Query 010659
Match_columns 505
No_of_seqs 281 out of 2380
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.1E-36 3.9E-41 321.0 32.6 299 25-465 125-434 (445)
2 3gia_A Uncharacterized protein 100.0 1.1E-34 3.8E-39 305.8 29.0 246 24-276 124-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 2.5E-33 8.4E-38 300.8 31.1 258 25-283 130-406 (511)
4 2jln_A MHP1; hydantoin, transp 97.7 0.0088 3E-07 63.4 25.7 167 30-205 147-329 (501)
5 2xq2_A Sodium/glucose cotransp 96.7 0.29 9.9E-06 52.8 24.4 99 102-202 259-377 (593)
6 3dh4_A Sodium/glucose cotransp 94.9 4.4 0.00015 42.8 23.3 48 159-210 306-353 (530)
7 2a65_A Leutaa, Na(+):neurotran 91.0 4.8 0.00016 42.4 15.9 109 30-140 173-289 (519)
8 4djk_A Probable glutamate/gamm 22.4 5.9E+02 0.02 25.4 23.0 28 123-150 227-254 (511)
9 2l2t_A Receptor tyrosine-prote 13.4 1.7E+02 0.0059 19.6 3.1 16 449-464 25-40 (44)
10 3l1l_A Arginine/agmatine antip 10.1 1.1E+03 0.038 22.7 21.2 54 414-467 380-433 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1.1e-36 Score=320.97 Aligned_cols=299 Identities=20% Similarity=0.273 Sum_probs=257.2
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCc---hhHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSAT 101 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~---g~~gil~g~~~ 101 (505)
..+++++++++++.+|++|+|..+++|.+++.++++.++++++.++...+.+++.+ ++.+. ++.+++.++..
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 199 (445)
T 3l1l_A 125 LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA-----AWNVSGLGTFGAIQSTLNV 199 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCC-----C-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhccc-----ccCccCCccHHHHHHHHHH
Confidence 45678888899999999999999999999999999999888888776554433321 12222 35678899999
Q ss_pred HHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcC-CCCCcHHHHHHHhchhHHHHHHH
Q 010659 102 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVIT 180 (505)
Q Consensus 102 ~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l-~~~~p~~~a~~~~g~~~~~~iv~ 180 (505)
.+|+|.|+|.+++++||+|||+|++||+++.+..+++++|++.+++.....|++++ +.++|+.+++++.+++++..++.
T Consensus 200 ~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~ 279 (445)
T 3l1l_A 200 TLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVS 279 (445)
T ss_dssp HHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876 45679999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHh-------cHHHHHHHHH
Q 010659 181 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVS 253 (505)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~-------~~~~l~~l~s 253 (505)
++.+++.+++.++.+++.+|++|+|||||.+|++|+|+|++ ++|++|++++++++.++.+.. .++.+.++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (445)
T 3l1l_A 280 FCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV 358 (445)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 999999999999887766442 3678999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccc
Q 010659 254 VGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLI 333 (505)
Q Consensus 254 ~~~li~y~~v~~a~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (505)
++.++.|.+.+++++++|+|+| +|
T Consensus 359 ~~~~~~y~~~~~~~~~~r~~~~--~~------------------------------------------------------ 382 (445)
T 3l1l_A 359 IFTLVPYLYTCAALLLLGHGHF--GK------------------------------------------------------ 382 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSS--GG------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCc--cc------------------------------------------------------
Confidence 9999999999999999998765 11
Q ss_pred ccccccccccccccchhhhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCcc
Q 010659 334 KQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGF 413 (505)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~f 413 (505)
T Consensus 383 -------------------------------------------------------------------------------- 382 (445)
T 3l1l_A 383 -------------------------------------------------------------------------------- 382 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhccccccc
Q 010659 414 MCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSL 465 (505)
Q Consensus 414 ~~P~~P~~P~~~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~yg~~~s~~ 465 (505)
|.|..|++|.++.+.+.+++...++.++....+|+++|+++|+.+.+|+++.
