 269 (381)
T ss_pred H-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHH
Confidence 8 675 588889999878999999999999999999999999999999988763 1 2355666665 4667788
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 010659 177 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGT 256 (505)
Q Consensus 177 ~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~ 256 (505)
.++.++.++++.++.++..++..+.+ ++.+++.+++ +.|..+.+++.+...+++.+.+...+.++...|+
T Consensus 270 ~~v~~~~~~al~tS~~g~~l~~~d~l---------~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~ 339 (381)
T TIGR00837 270 LALELFSNFALASSFLGVTLGLFDYL---------ADLFKFDDSK-KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAGL 339 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhCCCccc-CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999999888887543 3334444444 3377888888888888888888888889999998
Q ss_pred HHHHHHHHHHHHHhhc
Q 010659 257 LLAFTMVAISVLILRY 272 (505)
Q Consensus 257 li~y~~v~~a~i~lR~ 272 (505)
+..++...+..+..++
T Consensus 340 ~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 340 AATIWAVIIPALLAWK 355 (381)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887777754
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.74 E-value=1.6e-16 Score=166.90 Aligned_cols=258 Identities=19% Similarity=0.246 Sum_probs=196.7
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC------------cCCC
Q 010659 17 QIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG------------YELP 84 (505)
Q Consensus 17 ~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~------------~~~~ 84 (505)
.+|..+.|.-+-+..+..++..+.+.|....+|..++..+...+.+.-+.+..+..+...+..+ +.+.
T Consensus 189 ~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~y 268 (945)
T KOG1288|consen 189 FLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHY 268 (945)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeee
Confidence 3576667777888888888999999999999999888766655555544443332221111000 0000
Q ss_pred C-----------------CCCCchhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHH
Q 010659 85 T-----------------GYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIV 147 (505)
Q Consensus 85 ~-----------------~~~p~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~ 147 (505)
+ +....+...+-..+++.|-+.+|.-+.+++++|.|+|.|+|||+.+.++....++|++..+.
T Consensus 269 TG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 269 TGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred cCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHH
Confidence 0 11111223355566777888999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcCCCCCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--ccccccCCCCCCc
Q 010659 148 IVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVP 225 (505)
Q Consensus 148 l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP--~~~~kv~~r~~tP 225 (505)
+....|+..+..+-.+ ++. .+...+++.+|++.+.+.+.++.+.+++|++.++|||.++| -.++|...+-+.|
T Consensus 349 m~~t~~r~~Lq~dy~v---~~~--isl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP 423 (945)
T KOG1288|consen 349 MGCTVPRTLLQNDYDV---MMH--ISLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNP 423 (945)
T ss_pred hccCcchHHhhhchhh---eee--ccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCc
Confidence 8888887655333211 111 12233466778888888888999999999999999999999 6788887777999
Q ss_pred chHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCC
Q 010659 226 VKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP-PDEVP 279 (505)
Q Consensus 226 ~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y~~v~~a~i~lR~~~-~~~~p 279 (505)
+.|+.++..+.-++.+.++++.++.+.++.++++|..++++++.++... |+.||
T Consensus 424 ~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRP 478 (945)
T KOG1288|consen 424 YVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRP 478 (945)
T ss_pred eeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Confidence 9999999999999888899999999999999999999999999999854 66555
No 40
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4e-16 Score=164.94 Aligned_cols=178 Identities=19% Similarity=0.323 Sum_probs=145.6
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHH------hc
Q 010659 98 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFAS------HG 171 (505)
Q Consensus 98 g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~------~g 171 (505)
-+++.|-+.+|.-+.++.+++.|||+|+||.+.+.+++....+|+...+...+.+..-.+. | -+.+.... ..
T Consensus 415 LvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLR-D-KfG~sv~g~lVva~la 492 (1075)
T KOG2082|consen 415 LVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLR-D-KFGQSVGGNLVVATLA 492 (1075)
T ss_pred HHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhh-h-hhhhhccCcEEEEEec
Confidence 3455667899999999999999999999999999999999999998887776665422110 0 01111100 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--ccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHH
Q 010659 172 MHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALA 249 (505)
Q Consensus 172 ~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP--~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~ 249 (505)
+ ...|++.+|.+++.+++.+.++.+++|++.++|||+.+| +.|+|.+++ +.|.+|++++.+++-+.+++++++.++
T Consensus 493 W-PsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iA 570 (1075)
T KOG2082|consen 493 W-PSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIA 570 (1075)
T ss_pred C-CCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHH
Confidence 1 134688899999999999999999999999999999999 999999888 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCCCCC
Q 010659 250 GMVSVGTLLAFTMVAISVLILRY-VPPDEVP 279 (505)
Q Consensus 250 ~l~s~~~li~y~~v~~a~i~lR~-~~~~~~p 279 (505)
.+.++.++..|.++++++.+.-- +-|+.||
T Consensus 571 pilsmFFLMCY~fVNLaCavqtLLrtPnWRP 601 (1075)
T KOG2082|consen 571 PILSMFFLMCYLFVNLACAVQTLLRTPNWRP 601 (1075)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCCCCc
Confidence 99999999999999998877654 4455443
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.46 E-value=1.3e-11 Score=127.55 Aligned_cols=238 Identities=13% Similarity=0.123 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf 106 (505)
+.++++..+..++|+.+.|...+++++++-++++.++.+++.++.....+ ..+ ..+++.. + ..+..|+.-..++|
T Consensus 113 i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~-~~~--~~~~~~~-~-~~f~~g~l~GY~Tm 187 (378)
T TIGR00796 113 IFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGP-ILA--ASGAYAS-Q-QAFSKGFLEGYLTM 187 (378)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC-cCC--ccccccc-c-cHHHHHHHHHHHHH
Confidence 34555555566699999999999999999999999999999999764221 111 1111111 0 23666777778888
Q ss_pred h-------hhhhHhhhhh-hhcCcCCchhHHHHHHH-HHHHHHHHHHHHHHHhhccCCcCC----CCCcHHHHHHHhchh
Q 010659 107 I-------GFDAVASTAE-EVKNPQRDLPLGIGTAL-SICCALYMLVSIVIVGLVPYYEMD----PDTPISSAFASHGMH 173 (505)
Q Consensus 107 ~-------G~e~i~~~ae-E~knP~k~iPrai~~si-~i~~vlYil~~~~l~~~~p~~~l~----~~~p~~~a~~~~g~~ 173 (505)
. |+-.+....+ |.|||+|+.|+.+..++ ..+.+.|+...++..+..+.++.. .++.+.++.+...|+
T Consensus 188 D~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~ 267 (378)
T TIGR00796 188 DALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGS 267 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcch
Confidence 8 9988888888 99999999999999998 777788888888888887755442 334566777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 010659 174 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVS 253 (505)
Q Consensus 174 ~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s 253 (505)
.+..++.+.+.++++++.++...+.++ +|+|.++| +|+++.++...+...+.....++.+.++..
T Consensus 268 ~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~ 332 (378)
T TIGR00796 268 LGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISI 332 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999998888555 45666654 899999888888777777788999999888
Q ss_pred HHHHHHHHHHHHHHHH--hhccCCC-CCCCCCCc
Q 010659 254 VGTLLAFTMVAISVLI--LRYVPPD-EVPVPSTL 284 (505)
Q Consensus 254 ~~~li~y~~v~~a~i~--lR~~~~~-~~p~~~~~ 284 (505)
-...+.|-+.....+. +|++.|+ +||||.+.
T Consensus 333 PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~ 366 (378)
T TIGR00796 333 PVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITL 366 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHH
Confidence 8888888666666665 6777666 67777553
No 42
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.24 E-value=3.4e-11 Score=126.37 Aligned_cols=253 Identities=18% Similarity=0.274 Sum_probs=186.9
Q ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccC---CCCcCCCCCCCCc--hhHHHH
Q 010659 24 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF--KTG---WSGYELPTGYFPF--GVNGML 96 (505)
Q Consensus 24 ~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~--~~~---~~~~~~~~~~~p~--g~~gil 96 (505)
.+|-++.+.+++..++|..|++...|+|.++..+..+.+.-+++..+.-.. ..+ +....-.+++.|. .-..++
T Consensus 147 ~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF 226 (643)
T KOG2083|consen 147 MIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFF 226 (643)
T ss_pred HhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceE
Confidence 345588899999999999999999999999988888888887777665322 111 1111111111111 012456
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-------CCCC--cHHHHH
Q 010659 97 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-------DPDT--PISSAF 167 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-------~~~~--p~~~a~ 167 (505)
+.+++.|-+.+|.-+.++++++.|+|++++|++.+.++...+.+|...........-.+.. ..+. .+.+-+
T Consensus 227 ~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~ 306 (643)
T KOG2083|consen 227 SVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYL 306 (643)
T ss_pred eeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHH
Confidence 6677788899999999999999999999999999999999999998776654433222211 1111 222222
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--ccccccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 010659 168 ASHG-MHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD 244 (505)
Q Consensus 168 ~~~g-~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP--~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~ 244 (505)
+..- .....-....|...+..++..+++.+++++++++.+|...| .+++|-.++.+.|.++..++...+......++
T Consensus 307 qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~ige 386 (643)
T KOG2083|consen 307 QVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGE 386 (643)
T ss_pred HHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecc
Confidence 2221 12233456677888888889999999999999999999999 67888777778999999999998888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010659 245 VSALAGMVSVGTLLAFTMVAISVLILRYVPPD 276 (505)
Q Consensus 245 ~~~l~~l~s~~~li~y~~v~~a~i~lR~~~~~ 276 (505)
.+.+..+.+...+.+|.....+++.-+...++
T Consensus 387 ln~iapiis~FfL~syAlinf~~f~aSl~~s~ 418 (643)
T KOG2083|consen 387 LNIIAPIISNFFLLSYALINFSCFHASLAISE 418 (643)
T ss_pred cceeccchhhhhhhhhhccchhhhhhhhcccc
Confidence 99999999999999999998888865554443
No 43
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.04 E-value=7.8e-08 Score=99.59 Aligned_cols=171 Identities=14% Similarity=0.116 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHH-HHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAM-LFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSA-TVF 103 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l-~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~-~~~ 103 (505)
...++.+++++...+..|++..+|++.++..+++... +++...+....+.+|.. +..+.|+.+++.+.. ...
T Consensus 116 ~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~------P~~~~g~~~~~~~~~~~~~ 189 (359)
T TIGR00912 116 IVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLL------PVLENGLSPILKGAYPVVT 189 (359)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHcc------CccccCcHHHHhhhhHHhh
Confidence 4467777778888999999999999999998887663 33333222222222222 344557777888876 789
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC-CCCcHHHHHHHhchh-HHH---HH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMH-WAS---YV 178 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~-~~~p~~~a~~~~g~~-~~~---~i 178 (505)
|+|.|+|......+|.|||| +.||++..+..+++++|.+...+..+..++++.. ...|..+..+....+ ... .+
T Consensus 190 ~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~ 268 (359)
T TIGR00912 190 FAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELI 268 (359)
T ss_pred hhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHH
Confidence 99999999999999999964 6999999999999999999999999998888764 456888887776443 222 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 010659 179 ITIGAVTALCSTLMGSILPQPRILM 203 (505)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~sR~l~ 203 (505)
+...-+.+.+......++...+.+-
T Consensus 269 ~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 269 VMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344455555556666666543
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.85 E-value=2.8e-07 Score=96.50 Aligned_cols=177 Identities=18% Similarity=0.111 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf 106 (505)
+.++.+++++..++..|.|...|++.++...+++.++++.+....+.+.++....+ ....++..++.+....+|+|
T Consensus 124 i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p----~~~~~~~~i~~alpv~~~SF 199 (397)
T TIGR00814 124 LLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFP----SFNGFLKTLWLTIPVMVFSF 199 (397)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCC----cccchHHHHHHHHHHHHHHH
Confidence 56777777778999999999999999999999888888888777665554443211 11124567899999999999
Q ss_pred hhhhhHhhhh----hhhcCc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC----CCC-cHHHHHHHhchhH
Q 010659 107 IGFDAVASTA----EEVKNP---QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD----PDT-PISSAFASHGMHW 174 (505)
Q Consensus 107 ~G~e~i~~~a----eE~knP---~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~----~~~-p~~~a~~~~g~~~ 174 (505)
.|+|.++.++ ||-+|| +|+.-|++..+..+..++|+...++..+..+.++.. .+. .+....+....++
T Consensus 200 ~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~ 279 (397)
T TIGR00814 200 NHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAW 279 (397)
T ss_pred HccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcH
Confidence 9999999999 777655 577889999999999999999999999988877752 111 2233333456677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 010659 175 ASYVITIGAVTALCSTLMGSILPQPRILMAMAR 207 (505)
Q Consensus 175 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amAr 207 (505)
...+..+...+++.++..+..++....+..+-+
T Consensus 280 i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 280 ISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 777777777777777777777777666666654
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.70 E-value=4.7e-06 Score=87.41 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFF 104 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~f 104 (505)
....+..+.+++..+.+.|.|...|+|.++...+++.++.+++.++.+.+.++.... +-.+..+...+..+.+.++
T Consensus 120 ~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~----~~~~~~~~~~~~~lPv~~~ 195 (394)
T PF03222_consen 120 PWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDA----PPSPSDWSYILPALPVLVF 195 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhcc----ccccccHHHHHHHHHHHHH
Confidence 344566677777888899999999999999999999999888888876654443321 1123456778888999999
Q ss_pred hhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC----CCC---CcHHHHHHH-hchhHHH
Q 010659 105 AFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAFAS-HGMHWAS 176 (505)
Q Consensus 105 af~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l----~~~---~p~~~a~~~-~g~~~~~ 176 (505)
+|.-...++.+.+..++-+|++.|+++.+..+..++|++-..+..+.+|.++. +.+ +++....+. .+.++..
T Consensus 196 Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~ 275 (394)
T PF03222_consen 196 SFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWIS 275 (394)
T ss_pred HHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHH
Confidence 99999999999999997788899999999999999999998888888887754 222 234444444 3567777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010659 177 YVITIGAVTALCSTLMGSILPQPRILM 203 (505)
Q Consensus 177 ~iv~~~~~~~~~~~~~~~~~~~sR~l~ 203 (505)
.+..+...+++.++..+...+....+.
