Query 010663
Match_columns 505
No_of_seqs 567 out of 4619
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.6E-56 1.6E-60 472.5 31.2 398 2-410 279-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-51 6.8E-56 436.8 28.3 391 1-399 232-721 (768)
3 4eco_A Uncharacterized protein 100.0 2.7E-48 9.2E-53 403.6 26.7 384 1-396 90-601 (636)
4 4eco_A Uncharacterized protein 100.0 5.2E-47 1.8E-51 393.9 24.4 357 2-374 193-602 (636)
5 3t6q_A CD180 antigen; protein- 100.0 3.8E-46 1.3E-50 387.6 29.3 394 1-398 42-563 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 4.7E-46 1.6E-50 392.9 28.4 382 1-394 332-839 (876)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-45 5.2E-50 383.1 30.0 389 1-399 41-562 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.1E-44 3.9E-49 376.5 35.3 357 7-373 26-463 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2E-45 6.7E-50 394.7 30.1 390 1-399 33-564 (844)
10 4ecn_A Leucine-rich repeat pro 100.0 8.9E-45 3E-49 383.2 24.5 356 2-376 435-844 (876)
11 2z63_A TOLL-like receptor 4, v 100.0 1.4E-43 4.9E-48 365.7 32.0 387 1-399 37-535 (570)
12 1ziw_A TOLL-like receptor 3; i 100.0 4.4E-42 1.5E-46 361.8 37.1 367 1-373 34-518 (680)
13 3vq2_A TLR4, TOLL-like recepto 100.0 7.9E-43 2.7E-47 362.6 30.8 368 1-377 65-563 (606)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-42 5.8E-47 365.0 33.4 382 16-399 222-626 (680)
15 2z7x_B TOLL-like receptor 1, v 100.0 3E-42 1E-46 351.5 27.7 377 1-399 9-485 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-42 4E-47 357.1 22.1 380 2-399 36-514 (549)
17 3v47_A TOLL-like receptor 5B a 100.0 6.5E-42 2.2E-46 343.2 25.9 357 16-378 30-414 (455)
18 2z63_A TOLL-like receptor 4, v 100.0 1.8E-41 6.2E-46 350.0 27.1 366 1-378 61-537 (570)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-41 8.2E-46 344.9 27.1 357 1-376 30-485 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-41 2.7E-45 343.8 28.6 362 16-399 31-514 (562)
21 3v47_A TOLL-like receptor 5B a 100.0 4.1E-41 1.4E-45 337.5 24.0 348 1-352 39-412 (455)
22 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-41 2.9E-45 358.8 27.1 374 14-394 22-538 (844)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-40 2.5E-44 336.7 26.9 355 2-377 41-515 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-38 4.4E-43 333.1 34.6 391 2-399 62-584 (635)
25 2z81_A CD282 antigen, TOLL-lik 100.0 6.5E-40 2.2E-44 336.7 23.3 375 7-393 19-484 (549)
26 2id5_A Lingo-1, leucine rich r 100.0 9.2E-40 3.1E-44 329.4 23.1 322 18-349 13-334 (477)
27 2id5_A Lingo-1, leucine rich r 100.0 5.1E-39 1.8E-43 323.9 26.1 348 43-399 13-360 (477)
28 1o6v_A Internalin A; bacterial 100.0 6.4E-38 2.2E-42 314.5 31.1 346 13-395 43-388 (466)
29 1o6v_A Internalin A; bacterial 100.0 5.3E-38 1.8E-42 315.1 28.4 330 8-374 61-390 (466)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-37 4.1E-42 310.0 28.6 336 4-378 30-393 (457)
31 1jl5_A Outer protein YOPM; leu 100.0 4.4E-37 1.5E-41 305.7 23.8 341 2-394 21-408 (454)
32 1ogq_A PGIP-2, polygalacturona 100.0 1E-36 3.4E-41 288.9 21.1 255 144-400 51-309 (313)
33 3o6n_A APL1; leucine-rich repe 100.0 4.5E-36 1.6E-40 294.3 26.0 335 39-399 43-378 (390)
34 4fmz_A Internalin; leucine ric 100.0 1.1E-35 3.8E-40 286.9 27.5 304 40-372 43-346 (347)
35 4fmz_A Internalin; leucine ric 100.0 1.6E-35 5.5E-40 285.8 26.9 308 11-348 39-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 1.3E-35 4.4E-40 291.0 26.4 312 14-350 43-354 (390)
37 3oja_B Anopheles plasmodium-re 100.0 7.5E-36 2.6E-40 308.4 25.8 335 39-398 49-383 (597)
38 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-35 1.1E-39 307.2 29.8 368 1-376 85-584 (635)
39 3oja_B Anopheles plasmodium-re 100.0 3.3E-35 1.1E-39 303.6 26.3 312 14-350 49-360 (597)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-34 5.9E-39 287.2 29.6 311 26-373 28-353 (457)
41 1jl5_A Outer protein YOPM; leu 100.0 5.2E-35 1.8E-39 290.8 24.5 334 13-395 8-370 (454)
42 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-35 1.4E-39 277.9 17.4 250 118-371 50-303 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-33 3.6E-38 271.1 25.0 288 17-346 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-33 4E-38 270.8 25.2 288 66-370 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 3.4E-33 1.2E-37 267.4 28.0 295 17-346 32-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 1.7E-32 5.9E-37 262.5 26.6 288 42-370 32-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-36 5.1E-41 304.8 -2.2 359 15-374 2-413 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-35 1.2E-39 294.9 1.1 368 2-373 13-441 (461)
49 2z66_A Variable lymphocyte rec 100.0 1.1E-30 3.9E-35 247.1 17.6 279 19-308 10-295 (306)
50 4fcg_A Uncharacterized protein 100.0 6.5E-30 2.2E-34 243.5 19.7 224 16-275 81-313 (328)
51 4fcg_A Uncharacterized protein 100.0 7.9E-30 2.7E-34 243.0 19.9 227 63-300 79-314 (328)
52 2z66_A Variable lymphocyte rec 100.0 5.9E-30 2E-34 242.2 18.3 276 68-377 10-292 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.8E-35 251.6 13.1 280 12-327 27-317 (353)
54 2z80_A TOLL-like receptor 2, v 100.0 2.8E-30 9.6E-35 249.5 14.3 283 63-376 29-318 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 1.7E-28 5.6E-33 245.1 24.3 249 121-375 57-306 (452)
56 1ozn_A Reticulon 4 receptor; N 100.0 4.7E-29 1.6E-33 233.4 18.8 224 19-276 14-238 (285)
57 1ozn_A Reticulon 4 receptor; N 100.0 4.1E-29 1.4E-33 233.9 18.1 227 121-375 14-241 (285)
58 3zyj_A Leucine-rich repeat-con 100.0 2.7E-28 9.3E-33 242.6 24.1 249 121-375 46-295 (440)
59 3zyj_A Leucine-rich repeat-con 100.0 3.1E-28 1E-32 242.3 24.1 247 18-276 45-292 (440)
60 3zyi_A Leucine-rich repeat-con 100.0 2.7E-28 9.4E-33 243.5 23.5 247 18-276 56-303 (452)
61 1wwl_A Monocyte differentiatio 100.0 2.7E-30 9.2E-35 244.9 7.5 248 115-373 40-310 (312)
62 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.7E-34 240.6 8.7 258 17-319 11-270 (317)
63 1wwl_A Monocyte differentiatio 100.0 8.3E-30 2.8E-34 241.5 6.5 249 85-349 39-310 (312)
64 3ogk_B Coronatine-insensitive 100.0 5.3E-31 1.8E-35 273.0 -3.0 378 12-393 108-524 (592)
65 3o53_A Protein LRIM1, AGAP0063 100.0 1.8E-29 6.2E-34 239.7 6.8 268 42-353 11-281 (317)
66 3ogk_B Coronatine-insensitive 100.0 8.2E-31 2.8E-35 271.5 -2.8 386 4-393 61-499 (592)
67 3g06_A SSPH2 (leucine-rich rep 100.0 1.2E-26 4.3E-31 237.3 25.0 265 17-356 41-305 (622)
68 3g06_A SSPH2 (leucine-rich rep 100.0 3.5E-26 1.2E-30 234.0 28.3 262 66-377 41-302 (622)
69 3oja_A Leucine-rich immune mol 99.9 6.6E-28 2.3E-32 242.0 10.3 215 144-372 35-250 (487)
70 3oja_A Leucine-rich immune mol 99.9 1.4E-27 4.7E-32 239.7 12.0 215 42-276 35-250 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 7.9E-26 2.7E-30 210.4 20.2 209 168-377 29-242 (276)
72 2p1m_B Transport inhibitor res 99.9 2.1E-28 7E-33 253.7 -0.8 184 187-372 285-494 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 205.4 20.4 208 143-351 28-240 (276)
74 2o6q_A Variable lymphocyte rec 99.9 2E-24 6.8E-29 200.1 22.3 205 169-376 18-222 (270)
75 2p1m_B Transport inhibitor res 99.9 8.9E-28 3E-32 248.9 -1.1 133 39-173 103-241 (594)
76 3rfs_A Internalin B, repeat mo 99.9 2.9E-25 1E-29 205.8 15.4 208 87-311 39-246 (272)
77 3rfs_A Internalin B, repeat mo 99.9 1.9E-25 6.4E-30 207.1 12.5 206 143-359 41-246 (272)
78 2o6q_A Variable lymphocyte rec 99.9 4.7E-24 1.6E-28 197.6 21.3 183 168-350 38-220 (270)
79 1p9a_G Platelet glycoprotein I 99.9 6.5E-24 2.2E-28 198.3 20.6 205 163-374 6-210 (290)
80 1p9a_G Platelet glycoprotein I 99.9 5E-24 1.7E-28 199.0 18.9 202 12-227 6-207 (290)
81 2ca6_A RAN GTPase-activating p 99.9 1.1E-25 3.9E-30 219.9 4.3 259 31-303 23-319 (386)
82 2ca6_A RAN GTPase-activating p 99.9 1.8E-25 6.3E-30 218.4 5.4 245 7-254 23-318 (386)
83 3goz_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 213.7 7.2 182 21-204 3-209 (362)
84 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.8E-28 199.2 16.1 228 118-372 64-307 (310)
85 4glp_A Monocyte differentiatio 99.9 1.7E-23 5.8E-28 197.9 16.9 199 191-394 91-306 (310)
86 2ast_B S-phase kinase-associat 99.9 8.5E-25 2.9E-29 209.7 7.2 196 43-249 49-257 (336)
87 2ast_B S-phase kinase-associat 99.9 4.4E-25 1.5E-29 211.7 5.0 199 65-273 47-257 (336)
88 3goz_A Leucine-rich repeat-con 99.9 3E-25 1E-29 214.8 3.4 251 123-374 3-299 (362)
89 2xwt_C Thyrotropin receptor; s 99.9 4.4E-23 1.5E-27 187.5 16.1 196 144-369 32-236 (239)
90 2xwt_C Thyrotropin receptor; s 99.9 6.4E-23 2.2E-27 186.4 15.2 197 118-345 31-236 (239)
91 1h6u_A Internalin H; cell adhe 99.9 1.7E-22 6E-27 190.5 17.4 192 40-253 40-231 (308)
92 3m19_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 182.2 18.8 180 168-374 15-194 (251)
93 3m19_A Variable lymphocyte rec 99.9 5.4E-22 1.8E-26 181.6 18.4 181 143-350 14-194 (251)
94 1h6u_A Internalin H; cell adhe 99.9 2.4E-22 8.3E-27 189.5 15.5 190 143-372 41-230 (308)
95 2o6s_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 170.4 15.4 159 168-333 29-187 (208)
96 4ay9_X Follicle-stimulating ho 99.9 1.1E-20 3.6E-25 181.8 17.7 240 121-369 12-256 (350)
97 2o6s_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 168.5 14.8 190 122-326 11-200 (208)
98 4ay9_X Follicle-stimulating ho 99.8 2.7E-20 9.2E-25 179.0 17.4 244 145-396 11-259 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.3E-20 7.9E-25 188.7 15.8 187 144-358 60-253 (571)
100 3cvr_A Invasion plasmid antige 99.8 5.2E-20 1.8E-24 186.1 17.6 183 167-377 59-248 (571)
101 1m9s_A Internalin B; cell inva 99.8 4.9E-20 1.7E-24 188.4 13.6 191 17-230 22-212 (605)
102 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.2E-24 184.8 17.0 177 12-209 39-215 (605)
103 1h6t_A Internalin B; cell adhe 99.8 9.2E-20 3.2E-24 170.3 13.8 187 20-229 28-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 4.8E-20 1.6E-24 164.7 11.3 155 219-376 15-170 (220)
105 1h6t_A Internalin B; cell adhe 99.8 2.5E-19 8.5E-24 167.3 14.8 188 44-253 27-214 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.9E-24 162.2 11.5 153 219-374 15-167 (220)
107 2xot_A Amphoterin-induced prot 99.8 5.8E-19 2E-23 170.4 13.5 176 170-372 21-202 (361)
108 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 155.6 15.5 155 218-376 22-176 (229)
109 2v9t_B SLIT homolog 2 protein 99.8 1.9E-18 6.4E-23 154.3 15.4 133 192-348 33-165 (220)
110 2xot_A Amphoterin-induced prot 99.8 8.7E-19 3E-23 169.1 14.0 157 144-300 40-202 (361)
111 1dce_A Protein (RAB geranylger 99.8 1E-21 3.4E-26 199.7 -7.4 120 145-269 443-566 (567)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-18 9E-23 153.3 15.5 88 188-275 54-141 (220)
113 3e6j_A Variable lymphocyte rec 99.8 8.3E-18 2.8E-22 151.2 16.3 136 215-351 40-175 (229)
114 1xeu_A Internalin C; cellular 99.8 8.9E-19 3E-23 160.9 9.1 169 14-228 17-185 (263)
115 4ezg_A Putative uncharacterize 99.8 8.2E-18 2.8E-22 147.6 14.6 128 143-276 44-172 (197)
116 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.1E-22 150.1 11.9 154 163-323 40-193 (197)
117 1dce_A Protein (RAB geranylger 99.8 6E-21 2.1E-25 194.0 -6.7 218 114-366 345-567 (567)
118 3sb4_A Hypothetical leucine ri 99.7 6E-18 2.1E-22 161.1 10.6 103 190-294 225-328 (329)
119 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.6E-22 151.6 13.9 152 11-182 36-187 (263)
120 4b8c_D Glucose-repressible alc 99.7 2.7E-18 9.1E-23 180.0 8.6 182 7-204 215-404 (727)
121 1w8a_A SLIT protein; signaling 99.7 8.7E-18 3E-22 146.6 10.4 113 264-376 30-143 (192)
122 3sb4_A Hypothetical leucine ri 99.7 5.4E-18 1.9E-22 161.5 8.7 102 262-365 225-327 (329)
123 4b8c_D Glucose-repressible alc 99.7 1.7E-18 5.8E-23 181.6 5.1 217 16-251 173-403 (727)
124 1w8a_A SLIT protein; signaling 99.7 9.5E-17 3.2E-21 140.0 12.0 132 218-352 11-143 (192)
125 4fs7_A Uncharacterized protein 99.7 1.9E-15 6.6E-20 147.5 21.8 316 31-369 61-376 (394)
126 4fdw_A Leucine rich hypothetic 99.7 3.7E-15 1.3E-19 144.8 21.3 266 14-299 111-382 (401)
127 4fdw_A Leucine rich hypothetic 99.7 6.8E-15 2.3E-19 143.0 21.9 265 41-348 113-383 (401)
128 2ell_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 133.7 10.4 87 238-324 70-160 (168)
129 2ell_A Acidic leucine-rich nuc 99.7 4.6E-16 1.6E-20 132.7 11.3 132 215-348 24-160 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 2.7E-16 9.3E-21 131.2 7.8 59 192-252 18-77 (149)
131 2je0_A Acidic leucine-rich nuc 99.6 6.9E-16 2.4E-20 128.7 9.4 85 167-253 17-102 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 9.9E-16 3.4E-20 133.4 10.0 112 263-375 31-142 (193)
133 2o6r_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 128.1 12.8 132 242-376 10-141 (177)
134 2wfh_A SLIT homolog 2 protein 99.6 8.4E-15 2.9E-19 127.5 13.3 107 168-275 32-138 (193)
135 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 3.9E-19 125.1 13.7 130 145-277 9-138 (177)
136 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.8E-18 135.0 22.2 310 11-344 66-375 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.6 2E-15 6.8E-20 129.7 7.9 135 11-155 14-152 (176)
138 1ds9_A Outer arm dynein; leuci 99.6 6.5E-17 2.2E-21 141.9 -4.0 132 60-204 43-185 (198)
139 1ds9_A Outer arm dynein; leuci 99.6 1.2E-16 4.2E-21 140.2 -2.4 150 12-173 14-180 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.2E-19 124.1 9.1 133 235-372 15-153 (176)
141 4gt6_A Cell surface protein; l 99.5 3.7E-12 1.3E-16 124.2 23.3 309 43-371 66-390 (394)
142 3g39_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 114.9 11.1 108 18-134 11-118 (170)
143 3g39_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 114.4 11.4 108 266-376 12-119 (170)
144 2r9u_A Variable lymphocyte rec 99.4 5.5E-13 1.9E-17 113.8 11.5 107 18-133 14-120 (174)
145 4gt6_A Cell surface protein; l 99.4 1.8E-11 6E-16 119.4 22.9 296 58-371 56-369 (394)
146 2r9u_A Variable lymphocyte rec 99.4 9.9E-13 3.4E-17 112.2 11.4 107 266-375 15-121 (174)
147 3un9_A NLR family member X1; l 99.3 1E-13 3.4E-18 133.4 -3.2 111 118-228 101-224 (372)
148 3un9_A NLR family member X1; l 99.3 1.5E-13 5.2E-18 132.2 -2.7 135 239-373 101-253 (372)
149 4h09_A Hypothetical leucine ri 99.3 1.3E-09 4.4E-14 105.6 23.8 301 39-359 44-356 (379)
150 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 115.4 10.7 106 19-133 11-118 (347)
151 2ifg_A High affinity nerve gro 99.2 7.2E-11 2.4E-15 113.1 11.1 103 243-348 12-116 (347)
152 4h09_A Hypothetical leucine ri 99.2 6.3E-09 2.1E-13 100.8 24.4 290 61-369 42-343 (379)
153 2ra8_A Uncharacterized protein 99.1 1.3E-10 4.3E-15 110.8 6.2 39 166-204 278-320 (362)
154 2ra8_A Uncharacterized protein 99.0 3.4E-10 1.2E-14 107.8 4.6 83 190-274 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.5E-13 86.0 2.9 116 39-156 34-164 (185)
156 3rw6_A Nuclear RNA export fact 98.5 6.2E-08 2.1E-12 87.4 4.2 118 5-125 129-258 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 3.8E-08 1.3E-12 84.5 1.5 88 285-372 63-164 (185)
158 3rw6_A Nuclear RNA export fact 98.4 5.9E-08 2E-12 87.5 2.4 85 46-135 148-237 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.8E-11 72.8 3.4 93 31-129 52-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 70.6 4.3 85 89-178 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00027 9.3E-09 60.1 3.0 115 39-155 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00016 5.3E-09 61.6 1.2 11 64-74 40-50 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0042 1.4E-07 49.2 6.8 56 315-372 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.006 2.1E-07 48.2 5.5 35 67-101 33-67 (130)
165 2qkw_B Protein kinase; three-h 94.9 0.0028 9.7E-08 59.1 -1.3 36 470-505 28-63 (321)
166 4aw2_A Serine/threonine-protei 94.0 0.012 4.3E-07 57.3 0.7 34 471-504 64-97 (437)
167 3omv_A RAF proto-oncogene seri 93.4 0.029 9.8E-07 51.7 2.1 19 486-504 41-59 (307)
168 4aoj_A High affinity nerve gro 93.1 0.03 1E-06 52.2 1.8 21 483-503 43-63 (329)
169 3p1a_A MYT1 kinase, membrane-a 93.0 0.0074 2.5E-07 56.0 -2.6 23 481-503 57-79 (311)
170 4ase_A Vascular endothelial gr 89.9 0.096 3.3E-06 49.3 1.4 21 482-502 65-85 (353)
171 3kul_A Ephrin type-A receptor 89.1 0.15 5.2E-06 47.3 2.1 33 471-503 30-71 (325)
172 2vd5_A DMPK protein; serine/th 88.7 0.11 3.8E-06 50.1 1.0 34 470-503 50-83 (412)
173 3v8s_A RHO-associated protein 88.4 0.12 4.1E-06 49.8 1.0 32 472-503 60-91 (410)
174 3dzo_A Rhoptry kinase domain; 88.2 0.13 4.3E-06 49.7 0.9 25 478-502 75-99 (413)
175 4g3f_A NF-kappa-beta-inducing 87.8 0.14 4.9E-06 47.6 1.0 22 481-502 58-79 (336)
176 4fih_A Serine/threonine-protei 86.9 0.23 7.8E-06 46.4 1.8 21 483-503 76-96 (346)
177 4b99_A Mitogen-activated prote 84.9 0.3 1E-05 46.7 1.7 21 482-502 55-75 (398)
178 4fie_A Serine/threonine-protei 84.8 0.32 1.1E-05 46.7 1.8 21 482-502 152-172 (423)
179 2qol_A Ephrin receptor; recept 83.8 0.37 1.3E-05 45.7 1.7 23 481-503 45-67 (373)
180 3v5w_A G-protein coupled recep 83.4 0.38 1.3E-05 49.1 1.6 23 481-503 189-211 (689)
181 3lb7_A RAF proto-oncogene seri 82.7 0.55 1.9E-05 43.0 2.4 22 482-503 37-58 (307)
182 3e7e_A HBUB1, BUB1A, mitotic c 82.0 0.34 1.2E-05 45.7 0.7 24 479-502 63-86 (365)
183 1qcf_A Haematopoetic cell kina 81.8 0.53 1.8E-05 45.9 2.0 25 480-504 187-211 (454)
184 2w4o_A Calcium/calmodulin-depe 81.8 0.55 1.9E-05 44.0 2.1 24 480-503 52-75 (349)
185 3l9p_A Anaplastic lymphoma kin 81.2 0.5 1.7E-05 44.6 1.5 23 481-503 71-93 (367)
186 4dc2_A Protein kinase C IOTA t 80.7 0.61 2.1E-05 44.6 1.9 23 481-503 52-74 (396)
187 3p86_A Serine/threonine-protei 80.7 0.59 2E-05 42.9 1.8 23 481-503 37-59 (309)
188 2zmd_A Dual specificity protei 80.3 0.59 2E-05 44.6 1.7 23 482-504 57-79 (390)
189 1mqb_A Ephrin type-A receptor 80.2 0.58 2E-05 43.4 1.6 21 483-503 46-66 (333)
190 2y7j_A Phosphorylase B kinase 80.1 0.89 3E-05 42.8 2.8 30 474-503 87-116 (365)
191 1zar_A RIO2 kinase; serine kin 80.0 0.83 2.9E-05 41.3 2.5 25 481-505 90-114 (282)
192 3c1x_A Hepatocyte growth facto 79.4 0.55 1.9E-05 44.5 1.1 18 485-502 93-110 (373)
193 2psq_A Fibroblast growth facto 79.3 0.65 2.2E-05 43.9 1.6 22 481-502 81-102 (370)
194 1u5q_A Serine/threonine protei 79.1 0.64 2.2E-05 43.5 1.5 22 481-502 54-75 (348)
195 1zth_A RIO1 serine protein kin 79.0 0.74 2.5E-05 41.0 1.8 17 486-502 52-68 (258)
196 1vzo_A Ribosomal protein S6 ki 78.6 0.71 2.4E-05 43.3 1.7 22 481-502 54-75 (355)
197 2i1m_A Macrophage colony-stimu 78.5 0.72 2.5E-05 42.7 1.7 23 480-502 45-67 (333)
198 2c30_A Serine/threonine-protei 78.4 0.7 2.4E-05 42.6 1.5 21 483-503 47-67 (321)
199 1fmk_A C-SRC, P60-SRC, tyrosin 78.3 0.81 2.8E-05 44.6 2.0 24 481-504 184-207 (452)
200 1luf_A Muscle-specific tyrosin 78.0 0.82 2.8E-05 42.4 1.9 26 478-503 44-69 (343)
201 2r5t_A Serine/threonine-protei 77.9 0.91 3.1E-05 43.0 2.2 23 481-503 38-60 (373)
202 4e7w_A Glycogen synthase kinas 77.9 0.65 2.2E-05 44.3 1.2 22 483-504 42-63 (394)
203 1j1b_A Glycogen synthase kinas 77.2 0.78 2.7E-05 44.2 1.5 21 483-503 56-76 (420)
204 2vx3_A Dual specificity tyrosi 77.1 0.78 2.7E-05 43.5 1.5 26 478-503 51-76 (382)
205 3i6u_A CDS1, serine/threonine- 77.0 1.2 4E-05 43.0 2.7 25 479-503 133-157 (419)
206 3an0_A Dual specificity mitoge 76.9 0.82 2.8E-05 42.4 1.5 23 480-502 50-72 (340)
207 3mdy_A Bone morphogenetic prot 76.0 0.81 2.8E-05 42.3 1.2 25 479-503 35-59 (337)
208 3cbl_A C-FES, proto-oncogene t 75.9 0.92 3.2E-05 42.9 1.6 23 481-503 114-136 (377)
209 3tt0_A Basic fibroblast growth 75.7 0.94 3.2E-05 43.0 1.6 22 481-502 69-90 (382)
210 1rjb_A FL cytokine receptor; k 75.7 0.95 3.3E-05 42.1 1.6 23 480-502 44-66 (344)
211 3nsz_A CK II alpha, casein kin 75.6 0.96 3.3E-05 41.7 1.6 22 481-502 36-57 (330)
212 2h8h_A Proto-oncogene tyrosine 74.9 1.1 3.8E-05 44.8 1.9 24 481-504 267-290 (535)
213 3a99_A Proto-oncogene serine/t 74.8 0.97 3.3E-05 41.6 1.4 22 481-502 43-64 (320)
214 3kvw_A DYRK2, dual specificity 74.5 1.1 3.6E-05 43.4 1.6 23 481-503 97-119 (429)
215 1rdq_E PKA C-alpha, CAMP-depen 74.3 1.1 3.8E-05 41.9 1.7 23 481-503 41-63 (350)
216 3c4z_A Rhodopsin kinase; Ser/T 73.9 1.3 4.3E-05 44.3 2.0 23 481-503 185-207 (543)
217 1k9a_A Carboxyl-terminal SRC k 73.8 1.2 4E-05 43.4 1.8 23 481-503 193-215 (450)
218 4exu_A Mitogen-activated prote 73.4 1.2 4E-05 42.1 1.6 22 481-502 42-63 (371)
219 4ejn_A RAC-alpha serine/threon 73.3 1.1 3.6E-05 43.7 1.3 23 480-502 147-169 (446)
220 3byv_A Rhoptry kinase; malaria 73.0 0.84 2.9E-05 43.2 0.5 24 480-503 72-95 (377)
221 3q60_A ROP5B; pseudokinase, tr 72.8 1.1 3.8E-05 42.2 1.3 23 481-503 62-84 (371)
222 2owb_A Serine/threonine-protei 72.8 1.1 3.7E-05 41.6 1.2 22 482-503 42-63 (335)
223 2v62_A Serine/threonine-protei 72.7 0.85 2.9E-05 42.5 0.4 22 482-503 38-59 (345)
224 2x4f_A Myosin light chain kina 72.4 1 3.6E-05 42.5 1.0 20 484-503 92-111 (373)
225 3uto_A Twitchin; kinase, muscl 72.2 1.2 4.1E-05 44.9 1.4 22 481-502 157-178 (573)
226 2acx_A G protein-coupled recep 71.6 1.3 4.4E-05 44.5 1.5 24 480-503 183-206 (576)
227 4gyi_A RIO2 kinase; protein ki 71.4 1.8 6.1E-05 41.0 2.3 20 486-505 100-119 (397)
228 3rp9_A Mitogen-activated prote 71.3 1.3 4.4E-05 43.2 1.4 22 481-502 53-74 (458)
229 2jii_A Serine/threonine-protei 71.2 1.1 3.8E-05 41.8 0.9 23 481-503 42-64 (352)
230 1kob_A Twitchin; kinase, intra 71.1 1.5 5E-05 41.7 1.7 23 481-503 51-73 (387)
231 4fl3_A Tyrosine-protein kinase 70.8 1.4 4.8E-05 45.1 1.6 16 487-502 375-390 (635)
232 1b6c_B TGF-B superfamily recep 70.5 2.1 7.2E-05 39.6 2.6 26 478-503 39-64 (342)
233 1wak_A Serine/threonine-protei 70.1 1.7 5.8E-05 41.2 1.9 22 481-502 37-58 (397)
234 1opk_A P150, C-ABL, proto-onco 70.1 1.1 3.9E-05 44.2 0.7 23 481-503 220-242 (495)
235 3pfq_A PKC-B, PKC-beta, protei 69.5 1.6 5.3E-05 45.1 1.6 24 480-503 340-363 (674)
236 3ttj_A Mitogen-activated prote 69.2 1.7 5.8E-05 42.5 1.7 22 481-502 62-83 (464)
237 3q5i_A Protein kinase; CDPK, m 69.1 1.8 6.3E-05 42.7 2.0 24 480-503 35-58 (504)
238 2j0j_A Focal adhesion kinase 1 68.0 2 6.7E-05 44.2 2.0 23 481-503 390-412 (656)
239 1nxk_A MAP kinase-activated pr 65.6 2.1 7.2E-05 40.9 1.5 17 487-503 68-84 (400)
240 3en9_A Glycoprotease, O-sialog 64.9 2.6 8.8E-05 42.1 2.1 19 485-503 340-358 (540)
241 3lij_A Calcium/calmodulin depe 64.9 2 6.8E-05 42.3 1.3 22 482-503 38-59 (494)
242 2w1i_A JAK2; chromosomal rearr 64.5 2.4 8.3E-05 38.9 1.7 20 483-502 43-62 (326)
243 2ozo_A Tyrosine-protein kinase 63.7 2.8 9.7E-05 42.6 2.1 16 488-503 343-358 (613)
244 2pzi_A Probable serine/threoni 57.0 3.3 0.00011 42.7 1.3 23 481-503 80-102 (681)
245 2lz0_A Uncharacterized protein 53.7 43 0.0015 24.3 6.6 38 161-199 14-51 (100)
246 2lz0_A Uncharacterized protein 52.5 49 0.0017 24.0 6.7 46 178-224 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-56 Score=472.45 Aligned_cols=398 Identities=33% Similarity=0.563 Sum_probs=326.3
Q ss_pred CccccccchhhhcC-CCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchh-hhCCCCCCEEEccCCcCCc
Q 010663 2 NNLVGMVSATIFNM-STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSS-ITNASKLTLLELGGNTFSG 79 (505)
Q Consensus 2 n~~~~~~~~~~~~l-~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~ 79 (505)
|+++|.+|..+.+. ++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|.. ++++++|++|++++|.+++
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 45555566555443 6666666666666655666555 5666666666666665555544 5666666666666666665
Q ss_pred cCcccccCCC-CCCEEeccCccccCC-CCCcccccccCC--CCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCc
Q 010663 80 LIPDTIGNLR-NLAWLGLAYNNLTSS-TSKLSFLSSLAN--CKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSI 155 (505)
Q Consensus 80 ~~~~~l~~l~-~L~~L~L~~n~l~~~-~~~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l 155 (505)
.+|..+.+++ +|++|++++|.+++. + ..+.. +++|++|++++|.+++.+|..+..+ ++|++|++++|.+
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~------~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPIL------PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL 430 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECC------TTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEE
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcC------hhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcc
Confidence 6666665555 666666666665543 2 22333 6788888888888888888888887 6899999999999
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccc
Q 010663 156 SGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCL 235 (505)
Q Consensus 156 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 235 (505)
++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.++
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 88889889999999999999999998889889999999999999999998889889999999999999999998899989
Q ss_pred cCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccccccccc--------------------------------
Q 010663 236 SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDI-------------------------------- 283 (505)
Q Consensus 236 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------------------------------- 283 (505)
+.+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 999999999999999998899999999999999999998887666533
Q ss_pred --------------------------------------ccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccc
Q 010663 284 --------------------------------------GNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEG 325 (505)
Q Consensus 284 --------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 325 (505)
..+++|+.|++++|+++|.+|..++.++.|+.|+|++|+++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 335678999999999999999999999999999999999999
Q ss_pred cCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCccCCCCCCCCCCC
Q 010663 326 QIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNELLCGLPNLQVQP 405 (505)
Q Consensus 326 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~ 405 (505)
.+|..++.+++|++|+|++|+++|.+|..+..+++|++|++++|+++|.+|..+.+..+...++.||+.+||.|. .+
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~ 747 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PR 747 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC---cC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999773 37
Q ss_pred CCCCC
Q 010663 406 CKVSK 410 (505)
Q Consensus 406 c~~~~ 410 (505)
|....