T Consensus 383 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 383 ARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp GCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 2245578999999999999999999999999999999999999887766543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.1e-34 Score=305.83 Aligned_cols=246 Identities=22% Similarity=0.319 Sum_probs=221.9
Q ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCCCCCCCCchhHHHHHHHHHHH
Q 010659 24 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVF 103 (505)
Q Consensus 24 ~~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~p~g~~gil~g~~~~~ 103 (505)
+..+++++++++++.+|++|+|..++++.+++.++++.++++++.++...+.+++.+ .+.+.|+.+++.++...+
T Consensus 124 ~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~ 198 (444)
T 3gia_A 124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP-----DLAPSAVSGMIFASAIFF 198 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSC-----CCSHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCC-----CCCCcchHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999999988887765544432 345678888999999999
Q ss_pred HhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCC--CCCcHHHHHHHhchhHHHHHHHH
Q 010659 104 FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITI 181 (505)
Q Consensus 104 faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~--~~~p~~~a~~~~g~~~~~~iv~~ 181 (505)
|+|.|+|.+++++||+|||+|++||+++.+..+++++|++.+++..+..|++++. .+.|+.++++...++++..++.+
T Consensus 199 ~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~ 278 (444)
T 3gia_A 199 LSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISI 278 (444)
T ss_dssp GGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887763 34578888888888888899999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010659 182 GAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFT 261 (505)
Q Consensus 182 ~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~il~~~~~~~~l~~l~s~~~li~y~ 261 (505)
+++++.+++.++.+++.+|++++|||||.+|++|+|+|+ ++|.+|++++++++.++.++.+++.+.++.+++.++.|.
T Consensus 279 ~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 356 (444)
T 3gia_A 279 GALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYL 356 (444)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984 569999999999999988889999999999999999999
Q ss_pred HHHHHHHHhhccCCC
Q 010659 262 MVAISVLILRYVPPD 276 (505)
Q Consensus 262 ~v~~a~i~lR~~~~~ 276 (505)
+++++++++|+++|+
T Consensus 357 ~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 357 FVILSHYILIDEVGG 371 (444)
T ss_dssp HHHHHHHHTHHHHCC
T ss_pred HHHHHHHHhhhcCCC
Confidence 999999999987654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2.5e-33 Score=300.77 Aligned_cols=258 Identities=20% Similarity=0.258 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccccCCCCc-CCCCCCCCch-hHHHHHHHHH
Q 010659 25 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGY-ELPTGYFPFG-VNGMLAGSAT 101 (505)
Q Consensus 25 ~~l~ai~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~-l~~~ii~~~~~~~~~~~~~~-~~~~~~~p~g-~~gil~g~~~ 101 (505)
..+++++++++++.+|++|+|..+++|++.+.++++. ++++++.++.....++.... .+.+++.|.. ..+.+.++..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVA 209 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHH
Confidence 5678888999999999999999999999998886544 55666666654322211100 0111222221 1233455677
Q ss_pred HHHhhhhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHH----Hhc--hhHH
Q 010659 102 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFA----SHG--MHWA 175 (505)
Q Consensus 102 ~~faf~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~----~~g--~~~~ 175 (505)
.+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++.++++...+|+++...+++..+.+. ..| .++.
