Query 010660
Match_columns 505
No_of_seqs 134 out of 153
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 11:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010660.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010660hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldja2 a.118.17.1 (A:17-410) 21.3 1.7E+02 0.012 26.9 9.3 95 201-299 103-199 (394)
2 d1m1eb_ a.161.1.1 (B:) beta-ca 21.3 19 0.0014 27.1 1.7 51 70-135 7-57 (70)
3 d1au1a_ a.26.1.3 (A:) Interfer 10.7 3.8E+02 0.028 22.3 7.9 49 162-210 76-131 (166)
4 d1rh2a_ a.26.1.3 (A:) Interfer 10.1 3.2E+02 0.023 22.4 7.1 33 161-193 67-99 (154)
5 d2p06a1 a.204.1.3 (A:1-84) Hyp 9.4 57 0.0042 24.1 1.5 31 442-477 43-73 (84)
6 d1t98a2 a.47.6.1 (A:119-281) C 8.4 70 0.0051 27.1 1.9 44 246-290 31-76 (163)
7 d3besl1 a.26.1.3 (L:0-126) Int 7.5 1.2E+02 0.0085 24.9 2.9 35 469-503 91-126 (127)
8 d1ufza_ a.5.9.1 (A:) HBS1-like 6.8 1E+02 0.0075 23.5 2.0 38 317-359 34-72 (83)
9 d1joya_ a.30.2.1 (A:) EnvZ his 6.6 3.4E+02 0.025 18.5 4.9 18 316-333 14-31 (67)
10 d1sska_ b.148.1.1 (A:) Nucleoc 5.6 98 0.0071 26.3 1.4 15 27-41 83-97 (158)
No 1
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.29 E-value=1.7e+02 Score=26.91 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=51.8
Q ss_pred chhchhHHHhhhhhhhhhHHHHhhcccCcCchhHHHHHHHHHHHHHHHhHhhhHHhhH-hhHHHHHHHhhhcCCC-ccch
Q 010660 201 ITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLL-SIRDELFETFRKRHKG-VMEV 278 (505)
Q Consensus 201 l~RyW~~~~~~~~~~~~~s~~l~r~s~l~~~~~i~~wi~~~~etv~~F~~nwV~~Pl~-~Ir~el~~T~R~~~~~-ims~ 278 (505)
+.+.|-.+..++--+.-+..++=|+-....+.+=..-+.+..+.....|++.|..|+. .+.+.+++.|...+.| ..+.
T Consensus 103 ~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~~~l~~~il~~I~~~R~g~~i~~ 182 (394)
T d1ldja2 103 YTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINT 182 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 4588999887765554344444443211111111122334556677789999999974 3566667777664443 3443
Q ss_pred HHHhhchhHHHHHHHHHHhhc
Q 010660 279 EEVQMTSNSLHRMLLAFSEQT 299 (505)
Q Consensus 279 ~sL~sd~~SLeRMv~dF~~D~ 299 (505)
+- ..++-+|.++.+.+.
T Consensus 183 ~l----i~~~i~~l~~l~~~~ 199 (394)
T d1ldja2 183 RL----ISGVVQSYVELGLNE 199 (394)
T ss_dssp HH----HHHHHHHHHHTSCCS
T ss_pred HH----HHHHHHHHHHhCcch
Confidence 22 356667777766543
No 2
>d1m1eb_ a.161.1.1 (B:) beta-catenin-interacting protein ICAT {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.29 E-value=19 Score=27.08 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhHHHHHHHHHhhhhHHhhcccccc
Q 010660 70 HISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHAT 135 (505)
Q Consensus 70 ~i~~~~~~l~~~~~~la~~~~~v~~~~d~~~~~l~~~~~~sl~~~~~~~~~~~~~le~~~~~~~~~ 135 (505)
|+..||.+|+.|| |+||.|+.+-+.=|.+.--+++.-+|.+|......+.+
T Consensus 7 YtQQkveIL~aLr---------------KLGekLtp~ee~FL~~na~a~~~~lsqfekvs~d~Gs~ 57 (70)
T d1m1eb_ 7 YIQQKVRVLLMLR---------------KMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSIDQGAE 57 (70)
T ss_dssp HHHHHHHHHHHHH---------------HTTCCCCHHHHHHHHHTHHHHHHHHTC-----CCCCSC
T ss_pred HHHHHHHHHHHHH---------------HhcccCChhHHHHHHHhhHHHHHHHHhhhhhccccCCc
Confidence 4777888888775 79999986666667777777888899999765555544
No 3
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.68 E-value=3.8e+02 Score=22.25 Aligned_cols=49 Identities=16% Similarity=0.428 Sum_probs=35.7
Q ss_pred CCCcchhhHHHHHHHHHHhHHhHHHHHHHHHhhcCCCCc-------chhchhHHHh
Q 010660 162 GSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRK-------ITRYWVHYTC 210 (505)
Q Consensus 162 ~s~~t~~~~~~~i~ll~~~l~~~~~~~~~~l~~~~~Ps~-------l~RyW~~~~~ 210 (505)
+..|.+..+.++.+.++..+..++.++.........|.. +.+|--.+..