T Consensus 276 ~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 276 ILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887777666553
No 46
>PRK10483 tryptophan permease; Provisional
Probab=98.44 E-value=3.8e-05 Score=80.47 Aligned_cols=234 Identities=13% Similarity=0.055 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA 105 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa 105 (505)
..-++.+.+++..+.+.|.|...|+|.++...+++.++..+...+.+.+.++..+... ..+..+..++.+..+.+++
T Consensus 128 ~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~---~~~~~~~~~~~alPvl~~S 204 (414)
T PRK10483 128 RAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAE---SNASYAPYLLMTLPFCLAS 204 (414)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhcccc---ccchhHHHHHHHHHHHHhh
Confidence 3567778888888999999999999999999999988877777665554433321110 1111244466778888888
Q ss_pred hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC----CCCCc---HHHHHHH-hchhHHHH
Q 010659 106 FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPDTP---ISSAFAS-HGMHWASY 177 (505)
Q Consensus 106 f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l----~~~~p---~~~a~~~-~g~~~~~~ 177 (505)
|.=...++.+.+..++-.|++.|+++.+..+..++|++-..+..+.+|.+++ ..++. +.+.... .+.++...
T Consensus 205 Fgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~ 284 (414)
T PRK10483 205 FGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDL 284 (414)
T ss_pred ccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHH
Confidence 8777888999888776556899999999999999999999999999887663 12222 2233333 35567777
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 010659 178 VITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTL 257 (505)
Q Consensus 178 iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~l 257 (505)
+..+...+++.++..+...+....+..+-+- .+++.+- ....+++.+--.++++..+-..+..+.-.|..
T Consensus 285 ~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~---------~~~~~~r-~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~ 354 (414)
T PRK10483 285 LLVVFSNFAVASSFLGVTLGLFDYLADLFGF---------DDSAMGR-FKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA 354 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CCccccc-eeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777777778888777766666655543221 1111011 11233444555555655554444444444444
Q ss_pred HHHHHHHHHHHHhhc
Q 010659 258 LAFTMVAISVLILRY 272 (505)
Q Consensus 258 i~y~~v~~a~i~lR~ 272 (505)
.......+.....|+
T Consensus 355 ~~il~~ilP~lM~~~ 369 (414)
T PRK10483 355 ATIWAAIVPALLARA 369 (414)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.36 E-value=9e-05 Score=77.66 Aligned_cols=237 Identities=11% Similarity=0.055 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFF 104 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~f 104 (505)
....++.+.+++..+.+.|.|...|+|.++...+++.++..+.....+.+.++........+ ...-+..++.+..+.++
T Consensus 126 ~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~-~~~~~~~i~~alPVl~~ 204 (415)
T PRK09664 126 PRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTA-GTSYFPYIFMALPVCLA 204 (415)
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccc-cchHHHHHHHHHHHHHH
Confidence 44567888888999999999999999999999999988887777766655444321111100 01112346667777777
Q ss_pred hhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC----CCCCcHH----HHHHHhchhHHH
Q 010659 105 AFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPDTPIS----SAFASHGMHWAS 176 (505)
Q Consensus 105 af~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l----~~~~p~~----~a~~~~g~~~~~ 176 (505)
+|.=...++.+..-.++-.|.+.|+++.+..+..++|++-..+..+.+|.+++ ....... ...+....++..
T Consensus 205 SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~ 284 (415)
T PRK09664 205 SFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIE 284 (415)
T ss_pred hhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHH
Confidence 77777788888877776667899999999999999999999998888886654 1112222 223334566777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 010659 177 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGT 256 (505)
Q Consensus 177 ~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~ 256 (505)
.+..+...+++.++..+...+....+..+-+ +.+++.+ -.....++.+--.+++++.+-..+..+.-.|.
T Consensus 285 ~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~---------~~~~~~~-r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~ 354 (415)
T PRK09664 285 FCLLVFSNLAVASSFFGVTLGLFDYLADLFK---------IDNSHGG-RFKTVLLTFLPPALLYLIFPNGFIYGIGGAGL 354 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCCcccc-ceeeehhhHhhhHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777777777666665555443321 1111101 11123344455555565555444444444444
Q ss_pred HHHHHHHHHHHHHhhc
Q 010659 257 LLAFTMVAISVLILRY 272 (505)
Q Consensus 257 li~y~~v~~a~i~lR~ 272 (505)
........+.....|+
T Consensus 355 ~~~il~~ilP~lM~~~ 370 (415)
T PRK09664 355 CATIWAVIIPAVLAIK 370 (415)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.34 E-value=0.0002 Score=75.22 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf 106 (505)
...+.+.++...+.+.|.|...|++.++...+++.++..+.....+.+.++....+ . +..-++.+..+.+++|
T Consensus 122 ~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~----~---~~~~~~~~iPvl~~SF 194 (403)
T PRK15132 122 AGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTLP----L---QQGLALSAIPVIFTSF 194 (403)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCC----c---cccHHHHHHHHHHHHh
Confidence 45666666777788889999999999999999988877766666555544443111 1 1112677888888898
Q ss_pred hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC----CCCC---cHHHHHH-HhchhHHHHH
Q 010659 107 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPDT---PISSAFA-SHGMHWASYV 178 (505)
Q Consensus 107 ~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l----~~~~---p~~~a~~-~~g~~~~~~i 178 (505)
.=...++.+..-.++-+|++.|++..+..+..++|++-..+..+..|.++. +.+. +..+.++ ..+.++...+
T Consensus 195 gfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 274 (403)
T PRK15132 195 GFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELA 274 (403)
T ss_pred hCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHH
Confidence 888899999998887778899999999999999999999999999987764 1122 3333333 3567888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010659 179 ITIGAVTALCSTLMGSILPQPRILMAMA 206 (505)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~~sR~l~amA 206 (505)
..+...+++.++..+...+....+..+-
T Consensus 275 ~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 275 VHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777777666543
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.32 E-value=0.00026 Score=74.82 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=114.9
Q ss_pred CCCCchhHHhhhccCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCC
Q 010659 4 GSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL 83 (505)
Q Consensus 4 g~~~~~~~~~~~~~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~ 83 (505)
+.++.+++.+.....-+ .....+..+++...+..+.+.|.+..-|.+..+...+++.++++....+.+.+..+......
T Consensus 108 ~~g~~l~~~~~~~~~~~-~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~ 186 (415)
T COG0814 108 GIGNLLASFLGNQFGLN-PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPS 186 (415)
T ss_pred cchhHHHHHHHhhcccC-CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccc
Confidence 56677777776422111 13456677788888888999999999999999999999988888777665543332221100
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010659 84 PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD-LPLGIGTALSICCALYMLVSIVIVGLVPYY 155 (505)
Q Consensus 84 ~~~~~p~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~-iPrai~~si~i~~vlYil~~~~l~~~~p~~ 155 (505)
.+ +..+..++.++.+++++|.+.-.+..+.+|.|++.|+ ++|++..+..+..++|+...+...+..+.+
T Consensus 187 ~~---~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 187 AS---QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred cc---hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 10 3456678899999999999999999999999988877 999999999999999999999988888866
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.01 E-value=0.00073 Score=71.19 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCC-C-CCCCCch-hHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-P-TGYFPFG-VNGMLAGSAT 101 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~-~-~~~~p~g-~~gil~g~~~ 101 (505)
..+.++++++++..+...|.|...|++.++...+++.++.+.+..+.+.+.++...... . +.....+ ...++.+..+
T Consensus 138 r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv 217 (443)
T PRK13629 138 RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISI 217 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999988888887665555432211 0 1110111 1236677777
Q ss_pred HHHhhhhhhhHhhhhhh----hc------CcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC----CCCCc-HHHH
Q 010659 102 VFFAFIGFDAVASTAEE----VK------NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPDTP-ISSA 166 (505)
Q Consensus 102 ~~faf~G~e~i~~~aeE----~k------nP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l----~~~~p-~~~a 166 (505)
.+++|.=.-.++.++.. .+ +.+|+.-|++..+..+..++|++-.++..+..|.+++ +.+.+ +...
T Consensus 218 ~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~L 297 (443)
T PRK13629 218 MVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYL 297 (443)
T ss_pred HHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHH
Confidence 78777666666666554 32 2247788999999999999999999999999998875 23334 4444
Q ss_pred HHHhch---------hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 010659 167 FASHGM---------HWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 208 (505)
Q Consensus 167 ~~~~g~---------~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArD 208 (505)
.+.... ++...+..+...+++.++..+...+.--.+..+.++
T Consensus 298 a~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 298 ANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 566777777777778888877777777777666643
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.79 E-value=0.004 Score=63.43 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=122.3
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHH
Q 010659 17 QIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGML 96 (505)
Q Consensus 17 ~~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil 96 (505)
-.|.-+.+ .+...+++.+......|.+..+|.+.+.....++.++.+........+..+. .+..+.|+..++
T Consensus 107 ~lp~TP~~--~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l------~P~~~~g~~~i~ 178 (320)
T PF03845_consen 107 LLPETPIW--VIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDNL------LPVLESGIKPIL 178 (320)
T ss_pred hcCcCCHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHe------eCcccCChHHHH
Confidence 34544443 3566667777888889999999987777777666655555444432222222 234566788899
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhchh-H
Q 010659 97 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMH-W 174 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~~-~ 174 (505)
.|.....+.|.|+|.........|||+| ..|+...+...++++|.+..+...+..+.+.. ....|.....+....+ .
T Consensus 179 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~f 257 (320)
T PF03845_consen 179 KGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDF 257 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHH
Confidence 9988899999999999999999999754 68999999999999999988888888776654 3455777776665332 2
Q ss_pred H---HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 010659 175 A---SYVITIGAVTALCSTLMGSILPQPRILMA 204 (505)
Q Consensus 175 ~---~~iv~~~~~~~~~~~~~~~~~~~sR~l~a 204 (505)
. ..++...-+.+.+......+++..+.+-.
T Consensus 258 ieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 258 IERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22333333444555555666666665543
No 52
>PHA02764 hypothetical protein; Provisional
Probab=97.54 E-value=0.0046 Score=61.46 Aligned_cols=103 Identities=23% Similarity=0.230 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhchhH
Q 010659 95 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 174 (505)
Q Consensus 95 il~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~~ 174 (505)
+..+.....-+|.=.|+....++|.||-+|....+-..+...+.++-+..+. .+ +..
T Consensus 183 ~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~sy--------~n------~~i--------- 239 (399)
T PHA02764 183 LLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDSY--------SN------LNI--------- 239 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhh--------hh------HHH---------
Confidence 3445555566777789999999999999999888888888777666554431 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcc
Q 010659 175 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPV 226 (505)
Q Consensus 175 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~ 226 (505)
.-+.+.+-.++-+....--+||+.++||-|+.+|+.|+|+||+ +|+
T Consensus 240 ----l~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~n--v~~ 285 (399)
T PHA02764 240 ----LFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINPN--VLL 285 (399)
T ss_pred ----HHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCCC--cee
Confidence 1111222334444445556899999999999999999999985 777
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.15 E-value=0.17 Score=51.07 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=61.4
Q ss_pred hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhchhHHHHHHHHHHHHH
Q 010659 107 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTA 186 (505)
Q Consensus 107 ~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~~~~~ 186 (505)
..+-....+++|+++ +|+.-+|-..+-++.+++..+....+....| +-.+.|-|.....+... +....++.+...+.
T Consensus 193 ~~~avLv~lg~~~~~-~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~ 269 (349)
T COG3949 193 VAVAVLVPLGGRMES-RKVSGIGGLIGGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLE 269 (349)
T ss_pred hHhHhhhhhcccccc-cchhhhhhhhhhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 444556677899998 5677788888888888888888887776554 22245668877777665 55556666777777
Q ss_pred HHHHHHHhhhH
Q 010659 187 LCSTLMGSILP 197 (505)
Q Consensus 187 ~~~~~~~~~~~ 197 (505)
+.++..+.+++
T Consensus 270 IytT~vg~iy~ 280 (349)
T COG3949 270 IYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHH
Confidence 77777666655
No 54
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.92 E-value=0.24 Score=52.34 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc-hhHHHHHHH----H
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF-GVNGMLAGS----A 100 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~-g~~gil~g~----~ 100 (505)
-+..+++..+...+.+..-|...++-.+++=+.++.++++++.++.....+...+ . +.+... -..|+..|- +
T Consensus 119 ~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~-~--~~y~~~~f~~Gf~eGY~TMD~ 195 (427)
T PF05525_consen 119 LIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAP-S--GAYASNPFFKGFLEGYQTMDA 195 (427)
T ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc-c--hhhhhhHHHHHHHHHHhhhhH
Confidence 3455666666777777888888888888888888888888888887543221111 0 011110 112333321 2
Q ss_pred HHHHhhhhhhhHhhhhhhhcCcCCchhHHHHH----HHHHHHHHHHHHHHHHHhhccC--CcCCCCCcHHHHHHHhchhH
Q 010659 101 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGT----ALSICCALYMLVSIVIVGLVPY--YEMDPDTPISSAFASHGMHW 174 (505)
Q Consensus 101 ~~~faf~G~e~i~~~aeE~knP~k~iPrai~~----si~i~~vlYil~~~~l~~~~p~--~~l~~~~p~~~a~~~~g~~~ 174 (505)
.+-..|.+.=..+--....+| +|++.|.+.. +.....++|....+.=...... ++.+..+.+..+.++..|+.
T Consensus 196 laal~Fg~iIi~~i~~~g~~~-~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~ 274 (427)
T PF05525_consen 196 LAALAFGIIIINAIRQKGYKD-KKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSA 274 (427)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChh
Confidence 222333333222222233333 2334444444 4444445565544432211111 11233345666777788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcch-HHHHHHHHHHHHHHHhcHHHHHHHHH
Q 010659 175 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVK-STIVTGIVAAALAFFMDVSALAGMVS 253 (505)
Q Consensus 175 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~-Ail~~~vl~~il~~~~~~~~l~~l~s 253 (505)
+..++.+.+.++++++..+-..+.+..... ..+| .+++ .+.+.++++.+++ ...++.+.+++.
T Consensus 275 G~~ll~iiv~lACLTTaIGL~~a~a~yf~~-------------~~~k--isY~~~v~i~~i~S~~ia-n~Gl~~Ii~~s~ 338 (427)
T PF05525_consen 275 GQILLGIIVFLACLTTAIGLISACAEYFSE-------------LFPK--ISYKVWVIIFTIFSFIIA-NLGLDQIIKISV 338 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhcc--cChHHHHHHHHHHHHHHH-HhCHHHHHHHHH
Confidence 999999999999999999888888876543 3332 3333 4444556666555 345777777665
Q ss_pred HHHHHHH
Q 010659 254 VGTLLAF 260 (505)
Q Consensus 254 ~~~li~y 260 (505)
=...+.|
T Consensus 339 PiL~~iY 345 (427)
T PF05525_consen 339 PILMFIY 345 (427)
T ss_pred HHHHHHh
Confidence 4444444
No 55
>PLN03074 auxin influx permease; Provisional
Probab=96.77 E-value=0.2 Score=53.92 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHH
Q 010659 91 GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIV 147 (505)
Q Consensus 91 g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~ 147 (505)
++..++.|+..++|+|.|.-.....-.|+|||++ .++....+...+..+|+..++.