T Consensus 748 C~~~~ 752 (768)
T 3rgz_A 748 CDPSN 752 (768)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-51 Score=436.80 Aligned_cols=391 Identities=36% Similarity=0.569 Sum_probs=296.8
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCC-CCCCEEEccCCcCCc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNA-SKLTLLELGGNTFSG 79 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~ 79 (505)
+|+++|.+|.++.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+.+. ++|++|++++|.+++
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 37788888888888888888888888887766654 46677777777777766666666553 677777777777766
Q ss_pred cCcccccCCCCCCEEeccCccccCC-CCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc----------------
Q 010663 80 LIPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS---------------- 142 (505)
Q Consensus 80 ~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~---------------- 142 (505)
.+|..|+++++|++|++++|.+.+. |. ..+..+++|++|++++|.+.+.+|..+..+.
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 6666677777777777777666532 31 2255566666666666666555555555442
Q ss_pred ----------ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCC
Q 010663 143 ----------KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC 212 (505)
Q Consensus 143 ----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 212 (505)
++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3466666666666666777777778888888888888777787888888888888888888888888888
Q ss_pred CCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCee
Q 010663 213 HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGI 292 (505)
Q Consensus 213 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 292 (505)
.+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|++|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ecccccccccCCccc-----------------------------------------------------------------
Q 010663 293 NLSENNLSGDMPATI----------------------------------------------------------------- 307 (505)
Q Consensus 293 ~l~~n~~~~~~~~~~----------------------------------------------------------------- 307 (505)
++++|+++|.+|..+
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 888888877666543
Q ss_pred -----cCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCC-Ccc
Q 010663 308 -----GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG-GIF 381 (505)
Q Consensus 308 -----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~ 381 (505)
+.+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 23466788888888888888888888899999999999999889988888999999999999999888865 445
Q ss_pred CccCcccccCCccCCCCC
Q 010663 382 ANFTAESFMGNELLCGLP 399 (505)
Q Consensus 382 ~~~~~~~~~~n~~lc~~~ 399 (505)
..+..+++.+|+.....|
T Consensus 704 ~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCCSEEECCSSEEEEECC
T ss_pred CCCCEEECcCCcccccCC
Confidence 667777788877333244
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-48 Score=403.59 Aligned_cols=384 Identities=18% Similarity=0.241 Sum_probs=333.0
Q ss_pred CCccccccchhhhcCCCCcEEEcccc------------------------------------------------------
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINN------------------------------------------------------ 26 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n------------------------------------------------------ 26 (505)
+|+++|.+|++|+++++|++|+|++|
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 37899999999999999999999988
Q ss_pred ------------------------cccccCchhhhcCCCCCCEEeccCCccccc-----------------Cchhhh--C
Q 010663 27 ------------------------SLSGSLPSRIGLSLPTVEHLNLALNRFSGT-----------------IPSSIT--N 63 (505)
Q Consensus 27 ------------------------~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~ 63 (505)
.++| ||..++ ++++|++|+|++|.+++. +|..++ +
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~ 247 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence 3444 888888 799999999999999985 899988 9
Q ss_pred CCCCCEEEccCCcCCccCcccccCCCCCCEEeccCcc-ccC--CCCCcccccccCCCCCCCEEECcCCCCCccCch--HH
Q 010663 64 ASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN-LTS--STSKLSFLSSLANCKKLRSLNFIGNPLDGFLPS--SI 138 (505)
Q Consensus 64 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~--~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~ 138 (505)
+++|++|++++|.+.+.+|..++++++|++|++++|. +++ .|..+..+..+..+++|++|++++|.++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 9999999999999999999999999999999999998 886 3522211112234599999999999999 8888 88
Q ss_pred hhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCC-CCeEeccCccccccCCccCCCCC--
Q 010663 139 GNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQK-LQGLFLAFNKLVGSCPDELCHLD-- 215 (505)
Q Consensus 139 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~-- 215 (505)
..+ ++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 327 ~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 327 QKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp TTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred ccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 888 789999999999998999 8999999999999999998 78888999999 999999999998 7888777655
Q ss_pred CCCeEeccCcccccccCcccc-------CCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccc-ccc--
Q 010663 216 RLDKLVLLGNKFSGSIPSCLS-------NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFD-IGN-- 285 (505)
Q Consensus 216 ~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~-- 285 (505)
+|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+..+++|++|++++|.+. .+|.. +..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 899999999999998888888 7889999999999999655556667999999999999998 44443 332
Q ss_pred -----ccCCCeeecccccccccCCcccc--CCCCCcEEeCcCccccccCCccCcCCCCCCEEEC------cCCcCcccCC
Q 010663 286 -----LKVLLGINLSENNLSGDMPATIG--GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL------SNNKISGSIP 352 (505)
Q Consensus 286 -----~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~p 352 (505)
+++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 238999999999999 7888886 89999999999999997 8889999999999999 5688889999
Q ss_pred ccccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCccCC
Q 010663 353 KSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNELLC 396 (505)
Q Consensus 353 ~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc 396 (505)
..+..+++|+.|++++|++ +.+|.. ...++..+++.+|+..|
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 9999999999999999999 788875 34788888999998766
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-47 Score=393.90 Aligned_cols=357 Identities=22% Similarity=0.277 Sum_probs=320.8
Q ss_pred CccccccchhhhcCCCCcEEEccccccccc-----------------Cchhhh-cCCCCCCEEeccCCcccccCchhhhC
Q 010663 2 NNLVGMVSATIFNMSTLKIIILINNSLSGS-----------------LPSRIG-LSLPTVEHLNLALNRFSGTIPSSITN 63 (505)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~-----------------ip~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~ 63 (505)
|+++| +|.+|+++++|++|++++|.++|. +|..++ .++++|++|++++|.+.+.+|..+++
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 68999 999999999999999999999975 999875 24999999999999999999999999
Q ss_pred CCCCCEEEccCCc-CCc-cCcccccCC------CCCCEEeccCccccCCCCCccccc--ccCCCCCCCEEECcCCCCCcc
Q 010663 64 ASKLTLLELGGNT-FSG-LIPDTIGNL------RNLAWLGLAYNNLTSSTSKLSFLS--SLANCKKLRSLNFIGNPLDGF 133 (505)
Q Consensus 64 l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~ 133 (505)
+++|++|++++|. +++ .+|..++++ ++|++|++++|.++.+| . .+.++++|++|++++|.+.|.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip------~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP------VETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC------CHHHHTTCTTCCEEECCSCCCEEE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC------chhhhccCCCCCEEeCcCCcCccc
Confidence 9999999999998 998 889888876 99999999999999777 5 789999999999999999999
Q ss_pred CchHHhhccccccEEEeecCCccccCCccccCCCC-CCEEEccCCccccccCccccCCC--CCCeEeccCccccccCCcc
Q 010663 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISNLSN-LLTLVLEGNKLTGPIPTTFGRLQ--KLQGLFLAFNKLVGSCPDE 210 (505)
Q Consensus 134 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~ 210 (505)
+| .+..+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|++|++++|.+.+.+|..
T Consensus 346 ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 99 78877 79999999999999 88999999999 999999999999 7888887765 8999999999999999998
Q ss_pred CC-------CCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCC-------CCCEEEccCCccc
Q 010663 211 LC-------HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK-------DILFLDFSSNLLV 276 (505)
Q Consensus 211 ~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~l~~n~l~ 276 (505)
+. .+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+.... +|+.|++++|.+.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 88 888999999999999944344456799999999999999944433443332 9999999999998
Q ss_pred cccccccc--cccCCCeeecccccccccCCccccCCCCCcEEeC------cCccccccCCccCcCCCCCCEEECcCCcCc
Q 010663 277 GTLSFDIG--NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDL------AYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (505)
Q Consensus 277 ~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 348 (505)
.+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 6777776 99999999999999997 8999999999999999 56788889999999999999999999999
Q ss_pred ccCCccccCCCCCCEEeCcCCcCccc
Q 010663 349 GSIPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 349 ~~~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
+.+|..+. ++|+.|++++|++...
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CccCHhHh--CcCCEEECcCCCCccc
Confidence 68888765 7999999999988753
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.8e-46 Score=387.58 Aligned_cols=394 Identities=22% Similarity=0.228 Sum_probs=235.3
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|++++..|.+|.++++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l 120 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhcc-CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence 3677777788888888888888888888765566666 788888888888888877777888888888888888888776
Q ss_pred CcccccCCCCCCEEeccCccccCC--CCCccc-----------------ccccCCCCCCC--EEECcCCCCCccCc----
Q 010663 81 IPDTIGNLRNLAWLGLAYNNLTSS--TSKLSF-----------------LSSLANCKKLR--SLNFIGNPLDGFLP---- 135 (505)
Q Consensus 81 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~-----------------~~~l~~l~~L~--~L~l~~n~~~~~~~---- 135 (505)
.|..++++++|++|++++|.+.+. +..... ...+..+++|+ .|++++|.+.+..|
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 666777778888888887777664 211000 01122233333 33333333322211
Q ss_pred -----------------------------------------------------------------------hHHhhcccc
Q 010663 136 -----------------------------------------------------------------------SSIGNLSKS 144 (505)
Q Consensus 136 -----------------------------------------------------------------------~~~~~l~~~ 144 (505)
..+..+ ++
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l-~~ 279 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF-SG 279 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC-TT
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccc-cC
Confidence 113333 46
Q ss_pred ccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCc-cCCCCCCCCeEecc
Q 010663 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPD-ELCHLDRLDKLVLL 223 (505)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~ 223 (505)
|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++|+++
T Consensus 280 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp CSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 778888888777 6777777788888888888887766666677777777777777766654443 35566666666666
Q ss_pred Cccccccc--CccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccc-cccccCCCeeeccccccc
Q 010663 224 GNKFSGSI--PSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFD-IGNLKVLLGINLSENNLS 300 (505)
Q Consensus 224 ~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~ 300 (505)
+|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 66655443 444555555555555555555555555555555555555555554433322 444445555555555444
Q ss_pred ccCCcccc---------------------------CCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCc
Q 010663 301 GDMPATIG---------------------------GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353 (505)
Q Consensus 301 ~~~~~~~~---------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 353 (505)
+..|..++ .+++|++|++++|.+++..|..+..+++|++|++++|++++..|.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 44444444 444555555555555544444555555555555555555555555
Q ss_pred cccCCCCCCEEeCcCCcCcccCCCC-CccCccCcccccCCccCCCC
Q 010663 354 SMEKLFYLRELNLSFNELEGEIPSG-GIFANFTAESFMGNELLCGL 398 (505)
Q Consensus 354 ~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 398 (505)
.+..++.| .|++++|++++..|.. ..+.+++.+++.+|++.|+|
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 55555555 5555555555443322 22344455555566655544
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.7e-46 Score=392.87 Aligned_cols=382 Identities=19% Similarity=0.231 Sum_probs=306.9
Q ss_pred CCccccccchhhhcCCCCcEEEc-cccccccc------------------------------------------------
Q 010663 1 MNNLVGMVSATIFNMSTLKIIIL-INNSLSGS------------------------------------------------ 31 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~l-s~n~~~~~------------------------------------------------ 31 (505)
+|+++|.+|++|+++++|++|+| ++|.+.|.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 37899999999999999999999 77765554
Q ss_pred ----------------------------CchhhhcCCCCCCEEeccCCcccc-----------------cCchhhh--CC
Q 010663 32 ----------------------------LPSRIGLSLPTVEHLNLALNRFSG-----------------TIPSSIT--NA 64 (505)
Q Consensus 32 ----------------------------ip~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l 64 (505)
||..++ ++++|++|+|++|.+++ .+|..++ ++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhceeccccCcccchhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 777777 78889999999988887 3888877 88
Q ss_pred CCCCEEEccCCcCCccCcccccCCCCCCEEeccCcc-ccC--CCCCccccc-ccCCCCCCCEEECcCCCCCccCch--HH
Q 010663 65 SKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN-LTS--STSKLSFLS-SLANCKKLRSLNFIGNPLDGFLPS--SI 138 (505)
Q Consensus 65 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~--~~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~--~~ 138 (505)
++|++|+|++|.+.+.+|..|+++++|++|++++|. +++ .|..+..+. .+..+++|++|++++|.+. .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 899999999888888888888889999999998887 776 353222221 4456668899999999888 7887 78
Q ss_pred hhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCC-CCeEeccCccccccCCccCCCCCC-
Q 010663 139 GNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQK-LQGLFLAFNKLVGSCPDELCHLDR- 216 (505)
Q Consensus 139 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~- 216 (505)
..+ ++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..++.
T Consensus 570 ~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 570 QKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp TTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 887 68999999988888 777 7888888999999998888 78888888888 999999998888 67777766654
Q ss_pred -CCeEeccCcccccccCcc---cc--CCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccc------
Q 010663 217 -LDKLVLLGNKFSGSIPSC---LS--NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIG------ 284 (505)
Q Consensus 217 -L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------ 284 (505)
|+.|++++|.+.+.+|.. +. .+++|+.|++++|.++...+..+..+++|+.|+|++|.+. .+|..+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 889999999888766532 22 3457889999999888543344457889999999999887 4444332
Q ss_pred --cccCCCeeecccccccccCCcccc--CCCCCcEEeCcCccccccCCccCcCCCCCCEEECcC------CcCcccCCcc
Q 010663 285 --NLKVLLGINLSENNLSGDMPATIG--GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSN------NKISGSIPKS 354 (505)
Q Consensus 285 --~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~p~~ 354 (505)
++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 2348999999999998 7888876 88999999999999986 788888899999999976 7788889999
Q ss_pred ccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCcc
Q 010663 355 MEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNEL 394 (505)
Q Consensus 355 l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~ 394 (505)
+..+++|+.|++++|++ +.+|.. ...++..+++.+|+.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred HhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence 99999999999999999 788876 346777788888774
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-45 Score=383.09 Aligned_cols=389 Identities=22% Similarity=0.201 Sum_probs=295.7
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|++++..+.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccc
Confidence 3778888888999999999999999999855566666 899999999999999877788999999999999999999888
Q ss_pred CcccccCCCCCCEEeccCccccCC--CCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc----------------
Q 010663 81 IPDTIGNLRNLAWLGLAYNNLTSS--TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS---------------- 142 (505)
Q Consensus 81 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~---------------- 142 (505)
.+..++++++|++|++++|.+.+. | ..+.++++|++|++++|.+++..+..+..+.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLP------AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCC------GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred cccccCCCCCCCEEeCCCCcccceech------HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 778899999999999999998863 4 6788899999999999988876666554431
Q ss_pred ----------ccccEEEeecCCccc-------------------------------------------------------
Q 010663 143 ----------KSLETLGIANCSISG------------------------------------------------------- 157 (505)
Q Consensus 143 ----------~~L~~L~l~~n~l~~------------------------------------------------------- 157 (505)
.+|++|++++|.+.+
T Consensus 194 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 134444444443210
Q ss_pred ---cCCc---------------------cccCCCCCCEEEccCCccccccCc--------------------cccCCCCC
Q 010663 158 ---NIPP---------------------AISNLSNLLTLVLEGNKLTGPIPT--------------------TFGRLQKL 193 (505)
Q Consensus 158 ---~~~~---------------------~~~~l~~L~~L~l~~n~~~~~~~~--------------------~l~~l~~L 193 (505)
.+|. .+..+++|++|++++|.+ +.+|. .+..+++|
T Consensus 274 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352 (606)
T ss_dssp CCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred ccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCC
Confidence 0000 223334455555555544 23331 22344455
Q ss_pred CeEeccCcccccc--CCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCC-ccccCCCCCCEEEc
Q 010663 194 QGLFLAFNKLVGS--CPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP-STFWRLKDILFLDF 270 (505)
Q Consensus 194 ~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l 270 (505)
++|++++|.+++. ++..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 5555555555443 25555666667777777666663 45667778888888888888887766 67888889999999
Q ss_pred cCCccccccccccccccCCCeeecccccccc-cCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcc
Q 010663 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSG-DMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISG 349 (505)
Q Consensus 271 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 349 (505)
++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..|..+..+++|++|++++|++++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 9998888888888889999999999999887 478888899999999999999998888889999999999999999998
Q ss_pred cCCccccCCCCCCEEeCcCCcCcccCCCC-CccC-ccCcccccCCccCCCCC
Q 010663 350 SIPKSMEKLFYLRELNLSFNELEGEIPSG-GIFA-NFTAESFMGNELLCGLP 399 (505)
Q Consensus 350 ~~p~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~-~~~~~~~~~n~~lc~~~ 399 (505)
..|..+..+++|+.|++++|+++ .+|.. ..+. ++..+++.+|++.|+++
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 88899999999999999999988 45544 2333 47788899999998875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-44 Score=376.52 Aligned_cols=357 Identities=24% Similarity=0.250 Sum_probs=239.8
Q ss_pred ccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCccccc
Q 010663 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (505)
Q Consensus 7 ~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 86 (505)
.+|..+. +++++|++++|.+++..|..+. .+++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTST-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhc-cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 4565554 3799999999999966677777 899999999999999988899999999999999999999999999999
Q ss_pred CCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCC
Q 010663 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNL 166 (505)
Q Consensus 87 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 166 (505)
++++|++|++++|.+++.+. ..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+++..|..+..+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDF-----IPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGG-----SCCTTCTTCCEEECCSSCCCCCCCCTTCCC-TTCCEEECCSSCCCEECHHHHHTT
T ss_pred ccccccEeeccccCcccCCc-----chhccCCcccEEECCCCcccccCcccccCC-cccCEEEcccCcccccChhhhhhh
Confidence 99999999999999988621 446666777777777776664322222233 456666666666555444445555
Q ss_pred CCCC--EEEccCCcccc---------------------------------------------------------------
Q 010663 167 SNLL--TLVLEGNKLTG--------------------------------------------------------------- 181 (505)
Q Consensus 167 ~~L~--~L~l~~n~~~~--------------------------------------------------------------- 181 (505)
++|+ +|++++|.+++
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 5554 44444444332
Q ss_pred ------------ccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCc
Q 010663 182 ------------PIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSN 249 (505)
Q Consensus 182 ------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 249 (505)
..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 22333556677777777777776 56666777777777777777777666666666677777777777
Q ss_pred cCCCCCCc-cccCCCCCCEEEccCCcccccc--ccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCcccccc
Q 010663 250 RFTSVIPS-TFWRLKDILFLDFSSNLLVGTL--SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326 (505)
Q Consensus 250 ~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 326 (505)
.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 66644433 3556666666666666665544 44555666666666666666555555555566666666666665544
Q ss_pred CCc-cCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcc
Q 010663 327 IPE-SFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (505)
Q Consensus 327 ~~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 373 (505)
.+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 433 25555556666666665555555555555555555555555544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-45 Score=394.69 Aligned_cols=390 Identities=22% Similarity=0.257 Sum_probs=302.0
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccC-chhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSL-PSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG 79 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~i-p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 79 (505)
+|++++..|..|.++++|++|++++|...+.+ |..+. ++++|++|+|++|.+++..|..|+++++|++|+|++|.+++
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS-SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc-CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 47888888999999999999999999777788 45555 89999999999999998889999999999999999999998
Q ss_pred cCccc--ccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc-ccc-----------
Q 010663 80 LIPDT--IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS-KSL----------- 145 (505)
Q Consensus 80 ~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~~L----------- 145 (505)
.+|.. ++++++|++|+|++|.+++.+.. ..+.++++|++|++++|.+.+..+..+..+. ++|
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 76665 89999999999999999877311 4688999999999999999887777766541 234
Q ss_pred -------------------cEEEeecCCccccCCccccC--------------------------------------CCC
Q 010663 146 -------------------ETLGIANCSISGNIPPAISN--------------------------------------LSN 168 (505)
Q Consensus 146 -------------------~~L~l~~n~l~~~~~~~~~~--------------------------------------l~~ 168 (505)
++|++++|.+++..+..+.. .++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 45555555443333322211 156
Q ss_pred CCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccC
Q 010663 169 LLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (505)
Q Consensus 169 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 248 (505)
|++|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 77777777777777777788888888888888888888888888888888888888888877788888888888888888
Q ss_pred ccCCCCCCccccCCCCCCEEEccCCccccccc----------------------------------------cccccccC
Q 010663 249 NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS----------------------------------------FDIGNLKV 288 (505)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----------------------------------------~~~~~~~~ 288 (505)
|.+.+..+..|..+++|+.|++++|.+.+... ..+..+++
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCc
Confidence 88887777778888888888888887654210 00124555
Q ss_pred CCeeeccccccccc------------------------------CCccccCCCCCcEEeCcCccccccCCccCcCCCCCC
Q 010663 289 LLGINLSENNLSGD------------------------------MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLE 338 (505)
Q Consensus 289 L~~L~l~~n~~~~~------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 338 (505)
|++|++++|++++. .+..+..+++|+.|+|++|.+++..|..+..+++|+
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence 66666666655421 223456677888888888888877777888888888
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCccCCCCC
Q 010663 339 VMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNELLCGLP 399 (505)
Q Consensus 339 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 399 (505)
.|+|++|++++..|..+. ++|+.|++++|++++..|.. +.++..+++.+||+.|+|+
T Consensus 508 ~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 508 GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 888888888876666555 78888888888888887754 6678889999999999875
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.9e-45 Score=383.18 Aligned_cols=356 Identities=21% Similarity=0.245 Sum_probs=314.3
Q ss_pred CccccccchhhhcCCCCcEEEcccccccc-----------------cCchhhh-cCCCCCCEEeccCCcccccCchhhhC
Q 010663 2 NNLVGMVSATIFNMSTLKIIILINNSLSG-----------------SLPSRIG-LSLPTVEHLNLALNRFSGTIPSSITN 63 (505)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~L~ls~n~~~~-----------------~ip~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~ 63 (505)
|+++| +|.+|+++++|++|+|++|.++| .+|..++ .++++|++|+|++|.+.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 78889 99999999999999999999997 3998873 35999999999999999999999999
Q ss_pred CCCCCEEEccCCc-CCc-cCcccccCCC-------CCCEEeccCccccCCCCCccccc--ccCCCCCCCEEECcCCCCCc
Q 010663 64 ASKLTLLELGGNT-FSG-LIPDTIGNLR-------NLAWLGLAYNNLTSSTSKLSFLS--SLANCKKLRSLNFIGNPLDG 132 (505)
Q Consensus 64 l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~~~~ 132 (505)
+++|++|++++|. +++ .+|..+++++ +|++|++++|.++.+| . .+.++++|+.|++++|.++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip------~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP------ASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC------CHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC------ChhhhhcCCCCCEEECCCCCcc-
Confidence 9999999999998 998 7888776665 9999999999999767 5 7899999999999999999
Q ss_pred cCchHHhhccccccEEEeecCCccccCCccccCCCC-CCEEEccCCccccccCccccCCCC--CCeEeccCccccccCCc
Q 010663 133 FLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSN-LLTLVLEGNKLTGPIPTTFGRLQK--LQGLFLAFNKLVGSCPD 209 (505)
Q Consensus 133 ~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~ 209 (505)
.+| .+..+ ++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|.
T Consensus 587 ~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 888 77777 78999999999999 89999999999 999999999999 78888877754 99999999999987664
Q ss_pred cC---C--CCCCCCeEeccCcccccccCccc-cCCCCCCceeccCccCCCCCCccccC--------CCCCCEEEccCCcc
Q 010663 210 EL---C--HLDRLDKLVLLGNKFSGSIPSCL-SNLTSLRFLYLGSNRFTSVIPSTFWR--------LKDILFLDFSSNLL 275 (505)
Q Consensus 210 ~~---~--~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~l~~n~l 275 (505)
.. . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+. .+|..+.. +++|+.|+|++|++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence 32 2 3458999999999999 566654 58999999999999999 45544333 23899999999999
Q ss_pred ccccccccc--cccCCCeeecccccccccCCccccCCCCCcEEeCcC------ccccccCCccCcCCCCCCEEECcCCcC
Q 010663 276 VGTLSFDIG--NLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY------NRLEGQIPESFDDLTSLEVMNLSNNKI 347 (505)
Q Consensus 276 ~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l 347 (505)
. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++
T Consensus 741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 741 T-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp C-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred c-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8 6777776 89999999999999996 898999999999999976 788889999999999999999999999
Q ss_pred cccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 348 SGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 348 ~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
+.+|..+. ++|+.|++++|++...-+
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred -CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 68888865 699999999999875443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=365.70 Aligned_cols=387 Identities=21% Similarity=0.230 Sum_probs=293.5
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|++++..+.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC
Confidence 3677777778889999999999999988844344555 789999999999988877778888999999999999988877
Q ss_pred CcccccCCCCCCEEeccCccccCC--CCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccc----cEEEeecCC
Q 010663 81 IPDTIGNLRNLAWLGLAYNNLTSS--TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL----ETLGIANCS 154 (505)
Q Consensus 81 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L----~~L~l~~n~ 154 (505)
.+..++++++|++|++++|.+... | ..+.++++|++|++++|.+.+..+..+..+ ++| ++|++++|.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLP------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCC------GGGGGCTTCCEEECTTSCCCEECGGGGHHH-HTCTTCCCEEECTTCC
T ss_pred CCccccccccccEEecCCCccceecCh------hhhcccCCCCEEeCcCCccceecHHHccch-hccchhhhhcccCCCC
Confidence 666788899999999999888763 4 668888889999998888887666666655 455 555655554
Q ss_pred cccc----------------------------------------------------------------------------
Q 010663 155 ISGN---------------------------------------------------------------------------- 158 (505)
Q Consensus 155 l~~~---------------------------------------------------------------------------- 158 (505)
+.+.
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 4432
Q ss_pred -----CCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCcc--------------------CCC
Q 010663 159 -----IPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDE--------------------LCH 213 (505)
Q Consensus 159 -----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--------------------~~~ 213 (505)
.|..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. ...
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred hhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccccc
Confidence 2333445566777777777666 455555555 6666666665554 22221 045
Q ss_pred CCCCCeEeccCccccccc--CccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccc-cccccccCCC
Q 010663 214 LDRLDKLVLLGNKFSGSI--PSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS-FDIGNLKVLL 290 (505)
Q Consensus 214 ~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~ 290 (505)
+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 677777777777776543 56677778888888888887765444 7788888888888888877655 4577888888
Q ss_pred eeecccccccccCCccccCCCCCcEEeCcCcccc-ccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCC
Q 010663 291 GINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE-GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369 (505)
Q Consensus 291 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n 369 (505)
+|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999988888888888888889999999999887 568888888999999999999998888888888899999999999
Q ss_pred cCcccCCCC-CccCccCcccccCCccCCCCC
Q 010663 370 ELEGEIPSG-GIFANFTAESFMGNELLCGLP 399 (505)
Q Consensus 370 ~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 399 (505)
++++..|.. ..+.++..+++.+|++.|++|
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 888776643 456677888888998888765
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.4e-42 Score=361.79 Aligned_cols=367 Identities=24% Similarity=0.289 Sum_probs=226.4
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|++++..+.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..|+++++|++|++++|.+++.
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence 3677777777888888888888888888866666666 788888888888888744444688888888888888888877
Q ss_pred CcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhc-cccccEEEeecCCccccC
Q 010663 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNL-SKSLETLGIANCSISGNI 159 (505)
Q Consensus 81 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~~L~~L~l~~n~l~~~~ 159 (505)
.|..|+++++|++|++++|.+++.+. ..+.++++|++|++++|.+++..+..+... .++|++|++++|.+++..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKL-----GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCC-----CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ChhHccccCCCCEEECCCCcccccCc-----hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 77788888888888888888877632 456677778888888777776655554321 145666666666665544
Q ss_pred Cc---------------------------------------------------cccCCC--CCCEEEccCCccccccCcc
Q 010663 160 PP---------------------------------------------------AISNLS--NLLTLVLEGNKLTGPIPTT 186 (505)
Q Consensus 160 ~~---------------------------------------------------~~~~l~--~L~~L~l~~n~~~~~~~~~ 186 (505)
|. .+..++ +|++|++++|.+++..|..
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 43 333332 2666666666666555566
Q ss_pred ccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCccccc-----ccCc----cccCCCCCCceeccCccCCCCCCc
Q 010663 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG-----SIPS----CLSNLTSLRFLYLGSNRFTSVIPS 257 (505)
Q Consensus 187 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~----~~~~l~~L~~L~l~~n~~~~~~~~ 257 (505)
|+.+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .+..+++|+.|++++|.+.+..+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 6666666666666666665555544444444444444332211 1111 334445555555555555555444
Q ss_pred cccCCCCCCEEEccC----------------------------CccccccccccccccCCCeeecccccccccCC-cccc
Q 010663 258 TFWRLKDILFLDFSS----------------------------NLLVGTLSFDIGNLKVLLGINLSENNLSGDMP-ATIG 308 (505)
Q Consensus 258 ~~~~~~~L~~L~l~~----------------------------n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~ 308 (505)
.|..+++|++|++++ |++.+..+..+..+++|++|++++|.+.+.+| ..+.
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 444444444444433 33333444445555666666666666554443 3455
Q ss_pred CCCCCcEEeCcCccccc--------------------------cCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCC
Q 010663 309 GLKSLQIMDLAYNRLEG--------------------------QIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLR 362 (505)
Q Consensus 309 ~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 362 (505)
.+++|++|++++|++++ .+|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence 55555555555555443 3444555556666666666666655555566666666
Q ss_pred EEeCcCCcCcc
Q 010663 363 ELNLSFNELEG 373 (505)
Q Consensus 363 ~l~l~~n~l~~ 373 (505)
.|++++|++++
T Consensus 508 ~L~Ls~N~l~~ 518 (680)
T 1ziw_A 508 ILDLQHNNLAR 518 (680)
T ss_dssp EEECCSSCCGG
T ss_pred EEeCCCCCccc
Confidence 66666666654
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.9e-43 Score=362.62 Aligned_cols=368 Identities=21% Similarity=0.228 Sum_probs=301.0
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCc-
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG- 79 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~- 79 (505)
+|++++..|.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..++++++|++|++++|.+++
T Consensus 65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 143 (606)
T 3vq2_A 65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce
Confidence 3778888888999999999999999999866677777 89999999999999986666788999999999999998886
Q ss_pred cCcccccCCCCCCEEeccCccccCCCC-Cccccc----------------------------------------------
Q 010663 80 LIPDTIGNLRNLAWLGLAYNNLTSSTS-KLSFLS---------------------------------------------- 112 (505)
Q Consensus 80 ~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~---------------------------------------------- 112 (505)
.+|..++++++|++|++++|.+++.+. .+..+.
