Query 010660
Match_columns 505
No_of_seqs 134 out of 153
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08637 NCA2: ATP synthase re 100.0 7.2E-76 1.6E-80 592.6 24.2 261 230-495 19-290 (290)
2 PF13270 DUF4061: Domain of un 61.6 22 0.00047 31.0 5.6 54 72-129 32-85 (90)
3 KOG2546 Abl interactor ABI-1, 45.4 58 0.0013 35.9 6.8 68 275-348 15-85 (483)
4 PF05934 MCLC: Mid-1-related c 41.0 2.3E+02 0.0049 32.1 10.5 47 140-186 115-165 (549)
5 TIGR01043 ATP_syn_A_arch ATP s 35.4 1.6E+02 0.0034 33.8 8.5 69 120-199 354-424 (578)
6 PRK10755 sensor protein BasS/P 32.1 5.5E+02 0.012 26.0 14.4 70 250-332 82-155 (356)
7 PRK09467 envZ osmolarity senso 29.8 5.8E+02 0.013 26.4 11.3 70 250-332 174-247 (435)
8 COG5000 NtrY Signal transducti 29.6 49 0.0011 38.2 3.4 30 369-398 84-117 (712)
9 PF03818 MadM: Malonate/sodium 29.5 1.2E+02 0.0026 24.8 4.7 18 356-373 1-18 (60)
10 PRK09470 cpxA two-component se 25.2 7.9E+02 0.017 25.5 11.4 70 250-332 187-261 (461)
11 PRK15321 putative type III sec 23.8 3.9E+02 0.0084 24.1 7.2 83 264-354 22-107 (120)
12 PF07219 HemY_N: HemY protein 22.0 2.8E+02 0.0061 24.2 6.2 29 368-396 16-44 (108)
13 TIGR01386 cztS_silS_copS heavy 21.3 7.6E+02 0.016 25.5 10.2 72 248-332 183-259 (457)
14 smart00076 IFabd Interferon al 21.1 2.6E+02 0.0057 25.3 5.9 36 163-198 41-76 (117)
No 1
>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast). Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].
Probab=100.00 E-value=7.2e-76 Score=592.64 Aligned_cols=261 Identities=36% Similarity=0.542 Sum_probs=228.5
Q ss_pred CchhHHHHHH-HHHHHHHHHhHhhhHHhhHhhHHHHHHHhhhc---CCCccchHHHhhchhHHHHHHHHHHhhccCCCCC
Q 010660 230 GSSDLENWIC-EAKDSMVGFFNDHVEQPLLSIRDELFETFRKR---HKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLP 305 (505)
Q Consensus 230 ~~~~i~~wi~-~~~etv~~F~~nwV~~Pl~~Ir~el~~T~R~~---~~~ims~~sL~sd~~SLeRMv~dF~~D~~~~~~~ 305 (505)
++++|.+|++ ++++|++|||+|||++|+++|+ +|+||+ +.++||+++|++|++||+|||+||++|+++.+..
T Consensus 19 ~r~~i~~wi~~~~~~t~~~f~~nwV~~Pl~~I~----~tlr~d~~s~~~i~s~~sL~~d~~SLeRMv~dF~~d~~~~~~~ 94 (290)
T PF08637_consen 19 NRDEIDNWIQENAVETVRGFWKNWVWEPLKSIW----DTLRHDEKSEIAIMSKESLQSDMESLERMVVDFAKDNSPNMPA 94 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 6799999999 8999999999999999999964 566774 4579999999999999999999999999876542
Q ss_pred CC-----cChhhHHHHHHHHHHHhhhchhHHhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHhhhHHHH
Q 010660 306 EN-----ASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFI 380 (505)
Q Consensus 306 ~~-----~~e~~~lt~Vm~~YE~elk~Pikn~v~G~LvR~LLIQVQK~KVD~e~Am~gIDkLLkSqeL~F~~va~~Pa~l 380 (505)
+. ..++++||+||++||+||||||||+|+|+|+|+|||||||+|||++.||+|||||||||||||||||++|||+
T Consensus 95 ~~~~l~~~v~~Gdlt~Vm~~YE~el~~Pik~~v~G~LvR~LLIQvQK~KVD~~~Am~gID~LLkSneL~F~iva~~Pa~l 174 (290)
T PF08637_consen 95 DLEELRQQVREGDLTPVMKRYEKELKHPIKNIVRGDLVRALLIQVQKTKVDVEVAMSGIDKLLKSNELNFGIVAASPAFL 174 (290)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhHHHH
Confidence 11 1245789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccchhHHHHHHHH--HHHHHHHHHhhhhcccccCcchhhhccchhHHHHHHHHHHHhhccC
Q 010660 381 LSFILLMLVRAWFKQDSRAEGRGRVARIQRRL--IIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHA 458 (505)
Q Consensus 381 i~~~~~~~~~~~~~~~~~~~~rgr~~~~~rr~--lL~~IER~L~~~~~~~~~~~~~~~~~~~GLLL~el~~L~~~~~~~~ 458 (505)
++|+++++++++++.+++..++++..+.++++ +|++|||+|+....+.......++++++|+|+|++|+||+.+..+.