T Consensus 231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~ 286 (473)
T PLN03074 231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPSAAA 286 (473)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHHHHe
Confidence 4556777777889999999999999999999965 8888788888788887776543
No 56
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=96.73 E-value=0.56 Score=50.81 Aligned_cols=235 Identities=15% Similarity=0.090 Sum_probs=115.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-----CCCcCCCCCCCCchh
Q 010659 18 IPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTG-----WSGYELPTGYFPFGV 92 (505)
Q Consensus 18 ~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~-----~~~~~~~~~~~p~g~ 92 (505)
.|+...++..+++++++.+..+.-+|....+++- +=+.++-++.+.+.|+....++. .++...-.=+..+++
T Consensus 125 ~p~~~~~Vv~it~~ILv~LF~iQ~~GT~~ig~~F---gPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~ 201 (534)
T PF02705_consen 125 TPSLEPYVVPITIAILVGLFAIQRFGTAKIGKLF---GPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGW 201 (534)
T ss_pred CCCCcceehhHHHHHHHHHHHHHhhhhhHHHHHH---hHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCC
Confidence 5677788888999999999999999987776653 33333334444445554332210 110000000011222
Q ss_pred HHHHHHHHHHHHhhhhhhhHh-hhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhc
Q 010659 93 NGMLAGSATVFFAFIGFDAVA-STAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHG 171 (505)
Q Consensus 93 ~gil~g~~~~~faf~G~e~i~-~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g 171 (505)
.|+ ..+..++.+.+|-|+.- .++ +-.+|+|-++-..-+.-+.++.=+..-+.....|. +.++|+.. ..
T Consensus 202 ~~~-~~LG~V~L~~TGaEALyADmG---Hfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~---~~~npFf~----~~ 270 (534)
T PF02705_consen 202 IGF-FVLGAVFLCVTGAEALYADMG---HFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPE---AVSNPFFL----LI 270 (534)
T ss_pred chh-hhcchHHHHHhhHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcc---hhhhHHHH----Hh
Confidence 222 23456788899999884 332 22355565555543333333222222222222221 12344443 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCCC--C--CcchHHHHHHHHHHHHHHHhcHH
Q 010659 172 MHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKTT--Q--VPVKSTIVTGIVAAALAFFMDVS 246 (505)
Q Consensus 172 ~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r~--~--tP~~Ail~~~vl~~il~~~~~~~ 246 (505)
..|..+-+.+.+.++..-+.-+.+.+.--+....-+-|.+|+. ..+.+++. + .|...-++...+..+...+.+-+
T Consensus 271 P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~ 350 (534)
T PF02705_consen 271 PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSS 350 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChH
Confidence 3344443333322222222233333444555566788999952 22233331 3 35443333333333334455778
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010659 247 ALAGMVSVGTLLAFTMVAIS 266 (505)
Q Consensus 247 ~l~~l~s~~~li~y~~v~~a 266 (505)
.+.+...++.....+++.+-
T Consensus 351 ~la~AYGiAVt~tM~iTT~L 370 (534)
T PF02705_consen 351 NLAAAYGIAVTGTMLITTIL 370 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888776666655443
No 57
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.66 E-value=0.24 Score=52.32 Aligned_cols=110 Identities=23% Similarity=0.216 Sum_probs=73.4
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhhhhhhhHh
Q 010659 34 LIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVA 113 (505)
Q Consensus 34 ~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf~G~e~i~ 113 (505)
.+.-.+.+.-+|..+++.-...+.++..++.+.+.-......- + +..+.+.+. ++.++-..++.+.|+|-|.-.+-
T Consensus 186 ~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~-~-~~~~~~~~~--~~~~~~lf~GtaifafEGig~VL 261 (449)
T KOG1304|consen 186 QLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDL-P-PTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVL 261 (449)
T ss_pred HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcc-C-Ccccccccc--chhhhHHHHHHHHHHhccceEEE
Confidence 3333344445566666666666666666665555544332211 1 222222222 36677778889999999999999
Q ss_pred hhhhhhcCcCCchh---HHHHHHHHHHHHHHHHHHHHH
Q 010659 114 STAEEVKNPQRDLP---LGIGTALSICCALYMLVSIVI 148 (505)
Q Consensus 114 ~~aeE~knP~k~iP---rai~~si~i~~vlYil~~~~l 148 (505)
.+=+++|+|++ .| ..+-.++.+++++|+...+.=
T Consensus 262 PlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~G 298 (449)
T KOG1304|consen 262 PLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFG 298 (449)
T ss_pred ehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 66 899999999999998876543
No 58
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.41 E-value=0.93 Score=48.08 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCC--CCchhHHHHHH------
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY--FPFGVNGMLAG------ 98 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~--~p~g~~gil~g------ 98 (505)
+.++++..+..++.+..-|...++-.+++=+.++.++++++.++...... ..+. .+.+ .|+ ..|+..|
T Consensus 124 ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~-~~~~--~~~y~~~~f-~~Gf~eGY~TMDa 199 (439)
T PRK15433 124 IYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGS-ISTA--TEAYQNAAF-SNGFVNGYLTMDT 199 (439)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCc--chhhhhhhH-HHHHHhhHHHHHH
Confidence 35566666666677777788888888888888888888888888763221 1100 0111 111 1222222
Q ss_pred HHHHHHhhhhhhhHhhhhhhhcCcCCchhHHH----HHHHHHHHHHHHHHHHHHHhhcc-CCcC-CCCCcHHHHHHHhch
Q 010659 99 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGI----GTALSICCALYMLVSIVIVGLVP-YYEM-DPDTPISSAFASHGM 172 (505)
Q Consensus 99 ~~~~~faf~G~e~i~~~aeE~knP~k~iPrai----~~si~i~~vlYil~~~~l~~~~p-~~~l-~~~~p~~~a~~~~g~ 172 (505)
++...|+..=.+++ -....+|+ |.+-|.+ ..+.....++|....+.=....+ .++. +..+-.....+...+
T Consensus 200 laal~Fg~iii~~i--~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G 276 (439)
T PRK15433 200 LGAMVFGIVIVNAA--RSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG 276 (439)
T ss_pred HHHHHHHHHHHHHH--HHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhC
Confidence 33333332222332 23334443 3344444 34444445556555443222212 1111 122223344556678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcch-HHHHHHHHHHHHHHHhcHHHHHHH
Q 010659 173 HWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVK-STIVTGIVAAALAFFMDVSALAGM 251 (505)
Q Consensus 173 ~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~-Ail~~~vl~~il~~~~~~~~l~~l 251 (505)
+++..++.+.+.++++++..+...+.++-....- | .+++ ..++.++++.+++-+ .++.++++
T Consensus 277 ~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~-----~-----------isY~~~v~i~~l~S~~lSn~-G~~~II~~ 339 (439)
T PRK15433 277 GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV-----P-----------LSYRTLVFILGGFSMVVSNL-GLSQLIQI 339 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----C-----------CcHHHHHHHHHHHHHHHHHh-HHHHHHHH
Confidence 8999999999999999999998888887543211 1 2222 344445555554433 35665555
Q ss_pred HH----HHHHHHHHHHHHHHHHhhc
Q 010659 252 VS----VGTLLAFTMVAISVLILRY 272 (505)
Q Consensus 252 ~s----~~~li~y~~v~~a~i~lR~ 272 (505)
.. +.+-++-.++.++++..+.
T Consensus 340 s~PiL~~iYP~~IvLill~l~~~~~ 364 (439)
T PRK15433 340 SVPVLTAIYPPCIALVVLSFTRSWW 364 (439)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 44 3333444555555554333
No 59
>PRK11375 allantoin permease; Provisional
Probab=96.06 E-value=2.4 Score=45.94 Aligned_cols=197 Identities=17% Similarity=0.139 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCC--CCCCC--CchhHHHHHHHHHHHHhh
Q 010659 31 ILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYF--PFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 31 ~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~--~~~~~--p~g~~gil~g~~~~~faf 106 (505)
++.++.+.+...|.|...+++.+...+.++.++...+..+... ++.+..+ +.+.. ......+..++...+-++
T Consensus 164 i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~ 240 (484)
T PRK11375 164 IFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVW 240 (484)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhccCcccccCCcchHHHHHHHHHHHHHHH
Confidence 3344555566789999999998888777665555444444332 2221110 00000 011223444443333333
Q ss_pred h-hhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHH-HHHhhccCCcCCCCCcHHHHHHHhchhHHHHHHHHHHH
Q 010659 107 I-GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSI-VIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAV 184 (505)
Q Consensus 107 ~-G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~-~l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~~~ 184 (505)
. +.-..+..+...|+++. .-++...+..+...+...... ...+..........+| ..+....+..++..+..+..+
T Consensus 241 ~~~~~~~~D~tRy~k~~~~-~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v 318 (484)
T PRK11375 241 AAPAVSASDFTQNAHSFRA-QALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVIL 318 (484)
T ss_pred HHHHccccchhcccCChhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHH
Confidence 3 44456778888888644 345555555554444322222 2222111111112333 333333333334444444445
Q ss_pred HHHHHHHH-HhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcH
Q 010659 185 TALCSTLM-GSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV 245 (505)
Q Consensus 185 ~~~~~~~~-~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~ 245 (505)
++..+.-. ..+++.+ +.-.+++||.+ |+| ++.++.++++.++..+..+
T Consensus 319 ~a~~~tN~~~N~ys~~-----~~l~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~~~ 367 (484)
T PRK11375 319 MTTISTNATGNIIPAG-----YQIAALAPTKL---TYK-----NGVLIASIISLLICPWKLM 367 (484)
T ss_pred HHHHHHHHHhhcccHH-----HHHHHhCcCcc---chh-----hHHHHHHHHHHHhccHHHh
Confidence 55555422 3444433 33456778643 333 3667777777665544433
No 60
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.01 E-value=0.37 Score=51.21 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=85.2
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhhhhhhhHhhhhhhhc
Q 010659 41 CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 120 (505)
Q Consensus 41 ~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf~G~e~i~~~aeE~k 120 (505)
+-..+.-.++..+..+..+......++.+....-..+... .......+.+. .+.+++...|+|.|--...+.=..+|
T Consensus 179 lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~-~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk 255 (437)
T KOG1303|consen 179 LPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPS-GGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMK 255 (437)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcc-cCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhcC
Confidence 3344555556655566665555555566665432211110 00011111111 16788888999999999999999999
Q ss_pred CcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHh-chhHHHHHHHHHHHHHHHHHH
Q 010659 121 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTL 191 (505)
Q Consensus 121 nP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~-g~~~~~~iv~~~~~~~~~~~~ 191 (505)
+|+| +.|+.+.+..+++.+|+.++..-..+.+.+.. + +..... ...|.....++.+.+-.+++.
T Consensus 256 ~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~--~----~il~s~~~p~~~~~~ani~i~~h~i~s~ 320 (437)
T KOG1303|consen 256 SPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP--D----NILLSLQPPTWLIALANILIVLHLIGSY 320 (437)
T ss_pred Cchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc--h----hhhhcccCchhHHHHHHHHHHHHHhhhh
Confidence 9998 99999999999999999988765444433221 1 112222 245655555565555555443
No 61
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.84 E-value=1.1 Score=46.40 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=38.0
Q ss_pred CcHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010659 161 TPISSAFASHGM-HWASYVITIGAVTALCSTLMGSILPQPRILMAMA 206 (505)
Q Consensus 161 ~p~~~a~~~~g~-~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amA 206 (505)
+...++++...| +++..++.++.+.+.+++..+...+.++.+...-
T Consensus 239 ~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 239 AQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 356667777777 7999999999999999999999888888776543
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=95.56 E-value=0.011 Score=62.07 Aligned_cols=62 Identities=19% Similarity=0.413 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhhhhhhhcCcCC--chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010659 90 FGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR--DLPLGIGTALSICCALYMLVSIVIVGL 151 (505)
Q Consensus 90 ~g~~gil~g~~~~~faf~G~e~i~~~aeE~knP~k--~iPrai~~si~i~~vlYil~~~~l~~~ 151 (505)
..+.++..++....|+|.|...+....+|+|+|+| ++.|+...+..+++++|.+....-...
T Consensus 189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 252 (409)
T PF01490_consen 189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLA 252 (409)
T ss_pred chhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccce
Confidence 45668889999999999999999999999999875 466999999999999999887764443
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=95.32 E-value=4.8 Score=42.80 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf 106 (505)
+..+++-++.+...++|.|...+++.+.....++..+..+...+-... ........+ |..+..++.+.+.++-.+
T Consensus 132 ~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~--~~~~~~~~~---~~~~~~fl~a~slv~g~~ 206 (442)
T COG1457 132 AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKG--GLDALWVKG---PTSPLSFLSALSLVIGSF 206 (442)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccceeeccC---CCcchhHHHHHHHHHHHH
Confidence 344555557778889999999999999998888777766665553111 111111111 233444555555555444
Q ss_pred hhh-hhHhhhhhhhcCcC
Q 010659 107 IGF-DAVASTAEEVKNPQ 123 (505)
Q Consensus 107 ~G~-e~i~~~aeE~knP~ 123 (505)
..| --++..+.=.|+|+
T Consensus 207 ~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 207 ASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HhhhhhhhhhhhhcCCCc
Confidence 444 34466666667655
No 64
>PTZ00206 amino acid transporter; Provisional
Probab=95.17 E-value=2.4 Score=45.70 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhhhhcCcC-CchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010659 94 GMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVIVGLV 152 (505)
Q Consensus 94 gil~g~~~~~faf~G~e~i~~~aeE~knP~-k~iPrai~~si~i~~vlYil~~~~l~~~~ 152 (505)
..+.++....|+|.+--.....-+|+|||. |+..+.+..+..++.++|.+..+.--...