T Consensus 144 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHH
T ss_pred echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHH
Confidence 568889999999999999888776521 110000
Q ss_pred ------------------------------------------------------------------------------cc
Q 010663 113 ------------------------------------------------------------------------------SL 114 (505)
Q Consensus 113 ------------------------------------------------------------------------------~l 114 (505)
.+
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l 303 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCC
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhc
Confidence 11
Q ss_pred CCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccc--cCccccCCCC
Q 010663 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGP--IPTTFGRLQK 192 (505)
Q Consensus 115 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~ 192 (505)
..+++|++|++++|.+ +.+|. + .+ ++|++|++++|...+.. .+..+++|++|++++|.+++. .|..+..+++
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp~-~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFPT-L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCCC-C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred cccccCCEEEcccccC-ccccc-C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 1222333333333333 23331 1 22 34555555555333222 455778888999999988865 3788999999
Q ss_pred CCeEeccCccccccCCccCCCCCCCCeEeccCcccccccC-ccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEcc
Q 010663 193 LQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271 (505)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 271 (505)
|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 9999999999885 56889999999999999999998877 678999999999999999999999999999999999999
Q ss_pred CCcccc-ccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCccc
Q 010663 272 SNLLVG-TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350 (505)
Q Consensus 272 ~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 350 (505)
+|.+.+ .+|..+..+++|++|++++|++++..|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++ .
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~ 535 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-T 535 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-C
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-c
Confidence 999988 47888999999999999999999999999999999999999999999988999999999999999999999 6
Q ss_pred CCccccCCC-CCCEEeCcCCcCcccCCC
Q 010663 351 IPKSMEKLF-YLRELNLSFNELEGEIPS 377 (505)
Q Consensus 351 ~p~~l~~l~-~L~~l~l~~n~l~~~~p~ 377 (505)
+|..+..++ +|+.+++++|++.+..+.
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 777788887 599999999999987764
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-42 Score=364.95 Aligned_cols=382 Identities=24% Similarity=0.249 Sum_probs=320.1
Q ss_pred CCCcEEEcccccccccCchhhhcCCCC--CCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCE
Q 010663 16 STLKIIILINNSLSGSLPSRIGLSLPT--VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (505)
Q Consensus 16 ~~L~~L~ls~n~~~~~ip~~~~~~l~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 93 (505)
++|+.|++++|.+.+..|..+. .++. |++|++++|.+++..|..|+.+++|++|++++|.+++..|..|.++++|++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 5677778888888876676665 5644 999999999998877888899999999999999999888888999999999
Q ss_pred EeccCccccCCCCCcccc----cccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCcccc--CCccccC--
Q 010663 94 LGLAYNNLTSSTSKLSFL----SSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGN--IPPAISN-- 165 (505)
Q Consensus 94 L~L~~n~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~--~~~~~~~-- 165 (505)
|++++|...+......+. ..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+... .+..+..
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccc
Confidence 999877544210000000 257889999999999999998878778887 7899999999875422 2223332
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCC-ccCCCCCCCCeEeccCcccccccCccccCCCCCCce
Q 010663 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCP-DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFL 244 (505)
Q Consensus 166 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 244 (505)
.++|+.|++++|.+++..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 3589999999999999889999999999999999999988766 688999999999999999998888899999999999
Q ss_pred eccCccCC--CCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCC--------ccccCCCCCc
Q 010663 245 YLGSNRFT--SVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMP--------ATIGGLKSLQ 314 (505)
Q Consensus 245 ~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~ 314 (505)
++++|.+. +..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 99999987 5688899999999999999999998888889999999999999999986422 2378899999
Q ss_pred EEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCC-C-ccCccCcccccCC
Q 010663 315 IMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG-G-IFANFTAESFMGN 392 (505)
Q Consensus 315 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~-~-~~~~~~~~~~~~n 392 (505)
+|++++|+++...+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.. . .+.++..+++.+|
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 9999999999555567999999999999999999777777899999999999999999866643 2 4678889999999
Q ss_pred ccCCCCC
Q 010663 393 ELLCGLP 399 (505)
Q Consensus 393 ~~lc~~~ 399 (505)
|+.|+|+
T Consensus 620 ~~~c~c~ 626 (680)
T 1ziw_A 620 PFDCTCE 626 (680)
T ss_dssp CCCBCCC
T ss_pred CcccCCc
Confidence 9999986
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=351.54 Aligned_cols=377 Identities=22% Similarity=0.255 Sum_probs=283.1
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|+++ .+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|++++..|..|+++++|++|++++|.++ .
T Consensus 9 ~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 83 (520)
T 2z7x_B 9 KNGLI-HVPKDLS--QKTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K 83 (520)
T ss_dssp TSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E
T ss_pred CCCcc-ccccccc--ccccEEECCCCcccccChhhcc-ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e
Confidence 36677 5777665 8999999999999955556676 8999999999999999888999999999999999999998 4
Q ss_pred CcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccc--cEEEeecCCc--c
Q 010663 81 IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL--ETLGIANCSI--S 156 (505)
Q Consensus 81 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L--~~L~l~~n~l--~ 156 (505)
+|.. .+++|++|++++|.+++.+ .+..+.++++|++|++++|.+.+ ..+..+ ++| ++|++++|.+ .
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~----~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l-~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALP----ICKEFGNMSQLKFLGLSTTHLEK---SSVLPI-AHLNISKVLLVLGETYGE 153 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCC----CCGGGGGCTTCCEEEEEESSCCG---GGGGGG-TTSCEEEEEEEECTTTTS
T ss_pred cCcc--ccCCccEEeccCCcccccc----chhhhccCCcceEEEecCcccch---hhcccc-ccceeeEEEeeccccccc
Confidence 5655 8999999999999998742 11678899999999999999886 345555 567 9999999998 6
Q ss_pred ccCCccccC--------------------------CCCCCEEEccCCc-------cccccCccccCC-------------
Q 010663 157 GNIPPAISN--------------------------LSNLLTLVLEGNK-------LTGPIPTTFGRL------------- 190 (505)
Q Consensus 157 ~~~~~~~~~--------------------------l~~L~~L~l~~n~-------~~~~~~~~l~~l------------- 190 (505)
+..|..+.. +++|+.+++++|. +.+.+| .++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 666655544 3344444444443 222221 12222
Q ss_pred --------------CCCCeEeccCccccccCCccC-----CCCCCCC--------------------------eEeccCc
Q 010663 191 --------------QKLQGLFLAFNKLVGSCPDEL-----CHLDRLD--------------------------KLVLLGN 225 (505)
Q Consensus 191 --------------~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~--------------------------~L~l~~n 225 (505)
++|++|++++|.+.+.+|..+ ..+++|+ .|++++|
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 255555566666655566555 4444444 4444444
Q ss_pred ccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccc--ccccccccccCCCeeecccccccccC
Q 010663 226 KFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG--TLSFDIGNLKVLLGINLSENNLSGDM 303 (505)
Q Consensus 226 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~ 303 (505)
.+.+.. ....+++|+.|++++|.+++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|.+.+.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 433211 12577889999999999988888888889999999999999886 55567888899999999999998756
Q ss_pred Ccc-ccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCC--Cc
Q 010663 304 PAT-IGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG--GI 380 (505)
Q Consensus 304 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~--~~ 380 (505)
|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 466 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc
Confidence 654 77888999999999998887777664 78999999999998 78887778999999999999988 45643 44
Q ss_pred cCccCcccccCCccCCCCC
Q 010663 381 FANFTAESFMGNELLCGLP 399 (505)
Q Consensus 381 ~~~~~~~~~~~n~~lc~~~ 399 (505)
+.++..+++.+|++.|+|+
T Consensus 467 l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CCcccEEECcCCCCcccCC
Confidence 6677788888888887653
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-42 Score=357.08 Aligned_cols=380 Identities=21% Similarity=0.250 Sum_probs=191.6
Q ss_pred CccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc-
Q 010663 2 NNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL- 80 (505)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~- 80 (505)
|++++..|.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 455555555666666666666666666544444444 566666666666666555455566666666666666665542
Q ss_pred CcccccCCCCCCEEeccCcc-ccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccC
Q 010663 81 IPDTIGNLRNLAWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNI 159 (505)
Q Consensus 81 ~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 159 (505)
.|..++++++|++|++++|. +...+. ..+.++++|++|++++|.+.+..|..+..+ ++|++|+++.|.+. .+
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~-~~ 187 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRR-----IDFAGLTSLNELEIKALSLRNYQSQSLKSI-RDIHHLTLHLSESA-FL 187 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETTCCEECTTTTTTC-SEEEEEEEECSBST-TH
T ss_pred hhhhhhccCCccEEECCCCccccccCH-----hhhhcccccCeeeccCCcccccChhhhhcc-ccCceEecccCccc-cc
Confidence 34455666666666666665 222221 345555666666666666655555554443 33444444443332 11
Q ss_pred Ccc-ccCCCCCCEEEccCCcccccc--C-----------------------------ccccCCCCCCeEeccCccccc--
Q 010663 160 PPA-ISNLSNLLTLVLEGNKLTGPI--P-----------------------------TTFGRLQKLQGLFLAFNKLVG-- 205 (505)
Q Consensus 160 ~~~-~~~l~~L~~L~l~~n~~~~~~--~-----------------------------~~l~~l~~L~~L~l~~n~~~~-- 205 (505)
|.. +..+++|++|++++|.+++.. | ..+..+++|+.+++++|.+.+
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 111 123445555555555554321 0 001112222222222222211
Q ss_pred --------------------------------------------------------cCCccC-CCCCCCCeEeccCcccc
Q 010663 206 --------------------------------------------------------SCPDEL-CHLDRLDKLVLLGNKFS 228 (505)
Q Consensus 206 --------------------------------------------------------~~~~~~-~~~~~L~~L~l~~n~l~ 228 (505)
.+|..+ ..+++|++|++++|+++
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 122222 23445555555555554
Q ss_pred cccCc---cccCCCCCCceeccCccCCCCCC--ccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccC
Q 010663 229 GSIPS---CLSNLTSLRFLYLGSNRFTSVIP--STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (505)
Q Consensus 229 ~~~~~---~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 303 (505)
+.+|. .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|.++ .+
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l 425 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV 425 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cc
Confidence 43321 23444555555555555543321 23444555555555555554 33444444555555555555544 22
Q ss_pred CccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCC-CccC
Q 010663 304 PATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG-GIFA 382 (505)
Q Consensus 304 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~ 382 (505)
|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|.. ..+.
T Consensus 426 ~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 426 KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 2222 134555555555555321 35667777777777776 4554 356677777777777777655542 4455
Q ss_pred ccCcccccCCccCCCCC
Q 010663 383 NFTAESFMGNELLCGLP 399 (505)
Q Consensus 383 ~~~~~~~~~n~~lc~~~ 399 (505)
++..+++.+|++.|++|
T Consensus 498 ~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred ccCEEEecCCCccCCCc
Confidence 66667777777766554
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.5e-42 Score=343.24 Aligned_cols=357 Identities=20% Similarity=0.212 Sum_probs=270.0
Q ss_pred CCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccC-chhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEE
Q 010663 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTI-PSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWL 94 (505)
Q Consensus 16 ~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 94 (505)
++|++|++++|.+++..|..+. .+++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 6788888888888755566666 7888888888888776544 4567888888888888888887778888888888888
Q ss_pred eccCccccCC-CCCcccccccCCCCCCCEEECcCCCCCccCchH-HhhccccccEEEeecCCccccCCccccCC--CCCC
Q 010663 95 GLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSS-IGNLSKSLETLGIANCSISGNIPPAISNL--SNLL 170 (505)
Q Consensus 95 ~L~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~ 170 (505)
++++|.+++. +.. ..+..+++|++|++++|.+.+..|.. +..+ ++|++|++++|.+.+..+..+..+ .+|+
T Consensus 109 ~L~~n~l~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 109 TLTQCNLDGAVLSG----NFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp ECTTSCCBTHHHHS----STTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred eCCCCCCCccccCc----ccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhcccccccc
Confidence 8888887763 210 33777888888888888888776765 5555 678888888888887777777665 6778
Q ss_pred EEEccCCccccccCcc--------ccCCCCCCeEeccCccccccCCccCCC---CCCCCeEeccCccccccc--------
Q 010663 171 TLVLEGNKLTGPIPTT--------FGRLQKLQGLFLAFNKLVGSCPDELCH---LDRLDKLVLLGNKFSGSI-------- 231 (505)
Q Consensus 171 ~L~l~~n~~~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~-------- 231 (505)
.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+.. .++|+.|++++|...+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 8888888877544333 235577888888888887766665543 367888888877544321
Q ss_pred --Ccccc--CCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccc
Q 010663 232 --PSCLS--NLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATI 307 (505)
Q Consensus 232 --~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 307 (505)
+..+. ..++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 11111 23578888888888888888888888888888888888887777788888888888888888887777788
Q ss_pred cCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCC
Q 010663 308 GGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSG 378 (505)
Q Consensus 308 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~ 378 (505)
+.+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 88888888888888888777888888888888888888888766666778888888888888888887753
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=350.00 Aligned_cols=366 Identities=20% Similarity=0.250 Sum_probs=296.8
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCc-
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG- 79 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~- 79 (505)
+|++++..|.+|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..++++++|++|++++|.+++
T Consensus 61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 139 (570)
T 2z63_A 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc-CccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence 3678887788899999999999999999854456666 89999999999999885544578899999999999999887
Q ss_pred cCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCC----CEEECcCCCCCcc----------------------
Q 010663 80 LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL----RSLNFIGNPLDGF---------------------- 133 (505)
Q Consensus 80 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L----~~L~l~~n~~~~~---------------------- 133 (505)
.+|..++++++|++|++++|.+++.+. ..+..+++| +.+++++|.+.+.
T Consensus 140 ~lp~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 214 (570)
T ss_dssp CCCGGGGGCTTCCEEECTTSCCCEECG-----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCT
T ss_pred cChhhhcccCCCCEEeCcCCccceecH-----HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccc
Confidence 468889999999999999998876632 233333444 4455554443322
Q ss_pred -----------------------------------------------------------CchHHhhccccccEEEeecCC
Q 010663 134 -----------------------------------------------------------LPSSIGNLSKSLETLGIANCS 154 (505)
Q Consensus 134 -----------------------------------------------------------~~~~~~~l~~~L~~L~l~~n~ 154 (505)
.|..+..+ ++|++|++++|.
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 293 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVT 293 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCcc
Confidence 12223333 467777777776
Q ss_pred ccccCCccccCCCCCCEEEccCCccc---------------------cccCccccCCCCCCeEeccCccccccC--CccC
Q 010663 155 ISGNIPPAISNLSNLLTLVLEGNKLT---------------------GPIPTTFGRLQKLQGLFLAFNKLVGSC--PDEL 211 (505)
Q Consensus 155 l~~~~~~~~~~l~~L~~L~l~~n~~~---------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~ 211 (505)
+. .+|..+..+ +|++|++++|.+. +..+. ..+++|++|++++|.+++.. +..+
T Consensus 294 l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 294 IE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp EC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred ch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc
Confidence 66 466666555 6666666665554 22222 57889999999999987654 6778
Q ss_pred CCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCC-ccccCCCCCCEEEccCCccccccccccccccCCC
Q 010663 212 CHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP-STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLL 290 (505)
Q Consensus 212 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 290 (505)
..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 8999999999999999865444 8999999999999999998766 5788999999999999999999999999999999
Q ss_pred eeeccccccc-ccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCC
Q 010663 291 GINLSENNLS-GDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369 (505)
Q Consensus 291 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n 369 (505)
+|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999997 578999999999999999999999988999999999999999999999988888999999999999999
Q ss_pred cCcccCCCC
Q 010663 370 ELEGEIPSG 378 (505)
Q Consensus 370 ~l~~~~p~~ 378 (505)
++++.+|..
T Consensus 529 ~~~~~~~~~ 537 (570)
T 2z63_A 529 PWDCSCPRI 537 (570)
T ss_dssp CBCCCTTTT
T ss_pred cccCCCcch
Confidence 999998865
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=344.86 Aligned_cols=357 Identities=21% Similarity=0.294 Sum_probs=285.3
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCc-
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSG- 79 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~- 79 (505)
+|++++..|.+|.++++|++|++++|.+++..|..+. .+++|++|++++|+++ .+|.. .+++|++|++++|.+++
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDAL 105 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhh-cccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccc
Confidence 4788888889999999999999999999966677887 8999999999999998 67766 89999999999999997
Q ss_pred cCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCC--CEEECcCCCC--CccCchHHhhcc-------------
Q 010663 80 LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL--RSLNFIGNPL--DGFLPSSIGNLS------------- 142 (505)
Q Consensus 80 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~~~~l~------------- 142 (505)
.+|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 106 ~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 106 PICKEFGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CCCGGGGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred cchhhhccCCcceEEEecCcccchh--------hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 4789999999999999999998752 45667777 9999999998 666666655421
Q ss_pred ------------ccccEEEeecCC-------ccccCCccccC---------------------------CCCCCEEEccC
Q 010663 143 ------------KSLETLGIANCS-------ISGNIPPAISN---------------------------LSNLLTLVLEG 176 (505)
Q Consensus 143 ------------~~L~~L~l~~n~-------l~~~~~~~~~~---------------------------l~~L~~L~l~~ 176 (505)
++|+.|++++|. +.+.+| .+.. .++|++|++++
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 234444444432 111111 1111 23555556666
Q ss_pred CccccccCccc-----cCCCC--------------------------CCeEeccCccccccCCccCCCCCCCCeEeccCc
Q 010663 177 NKLTGPIPTTF-----GRLQK--------------------------LQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN 225 (505)
Q Consensus 177 n~~~~~~~~~l-----~~l~~--------------------------L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 225 (505)
|.+++.+|..+ +.+++ |+.|++++|.+.... ....+++|++|++++|
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 66655555555 44544 455555555443221 1267899999999999
Q ss_pred ccccccCccccCCCCCCceeccCccCCC--CCCccccCCCCCCEEEccCCcccccccc-ccccccCCCeeeccccccccc
Q 010663 226 KFSGSIPSCLSNLTSLRFLYLGSNRFTS--VIPSTFWRLKDILFLDFSSNLLVGTLSF-DIGNLKVLLGINLSENNLSGD 302 (505)
Q Consensus 226 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~ 302 (505)
++++..|..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 9999899999999999999999999997 5667899999999999999999985655 478899999999999999888
Q ss_pred CCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEeCcCCcCcccCC
Q 010663 303 MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKS-MEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~n~l~~~~p 376 (505)
.|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.+++++|++.+..+
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 887664 79999999999999 78888889999999999999999 46654 8999999999999999988765
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-41 Score=343.82 Aligned_cols=362 Identities=23% Similarity=0.290 Sum_probs=242.8
Q ss_pred CCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEe
Q 010663 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (505)
Q Consensus 16 ~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 95 (505)
...++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 33455666666655 4555432 4566666666666544445556666666666666666555555555666666666
Q ss_pred ccCccccCCCCCcccccccCCCCCCCEEECcCCCCCc-cCchHHhhccccccEEEeecCCccccCCccccCCCCC--CEE
Q 010663 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG-FLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNL--LTL 172 (505)
Q Consensus 96 L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L 172 (505)
+++|.++.+| .. .+++|++|++++|.+++ .+|..+..+ ++|++|++++|.+.+. .+..+++| ++|
T Consensus 107 Ls~N~l~~lp------~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 107 VSHNRLQNIS------CC--PMASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQL---DLLPVAHLHLSCI 174 (562)
T ss_dssp CTTSCCCEEC------SC--CCTTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred CCCCcCCccC------cc--ccccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccccC---chhhhhhceeeEE
Confidence 6666555444 11 45556666666665554 234555555 4566666666555432 23333333 555
Q ss_pred EccCCcc--ccccCccccCC------------------------------------------------------------
Q 010663 173 VLEGNKL--TGPIPTTFGRL------------------------------------------------------------ 190 (505)
Q Consensus 173 ~l~~n~~--~~~~~~~l~~l------------------------------------------------------------ 190 (505)
++++|.+ ++..|..+..+
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 5555555 43333333322
Q ss_pred ---------------------CCCCeEeccCccccccCCccC-----CCC--------------------------CCCC
Q 010663 191 ---------------------QKLQGLFLAFNKLVGSCPDEL-----CHL--------------------------DRLD 218 (505)
Q Consensus 191 ---------------------~~L~~L~l~~n~~~~~~~~~~-----~~~--------------------------~~L~ 218 (505)
++|++|++++|.+.+.+|..+ ..+ .+|+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 266677777777776666654 222 2355
Q ss_pred eEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccc--ccccccccccCCCeeeccc
Q 010663 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG--TLSFDIGNLKVLLGINLSE 296 (505)
Q Consensus 219 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~ 296 (505)
+|++++|.+.... ....+++|+.|++++|.+++..|..+..+++|++|++++|++.+ ..|..+..+++|++|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 5666665554211 12678899999999999999889999999999999999999986 3356688999999999999
Q ss_pred ccccccCCc-cccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccC
Q 010663 297 NNLSGDMPA-TIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (505)
Q Consensus 297 n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 375 (505)
|.+++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CC
Confidence 999875555 478889999999999999887776654 78999999999998 67877779999999999999998 46
Q ss_pred CCC--CccCccCcccccCCccCCCCC
Q 010663 376 PSG--GIFANFTAESFMGNELLCGLP 399 (505)
Q Consensus 376 p~~--~~~~~~~~~~~~~n~~lc~~~ 399 (505)
|.. ..+.++..+++.+|++.|+|+
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 653 556777888899999888764
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-41 Score=337.45 Aligned_cols=348 Identities=22% Similarity=0.248 Sum_probs=304.6
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|++++..|.+|.++++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 39 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred CCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence 47888888999999999999999999998788655444899999999999999988899999999999999999999986
Q ss_pred Cccc--ccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc-ccccEEEeecCCccc
Q 010663 81 IPDT--IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS-KSLETLGIANCSISG 157 (505)
Q Consensus 81 ~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~~L~~L~l~~n~l~~ 157 (505)
.+.. +.++++|++|++++|.+.+.... ..+.++++|++|++++|.+.+..+..+..+. .+|+.|++++|.+.+
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPA----SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCCCC----GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred ccCcccccCcccCCEEECCCCccCccCcc----cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 5555 99999999999999999988321 2378999999999999999988888777652 579999999999986
Q ss_pred cCCcc--------ccCCCCCCEEEccCCccccccCccccCC---CCCCeEeccCccccccCC----------ccCC--CC
Q 010663 158 NIPPA--------ISNLSNLLTLVLEGNKLTGPIPTTFGRL---QKLQGLFLAFNKLVGSCP----------DELC--HL 214 (505)
Q Consensus 158 ~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~----------~~~~--~~ 214 (505)
..+.. +..+++|++|++++|.+++..|..+... ++|+.|++++|...+... ..+. ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 54433 3366899999999999998888777654 899999999886554321 1121 23
Q ss_pred CCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeec
Q 010663 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINL 294 (505)
Q Consensus 215 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 294 (505)
++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred ccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCC
Q 010663 295 SENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352 (505)
Q Consensus 295 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 352 (505)
++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999998889999999999999999999998777788999999999999999998776
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-41 Score=358.80 Aligned_cols=374 Identities=24% Similarity=0.270 Sum_probs=290.6
Q ss_pred cCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccC-chhhhCCCCCCEEEccCCcCCccCcccccCCCCCC
Q 010663 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTI-PSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92 (505)
Q Consensus 14 ~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 92 (505)
-.++|++|+|++|.+++..|..+. .+++|++|+|++|...+.+ |..|+++++|++|+|++|.+++..|..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 468899999999999976777777 8999999999999766566 78899999999999999999999999999999999
Q ss_pred EEeccCccccCC-CCCcccccccCCCCCCCEEECcCCCCCccCc-hHHhhccccccEEEeecCCccccCCccccCC--CC
Q 010663 93 WLGLAYNNLTSS-TSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPAISNL--SN 168 (505)
Q Consensus 93 ~L~L~~n~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l--~~ 168 (505)
+|+|++|.+++. +.. ..+.++++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+++..+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKD----GYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CEECTTCCCSSCCSTT----CCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred EeeCcCCCCCcccccC----ccccccCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 999999999874 321 348899999999999999987655 567887 799999999999987777666544 44
Q ss_pred ------------------------------CCEEEccCCccccccCccccC-----------------------------
Q 010663 169 ------------------------------LLTLVLEGNKLTGPIPTTFGR----------------------------- 189 (505)
Q Consensus 169 ------------------------------L~~L~l~~n~~~~~~~~~l~~----------------------------- 189 (505)
|++|++++|.+++..+..+..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 455555555444333322211
Q ss_pred ---------CCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCcccc
Q 010663 190 ---------LQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFW 260 (505)
Q Consensus 190 ---------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 260 (505)
.++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+++..+..|.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 14677777777777777777788888888888888888888788888888899999998888888888888
Q ss_pred CCCCCCEEEccCCccccccccccccccCCCeeecccccccccC------------------C------------------
Q 010663 261 RLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM------------------P------------------ 304 (505)
Q Consensus 261 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~------------------~------------------ 304 (505)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.. |
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence 8889999999998888777777888888888888888766311 1
Q ss_pred ----ccccCCCCCcEEeCcCccccccC------------------------------CccCcCCCCCCEEECcCCcCccc
Q 010663 305 ----ATIGGLKSLQIMDLAYNRLEGQI------------------------------PESFDDLTSLEVMNLSNNKISGS 350 (505)
Q Consensus 305 ----~~~~~l~~L~~L~l~~n~l~~~~------------------------------~~~~~~l~~L~~L~l~~n~l~~~ 350 (505)
..+..+++|+.|++++|++++.. +..+..+++|++|+|++|.+++.
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence 01235566777777777665321 23456667777888888888877
Q ss_pred CCccccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCcc
Q 010663 351 IPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNEL 394 (505)
Q Consensus 351 ~p~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~ 394 (505)
.|..+..+++|+.|++++|++++..|.. ...++..+++.+|..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQL 538 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCC-CCSCCCEEEEEEECC
T ss_pred ChhHccchhhhheeECCCCCCCccChhh-hhccccEEECCCCcC
Confidence 7777888889999999999888654443 336677777777763
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.2e-40 Score=336.67 Aligned_cols=355 Identities=21% Similarity=0.224 Sum_probs=278.7
Q ss_pred CccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccC
Q 010663 2 NNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLI 81 (505)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 81 (505)
|++++ +|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|+++++|++|++++|.++ .+
T Consensus 41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 115 (562)
T 3a79_B 41 RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI 115 (562)
T ss_dssp SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EE
T ss_pred CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-cc
Confidence 55664 666553 7888888888888844445665 7888888888888888777888888888888888888887 45
Q ss_pred cccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccc--cEEEeecCCc--cc
Q 010663 82 PDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL--ETLGIANCSI--SG 157 (505)
Q Consensus 82 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L--~~L~l~~n~l--~~ 157 (505)
|.. .+++|++|++++|.+++.+. ...+.++++|++|++++|.+.+. .+..+ ++| ++|++++|.+ ++
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~----p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPV----CKEFGNLTKLTFLGLSAAKFRQL---DLLPV-AHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCC----CGGGGGCTTCCEEEEECSBCCTT---TTGGG-TTSCEEEEEEEESSCCCCS
T ss_pred Ccc--ccccCCEEECCCCCccccCc----hHhhcccCcccEEecCCCccccC---chhhh-hhceeeEEEeecccccccc
Confidence 554 78888888888888877531 15677888888888888887753 23333 344 8888888877 55
Q ss_pred cCCccccCCC----------------------------------------------------------------------
Q 010663 158 NIPPAISNLS---------------------------------------------------------------------- 167 (505)
Q Consensus 158 ~~~~~~~~l~---------------------------------------------------------------------- 167 (505)
..|..+..+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 5555554433
Q ss_pred -----------CCCEEEccCCccccccCccc-----cCCC--------------------------CCCeEeccCccccc
Q 010663 168 -----------NLLTLVLEGNKLTGPIPTTF-----GRLQ--------------------------KLQGLFLAFNKLVG 205 (505)
Q Consensus 168 -----------~L~~L~l~~n~~~~~~~~~l-----~~l~--------------------------~L~~L~l~~n~~~~ 205 (505)
+|++|++++|.+++.+|..+ ..++ +|++|++++|.+..
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 67788888888887777765 3333 46666666666543
Q ss_pred cCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCC--CCccccCCCCCCEEEccCCcccccccc-c
Q 010663 206 SCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV--IPSTFWRLKDILFLDFSSNLLVGTLSF-D 282 (505)
Q Consensus 206 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~ 282 (505)
.. ....+++|++|++++|.+++..|..+..+++|+.|++++|++++. +|..+..+++|+.|++++|.+.+.+|. .
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 21 126789999999999999998999999999999999999999974 346788999999999999999984554 5
Q ss_pred cccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCcc-ccCCCCC
Q 010663 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKS-MEKLFYL 361 (505)
Q Consensus 283 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L 361 (505)
+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 78899999999999999887777654 79999999999999 67777779999999999999999 56655 8999999
Q ss_pred CEEeCcCCcCcccCCC
Q 010663 362 RELNLSFNELEGEIPS 377 (505)
Q Consensus 362 ~~l~l~~n~l~~~~p~ 377 (505)
+.+++++|++.+.+|.
T Consensus 500 ~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCEECCSCCBCCCHHH
T ss_pred CEEEecCCCcCCCcch
Confidence 9999999999987764
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-38 Score=333.06 Aligned_cols=391 Identities=21% Similarity=0.221 Sum_probs=254.1
Q ss_pred CccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccC
Q 010663 2 NNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLI 81 (505)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 81 (505)
|++++..|.+|.++++|++|+|++|.++ .+|+..+..+++|++|+|++|++++..+..|.++++|++|++++|.+++..
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 5666666666777777777777777766 454443336677777777777766555556667777777777777776665
Q ss_pred cccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc---ccccEEEeecCCcccc
Q 010663 82 PDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS---KSLETLGIANCSISGN 158 (505)
Q Consensus 82 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~---~~L~~L~l~~n~l~~~ 158 (505)
+..|+++++|++|++++|.++..+. ...+..+++|++|++++|.+++..+..+..+. .....++++.|.+...
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCC----CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred hhhhhcCcccCeeccccCccccCCC----chhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 5566677777777777776655411 04456666777777777766655554443321 0111222222222110
Q ss_pred CCc-----------------------------------------------------------------------------
Q 010663 159 IPP----------------------------------------------------------------------------- 161 (505)
Q Consensus 159 ~~~----------------------------------------------------------------------------- 161 (505)
.+.
T Consensus 217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 296 (635)
T 4g8a_A 217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 296 (635)
T ss_dssp CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence 000
Q ss_pred ----cccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCc-------------------cCCCCCCCC
Q 010663 162 ----AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPD-------------------ELCHLDRLD 218 (505)
Q Consensus 162 ----~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-------------------~~~~~~~L~ 218 (505)
.+..+.+++.+++.++.+... ..+.....|+.|++.+|.+....+. ....+++|+
T Consensus 297 ~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~ 374 (635)
T 4g8a_A 297 GIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 374 (635)
T ss_dssp ECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCC
T ss_pred chhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccc
Confidence 000011111222222111110 0122233444444444443322111 122345666
Q ss_pred eEeccCccccc-------------------------ccCccccCCCCCCceeccCccCCCCCC-ccccCCCCCCEEEccC
Q 010663 219 KLVLLGNKFSG-------------------------SIPSCLSNLTSLRFLYLGSNRFTSVIP-STFWRLKDILFLDFSS 272 (505)
Q Consensus 219 ~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~ 272 (505)
.+++++|.+.. ..+..+..+++|+.+++..+......+ ..+..+++++.++++.