T Consensus 210 ~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (511)
T 4djk_A 210 FILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWT 289 (511)
T ss_dssp HHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTH
T ss_pred HHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHH
Confidence 8999999999999999999999999999999999999999999999999999988866665544444 345 5788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCcccccccCCCCCCcchHHHHHHHHHHH-HHHHhc--------HH
Q 010659 176 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAA-LAFFMD--------VS 246 (505)
Q Consensus 176 ~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~lP~~~~kv~~r~~tP~~Ail~~~vl~~i-l~~~~~--------~~ 246 (505)
..++.++.+++.+++.++.+++.+|++++|||||.+|++|+|+|++ ++|++|+++++++..+ +..+.+ ++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~ 368 (511)
T 4djk_A 290 VRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKN-GVPVTLVISQLVITSIALIILTNTGGGNNMSFL 368 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCSS-SCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 8899999999999999999999999999999999999999999986 9999999998544333 333444 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCC
Q 010659 247 ALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPVPST 283 (505)
Q Consensus 247 ~l~~l~s~~~li~y~~v~~a~i~lR~~~~~-~~p~~~~ 283 (505)
.+.++.+++.++.|.+.+++++++|+|+|+ +||||.+
T Consensus 369 ~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~ 406 (511)
T 4djk_A 369 IALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIP 406 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecC
Confidence 899999999999999999999999988765 4555544
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.73 E-value=0.0088 Score=63.40 Aligned_cols=167 Identities=8% Similarity=-0.071 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcCC-CCCCCCchhHHHHHHHHHH-HHhhh
Q 010659 30 AILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-PTGYFPFGVNGMLAGSATV-FFAFI 107 (505)
Q Consensus 30 i~il~l~~~in~~Gvk~~~~~~~i~~i~~i~~l~~~ii~~~~~~~~~~~~~~~~-~~~~~p~g~~gil~g~~~~-~faf~ 107 (505)
+++.++...+.+.|.|...+++.+...+.++.++.+.+..+...+. .+.+... ++.. ...+++.++..+ -+...
T Consensus 147 ~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~-~~~~~~~~~~~~---~~~~f~~ai~~~~~~~~~ 222 (501)
T 2jln_A 147 VIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADV-SLGEVMSMGGEN---PGMPFSTAIMIFVGGWIA 222 (501)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CHHHHTTCCCSS---CCSCHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhhhccCCcc---chHHHHHHHHHHHHHHHH
Confidence 3344556677789999999999998888777776665554433221 0011111 1111 112244444332 22224
Q ss_pred hhhhHhhhhhhhcCcCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCcHHHHHHHhchh-HH
Q 010659 108 GFDAVASTAEEVKNPQRD-----------LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WA 175 (505)
Q Consensus 108 G~e~i~~~aeE~knP~k~-----------iPrai~~si~i~~vlYil~~~~l~~~~p~~~l~~~~p~~~a~~~~g~~-~~ 175 (505)
+.-..+.++.+.|++++. .-.+...+..+...+..+........ ....+|.....+...++ ++
T Consensus 223 ~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~ 297 (501)
T 2jln_A 223 VVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIP 297 (501)
T ss_dssp HHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHH
T ss_pred HHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHH
Confidence 445578888999887651 23333333333333322222222211 12234544333323222 22
Q ss_pred HHHHH-HHHHHHHHHHHH-HhhhHHHHHHHHH
Q 010659 176 SYVIT-IGAVTALCSTLM-GSILPQPRILMAM 205 (505)
Q Consensus 176 ~~iv~-~~~~~~~~~~~~-~~~~~~sR~l~am 205 (505)
..+.. +.++++..+.-. +.+++.+--+..+
T Consensus 298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 298 MAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 44555 555666655544 3566666555444
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.73 E-value=0.29 Score=52.77 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=55.9
Q ss_pred HHHhhhhhhh-HhhhhhhhcCcCCchhHHHHHHHHHHHHHHHHHH-HHHHh-hc-c---------------CCcC-CCCC
Q 010659 102 VFFAFIGFDA-VASTAEEVKNPQRDLPLGIGTALSICCALYMLVS-IVIVG-LV-P---------------YYEM-DPDT 161 (505)
Q Consensus 102 ~~faf~G~e~-i~~~aeE~knP~k~iPrai~~si~i~~vlYil~~-~~l~~-~~-p---------------~~~l-~~~~ 161 (505)
....|.|.+. ..+-.=+.||+ |+..|+...+.....++..+.. ..+.. .. . ..+. ++|.