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~f 316 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDF 316 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 467889999999999999999999999974 67889999999999999988776544333
No 65
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.14 E-value=4.6 Score=42.71 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCCCCcCCCCCCCCch-hHHHHHHHHHHHHhh
Q 010659 30 AILVLIVTGLLCVGIKE-STIAQAIVTTANVLAMLFVIIAGSYLGF-KTGWSGYELPTGYFPFG-VNGMLAGSATVFFAF 106 (505)
Q Consensus 30 i~il~l~~~in~~Gvk~-~~~~~~i~~i~~i~~l~~~ii~~~~~~~-~~~~~~~~~~~~~~p~g-~~gil~g~~~~~faf 106 (505)
.+++++...+..+|+|. .+|.+.++.=...+.++++.+=.+.... ..+.... -.+++.... ...+..++..+||+.
T Consensus 149 ~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~-l~PD~s~l~~~~v~~~AlGQ~FFsL 227 (439)
T COG0733 149 LLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFL-FKPDFSKLTDPKVWLAALGQAFFSL 227 (439)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHH-hcCCHHHcCchhhHHHHHHHHHHHH
Confidence 44455556667789876 7788877765555555444443333211 0010000 001121111 445778888899888
Q ss_pred -hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCC-------cHHHHHHHhc-hhHHHH
Q 010659 107 -IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDT-------PISSAFASHG-MHWASY 177 (505)
Q Consensus 107 -~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~-------p~~~a~~~~g-~~~~~~ 177 (505)
.|+-...+++.=.++ +.|+++.-......-+.+-++..+.+.-..-.-..+.++ .++.+|.+.+ +.....
T Consensus 228 SlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~ 306 (439)
T COG0733 228 SLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGI 306 (439)
T ss_pred HHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHH
Confidence 688888888877765 788888777766666555544444332221111111111 3566777775 223333
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010659 178 VITIGAVTALCSTLMGS 194 (505)
Q Consensus 178 iv~~~~~~~~~~~~~~~ 194 (505)
++-...+.+.+++..+.
T Consensus 307 lFFl~l~fAalTS~iSm 323 (439)
T COG0733 307 LFFLLLLFAALTSAISM 323 (439)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 66
>PLN00151 potassium transporter; Provisional
Probab=94.80 E-value=2.9 Score=47.40 Aligned_cols=226 Identities=14% Similarity=0.112 Sum_probs=103.8
Q ss_pred CCCC-CcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc------
Q 010659 18 IPGL-GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF------ 90 (505)
Q Consensus 18 ~p~~-~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~------ 90 (505)
.|.. +.++..+++++++.+..+.-+|....+++-. =+.++-++.+...|++...+++..-+ ..+.|.
T Consensus 266 ~p~l~~~~VV~Is~~ILv~LF~~Q~~GT~kVg~~Fg---PImllWFl~i~~iGiynI~~~~p~Vl---~AlnP~Y~~~Ff 339 (852)
T PLN00151 266 VPGFGQDAVVMISVAFLVILFSVQRFGTSKVGFAFG---PALALWFCSLGGIGIYNLVKYDSSVF---RAFNPVYIYYFF 339 (852)
T ss_pred CCcCCCCeehhHHHHHHHHHHHHHhccchhhhhhhc---cHHHHHHHHHHHHHHHHHHhcCHHHH---hhhCHHHHHHHH
Confidence 3555 5677788999999999999999876665433 23333333444444443322211100 011121
Q ss_pred ---hhHHHHHHHHHHHHhhhhhhhH-hhhhhhhcCcCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCCCcHHH
Q 010659 91 ---GVNGMLAGSATVFFAFIGFDAV-ASTAEEVKNPQRDLPLGIGTALSICCAL-YMLVSIVIVGLVPYYEMDPDTPISS 165 (505)
Q Consensus 91 ---g~~gil~g~~~~~faf~G~e~i-~~~aeE~knP~k~iPrai~~si~i~~vl-Yil~~~~l~~~~p~~~l~~~~p~~~ 165 (505)
+..|+ ..+.-++.+.+|-|+. +.++. -.+|.|-+|-..-+.-+.++ |+.- .+....-|. +..+|+..
T Consensus 340 ~~~~~~gw-~~LGgVvLciTGaEALfADLGH---Fg~~sIqiaw~~~V~P~LlL~Y~GQ-aA~L~~~p~---~~~npFy~ 411 (852)
T PLN00151 340 KRNSTKAW-SALGGCVLCATGSEAMFADLGY---FSVRSIQLAFTCLVLPCLLLAYMGQ-AAYLMKNPD---SAEQIFFS 411 (852)
T ss_pred HhCCCceE-EEecceeeeeccchhhhcccCC---CCccceeeeehhhHHHHHHHHHcch-HHHHhcCcc---cccCcHHH
Confidence 11111 1234457788999987 33332 23455555544433333333 3332 222222221 12344432
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCC--CC--CcchHHHHHHHHHHHHH
Q 010659 166 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALA 240 (505)
Q Consensus 166 a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r--~~--tP~~Ail~~~vl~~il~ 240 (505)
...++..|-+.+.+.++.+-+.-+.+.+.-.+....-+=|.+|+. .-+.+++ .+ .|...-+++..+.++..
T Consensus 412 ----svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l 487 (852)
T PLN00151 412 ----SVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVC 487 (852)
T ss_pred ----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhhee
Confidence 233344333322222222222222233333444455677999942 2223333 12 34433333333323333
Q ss_pred HHhcHHHHHHHHHHHHHHHHH
Q 010659 241 FFMDVSALAGMVSVGTLLAFT 261 (505)
Q Consensus 241 ~~~~~~~l~~l~s~~~li~y~ 261 (505)
.+.+-+.+.+...++.....+
T Consensus 488 ~F~~s~~l~~AYGiAV~~vM~ 508 (852)
T PLN00151 488 SFRSITDIGNAYGIAEVGVMM 508 (852)
T ss_pred eecCHHHHHHHhhhhhhhhhh
Confidence 345677788777766544443
No 67
>PLN00149 potassium transporter; Provisional
Probab=94.71 E-value=7.1 Score=44.21 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc---------hhHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNGML 96 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~---------g~~gil 96 (505)
-.+++++++.+..+.-+|....+++- +=+.++-++.+...|++...+.+..-. ..+.|. +..|+
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~F---gPIml~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~f~~~~~~~g~- 271 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFLF---APVVLTWLLCISAIGVYNIFHWNPHVY---QALSPYYMYKFLKKTQRGGW- 271 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHHhcCHhHh---hhcCHHHHHHHHHHCCCcee-
Confidence 56888889989999999987665543 333334444444455543322211110 112221 11111
Q ss_pred HHHHHHHHhhhhhhhH-hhhhhhhcCcCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCCCcHHHHHHHhchhH
Q 010659 97 AGSATVFFAFIGFDAV-ASTAEEVKNPQRDLPLGIGTALSICCAL-YMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 174 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i-~~~aeE~knP~k~iPrai~~si~i~~vl-Yil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~~ 174 (505)
..+.-++.+.+|-|+. +.++. -.+|.|-+|-..-+.-+.++ |+.- .+....-|...-+..+|+.. ...+|
T Consensus 272 ~~LGgV~L~iTG~EALyADlGH---F~~~~Ir~aw~~~V~P~L~L~Y~GQ-aA~l~~~p~~~~~~~~pFy~----~iP~~ 343 (779)
T PLN00149 272 MSLGGILLCITGSEAMFADLGH---FSQLSIKIAFTSLVYPSLILAYMGQ-AAYLSKHHVIESDYRIGFYV----SVPEK 343 (779)
T ss_pred EeecchhhcccchhhhhhcccC---CCccceeeeehhhHHHHHHHHhhhH-HHHHhcCcchhccccCcHHH----hCCch
Confidence 1244467889999987 33332 33555655555433333333 4332 22222222211122335433 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCC--CC--CcchHHHHHHHHHHHHHHHhcHHHHH
Q 010659 175 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSALA 249 (505)
Q Consensus 175 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r--~~--tP~~Ail~~~vl~~il~~~~~~~~l~ 249 (505)
..|-+.+.+.++.+-+.-+.+.+.-.+....-+=|.+|+. .-+.+++ .+ .|...-+++..+.++...+.+-+.+.
T Consensus 344 ~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~ 423 (779)
T PLN00149 344 LRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLG 423 (779)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHH
Confidence 4443333332222222223333333445555677999942 2223332 23 34433333322222333345677787
Q ss_pred HHHHHHHHHHH
Q 010659 250 GMVSVGTLLAF 260 (505)
Q Consensus 250 ~l~s~~~li~y 260 (505)
+...++.....
T Consensus 424 ~AYGiAV~~vM 434 (779)
T PLN00149 424 NASGLAVITVM 434 (779)
T ss_pred HHhhhhhehHH
Confidence 77766654433
No 68
>PLN00148 potassium transporter; Provisional
Probab=94.62 E-value=4.5 Score=45.77 Aligned_cols=225 Identities=14% Similarity=0.103 Sum_probs=105.2
Q ss_pred CCCC-CcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc------
Q 010659 18 IPGL-GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF------ 90 (505)
Q Consensus 18 ~p~~-~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~------ 90 (505)
.|+. ..++..+++++++.+..+.-+|....+++- +=+.++-++.+...|++...+.+..-. ..+.|.
T Consensus 189 ~p~~~~~~vv~is~~ILv~LF~vQ~~GT~kVg~~F---gPIm~lWf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff 262 (785)
T PLN00148 189 ETKLTDGELVLLACVILVGLFALQHCGTHRVAFMF---APIVIIWLLSIGSIGLYNIIHWNPKII---HALSPYYIIKFF 262 (785)
T ss_pred CCCCCCCeehhHHHHHHHHHHHHhccccHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcCHHHh---hhcCHHHHHHHH
Confidence 4555 567778999999999999999987666543 333333344444445543322211110 112221
Q ss_pred ---hhHHHHHHHHHHHHhhhhhhhH-hhhhhhhcCcCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCCCcHHH
Q 010659 91 ---GVNGMLAGSATVFFAFIGFDAV-ASTAEEVKNPQRDLPLGIGTALSICCAL-YMLVSIVIVGLVPYYEMDPDTPISS 165 (505)
Q Consensus 91 ---g~~gil~g~~~~~faf~G~e~i-~~~aeE~knP~k~iPrai~~si~i~~vl-Yil~~~~l~~~~p~~~l~~~~p~~~ 165 (505)
+..|+ ..+.-++.+.+|-|+. +.++. -.+|.|-+|-..-+.-+.++ |+.- .+....-| + +.++|+..
T Consensus 263 ~~~~~~g~-~~LGgV~L~iTGaEALyADlGH---Fg~~~Iriaw~~~V~P~L~L~Y~GQ-aA~ll~~p-~--~~~npFf~ 334 (785)
T PLN00148 263 RVTGKDGW-ISLGGILLSITGTEAMFADLGH---FTAASIRLAFATVIYPCLVVQYMGQ-AAFLSKNI-P--SIPNSFYD 334 (785)
T ss_pred HhCCCceE-EeecchheeccchhhhhhhccC---CCccceEEeeeehHHHHHHHHHcch-HHHHhcCc-c--cccCcHHH
Confidence 11111 1234467888999987 44433 23455555544333333333 3332 22222222 1 22445433
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCC--CC--CcchHHHHHHHHHHHHH
Q 010659 166 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALA 240 (505)
Q Consensus 166 a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r--~~--tP~~Ail~~~vl~~il~ 240 (505)
...++..+-+.+.+.++.+-+.-+.+.+.-.+....-+=|.+|+. .-+.+++ .+ .|...-+++..+.++..
T Consensus 335 ----~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~ 410 (785)
T PLN00148 335 ----SIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTI 410 (785)
T ss_pred ----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhhe
Confidence 233344343333222222222222333333444555677999942 2233333 23 34433333333333333
Q ss_pred HHhcHHHHHHHHHHHHHHHH
Q 010659 241 FFMDVSALAGMVSVGTLLAF 260 (505)
Q Consensus 241 ~~~~~~~l~~l~s~~~li~y 260 (505)
.+.+-+.+.+...++.....
T Consensus 411 ~F~~s~~la~AYGiAV~~vM 430 (785)
T PLN00148 411 GFRDTTLIGNAYGLACMTVM 430 (785)
T ss_pred eeccchhHHHhhhhheeeHH
Confidence 34566777777766544333
No 69
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=94.61 E-value=7.5 Score=41.45 Aligned_cols=102 Identities=17% Similarity=-0.041 Sum_probs=46.9
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh-hhhhhHhhhhhh
Q 010659 40 LCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF-IGFDAVASTAEE 118 (505)
Q Consensus 40 n~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf-~G~e~i~~~aeE 118 (505)
...|.|...+.+.......++.+++.+................. ..-.+.+...++.++..+.-.+ ++.-.++..+..
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy 233 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTG-TLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF 233 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCC-CCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh
Confidence 45566766666666555554444444333221111111110000 0011223344555555544333 444567888888
Q ss_pred hcCcCCchhHHHHHHHHHHHHHHHH
Q 010659 119 VKNPQRDLPLGIGTALSICCALYML 143 (505)
Q Consensus 119 ~knP~k~iPrai~~si~i~~vlYil 143 (505)
.|+++.. .++...+.....+...+
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 234 GKSKKTA-IWGQFLALPGGFTLTCF 257 (442)
T ss_pred cCCccch-HHHHHHHHHHHHHHHHH
Confidence 8876544 45555555444444333
No 70
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=94.31 E-value=9.5 Score=42.78 Aligned_cols=228 Identities=18% Similarity=0.169 Sum_probs=108.6
Q ss_pred CCCC-CcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc------
Q 010659 18 IPGL-GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF------ 90 (505)
Q Consensus 18 ~p~~-~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~------ 90 (505)
.|+. ..++-.+++++++.+..+.-+|....+++- +=+.++-++.+.+.|+....+.+..-. ..+.|.
T Consensus 160 ~p~~~~~~Vv~it~~ILv~LF~iQ~~GT~kvg~~F---gPim~vWF~~l~~~Gi~~I~~~~P~Vl---~AlnP~ya~~f~ 233 (688)
T TIGR00794 160 APSLSDTWVVPISCIILVLLFLIQRFGTAKVGFTF---APIILVWLLLLAGIGIYNIVKFNPEVL---KALSPYYAVQFF 233 (688)
T ss_pred CCCCCCCeehhHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHHhcCHHHH---hHhCHHHHHHHH
Confidence 4666 567788899999999999999987666543 333333444444455543322111100 111121
Q ss_pred ---hhHHHHHHHHHHHHhhhhhhhH-hhhhhhhcCcCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCCCcHHH
Q 010659 91 ---GVNGMLAGSATVFFAFIGFDAV-ASTAEEVKNPQRDLPLGIGTALSICCAL-YMLVSIVIVGLVPYYEMDPDTPISS 165 (505)
Q Consensus 91 ---g~~gil~g~~~~~faf~G~e~i-~~~aeE~knP~k~iPrai~~si~i~~vl-Yil~~~~l~~~~p~~~l~~~~p~~~ 165 (505)
|..|+ ..+..++.+.+|-|+. +.++.=- +|+|-+|-..-+.-+.++ |+. .-+....-|. +..+|+..