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred cchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 66666655431 123345566777777777666554433 4677889999999999
Q ss_pred CccccccccccccccCCCeeeccccccc-ccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccC
Q 010663 273 NLLVGTLSFDIGNLKVLLGINLSENNLS-GDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351 (505)
Q Consensus 273 n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 351 (505)
|.+.+..+..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 9999888888999999999999999754 457888999999999999999999999999999999999999999999988
Q ss_pred CccccCCCCCCEEeCcCCcCcccCCCC-Ccc-CccCcccccCCccCCCCC
Q 010663 352 PKSMEKLFYLRELNLSFNELEGEIPSG-GIF-ANFTAESFMGNELLCGLP 399 (505)
Q Consensus 352 p~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~-~~~~~~~~~~n~~lc~~~ 399 (505)
|..+..+++|+.|++++|++++..|.. ..+ .+++.+++.+||+.|+|.
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999988865 223 578889999999999874
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.5e-40 Score=336.67 Aligned_cols=375 Identities=21% Similarity=0.225 Sum_probs=251.0
Q ss_pred ccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCccccc
Q 010663 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (505)
Q Consensus 7 ~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 86 (505)
.+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|++++..|..|+++++|++|++++|.+++..|..|+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4665553 7999999999999966677777 899999999999999988889999999999999999999988888899
Q ss_pred CCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCc-hHHhhccccccEEEeecCCccccCCccccC
Q 010663 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPAISN 165 (505)
Q Consensus 87 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~ 165 (505)
++++|++|++++|.+++.+. ...+.++++|++|++++|.+.+.+| ..+..+ ++|++|++++|.+++..|..+..
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGV----TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTTTT
T ss_pred cCCCCcEEECCCCcccccch----hhhhhccCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChhhhhc
Confidence 99999999999999986521 1568899999999999998554555 567777 79999999999999999999999
Q ss_pred CCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccC--C-ccCCCCCCCCeEeccCcccccccCcc--------
Q 010663 166 LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSC--P-DELCHLDRLDKLVLLGNKFSGSIPSC-------- 234 (505)
Q Consensus 166 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~~L~~L~l~~n~l~~~~~~~-------- 234 (505)
+++|++|++++|.+....+..+..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..+..
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 999999999999987433333467899999999999998742 1 11223344444444444332210000
Q ss_pred -------------------------------------------------------ccCCCCCCceeccCccCCCCCCccc
Q 010663 235 -------------------------------------------------------LSNLTSLRFLYLGSNRFTSVIPSTF 259 (505)
Q Consensus 235 -------------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~~~~ 259 (505)
+...++|+.|++++|.+. .+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 001123444444444443 233322
Q ss_pred -cCCCCCCEEEccCCcccccccc---ccccccCCCeeecccccccccCC--ccccCCCCCcEEeCcCccccccCCccCcC
Q 010663 260 -WRLKDILFLDFSSNLLVGTLSF---DIGNLKVLLGINLSENNLSGDMP--ATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (505)
Q Consensus 260 -~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 333 (505)
..+++|++|++++|.+.+..|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 3455555555555555544321 23445555555555555543221 23445555555555555554 34444444
Q ss_pred CCCCCEEECcCCcCcccCCcc------------------ccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCc
Q 010663 334 LTSLEVMNLSNNKISGSIPKS------------------MEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNE 393 (505)
Q Consensus 334 l~~L~~L~l~~n~l~~~~p~~------------------l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~ 393 (505)
+++|++|++++|.+++ +|.. ...+++|++|++++|+++ .+|....+.++..+++.+|.
T Consensus 409 ~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp CTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC
T ss_pred cccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc
Confidence 5555555555554442 1111 135667777777777776 56655556666677777765
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=329.40 Aligned_cols=322 Identities=22% Similarity=0.216 Sum_probs=255.6
Q ss_pred CcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEecc
Q 010663 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (505)
Q Consensus 18 L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 97 (505)
-+.++.+++.++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 367889999998 8998664 689999999999998888899999999999999999999889999999999999999
Q ss_pred CccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCC
Q 010663 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGN 177 (505)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 177 (505)
+|.++..+. ..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 89 ~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 89 SNRLKLIPL-----GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp SSCCCSCCT-----TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CCcCCccCc-----ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 999998863 457889999999999999998888888877 78999999999998888888888999999999999
Q ss_pred ccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCc
Q 010663 178 KLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPS 257 (505)
Q Consensus 178 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 257 (505)
.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.|++++|.+++..+.
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 98876666788888999999998888887777888888888888888877777766665566777788877777765555
Q ss_pred cccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCC
Q 010663 258 TFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSL 337 (505)
Q Consensus 258 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 337 (505)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+..|..+++|
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 66677777777777777666555556666666666666666666556666666666666666666665555555666666
Q ss_pred CEEECcCCcCcc
Q 010663 338 EVMNLSNNKISG 349 (505)
Q Consensus 338 ~~L~l~~n~l~~ 349 (505)
++|++++|.+..
T Consensus 323 ~~L~l~~N~l~c 334 (477)
T 2id5_A 323 ETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCccC
Confidence 666666666553
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=323.93 Aligned_cols=348 Identities=22% Similarity=0.216 Sum_probs=294.7
Q ss_pred CCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCE
Q 010663 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRS 122 (505)
Q Consensus 43 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~ 122 (505)
-+.++.+++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++.+. ..+.++++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLRT 84 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCE
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCCE
Confidence 357888888887 6776553 589999999999998888899999999999999999888732 67889999999
Q ss_pred EECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCcc
Q 010663 123 LNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNK 202 (505)
Q Consensus 123 L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 202 (505)
|++++|.++...+..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 85 L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EECCSSCCCSCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EECCCCcCCccCcccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 9999999986555556676 789999999999998888889999999999999999998888889999999999999999
Q ss_pred ccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccc
Q 010663 203 LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFD 282 (505)
Q Consensus 203 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 282 (505)
+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+.+..+..
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 98777777889999999999999999887878899999999999998888777777777779999999999998666667
Q ss_pred cccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCC
Q 010663 283 IGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLR 362 (505)
Q Consensus 283 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 362 (505)
+..+++|++|++++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 88899999999999999988888889999999999999999988899999999999999999999987777888899999
Q ss_pred EEeCcCCcCcccCCCCCccCccCcccccCCccCCCCC
Q 010663 363 ELNLSFNELEGEIPSGGIFANFTAESFMGNELLCGLP 399 (505)
Q Consensus 363 ~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 399 (505)
.|++++|++.+..+....+.......+.++...|..|
T Consensus 324 ~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 324 TLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp EEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred EEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999999998765433222333334556666677644
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.4e-38 Score=314.52 Aligned_cols=346 Identities=24% Similarity=0.372 Sum_probs=233.8
Q ss_pred hcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCC
Q 010663 13 FNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLA 92 (505)
Q Consensus 13 ~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 92 (505)
..+++|+.|+++++.+. .+|. +. .+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ ++++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 34567777777777776 5664 44 577777777777777643 33 7777777777777777775544 77777777
Q ss_pred EEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEE
Q 010663 93 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTL 172 (505)
Q Consensus 93 ~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 172 (505)
+|++++|.+++.+ .+..+++|++|++++|.+.+ ++ .+..+ ++|++|++. +.+.+. ..+..+++|++|
T Consensus 116 ~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~-~~-~~~~l-~~L~~L~l~-~~~~~~--~~~~~l~~L~~L 182 (466)
T 1o6v_A 116 GLTLFNNQITDID-------PLKNLTNLNRLELSSNTISD-IS-ALSGL-TSLQQLSFG-NQVTDL--KPLANLTTLERL 182 (466)
T ss_dssp EEECCSSCCCCCG-------GGTTCTTCSEEEEEEEEECC-CG-GGTTC-TTCSEEEEE-ESCCCC--GGGTTCTTCCEE
T ss_pred EEECCCCCCCCCh-------HHcCCCCCCEEECCCCccCC-Ch-hhccC-CcccEeecC-CcccCc--hhhccCCCCCEE
Confidence 7777777776653 26677777777777777664 33 35555 577777775 333322 226677777777
Q ss_pred EccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCC
Q 010663 173 VLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFT 252 (505)
Q Consensus 173 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 252 (505)
++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 7777777643 236677777777777777765544 55677777777777777642 24666777777777777776
Q ss_pred CCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCc
Q 010663 253 SVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFD 332 (505)
Q Consensus 253 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 332 (505)
+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+..+ ++.+++|+.|++++|++++..| +.
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 6543 6677777777777777765444 6667777777777777764433 6677777777777777776544 56
Q ss_pred CCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCccC
Q 010663 333 DLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNELL 395 (505)
Q Consensus 333 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~l 395 (505)
.+++|++|++++|.+++. ..+..+++|+.|++++|++++..| ...+..+..+.+.+|++.
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 677777777777777754 356677777777777777776666 344556666666666643
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.3e-38 Score=315.11 Aligned_cols=330 Identities=28% Similarity=0.402 Sum_probs=288.5
Q ss_pred cchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccC
Q 010663 8 VSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGN 87 (505)
Q Consensus 8 ~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 87 (505)
+| .+..+++|++|++++|.++ .+|. +. .+++|++|++++|.+++..+ ++++++|++|++++|.+++..+ +.+
T Consensus 61 l~-~~~~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 132 (466)
T 1o6v_A 61 ID-GVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKN 132 (466)
T ss_dssp CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cc-chhhhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcC
Confidence 45 4889999999999999998 6665 66 89999999999999985544 9999999999999999997543 899
Q ss_pred CCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCC
Q 010663 88 LRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLS 167 (505)
Q Consensus 88 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~ 167 (505)
+++|++|++++|.+.+.+ .+..+++|++|+++ +.+.+. + .+..+ ++|++|++++|.+.+. ..+..++
T Consensus 133 l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~-~~~~~~-~-~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~ 199 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDIS-------ALSGLTSLQQLSFG-NQVTDL-K-PLANL-TTLERLDISSNKVSDI--SVLAKLT 199 (466)
T ss_dssp CTTCSEEEEEEEEECCCG-------GGTTCTTCSEEEEE-ESCCCC-G-GGTTC-TTCCEEECCSSCCCCC--GGGGGCT
T ss_pred CCCCCEEECCCCccCCCh-------hhccCCcccEeecC-CcccCc-h-hhccC-CCCCEEECcCCcCCCC--hhhccCC
Confidence 999999999999998763 58899999999997 455533 2 36776 7999999999998743 4588999
Q ss_pred CCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceecc
Q 010663 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (505)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 247 (505)
+|++|++++|.+++..| ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 99999999999997655 78899999999999999864 468889999999999999986654 8899999999999
Q ss_pred CccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccC
Q 010663 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (505)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 327 (505)
+|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|++|++++|.+++.
T Consensus 274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred CCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence 999997644 8899999999999999987655 7899999999999999997665 78999999999999999865
Q ss_pred CccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCccc
Q 010663 328 PESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 328 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 578899999999999999998877 88999999999999999873
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-37 Score=310.00 Aligned_cols=336 Identities=19% Similarity=0.205 Sum_probs=271.6
Q ss_pred cccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcc
Q 010663 4 LVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPD 83 (505)
Q Consensus 4 ~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 83 (505)
..+..+..++++++|++|++++|.++ .+| .+. .+++|++|++++|.+++ +| ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred cCcccccChhHcCCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e-
Confidence 45566678999999999999999999 567 566 79999999999999986 44 89999999999999999975 3
Q ss_pred cccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccc
Q 010663 84 TIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAI 163 (505)
Q Consensus 84 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~ 163 (505)
++++++|++|++++|.+++.+ +..+++|++|++++|.+++. + +..+ ++|++|++++|...+.+ .+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l~--------~~~l~~L~~L~l~~N~l~~l-~--l~~l-~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKLD--------VSQNPLLTYLNCARNTLTEI-D--VSHN-TQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--------CTTCTTCCEEECTTSCCSCC-C--CTTC-TTCCEEECTTCSCCCCC--CC
T ss_pred -cCCCCcCCEEECCCCcCCeec--------CCCCCcCCEEECCCCcccee-c--cccC-CcCCEEECCCCCccccc--cc
Confidence 889999999999999998753 78899999999999999974 3 5666 78999999999766565 47
Q ss_pred cCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCc
Q 010663 164 SNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRF 243 (505)
Q Consensus 164 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 243 (505)
..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 889999999999999996 45 88999999999999999875 38899999999999999997 56 888999999
Q ss_pred eeccCccCCCCCCccccCCC-------CCCEEEccCCccccccccccccccCCCeeecccccccccCCcc--------cc
Q 010663 244 LYLGSNRFTSVIPSTFWRLK-------DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPAT--------IG 308 (505)
Q Consensus 244 L~l~~n~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~~ 308 (505)
|++++|++++..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.. ++
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 99999999987655554443 45666666676666665 467888999999999876666542 45
Q ss_pred CCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCcccc-------------CCCCCCEEeCcCCcCcccC
Q 010663 309 GLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSME-------------KLFYLRELNLSFNELEGEI 375 (505)
Q Consensus 309 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-------------~l~~L~~l~l~~n~l~~~~ 375 (505)
.+++|++|++++|++++. + ++.+++|+.|++++|++++. + .+. .+..|..+++++|+++|.+
T Consensus 316 ~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred hcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEc
Confidence 667888888888888873 3 78888888888888888862 2 111 1234556666667777666
Q ss_pred CCC
Q 010663 376 PSG 378 (505)
Q Consensus 376 p~~ 378 (505)
|..
T Consensus 391 p~~ 393 (457)
T 3bz5_A 391 SPD 393 (457)
T ss_dssp CTT
T ss_pred Chh
Confidence 643
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-37 Score=305.71 Aligned_cols=341 Identities=24% Similarity=0.311 Sum_probs=181.9
Q ss_pred CccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCC-------------CEEeccCCcccccCchhhhCCCCCC
Q 010663 2 NNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTV-------------EHLNLALNRFSGTIPSSITNASKLT 68 (505)
Q Consensus 2 n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L-------------~~L~l~~n~~~~~~~~~~~~l~~L~ 68 (505)
|++ |.+|.+++++++|++|++++|.+.|.+|..++ .+++| ++|++++|.+++ +|.. .++|+
T Consensus 21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~ 94 (454)
T 1jl5_A 21 SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLE 94 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCS
T ss_pred Cch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCC
Confidence 667 89999999999999999999999999999887 67654 888888888774 4432 36778
Q ss_pred EEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEE
Q 010663 69 LLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETL 148 (505)
Q Consensus 69 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L 148 (505)
+|++++|.+++ +|.. +++|++|++++|.+++.+. + .++|++|++++|.+++ +| .+..+ ++|++|
T Consensus 95 ~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-------~--~~~L~~L~L~~n~l~~-lp-~~~~l-~~L~~L 158 (454)
T 1jl5_A 95 SLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-------L--PPLLEYLGVSNNQLEK-LP-ELQNS-SFLKII 158 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-------C--CTTCCEEECCSSCCSS-CC-CCTTC-TTCCEE
T ss_pred EEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-------C--CCCCCEEECcCCCCCC-Cc-ccCCC-CCCCEE
Confidence 88888887776 4543 3566777777666665431 0 1455566666665553 44 34444 455566
Q ss_pred EeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccc
Q 010663 149 GIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFS 228 (505)
Q Consensus 149 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 228 (505)
++++|.+++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++++|.+.
T Consensus 159 ~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 159 DVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE 228 (454)
T ss_dssp ECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred ECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC
Confidence 665555553 33322 355555555555553 33 35555555555555555543 2221 134555555555554
Q ss_pred cccCccccCCCCCCceeccCccCCCCCCccc-----------------cCCCCCCEEEccCCccccccccccccccCCCe
Q 010663 229 GSIPSCLSNLTSLRFLYLGSNRFTSVIPSTF-----------------WRLKDILFLDFSSNLLVGTLSFDIGNLKVLLG 291 (505)
Q Consensus 229 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 291 (505)
.+|. +..+++|+.|++++|++++ +|..+ ..+++|+.|++++|.+.+... -.++|++
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~----~~~~L~~ 301 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE----LPPNLYY 301 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC----CCTTCCE
T ss_pred -cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccC----cCCcCCE
Confidence 3442 4455555555555555443 22111 012344444444444443110 0134444
Q ss_pred eecccccccccCCccccCC-CCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCc
Q 010663 292 INLSENNLSGDMPATIGGL-KSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNE 370 (505)
Q Consensus 292 L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~ 370 (505)
|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|+.|++++|+
T Consensus 302 L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 302 LNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp EECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred EECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCC
Confidence 5555554442 11 22 478888888888875 5543 477888888888887 4555 46788888888888
Q ss_pred Ccc--cCCCC-Ccc-------------CccCcccccCCcc
Q 010663 371 LEG--EIPSG-GIF-------------ANFTAESFMGNEL 394 (505)
Q Consensus 371 l~~--~~p~~-~~~-------------~~~~~~~~~~n~~ 394 (505)
+++ .+|.. ..+ .+++.+++.+|+.
T Consensus 369 l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CSSCCCCCTTCCEEECCC----------------------
T ss_pred CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 887 66643 112 4456666666663
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-36 Score=288.95 Aligned_cols=255 Identities=32% Similarity=0.541 Sum_probs=207.8
Q ss_pred cccEEEeecCCccc--cCCccccCCCCCCEEEccC-CccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeE
Q 010663 144 SLETLGIANCSISG--NIPPAISNLSNLLTLVLEG-NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKL 220 (505)
Q Consensus 144 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 220 (505)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|+.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 56667777777766 6666777777777777774 66766677777777777777777777776777777777777777
Q ss_pred eccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCC-CCCEEEccCCccccccccccccccCCCeeecccccc
Q 010663 221 VLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLK-DILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNL 299 (505)
Q Consensus 221 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 299 (505)
++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 7777777777777777777777777777777777777777776 788888888888777777777776 88899999998
Q ss_pred cccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCC
Q 010663 300 SGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGG 379 (505)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~ 379 (505)
++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888899999999999999999876665 7889999999999999999999999999999999999999999999988
Q ss_pred ccCccCcccccCCccCCCCCC
Q 010663 380 IFANFTAESFMGNELLCGLPN 400 (505)
Q Consensus 380 ~~~~~~~~~~~~n~~lc~~~~ 400 (505)
.+.++..+++.+|+++|+.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 888999999999999999763
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-36 Score=294.27 Aligned_cols=335 Identities=18% Similarity=0.206 Sum_probs=246.6
Q ss_pred CCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCC
Q 010663 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (505)
Q Consensus 39 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~ 118 (505)
.++++++|+++++.++..-+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+.+. ..+.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCC
Confidence 35677777777777764333446677777777777777776666677777777777777777776632 4566777
Q ss_pred CCCEEECcCCCCCccCchH-HhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEe
Q 010663 119 KLRSLNFIGNPLDGFLPSS-IGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLF 197 (505)
Q Consensus 119 ~L~~L~l~~n~~~~~~~~~-~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 197 (505)
+|++|++++|.++ .+|.. +..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|+
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred CCCEEECCCCccC-cCCHHHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 7777777777777 34433 4555 6777777777777766666777788888888888877753 255677888888
Q ss_pred ccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccc
Q 010663 198 LAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277 (505)
Q Consensus 198 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 277 (505)
+++|.+.+. ...++|++|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 193 l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred ccccccccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 888777642 2345788888888887744 33 2347888899998888864 577888999999999999988
Q ss_pred ccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccC
Q 010663 278 TLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEK 357 (505)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 357 (505)
..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence 888888889999999999999884 5666778899999999999988 5677788889999999999999854 3 677
Q ss_pred CCCCCEEeCcCCcCcccCCCCCccCccCcccccCCccCCCCC
Q 010663 358 LFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNELLCGLP 399 (505)
Q Consensus 358 l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 399 (505)
+++|+.|++++|++.+.... ..+..+....+.+++..|..+
T Consensus 338 ~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp TCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred hccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 88999999999998764321 223444455566666666643
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-35 Score=286.94 Aligned_cols=304 Identities=24% Similarity=0.384 Sum_probs=165.8
Q ss_pred CCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCC
Q 010663 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (505)
Q Consensus 40 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~ 119 (505)
+++|++|+++++.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++.. ..+..+++
T Consensus 43 l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-------~~~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-------SALQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-------GGGTTCTT
T ss_pred cccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-------hHHcCCCc
Confidence 344444444444443 222 24444444444444444443221 44444444444444444432 12444444
Q ss_pred CCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEecc
Q 010663 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199 (505)
Q Consensus 120 L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 199 (505)
|++|++++|.+.+. +. +..+ ++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l-~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANL-TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTC-TTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccCc-hh-hccC-CceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 44444444444422 21 3333 34555555544333222 224455555555555555543222 4455555555555
Q ss_pred CccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccccc
Q 010663 200 FNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (505)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (505)
+|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 555543222 4455555666666555553322 4555666666666666654332 55666666666666666543
Q ss_pred ccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCC
Q 010663 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (505)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 359 (505)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 2456667777777777776643 346677788888888888877777777778888888888888876555 67778
Q ss_pred CCCEEeCcCCcCc
Q 010663 360 YLRELNLSFNELE 372 (505)
Q Consensus 360 ~L~~l~l~~n~l~ 372 (505)
+|+.+++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 8888888888764
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-35 Score=285.82 Aligned_cols=308 Identities=27% Similarity=0.406 Sum_probs=262.8
Q ss_pred hhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCC
Q 010663 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (505)
Q Consensus 11 ~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 90 (505)
.+..+++|++|+++++.+. .+|. +. .+++|++|++++|.+++ ++. +.++++|++|++++|.+++. +.+.++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 4668899999999999998 7775 55 69999999999999984 444 99999999999999999863 35899999
Q ss_pred CCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCC
Q 010663 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (505)
Q Consensus 91 L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 170 (505)
|++|++++|.+...+ .+..+++|++|++++|.....++. +..+ ++|++|++++|.+.+..+ +..+++|+
T Consensus 112 L~~L~l~~n~i~~~~-------~~~~l~~L~~L~l~~n~~~~~~~~-~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 112 LRELYLNEDNISDIS-------PLANLTKMYSLNLGANHNLSDLSP-LSNM-TGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp CSEEECTTSCCCCCG-------GGTTCTTCCEEECTTCTTCCCCGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred CCEEECcCCcccCch-------hhccCCceeEEECCCCCCcccccc-hhhC-CCCcEEEecCCCcCCchh--hccCCCCC
Confidence 999999999998774 378899999999999976655444 6676 789999999999875433 88999999
Q ss_pred EEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCcc
Q 010663 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250 (505)
Q Consensus 171 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 250 (505)
+|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 181 SLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 999999999854 33 8899999999999999886544 7889999999999999985443 8889999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCcc
Q 010663 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330 (505)
Q Consensus 251 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 330 (505)
+++. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..++.+++|++|++++|++++..|
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 9874 5688899999999999999865 357889999999999999998888889999999999999999997665
Q ss_pred CcCCCCCCEEECcCCcCc
Q 010663 331 FDDLTSLEVMNLSNNKIS 348 (505)
Q Consensus 331 ~~~l~~L~~L~l~~n~l~ 348 (505)
+..+++|++|++++|.++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 788999999999999886
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-35 Score=291.04 Aligned_cols=312 Identities=21% Similarity=0.215 Sum_probs=275.5
Q ss_pred cCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCE
Q 010663 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (505)
Q Consensus 14 ~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 93 (505)
.++++++|+++++.++ .+|..+...+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..|+++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 5689999999999998 888886558999999999999999777789999999999999999999988888999999999
Q ss_pred EeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEE
Q 010663 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (505)
Q Consensus 94 L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 173 (505)
|++++|.++..+. ..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+++. .+..+++|++|+
T Consensus 122 L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 122 LVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp EECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred EECCCCccCcCCH-----HHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCcc---ccccccccceee
Confidence 9999999998863 346899999999999999998778778887 7999999999999854 366789999999
Q ss_pred ccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCC
Q 010663 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (505)
Q Consensus 174 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 253 (505)
+++|.+++ +...++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 99998874 3345789999999999986533 2357999999999999864 568899999999999999999
Q ss_pred CCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcC
Q 010663 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (505)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 333 (505)
..|..+..+++|+.|++++|++.+ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|+++.. + +..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~ 337 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 337 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence 989999999999999999999985 4556678999999999999998 6777788899999999999999854 3 678
Q ss_pred CCCCCEEECcCCcCccc
Q 010663 334 LTSLEVMNLSNNKISGS 350 (505)
Q Consensus 334 l~~L~~L~l~~n~l~~~ 350 (505)
+++|+.|++++|++...
T Consensus 338 ~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred hccCCEEEcCCCCccch
Confidence 89999999999999864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-36 Score=308.38 Aligned_cols=335 Identities=17% Similarity=0.196 Sum_probs=266.3
Q ss_pred CCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCC
Q 010663 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (505)
Q Consensus 39 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~ 118 (505)
.+.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|++|+|++|.+++.++ ..+.+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCC
Confidence 36778888888888875555567788888888888888887777788888888888888888887743 4567888
Q ss_pred CCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEec
Q 010663 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFL 198 (505)
Q Consensus 119 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 198 (505)
+|++|++++|.+++..+..+..+ ++|++|++++|.+.+..|..|..+++|++|++++|.+++. .++.+++|+.|++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 88888888888884444445666 6888888888888877777888888888888888888754 2556788888888
Q ss_pred cCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccc
Q 010663 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278 (505)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 278 (505)
++|.+.+. ...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 200 ~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 200 SYNLLSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred ccCccccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC
Confidence 88877643 3446788999999888744332 2 36899999999998873 6788899999999999999988
Q ss_pred cccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCC
Q 010663 279 LSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL 358 (505)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 358 (505)
.|..+..+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+++. | +..+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhc
Confidence 88899999999999999999985 5667778999999999999998 6777788899999999999999854 3 6678
Q ss_pred CCCCEEeCcCCcCcccCCCCCccCccCcccccCCccCCCC
Q 010663 359 FYLRELNLSFNELEGEIPSGGIFANFTAESFMGNELLCGL 398 (505)
Q Consensus 359 ~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 398 (505)
++|+.|++++|++.+..+. ..+..+....+.++...|+.
T Consensus 345 ~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 8999999999999876432 23445555567778878875
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-35 Score=307.19 Aligned_cols=368 Identities=21% Similarity=0.233 Sum_probs=278.7
Q ss_pred CCccccccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc
Q 010663 1 MNNLVGMVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL 80 (505)
Q Consensus 1 ~n~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 80 (505)
+|++++..|.+|.++++|++|+|++|.++ .+|...+..+++|++|++++|++++..+..|+++++|++|++++|.+++.
T Consensus 85 ~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 85 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 47888888889999999999999999999 67766544899999999999999976667899999999999999999864
Q ss_pred -CcccccCCCCCCEEeccCccccCCCCCcccccccCCCCC----CCEEECcCCCCCccCc--------------------
Q 010663 81 -IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK----LRSLNFIGNPLDGFLP-------------------- 135 (505)
Q Consensus 81 -~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~----L~~L~l~~n~~~~~~~-------------------- 135 (505)
.|..++.+++|++|++++|.+++.+. ..+..+++ +..++++.|.+....+
T Consensus 164 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 164 KLPEYFSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECG-----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSH
T ss_pred CCchhhccchhhhhhcccCcccccccc-----ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccc
Confidence 67888999999999999999877631 11111111 1122222222211000
Q ss_pred -------------------------------------------------------------h------------------
Q 010663 136 -------------------------------------------------------------S------------------ 136 (505)
Q Consensus 136 -------------------------------------------------------------~------------------ 136 (505)
.
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 0
Q ss_pred ----HHhhccccccEEEeecCCccccCCc-------------------cccCCCCCCEEEccCCcccc--ccCccccCCC
Q 010663 137 ----SIGNLSKSLETLGIANCSISGNIPP-------------------AISNLSNLLTLVLEGNKLTG--PIPTTFGRLQ 191 (505)
Q Consensus 137 ----~~~~l~~~L~~L~l~~n~l~~~~~~-------------------~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~ 191 (505)
.+... ..|+.|++.+|.+....+. ....+++|+.++++.|.+.. ..+..+..+.
T Consensus 319 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 397 (635)
T 4g8a_A 319 ERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI 397 (635)
T ss_dssp EECGGGGSC-CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS
T ss_pred ccccccccc-hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhh
Confidence 00000 2344455554443321111 11234555566666555532 2333444555
Q ss_pred CCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccC-ccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEc
Q 010663 192 KLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270 (505)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 270 (505)
+|+++++..+.... .+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+..+..+..++.++.|++
T Consensus 398 ~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 398 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 66666666665543 34557788999999999888775544 45788999999999999999999999999999999999
Q ss_pred cCCccc-cccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcc
Q 010663 271 SSNLLV-GTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISG 349 (505)
Q Consensus 271 ~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 349 (505)
++|... +..|..+..+++|++|++++|++++..|..|+++++|++|+|++|++++..|..+..+++|++|++++|++++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 999754 4577889999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCccccCC-CCCCEEeCcCCcCcccCC
Q 010663 350 SIPKSMEKL-FYLRELNLSFNELEGEIP 376 (505)
Q Consensus 350 ~~p~~l~~l-~~L~~l~l~~n~l~~~~p 376 (505)
..|..+..+ ++|+.|++++|++.+...
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999988 689999999999987654
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-35 Score=303.63 Aligned_cols=312 Identities=21% Similarity=0.216 Sum_probs=277.5
Q ss_pred cCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCE
Q 010663 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (505)
Q Consensus 14 ~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 93 (505)
.+++++.++++++.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4688999999999998 788876558999999999999999888889999999999999999999998888999999999
Q ss_pred EeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEE
Q 010663 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (505)
Q Consensus 94 L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 173 (505)
|+|++|.++..|. ..+.++++|++|++++|.+.+..|..+..+ ++|++|++++|.+++. .+..+++|+.|+
T Consensus 128 L~L~~n~l~~l~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~---~~~~l~~L~~L~ 198 (597)
T 3oja_B 128 LVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHAN 198 (597)
T ss_dssp EECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBC---CGGGCTTCSEEE
T ss_pred EEeeCCCCCCCCH-----HHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCc---Chhhhhhhhhhh
Confidence 9999999998863 446899999999999999998888888887 7999999999999864 256789999999
Q ss_pred ccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCC
Q 010663 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (505)
Q Consensus 174 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 253 (505)
+++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred cccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 99998874 345678999999999997654432 3689999999999986 3678999999999999999999
Q ss_pred CCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcC
Q 010663 254 VIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD 333 (505)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 333 (505)
..|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. + +..
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~ 343 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 343 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence 999999999999999999999986 4666778999999999999998 6888889999999999999999854 3 677
Q ss_pred CCCCCEEECcCCcCccc
Q 010663 334 LTSLEVMNLSNNKISGS 350 (505)
Q Consensus 334 l~~L~~L~l~~n~l~~~ 350 (505)
+++|+.|++++|.+.+.