T Consensus 175 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ieRlL~~~~~~~~~~~~~~~~~~~GlLl~~~~~L~~~~~~~~ 254 (290)
T PF08637_consen 175 ISYGLYRWLRRLFKSRKGARRRRRQRRKQRRMRRSLRNIERLLNSSNNETPTQDGELSYKDHGLLLLELHRLRRSAERLL 254 (290)
T ss_pred HHHHHHHHHHHHHccCccccccchhhHHHHHHHHHHHHHHHHHhccccccccccccchHHhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999999888876666766566655 7899999998655422333455678999999999999999988643
Q ss_pred CchhHHhhHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 010660 459 KETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMY 495 (505)
Q Consensus 459 ~~~~Ew~~f~eDL~dL~~~~l~~~~KL~vv~Rm~~~Y 495 (505)
+..++.+|+|||+||++++.++++|++|++||||+|
T Consensus 255 -p~~~~~e~~eDl~dL~~~~~~~~~kl~vv~Rm~~~Y 290 (290)
T PF08637_consen 255 -PASERREWLEDLNDLADPRLGVSQKLRVVERMWRSY 290 (290)
T ss_pred -CHhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhC
Confidence 445566667999999999999999999999999999
No 2
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=61.64 E-value=22 Score=31.05 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhHHHHHHHHHhhhhHHhh
Q 010660 72 SERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASI 129 (505)
Q Consensus 72 ~~~~~~l~~~~~~la~~~~~v~~~~d~~~~~l~~~~~~sl~~~~~~~~~~~~~le~~~ 129 (505)
=+.++-.+.+|+.|| ..|.++|...+...+.++..-...-..++.|+++||..-
T Consensus 32 ~eqM~~IReqQE~La----rlHfeL~~~~~~~~e~~~~~~~~~~~nm~~L~~~Le~Ls 85 (90)
T PF13270_consen 32 MEQMTKIREQQEKLA----RLHFELDSEQEEFREDSESNKTQSDENMDKLFSNLEQLS 85 (90)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 467888899999986 568888888877766666777778889999999999753
No 3
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=45.42 E-value=58 Score=35.91 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=46.3
Q ss_pred ccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhhhc---hhHHhhhhhHHHHHHHHHHHH
Q 010660 275 VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMH---PIQNLVNGELARALLIQVQKL 348 (505)
Q Consensus 275 ims~~sL~sd~~SLeRMv~dF~~D~~~~~~~~~~~e~~~lt~Vm~~YE~elk~---Pikn~v~G~LvR~LLIQVQK~ 348 (505)
-+.+++|.+.-+-|+| |.|||+|+.-+.. .....++ ..+.|+.+=-. =..|.+.|+.+|+|-||-++.
T Consensus 15 p~gR~al~~s~~nL~r-VadycednYiQs~----~kk~ale-etk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L 85 (483)
T KOG2546|consen 15 PDGRKALRSSYDNLPR-VADYCEDNYIQSA----DKKAALE-ETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQL 85 (483)
T ss_pred cccHHHHHHHHHhhHh-hhhhhhhchhccc----cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558899999999999 8999999976421 1223333 34445443222 245778899999999997764
No 4
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=40.95 E-value=2.3e+02 Score=32.14 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=35.5
Q ss_pred cCCCCCCCcccccc--Cccccc--cCCCCcchhhHHHHHHHHHHhHHhHHH
Q 010660 140 SSIDGSHSFPVLFE--KLPEVN--QEGSQWTDCEIKDSINLIYQNLQKLDV 186 (505)
Q Consensus 140 ~~~d~~~~~~l~f~--~lp~i~--~~~s~~t~~~~~~~i~ll~~~l~~~~~ 186 (505)
..+|..|--.+++. +|-+|+ ..+.+|+-..+.|+++.|..|+..++.