T Consensus 234 ~~~~~~~~-~~LG~V~L~iTGaEALyADmGHFg---~~~Ir~aw~~~V~P~L~LnY~G-QgA~ll~~p~---~~~NpFf~ 305 (688)
T TIGR00794 234 IEYGTVGW-VSLGGVVLSITGVEAMFADLGHFG---KLPIQLAWFTFVYPSLILCYIG-QAAYLSKHPE---AIKNPFFL 305 (688)
T ss_pred HHCCCcee-eeccchhheeccHhhhhcccCCCC---cccceeehHHHHHHHHHHHHcc-hHHHHhcCcc---hhcCcHHH
Confidence 22221 1344567889999987 4443332 455555555333333333 333 2222222221 12455543
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCC--CCC--cchHHHHHHHHHHHHH
Q 010659 166 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQV--PVKSTIVTGIVAAALA 240 (505)
Q Consensus 166 a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r--~~t--P~~Ail~~~vl~~il~ 240 (505)
. ..+|..+-+.+.+.++..-+.-+.+.+.-.+....-+=|.+|+. ..+.+++ .+. |...-++...+.++..
T Consensus 306 ~----~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl 381 (688)
T TIGR00794 306 S----IPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTA 381 (688)
T ss_pred h----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeE
Confidence 2 33454443333222222222222233333445555678999942 2233332 233 4332232222222233
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHH
Q 010659 241 FFMDVSALAGMVSVGTLLAFTMV 263 (505)
Q Consensus 241 ~~~~~~~l~~l~s~~~li~y~~v 263 (505)
.+.+-+.+.+...++.....+++
T Consensus 382 ~F~~S~~la~AYGiaVt~tM~iT 404 (688)
T TIGR00794 382 GFRDTNNLGAAYGIAVTGTFLVT 404 (688)
T ss_pred EecChHHHHHHhhhhhhhhhHHH
Confidence 34567778877776665544444
No 71
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.27 E-value=3.4 Score=43.62 Aligned_cols=180 Identities=15% Similarity=0.139 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCc---CCCCCCCCc----hhHHHH--
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY---ELPTGYFPF----GVNGML-- 96 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~---~~~~~~~p~----g~~gil-- 96 (505)
...++++.++...+..-|+|..+++...+.=+..+.-++..+.-+.. +.++..+. .-.+.|.|. |..|..
T Consensus 140 ~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~ 218 (416)
T PF01235_consen 140 WITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIM 218 (416)
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHH
Confidence 34566666777777778888888777666544433332222221111 00110000 000112221 222211
Q ss_pred ----HHHHHHHHh---hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC---CCCcHHHH
Q 010659 97 ----AGSATVFFA---FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---PDTPISSA 166 (505)
Q Consensus 97 ----~g~~~~~fa---f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~---~~~p~~~a 166 (505)
.|+.=..|+ =.|....++.+.|+++|.|.==.+++-..+-..++..+..+.+...-.++... ..+-...+
T Consensus 219 ~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~A 298 (416)
T PF01235_consen 219 MAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAA 298 (416)
T ss_pred HHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHH
Confidence 122222232 25777888888899999876444444433333333333333333322222211 11223567
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010659 167 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 206 (505)
Q Consensus 167 ~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amA 206 (505)
|+...++++.+++.+++++-.+++.+++.+..-+.+.-+-
T Consensus 299 f~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 299 FSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777778999999999999999999999988877765544
No 72
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=94.00 E-value=9.3 Score=40.08 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--CcCCCCCCCCchh-HHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWS--GYELPTGYFPFGV-NGMLAGSAT 101 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~--~~~~~~~~~p~g~-~gil~g~~~ 101 (505)
..+.+++...+..++.+..-|...|+-.+++=++++.++.+++.++......-.. +...+.+|.. |+ .|..+-=+.
T Consensus 120 l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~-GfleGY~TMDaL 198 (431)
T COG1114 120 LFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSK-GFLEGYLTMDAL 198 (431)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHH-HHhcchHHHHHH
Confidence 4456666677777777888888888888888888888888877766543221111 0001111111 11 222222223
Q ss_pred HHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhh--ccCCcCC-CC---CcHHHHHHHhchhHH
Q 010659 102 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGL--VPYYEMD-PD---TPISSAFASHGMHWA 175 (505)
Q Consensus 102 ~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~--~p~~~l~-~~---~p~~~a~~~~g~~~~ 175 (505)
+-++|...-..+.-..-.+++ |++.|-.+.+-++..+.-.+.-.++..+ ...+... .+ .-+...-++..|+.+
T Consensus 199 Aal~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G 277 (431)
T COG1114 199 AALAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYG 277 (431)
T ss_pred HHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhh
Confidence 334444433333323333332 3455554444444433333322222222 2222111 11 123444555677888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHH--
Q 010659 176 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVS-- 253 (505)
Q Consensus 176 ~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s-- 253 (505)
..+..+.+.++++++..+-+.+.+.. |+|.-|+ =.......+..+++.+++ ...++.+..+..
T Consensus 278 ~~lL~~iv~lACLTTaiGLi~a~aef-------------F~~~~p~-~SY~~~v~if~i~sflva-n~GL~~Ii~isvPv 342 (431)
T COG1114 278 SILLGLIVFLACLTTAVGLIVACAEF-------------FSKLVPK-LSYKTWVIIFTLISFLVA-NLGLEQIIKISVPV 342 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccc-ccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 88888888888888887777666654 3343332 111223333444454443 334566555543
Q ss_pred --HHHHHHHHHHHHHHHHhhccCC
Q 010659 254 --VGTLLAFTMVAISVLILRYVPP 275 (505)
Q Consensus 254 --~~~li~y~~v~~a~i~lR~~~~ 275 (505)
+.+-++-.++.+.......+.+
T Consensus 343 L~~iYPiaI~Lv~l~~~~k~~~~~ 366 (431)
T COG1114 343 LTAIYPIAIALVLLSFARKLWKNS 366 (431)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCc
Confidence 3333444555555554444443
No 73
>PLN00150 potassium ion transporter family protein; Provisional
Probab=93.96 E-value=4.5 Score=45.70 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=105.1
Q ss_pred CCCC-CcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc------
Q 010659 18 IPGL-GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF------ 90 (505)
Q Consensus 18 ~p~~-~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~------ 90 (505)
.|+. +.++..+++++++.+..+.-+|....+++- +=+.++-++.+...|++....++..-+ ..+.|.
T Consensus 206 ~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kVg~~F---gPIm~~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff 279 (779)
T PLN00150 206 SSGLDTNLVTIISCVILVILFSLQRFGTHKVSFLF---APIFLCWFFSLALIGCYNIIKWDKSVF---LAFNPLYIVSFF 279 (779)
T ss_pred CCCCCCCeehhhHHHHHHHHHHHHhccchhhhhhh---ccHHHHHHHHHHHHHHHHHHhcCHHHH---hhcCHHHHHHHH
Confidence 3555 567778899999999999999987665543 333333444444455543322211100 011121
Q ss_pred ---hhHHHHHHHHHHHHhhhhhhhH-hhhhhhhcCcCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCCCcHHH
Q 010659 91 ---GVNGMLAGSATVFFAFIGFDAV-ASTAEEVKNPQRDLPLGIGTALSICCAL-YMLVSIVIVGLVPYYEMDPDTPISS 165 (505)
Q Consensus 91 ---g~~gil~g~~~~~faf~G~e~i-~~~aeE~knP~k~iPrai~~si~i~~vl-Yil~~~~l~~~~p~~~l~~~~p~~~ 165 (505)
|..|+ ..+.-++.+.+|-|+. +.++. -.+|.|-+|-..-+.-+.++ |+.- .+....-| + +.++|+..
T Consensus 280 ~~~~~~g~-~~LG~V~L~iTGaEALyADlGH---Fg~~~Iriaw~~~V~P~LlL~Y~GQ-aA~ll~~p-~--~~~npFf~ 351 (779)
T PLN00150 280 IRNGRQGW-ESLGGIVLCMTGTEAMFADLGH---FTVKSMQIAFTSLVYPCLLLTYLGQ-AAYLVKHM-E--DVNDPFYR 351 (779)
T ss_pred HhCCCceE-EEecceeeeecchhhhhccccC---CCccceeeeehhhHHHHHHHHHcch-HHHHhcCc-c--cccCcHHH
Confidence 11111 1234467888999987 33332 23555655554333333333 3332 22222222 1 22345433
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCC--CCC--cchHHHHHHHHHHHHH
Q 010659 166 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQV--PVKSTIVTGIVAAALA 240 (505)
Q Consensus 166 a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r--~~t--P~~Ail~~~vl~~il~ 240 (505)
...+|..+-+.+.+.++.+-+.-+.+.+.-.+....-+-|.+|+. .-+.+++ .+. |...-++...+.++..
T Consensus 352 ----~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~ 427 (779)
T PLN00150 352 ----SLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITA 427 (779)
T ss_pred ----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheE
Confidence 233344343333222222222222333333445555677999942 2233332 233 4433333222222333
Q ss_pred HHhcHHHHHHHHHHHHHHHHH
Q 010659 241 FFMDVSALAGMVSVGTLLAFT 261 (505)
Q Consensus 241 ~~~~~~~l~~l~s~~~li~y~ 261 (505)
.+.+-+.+.+...++.....+
T Consensus 428 ~F~~s~~l~~AYGiAV~~vM~ 448 (779)
T PLN00150 428 GFRDTDEIGNAYGIAVVGVMI 448 (779)
T ss_pred EecChHHHHHHhhhheehhhH
Confidence 344677787777666544333
No 74
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=93.92 E-value=11 Score=40.57 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=55.9
Q ss_pred hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHH-Hh--hccCCcCCCCCcHHHHHHHhchhHHHHHHHHHH
Q 010659 107 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI-VG--LVPYYEMDPDTPISSAFASHGMHWASYVITIGA 183 (505)
Q Consensus 107 ~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l-~~--~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~~ 183 (505)
.+.+...+-.-.+|| +|+..|+...+......++....+.- .. ..| +..+++..++....+..+++..-++..++
T Consensus 250 ~~~p~~~~R~~aak~-~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~d~~~p~~~~~~lp~~~~gl~~a~l 327 (471)
T TIGR02119 250 IGLPQTAVRCMSYKD-SKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIP-DLTVPDKVIPLLAIKVLPPILAGIFLAAP 327 (471)
T ss_pred hCchHHHHHHHhcCC-HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccchHHHHHHHHchHHHHHHHHHHH
Confidence 344444445556676 46778888887665555544433221 11 122 21234556666666667788888888888
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 010659 184 VTALCSTLMGSILPQPRI 201 (505)
Q Consensus 184 ~~~~~~~~~~~~~~~sR~ 201 (505)
+.+..++..+.+.+.+-.
T Consensus 328 laA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 328 MAAIMSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877777666544
No 75
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=93.81 E-value=6 Score=43.67 Aligned_cols=227 Identities=16% Similarity=0.115 Sum_probs=106.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc-------
Q 010659 18 IPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF------- 90 (505)
Q Consensus 18 ~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~------- 90 (505)
.|+...++-.+++++++.+..+.-+|....+++- +=+.++-++.+.+.|+..... +..-. ..+.|.
T Consensus 136 ~p~l~~~Vvpit~~ILv~LF~iQ~~GT~~vG~~F---gPIm~vWF~~i~~~Gi~~I~~-~P~Vl---~AlnP~ya~~f~~ 208 (622)
T PRK10745 136 APQLDTYIVPLSIIVLTLLFMIQKHGTGMVGKLF---APIMLTWFLTLAVLGLRSIIA-NPEVL---HALNPMWAVHFFL 208 (622)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHhc-CHHHH---hHhCHHHHHHHHH
Confidence 4667778888999999999999999987666543 333333344444445543321 11100 111221
Q ss_pred --hhHHHHHHHHHHHHhhhhhhhH-hhhhhhhcCcCCchhHHHHHHHHHHH-HHHHHHHHHHHhhccCCcCCCCCcHHHH
Q 010659 91 --GVNGMLAGSATVFFAFIGFDAV-ASTAEEVKNPQRDLPLGIGTALSICC-ALYMLVSIVIVGLVPYYEMDPDTPISSA 166 (505)
Q Consensus 91 --g~~gil~g~~~~~faf~G~e~i-~~~aeE~knP~k~iPrai~~si~i~~-vlYil~~~~l~~~~p~~~l~~~~p~~~a 166 (505)
|..|+ ..+..++.+.+|-|+. +.++.= .+|+|-++-..-+.-+. +-|+.-. +....-| -...+|+...
T Consensus 209 ~~~~~gf-~~LG~V~L~vTGaEALYADmGHF---G~~~Ir~aW~~~v~P~L~LnY~GQg-A~ll~~p---~~~~NpFf~~ 280 (622)
T PRK10745 209 EYKTVSF-FALGAVVLAITGVEALYADMGHF---GKFPIRLAWFTVVLPSLVLNYFGQG-ALLLKNP---EAIKNPFFLL 280 (622)
T ss_pred hCCCceE-EEecceeeeccchHHHhhccCCC---CccceeeeehhhHHHHHHHHhcchH-HHHhcCc---hhhcCcHHHh
Confidence 11111 1244567888999987 444332 35555555544443233 3343322 2222222 1224555433
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccc-ccccCCC--CCC--cchHHHHHHHHHHHHHH
Q 010659 167 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQV--PVKSTIVTGIVAAALAF 241 (505)
Q Consensus 167 ~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~-~~kv~~r--~~t--P~~Ail~~~vl~~il~~ 241 (505)
..+|..+-+.+.+.++..-+.-+.+.+.-.+....-+-|.+|+. ..+.+++ .+. |...-++...+..+...