T Consensus 344 ~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred cCCCCEEEeeCCCCCCh
Confidence 89999999999999864
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-34 Score=287.24 Aligned_cols=311 Identities=21% Similarity=0.201 Sum_probs=266.4
Q ss_pred ccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCC
Q 010663 26 NSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSST 105 (505)
Q Consensus 26 n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 105 (505)
....+..+..+. .+++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++.+
T Consensus 28 ~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 28 FEMQATDTISEE-QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp TTCCTTSEEEHH-HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred cCcCcccccChh-HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee
Confidence 334445556677 79999999999999985 46 799999999999999999975 4 899999999999999998763
Q ss_pred CCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCc
Q 010663 106 SKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPT 185 (505)
Q Consensus 106 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 185 (505)
+.++++|++|++++|.+++ +| +..+ ++|++|++++|.+++. + ++.+++|++|++++|...+.+
T Consensus 102 --------~~~l~~L~~L~L~~N~l~~-l~--~~~l-~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 102 --------VTPLTKLTYLNCDTNKLTK-LD--VSQN-PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp --------CTTCTTCCEEECCSSCCSC-CC--CTTC-TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--
T ss_pred --------cCCCCcCCEEECCCCcCCe-ec--CCCC-CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--
Confidence 7789999999999999986 44 6676 7899999999999864 3 889999999999999766555
Q ss_pred cccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCC
Q 010663 186 TFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDI 265 (505)
Q Consensus 186 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 265 (505)
.++.+++|++|++++|.+++ +| +..+++|+.|++++|++++. .++.+++|+.|++++|++++ +| +..+++|
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 48899999999999999987 44 88999999999999999965 38889999999999999998 45 7889999
Q ss_pred CEEEccCCcccccccccccccc-------CCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCc--------c
Q 010663 266 LFLDFSSNLLVGTLSFDIGNLK-------VLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPE--------S 330 (505)
Q Consensus 266 ~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~ 330 (505)
+.|++++|++.+..+..+..++ +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 9999999999987665555554 56778888888777776 57889999999999987776654 3
Q ss_pred CcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcc
Q 010663 331 FDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (505)
Q Consensus 331 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 373 (505)
+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 314 l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 56778999999999999984 3 8899999999999999987
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-35 Score=290.77 Aligned_cols=334 Identities=26% Similarity=0.319 Sum_probs=240.5
Q ss_pred hcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCC-------------CEEEccCCcCCc
Q 010663 13 FNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKL-------------TLLELGGNTFSG 79 (505)
Q Consensus 13 ~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~ 79 (505)
.+.++|++|++++|.+ |++|++++ ++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccccchhhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3568999999999999 69999998 89999999999999999999999998864 999999999986
Q ss_pred cCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccC
Q 010663 80 LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNI 159 (505)
Q Consensus 80 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 159 (505)
+|.. .++|++|++++|.+++.|. . +++|++|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 86 -lp~~---~~~L~~L~l~~n~l~~lp~------~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 86 -LPEL---PPHLESLVASCNSLTELPE------L---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp -CCSC---CTTCSEEECCSSCCSSCCC------C---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-C
T ss_pred -CCCC---cCCCCEEEccCCcCCcccc------c---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-C
Confidence 3442 4789999999999998762 2 3789999999999985 332 23689999999999995 7
Q ss_pred CccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCC
Q 010663 160 PPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLT 239 (505)
Q Consensus 160 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 239 (505)
| .++.+++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .+
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cC
Confidence 7 69999999999999999985 66543 599999999999987 56 68999999999999999985 5543 35
Q ss_pred CCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCc
Q 010663 240 SLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLA 319 (505)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 319 (505)
+|+.|++++|.+. .+| .+..+++|++|++++|++.+ +|. .+++|++|++++|++++ +|.. +++|++|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 8999999999998 566 48899999999999999986 333 24788888888888874 5543 3667777777
Q ss_pred Cccccc--cCCccC-------------cCC-CCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCCccCc
Q 010663 320 YNRLEG--QIPESF-------------DDL-TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFAN 383 (505)
Q Consensus 320 ~n~l~~--~~~~~~-------------~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~ 383 (505)
+|.+++ .+|..+ ..+ ++|++|++++|++++ +|.. +++|+.|++++|.++ .+|. .+.+
T Consensus 286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~ 358 (454)
T 1jl5_A 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQN 358 (454)
T ss_dssp SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTT
T ss_pred CCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--hhhh
Confidence 777765 222111 112 467777777777764 4443 467778888888776 4555 4566
Q ss_pred cCcccccCCccC
Q 010663 384 FTAESFMGNELL 395 (505)
Q Consensus 384 ~~~~~~~~n~~l 395 (505)
++.+++.+|...
T Consensus 359 L~~L~L~~N~l~ 370 (454)
T 1jl5_A 359 LKQLHVEYNPLR 370 (454)
T ss_dssp CCEEECCSSCCS
T ss_pred ccEEECCCCCCC
Confidence 777777777643
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-35 Score=277.85 Aligned_cols=250 Identities=31% Similarity=0.493 Sum_probs=214.6
Q ss_pred CCCCEEECcCCCCCc--cCchHHhhccccccEEEeec-CCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCC
Q 010663 118 KKLRSLNFIGNPLDG--FLPSSIGNLSKSLETLGIAN-CSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQ 194 (505)
Q Consensus 118 ~~L~~L~l~~n~~~~--~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 194 (505)
.+++.|++++|.+.+ .+|..+..+ ++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467788888888887 778888887 6888888884 888888888888888888888888888888888888888888
Q ss_pred eEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCC-CCCceeccCccCCCCCCccccCCCCCCEEEccCC
Q 010663 195 GLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLT-SLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSN 273 (505)
Q Consensus 195 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 273 (505)
+|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888888888888888888888888888888888888887 888888888888888888888877 888999998
Q ss_pred ccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCc
Q 010663 274 LLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPK 353 (505)
Q Consensus 274 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 353 (505)
.+.+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 88888888888889999999999988866665 77889999999999999988999999999999999999999998887
Q ss_pred cccCCCCCCEEeCcCCcC
Q 010663 354 SMEKLFYLRELNLSFNEL 371 (505)
Q Consensus 354 ~l~~l~~L~~l~l~~n~l 371 (505)
. ..+++|+.+++++|+.
T Consensus 287 ~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp S-TTGGGSCGGGTCSSSE
T ss_pred C-ccccccChHHhcCCCC
Confidence 6 7888999999999984
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-33 Score=271.07 Aligned_cols=288 Identities=25% Similarity=0.265 Sum_probs=171.6
Q ss_pred CCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEec
Q 010663 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (505)
Q Consensus 17 ~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 96 (505)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555554 4454332 34555555555554444444555555555555555555444444555555555555
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccC
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
++|.++..| ..+. ++|++|++++|.+....+..+..+++|++|++++
T Consensus 110 ~~n~l~~l~------------------------------~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 110 SKNHLVEIP------------------------------PNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CSSCCCSCC------------------------------SSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred CCCcCCccC------------------------------cccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 555444433 2222 3455555555555544444455566666666666
Q ss_pred Cccc--cccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCC
Q 010663 177 NKLT--GPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV 254 (505)
Q Consensus 177 n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 254 (505)
|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 6654 2445555555 66666666666654 343332 5667777777777666556667777777777777777766
Q ss_pred CCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccC------CCCCcEEeCcCcccc--cc
Q 010663 255 IPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGG------LKSLQIMDLAYNRLE--GQ 326 (505)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L~l~~n~l~--~~ 326 (505)
.+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..+.. ...|+.|++++|++. +.
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 6666777777777777777776 55666777777777777777777555555543 356888889888876 56
Q ss_pred CCccCcCCCCCCEEECcCCc
Q 010663 327 IPESFDDLTSLEVMNLSNNK 346 (505)
Q Consensus 327 ~~~~~~~l~~L~~L~l~~n~ 346 (505)
.|..+..+++|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 67788888899999988875
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-33 Score=270.77 Aligned_cols=288 Identities=21% Similarity=0.294 Sum_probs=240.0
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccc
Q 010663 66 KLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL 145 (505)
Q Consensus 66 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L 145 (505)
+++.++++++.++ .+|..+ .++|+.|++++|.+...+. ..+.++++|++|++++|.+++..|..+..+ ++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRK-----DDFKGLQHLYALVLVNNKISKIHEKAFSPL-RKL 104 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECGGGSTTC-TTC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCH-----hHhhCCCCCcEEECCCCccCccCHhHhhCc-CCC
Confidence 5667777777666 345444 2577777777777776632 457778888888888888887777777777 688
Q ss_pred cEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCcccc--ccCCccCCCCCCCCeEecc
Q 010663 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV--GSCPDELCHLDRLDKLVLL 223 (505)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~ 223 (505)
++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+ +|++|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 88899888887 5666554 89999999999999777777999999999999999996 3677788888 99999999
Q ss_pred CcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccC
Q 010663 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (505)
Q Consensus 224 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 303 (505)
+|++++ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 999985 665544 79999999999999988899999999999999999999888888999999999999999998 88
Q ss_pred CccccCCCCCcEEeCcCccccccCCccCcC------CCCCCEEECcCCcCc--ccCCccccCCCCCCEEeCcCCc
Q 010663 304 PATIGGLKSLQIMDLAYNRLEGQIPESFDD------LTSLEVMNLSNNKIS--GSIPKSMEKLFYLRELNLSFNE 370 (505)
Q Consensus 304 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~l~l~~n~ 370 (505)
|..+..+++|++|++++|++++..+..+.. .+.|+.|++++|.+. +..|..+..++.|+.+++++|.
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888999999999999999999877776665 367999999999987 6778889999999999999885
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.4e-33 Score=267.38 Aligned_cols=295 Identities=22% Similarity=0.225 Sum_probs=171.1
Q ss_pred CCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEec
Q 010663 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (505)
Q Consensus 17 ~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 96 (505)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5677777777776 6666543 56777777777777555556777777777777777777666777777777777777
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccc--cCCccccCCCCCCEEEc
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISG--NIPPAISNLSNLLTLVL 174 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l 174 (505)
++|.++..|. .+. ++|++|++++|.+.+..+..+..+ ++|++|++++|.+.. ..+..+..+++|++|++
T Consensus 108 s~n~l~~l~~------~~~--~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 108 SKNQLKELPE------KMP--KTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CSSCCSBCCS------SCC--TTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCcCCccCh------hhc--ccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 7777766542 221 566777777776665555555555 566666666666642 44555666666666666
Q ss_pred cCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCC
Q 010663 175 EGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV 254 (505)
Q Consensus 175 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 254 (505)
++|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .
T Consensus 179 ~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 179 ADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp CSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred CCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 6666652 333322 45555555555555555555555555555555555555444444555555555555555554 3
Q ss_pred CCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccc--cCCccCc
Q 010663 255 IPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEG--QIPESFD 332 (505)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 332 (505)
+|..+..+++|++|++++|++++..+..+.... .......++.|++++|++.. ..|..+.
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccc
Confidence 344444444455555554444433322221110 00123566777777777643 4456677
Q ss_pred CCCCCCEEECcCCc
Q 010663 333 DLTSLEVMNLSNNK 346 (505)
Q Consensus 333 ~l~~L~~L~l~~n~ 346 (505)
.+.+++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 77777777777764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.7e-32 Score=262.47 Aligned_cols=288 Identities=22% Similarity=0.273 Sum_probs=174.6
Q ss_pred CCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCC-CCCcccccccCCCCCC
Q 010663 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSSLANCKKL 120 (505)
Q Consensus 42 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~l~~L 120 (505)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++. | ..+.++++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------GAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------TTTTTCTTC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH------HHhcCCCCC
Confidence 5667777666665 4554432 4666677777766666555666666666666666666655 3 455666666
Q ss_pred CEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCcccc--ccCccccCCCCCCeEec
Q 010663 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTG--PIPTTFGRLQKLQGLFL 198 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l 198 (505)
++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 66666666665 3443322 345555555555554444445555555555555555532 33344444444444444
Q ss_pred cCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccc
Q 010663 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGT 278 (505)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 278 (505)
++| .++ .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 179 ~~n------------------------~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 179 ADT------------------------NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CSS------------------------CCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCC------------------------ccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 444 444 2232222 4555556655555555555555666666666666666555
Q ss_pred cccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcC------CCCCCEEECcCCcCcc--c
Q 010663 279 LSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDD------LTSLEVMNLSNNKISG--S 350 (505)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~ 350 (505)
.+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. .
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc
Confidence 5555666667777777777766 66666777777888888888777665555543 3778899999998863 5
Q ss_pred CCccccCCCCCCEEeCcCCc
Q 010663 351 IPKSMEKLFYLRELNLSFNE 370 (505)
Q Consensus 351 ~p~~l~~l~~L~~l~l~~n~ 370 (505)
.|..+..+..++.+++++|+
T Consensus 311 ~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGGTTCCCGGGEEC----
T ss_pred CccccccccceeEEEecccC
Confidence 56788888999999999884
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.5e-36 Score=304.84 Aligned_cols=359 Identities=18% Similarity=0.151 Sum_probs=273.4
Q ss_pred CCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccc----cCchhhhCCCCCCEEEccCCcCCccCccccc-CCC
Q 010663 15 MSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSG----TIPSSITNASKLTLLELGGNTFSGLIPDTIG-NLR 89 (505)
Q Consensus 15 l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~ 89 (505)
.++|++|+++++.++......+...+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35688999999988754444433378999999999998874 4567788889999999999988765443333 355
Q ss_pred ----CCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhc----cccccEEEeecCCcccc---
Q 010663 90 ----NLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNL----SKSLETLGIANCSISGN--- 158 (505)
Q Consensus 90 ----~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l----~~~L~~L~l~~n~l~~~--- 158 (505)
+|++|++++|.++... ...+...+..+++|++|++++|.+++..+..+... .++|++|++++|.+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHH-HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 6999999999887421 00112667889999999999999876555555442 13699999999988763
Q ss_pred -CCccccCCCCCCEEEccCCccccccCcccc-----CCCCCCeEeccCcccccc----CCccCCCCCCCCeEeccCcccc
Q 010663 159 -IPPAISNLSNLLTLVLEGNKLTGPIPTTFG-----RLQKLQGLFLAFNKLVGS----CPDELCHLDRLDKLVLLGNKFS 228 (505)
Q Consensus 159 -~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 228 (505)
++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 355667789999999999998765444443 366999999999988764 4666778899999999999887
Q ss_pred ccc-----CccccCCCCCCceeccCccCCCC----CCccccCCCCCCEEEccCCcccccccccccc-----ccCCCeeec
Q 010663 229 GSI-----PSCLSNLTSLRFLYLGSNRFTSV----IPSTFWRLKDILFLDFSSNLLVGTLSFDIGN-----LKVLLGINL 294 (505)
Q Consensus 229 ~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l 294 (505)
+.. +..+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 532 22334678999999999988864 5666777899999999999887554444433 268999999
Q ss_pred cccccccc----CCccccCCCCCcEEeCcCccccccCCccCcC-----CCCCCEEECcCCcCcc----cCCccccCCCCC
Q 010663 295 SENNLSGD----MPATIGGLKSLQIMDLAYNRLEGQIPESFDD-----LTSLEVMNLSNNKISG----SIPKSMEKLFYL 361 (505)
Q Consensus 295 ~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~L 361 (505)
++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99998865 4666778899999999999988665444432 6799999999999986 778888889999
Q ss_pred CEEeCcCCcCccc
Q 010663 362 RELNLSFNELEGE 374 (505)
Q Consensus 362 ~~l~l~~n~l~~~ 374 (505)
++|++++|++++.
T Consensus 401 ~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 401 RELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSSCCHH
T ss_pred cEEECCCCCCCHH
Confidence 9999999988643
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.4e-35 Score=294.94 Aligned_cols=368 Identities=19% Similarity=0.157 Sum_probs=285.9
Q ss_pred Cccccccchh-hhcCCCCcEEEcccccccc----cCchhhhcCCCCCCEEeccCCcccccCchhhh-CCC----CCCEEE
Q 010663 2 NNLVGMVSAT-IFNMSTLKIIILINNSLSG----SLPSRIGLSLPTVEHLNLALNRFSGTIPSSIT-NAS----KLTLLE 71 (505)
Q Consensus 2 n~~~~~~~~~-~~~l~~L~~L~ls~n~~~~----~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~----~L~~L~ 71 (505)
|+++...... +..+++|++|++++|.+++ .++..+. .+++|++|++++|.++...+..+. .+. +|++|+
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 4455443333 8899999999999999875 4566676 789999999999999865554443 455 799999
Q ss_pred ccCCcCCc----cCcccccCCCCCCEEeccCccccCC-CCCcccccc-cCCCCCCCEEECcCCCCCccC----chHHhhc
Q 010663 72 LGGNTFSG----LIPDTIGNLRNLAWLGLAYNNLTSS-TSKLSFLSS-LANCKKLRSLNFIGNPLDGFL----PSSIGNL 141 (505)
Q Consensus 72 l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~----~~~~~~l 141 (505)
+++|.+++ .++..+..+++|++|++++|.+... +.. +... ....++|++|++++|.+++.. +..+..+
T Consensus 92 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 92 LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL--LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169 (461)
T ss_dssp CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH--HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred ccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH--HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence 99999985 4588899999999999999998754 100 0011 234678999999999998644 4555555
Q ss_pred cccccEEEeecCCccccCCcccc-----CCCCCCEEEccCCccccc----cCccccCCCCCCeEeccCccccccC-----
Q 010663 142 SKSLETLGIANCSISGNIPPAIS-----NLSNLLTLVLEGNKLTGP----IPTTFGRLQKLQGLFLAFNKLVGSC----- 207 (505)
Q Consensus 142 ~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----- 207 (505)
++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 170 -~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 170 -PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp -TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred -CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 6899999999998765444443 367999999999999863 5777888999999999999987542
Q ss_pred CccCCCCCCCCeEeccCcccccc----cCccccCCCCCCceeccCccCCCCCCccccC-----CCCCCEEEccCCccccc
Q 010663 208 PDELCHLDRLDKLVLLGNKFSGS----IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR-----LKDILFLDFSSNLLVGT 278 (505)
Q Consensus 208 ~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~ 278 (505)
+..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+.+.
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 22334689999999999999864 6777888999999999999987654444432 37999999999999865
Q ss_pred ----cccccccccCCCeeecccccccccCCccccC-----CCCCcEEeCcCccccc----cCCccCcCCCCCCEEECcCC
Q 010663 279 ----LSFDIGNLKVLLGINLSENNLSGDMPATIGG-----LKSLQIMDLAYNRLEG----QIPESFDDLTSLEVMNLSNN 345 (505)
Q Consensus 279 ----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n 345 (505)
++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 4555677899999999999998765554442 6799999999999986 67888888999999999999
Q ss_pred cCcccCCccc-----cCCCCCCEEeCcCCcCcc
Q 010663 346 KISGSIPKSM-----EKLFYLRELNLSFNELEG 373 (505)
Q Consensus 346 ~l~~~~p~~l-----~~l~~L~~l~l~~n~l~~ 373 (505)
++++.-...+ .....|+.|++.++.+..
T Consensus 409 ~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 409 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 9986422221 124468888888877654
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-30 Score=247.09 Aligned_cols=279 Identities=21% Similarity=0.226 Sum_probs=188.0
Q ss_pred cEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCcc--CcccccCCCCCCEEec
Q 010663 19 KIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGL--IPDTIGNLRNLAWLGL 96 (505)
Q Consensus 19 ~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~L 96 (505)
+.++.+++.++ ++|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56788888887 7887543 5788888888888743334567888888888888887733 3556667888888888
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCc-hHHhhccccccEEEeecCCccccCCccccCCCCCCEEEcc
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLE 175 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 175 (505)
++|.+...+ ..+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 86 s~n~i~~l~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 86 SFNGVITMS------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CSCSEEEEE------EEEETCTTCCEEECTTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCCccccCh------hhcCCCCCCCEEECCCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 888777655 456777888888888887764433 345555 567777777777776666667777777777777
Q ss_pred CCcccc-ccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCC
Q 010663 176 GNKLTG-PIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV 254 (505)
Q Consensus 176 ~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 254 (505)
+|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 777765 4666677777777777777777766666777777777777777777765555666677777777777777766
Q ss_pred CCccccCCC-CCCEEEccCCccccccc--cccccccCCCeeecccccccccCCcccc
Q 010663 255 IPSTFWRLK-DILFLDFSSNLLVGTLS--FDIGNLKVLLGINLSENNLSGDMPATIG 308 (505)
Q Consensus 255 ~~~~~~~~~-~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 308 (505)
.+..+..++ +|++|++++|.+.+... .....+...+.+.+..+.+....|..+.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred CHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 666666663 67777777776654321 1112233333444444444444444443
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6.5e-30 Score=243.55 Aligned_cols=224 Identities=22% Similarity=0.274 Sum_probs=142.6
Q ss_pred CCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEe
Q 010663 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLG 95 (505)
Q Consensus 16 ~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 95 (505)
++++.|++++|.++ .+|..++ .+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 55555556555555 5555555 4555555555555555 55555555555555555555555 4455555555555555
Q ss_pred ccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHh---------hccccccEEEeecCCccccCCccccCC
Q 010663 96 LAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIG---------NLSKSLETLGIANCSISGNIPPAISNL 166 (505)
Q Consensus 96 L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~---------~l~~~L~~L~l~~n~l~~~~~~~~~~l 166 (505)
+++|.+. +.+|..+. .+ ++|++|++++|.++ .+|..+..+
T Consensus 157 L~~n~~~-----------------------------~~~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l 205 (328)
T 4fcg_A 157 IRACPEL-----------------------------TELPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANL 205 (328)
T ss_dssp EEEETTC-----------------------------CCCCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGC
T ss_pred CCCCCCc-----------------------------cccChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCC
Confidence 5554443 33333332 23 56677777777666 566666677
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceec
Q 010663 167 SNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYL 246 (505)
Q Consensus 167 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 246 (505)
++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 777777777777763 4555667777777777777777777777777777777777777777777777777777777777
Q ss_pred cCccCCCCCCccccCCCCCCEEEccCCcc
Q 010663 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLL 275 (505)
Q Consensus 247 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 275 (505)
++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777777777777777777766544
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.9e-30 Score=242.96 Aligned_cols=227 Identities=24% Similarity=0.314 Sum_probs=206.9
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc
Q 010663 63 NASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS 142 (505)
Q Consensus 63 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 142 (505)
...+++.|++++|.++ .+|..+.++++|++|+|++|.++..| ..+..+++|++|++++|.+. .+|..+..+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp------~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l- 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELP------DTMQQFAGLETLTLARNPLR-ALPASIASL- 149 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCC------SCGGGGTTCSEEEEESCCCC-CCCGGGGGC-
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchh------HHHhccCCCCEEECCCCccc-cCcHHHhcC-
Confidence 3578889999999888 67777888999999999999888666 66788899999999999998 788888888
Q ss_pred ccccEEEeecCCccccCCccccC---------CCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCC
Q 010663 143 KSLETLGIANCSISGNIPPAISN---------LSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH 213 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 213 (505)
++|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 78999999999988899987765 999999999999999 788999999999999999999995 6667999
Q ss_pred CCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeee
Q 010663 214 LDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293 (505)
Q Consensus 214 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 293 (505)
+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 010663 294 LSENNLS 300 (505)
Q Consensus 294 l~~n~~~ 300 (505)
+..+.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 9877654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.9e-30 Score=242.21 Aligned_cols=276 Identities=22% Similarity=0.263 Sum_probs=156.3
Q ss_pred CEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCc--cCchHHhhccccc
Q 010663 68 TLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG--FLPSSIGNLSKSL 145 (505)
Q Consensus 68 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~~L 145 (505)
+.++.+++.++ .+|..+ .++|++|++++|.++..+. ..+.++++|++|++++|.++. ..+..+..+ ++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSL 80 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcccCcccccccc-ccc
Confidence 34555555554 233322 2456666666666665542 335666677777777766652 224555554 567
Q ss_pred cEEEeecCCccccCCccccCCCCCCEEEccCCccccccC-ccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccC
Q 010663 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLG 224 (505)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 224 (505)
++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 77777777665 355556667777777777777664433 3566666666666666666665566666666666666666
Q ss_pred ccccc-ccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccC
Q 010663 225 NKFSG-SIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (505)
Q Consensus 225 n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 303 (505)
|.+.+ ..|..+..+++|+.|++++|.+++..|..+.. +++|++|++++|.+++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------LSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT------------------------CTTCCEEECTTSCCSBCC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC------------------------CCCCCEEECCCCccCccC
Confidence 66654 34555555555555555555555444444444 444444455555554444
Q ss_pred CccccCCCCCcEEeCcCccccccCCccCcCCC-CCCEEECcCCcCcccCC--ccccCCCCCCEEeCcCCcCcccCCC
Q 010663 304 PATIGGLKSLQIMDLAYNRLEGQIPESFDDLT-SLEVMNLSNNKISGSIP--KSMEKLFYLRELNLSFNELEGEIPS 377 (505)
Q Consensus 304 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p--~~l~~l~~L~~l~l~~n~l~~~~p~ 377 (505)
+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++.-+ ....-+...+.+.+..+.+.+..|.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 44455666666666666666666666666663 67777777776664321 1111122233444555666665553
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=251.60 Aligned_cols=280 Identities=23% Similarity=0.263 Sum_probs=156.3
Q ss_pred hhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCC
Q 010663 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (505)
Q Consensus 12 ~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 91 (505)
-..|+.....+.+++.++ ++|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 334555566666666666 6666543 366666776666665444466666666666666666666656666666666
Q ss_pred CEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCch--HHhhccccccEEEeecC-CccccCCccccCCCC
Q 010663 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPS--SIGNLSKSLETLGIANC-SISGNIPPAISNLSN 168 (505)
Q Consensus 92 ~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 168 (505)
++|++++|.++..+. ..+.++++|++|++++|.+.. +|. .+..+ ++|++|++++| .+....+..+..+++
T Consensus 103 ~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 103 EHLDLSYNYLSNLSS-----SWFKPLSSLTFLNLLGNPYKT-LGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CEEECCSSCCSSCCH-----HHHTTCTTCSEEECTTCCCSS-SCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CEEECCCCcCCcCCH-----hHhCCCccCCEEECCCCCCcc-cCchhhhccC-CCCcEEECCCCccccccCHHHccCCCC
Confidence 666666666665531 225556666666666665552 222 33333 45555555555 233333444445555
Q ss_pred CCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccC
Q 010663 169 LLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (505)
Q Consensus 169 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 248 (505)
|++|++++|.+++..|..+..+++|++|++++|.+.... +..+..+++|+.|++++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL------------------------EIFVDVTSSVECLELRD 231 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH------------------------HHHHHHTTTEEEEEEES
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch------------------------hhhhhhcccccEEECCC
Confidence 555555555554444444444555555555544443222 11222344555555555
Q ss_pred ccCCCCCCccc---cCCCCCCEEEccCCcccc----ccccccccccCCCeeecccccccccCCcc-ccCCCCCcEEeCcC
Q 010663 249 NRFTSVIPSTF---WRLKDILFLDFSSNLLVG----TLSFDIGNLKVLLGINLSENNLSGDMPAT-IGGLKSLQIMDLAY 320 (505)
Q Consensus 249 n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~ 320 (505)
|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. ++.+++|++|++++
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeC
Confidence 55444333222 124455666666666554 34555667777777778777777 44544 47778888888888
Q ss_pred ccccccC
Q 010663 321 NRLEGQI 327 (505)
Q Consensus 321 n~l~~~~ 327 (505)
|++.+..
T Consensus 311 N~~~~~~ 317 (353)
T 2z80_A 311 NPWDCSC 317 (353)
T ss_dssp SCBCCCH
T ss_pred CCccCcC
Confidence 8777544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=249.46 Aligned_cols=283 Identities=18% Similarity=0.230 Sum_probs=176.6
Q ss_pred CCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhcc
Q 010663 63 NASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLS 142 (505)
Q Consensus 63 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 142 (505)
.|+.....+.+++.++ .+|..+. ++|++|++++|.+++.+. ..+.++++|++|++++|.+++..|..+..+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l- 99 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFSSL- 99 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTTTTTC-
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhhcCCC-
Confidence 3555556777777777 3455443 477777777777776642 356777777777777777776666666665
Q ss_pred ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccC-ccccCCCCCCeEeccCcc-ccccCCccCCCCCCCCeE
Q 010663 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQGLFLAFNK-LVGSCPDELCHLDRLDKL 220 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L 220 (505)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 567777777777764433446667777777777777764322 356667777777777663 454445566666666677
Q ss_pred eccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeeccccccc
Q 010663 221 VLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS 300 (505)
Q Consensus 221 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 300 (505)
++++|.+++..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------- 244 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------- 244 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------
Confidence 77666666666666666666666666666665433333334566666666666555433222111
Q ss_pred ccCCccccCCCCCcEEeCcCccccc----cCCccCcCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEeCcCCcCcccC
Q 010663 301 GDMPATIGGLKSLQIMDLAYNRLEG----QIPESFDDLTSLEVMNLSNNKISGSIPKS-MEKLFYLRELNLSFNELEGEI 375 (505)
Q Consensus 301 ~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~n~l~~~~ 375 (505)
......++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..
T Consensus 245 ------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 245 ------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1123445555666555544 35666777777888888888777 44444 477778888888888877765
Q ss_pred C
Q 010663 376 P 376 (505)
Q Consensus 376 p 376 (505)
|
T Consensus 318 ~ 318 (353)
T 2z80_A 318 P 318 (353)
T ss_dssp H
T ss_pred C
Confidence 5
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.7e-28 Score=245.10 Aligned_cols=249 Identities=22% Similarity=0.227 Sum_probs=161.5
Q ss_pred CEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccC
Q 010663 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 200 (505)
..++.++..++ .+|..+ ++++++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34444444444 344322 23566666666666655556666666666666666666655556666666666666666
Q ss_pred ccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCc-cCCCCCCccccCCCCCCEEEccCCcccccc
Q 010663 201 NKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSN-RFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (505)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (505)
|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..|..+++|++|++++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 6666555555666666666666666666544555666666666666663 33333334566667777777777766643
Q ss_pred ccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCC
Q 010663 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (505)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 359 (505)
| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|++|+|++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2 356677777777777777777777777777777777777777777777777777788888887777766666677777
Q ss_pred CCCEEeCcCCcCcccC
Q 010663 360 YLRELNLSFNELEGEI 375 (505)
Q Consensus 360 ~L~~l~l~~n~l~~~~ 375 (505)
+|+.|++++|++....
T Consensus 291 ~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDC 306 (452)
T ss_dssp TCCEEECCSSCEECST
T ss_pred CCCEEEccCCCcCCCC
Confidence 7788888877765543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.7e-29 Score=233.41 Aligned_cols=224 Identities=23% Similarity=0.297 Sum_probs=132.5
Q ss_pred cEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccC
Q 010663 19 KIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAY 98 (505)
Q Consensus 19 ~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 98 (505)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777777 777644 45788888888887766666777778888888887777777677777777777777777
Q ss_pred cc-ccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCC
Q 010663 99 NN-LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGN 177 (505)
Q Consensus 99 n~-l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 177 (505)
|. +...+. ..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 90 n~~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 90 NAQLRSVDP-----ATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTCCCCCT-----TTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCH-----HHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 75 555521 455666666666666666665444444444 45555555555554433334444555555555555
Q ss_pred ccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCc
Q 010663 178 KLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPS 257 (505)
Q Consensus 178 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 257 (505)
.+++ ..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+.
T Consensus 164 ~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 164 RISS------------------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp CCCE------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred cccc------------------------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 4443 3333344444444445544444444444455555555555555555544444
Q ss_pred cccCCCCCCEEEccCCccc
Q 010663 258 TFWRLKDILFLDFSSNLLV 276 (505)
Q Consensus 258 ~~~~~~~L~~L~l~~n~l~ 276 (505)
.+..+++|+.|++++|.+.
T Consensus 220 ~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHTTCTTCCEEECCSSCEE
T ss_pred HcccCcccCEEeccCCCcc
Confidence 4555555555555555544
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.1e-29 Score=233.85 Aligned_cols=227 Identities=26% Similarity=0.260 Sum_probs=121.2
Q ss_pred CEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccC
Q 010663 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 200 (505)
++++.+++.++ .+|..+ +++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555555 334322 24566666666666554445555556666666666655555555555555555555555
Q ss_pred cc-ccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccccc
Q 010663 201 NK-LVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (505)
Q Consensus 201 n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (505)
|. +....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------- 150 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------- 150 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-------------------
Confidence 54 4444445555555555555555555544444455555555555555555544444444
Q ss_pred ccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCC
Q 010663 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (505)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 359 (505)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++
T Consensus 151 -----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 151 -----DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp -----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred -----cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 444555555555555433333455555555555555555555555555555555555555555544444455555
Q ss_pred CCCEEeCcCCcCcccC
Q 010663 360 YLRELNLSFNELEGEI 375 (505)
Q Consensus 360 ~L~~l~l~~n~l~~~~ 375 (505)
+|+.|++++|++.+..
