BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010660
         (505 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O74963|NCA2_SCHPO Nuclear control of ATPase protein 2 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=nca2 PE=3 SV=1
          Length = 573

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 26/308 (8%)

Query: 197 KPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQP 256
           +P  I R W       + ++  S WL         + +  WI     + V F+ + +++P
Sbjct: 279 RPSAIERNW-----PKIFVTLLSAWLSTQIITKNRTSIRLWIDYLYSTAVDFYTNWIQKP 333

Query: 257 LLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEM--- 313
           +L I D +          +++ + ++    SL RM++ F   T    +  +   QE+   
Sbjct: 334 ILGIFDTIRSNRADSQITLLQTKSLESDMESLQRMVIDFVSDTSPAGINLDLVKQEVQQG 393

Query: 314 -LEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAV 372
            L  V+  YE +L  PI+  V+G L R LLIQ+QK K+D+E A+  +D++L++ E+ FA 
Sbjct: 394 DLTYVLQAYEHDLKTPIRTAVSGNLVRTLLIQLQKTKVDVEVALSGIDRLLKSQELVFAT 453

Query: 373 LAALPAFILSFILLMLVRA-WFKQD--SRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVD 429
           +   P+ I  ++++  V+A  F  D  SRAE R R  +  R        +RI+       
Sbjct: 454 VGITPSLIFCYVIIRYVKANIFNNDTLSRAERRQRFRQSLR------AAERIL----VRS 503

Query: 430 QGLEKEAHCMFGLVLYSLD--RLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRV 487
           Q +       +GL+++ ++   ++    G +K+  E   L QD+ D+         +LR 
Sbjct: 504 QKMNSLDDMSYGLLVFQVNLMAIMSMDMGLSKDVAE--DLLQDLEDIQSSSYGVQAQLRA 561

Query: 488 TSRLERMY 495
             R+ R++
Sbjct: 562 VDRIYRLF 569


>sp|Q55GJ3|NCA2_DICDI Nuclear control of ATPase protein 2 OS=Dictyostelium discoideum
           GN=nca2 PE=3 SV=1
          Length = 923

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 121/231 (52%), Gaps = 21/231 (9%)

Query: 198 PRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPL 257
           P    R WV  + G+V + F   +     S       +    + +D+ + F+++H+E+PL
Sbjct: 573 PNVFIRNWVKLSVGSVIVFFGIKY-----SYDNFDSFKQSAFDIRDAFIRFYHEHLEEPL 627

Query: 258 LSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEI- 316
           L+I + +   + K+   + +   +Q + +SL RM++ ++       +    + Q + ++ 
Sbjct: 628 LNIWNVI--RYDKKSLQLADPASLQSSIDSLGRMVIDYNIDRNHLDINSTETRQHLFQLA 685

Query: 317 -------VMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEIN 369
                  +M  YE  +  P+QN++ G++ R +LIQ+QK K+D++ AM+ +D++L+ANE+N
Sbjct: 686 SRGDISSIMKSYESNIRSPLQNILFGDMIRLILIQIQKEKVDVDKAMVAIDKLLQANELN 745

Query: 370 FAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVA------RIQRRLII 414
           F +LAA+P+ I   +L+  ++  F    +     ++       +I R LI+
Sbjct: 746 FQLLAAIPSAIFLALLIWQIKKLFTNQKKTLPYSQLVIFQTLRKINRTLIL 796


>sp|Q12374|NCA2_YEAST Nuclear control of ATPase protein 2 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=NCA2 PE=1 SV=1
          Length = 616

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 150/324 (46%), Gaps = 38/324 (11%)

Query: 190 HMVAKHQKPRKITRYWVHYT-CGAVGLS-FCSIWLLRHSSLMGSSDLENWICEAKDSMVG 247
           H + +  KP  +TRYW     C   G S   S+W  R+        ++++I   K ++V 
Sbjct: 307 HPLRRFTKPSILTRYWPSILLCLLYGPSSVMSLWNSRYF-------IQDFI---KTNVVD 356