T Consensus 281 ----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~ 356 (622)
T PRK10745 281 ----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVS 356 (622)
T ss_pred ----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEE
Confidence 33444433322222222222222222333444455678999942 2223322 233 33322222222222233
Q ss_pred HhcHHHHHHHHHHHHHHHHHHH
Q 010659 242 FMDVSALAGMVSVGTLLAFTMV 263 (505)
Q Consensus 242 ~~~~~~l~~l~s~~~li~y~~v 263 (505)
+.+-+.+.+...++.....+++
T Consensus 357 F~sS~~La~AYGiAVt~tM~iT 378 (622)
T PRK10745 357 FEHSSNLAAAYGIAVTGTMVLT 378 (622)
T ss_pred ecCchHHHHHhhhhheeHhHHH
Confidence 4466777777776654444433
No 76
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.37 E-value=13 Score=40.94 Aligned_cols=50 Identities=8% Similarity=-0.030 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF 74 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~ 74 (505)
...+-..++.+...+|+.|+|..+-........|++.++.+++.+++...
T Consensus 155 ~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~ 204 (554)
T KOG1286|consen 155 PGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIA 204 (554)
T ss_pred CCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeec
Confidence 35567778888999999999999999999999999999999999987654
No 77
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=93.02 E-value=13 Score=38.94 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=49.8
Q ss_pred hcCcCCchhHHHHHHHHHHHHHHHHHHHH-HHh--hcc----CCc----CCCCCcHHHHHHHhchhHHHHHHHHHHHHHH
Q 010659 119 VKNPQRDLPLGIGTALSICCALYMLVSIV-IVG--LVP----YYE----MDPDTPISSAFASHGMHWASYVITIGAVTAL 187 (505)
Q Consensus 119 ~knP~k~iPrai~~si~i~~vlYil~~~~-l~~--~~p----~~~----l~~~~p~~~a~~~~g~~~~~~iv~~~~~~~~ 187 (505)
.|| +|+..|+...+.....+++.+..+. +.. ..| ..+ .+++..+.....+..+++..-++.++++.+.
T Consensus 229 ~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~ 307 (407)
T TIGR00813 229 AKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAV 307 (407)
T ss_pred cCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 444 4667788877766655555433221 111 122 111 1344555666666777888888888888888
Q ss_pred HHHHHHhhhHHHHHH
Q 010659 188 CSTLMGSILPQPRIL 202 (505)
Q Consensus 188 ~~~~~~~~~~~sR~l 202 (505)
.++..+.+.+.+-.+
T Consensus 308 mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 308 MSTLSSQLNSASTVF 322 (407)
T ss_pred HHhhhhhHHHHHHHH
Confidence 888877777666543
No 78
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=92.85 E-value=15 Score=39.03 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCc---CCCCCCCCch-hHHHHH-----
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY---ELPTGYFPFG-VNGMLA----- 97 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~---~~~~~~~p~g-~~gil~----- 97 (505)
..++++.++...+..-|+|..+++...+.-+.....++..+.-.. .+..+..+. --.+.|.+.. ..|+..
T Consensus 168 v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ 246 (425)
T TIGR00835 168 VTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQ 246 (425)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHH
Confidence 345555555555555599999998888776665554333221111 111111000 0001222221 112111
Q ss_pred ----HHHHHHHh---hhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCC---cCCCCCcHHHHH
Q 010659 98 ----GSATVFFA---FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYY---EMDPDTPISSAF 167 (505)
Q Consensus 98 ----g~~~~~fa---f~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~---~l~~~~p~~~a~ 167 (505)
|+.=..|+ =.|....++.+.|+++|.|.==.++.-..+=+.++..+..+.+...-.++ ..+..+-...+|
T Consensus 247 ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af 326 (425)
T TIGR00835 247 AIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQAL 326 (425)
T ss_pred HHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHH
Confidence 22222332 25677778888999999875444443333322333333333322222222 111111223567
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 010659 168 ASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 205 (505)
Q Consensus 168 ~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~am 205 (505)
+...++|+.+++.+..++-.+++.+++.+.+-+.+.-+
T Consensus 327 ~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 327 SYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77666788899999999999999999988887766554
No 79
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=92.66 E-value=17 Score=39.21 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHH-H--hhccCCcCCCCCcHHHHHHHhchhHHHHHHHHHH
Q 010659 107 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI-V--GLVPYYEMDPDTPISSAFASHGMHWASYVITIGA 183 (505)
Q Consensus 107 ~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l-~--~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~~ 183 (505)
.+.....+-.=..||+ |+..|+...+......++....+.- . ...|. ..+++..+.....+...++...++..++
T Consensus 251 ~~~p~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~ 328 (483)
T PRK09442 251 IGLPHTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAP 328 (483)
T ss_pred hCCCHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHH
Confidence 3443333333346663 4566777777665555554333221 1 12332 1234556666677777888888888888
Q ss_pred HHHHHHHHHHhhhHHHH
Q 010659 184 VTALCSTLMGSILPQPR 200 (505)
Q Consensus 184 ~~~~~~~~~~~~~~~sR 200 (505)
+.+..++..+.+.+.+-
T Consensus 329 ~aA~mST~~s~l~~~ss 345 (483)
T PRK09442 329 MAAIMSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777766554
No 80
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=92.25 E-value=18 Score=38.42 Aligned_cols=182 Identities=15% Similarity=0.197 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH----HHHHHHHHhhc-------ccccCCCCcCCCCCCCCch-h
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLA----MLFVIIAGSYL-------GFKTGWSGYELPTGYFPFG-V 92 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~----l~~~ii~~~~~-------~~~~~~~~~~~~~~~~p~g-~ 92 (505)
....++++.++...+..-|+|..+++.....=..-+. -+.+++.-+-. ...+.+......+++.... .
T Consensus 183 ~~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~ 262 (452)
T COG1115 183 PLVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVA 262 (452)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHH
Confidence 4556777777777788889998877776554332211 11111110000 0111111111111111100 0
Q ss_pred HHHHHHHHHHHHhh---hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC--CCC-cHHHH
Q 010659 93 NGMLAGSATVFFAF---IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDT-PISSA 166 (505)
Q Consensus 93 ~gil~g~~~~~faf---~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~--~~~-p~~~a 166 (505)
..+..|+.=..|+= .|....++.+.+++||.|.==..+....+=..++.....+.+...-.++..+ ... -...+
T Consensus 263 ~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A 342 (452)
T COG1115 263 QAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAA 342 (452)
T ss_pred HHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHH
Confidence 12233333334433 5667778888889999875433333333323333333333333222222222 222 23457
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 010659 167 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 206 (505)
Q Consensus 167 ~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amA 206 (505)
++...++++..++.+++++-.+++.+++.+.+-|.+.-+.
T Consensus 343 ~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 343 FSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999988887776544
No 81
>PRK11017 codB cytosine permease; Provisional
Probab=91.75 E-value=20 Score=37.86 Aligned_cols=101 Identities=18% Similarity=0.043 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHh-hhhhh
Q 010659 32 LVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA-FIGFD 110 (505)
Q Consensus 32 il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~fa-f~G~e 110 (505)
..++.+.....|.|...+++++......+.++...+..... .+++.+..+..+..+ .+++.++....-. ..+.-
T Consensus 127 ~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~---~~~~~a~~~~~g~~~~~~~ 201 (404)
T PRK11017 127 SGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVND--VGGLDGLKAIVPAEP---LDFSAALTLVVGSFISGGT 201 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhhhcCCCCCc---ccHHHHHHHHHHHHHHhHh
Confidence 34455666678999888998887776655544433322221 122222111111112 2334443333222 34455
Q ss_pred hHhhhhhhhcCcCCchhHHHHHHHHHHH
Q 010659 111 AVASTAEEVKNPQRDLPLGIGTALSICC 138 (505)
Q Consensus 111 ~i~~~aeE~knP~k~iPrai~~si~i~~ 138 (505)
..+..+...|++++.. .+...+..+..
T Consensus 202 ~~~DysRy~k~~~~~~-~~~~lg~~i~~ 228 (404)
T PRK11017 202 LTADFVRFGRSAKIAV-LATMVAFFLGN 228 (404)
T ss_pred cCCChHhhccCcccee-ehhHHHHHHHH
Confidence 6778888888765443 45555444433
No 82
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=91.40 E-value=13 Score=39.34 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhhhcCcC-CchhHHHHHHHHHHHHHHHHHHHHH
Q 010659 93 NGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPLGIGTALSICCALYMLVSIVI 148 (505)
Q Consensus 93 ~gil~g~~~~~faf~G~e~i~~~aeE~knP~-k~iPrai~~si~i~~vlYil~~~~l 148 (505)
.+++.++....++|.....+...-+|.|||. |++-+....+...+.++|......-
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~G 250 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFG 250 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688899999999999999999999999996 7888888999999988888776543
No 83
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=90.29 E-value=30 Score=37.50 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010659 158 DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRI 201 (505)
Q Consensus 158 ~~~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 201 (505)
+.+..+.........+|..-++..+++.+..++..+.+...+-.
T Consensus 309 ~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~ 352 (493)
T COG0591 309 NPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSA 352 (493)
T ss_pred CHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445666666777888887777777777777766666555443
No 84
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=88.92 E-value=33 Score=35.94 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhhh-hhhhH
Q 010659 34 LIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFI-GFDAV 112 (505)
Q Consensus 34 ~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf~-G~e~i 112 (505)
++.......|.|...+++.+...+..+..+...+......+ .....++++ +.+ +..+.....-... +.-..
T Consensus 121 ~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~--~~s---~~~~~~~~~~~~~swa~~~ 192 (386)
T TIGR02358 121 ILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD---LSELWNRAG--DMS---FAVAVELVIAMPLSWLPLI 192 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhhcCCCC--Ccc---HHHHHHHHHHHHHHHHHHc
Confidence 34566667899999999999887776666555444333222 111111111 112 2222222221111 22236
Q ss_pred hhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010659 113 ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGL 151 (505)
Q Consensus 113 ~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~ 151 (505)
++.+...|+|+| .-++...+..+...+-.+........
T Consensus 193 ~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a 230 (386)
T TIGR02358 193 ADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLA 230 (386)
T ss_pred cchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888887654 45666666665555555544444433
No 85
>PRK10484 putative transporter; Provisional
Probab=87.21 E-value=50 Score=36.08 Aligned_cols=82 Identities=13% Similarity=-0.064 Sum_probs=46.8
Q ss_pred hcCcCCchhHHHHHHHHHHHHHHHHHH---HHHHhhccCCcCCCCCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhh
Q 010659 119 VKNPQRDLPLGIGTALSICCALYMLVS---IVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSI 195 (505)
Q Consensus 119 ~knP~k~iPrai~~si~i~~vlYil~~---~~l~~~~p~~~l~~~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~ 195 (505)
+|| .|+..|+...+.....+.+.... +......|.+..++|..+.....+...++..-++..+++.+..++..+.+
T Consensus 270 ak~-~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l 348 (523)
T PRK10484 270 AKN-LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFL 348 (523)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455 35566776666544433333221 11122233222244556666666777777777777888888888877777
Q ss_pred hHHHHH
Q 010659 196 LPQPRI 201 (505)
Q Consensus 196 ~~~sR~ 201 (505)
.+.+-.
T Consensus 349 ~s~st~ 354 (523)
T PRK10484 349 NSASTL 354 (523)
T ss_pred HHHHHH
Confidence 766554
No 86
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=86.99 E-value=50 Score=35.86 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=30.6
Q ss_pred CCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010659 160 DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRI 201 (505)
Q Consensus 160 ~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 201 (505)
+..+.....+...++..-++..+++.+..++..+.+.+.+-.
T Consensus 311 d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 311 ERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSA 352 (502)
T ss_pred chHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555667788888888888888888888887777644
No 87
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=84.99 E-value=61 Score=35.00 Aligned_cols=122 Identities=19% Similarity=0.135 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCC--CCchhHHHHHHHHHHH
Q 010659 27 PCAAILVLIVTG-LLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY--FPFGVNGMLAGSATVF 103 (505)
Q Consensus 27 l~ai~il~l~~~-in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~--~p~g~~gil~g~~~~~ 103 (505)
+++..+.+.+.. +...|.+...|++.+...+..+..+.+.+-...+....+... +.+++. .+.-+..++.++....
T Consensus 172 ~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~-~~p~~~~~~~~~~w~~~~~~~~~v 250 (497)
T COG1953 172 LICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILG-ELPAGTVSGSNSSWAFLAGIAAWV 250 (497)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccc-cCCCCCCCcchhHHHHHHHHHHHH
Confidence 344445444444 345699999999999998888888777776665543322111 111110 0111222333332221
Q ss_pred -HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010659 104 -FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVG 150 (505)
Q Consensus 104 -faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~ 150 (505)
+-=+..-..+..+.+.|+|+ +.-++-+.++.+...+..+.....+.
T Consensus 251 ~~~Atl~lN~~DFsRfa~s~~-~~~~gq~~gLPv~~~l~~ligvv~ts 297 (497)
T COG1953 251 GFWATLALNIPDFTRFAKSQK-AQIWGQLVGLPVNFALFSLIGVVVTS 297 (497)
T ss_pred HHHHHHhcCCchhhcccCChh-hhhhccchhhhHHHHHHHHHHhhHHH
Confidence 11134455677888888754 44456666666666666655555443
No 88
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=84.59 E-value=9.2 Score=40.11 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCC
Q 010659 160 DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLL 211 (505)
Q Consensus 160 ~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~l 211 (505)
+..+.....+..+++..-++..+++.+..++..+.+.+.+-++ +||=.-
T Consensus 278 ~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~---~~Di~~ 326 (406)
T PF00474_consen 278 DLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAISSIF---SRDIYK 326 (406)
T ss_dssp GGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCC
T ss_pred cccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhhhhhh---hHHhhh
Confidence 3455666667777888888888888888888888887777643 667433
No 89
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=82.90 E-value=69 Score=33.99 Aligned_cols=40 Identities=10% Similarity=-0.100 Sum_probs=23.6
Q ss_pred CcHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 010659 161 TPISSAFASH---GMHWASYVITIGAVTALCSTLMGSILPQPR 200 (505)
Q Consensus 161 ~p~~~a~~~~---g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR 200 (505)
++..++++.. .++.+..++.++.+.+-.++....-++...
T Consensus 269 ~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~ 311 (416)
T COG1914 269 ADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQI 311 (416)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHH
Confidence 4555555443 356777777777766666666555544444
No 90
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=82.50 E-value=81 Score=34.54 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=36.4
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010659 18 IPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYL 72 (505)
Q Consensus 18 ~p~~~~~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~ 72 (505)
.|..+.++-.+++++++.+..+.-.|....+++- +=+.++-++.+...|+..