T Consensus 226 ~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TCCEEECCSSCEECSG
T ss_pred ccCEEeccCCCccCCC
Confidence 5555555555555443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=242.64 Aligned_cols=249 Identities=22% Similarity=0.253 Sum_probs=162.5
Q ss_pred CEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccC
Q 010663 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 200 (505)
+.++..+..++ .+|..+. ++++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|++++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34444444444 3443322 3566666666666655555666666666666666666655555666666666666666
Q ss_pred ccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCcc-CCCCCCccccCCCCCCEEEccCCcccccc
Q 010663 201 NKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR-FTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (505)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (505)
|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|. +....+..|..+++|++|++++|.+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 66665555556666666666666666665555556666666666666633 3333334566667777777777766532
Q ss_pred ccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCC
Q 010663 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (505)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 359 (505)
| .+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 356677777777777777777777777777888888888887777777777788888888888888766666777777
Q ss_pred CCCEEeCcCCcCcccC
Q 010663 360 YLRELNLSFNELEGEI 375 (505)
Q Consensus 360 ~L~~l~l~~n~l~~~~ 375 (505)
+|+.|++++|++....
T Consensus 280 ~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 280 HLERIHLHHNPWNCNC 295 (440)
T ss_dssp TCCEEECCSSCEECSS
T ss_pred CCCEEEcCCCCccCCC
Confidence 8888888888776543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=242.29 Aligned_cols=247 Identities=25% Similarity=0.278 Sum_probs=188.7
Q ss_pred CcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEecc
Q 010663 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (505)
Q Consensus 18 L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 97 (505)
.+.++.++..++ ++|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 567888888887 8887664 578888888888887777888888888888888888888777888888888888888
Q ss_pred CccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCC-ccccCCccccCCCCCCEEEccC
Q 010663 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCS-ISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
+|.++..+. ..+..+++|++|++++|.+....+..+..+ ++|++|++++|. +....+..|..+++|++|++++
T Consensus 121 ~n~l~~~~~-----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 121 DNRLTTIPN-----GAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SSCCSSCCT-----TTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CCcCCeeCH-----hHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 888887753 457788888888888888886555566666 678888888744 4333344677788888888888
Q ss_pred CccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCC
Q 010663 177 NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256 (505)
Q Consensus 177 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 256 (505)
|.++ .+| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 195 n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp SCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred CcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 8877 344 36777778888888887777777777777777777777777777777777777777777777777777666
Q ss_pred ccccCCCCCCEEEccCCccc
Q 010663 257 STFWRLKDILFLDFSSNLLV 276 (505)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l~ 276 (505)
..|..+++|+.|++++|.+.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 66777777777777777654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-28 Score=243.51 Aligned_cols=247 Identities=23% Similarity=0.259 Sum_probs=180.0
Q ss_pred CcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEecc
Q 010663 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (505)
Q Consensus 18 L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 97 (505)
.+.++.++..++ ++|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 467777777777 7787653 578888888888887777888888888888888888887777888888888888888
Q ss_pred CccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCC-ccccCCccccCCCCCCEEEccC
Q 010663 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCS-ISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
+|.++..+. ..+..+++|++|++++|.+....+..+..+ ++|++|++++|. +....+..|..+++|++|++++
T Consensus 132 ~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 132 DNWLTVIPS-----GAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp SSCCSBCCT-----TTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcCCccCh-----hhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 888877753 457778888888888888875555556665 678888887743 3333334567777777777777
Q ss_pred CccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCC
Q 010663 177 NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256 (505)
Q Consensus 177 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 256 (505)
|.+++ +| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 206 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 206 CNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred Ccccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 77774 33 36677777777777777777667777777777777777777776666667777777777777777776666
Q ss_pred ccccCCCCCCEEEccCCccc
Q 010663 257 STFWRLKDILFLDFSSNLLV 276 (505)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l~ 276 (505)
..+..+++|+.|++++|.+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 66666677777777766653
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.7e-30 Score=244.85 Aligned_cols=248 Identities=19% Similarity=0.218 Sum_probs=150.5
Q ss_pred CCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCc-cccCCcccc-------CCCCCCEEEccCCccccccCcc
Q 010663 115 ANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSI-SGNIPPAIS-------NLSNLLTLVLEGNKLTGPIPTT 186 (505)
Q Consensus 115 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~ 186 (505)
+..++|+.+++++|.+ .+|..+... |++|++++|.+ ...+|..+. .+++|++|++++|.+++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3344555566666655 455544432 55556666655 233444443 4566666666666666555555
Q ss_pred c--cCCCCCCeEeccCccccccCCccCCCC-----CCCCeEeccCcccccccCccccCCCCCCceeccCccCCCC--CCc
Q 010663 187 F--GRLQKLQGLFLAFNKLVGSCPDELCHL-----DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV--IPS 257 (505)
Q Consensus 187 l--~~l~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~ 257 (505)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..++.+++|+.|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 4 5666666666666666554 4444443 5666666666666655555666666666666666665543 122
Q ss_pred cc--cCCCCCCEEEccCCccccc--cc-cccccccCCCeeecccccccccCC-ccccCCCCCcEEeCcCccccccCCccC
Q 010663 258 TF--WRLKDILFLDFSSNLLVGT--LS-FDIGNLKVLLGINLSENNLSGDMP-ATIGGLKSLQIMDLAYNRLEGQIPESF 331 (505)
Q Consensus 258 ~~--~~~~~L~~L~l~~n~l~~~--~~-~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 331 (505)
.+ ..+++|++|++++|.+.+. ++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 22 5566666666666666521 11 223455677777777777766554 34555677777777777777 566655
Q ss_pred cCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcc
Q 010663 332 DDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEG 373 (505)
Q Consensus 332 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 373 (505)
. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 6777888888877755 55 7777778888888887764
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=240.58 Aligned_cols=258 Identities=18% Similarity=0.158 Sum_probs=156.2
Q ss_pred CCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEec
Q 010663 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (505)
Q Consensus 17 ~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 96 (505)
.++..+++.+.+. +.+..+...+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3555666666665 4455555466788888888888876667778888888888888888876544 777888888888
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccC
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
++|.+++.+ ..++|++|++++|.+++..+.. + ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 88 s~n~l~~l~----------~~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 88 NNNYVQELL----------VGPSIETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSEEEEEE----------ECTTCCEEECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred cCCcccccc----------CCCCcCEEECCCCccCCcCccc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 888776542 2367777777777776544332 2 4566677777766655555666666666666666
Q ss_pred CccccccCccc-cCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCC
Q 010663 177 NKLTGPIPTTF-GRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVI 255 (505)
Q Consensus 177 n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 255 (505)
|.+++..+..+ ..+++|++|++++|.+++.. ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-- 228 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-- 228 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--
Confidence 66665555444 24566666666666655431 12235555555555555553 22234445555555555555442
Q ss_pred CccccCCCCCCEEEccCCccccccccccccccCCCeeeccccccc-ccCCccccCCCCCcEEeCc
Q 010663 256 PSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLS-GDMPATIGGLKSLQIMDLA 319 (505)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~ 319 (505)
+|..+..+++|+.|++++|.+. +.+|..+..+++|+.++++
T Consensus 229 -----------------------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 229 -----------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -----------------------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred -----------------------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 3333444455555555555554 4444555555555555555
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=8.3e-30 Score=241.50 Aligned_cols=249 Identities=22% Similarity=0.275 Sum_probs=191.5
Q ss_pred ccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCC-CccCchHHh-------hccccccEEEeecCCcc
Q 010663 85 IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPL-DGFLPSSIG-------NLSKSLETLGIANCSIS 156 (505)
Q Consensus 85 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~-------~l~~~L~~L~l~~n~l~ 156 (505)
++..++|+.|++++|.+ ..| ..+... |+.|++++|.+ ...+|..+. .+ ++|++|++++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p------~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADL------GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCC------HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCB
T ss_pred EccCCCceeEeeccccc-ccH------HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCccc
Confidence 34455666666666666 444 222222 66667777666 345565554 45 67888888888888
Q ss_pred ccCCccc--cCCCCCCEEEccCCccccccCccccCC-----CCCCeEeccCccccccCCccCCCCCCCCeEeccCccccc
Q 010663 157 GNIPPAI--SNLSNLLTLVLEGNKLTGPIPTTFGRL-----QKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG 229 (505)
Q Consensus 157 ~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 229 (505)
+.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 8888776 7888888889988888866 7777766 889999999999888887888889999999999998776
Q ss_pred c--cCccc--cCCCCCCceeccCccCCCC---CCccccCCCCCCEEEccCCccccccc-cccccccCCCeeecccccccc
Q 010663 230 S--IPSCL--SNLTSLRFLYLGSNRFTSV---IPSTFWRLKDILFLDFSSNLLVGTLS-FDIGNLKVLLGINLSENNLSG 301 (505)
Q Consensus 230 ~--~~~~~--~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~ 301 (505)
. .+..+ ..+++|+.|++++|.+++. ....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 4 33334 7888999999999988742 22344577899999999999988764 45567889999999999998
Q ss_pred cCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcc
Q 010663 302 DMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISG 349 (505)
Q Consensus 302 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 349 (505)
.+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7787776 8999999999999866 65 8899999999999999885
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.3e-31 Score=272.98 Aligned_cols=378 Identities=14% Similarity=0.072 Sum_probs=232.5
Q ss_pred hhcCCCCcEEEcccccccccCchhhhcCCCC-CCEEeccCCc-ccc-cCchhhhCCCCCCEEEccCCcCCcc----Cccc
Q 010663 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPT-VEHLNLALNR-FSG-TIPSSITNASKLTLLELGGNTFSGL----IPDT 84 (505)
Q Consensus 12 ~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~-L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~ 84 (505)
...|++|++|+|+++.+++..+..+...+++ |++|++++|. ++. .++....++++|++|+|++|.+++. ++..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 3389999999999999987777777633455 9999999986 221 2344456899999999999998766 3345
Q ss_pred ccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCcc---ccCCc
Q 010663 85 IGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSIS---GNIPP 161 (505)
Q Consensus 85 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~---~~~~~ 161 (505)
+.++++|++|++++|.+++... ..+...+.++++|++|++++|.+.+ ++..+..+ ++|++|+++..... ...+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISP-KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCH-HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTSSS
T ss_pred HhcCCCccEEEeeccCCCccCH-HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHHHH
Confidence 5678999999999999874421 0111345688999999999998885 77778877 78999999864322 23344
Q ss_pred cccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCC-ccCCCCCCCCeEeccCcccccccCccccCCCC
Q 010663 162 AISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCP-DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTS 240 (505)
Q Consensus 162 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 240 (505)
.+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 566677777777776533 3556666677777777777777554332 33466777777777633222233333455666
Q ss_pred CCceeccC-----------ccCCCC-CCccccCCCCCCEEEccCCcccccccccccc-ccCCCeeecc----ccccccc-
Q 010663 241 LRFLYLGS-----------NRFTSV-IPSTFWRLKDILFLDFSSNLLVGTLSFDIGN-LKVLLGINLS----ENNLSGD- 302 (505)
Q Consensus 241 L~~L~l~~-----------n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~~~~~- 302 (505)
|+.|++++ +.+++. ++.....+++|++|++..|.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 77777762 344332 1122334666777776666666555444443 6666666664 3444432
Q ss_pred ----CCccccCCCCCcEEeCcCcc--ccccCCccCc-CCCCCCEEECcCCcCcc-cCCccccCCCCCCEEeCcCCcCccc
Q 010663 303 ----MPATIGGLKSLQIMDLAYNR--LEGQIPESFD-DLTSLEVMNLSNNKISG-SIPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 303 ----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
++..+..+++|++|++++|. +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|++++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 22234456666666665433 3333222222 25566666666666554 2333445556666666666665432
Q ss_pred CCCC--CccCccCcccccCCc
Q 010663 375 IPSG--GIFANFTAESFMGNE 393 (505)
Q Consensus 375 ~p~~--~~~~~~~~~~~~~n~ 393 (505)
.... ..+.+++.+++.+|.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhcCccCeeECcCCc
Confidence 1111 123444555555554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.8e-29 Score=239.73 Aligned_cols=268 Identities=22% Similarity=0.182 Sum_probs=183.7
Q ss_pred CCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCC
Q 010663 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLR 121 (505)
Q Consensus 42 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~ 121 (505)
+++..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++.+ .+..+++|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~ 83 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLR 83 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCC
Confidence 3455677777776555566667788999999999998887788888999999999988887653 267778888
Q ss_pred EEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCc
Q 010663 122 SLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFN 201 (505)
Q Consensus 122 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 201 (505)
+|++++|.+++. + .. ++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..++
T Consensus 84 ~L~Ls~n~l~~l-~----~~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~---------- 144 (317)
T 3o53_A 84 TLDLNNNYVQEL-L----VG-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS---------- 144 (317)
T ss_dssp EEECCSSEEEEE-E----EC-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS----------
T ss_pred EEECcCCccccc-c----CC-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC----------
Confidence 888888876632 2 11 4566666666655533322 234455555555555544444444444
Q ss_pred cccccCCccCCCCCCCCeEeccCcccccccCccc-cCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccc
Q 010663 202 KLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCL-SNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLS 280 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 280 (505)
+|++|++++|.+++..+..+ ..+++|+.|++++|.+++.. ....+++|+.|++++|.+.+. +
T Consensus 145 --------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~ 207 (317)
T 3o53_A 145 --------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-G 207 (317)
T ss_dssp --------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-C
T ss_pred --------------CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-h
Confidence 45555555555444333333 24556666666666655431 122367777788888777754 3
Q ss_pred cccccccCCCeeecccccccccCCccccCCCCCcEEeCcCcccc-ccCCccCcCCCCCCEEECcC-CcCcccCCc
Q 010663 281 FDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLE-GQIPESFDDLTSLEVMNLSN-NKISGSIPK 353 (505)
Q Consensus 281 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~ 353 (505)
..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++ +.+.+..|.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 44788899999999999998 57888999999999999999998 77888899999999999985 456655544
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.2e-31 Score=271.53 Aligned_cols=386 Identities=14% Similarity=0.059 Sum_probs=264.2
Q ss_pred cccccchhhhcCCCCcEEEcccccc---cccCchh-----------hhcCCCCCCEEeccCCcccccCchhhhCC-C-CC
Q 010663 4 LVGMVSATIFNMSTLKIIILINNSL---SGSLPSR-----------IGLSLPTVEHLNLALNRFSGTIPSSITNA-S-KL 67 (505)
Q Consensus 4 ~~~~~~~~~~~l~~L~~L~ls~n~~---~~~ip~~-----------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~-~L 67 (505)
+....+..+..+++|++|+++++.. .+.+|.. +...+++|++|+|++|.+++..+..+... + +|
T Consensus 61 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 61 YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDL 140 (592)
T ss_dssp GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccC
Confidence 3444556677899999999977432 1233322 22258899999999998877666666663 3 49
Q ss_pred CEEEccCCc-CCc-cCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCc----cCchHHhhc
Q 010663 68 TLLELGGNT-FSG-LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDG----FLPSSIGNL 141 (505)
Q Consensus 68 ~~L~l~~n~-~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l 141 (505)
++|++++|. ++. .++....++++|++|+|++|.+++....+ +......+++|++|++++|.+++ .++..+..+
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 999998876 221 12233347889999999999876542110 11234577899999999998873 334444455
Q ss_pred cccccEEEeecCCccccCCccccCCCCCCEEEccCCccc---cccCccccCCCCCCeEeccCccccccCCccCCCCCCCC
Q 010663 142 SKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLT---GPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLD 218 (505)
Q Consensus 142 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 218 (505)
++|++|++++|.+.+ +|..+..+++|++|+++..... +..+..+..+++|+.|.++++. ...+|..+..+++|+
T Consensus 220 -~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 220 -RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIR 296 (592)
T ss_dssp -TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCC
T ss_pred -CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCc
Confidence 789999999988874 6778888999999999864332 2344567788899999888753 335667777888999
Q ss_pred eEeccCcccccccC-ccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccC-----------Cccccccc-ccccc
Q 010663 219 KLVLLGNKFSGSIP-SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS-----------NLLVGTLS-FDIGN 285 (505)
Q Consensus 219 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~-~~~~~ 285 (505)
+|++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++ +.+++... .....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999988765433 3467889999999984433333444456788899999983 45543322 22345
Q ss_pred ccCCCeeecccccccccCCccccC-CCCCcEEeCc----Ccccccc-----CCccCcCCCCCCEEECcCCc--CcccCCc
Q 010663 286 LKVLLGINLSENNLSGDMPATIGG-LKSLQIMDLA----YNRLEGQ-----IPESFDDLTSLEVMNLSNNK--ISGSIPK 353 (505)
Q Consensus 286 ~~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~p~ 353 (505)
+++|++|+++.+.+++..+..++. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 889999999888888777666655 8889999996 5566643 33335668899999997654 5654444
Q ss_pred ccc-CCCCCCEEeCcCCcCccc-CCCC-CccCccCcccccCCc
Q 010663 354 SME-KLFYLRELNLSFNELEGE-IPSG-GIFANFTAESFMGNE 393 (505)
Q Consensus 354 ~l~-~l~~L~~l~l~~n~l~~~-~p~~-~~~~~~~~~~~~~n~ 393 (505)
.+. .+++|+.|++++|.+++. ++.. ....+++.+++.+|+
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 443 478899999999988652 2211 234667777888776
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.2e-26 Score=237.34 Aligned_cols=265 Identities=25% Similarity=0.324 Sum_probs=118.7
Q ss_pred CCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEec
Q 010663 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (505)
Q Consensus 17 ~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 96 (505)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 3555555555555 5554432 45555555555554 3333 34455555555555442 222 3444555555
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccC
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
++|.++..+ . .+++|+.|++++|.++. +| .. +++|++|++++
T Consensus 109 s~N~l~~l~------~---~l~~L~~L~L~~N~l~~-lp-------------------------~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 109 FSNPLTHLP------A---LPSGLCKLWIFGNQLTS-LP-------------------------VL---PPGLQELSVSD 150 (622)
T ss_dssp CSCCCCCCC------C---CCTTCCEEECCSSCCSC-CC-------------------------CC---CTTCCEEECCS
T ss_pred cCCcCCCCC------C---CCCCcCEEECCCCCCCc-CC-------------------------CC---CCCCCEEECcC
Confidence 555444433 1 23344444444444432 22 21 23444444444
Q ss_pred CccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCC
Q 010663 177 NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP 256 (505)
Q Consensus 177 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 256 (505)
|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++. +|
T Consensus 151 N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~ 217 (622)
T 3g06_A 151 NQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LP 217 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC
T ss_pred CcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cC
Confidence 44432 221 12334444444444432 22 223444444444444442 2221 2344444555444442 22
Q ss_pred ccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCC
Q 010663 257 STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTS 336 (505)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 336 (505)
. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|++|.++ .+|..+..+++
T Consensus 218 ~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 218 A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 1 12445555555554443 22 23344555555555554 3333 3445555555555555 44555555555
Q ss_pred CCEEECcCCcCcccCCcccc
Q 010663 337 LEVMNLSNNKISGSIPKSME 356 (505)
Q Consensus 337 L~~L~l~~n~l~~~~p~~l~ 356 (505)
|+.|++++|.+++..|..+.
T Consensus 286 L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHH
Confidence 55555555555555554443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.5e-26 Score=233.98 Aligned_cols=262 Identities=26% Similarity=0.306 Sum_probs=211.2
Q ss_pred CCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccc
Q 010663 66 KLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSL 145 (505)
Q Consensus 66 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L 145 (505)
+++.|++++|.++ .+|..+. ++|++|++++|.++.+| . .+++|++|++++|.++ .+|. .+ ++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp------~---~l~~L~~L~Ls~N~l~-~lp~---~l-~~L 103 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP------A---LPPELRTLEVSGNQLT-SLPV---LP-PGL 103 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC------C---CCTTCCEEEECSCCCS-CCCC---CC-TTC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC------C---cCCCCCEEEcCCCcCC-cCCC---CC-CCC
Confidence 5777777777777 4565554 67888888888777665 2 4577888888888877 4554 33 688
Q ss_pred cEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCc
Q 010663 146 ETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN 225 (505)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 225 (505)
++|++++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|
T Consensus 104 ~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N 171 (622)
T 3g06_A 104 LELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNN 171 (622)
T ss_dssp CEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCC
Confidence 999999988874 444 56889999999999985 5553 4899999999999985 443 3578999999999
Q ss_pred ccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCc
Q 010663 226 KFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPA 305 (505)
Q Consensus 226 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 305 (505)
.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.+++ +|
T Consensus 172 ~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 172 QLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp CCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC-
T ss_pred CCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC-
Confidence 9985 56 457899999999999986 343 34899999999999984 343 35889999999999985 66
Q ss_pred cccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCC
Q 010663 306 TIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (505)
Q Consensus 306 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~ 377 (505)
..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 238 --~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred --CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 45689999999999998 5665 5789999999999999 7899999999999999999999987764
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-28 Score=242.00 Aligned_cols=215 Identities=20% Similarity=0.161 Sum_probs=97.2
Q ss_pred cccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEecc
Q 010663 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223 (505)
Q Consensus 144 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 223 (505)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 34444444444443333444444444444444444443322 4444444444444444432211 1444444444
Q ss_pred CcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccc-cccCCCeeeccccccccc
Q 010663 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIG-NLKVLLGINLSENNLSGD 302 (505)
Q Consensus 224 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~ 302 (505)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 4444433222 234444444544444444444444444555555555554444444433 345555555555555433
Q ss_pred CCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCc
Q 010663 303 MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (505)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 372 (505)
.+ ...+++|+.|+|++|.+++.. ..+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 11 223455555555555555322 234455555555555555553 4444455555555555555554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=239.66 Aligned_cols=215 Identities=19% Similarity=0.166 Sum_probs=130.0
Q ss_pred CCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCC
Q 010663 42 TVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLR 121 (505)
Q Consensus 42 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~ 121 (505)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.+++.+ ..++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPSIE 102 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECTTCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCCCcC
Confidence 67777777777776666777777777777777777776554 777777777777777776543 226677
Q ss_pred EEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCcccc-CCCCCCeEeccC
Q 010663 122 SLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFG-RLQKLQGLFLAF 200 (505)
Q Consensus 122 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~ 200 (505)
+|++++|.+++..+.. + ++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++
T Consensus 103 ~L~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 7777777776544332 2 4566666666666665566666666666666666666665555554 566666666666
Q ss_pred ccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccc
Q 010663 201 NKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLV 276 (505)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 276 (505)
|.+++..+ ...+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 66654422 22355555555555555533 2234555555555555555553 3333444444444444444443
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7.9e-26 Score=210.42 Aligned_cols=209 Identities=22% Similarity=0.217 Sum_probs=121.1
Q ss_pred CCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceecc
Q 010663 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (505)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 247 (505)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444333344444455555555554444444444455555555555555544444445555555555555
Q ss_pred CccCCCCCCccccCCCCCCEEEccCCccccc-cccccccccCCCeeecccccccccCCccccCCCCCc----EEeCcCcc
Q 010663 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGT-LSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQ----IMDLAYNR 322 (505)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n~ 322 (505)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555544444455555555555555555442 355555566666666666666555455555444444 67788888
Q ss_pred ccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCC
Q 010663 323 LEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (505)
Q Consensus 323 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~ 377 (505)
+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 7765555444 34788888888888866666677888888888888888876654
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.1e-28 Score=253.66 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=92.0
Q ss_pred ccCCCCCCeEeccCccccccCC-ccCCCCCCCCeEeccCccccc-ccCccccCCCCCCceeccC---------ccCCCCC
Q 010663 187 FGRLQKLQGLFLAFNKLVGSCP-DELCHLDRLDKLVLLGNKFSG-SIPSCLSNLTSLRFLYLGS---------NRFTSVI 255 (505)
Q Consensus 187 l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~---------n~~~~~~ 255 (505)
+..+++|++|++++|.+++... ..+..+++|++|++++| +.. .++.....+++|+.|+++. +.+++..
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3356677777777766543322 22446667777777666 322 2222223456666666632 2333221
Q ss_pred Cccc-cCCCCCCEEEccCCccccccccccc-cccCCCeeecc--c----ccccc-----cCCccccCCCCCcEEeCcCcc
Q 010663 256 PSTF-WRLKDILFLDFSSNLLVGTLSFDIG-NLKVLLGINLS--E----NNLSG-----DMPATIGGLKSLQIMDLAYNR 322 (505)
Q Consensus 256 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~-----~~~~~~~~l~~L~~L~l~~n~ 322 (505)
...+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 1122 2356666666666665544433333 35666666666 2 33331 1112244555666666655 4
Q ss_pred ccccCCccCcC-CCCCCEEECcCCcCcccCCccc-cCCCCCCEEeCcCCcCc
Q 010663 323 LEGQIPESFDD-LTSLEVMNLSNNKISGSIPKSM-EKLFYLRELNLSFNELE 372 (505)
Q Consensus 323 l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~l~l~~n~l~ 372 (505)
+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 44333333333 5566666666666554433333 44566666666666653
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=205.43 Aligned_cols=208 Identities=23% Similarity=0.230 Sum_probs=166.7
Q ss_pred ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEec
Q 010663 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (505)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777666667777888888888888887666667778888888888888887777777888888888888
Q ss_pred cCcccccccCccccCCCCCCceeccCccCCCC-CCccccCCCCCCEEEccCCccccccccccccccCCC----eeecccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSV-IPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLL----GINLSEN 297 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~l~~n 297 (505)
++|.+.+..+..+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|.+.+..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888766665678888888888888888764 578888888888888888888877777777777777 8899999
Q ss_pred cccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccC
Q 010663 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351 (505)
Q Consensus 298 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 351 (505)
.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 99865555554 458999999999999777777899999999999999998644
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2e-24 Score=200.09 Aligned_cols=205 Identities=24% Similarity=0.254 Sum_probs=124.2
Q ss_pred CCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccC
Q 010663 169 LLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (505)
Q Consensus 169 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 248 (505)
.+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344455555444 2333222 3455555555555544444455555555555555555533333445555555555555
Q ss_pred ccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCC
Q 010663 249 NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328 (505)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 328 (505)
|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 55555555555556666666666666665555556666666667777776665555556777777777777777776666
Q ss_pred ccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 329 ESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 329 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 667777778888888887776555567777778888877777765443
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.9e-28 Score=248.88 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred CCCCCCEEeccCCcccccCchhhh-CCCCCCEEEccCC-cCCcc-CcccccCCCCCCEEeccCccccCCCCCcccccccC
Q 010663 39 SLPTVEHLNLALNRFSGTIPSSIT-NASKLTLLELGGN-TFSGL-IPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLA 115 (505)
Q Consensus 39 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 115 (505)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+++.... .+.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH-WLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG-GGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH-HHHHHhh
Confidence 455666666666665554444443 4566666666655 33322 223333566666666666655443100 0001122
Q ss_pred CCCCCCEEECcCCC--CCccCchHH-hhccccccEEEeecCCccccCCccccCCCCCCEEE
Q 010663 116 NCKKLRSLNFIGNP--LDGFLPSSI-GNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (505)
Q Consensus 116 ~l~~L~~L~l~~n~--~~~~~~~~~-~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 173 (505)
.+++|++|++++|. +.......+ .. .++|++|++++|.....++..+..+++|++|+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~-~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTR-CPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHH-CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHh-CCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 45566666666554 111111111 12 24566666655522112444444445555554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.9e-25 Score=205.83 Aligned_cols=208 Identities=23% Similarity=0.231 Sum_probs=111.5
Q ss_pred CCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCC
Q 010663 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNL 166 (505)
Q Consensus 87 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 166 (505)
.+++|+.|++++|.+...+ .+..+++|++|++++|.+.+ + ..+..+ ++|++|++++|.+++..+..+..+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-------~l~~l~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-------GIQYLPNVRYLALGGNKLHD-I-SALKEL-TNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-------TGGGCTTCCEEECTTSCCCC-C-GGGTTC-TTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cccceeeeeeCCCCccccc-------ccccCCCCcEEECCCCCCCC-c-hhhcCC-CCCCEEECCCCccCccChhHhcCC
Confidence 4444555555554444331 24445555555555555443 1 233333 445555555555554444445555
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceec
Q 010663 167 SNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYL 246 (505)
Q Consensus 167 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 246 (505)
++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 56666666666655544444555666666666666555555555555666666666666665544444555666666666
Q ss_pred cCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCC
Q 010663 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLK 311 (505)
Q Consensus 247 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 311 (505)
++|.+++..+..+..+++|+.|++++|.+.+ .++.|+.++++.|.++|.+|.+++.+.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 6666665555555555666666666655542 233455555555666555555554443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.9e-25 Score=207.15 Aligned_cols=206 Identities=26% Similarity=0.287 Sum_probs=130.5
Q ss_pred ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEec
Q 010663 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (505)
++|+.|++.+|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 445555555555541 2 2355566666666666665532 24556666666666666666555555566666666666
Q ss_pred cCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeeccccccccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD 302 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 302 (505)
++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 66666655555566666666666666666665555566666667777777666665555566677777777777777766
Q ss_pred CCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCC
Q 010663 303 MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (505)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 359 (505)
.+..+..+++|++|++++|.+.+. +++|+.|++..|.++|.+|..++.+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 666667777777777777766543 44677777777777777777766543
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.7e-24 Score=197.57 Aligned_cols=183 Identities=26% Similarity=0.306 Sum_probs=113.6
Q ss_pred CCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceecc
Q 010663 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (505)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 247 (505)
++++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 44455555555444333344555555555555555544333444455555555555555554444445555666666666
Q ss_pred CccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccC
Q 010663 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (505)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 327 (505)
+|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 66666555555666666666666666666555555666777777777777777555566777888888888888888666
Q ss_pred CccCcCCCCCCEEECcCCcCccc
Q 010663 328 PESFDDLTSLEVMNLSNNKISGS 350 (505)
Q Consensus 328 ~~~~~~l~~L~~L~l~~n~l~~~ 350 (505)
+..+..+++|+.|++++|.+...
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCS
T ss_pred HHHhccccCCCEEEecCCCeeCC
Confidence 66677888888888888887643
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.5e-24 Score=198.26 Aligned_cols=205 Identities=23% Similarity=0.191 Sum_probs=133.1
Q ss_pred ccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCC
Q 010663 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLR 242 (505)
Q Consensus 163 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 242 (505)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 445556666666666655 3443332 456666666666665555556666666666666666654322 15566666
Q ss_pred ceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCcc
Q 010663 243 FLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNR 322 (505)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 322 (505)
.|++++|.+. .+|..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 345556666667777777776666656666677777777777777775555566777777777777777
Q ss_pred ccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCccc
Q 010663 323 LEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 323 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
+++..+..+..+++|++|++++|+++ .+|..+.....|+.+++++|++...