T Consensus 259 ~~~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~ 337 (593)
T 2xq2_A 259 ANLYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADK 337 (593)
T ss_dssp HHHHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGG
T ss_pred HHHHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhh
Confidence 3445666653 45555677774 5677777776655443333211 11111 01 0 1112 2344
Q ss_pred cHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010659 162 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 202 (505)
Q Consensus 162 p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l 202 (505)
.++... +..+++..-++..+++.+..++..+.+.+.+-++
T Consensus 338 ~~p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 338 AYPWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 6677888888888888888888888777776543
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=94.90 E-value=4.4 Score=42.77 Aligned_cols=48 Identities=15% Similarity=0.013 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Q 010659 159 PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGL 210 (505)
Q Consensus 159 ~~~p~~~a~~~~g~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~amArDg~ 210 (505)
+|..+....+ ..+++..-++..+++.+..++..+.+.+.+-.+ ++|=.
T Consensus 306 ~d~~~p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Diy 353 (530)
T 3dh4_A 306 ADKAYPWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 353 (530)
T ss_dssp GGGHHHHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTC
T ss_pred cchHHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHHH
Confidence 3445555554 566777777778888888888888777777643 56644
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=91.02 E-value=4.8 Score=42.43 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHhhccc----c-cCCCCcCCCCCCCCch-hHHHHHHHHHH
Q 010659 30 AILVLIVTGLLCVGI-KESTIAQAIVTTANVLAMLFVIIAGSYLGF----K-TGWSGYELPTGYFPFG-VNGMLAGSATV 102 (505)
Q Consensus 30 i~il~l~~~in~~Gv-k~~~~~~~i~~i~~i~~l~~~ii~~~~~~~----~-~~~~~~~~~~~~~p~g-~~gil~g~~~~ 102 (505)
++..++...+...|+ |-.+|++.++...-.+.++++.+-++.... . .+...+- .+++.... ..-+..++..+
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~-~Pd~s~L~~~~vw~~A~gQ~ 251 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLW-TPDFEKLKDPGVWIAAVGQI 251 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHH-SCCTTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh-cCCHHHhCCHHHHHHHHHHH
Confidence 333444556667899 778999999887777777766666554432 1 1100000 11222221 23467788899
Q ss_pred HHhh-hhhhhHhhhhhhhcCcCCchhHHHHHHHHHHHHH
Q 010659 103 FFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCAL 140 (505)
Q Consensus 103 ~faf-~G~e~i~~~aeE~knP~k~iPrai~~si~i~~vl 140 (505)
||++ .|+-...+++.=.|+ +.|++|........-+..
T Consensus 252 FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~ 289 (519)
T 2a65_A 252 FFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKA 289 (519)
T ss_dssp HHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHH
Confidence 9998 688888888876664 678888666555544433
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=22.40 E-value=5.9e+02 Score=25.42 Aligned_cols=28 Identities=11% Similarity=-0.164 Sum_probs=15.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010659 123 QRDLPLGIGTALSICCALYMLVSIVIVG 150 (505)
Q Consensus 123 ~k~iPrai~~si~i~~vlYil~~~~l~~ 150 (505)
-||-.|.+-.++.....+-.+..+....
T Consensus 227 ~k~P~k~ip~ai~~~~~~~~~~y~~~~~ 254 (511)
T 4djk_A 227 MSNPGRDYPLAMLLLMVAAICLSSVGGL 254 (511)
T ss_dssp SSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666665555444444433
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.37 E-value=1.7e+02 Score=19.62 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=7.8
Q ss_pred HHHHHHHHhhcccccc
Q 010659 449 IIGVLVYVFYGRTHSS 464 (505)
Q Consensus 449 ~iG~~iY~~yg~~~s~ 464 (505)
++++.++++..+|+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4445555544544444
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.15 E-value=1.1e+03 Score=22.70 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=33.7
Q ss_pred cccccchhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhccccccccC
Q 010659 414 MCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLD 467 (505)
Q Consensus 414 ~~P~~P~~P~~~i~~n~~l~~~l~~~t~~~~~vw~~iG~~iY~~yg~~~s~~~~ 467 (505)
+-|-.|..|.++++..++...-+-...|.....-..+-++....|..++++.++
T Consensus 380 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 380 FGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp SGGGCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred cccccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445567888999999888888765555544433333333344577776665443
Done!