T Consensus 141 ~p~~~~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~F---GPVm~lWF~~l~~~Gl~~ 192 (627)
T COG3158 141 TPALDPYVVPITLIILVLLFLIQRFGTGRVGKLF---GPVMLLWFLALAVLGLIN 192 (627)
T ss_pred CccccCccHHHHHHHHHHHHHHhcccchhhhhhh---ccHHHHHHHHHHHHHHHH
Confidence 4677788989999999999999999988777654 333334444444555543
No 91
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=81.87 E-value=81 Score=34.07 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010659 159 PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRI 201 (505)
Q Consensus 159 ~~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 201 (505)
.+..+.........++..-++..+++.+..++..+.+.+.+-.
T Consensus 303 ~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~ 345 (487)
T TIGR02121 303 RETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSA 345 (487)
T ss_pred cchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556667788777888888888888888877777654
No 92
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=79.43 E-value=1e+02 Score=33.86 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=38.9
Q ss_pred hcCcCCchhHHHHHHHHHHHHHHHHHHHH-H--HhhccCC-cC-C--------CCCcHHHHHHHhchhHHHHHHHHHHHH
Q 010659 119 VKNPQRDLPLGIGTALSICCALYMLVSIV-I--VGLVPYY-EM-D--------PDTPISSAFASHGMHWASYVITIGAVT 185 (505)
Q Consensus 119 ~knP~k~iPrai~~si~i~~vlYil~~~~-l--~~~~p~~-~l-~--------~~~p~~~a~~~~g~~~~~~iv~~~~~~ 185 (505)
.|| .|+..|+..++......+|+...+. + ....+.+ +. + .+..........++.+..-++..+++.
T Consensus 287 aks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~A 365 (549)
T TIGR02711 287 VSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFA 365 (549)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHH
Confidence 444 4567777777766666666443322 1 1122211 11 1 011122233344556655566666666
Q ss_pred HHHHHHHHhhhHHH
Q 010659 186 ALCSTLMGSILPQP 199 (505)
Q Consensus 186 ~~~~~~~~~~~~~s 199 (505)
+..++..+.+.+.+
T Consensus 366 A~mST~~s~l~a~s 379 (549)
T TIGR02711 366 TILAVVAGLTLAGA 379 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555554
No 93
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=79.10 E-value=1e+02 Score=33.48 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHH--HHHHHHHHHHHHhcHHHH---HHH
Q 010659 177 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAALAFFMDVSAL---AGM 251 (505)
Q Consensus 177 ~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail--~~~vl~~il~~~~~~~~l---~~l 251 (505)
.++....++..+....++..+.+..+-.++.+| +.+| ..+.+..+ ..++++.++...+.++.+ ..+
T Consensus 392 ~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii 462 (485)
T PF02028_consen 392 KILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGALAIVLLLIGGLDALQSASII 462 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455555566666667777788888888888877 1121 12222232 234444445555555554 444
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 010659 252 VSVGTLLAFTMVAISVLILRY 272 (505)
Q Consensus 252 ~s~~~li~y~~v~~a~i~lR~ 272 (505)
.++-..+..++.+.+.++.-|
T Consensus 463 ~~lP~~~v~~~~~~~~~k~l~ 483 (485)
T PF02028_consen 463 GGLPFSFVMLLMCISFIKALK 483 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555555666666665544
No 94
>PRK12488 acetate permease; Provisional
Probab=77.22 E-value=1.2e+02 Score=33.37 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=16.1
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHH
Q 010659 40 LCVGIKESTIAQAIVTTANVLAMLFV 65 (505)
Q Consensus 40 n~~Gvk~~~~~~~i~~i~~i~~l~~~ 65 (505)
..-|.|...+.+.+=.++.++..++.
T Consensus 196 ~~GGm~av~~td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 196 TFGGMLATTWVQIIKAVLLLSGTSFM 221 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34578887777766666655554443
No 95
>PTZ00206 amino acid transporter; Provisional
Probab=72.07 E-value=68 Score=34.52 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=44.2
Q ss_pred CCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCccccc
Q 010659 160 DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFS 216 (505)
Q Consensus 160 ~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~ 216 (505)
...+.+..+...++++.+++.+..++..+++..+.+...+..+...-++...|+++.
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 346777777777899999999999999999999999888888776655444455543
No 96
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=71.28 E-value=1.3 Score=43.45 Aligned_cols=28 Identities=18% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHhcCChhHHHHHHHHH--HHHHHHHHhh
Q 010659 431 YLLINLGSATWARVSVWL--IIGVLVYVFY 458 (505)
Q Consensus 431 ~l~~~l~~~t~~~~~vw~--~iG~~iY~~y 458 (505)
.++.++.|.|.+.=.-|+ .++++|+.+|
T Consensus 156 Av~L~qaWfT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 156 AVLLHQAWFTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666675 4556666544
No 97
>PRK00701 manganese transport protein MntH; Reviewed
Probab=70.79 E-value=1.5e+02 Score=31.62 Aligned_cols=36 Identities=11% Similarity=-0.079 Sum_probs=25.5
Q ss_pred CcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhh
Q 010659 161 TPISSAFASHGMHWASYVITIGAVTALCSTLMGSIL 196 (505)
Q Consensus 161 ~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~ 196 (505)
+....+++...++++.+++.++.+.+-+++..+..+
T Consensus 294 ~~~a~~L~p~~G~~a~~lFaiGL~aag~sS~i~~~~ 329 (439)
T PRK00701 294 EDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTL 329 (439)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHHHhHHHH
Confidence 345566777778899999999988776666555433
No 98
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=69.14 E-value=92 Score=33.99 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=52.4
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCCCCcCCCCCCCCch-hHHHHHHHHHHHHhh-hhhhhHhhhh
Q 010659 40 LCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF-KTGWSGYELPTGYFPFG-VNGMLAGSATVFFAF-IGFDAVASTA 116 (505)
Q Consensus 40 n~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~-~~~~~~~~~~~~~~p~g-~~gil~g~~~~~faf-~G~e~i~~~a 116 (505)
...|+|..+|+......+-.+.++++.+-++.... ..+...+.. +++.... ..-+..++..++|+. .|+-...+++
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~-pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~ 273 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFT-PDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYG 273 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHS-B-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEec-CCcchhhHHHHHHHHHHHHhhccCCCcceEEEEc
Confidence 35788888888777665444444444444443211 111000000 1111111 223466778888887 6788888888
Q ss_pred hhhcCcCCchhHHHHHHHHHHHHHHHH
Q 010659 117 EEVKNPQRDLPLGIGTALSICCALYML 143 (505)
Q Consensus 117 eE~knP~k~iPrai~~si~i~~vlYil 143 (505)
.=.|+ +.|++|........-+...++
T Consensus 274 Sy~~~-~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 274 SYNKF-KNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp TTS-T-TS-SHHHHHHHHHHHHHHHHT
T ss_pred CcCCC-CccccccceEEEcCchhhhHh
Confidence 76665 678888666555555444433
No 99
>PRK09950 putative transporter; Provisional
Probab=62.43 E-value=2.4e+02 Score=30.81 Aligned_cols=95 Identities=7% Similarity=0.017 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCC-CCcchHHHHHHHHHHHHHHHhc-HHHHHHHH
Q 010659 175 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTT-QVPVKSTIVTGIVAAALAFFMD-VSALAGMV 252 (505)
Q Consensus 175 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~-~tP~~Ail~~~vl~~il~~~~~-~~~l~~l~ 252 (505)
...++....++.++....++..+++-++-.++.+|.=++. ||+. ..=.+++. .++++..+...+. ++.+-++.
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~----~P~~~~ri~W~i~-~g~ia~~Ll~~gG~l~~lQ~~~ 474 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGD----DPDRGLRLFWCVV-ITLIPLSILFTGASLDTMKTTV 474 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCC----CCCcchhHHHHHH-HHHHHHHHHHhCCcHHHHHHHH
Confidence 3445555556666666777777888888888776643311 2210 11122222 3334444444444 55544444
Q ss_pred ---HHHHHHHHHHHHHHHHHhhccC
Q 010659 253 ---SVGTLLAFTMVAISVLILRYVP 274 (505)
Q Consensus 253 ---s~~~li~y~~v~~a~i~lR~~~ 274 (505)
++-..+..++.+.+.++.-+++
T Consensus 475 ii~alP~~~i~~l~~~s~~k~l~~d 499 (506)
T PRK09950 475 VLTALPFLVILLIKVYGFIRWLKQD 499 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444455555555444333
No 100
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=60.49 E-value=2.6e+02 Score=30.59 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCC
Q 010659 247 ALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPVP 281 (505)
Q Consensus 247 ~l~~l~s~~~li~y~~v~~a~i~lR~~~~~-~~p~~ 281 (505)
.+..+..+-.+++.=++.++.+.-+|+.+. +.|.|
T Consensus 368 t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~ 403 (521)
T PF02990_consen 368 TILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCR 403 (521)
T ss_pred HHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcC
Confidence 344444444444444555555555444333 44433
No 101
>PRK09395 actP acetate permease; Provisional
Probab=60.27 E-value=2.7e+02 Score=30.65 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=15.7
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHH
Q 010659 39 LLCVGIKESTIAQAIVTTANVLAMLFV 65 (505)
Q Consensus 39 in~~Gvk~~~~~~~i~~i~~i~~l~~~ 65 (505)
...-|.|...+.+.+=.++.++..+++
T Consensus 197 t~~GGm~av~~TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 197 VLFGGMLATTWVQIIKAVLLLSGATFM 223 (551)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344578877777666655555444333
No 102
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=53.83 E-value=2.8e+02 Score=31.16 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=38.2
Q ss_pred CCCCcchhHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010659 19 PGLGIIVDPCAAILVLIVTG-LLCVGIKESTIAQAIVTTANVLAMLFVIIAGSY 71 (505)
Q Consensus 19 p~~~~~~~l~ai~il~l~~~-in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~ 71 (505)
++...|.-..++.+.+++.. ....|+|.++|+..+...+-.++++++.+-|+.
T Consensus 209 ~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvT 262 (629)
T KOG3660|consen 209 FGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVT 262 (629)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHcc
Confidence 44455665666666665444 456899999999998888887777777777664
No 103
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=52.32 E-value=21 Score=31.78 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=39.4
Q ss_pred cccccchhhHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHhhccccccccCcccccCcc
Q 010659 414 MCPFVPLLPIACILINVYLLINL-GSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAH 475 (505)
Q Consensus 414 ~~P~~P~~P~~~i~~n~~l~~~l-~~~t~~~~~vw~~iG~~iY~~yg~~~s~~~~~~~~~~~~ 475 (505)
..-++.++|++.+++...|--.+ ..+.|..++..+..++.+++.-++.+....++.+|+.--
T Consensus 77 sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~~QpViL 139 (150)
T COG3086 77 SALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKRTEWQPVIL 139 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCeEE
Confidence 33466789999999988885444 344577777777666666654444333344566666543
No 104
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=50.78 E-value=3.8e+02 Score=29.48 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 010659 172 MHWASYVITIGAVTALCSTLMGSILPQPRI 201 (505)
Q Consensus 172 ~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 201 (505)
.++..-++..+++.+..++..+.+.+.+-+
T Consensus 364 p~~l~gl~~ag~~aA~mSt~~s~l~a~st~ 393 (552)
T TIGR03648 364 PYWVIGLVAAGGLAAALSTAAGLLLVISSA 393 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777666544
No 105
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=49.05 E-value=28 Score=36.93 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 010659 34 LIVTGLLCVGIKESTIAQAIVTTANVLAM 62 (505)
Q Consensus 34 ~l~~~in~~Gvk~~~~~~~i~~i~~i~~l 62 (505)
++.......|.|...+++.+...+..+..
T Consensus 146 ~i~~~~~~~g~~~l~~~~~~~~~~~~~~~ 174 (440)
T PF02133_consen 146 LIQTLFAIYGMKALRRLAVIAAPILLVVF 174 (440)
T ss_dssp HHHHHHHCTHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHhHHhhhhHHHHhhh
Confidence 34455567788888888877666544443
No 106
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=45.08 E-value=4.4e+02 Score=28.60 Aligned_cols=211 Identities=18% Similarity=0.151 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---------CCCc-----CCCCCCCCchhHHH
Q 010659 30 AILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTG---------WSGY-----ELPTGYFPFGVNGM 95 (505)
Q Consensus 30 i~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~---------~~~~-----~~~~~~~p~g~~gi 95 (505)
++.++......+-|+|...|.|.+=.++.+...++..+.-..+...+. -++. ..+++.....+..
T Consensus 160 ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~- 238 (529)
T COG4147 160 IGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPID- 238 (529)
T ss_pred hHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHH-
Confidence 333444555566789999998877666665555544444333221110 0001 0112222222332
Q ss_pred HHHHHHHHHhhhhhhhHhhh------hhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHH------hhccCC--------
Q 010659 96 LAGSATVFFAFIGFDAVAST------AEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV------GLVPYY-------- 155 (505)
Q Consensus 96 l~g~~~~~faf~G~e~i~~~------aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~------~~~p~~-------- 155 (505)
.++..+--+.|.-...|. ..++|+.| ++..++...+..+|+..-..-. +.-|..
T Consensus 239 --~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR----~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w 312 (529)
T COG4147 239 --FISLGFALMVGTAGLPHILMRFFTVPDAKEAR----KSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKW 312 (529)
T ss_pred --HHHHHHHHHHccCCCCeEEEEEEecCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcc
Confidence 333334444565555543 34455544 4556777777778876543321 111211
Q ss_pred ----cCCC-------CCcHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhcCCCcccccccC
Q 010659 156 ----EMDP-------DTPISSAFASHG-MHWASYVITIGAVTALCSTLMGSIL----PQPRILMAMARDGLLPPFFSDVN 219 (505)
Q Consensus 156 ----~l~~-------~~p~~~a~~~~g-~~~~~~iv~~~~~~~~~~~~~~~~~----~~sR~l~amArDg~lP~~~~kv~ 219 (505)
|.+. +.....+....+ ++|...+++.+.+...++..-+..+ +.+|=+|++--|+-.+ +..
T Consensus 313 ~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~as----e~~ 388 (529)
T COG4147 313 IKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGAT----EKK 388 (529)
T ss_pred cccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCC----ccc
Confidence 2111 112223344455 6887777777777666666544433 3456666655444332 211
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 010659 220 KTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVS 253 (505)
Q Consensus 220 ~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s 253 (505)
+-..-..++.+.++++..+....+- .+..++.