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 77555556677777888888877777 5666666777777777777777543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5e-24 Score=199.01 Aligned_cols=202 Identities=22% Similarity=0.207 Sum_probs=121.9
Q ss_pred hhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCC
Q 010663 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (505)
Q Consensus 12 ~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 91 (505)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+ .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 667788888888888887 7777653 578888888888876667778888888888888887775433 2667777
Q ss_pred CEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCE
Q 010663 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLT 171 (505)
Q Consensus 92 ~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 171 (505)
++|++++|.++..| ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..|..+++|++
T Consensus 80 ~~L~Ls~N~l~~l~------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 80 GTLDLSHNQLQSLP------LLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CEEECCSSCCSSCC------CCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECCCCcCCcCc------hhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCE
Confidence 77777777776655 445566666666666666664444444444 45555555555555443444444555555
Q ss_pred EEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCccc
Q 010663 172 LVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKF 227 (505)
Q Consensus 172 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 227 (505)
|++++|++++..+..|..+++|++|++++|.++ .+|..+...++|+.+++++|.+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 555555554333333444445555555544444 3333333444444444444443
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-25 Score=219.93 Aligned_cols=259 Identities=20% Similarity=0.200 Sum_probs=117.9
Q ss_pred cCchhhhcCCCCCCEEeccCCcccccCc----hhhhCCCCCCEEEccCC---cCCccCcccc-------cCCCCCCEEec
Q 010663 31 SLPSRIGLSLPTVEHLNLALNRFSGTIP----SSITNASKLTLLELGGN---TFSGLIPDTI-------GNLRNLAWLGL 96 (505)
Q Consensus 31 ~ip~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n---~~~~~~~~~l-------~~l~~L~~L~L 96 (505)
.++..+. .+++|++|+|++|.++...+ ..+..+++|++|+|++| .+++.+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4555555 46666666666666654322 23445666666666654 2333344333 45555555555
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccC
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
++|.+.... ...+...+..+++|++|++++|.++...+..+......+ ..+.+. +..++|++|++++
T Consensus 102 s~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l-----~~~~~~-------~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 102 SDNAFGPTA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL-----AVNKKA-------KNAPPLRSIICGR 168 (386)
T ss_dssp CSCCCCTTT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH-----HHHHHH-------HTCCCCCEEECCS
T ss_pred CCCcCCHHH-HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH-----hhhhhc-------ccCCCCcEEECCC
Confidence 555554310 000113344555555555555555433222222211000 000000 0004444444444
Q ss_pred Cccc-cccC---ccccCCCCCCeEeccCccccc-----cCCccCCCCCCCCeEeccCcccc----cccCccccCCCCCCc
Q 010663 177 NKLT-GPIP---TTFGRLQKLQGLFLAFNKLVG-----SCPDELCHLDRLDKLVLLGNKFS----GSIPSCLSNLTSLRF 243 (505)
Q Consensus 177 n~~~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~ 243 (505)
|.++ +.++ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 4443 1222 233344444444444444431 12223444455555555555543 334444555555555
Q ss_pred eeccCccCCCC----CCcccc--CCCCCCEEEccCCcccc----cccccc-ccccCCCeeecccccccccC
Q 010663 244 LYLGSNRFTSV----IPSTFW--RLKDILFLDFSSNLLVG----TLSFDI-GNLKVLLGINLSENNLSGDM 303 (505)
Q Consensus 244 L~l~~n~~~~~----~~~~~~--~~~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~~~~~~ 303 (505)
|++++|.+++. ++..+. .+++|+.|++++|.+.+ .+|..+ .++++|++|++++|.+++..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555443 233332 25556666666666554 244444 44566666666666665443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.8e-25 Score=218.44 Aligned_cols=245 Identities=22% Similarity=0.259 Sum_probs=169.1
Q ss_pred ccchhhhcCCCCcEEEcccccccccCchh----hhcCCCCCCEEeccCC---cccccCchhh-------hCCCCCCEEEc
Q 010663 7 MVSATIFNMSTLKIIILINNSLSGSLPSR----IGLSLPTVEHLNLALN---RFSGTIPSSI-------TNASKLTLLEL 72 (505)
Q Consensus 7 ~~~~~~~~l~~L~~L~ls~n~~~~~ip~~----~~~~l~~L~~L~l~~n---~~~~~~~~~~-------~~l~~L~~L~l 72 (505)
.++..+..+++|++|+|++|.+.+..+.. +. .+++|++|+|++| ++++.+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHH-hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 46778899999999999999998654433 54 7999999999996 4556667665 78999999999
Q ss_pred cCCcCCc----cCcccccCCCCCCEEeccCccccCCCCCcccccccCCC---------CCCCEEECcCCCCC-ccCc---
Q 010663 73 GGNTFSG----LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANC---------KKLRSLNFIGNPLD-GFLP--- 135 (505)
Q Consensus 73 ~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l---------~~L~~L~l~~n~~~-~~~~--- 135 (505)
++|.+++ .+|..+..+++|++|+|++|.+..... ..+...+..+ ++|++|++++|.++ +.++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9999997 467788999999999999999864410 0011223344 88999999999887 3344
Q ss_pred hHHhhccccccEEEeecCCccc-----cCCccccCCCCCCEEEccCCccc----cccCccccCCCCCCeEeccCcccccc
Q 010663 136 SSIGNLSKSLETLGIANCSISG-----NIPPAISNLSNLLTLVLEGNKLT----GPIPTTFGRLQKLQGLFLAFNKLVGS 206 (505)
Q Consensus 136 ~~~~~l~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~ 206 (505)
..+..+ ++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|++++|.+++.
T Consensus 181 ~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 181 KTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 344455 578888888887762 23336667777777777777775 45566666777777777777766544
Q ss_pred ----CCccC--CCCCCCCeEeccCccccc----ccCccc-cCCCCCCceeccCccCCCC
Q 010663 207 ----CPDEL--CHLDRLDKLVLLGNKFSG----SIPSCL-SNLTSLRFLYLGSNRFTSV 254 (505)
Q Consensus 207 ----~~~~~--~~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~ 254 (505)
++..+ ..+++|++|++++|.+++ .+|..+ .++++|+.|++++|.+++.
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 33333 225566666666666554 244444 3345555555555555543
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=4.2e-25 Score=213.72 Aligned_cols=182 Identities=20% Similarity=0.213 Sum_probs=80.7
Q ss_pred EEcccccccccCchhhhcCCCCCCEEeccCCcccccCc----hhhhCCC-CCCEEEccCCcCCccCcccccCC-----CC
Q 010663 21 IILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIP----SSITNAS-KLTLLELGGNTFSGLIPDTIGNL-----RN 90 (505)
Q Consensus 21 L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 90 (505)
++++.|.++|.+|..+. ..++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34555555544444443 33445555555555543333 4444555 55555555555554444444432 55
Q ss_pred CCEEeccCccccCCCCCcccccccCCC-CCCCEEECcCCCCCccCchHHhhc----cccccEEEeecCCccccC----Cc
Q 010663 91 LAWLGLAYNNLTSSTSKLSFLSSLANC-KKLRSLNFIGNPLDGFLPSSIGNL----SKSLETLGIANCSISGNI----PP 161 (505)
Q Consensus 91 L~~L~L~~n~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~l----~~~L~~L~l~~n~l~~~~----~~ 161 (505)
|++|+|++|.+++.... .+...+..+ ++|++|++++|.+++..+..+... +++|++|++++|.++... +.
T Consensus 82 L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 55555555555433100 000112333 455555555555544443333321 134555555555544322 12
Q ss_pred cccCCC-CCCEEEccCCccccccCccc----cCC-CCCCeEeccCcccc
Q 010663 162 AISNLS-NLLTLVLEGNKLTGPIPTTF----GRL-QKLQGLFLAFNKLV 204 (505)
Q Consensus 162 ~~~~l~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~~~ 204 (505)
.+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 222332 55555555555544333222 222 24555555554444
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=199.21 Aligned_cols=228 Identities=20% Similarity=0.201 Sum_probs=137.2
Q ss_pred CCCCEEECcCCCCCccCchH---HhhccccccEEEeecCCccccCCccc--cCCCCCCEEEccCCccccccC----cccc
Q 010663 118 KKLRSLNFIGNPLDGFLPSS---IGNLSKSLETLGIANCSISGNIPPAI--SNLSNLLTLVLEGNKLTGPIP----TTFG 188 (505)
Q Consensus 118 ~~L~~L~l~~n~~~~~~~~~---~~~l~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~ 188 (505)
..++.+.+.++.++...-.. .... ++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35677777777665321111 1122 468888888888888888777 778888888888888876544 3345
Q ss_pred CCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccc--c--CccccCCCCCCceeccCccCCCCCC--c-cccC
Q 010663 189 RLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS--I--PSCLSNLTSLRFLYLGSNRFTSVIP--S-TFWR 261 (505)
Q Consensus 189 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~--~-~~~~ 261 (505)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|+.|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 677888888888888777777777888888888888876542 1 2223566777777777777653211 1 1234
Q ss_pred CCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEE
Q 010663 262 LKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMN 341 (505)
Q Consensus 262 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 341 (505)
+++|++|++++|.+.+..|..+..+. .+++|++|++++|+++ .+|..+. ++|++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~---------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCM---------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCC---------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhcc---------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 45555555555555444443333321 0135555555555555 3444432 4566666
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCcCCcCc
Q 010663 342 LSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (505)
Q Consensus 342 l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 372 (505)
+++|++++. |. +..+++|+.|++++|+++
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 666665542 22 345556666666666554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=197.94 Aligned_cols=199 Identities=20% Similarity=0.206 Sum_probs=142.0
Q ss_pred CCCCeEeccCccccccCCccC--CCCCCCCeEeccCcccccccC----ccccCCCCCCceeccCccCCCCCCccccCCCC
Q 010663 191 QKLQGLFLAFNKLVGSCPDEL--CHLDRLDKLVLLGNKFSGSIP----SCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKD 264 (505)
Q Consensus 191 ~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 264 (505)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555554 555556666666665554333 22345667777777777777666667777777
Q ss_pred CCEEEccCCccccc--c--ccccccccCCCeeecccccccccCCc----cccCCCCCcEEeCcCccccccCCccCcCC--
Q 010663 265 ILFLDFSSNLLVGT--L--SFDIGNLKVLLGINLSENNLSGDMPA----TIGGLKSLQIMDLAYNRLEGQIPESFDDL-- 334 (505)
Q Consensus 265 L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-- 334 (505)
|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .++.+++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777776542 1 122357788888888888886 2222 25778999999999999998878777776
Q ss_pred -CCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCCccCccCcccccCCcc
Q 010663 335 -TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGGIFANFTAESFMGNEL 394 (505)
Q Consensus 335 -~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~ 394 (505)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |....+.+++.+++.+|+.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 69999999999999 6777764 7999999999999963 4445678888899999984
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=8.5e-25 Score=209.69 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=94.6
Q ss_pred CCEEeccCCcccccCchhhhCC--CCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCC--CCCcccccccCCCC
Q 010663 43 VEHLNLALNRFSGTIPSSITNA--SKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSS--TSKLSFLSSLANCK 118 (505)
Q Consensus 43 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~l~ 118 (505)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +.++++|++|++++|.+.+. + ..+..++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~------~~~~~~~ 118 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH------GILSQCS 118 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH------HHHTTBC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH------HHHhhCC
Confidence 555555555544 3344444 5555566655555544443 33455555555555554321 1 3344555
Q ss_pred CCCEEECcCCCCCccCchHHhhccccccEEEeecC-Cccc-cCCccccCCCCCCEEEccCC-ccccc-cCccccCCC-CC
Q 010663 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANC-SISG-NIPPAISNLSNLLTLVLEGN-KLTGP-IPTTFGRLQ-KL 193 (505)
Q Consensus 119 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L 193 (505)
+|++|++++|.+++..+..+..+ ++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCEEeCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 55555555555554445555544 45555555555 3443 13334445555555555555 44432 334444455 55
Q ss_pred CeEeccCc--ccc-ccCCccCCCCCCCCeEeccCcc-cccccCccccCCCCCCceeccCc
Q 010663 194 QGLFLAFN--KLV-GSCPDELCHLDRLDKLVLLGNK-FSGSIPSCLSNLTSLRFLYLGSN 249 (505)
Q Consensus 194 ~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 249 (505)
++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55555555 222 2233333344444444444444 33333334444444444444444
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4.4e-25 Score=211.68 Aligned_cols=199 Identities=17% Similarity=0.265 Sum_probs=134.3
Q ss_pred CCCCEEEccCCcCCccCcccccCC--CCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCcc-CchHHhhc
Q 010663 65 SKLTLLELGGNTFSGLIPDTIGNL--RNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF-LPSSIGNL 141 (505)
Q Consensus 65 ~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l 141 (505)
..++.++++++.+. +..+..+ ++++.|++++|.+.+.+ ..+..+++|++|++++|.+.+. ++..+..+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~------~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL------AEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCC------CSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccc------hhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 35889999988776 4566666 88999999999888775 3356788889999988887755 66666666
Q ss_pred cccccEEEeecCCccccCCccccCCCCCCEEEccCC-ccccc-cCccccCCCCCCeEeccCc-ccccc-CCccCCCCC-C
Q 010663 142 SKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGN-KLTGP-IPTTFGRLQKLQGLFLAFN-KLVGS-CPDELCHLD-R 216 (505)
Q Consensus 142 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~ 216 (505)
++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 118 -~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 118 -SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp -CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred -CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 67888888888877777777777888888888887 56542 4555667777777777777 66543 344455566 6
Q ss_pred CCeEeccCc--ccc-cccCccccCCCCCCceeccCcc-CCCCCCccccCCCCCCEEEccCC
Q 010663 217 LDKLVLLGN--KFS-GSIPSCLSNLTSLRFLYLGSNR-FTSVIPSTFWRLKDILFLDFSSN 273 (505)
Q Consensus 217 L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n 273 (505)
|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 666666666 333 2344444555566666666555 44444444555555555555555
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3e-25 Score=214.78 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=127.3
Q ss_pred EECcCCCCCccCchHHhhccccccEEEeecCCccccCC----ccccCCC-CCCEEEccCCccccccCccccCC-----CC
Q 010663 123 LNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIP----PAISNLS-NLLTLVLEGNKLTGPIPTTFGRL-----QK 192 (505)
Q Consensus 123 L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 192 (505)
++++.|.+++.+|..+... ++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3444455544444333322 335555555555543333 3444444 45555555555554444333332 55
Q ss_pred CCeEeccCccccccCCccC----CCC-CCCCeEeccCcccccccCccc----cC-CCCCCceeccCccCCCCCCc----c
Q 010663 193 LQGLFLAFNKLVGSCPDEL----CHL-DRLDKLVLLGNKFSGSIPSCL----SN-LTSLRFLYLGSNRFTSVIPS----T 258 (505)
Q Consensus 193 L~~L~l~~n~~~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~----~ 258 (505)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|+.|++++|.+++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 5555555555544433322 222 455555555555554333222 22 23556666666655543222 2
Q ss_pred ccCCC-CCCEEEccCCccccccccccc----cc-cCCCeeeccccccccc----CCccccC-CCCCcEEeCcCccccccC
Q 010663 259 FWRLK-DILFLDFSSNLLVGTLSFDIG----NL-KVLLGINLSENNLSGD----MPATIGG-LKSLQIMDLAYNRLEGQI 327 (505)
Q Consensus 259 ~~~~~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~ 327 (505)
+..++ +|++|++++|.+.+..+..+. .+ ++|++|++++|.+.+. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 23333 566666666666554443332 22 4666666666666542 3333433 346777777777766543
Q ss_pred C----ccCcCCCCCCEEECcCCcCccc-------CCccccCCCCCCEEeCcCCcCccc
Q 010663 328 P----ESFDDLTSLEVMNLSNNKISGS-------IPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 328 ~----~~~~~l~~L~~L~l~~n~l~~~-------~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
+ ..+..+++|++|++++|.+.+. ++..+..+++|+.+|+++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 2345566777777777764432 223455666777777777776544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.4e-23 Score=187.46 Aligned_cols=196 Identities=19% Similarity=0.208 Sum_probs=104.1
Q ss_pred cccEEEeecCCccccCCccccCCCCCCEEEccCCc-cccccCccccCCCCCCeEeccC-ccccccCCccCCCCCCCCeEe
Q 010663 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNK-LTGPIPTTFGRLQKLQGLFLAF-NKLVGSCPDELCHLDRLDKLV 221 (505)
Q Consensus 144 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 221 (505)
+|++|++++|.+++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..|..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~------ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP------ 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC------
Confidence 45555555555554444445555555555555554 4433333444555555555554 444444334444444
Q ss_pred ccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCC---EEEccCC-ccccccccccccccCCC-eeeccc
Q 010663 222 LLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL---FLDFSSN-LLVGTLSFDIGNLKVLL-GINLSE 296 (505)
Q Consensus 222 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~ 296 (505)
+|+.|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++
T Consensus 106 ------------------~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 106 ------------------LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp ------------------TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred ------------------CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 44444444444443 222 44444444 5555555 55444444455566666 666666
Q ss_pred ccccccCCccccCCCCCcEEeCcCcc-ccccCCccCcCC-CCCCEEECcCCcCcccCCccccCCCCCCEEeCcCC
Q 010663 297 NNLSGDMPATIGGLKSLQIMDLAYNR-LEGQIPESFDDL-TSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFN 369 (505)
Q Consensus 297 n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n 369 (505)
|+++ .+|......++|++|++++|+ +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 166 n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 6665 333322222667777777774 665555666666 777777777777763 3333 4566677776655
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.4e-23 Score=186.37 Aligned_cols=197 Identities=21% Similarity=0.228 Sum_probs=142.4
Q ss_pred CCCCEEECcCCCCCccCchHHhhccccccEEEeecCC-ccccCCccccCCCCCCEEEccC-CccccccCccccCCCCCCe
Q 010663 118 KKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCS-ISGNIPPAISNLSNLLTLVLEG-NKLTGPIPTTFGRLQKLQG 195 (505)
Q Consensus 118 ~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~ 195 (505)
++|++|++++|.+++..+..+..+ ++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 489999999999997766678787 799999999997 8866667899999999999998 9999777788999999999
Q ss_pred EeccCccccccCCccCCCCCCCC---eEeccCc-ccccccCccccCCCCCC-ceeccCccCCCCCCccccCCCCCCEEEc
Q 010663 196 LFLAFNKLVGSCPDELCHLDRLD---KLVLLGN-KFSGSIPSCLSNLTSLR-FLYLGSNRFTSVIPSTFWRLKDILFLDF 270 (505)
Q Consensus 196 L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l 270 (505)
|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .|++++|.++...+..+.. ++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~------ 180 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK------ 180 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE------
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC------
Confidence 9999999986 555 77777777 8888888 77755555677777777 7777777666332222222 44
Q ss_pred cCCccccccccccccccCCCeeeccccc-ccccCCccccCC-CCCcEEeCcCccccccCCccCcCCCCCCEEECcCC
Q 010663 271 SSNLLVGTLSFDIGNLKVLLGINLSENN-LSGDMPATIGGL-KSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNN 345 (505)
Q Consensus 271 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 345 (505)
|++|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 181 ------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 ------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred ------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 4445555552 443344445555 566666666666653 3322 3556666666554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.7e-22 Score=190.49 Aligned_cols=192 Identities=25% Similarity=0.347 Sum_probs=102.3
Q ss_pred CCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCC
Q 010663 40 LPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (505)
Q Consensus 40 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~ 119 (505)
+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-------~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-------SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-------GGGTTCTT
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-------hhhcCCCC
Confidence 445555555555554 233 35555555555555555553322 55555555555555555443 23455555
Q ss_pred CCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEecc
Q 010663 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199 (505)
Q Consensus 120 L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 199 (505)
|++|++++|.+++ ++. +..+ ++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|+++
T Consensus 109 L~~L~l~~n~l~~-~~~-l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VTP-LAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD 181 (308)
T ss_dssp CCEEECTTSCCCC-CGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred CCEEECCCCCCCC-chh-hcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence 5555555555553 222 4444 455555555555553222 55556666666666665532 22 5556666666666
Q ss_pred CccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCC
Q 010663 200 FNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (505)
Q Consensus 200 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 253 (505)
+|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 666554322 5556666666666666654332 5566666666666666654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.3e-22 Score=182.25 Aligned_cols=180 Identities=23% Similarity=0.255 Sum_probs=102.5
Q ss_pred CCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceecc
Q 010663 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (505)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 247 (505)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666665 3444333 456666666666655555555555555555555555555444445555555555555
Q ss_pred CccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccC
Q 010663 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (505)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 327 (505)
+|.+++..+..|. .+++|++|++++|++++..+..+..+++|++|+|++|.+++..
T Consensus 92 ~n~l~~~~~~~~~------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFD------------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhc------------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 5555544444444 4455555555555555444444555666666666666666554
Q ss_pred CccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCccc
Q 010663 328 PESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 328 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 54566666666666666666655555666666666666666666554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.4e-22 Score=181.57 Aligned_cols=181 Identities=27% Similarity=0.336 Sum_probs=142.4
Q ss_pred ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEec
Q 010663 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (505)
...++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46789999999998 6776664 68999999999999888888999999999999999999988888999999999999
Q ss_pred cCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeeccccccccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD 302 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 302 (505)
++|++++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------------- 149 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--------------------- 149 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------------
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH---------------------
Confidence 99999987778889999999999999999877666666666666666666665543333
Q ss_pred CCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCccc
Q 010663 303 MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350 (505)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 350 (505)
.++.+++|++|+|++|++++..+..+..+++|++|++++|++.+.
T Consensus 150 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 ---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 445555566666666666555555566666666666666666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.4e-22 Score=189.51 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=100.3
Q ss_pred ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEec
Q 010663 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (505)
++|++|++++|.+.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 456666666666552 33 4556666666666666665332 2 55666666666666655532 23555555555555
Q ss_pred cCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeeccccccccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGD 302 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 302 (505)
++|++++. +. +..+++|+.|++++|.+++. .+ +..+++|++|++++|.+++.
T Consensus 115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~------------------------~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNI------------------------SP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC------------------------GG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-hh-hcCCCCCCEEECCCCccCcC------------------------cc--ccCCCCccEEEccCCcCCCC
Confidence 55555532 22 44555555555555555433 22 34444555555555555422
Q ss_pred CCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCc
Q 010663 303 MPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (505)
Q Consensus 303 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 372 (505)
+. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred -hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 22 4555555555555555553322 4555566666666666554332 555566666666666554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=4.1e-21 Score=170.42 Aligned_cols=159 Identities=24% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceecc
Q 010663 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (505)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 247 (505)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444443333333444444444444444443333333444444444444444443333333444444444444
Q ss_pred CccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccC
Q 010663 248 SNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI 327 (505)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 327 (505)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.++.|++|+++.|.++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 44444433333444444444444444444333333344444444444444332 12334444444444444444
Q ss_pred CccCcC
Q 010663 328 PESFDD 333 (505)
Q Consensus 328 ~~~~~~ 333 (505)
|..++.
T Consensus 182 p~~~~~ 187 (208)
T 2o6s_A 182 RNSAGS 187 (208)
T ss_dssp BCTTSS
T ss_pred eccCcc
Confidence 444443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.1e-20 Score=181.82 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=144.8
Q ss_pred CEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccC-ccccCCCCCCe-Eec
Q 010663 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIP-TTFGRLQKLQG-LFL 198 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l 198 (505)
++++.+++.++ .+|..+ ++++++|+|++|+++...+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555555555 455443 2467777777777764444456777777777777777654443 35666666654 445
Q ss_pred cCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccC-ccCCCCCCccccCCC-CCCEEEccCCccc
Q 010663 199 AFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS-NRFTSVIPSTFWRLK-DILFLDFSSNLLV 276 (505)
Q Consensus 199 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~ 276 (505)
..|+++...|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55666666666677777777777777777654444444555566666644 445544444555443 4667777777776
Q ss_pred cccccccccccCCCeeeccc-ccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccc
Q 010663 277 GTLSFDIGNLKVLLGINLSE-NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSM 355 (505)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 355 (505)
.. +.......+|+++++.+ |.+....+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-...+| .+
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 43 33333455677777764 4444333345677777777777777777433322 4556666666655444666 36
Q ss_pred cCCCCCCEEeCcCC
Q 010663 356 EKLFYLRELNLSFN 369 (505)
Q Consensus 356 ~~l~~L~~l~l~~n 369 (505)
.++++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777777777654
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=8e-21 Score=168.55 Aligned_cols=190 Identities=23% Similarity=0.221 Sum_probs=130.5
Q ss_pred EEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCc
Q 010663 122 SLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFN 201 (505)
Q Consensus 122 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 201 (505)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4445555444 333322 245677777777766555555667777777777777777555555677777777777777
Q ss_pred cccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccccccc
Q 010663 202 KLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSF 281 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 281 (505)
.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 7776666666777778888887777776655567777888888888888877666667778888888888886653
Q ss_pred ccccccCCCeeecccccccccCCccccCCCCCcEEeCcCcccccc
Q 010663 282 DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326 (505)
Q Consensus 282 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 326 (505)
.++.|++|+++.|+++|.+|..++.++. ++..|...+.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~ 200 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGK 200 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCC
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCC
Confidence 4567888888888888888888776654 3444444333
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.7e-20 Score=178.99 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=192.1
Q ss_pred ccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCC-ccCCCCCCCCe-Eec
Q 010663 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCP-DELCHLDRLDK-LVL 222 (505)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~-L~l 222 (505)
-++++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|.+.+.++ ..|.+++++.+ +.+
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 467888888888 778766 4689999999999996666789999999999999999877665 56888998876 556
Q ss_pred cCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccC-Ccccccccccccccc-CCCeeeccccccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS-NLLVGTLSFDIGNLK-VLLGINLSENNLS 300 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~~~ 300 (505)
..|+++...|..|..+++|+.|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67899988888999999999999999999988777777788888999976 456555555566654 6889999999998
Q ss_pred ccCCccccCCCCCcEEeCcC-ccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCCCC
Q 010663 301 GDMPATIGGLKSLQIMDLAY-NRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPSGG 379 (505)
Q Consensus 301 ~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~~~ 379 (505)
.+|.......+|+.|++++ |.++...+..|..+++|++|++++|+++. +|.. .+..|+.|.+.++.-...+|...
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCCTT
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCCch
Confidence 4555554667899999986 55554444578999999999999999994 4442 35677888877777667888766
Q ss_pred ccCccCcccccCCccCC
Q 010663 380 IFANFTAESFMGNELLC 396 (505)
Q Consensus 380 ~~~~~~~~~~~~n~~lc 396 (505)
.+.++....+. +++.|
T Consensus 244 ~l~~L~~l~l~-~~~~c 259 (350)
T 4ay9_X 244 KLVALMEASLT-YPSHC 259 (350)
T ss_dssp TCCSCCEEECS-CHHHH
T ss_pred hCcChhhCcCC-CCccc
Confidence 67777766653 45444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.3e-20 Score=188.67 Aligned_cols=187 Identities=22% Similarity=0.307 Sum_probs=97.8
Q ss_pred cccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEecc
Q 010663 144 SLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLL 223 (505)
Q Consensus 144 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 223 (505)
+|+.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 44333 244555555555554 333 234555555555555554 333 332 55555555
Q ss_pred CcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccC
Q 010663 224 GNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDM 303 (505)
Q Consensus 224 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 303 (505)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+.+ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 555553 333 34555555555555554 232 34555555555555554 333 33 55566666666555 44
Q ss_pred CccccCCCCC-------cEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCC
Q 010663 304 PATIGGLKSL-------QIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKL 358 (505)
Q Consensus 304 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 358 (505)
|. +.. +| +.|+|++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 44 332 44 66777777666 456656666777777777777766666655443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5.2e-20 Score=186.05 Aligned_cols=183 Identities=24% Similarity=0.311 Sum_probs=157.5
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceec
Q 010663 167 SNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYL 246 (505)
Q Consensus 167 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 246 (505)
.+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999996 77655 389999999999998 566 457999999999999996 777 654 9999999
Q ss_pred cCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCcccccc
Q 010663 247 GSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQ 326 (505)
Q Consensus 247 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 326 (505)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9999998 555 68999999999999986 554 57899999999999996 777 65 89999999999999 6
Q ss_pred CCccCcCCCCC-------CEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCCC
Q 010663 327 IPESFDDLTSL-------EVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIPS 377 (505)
Q Consensus 327 ~~~~~~~l~~L-------~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p~ 377 (505)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 666 554 77 99999999999 6888888899999999999999988774
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=4.9e-20 Score=188.38 Aligned_cols=191 Identities=28% Similarity=0.416 Sum_probs=138.6
Q ss_pred CCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEec
Q 010663 17 TLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (505)
Q Consensus 17 ~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 96 (505)
.+..++++.+.+.+.++ .. .+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~-~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QN-ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HH-HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hh-cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34455566666653332 22 4778888888888876 344 57788888888888888876544 778888888888
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccC
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEG 176 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 176 (505)
++|.+.+.+ .+..+++|+.|+|++|.+.+ + ..+..+ ++|+.|+|++|.+++. ..+..+++|+.|+|++
T Consensus 95 s~N~l~~l~-------~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 95 DENKIKDLS-------SLKDLKKLKSLSLEHNGISD-I-NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CSSCCCCCT-------TSTTCTTCCEEECTTSCCCC-C-GGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred cCCCCCCCh-------hhccCCCCCEEEecCCCCCC-C-ccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 888877653 46778888888888888774 3 346665 6788888888887754 5677788888888888
Q ss_pred CccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccc
Q 010663 177 NKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGS 230 (505)
Q Consensus 177 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 230 (505)
|.+++..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88876555 77888888888888887754 3577788888888888877753
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.5e-19 Score=184.79 Aligned_cols=177 Identities=25% Similarity=0.365 Sum_probs=154.7
Q ss_pred hhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCC
Q 010663 12 IFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNL 91 (505)
Q Consensus 12 ~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 91 (505)
+..+++|+.|++++|.+. .+| .+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. | .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC
Confidence 678999999999999998 776 466 79999999999999985544 99999999999999999863 3 69999999
Q ss_pred CEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCE
Q 010663 92 AWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLT 171 (505)
Q Consensus 92 ~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 171 (505)
+.|+|++|.+... ..+..+++|+.|+|++|.+.+. ..+..+ ++|+.|+|++|.+.+..| +..+++|+.
T Consensus 112 ~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp CEEECTTSCCCCC-------GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CEEEecCCCCCCC-------ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 9999999999876 4588999999999999999865 567777 799999999999997655 899999999
Q ss_pred EEccCCccccccCccccCCCCCCeEeccCccccccCCc
Q 010663 172 LVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPD 209 (505)
Q Consensus 172 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 209 (505)
|+|++|.+++. | .+..+++|+.|+|++|.+.+....