T Consensus 115 ~~~~~~YDa~i~ls~q~l~Eiq~fl~~e~wk~gaLddALs~iLin~k~hd~ 165 (549)
T PF05934_consen 115 NKGDMHYDAEIILSRQTLLEIQKFLNGEDWKPGALDDALSDILINFKPHDY 165 (549)
T ss_pred cccccceeEEEEeeHHHHHHHHHhccCCCCccchHHHHHHHHhhcCCcchh
Confidence 34455565555554 788886 677789999999999999888888874
No 5
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=35.36 E-value=1.6e+02 Score=33.84 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=39.1
Q ss_pred HHhhhhHHhhccccccccCCcCC--CCCCCccccccCccccccCCCCcchhhHHHHHHHHHHhHHhHHHHHHHHHhhcCC
Q 010660 120 DLFSKLEASIGHLHATRQGDSSI--DGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQK 197 (505)
Q Consensus 120 ~~~~~le~~~~~~~~~~~~~~~~--d~~~~~~l~f~~lp~i~~~~s~~t~~~~~~~i~ll~~~l~~~~~~~~~~l~~~~~ 197 (505)
.+++.|-..+.+++.... +.+. .|| ..-+|-|.+++.+.+|. +.+....+.+...-|+. ++..+...
T Consensus 354 yl~SrLa~~yERAG~~~~-~~~~~r~GS------IT~i~aVs~~ggD~sdP-Vt~~t~~i~dg~i~Ldr---~LA~~ghy 422 (578)
T TIGR01043 354 YLASRLAEFYERAGRVKT-LGGEERVGS------VTVIGAVSPPGGDFSEP-VTQNTLRIVKVFWALDA---DLAQRRHF 422 (578)
T ss_pred cHHHHHHHHHHhhccccc-cCCCCCCcc------EeEEEEEECCCCCCCcc-HHHHHHHHhCcEEEeCH---HHHhcCCC
Confidence 566777666667665432 2222 466 55677788888887753 55555555555555554 33344444
Q ss_pred CC
Q 010660 198 PR 199 (505)
Q Consensus 198 Ps 199 (505)
|.
T Consensus 423 PA 424 (578)
T TIGR01043 423 PA 424 (578)
T ss_pred CC
Confidence 54
No 6
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=32.13 E-value=5.5e+02 Score=25.98 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=39.1
Q ss_pred HhhhHHhhHhhHHHHHHHhhhcCCC----ccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhh
Q 010660 250 NDHVEQPLLSIRDELFETFRKRHKG----VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKEL 325 (505)
Q Consensus 250 ~nwV~~Pl~~Ir~el~~T~R~~~~~----ims~~sL~sd~~SLeRMv~dF~~D~~~~~~~~~~~e~~~lt~Vm~~YE~el 325 (505)
..++..|+..+.+.+ +.+..++.. ..+.+.+..-.+++.+|+...-... +....+....-+|+
T Consensus 82 ~~~~~~pl~~l~~~~-~~~~~~~~~~~~~~~~~~E~~~l~~~~n~~~~~l~~~~------------~~~~~~~~~~sHel 148 (356)
T PRK10755 82 VRWITRPLAELQKEL-EARTADNLTPIAIHSSTLEIEAVTSALNQLVSRLTSTL------------DQERLFTADVAHEL 148 (356)
T ss_pred HHHHHhHHHHHHHHH-HhcCcccCCccCCCCChHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhHhh
Confidence 568899999876543 333222211 1234455555566666655543321 11223556677899
Q ss_pred hchhHHh
Q 010660 326 MHPIQNL 332 (505)
Q Consensus 326 k~Pikn~ 332 (505)
|+|+..+
T Consensus 149 rtPL~~i 155 (356)
T PRK10755 149 RTPLAGI 155 (356)
T ss_pred cChHHHH
Confidence 9998764
No 7
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=29.80 E-value=5.8e+02 Score=26.44 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=38.9
Q ss_pred HhhhHHhhHhhHHHHHHHhhhcCCC----ccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhh
Q 010660 250 NDHVEQPLLSIRDELFETFRKRHKG----VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKEL 325 (505)
Q Consensus 250 ~nwV~~Pl~~Ir~el~~T~R~~~~~----ims~~sL~sd~~SLeRMv~dF~~D~~~~~~~~~~~e~~~lt~Vm~~YE~el 325 (505)
..|+..|+..+.+.+ ..+..++.. .-.++++..=.+++.+|...-.+- .+.-..++..--+||
T Consensus 174 ~r~~~~pl~~l~~~~-~~~~~g~~~~~~~~~~~~Ei~~L~~~~n~m~~~l~~~------------~~~~~~~~~~lsHeL 240 (435)