T Consensus 389 -~v~vaRi~~v~~~vva~~lgi~~~g-nVaflVa 420 (529)
T COG4147 389 -EVRVARIAVVILGVVAILLGILPPG-NVAFLVA 420 (529)
T ss_pred -eehhHHHHHHHHHHHHHHheecCCc-cHHHHHH
Confidence 1133334555555555555433322 3444443
No 107
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=41.95 E-value=5.1e+02 Score=28.45 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHH--
Q 010659 175 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDG-LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGM-- 251 (505)
Q Consensus 175 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg-~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l-- 251 (505)
...+..+..++....-..++..+++-++-.++..| .=|+.+-|+ .+ -++++++++.+.+.+.++.+-+.
T Consensus 403 l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~-------~W-~v~~~~ia~~lL~~ggl~aLqt~~i 474 (537)
T COG1292 403 LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRV-------FW-GVLIGLIAAVLLLIGGLEALQTAAI 474 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHH-------HH-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33444555555555556777888888888888766 333322221 11 23344555555555555554444
Q ss_pred -HHHHHHHHHHHHHHHHHHhhccCC
Q 010659 252 -VSVGTLLAFTMVAISVLILRYVPP 275 (505)
Q Consensus 252 -~s~~~li~y~~v~~a~i~lR~~~~ 275 (505)
..+-..+..++++.+.++--++++
T Consensus 475 i~alPF~~vll~~~~sl~k~l~~d~ 499 (537)
T COG1292 475 ITALPFSLVLLVMMFSLIKDLKQDY 499 (537)
T ss_pred HHHccHHHHHHHHHHHHHHHHHhhH
Confidence 344444555566667666555443
No 108
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=32.69 E-value=34 Score=26.28 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhccc
Q 010659 445 SVWLIIGVLVYVFYGRT 461 (505)
Q Consensus 445 ~vw~~iG~~iY~~yg~~ 461 (505)
++..++|+++|-.|-++
T Consensus 10 ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 10 ICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34457888888877653
No 109
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=30.27 E-value=2e+02 Score=31.86 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc-hhHHHHHHHHHHHH
Q 010659 26 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF-GVNGMLAGSATVFF 104 (505)
Q Consensus 26 ~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~-g~~gil~g~~~~~f 104 (505)
.++++++.+++......|+|.++|+..+.+.+-.+++.++.+-|......++.......+.+... ....+..++..+++
T Consensus 255 ~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiff 334 (629)
T KOG3659|consen 255 ALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFF 334 (629)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHh
Confidence 45555566666777788999999986666666554444444444422211111111111111111 12334556666666
Q ss_pred hh-hhhhhHhhhhhhhcCcCCchhHHHHHHHH
Q 010659 105 AF-IGFDAVASTAEEVKNPQRDLPLGIGTALS 135 (505)
Q Consensus 105 af-~G~e~i~~~aeE~knP~k~iPrai~~si~ 135 (505)
+. .|+-.....|.-.|--.+-..-|++.|++
T Consensus 335 slg~GfG~L~AfaSyn~F~NNc~rDAll~S~i 366 (629)
T KOG3659|consen 335 SLGPGFGVLIAFASYNKFHNNCYRDALLTSII 366 (629)
T ss_pred hcCccchhhhhhhhhcccccchhhhhHHHHHH
Confidence 54 67777777666444322333335555443
No 110
>PTZ00359 hypothetical protein; Provisional
Probab=29.02 E-value=2.8e+02 Score=29.23 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhccccc
Q 010659 446 VWLIIGVLVYVFYGRTHS 463 (505)
Q Consensus 446 vw~~iG~~iY~~yg~~~s 463 (505)
++-.+-++..+.||+|..
T Consensus 364 vYg~v~fv~~l~yGfk~g 381 (443)
T PTZ00359 364 VYGFVVFVLMLIFGFKGN 381 (443)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 344445555566787543
No 111
>PHA03049 IMV membrane protein; Provisional
Probab=27.55 E-value=54 Score=25.06 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhccc
Q 010659 445 SVWLIIGVLVYVFYGRT 461 (505)
Q Consensus 445 ~vw~~iG~~iY~~yg~~ 461 (505)
.+..++|+++|-.|-++
T Consensus 10 ICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34457888888777653
No 112
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=26.65 E-value=1.6e+02 Score=28.09 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=24.3
Q ss_pred hhhhcCcC-CchhHHHHHHHHHHHHHHHHHHH
Q 010659 116 AEEVKNPQ-RDLPLGIGTALSICCALYMLVSI 146 (505)
Q Consensus 116 aeE~knP~-k~iPrai~~si~i~~vlYil~~~ 146 (505)
-|-.+||| |.+||+++.+.+.+.++-+....
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 47788998 99999999998877766555443
No 113
>PRK09928 choline transport protein BetT; Provisional
Probab=26.02 E-value=1e+03 Score=27.10 Aligned_cols=92 Identities=11% Similarity=-0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHH--
Q 010659 176 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVS-- 253 (505)
Q Consensus 176 ~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s-- 253 (505)
..++....++..+....++..+++-++-.++..|.-|+. + .++...=.++++ .+++++++...+.++.+-+++.
T Consensus 408 ~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~--~-pp~~~RifW~v~-ig~la~~LL~~GGL~aLQt~sii~ 483 (679)
T PRK09928 408 FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS--D-APNWLRVFWSVA-IGLLTLGMLMTNGISALQNTTVIM 483 (679)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC--C-CCcceeeHHHHH-HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344444455555556677777788888888777643311 0 011111122332 3444444445555665544444
Q ss_pred -HHHHHHHHHHHHHHHHhh
Q 010659 254 -VGTLLAFTMVAISVLILR 271 (505)
Q Consensus 254 -~~~li~y~~v~~a~i~lR 271 (505)
+-..+..++.+.+.++.-
T Consensus 484 alPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 484 GLPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544
No 114
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=7.1e+02 Score=27.50 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccc
Q 010659 250 GMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVS 329 (505)
Q Consensus 250 ~l~s~~~li~y~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (505)
++.+-...+.++.-.++.+.+|--++| ++..+|--++||.+++..+.-- -.
T Consensus 268 SIiNSlvIVlfLSgiv~mI~lRtl~rD----------------iarYne~d~~~d~~Ee~GWKLV-------------hG 318 (628)
T KOG1278|consen 268 SIINSLVIVLFLSGIVAMIMLRTLYRD----------------IARYNELDLDDDAQEESGWKLV-------------HG 318 (628)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHh----------------HhhhccccchhhhhhhcceEEe-------------ec
Q ss_pred ccccccccccccccccccchhhhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHh--hcccccCcccccC
Q 010659 330 YPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIV--LTSINQDEARHNF 407 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~q~~~~~~~ 407 (505)
.-..++...-.-...-+.-+.+.....|..++....+.+..+.+...-..+......=+..+.+. +..--+.+..++.
T Consensus 319 DVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~ 398 (628)
T KOG1278|consen 319 DVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRN 398 (628)
T ss_pred ccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhh
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHhcCChhH------HHHHHHHHHHHHHH-----HHhhccccccccCcccccCccc
Q 010659 408 GHAGGFMCPFVPLLPIACILINVYLLINLGSAT------WARVSVWLIIGVLV-----YVFYGRTHSSLLDAVYVPAAHV 476 (505)
Q Consensus 408 ~~~~~f~~P~~P~~P~~~i~~n~~l~~~l~~~t------~~~~~vw~~iG~~i-----Y~~yg~~~s~~~~~~~~~~~~~ 476 (505)
.-.-++-+|+. +=.+..+.|.++..+-++.+ ......|..+.+.. |+++..++-+..-...|-..|.
T Consensus 399 ~~lta~l~PGi--vf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqI 476 (628)
T KOG1278|consen 399 AILTAFLFPGI--VFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQI 476 (628)
T ss_pred HHhhhhhcchH--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccC
Q ss_pred ccc
Q 010659 477 DEI 479 (505)
Q Consensus 477 ~~~ 479 (505)
.|.
T Consensus 477 P~q 479 (628)
T KOG1278|consen 477 PEQ 479 (628)
T ss_pred CCC
No 115
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=25.35 E-value=9.2e+02 Score=26.37 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHHHhh
Q 010659 27 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF 106 (505)
Q Consensus 27 l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~faf 106 (505)
+++++++.++..+.++ ..+-+.++...++++.++.+... . +++ ..-.|..|++.++.+
T Consensus 350 l~g~~~V~vfm~~~Yr---~~Gvia~ial~~n~~lil~vls~----l---gat-------LtLpgIAGiILtIGm----- 407 (506)
T COG0342 350 LIGLALVAVFMLLYYR---LAGVIAAIALGLNGVLILAVLSL----L---GAT-------LTLPGIAGIILTIGM----- 407 (506)
T ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHH----h---ccc-------ccchhhhHHHHhhhh-----
Confidence 3444444444444443 55666666666654443332211 1 222 122366777777654
Q ss_pred hhhhhHhhhhhhhcCcCC
Q 010659 107 IGFDAVASTAEEVKNPQR 124 (505)
Q Consensus 107 ~G~e~i~~~aeE~knP~k 124 (505)
+.|+-.-.-||+|+.-|
T Consensus 408 -aVDaNVlI~ERIrEElr 424 (506)
T COG0342 408 -AVDANVLIFERIREELR 424 (506)
T ss_pred -cccccEEeeHHHHHHHh
Confidence 56777777777776543
No 116
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=24.34 E-value=2.8e+02 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.805 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 010659 444 VSVWLIIGVLVYVFYGRTH 462 (505)
Q Consensus 444 ~~vw~~iG~~iY~~yg~~~ 462 (505)
+++-+.+|+++|=.||++-
T Consensus 54 ~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 54 LGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4556899999999999865
No 117
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=22.41 E-value=2e+02 Score=24.30 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=34.7
Q ss_pred ccccccchhhHHHHHHHHHHHhcCChhH---HHHHHHHHHHHHHHHH
Q 010659 413 FMCPFVPLLPIACILINVYLLINLGSAT---WARVSVWLIIGVLVYV 456 (505)
Q Consensus 413 f~~P~~P~~P~~~i~~n~~l~~~l~~~t---~~~~~vw~~iG~~iY~ 456 (505)
|-.=++|+.|.+++..-.....+.+.++ =+.|+.|.++...+|+
T Consensus 23 yiaGLvPLFPTFALIahyiVg~er~~~~lr~T~lFgi~siipy~~yL 69 (107)
T PF06942_consen 23 YIAGLVPLFPTFALIAHYIVGSERGMEALRTTALFGIWSIIPYAAYL 69 (107)
T ss_pred HHhhHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444689999999888888888887665 5678899988888875
No 118
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=22.09 E-value=1.8e+02 Score=26.74 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.8
Q ss_pred hhhhcCcC-CchhHHHHHHHHHHHHHHHHHHH
Q 010659 116 AEEVKNPQ-RDLPLGIGTALSICCALYMLVSI 146 (505)
Q Consensus 116 aeE~knP~-k~iPrai~~si~i~~vlYil~~~ 146 (505)
-|-.+||| |.+||+++.+.....+.-++..+
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 47789998 99999999988777666555444
No 119
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=21.98 E-value=2.4e+02 Score=20.94 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHH
Q 010659 97 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYML 143 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil 143 (505)
..+-.++|+|.|...-.+.-+|.++-+ |...+.+-++.+++++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFVA 46 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHHH
Confidence 345567899999998888877776432 44444444444443333
No 120
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.78 E-value=1.8e+02 Score=24.95 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=11.0
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q 010659 346 RTVAGWTIMFTCIGVFVLTY 365 (505)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~ 365 (505)
.+.+..+++++.+|.+++..
T Consensus 41 wK~I~la~~Lli~G~~li~~ 60 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIII 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655443
No 121
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=21.51 E-value=9.4e+02 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=17.2
Q ss_pred hhhcCcCCchhHH---HHHHHHHHHHHHHHHHHHHHhhccCCcC
Q 010659 117 EEVKNPQRDLPLG---IGTALSICCALYMLVSIVIVGLVPYYEM 157 (505)
Q Consensus 117 eE~knP~k~iPra---i~~si~i~~vlYil~~~~l~~~~p~~~l 157 (505)
+|..++.+++..- ++.+-.+...+-.++=.++....+-+++
T Consensus 240 ~~l~~~~~~v~i~~~~~~~~~viIg~LGAimDvaisIaSsi~El 283 (385)
T COG5438 240 DELTYLSKNVGINFSGLFLAGVIIGSLGAIMDVAISIASSINEL 283 (385)
T ss_pred HHHhcCCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555555553332 3333333444444433333333333444
No 122
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=21.23 E-value=1.2e+03 Score=26.08 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhhhhHhhhhhhhcCcC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010659 97 AGSATVFFAFIGFDAVASTAEEVKNPQ--RDLPLGIGTALSICCALYMLVSIVIVGL 151 (505)
Q Consensus 97 ~g~~~~~faf~G~e~i~~~aeE~knP~--k~iPrai~~si~i~~vlYil~~~~l~~~ 151 (505)
..+....+.+.+.+.+..+..|.|--. |.-||.+..+-++.+++-.+++..+...
T Consensus 435 a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l 491 (624)
T PF03169_consen 435 ANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRL 491 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677888888888888887543 5566766666666666655555554433
No 123
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.26 E-value=7.3e+02 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHhhc
Q 010659 421 LPIACILINVYLLINLG-SATWARVSVWLIIGVLVYVFYG 459 (505)
Q Consensus 421 ~P~~~i~~n~~l~~~l~-~~t~~~~~vw~~iG~~iY~~yg 459 (505)
+-..++++.+|-|...+ ...|.....|+.+|-+.|..+.
T Consensus 50 i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~Gglwy~~ls 89 (284)
T PF12805_consen 50 IGFATLLVAVYTMAGPSPGPEALEHALLFLAGGLWYLLLS 89 (284)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777665 2257777788999998886553
No 124
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=20.19 E-value=1.7e+02 Score=18.54 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhcc
Q 010659 437 GSATWARVSVWLIIGVLVYVFYGR 460 (505)
Q Consensus 437 ~~~t~~~~~vw~~iG~~iY~~yg~ 460 (505)
++..|+... ++.|+.+|+.|.-
T Consensus 2 ~~~~wls~a--~a~~Lf~YLv~AL 23 (29)
T PRK14740 2 TVLDWLSLA--LATGLFVYLLVAL 23 (29)
T ss_pred cHHHHHHHH--HHHHHHHHHHHHH
Confidence 455665544 5889999998864
Done!