T Consensus 76 sa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~~ 131 (166)
T d1au1a_ 76 STGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILH 131 (166)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCTTTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCcccchHHHHHHHHHHHH
Confidence 445999999999999999999999998877755443322 4555555443
No 4
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.11 E-value=3.2e+02 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCCCcchhhHHHHHHHHHHhHHhHHHHHHHHHh
Q 010660 161 EGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVA 193 (505)
Q Consensus 161 ~~s~~t~~~~~~~i~ll~~~l~~~~~~~~~~l~ 193 (505)
.+..|.+..+.++++.++..+..++.++.....
T Consensus 67 ssa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~ 99 (154)
T d1rh2a_ 67 SSAAWDETLLDKFYTELYQQLNDLEACVIQGVG 99 (154)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345699999999999999999999998765543
No 5
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.43 E-value=57 Score=24.12 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhccCCchhHHhhHHHHHHHhcCC
Q 010660 442 LVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKP 477 (505)
Q Consensus 442 LLL~el~~L~~~~~~~~~~~~Ew~~f~eDL~dL~~~ 477 (505)
-|.-|++.||.++++ .+|..++..+.|.+|-
T Consensus 43 rlfeemdelreavek-----edwenlrdelldvanf 73 (84)
T d2p06a1 43 RLFEEMDELREAVEK-----EDWENLRDELLDVANF 73 (84)
T ss_dssp HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 355678899888775 5899988888887753
No 6
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.42 E-value=70 Score=27.12 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHhHhhhHHhhHhhHHHHHHHhhhcCCCccc--hHHHhhchhHHHH
Q 010660 246 VGFFNDHVEQPLLSIRDELFETFRKRHKGVME--VEEVQMTSNSLHR 290 (505)
Q Consensus 246 ~~F~~nwV~~Pl~~Ir~el~~T~R~~~~~ims--~~sL~sd~~SLeR 290 (505)
...|+..|.-|++==..|+|+.|.- .+.+|+ .++++.+.+.|=.
T Consensus 31 e~~Wr~~V~apLkySVaeifd~Idl-~QR~mDeQQ~~Vk~eIA~LL~ 76 (163)
T d1t98a2 31 EFHWHRNVYAPLKYSVAEIFDSIDL-TQRLMDEQQQQVKDDIAQLLN 76 (163)
T ss_dssp HHHHHHHTHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhheeHHHHHhhhhH-HHHhHHHHHHHHHHHHHHHHH
Confidence 4789999999998766677776654 345676 5778888777754
No 7
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.53 E-value=1.2e+02 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.6
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHHhhcccCCCCC
Q 010660 469 QDIIDLAKPGL-QTAYKLRVTSRLERMYDCLLPSLK 503 (505)
Q Consensus 469 eDL~dL~~~~l-~~~~KL~vv~Rm~~~Y~~L~p~~~ 503 (505)
+|+.+|.+..+ +...|.+.++-+..+|..|.|.++
T Consensus 91 ~df~~L~ki~vnD~~VQrKAi~EL~~V~~~Lsp~s~ 126 (127)
T d3besl1 91 DDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAK 126 (127)
T ss_dssp HHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCccC
Confidence 57888865433 578889999999999999999875
No 8
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.77 E-value=1e+02 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=28.7
Q ss_pred HHHHHHHhhhchhHHhhhhhHHHHHHHH-HHHHhhhHHHHHHHH
Q 010660 317 VMSRYEKELMHPIQNLVNGELARALLIQ-VQKLKLDIETAMLEL 359 (505)
Q Consensus 317 Vm~~YE~elk~Pikn~v~G~LvR~LLIQ-VQK~KVD~e~Am~gI 359 (505)
.+..-|+ +|++|.-++.+.-|+| |=|.|-|++.|++.|
T Consensus 34 L~SCldq-----mR~VvGDsvpe~~lv~avlk~dydvekALd~v 72 (83)
T d1ufza_ 34 LYSCLDH-----MREVLGDAVPDDILTEAILKHKFDVQKALSVV 72 (83)
T ss_dssp HHHHHHH-----HHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHcccCCHHHHHHHHHHccCCHHHHHHHH
Confidence 4444444 7788877788888887 568899999998654
No 9
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=6.62 E-value=3.4e+02 Score=18.49 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhchhHHhh
Q 010660 316 IVMSRYEKELMHPIQNLV 333 (505)
Q Consensus 316 ~Vm~~YE~elk~Pikn~v 333 (505)
.+...--+|||+|+..+-
T Consensus 14 ~f~~~vsHeLRTPLt~i~ 31 (67)
T d1joya_ 14 LLMAGVSHDLRTPLTRIR 31 (67)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 355556789999987653
No 10
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus, (SARS-CoV) [TaxId: 227859]}
Probab=5.64 E-value=98 Score=26.28 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.9
Q ss_pred ccceeeEeeecCchh
Q 010660 27 AQKAYFMMFERGPFA 41 (505)
Q Consensus 27 ~~~~~fm~~~rgp~a 41 (505)
..+|||....+||+|
T Consensus 83 ~p~WyFYY~GTGP~a 97 (158)
T d1sska_ 83 SPRWYFYYLGTGPEA 97 (158)
T ss_dssp CCEEEEEEESSSSCC
T ss_pred CCceEEEEecCCccc
Confidence 347999999999995
Done!