Query: 248 FFNDHVEQPLLSIRDELFETFRKRHKGVMEV---EEVQMTSNSLHRMLLAF----SEQTK 300
           F    +   L +   +++ T +      + V   E +    +SL RM+++F    S+ T 
Sbjct: 357 FAKGLILNWLWAPLKQVWSTVKHDEGSAISVTSQETLNSDMDSLTRMIVSFVVDNSDSTS 416

Query: 301 GQKLP--------ENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDI 352
              +         E+    E +EI    YE +L HPI+N+  G L R+LLIQ+QK K+D 
Sbjct: 417 NSPIDPILLSTKVEHGDLTEFMEI----YETQLHHPIKNIATGGLVRSLLIQLQKTKVDG 472

Query: 353 ETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRL 412
             A+  +D++L++ ++ F V+A  PA ++ +  ++ ++ + K  +      R  R Q  +
Sbjct: 473 SMALNGIDKMLKSQQLVFGVVALSPALVILYSSIVALKRFVKLGNVWSNEKRY-REQISI 531

Query: 413 IIVEVEKRIMQYQIYVDQGLE-KEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDI 471
            +  VE R++ Y     QG +  E H   GL++  +  L          + + ++ R D+
Sbjct: 532 SLNNVE-RVLNYS---KQGADADEEHLNQGLLVIEVSNLYKLGSFLIPRSRKKEWFR-DV 586

Query: 472 IDLAKPGLQTAYKLRVTSRLERMY 495
            +L    L +   + V +R+  +Y
Sbjct: 587 EELVDTNLDSGAHINVVNRIYHVY 610


>sp|Q753J1|NCA2_ASHGO Nuclear control of ATPase protein 2 OS=Ashbya gossypii (strain ATCC
           10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NCA2
           PE=3 SV=1
          Length = 569

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 24/201 (11%)

Query: 197 KPRKITRYW----VHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDH 252
           +P  I RYW    +    G  G++  +IW  R+       D+  +I   K ++  F  D 
Sbjct: 271 QPNWIVRYWPTILIALAGGPAGIA--AIWNARN-------DIAAFI---KHNLFEFARDL 318

Query: 253 VEQPLLSIRDELFETFR---KRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENAS 309
           V+  L+     ++ T          +M    +    NSL RML+ F ++ +     + + 
Sbjct: 319 VKNWLVEPLRNIWSTVHHDPTSSIAIMSQGTLDTEINSLQRMLIDFLKEHEYANTVDTSV 378

Query: 310 -----DQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILR 364
                +Q  L   M  YE +L  PI+NLV G+L R+LLIQ+QK K+D   A+  +D++L+
Sbjct: 379 LMKEIEQGNLTQFMEIYEAQLRKPIRNLVTGDLIRSLLIQIQKGKVDGSLAIHGIDKLLQ 438

Query: 365 ANEINFAVLAALPAFILSFIL 385
           + ++ F +++  PA ++ ++L
Sbjct: 439 SQQLVFGIVSISPALLILYVL 459


>sp|Q9CJK7|LPXB_PASMU Lipid-A-disaccharide synthase OS=Pasteurella multocida (strain
           Pm70) GN=lpxB PE=3 SV=1
          Length = 392

 Score = 37.0 bits (84), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 28  QKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISER-ITVLTTLRSSLA 86
           +KA++  FE  P  FI  T   + D +A   + Q  C+  ++  S+R + +L   R S  
Sbjct: 152 EKAFYDRFEV-PCRFIGHT---MADAIALKPNRQEACEYLNLDASQRYVAILVGSRGSEV 207

Query: 87  TFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIG 130
           TFLA+ +++  K  ++   D + L+P +     + F +++A + 
Sbjct: 208 TFLAEPFLQAAKLLKQQYPDIQFLVPLINAKRREQFEQIKAQVA 251


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,143,151
Number of Sequences: 539616
Number of extensions: 6932735
Number of successful extensions: 18342
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18332
Number of HSP's gapped (non-prelim): 11
length of query: 505
length of database: 191,569,459
effective HSP length: 122
effective length of query: 383
effective length of database: 125,736,307
effective search space: 48157005581
effective search space used: 48157005581
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)