T PRK09467 174 IRIQNRPLVALEHAA-LQVGKGEIPPPLREYGASEVRSVTRAFNQMAAGIKQL------------EDDRTLLMAGVSHDL 240 (435)
T ss_pred HHHHHhHHHHHHHHH-HHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhc
Confidence 457889999987654 444443321 223455555556666665443211 011223445556899
Q ss_pred hchhHHh
Q 010660 326 MHPIQNL 332 (505)
Q Consensus 326 k~Pikn~ 332 (505)
|+|+..+
T Consensus 241 rtPL~~i 247 (435)
T PRK09467 241 RTPLTRI 247 (435)
T ss_pred cchHHHH
Confidence 9998865
No 8
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=29.57 E-value=49 Score=38.17 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=23.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHH----HHhhcCcc
Q 010660 369 NFAVLAALPAFILSFILLMLVR----AWFKQDSR 398 (505)
Q Consensus 369 ~F~~va~~Pa~li~~~~~~~~~----~~~~~~~~ 398 (505)
.|++||++||+++..+..+.+. +||..+..
T Consensus 84 lFslvav~Pavivaifs~~~in~gld~WF~~kt~ 117 (712)
T COG5000 84 LFSLVAVIPAVIVAIFSAQFINLGLDRWFSKKTQ 117 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Confidence 5999999999999877666554 78875543
No 9
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=29.54 E-value=1.2e+02 Score=24.79 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 010660 356 MLELDQILRANEINFAVL 373 (505)
Q Consensus 356 m~gIDkLLkSqeL~F~~v 373 (505)
|+.|.+.+..|.|+++|.
T Consensus 1 me~i~~vl~~ngLitaFa 18 (60)
T PF03818_consen 1 MEMIEKVLTKNGLITAFA 18 (60)
T ss_pred ChHHHHHHhhCchHHHHH
Confidence 567889999999998765
No 10
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=25.22 E-value=7.9e+02 Score=25.54 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=36.8
Q ss_pred HhhhHHhhHhhHHHHHHHhhhcCCCc-----cchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHh
Q 010660 250 NDHVEQPLLSIRDELFETFRKRHKGV-----MEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKE 324 (505)
Q Consensus 250 ~nwV~~Pl~~Ir~el~~T~R~~~~~i-----ms~~sL~sd~~SLeRMv~dF~~D~~~~~~~~~~~e~~~lt~Vm~~YE~e 324 (505)
...+..|++.+.+.+ ..+..++... ..++++..=.+++.+|+.....-. +....+.+.--+|
T Consensus 187 ~~~i~~pl~~l~~~~-~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~------------~~~~~~~~~~she 253 (461)
T PRK09470 187 AWSLAKPARKLKNAA-DEVAQGNLRQHPELETGPQEFRQAGASFNQMVTALERMM------------TSQQRLLSDISHE 253 (461)
T ss_pred HHHHHHHHHHHHHHH-HHHhcCCCccccCCCCChHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhHh
Confidence 345668988876543 4455544221 124444444555555544322110 1122345566789
Q ss_pred hhchhHHh
Q 010660 325 LMHPIQNL 332 (505)
Q Consensus 325 lk~Pikn~ 332 (505)
+++|+.++
T Consensus 254 l~tpl~~i 261 (461)
T PRK09470 254 LRTPLTRL 261 (461)
T ss_pred hCCHHHHH
Confidence 99998874
No 11
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=23.80 E-value=3.9e+02 Score=24.11 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=52.0
Q ss_pred HHHHhhhcCCCccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcC-hhh--HHHHHHHHHHHhhhchhHHhhhhhHHHH
Q 010660 264 LFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENAS-DQE--MLEIVMSRYEKELMHPIQNLVNGELARA 340 (505)
Q Consensus 264 l~~T~R~~~~~ims~~sL~sd~~SLeRMv~dF~~D~~~~~~~~~~~-e~~--~lt~Vm~~YE~elk~Pikn~v~G~LvR~ 340 (505)
.+.+++.-. ...|.+.++ ++..|-+.+|..-+.|+. .-.+ +|+ ++..+++. .+--+|++-.+.|-||-.
T Consensus 22 F~Q~l~~LP-~la~S~~~K---D~I~q~m~~F~dp~~G~p--AF~s~~QQ~~mlq~~l~k--~~~~t~L~E~L~GVlV~~ 93 (120)
T PRK15321 22 FYQRLLALP-ESASSETLK---DSIYQEMNAFKDPNSGDS--AFVSFEQQTAMLQNMLAK--VEPGTHLYEALNGVLVGT 93 (120)
T ss_pred HHHHHHhCC-cccCcHHHH---HHHHHHHHHhCCCCCCCc--ccccHHHHHHHHHHHHHh--cCCCchHHHHHhhhHHhh
Confidence 344455422 355666565 888898889975444432 1122 333 34444443 444789999999999999
Q ss_pred HHHHHHHHhhhHHH
Q 010660 341 LLIQVQKLKLDIET 354 (505)
Q Consensus 341 LLIQVQK~KVD~e~ 354 (505)
+=.|-|-+|-=-++
T Consensus 94 ~N~Q~QM~sWMQe~ 107 (120)
T PRK15321 94 MNAQSQMTSWMQEI 107 (120)
T ss_pred ccHHHHHHHHHHHH
Confidence 99998887754333
No 12
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.05 E-value=2.8e+02 Score=24.18 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=21.9
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHhhcC
Q 010660 368 INFAVLAALPAFILSFILLMLVRAWFKQD 396 (505)
Q Consensus 368 L~F~~va~~Pa~li~~~~~~~~~~~~~~~ 396 (505)
+++.+++++=++++.+++++.++..++..
T Consensus 16 l~~~~~~l~~~~~~l~ll~~ll~~~~~~p 44 (108)
T PF07219_consen 16 LWVALILLLLLFVVLYLLLRLLRRLLSLP 44 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 56777888888888888888888766543
No 13
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=21.27 E-value=7.6e+02 Score=25.50 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=38.1
Q ss_pred HhHhhhHHhhHhhHHHHHHHhhhcCCC----ccc-hHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHH
Q 010660 248 FFNDHVEQPLLSIRDELFETFRKRHKG----VME-VEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYE 322 (505)
Q Consensus 248 F~~nwV~~Pl~~Ir~el~~T~R~~~~~----ims-~~sL~sd~~SLeRMv~dF~~D~~~~~~~~~~~e~~~lt~Vm~~YE 322 (505)
|+..++..|+..+.+. ...+..++.. ..+ .+++..=..++.+|......-. +.+....+.--
T Consensus 183 ~~~r~i~~pl~~l~~~-~~~ia~gdl~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~------------~~~~~~~~~~~ 249 (457)
T TIGR01386 183 WITRLGLEPLRRLSAV-AARISPESLDQRLDPSRAPAELRELAQSFNAMLGRLEDAF------------QRLSQFSADLA 249 (457)
T ss_pred HHHHHHhhHHHHHHHH-HHHhcccCccccCCCCCChHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhh
Confidence 3456788899887643 3444443322 122 3555555566666654432211 11222444456
Q ss_pred HhhhchhHHh
Q 010660 323 KELMHPIQNL 332 (505)
Q Consensus 323 ~elk~Pikn~ 332 (505)
+++|+|+.++
T Consensus 250 h~l~tpl~~~ 259 (457)
T TIGR01386 250 HELRTPLTNL 259 (457)
T ss_pred hhhcCcHHHH
Confidence 7888888764
No 14
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=21.15 E-value=2.6e+02 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=30.0
Q ss_pred CCcchhhHHHHHHHHHHhHHhHHHHHHHHHhhcCCC
Q 010660 163 SQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKP 198 (505)
Q Consensus 163 s~~t~~~~~~~i~ll~~~l~~~~~~~~~~l~~~~~P 198 (505)
..|.+..+.++++.|+..+..++.++.........|
T Consensus 41 a~W~~t~le~~l~~L~~Ql~~Le~Cl~~~~~~~~~~ 76 (117)
T smart00076 41 AAWNETLLESLLNELHQQLNHLEACLKQEMEEEDTP 76 (117)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 459999999999999999999999988776554444
Done!