T Consensus 180 L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 180 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred EECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCccc
Confidence 99999999864 4 589999999999999999865433
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=9.2e-20 Score=170.26 Aligned_cols=187 Identities=29% Similarity=0.432 Sum_probs=133.7
Q ss_pred EEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCc
Q 010663 20 IIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYN 99 (505)
Q Consensus 20 ~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 99 (505)
.+.+..+.+.+.++. . .+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|
T Consensus 28 ~~~l~~~~~~~~~~~--~-~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQ--N-ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSEECH--H-HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHhcCCCcccccch--h-hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 344555555422222 2 4677888888887776 333 47777888888888888776544 777888888888888
Q ss_pred cccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCcc
Q 010663 100 NLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKL 179 (505)
Q Consensus 100 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 179 (505)
.+++.+ .+..+++|++|++++|.+.+. ..+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 101 ~l~~~~-------~l~~l~~L~~L~L~~n~i~~~--~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 101 KVKDLS-------SLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CCCCGG-------GGTTCTTCCEEECTTSCCCCC--GGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred cCCCCh-------hhccCCCCCEEECCCCcCCCC--hhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 776653 477778888888888877743 345665 6788888888887754 5677888888888888888
Q ss_pred ccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCccccc
Q 010663 180 TGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSG 229 (505)
Q Consensus 180 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 229 (505)
++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 76544 77888888888888888753 3 47788888888888888774
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=164.66 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=107.5
Q ss_pred eEeccCcccccccCccccCCCCCCceeccCccCCCCCC-ccccCCCCCCEEEccCCccccccccccccccCCCeeecccc
Q 010663 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIP-STFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297 (505)
Q Consensus 219 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 297 (505)
.+++++|.++ .+|..+. +.++.|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 3443332 334566666666665533 34566666666777666666666666677777777777777
Q ss_pred cccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 298 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7776666667777888888888888887777778888888888888888887777788888888888888888876654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.5e-19 Score=167.34 Aligned_cols=188 Identities=29% Similarity=0.328 Sum_probs=115.8
Q ss_pred CEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEE
Q 010663 44 EHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSL 123 (505)
Q Consensus 44 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L 123 (505)
..+.+..+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|.+++.+ . +..+++|++|
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~------~-l~~l~~L~~L 95 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK------P-LANLKNLGWL 95 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEE
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc------c-cccCCCCCEE
Confidence 33344444444322 234566677777777766643 2 3666677777777777666553 2 5666777777
Q ss_pred ECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccc
Q 010663 124 NFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKL 203 (505)
Q Consensus 124 ~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 203 (505)
++++|.+++ ++ .+..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 96 ~l~~n~l~~-~~-~l~~l-~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 96 FLDENKVKD-LS-SLKDL-KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ECCSSCCCC-GG-GGTTC-TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ECCCCcCCC-Ch-hhccC-CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 777776663 22 35555 5677777777766642 3566667777777777776643 4566677777777777766
Q ss_pred cccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCC
Q 010663 204 VGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTS 253 (505)
Q Consensus 204 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 253 (505)
.+..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+..
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 65443 6666777777777776664 33 26666777777777776654
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.1e-19 Score=162.21 Aligned_cols=153 Identities=22% Similarity=0.299 Sum_probs=92.4
Q ss_pred eEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeeccccc
Q 010663 219 KLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENN 298 (505)
Q Consensus 219 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 298 (505)
.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+.+..|..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 3333222 345555555555555444455555555555555555555555555666666666666666
Q ss_pred ccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCccc
Q 010663 299 LSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGE 374 (505)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 374 (505)
++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6644444456667777777777777766666677777777777777777766666666777777777777776543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.8e-19 Score=170.36 Aligned_cols=176 Identities=23% Similarity=0.220 Sum_probs=93.3
Q ss_pred CEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCC-CCCCCCeEeccCcccccccCccccCCCCCCceeccC
Q 010663 170 LTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELC-HLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (505)
Q Consensus 170 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 248 (505)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666666 3454332 3466666666666655555555 566666666666666655555555555666666666
Q ss_pred ccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCC
Q 010663 249 NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIP 328 (505)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 328 (505)
|.+++..+..|..+++|+.|+|++|.+.+.. |..|..+++|+.|+|++|.+++..+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD------------------------RNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------------------TTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEEC------------------------HHHhCCcccCCEEECCCCcCCeeCH
Confidence 5555544444555555555555555554444 4444445555555555555543222
Q ss_pred ccC---cCCCCCCEEECcCCcCcccCCccccCCCC--CCEEeCcCCcCc
Q 010663 329 ESF---DDLTSLEVMNLSNNKISGSIPKSMEKLFY--LRELNLSFNELE 372 (505)
Q Consensus 329 ~~~---~~l~~L~~L~l~~n~l~~~~p~~l~~l~~--L~~l~l~~n~l~ 372 (505)
..+ ..+++|+.|+|++|++++..+..+..++. ++.|++++|++.
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 222 34555555555555555433344444444 255555555554
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.8e-18 Score=155.58 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=96.4
Q ss_pred CeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccc
Q 010663 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSEN 297 (505)
Q Consensus 218 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 297 (505)
+.++.+++.+. .+|..+. ++|+.|++++|.+++..+..|..+++|+.|+|++|.+....+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34455444444 3343222 45555666665555555555555566666666666655444444556666666666666
Q ss_pred cccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 298 NLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 298 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666555555666777777777777776 566666777777777777777776555667777777777777777765544
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.9e-18 Score=154.31 Aligned_cols=133 Identities=23% Similarity=0.284 Sum_probs=62.2
Q ss_pred CCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEcc
Q 010663 192 KLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFS 271 (505)
Q Consensus 192 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 271 (505)
+|+.|++++|.+.+..+..+..+++|++|++++|++++..|..|..+++|+.|++++|.++...+..
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------------- 99 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL------------- 99 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT-------------
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH-------------
Confidence 4444444444444333334444444444444444444333444444444444444444444333223
Q ss_pred CCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCc
Q 010663 272 SNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (505)
Q Consensus 272 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 348 (505)
+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+.
T Consensus 100 -----------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 100 -----------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -----------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 333444444444444444444444555555555555555555444445555556666666666554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=8.7e-19 Score=169.13 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=76.4
Q ss_pred cccEEEeecCCccccCCcccc-CCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEec
Q 010663 144 SLETLGIANCSISGNIPPAIS-NLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (505)
Q Consensus 144 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (505)
.++.|+|++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|.++...+..|..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 344455555554444444443 4555555555555555444444555555555555555555444444555555555555
Q ss_pred cCcccccccCccccCCCCCCceeccCccCCCCCCccc---cCCCCCCEEEccCCccccccccccccccC--CCeeecccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTF---WRLKDILFLDFSSNLLVGTLSFDIGNLKV--LLGINLSEN 297 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n 297 (505)
++|++++..|..|..+++|+.|++++|.+++..+..| ..+++|+.|+|++|.+.+..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555554444455555555555555555554333333 33455555555555555433334444443 244555555
Q ss_pred ccc
Q 010663 298 NLS 300 (505)
Q Consensus 298 ~~~ 300 (505)
.+.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1e-21 Score=199.73 Aligned_cols=120 Identities=22% Similarity=0.213 Sum_probs=60.7
Q ss_pred ccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccC
Q 010663 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLG 224 (505)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 224 (505)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4455555555542 333 455555555555555555 444455555555555555555553 33 455555555555555
Q ss_pred ccccccc-CccccCCCCCCceeccCccCCCCCCc---cccCCCCCCEEE
Q 010663 225 NKFSGSI-PSCLSNLTSLRFLYLGSNRFTSVIPS---TFWRLKDILFLD 269 (505)
Q Consensus 225 n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~ 269 (505)
|++++.. |..+..+++|+.|++++|.+++.++. .+..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5555443 55555555555555555555544332 122355565554
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=153.34 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=33.3
Q ss_pred cCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCE
Q 010663 188 GRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILF 267 (505)
Q Consensus 188 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 267 (505)
..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 33344444444444333333333333333334444333333333333333333333333333333333333333333333
Q ss_pred EEccCCcc
Q 010663 268 LDFSSNLL 275 (505)
Q Consensus 268 L~l~~n~l 275 (505)
|++++|++
T Consensus 134 L~L~~N~l 141 (220)
T 2v70_A 134 LSLYDNQI 141 (220)
T ss_dssp EECTTSCC
T ss_pred EECCCCcC
Confidence 33333333
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=8.3e-18 Score=151.18 Aligned_cols=136 Identities=27% Similarity=0.324 Sum_probs=90.1
Q ss_pred CCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeec
Q 010663 215 DRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINL 294 (505)
Q Consensus 215 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 294 (505)
++|++|++++|.+++..|..+..+++|+.|++++|.+....+..|..+++|+.|+|++|.+.+..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444555555555555555555555444444555566666666666665555555566677777777
Q ss_pred ccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccC
Q 010663 295 SENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSI 351 (505)
Q Consensus 295 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 351 (505)
++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+....
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777776 66777778888888888888888666677888888888888888887544
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8.9e-19 Score=160.93 Aligned_cols=169 Identities=24% Similarity=0.278 Sum_probs=91.7
Q ss_pred cCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCE
Q 010663 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (505)
Q Consensus 14 ~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 93 (505)
++.++..++++.+.++ .++ .+. .+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3444555566666665 444 333 4666666666666665 344 56666666666666666664433 666666666
Q ss_pred EeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEE
Q 010663 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (505)
Q Consensus 94 L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 173 (505)
|++++|.+++.+. +.. ++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 90 L~L~~N~l~~l~~-------~~~-~~L~~L~L~~N~l~~-~~--------------------------~l~~l~~L~~L~ 134 (263)
T 1xeu_A 90 LSVNRNRLKNLNG-------IPS-ACLSRLFLDNNELRD-TD--------------------------SLIHLKNLEILS 134 (263)
T ss_dssp EECCSSCCSCCTT-------CCC-SSCCEEECCSSCCSB-SG--------------------------GGTTCTTCCEEE
T ss_pred EECCCCccCCcCc-------ccc-CcccEEEccCCccCC-Ch--------------------------hhcCcccccEEE
Confidence 6666666655431 112 555555555555543 11 244445555555
Q ss_pred ccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccc
Q 010663 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFS 228 (505)
Q Consensus 174 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 228 (505)
+++|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 135 Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 135 IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 555555432 2 344555555555555555443 34555555555555555555
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=8.2e-18 Score=147.56 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=66.8
Q ss_pred ccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEec
Q 010663 143 KSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVL 222 (505)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 222 (505)
++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45666666666555 334 4555566666666666443 1224555555555555555555545555555555555555
Q ss_pred cCcccccccCccccCCCCCCceeccCcc-CCCCCCccccCCCCCCEEEccCCccc
Q 010663 223 LGNKFSGSIPSCLSNLTSLRFLYLGSNR-FTSVIPSTFWRLKDILFLDFSSNLLV 276 (505)
Q Consensus 223 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~ 276 (505)
++|.+++..+..+..+++|+.|++++|. ++. ++ .+..+++|+.|++++|.+.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc
Confidence 5555555444555555555555555554 322 22 3444444444444444443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.4e-18 Score=150.06 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=100.7
Q ss_pred ccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCC
Q 010663 163 ISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLR 242 (505)
Q Consensus 163 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 242 (505)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356778888999988887 455 5788888888888888654 234677788888888888887776677777777777
Q ss_pred ceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCcc
Q 010663 243 FLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNR 322 (505)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 322 (505)
.|++++|.+++..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 77777777776666666666777777776665222333 34455555555555555542 22 34444455555555544
Q ss_pred c
Q 010663 323 L 323 (505)
Q Consensus 323 l 323 (505)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6e-21 Score=193.98 Aligned_cols=218 Identities=21% Similarity=0.145 Sum_probs=136.2
Q ss_pred cCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCC
Q 010663 114 LANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKL 193 (505)
Q Consensus 114 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 193 (505)
+..+++|+.|++++|.+. .+|..++.+ ++|++|++++|......|..+ ..+...+..|..++.+++|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhc
Confidence 356677777777777775 667777776 567777775443111111110 1112344556666667777
Q ss_pred CeEe-ccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccC
Q 010663 194 QGLF-LAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSS 272 (505)
Q Consensus 194 ~~L~-l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 272 (505)
+.|+ ++.|.+. .|..+.+++|.++.. |. ..|+.|++++|.+++ +|. +..+++|+.|++++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH 472 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS
T ss_pred ccCcchhhcccc-----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCc
Confidence 7776 4544332 233445555555432 21 136667777777765 344 66777777777777
Q ss_pred CccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccC-CccCcCCCCCCEEECcCCcCcccC
Q 010663 273 NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQI-PESFDDLTSLEVMNLSNNKISGSI 351 (505)
Q Consensus 273 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 351 (505)
|.+. .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.+++|+.|++++|++++..
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7776 556677777777777777777774 55 6777777888888888777665 777777888888888888877654
Q ss_pred Ccc---ccCCCCCCEEeC
Q 010663 352 PKS---MEKLFYLRELNL 366 (505)
Q Consensus 352 p~~---l~~l~~L~~l~l 366 (505)
|.. +..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 432 234677777753
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=6e-18 Score=161.13 Aligned_cols=103 Identities=16% Similarity=0.015 Sum_probs=70.8
Q ss_pred CCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCC-ceeccCccCCCCCCccccCCCCCCEE
Q 010663 190 LQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLR-FLYLGSNRFTSVIPSTFWRLKDILFL 268 (505)
Q Consensus 190 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L 268 (505)
+++|+.+++++|.++...+..|.++.+|+++++.+| +....+.+|..+++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 667777777776666555566777777777777765 5545555677777777 777766 5665566677777777777
Q ss_pred EccCCccccccccccccccCCCeeec
Q 010663 269 DFSSNLLVGTLSFDIGNLKVLLGINL 294 (505)
Q Consensus 269 ~l~~n~l~~~~~~~~~~~~~L~~L~l 294 (505)
+++.|.+....+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 77777776666667777777776653
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.2e-17 Score=151.58 Aligned_cols=152 Identities=24% Similarity=0.298 Sum_probs=124.0
Q ss_pred hhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCC
Q 010663 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (505)
Q Consensus 11 ~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 90 (505)
.+.++++|++|++++|.++ .+| .+. .+++|++|++++|.+++. +. +.++++|++|++++|.+++. |. +.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNL-NG-IPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCC-TT-CCC-SS
T ss_pred chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCc-Cc-ccc-Cc
Confidence 6889999999999999998 788 566 799999999999999854 44 99999999999999999974 43 333 99
Q ss_pred CCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCC
Q 010663 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (505)
Q Consensus 91 L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 170 (505)
|++|++++|.+++. ..+..+++|++|++++|.+++. + .+..+ ++|++|++++|.+++. ..+..+++|+
T Consensus 108 L~~L~L~~N~l~~~-------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 108 LSRLFLDNNELRDT-------DSLIHLKNLEILSIRNNKLKSI-V-MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CCEEECCSSCCSBS-------GGGTTCTTCCEEECTTSCCCBC-G-GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred ccEEEccCCccCCC-------hhhcCcccccEEECCCCcCCCC-h-HHccC-CCCCEEECCCCcCcch--HHhccCCCCC
Confidence 99999999999876 3588899999999999998853 3 45665 6788888888877754 5566777777
Q ss_pred EEEccCCccccc
Q 010663 171 TLVLEGNKLTGP 182 (505)
Q Consensus 171 ~L~l~~n~~~~~ 182 (505)
.|++++|.+++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 777777776643
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=2.7e-18 Score=180.03 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=122.1
Q ss_pred ccchhhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCccccc
Q 010663 7 MVSATIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIG 86 (505)
Q Consensus 7 ~~~~~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 86 (505)
..|..|..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 44677889999999999999998 8998888 7999999999999998 88989999999999999999998 6788899
Q ss_pred CCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCC
Q 010663 87 NLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNL 166 (505)
Q Consensus 87 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 166 (505)
++++|++|+|++|.++.+| ..+..+++|++|+|++|.+++.+|..+......+..+++++|.+++.+|..
T Consensus 291 ~l~~L~~L~L~~N~l~~lp------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---- 360 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLP------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---- 360 (727)
T ss_dssp GGTTCSEEECCSSCCCCCC------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred CCCCCCEEECCCCCCCccC------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence 9999999999999998777 568889999999999999998888888765334455788899988877764
Q ss_pred CCCCEEEccCC--------ccccccCccccCCCCCCeEeccCcccc
Q 010663 167 SNLLTLVLEGN--------KLTGPIPTTFGRLQKLQGLFLAFNKLV 204 (505)
Q Consensus 167 ~~L~~L~l~~n--------~~~~~~~~~l~~l~~L~~L~l~~n~~~ 204 (505)
|+.|+++.| .+.+..+..+..+..++...+++|-+.
T Consensus 361 --l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 --RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------------CCC
T ss_pred --cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 445566655 222233333444455555555555543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=8.7e-18 Score=146.60 Aligned_cols=113 Identities=29% Similarity=0.337 Sum_probs=59.2
Q ss_pred CCCEEEccCCcccccccc-ccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEEC
Q 010663 264 DILFLDFSSNLLVGTLSF-DIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL 342 (505)
Q Consensus 264 ~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 342 (505)
+++.|++++|.+.+..+. .+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 344444444444433332 2444555555555555555444555555555555555555555555555555555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 343 SNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 343 ~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
++|++++..|..+..+++|++|++++|++.+..+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 5555555555555555555555555555555443
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5.4e-18 Score=161.46 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCc-EEeCcCccccccCCccCcCCCCCCEE
Q 010663 262 LKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQ-IMDLAYNRLEGQIPESFDDLTSLEVM 340 (505)
Q Consensus 262 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L 340 (505)
+++|+.+++++|++.......|.+|++|+.+++.+| +....+..|.+|++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555555555444445555555555555554 4434444556666666 666655 4544445566666666666
Q ss_pred ECcCCcCcccCCccccCCCCCCEEe
Q 010663 341 NLSNNKISGSIPKSMEKLFYLRELN 365 (505)
Q Consensus 341 ~l~~n~l~~~~p~~l~~l~~L~~l~ 365 (505)
++++|+++...+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666655555666666666654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.7e-18 Score=181.55 Aligned_cols=217 Identities=21% Similarity=0.181 Sum_probs=107.4
Q ss_pred CCCcEEEcccccccccCchhhhcCCCCCCEEec-----cCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCC
Q 010663 16 STLKIIILINNSLSGSLPSRIGLSLPTVEHLNL-----ALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (505)
Q Consensus 16 ~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l-----~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 90 (505)
+.++.|+|+++.+. .++..+. ....|..+.+ ..|.+. ..+..+..+.+|+.|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALL-QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCC-cchhhHh-hcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 55778888888877 4555443 3333333332 233333 45677888888888888888887 56666668888
Q ss_pred CCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCC
Q 010663 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (505)
Q Consensus 91 L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 170 (505)
|++|+|++|.++.+| ..+.++++|++|+|++|.++ .+|..+..+ ++|++|+|++|.++ .+|..|+.+++|+
T Consensus 249 L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 249 LTRLYLNGNSLTELP------AEIKNLSNLRVLDLSHNRLT-SLPAELGSC-FQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp CSCCBCTTSCCSCCC------GGGGGGTTCCEEECTTSCCS-SCCSSGGGG-TTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred CCEEEeeCCcCcccC------hhhhCCCCCCEEeCcCCcCC-ccChhhcCC-CCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence 888888888888666 56778888888888888888 678888777 67888888888886 6777788888888
Q ss_pred EEEccCCccccccCccccCCCC-CCeEeccCccccccCCccCCCCCCCCeEeccCc--------ccccccCccccCCCCC
Q 010663 171 TLVLEGNKLTGPIPTTFGRLQK-LQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGN--------KFSGSIPSCLSNLTSL 241 (505)
Q Consensus 171 ~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~~~~l~~L 241 (505)
+|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.. |..|+++.| .+.+..+..+..+..+
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~ 393 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKR 393 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhccccc
Confidence 8888888888777776654322 234677888887777653 344555555 2222223333444444
Q ss_pred CceeccCccC
Q 010663 242 RFLYLGSNRF 251 (505)
Q Consensus 242 ~~L~l~~n~~ 251 (505)
+...++.|-+
T Consensus 394 ~~~~ls~Nil 403 (727)
T 4b8c_D 394 TFTVLSYNTL 403 (727)
T ss_dssp --------CC
T ss_pred ceeeeecccc
Confidence 5555555544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=9.5e-17 Score=140.00 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=98.3
Q ss_pred CeEeccCcccccccCccccCCCCCCceeccCccCCCCCCc-cccCCCCCCEEEccCCccccccccccccccCCCeeeccc
Q 010663 218 DKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPS-TFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSE 296 (505)
Q Consensus 218 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 296 (505)
+.+++++|.++ .+|..+. .+++.|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666654 4454333 2667777777777665553 366777777777777777777777777788888888888
Q ss_pred ccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCC
Q 010663 297 NNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIP 352 (505)
Q Consensus 297 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 352 (505)
|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777778888888888888888888888888888889999999998886554
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.9e-15 Score=147.55 Aligned_cols=316 Identities=15% Similarity=0.098 Sum_probs=170.4
Q ss_pred cCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCccc
Q 010663 31 SLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSF 110 (505)
Q Consensus 31 ~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 110 (505)
+|....+..|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++ ++.+...+|.++.+|+.+.+..+ +.....
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~---- 133 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV---- 133 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT----
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc----
Confidence 455555546666666666533 44333456666666666666543 44344555666666666555433 222211
Q ss_pred ccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCC
Q 010663 111 LSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRL 190 (505)
Q Consensus 111 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 190 (505)
.++.++..+........ ...-...|..+ ++|+.+.+..+.. ......|.++.+|+.+++..+ ++......|.++
T Consensus 134 -~aF~~~~~~~~~~~~~~--~~i~~~aF~~c-~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 134 -EAFKGCDFKEITIPEGV--TVIGDEAFATC-ESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp -TTTTTCCCSEEECCTTC--CEECTTTTTTC-TTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred -eeeecccccccccCccc--cccchhhhccc-CCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 33444433222222211 11122334443 4566666654432 233445666667776666554 333444556666
Q ss_pred CCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEc
Q 010663 191 QKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDF 270 (505)
Q Consensus 191 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 270 (505)
..|+.+.+..+... +.+.......|+.+.+... ++......+..+..|+.+.+..+.. ......|..+..++.+..
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceecc
Confidence 66766666554322 2233334456666666543 2223344556666677776665432 234455666666666666
Q ss_pred cCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCccc
Q 010663 271 SSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGS 350 (505)
Q Consensus 271 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 350 (505)
..+.+. ...+..+.+|+.+.+..+ +.......|.+|.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++..
T Consensus 284 ~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 284 GSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp CSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred Cceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 554322 234556667777776544 43344455677777777777543 54444567777777777777655 5544
Q ss_pred CCccccCCCCCCEEeCcCC
Q 010663 351 IPKSMEKLFYLRELNLSFN 369 (505)
Q Consensus 351 ~p~~l~~l~~L~~l~l~~n 369 (505)
-...|.++.+|+.+++..+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG
T ss_pred hHHHhhCCCCCCEEEECCC
Confidence 4567777777777776543
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=3.7e-15 Score=144.83 Aligned_cols=266 Identities=15% Similarity=0.072 Sum_probs=176.3
Q ss_pred cCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCE
Q 010663 14 NMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAW 93 (505)
Q Consensus 14 ~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 93 (505)
.+..++.+.+..+ ++ .|+...+.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .++.+.+.+|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3466666666553 44 5666655454 6777777655 554445566664 577777775 556566677777777777
Q ss_pred EeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEE
Q 010663 94 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLV 173 (505)
Q Consensus 94 L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 173 (505)
+++..|.++.++. ..|. +.+|+.+.+..+ +...-...|..+ ++|+.+++..+ ++..-...|.+ .+|+.+.
T Consensus 185 l~l~~n~l~~I~~-----~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 185 ADLSKTKITKLPA-----STFV-YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp EECTTSCCSEECT-----TTTT-TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred eecCCCcceEech-----hhEe-ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 7777777776643 3343 567777777644 543444455554 57777777754 44344455555 6788887
Q ss_pred ccCCccccccCccccCCCCCCeEeccCcccc-----ccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccC
Q 010663 174 LEGNKLTGPIPTTFGRLQKLQGLFLAFNKLV-----GSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGS 248 (505)
Q Consensus 174 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 248 (505)
+. +.++......|..|++|+.+.+.+|.+. ...+..|..|++|+.+++.+ .+...-..+|..+++|+.+.+..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 73 4455455667778888888887776654 34456777888888888874 46655566788888888888865
Q ss_pred ccCCCCCCccccCCCCCCEEEccCCcccccccccccccc-CCCeeecccccc
Q 010663 249 NRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLK-VLLGINLSENNL 299 (505)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~ 299 (505)
+ ++.....+|.++ +|+.+++.+|.........+..++ .++.|++..+.+
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4 565666778888 888888888877666666666663 677788777654
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=6.8e-15 Score=142.97 Aligned_cols=265 Identities=8% Similarity=0.085 Sum_probs=133.1
Q ss_pred CCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCC
Q 010663 41 PTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL 120 (505)
Q Consensus 41 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L 120 (505)
..++.+.+.. .++..-..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+.. .+|.+|++|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-----~aF~~c~~L 182 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-----DIFYYCYNL 182 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-----STTTTCTTC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-----HHhhCcccC
Confidence 4455555433 2332333444443 4555555443 443444445443 355555543 3333321 345555555
Q ss_pred CEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccC
Q 010663 121 RSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAF 200 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 200 (505)
+.+++..|.++.. + ...|. +.+|+.+.+..+ ++......|..+++|+.+.+..
T Consensus 183 ~~l~l~~n~l~~I-~------------------------~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 183 KKADLSKTKITKL-P------------------------ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CEEECTTSCCSEE-C------------------------TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CeeecCCCcceEe-c------------------------hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 5555555544422 2 22222 344444444422 3333334444444555554443
Q ss_pred ccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCC-----CCCCccccCCCCCCEEEccCCcc
Q 010663 201 NKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFT-----SVIPSTFWRLKDILFLDFSSNLL 275 (505)
Q Consensus 201 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l 275 (505)
+ ++..-..+|.+ .+|+.+.+. +.++..-+.+|..+++|+.+++.++.+. ...+..|..|++|+.+++.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 2 22222333333 445555552 2333333444555555555555554433 23445566666666666663 35
Q ss_pred ccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCC-CCCEEECcCCcCc
Q 010663 276 VGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLT-SLEVMNLSNNKIS 348 (505)
Q Consensus 276 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 348 (505)
.......|.+|++|+.+.+..+ ++......|.++ +|+.+++++|......+..|.+++ .++.|.+..+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 4445556666777777777544 444455667777 788888877776655556666664 6777777666543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.2e-16 Score=133.67 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccccc-ccccccccCCCeeecccccccccCC---ccccCCCCC
Q 010663 238 LTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL-SFDIGNLKVLLGINLSENNLSGDMP---ATIGGLKSL 313 (505)
Q Consensus 238 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L 313 (505)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 333333333333333333333333344444444444443321 1334444555555555555543322 245555555
Q ss_pred cEEeCcCcccc
Q 010663 314 QIMDLAYNRLE 324 (505)
Q Consensus 314 ~~L~l~~n~l~ 324 (505)
++|++++|.+.
T Consensus 150 ~~L~l~~n~~~ 160 (168)
T 2ell_A 150 TYLDGYDREDQ 160 (168)
T ss_dssp CEETTEETTSC
T ss_pred cEecCCCCChh
Confidence 66665555554
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.6e-16 Score=132.68 Aligned_cols=132 Identities=25% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCeEeccCcccc-cccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeee
Q 010663 215 DRLDKLVLLGNKFS-GSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGIN 293 (505)
Q Consensus 215 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 293 (505)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 44454455555555555555555543 4455555666666666666554555555556666666
Q ss_pred cccccccccC-CccccCCCCCcEEeCcCccccccCC---ccCcCCCCCCEEECcCCcCc
Q 010663 294 LSENNLSGDM-PATIGGLKSLQIMDLAYNRLEGQIP---ESFDDLTSLEVMNLSNNKIS 348 (505)
Q Consensus 294 l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 348 (505)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666555321 1445555666666666666554333 24555566666666665554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2.7e-16 Score=131.20 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCCeEeccCcccc-ccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCC
Q 010663 192 KLQGLFLAFNKLV-GSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFT 252 (505)
Q Consensus 192 ~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 252 (505)
+|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc
Confidence 3444444444443 33333334444444444444443322 22333333333333333333
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6.9e-16 Score=128.69 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=42.1
Q ss_pred CCCCEEEccCCccc-cccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCcee
Q 010663 167 SNLLTLVLEGNKLT-GPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLY 245 (505)
Q Consensus 167 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 245 (505)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44444445555555555555555433 3444555555555555555544444444444444444
Q ss_pred ccCccCCC
Q 010663 246 LGSNRFTS 253 (505)
Q Consensus 246 l~~n~~~~ 253 (505)
+++|.+++
T Consensus 95 ls~N~i~~ 102 (149)
T 2je0_A 95 LSGNKIKD 102 (149)
T ss_dssp CTTSCCCS
T ss_pred CCCCcCCC
Confidence 44444443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=133.44 Aligned_cols=112 Identities=29% Similarity=0.363 Sum_probs=75.7
Q ss_pred CCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEEC
Q 010663 263 KDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNL 342 (505)
Q Consensus 263 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 342 (505)
++++.|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35555555555554 34455566666666666666666555566777777777777777777666667777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEeCcCCcCcccC
Q 010663 343 SNNKISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (505)
Q Consensus 343 ~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 375 (505)
++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 777777555556777777777777777776543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.8e-15 Score=128.10 Aligned_cols=132 Identities=24% Similarity=0.271 Sum_probs=87.2
Q ss_pred CceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCc
Q 010663 242 RFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYN 321 (505)
Q Consensus 242 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 321 (505)
+.++++++.++.. |..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4444555544432 2221 245566666666665555555566666777777777776555555677777888888888
Q ss_pred cccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 322 RLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 322 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8776666667778888888888888876555556777888888888888776655
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=8.4e-15 Score=127.53 Aligned_cols=107 Identities=25% Similarity=0.372 Sum_probs=45.6
Q ss_pred CCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceecc
Q 010663 168 NLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLG 247 (505)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 247 (505)
+|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444443 233334444444444444444443333344444444444444444443333344444444444444
Q ss_pred CccCCCCCCccccCCCCCCEEEccCCcc
Q 010663 248 SNRFTSVIPSTFWRLKDILFLDFSSNLL 275 (505)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l 275 (505)
+|.++...+..|..+++|+.|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444433333344444444444444443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.2e-14 Score=125.08 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=67.8
Q ss_pred ccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccC
Q 010663 145 LETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLG 224 (505)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 224 (505)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 344555555444 233222 24555555555555544444455555555555555555544444455555555555555
Q ss_pred cccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccc
Q 010663 225 NKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVG 277 (505)
Q Consensus 225 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 277 (505)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55554444445555555555555555554444444555555555555555543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=1.1e-13 Score=135.04 Aligned_cols=310 Identities=10% Similarity=0.042 Sum_probs=131.1
Q ss_pred hhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCC
Q 010663 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (505)
Q Consensus 11 ~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 90 (505)
+|.+|++|+.+.+..+ ++ .|.+..+.+|.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ +......+|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 4555555555555432 33 444444444555555555433 33222344555555555444322 22233334444433
Q ss_pred CCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCC
Q 010663 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLL 170 (505)
Q Consensus 91 L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 170 (505)
++..........+ . .+|.+|++|+.+.+..+... .-...+..+ .+|+.+.+..+ +.......|.++..|+
T Consensus 142 ~~~~~~~~~~~i~-~------~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 142 KEITIPEGVTVIG-D------EAFATCESLEYVSLPDSMET-LHNGLFSGC-GKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp SEEECCTTCCEEC-T------TTTTTCTTCCEEECCTTCCE-ECTTTTTTC-TTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred cccccCccccccc-h------hhhcccCCCcEEecCCccce-eccccccCC-CCceEEEcCCC-ceEeCchhhccccccc
Confidence 2222221111111 0 34455555555555433211 122223232 44555555443 2223334444555555
Q ss_pred EEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCcc
Q 010663 171 TLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNR 250 (505)
Q Consensus 171 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 250 (505)
.+.+..+... +.+......+|+.+.+... .+......+..+..|+.+.+..+... .....+..+..++.+......
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred eeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 5554443322 1122223344555544322 12222234445555555555443322 333344445555554444332
Q ss_pred CCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCcc
Q 010663 251 FTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPES 330 (505)
Q Consensus 251 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 330 (505)
+ ....|..+.+|+.+.+..+ +......+|.+|.+|+.+++..+ ++.....+|.+|.+|+.+++..+ ++.....+
T Consensus 288 i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 288 V---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp E---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred e---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 1 1234445555555555433 33233334455555555555432 33233344555555555555443 33333445
Q ss_pred CcCCCCCCEEECcC
Q 010663 331 FDDLTSLEVMNLSN 344 (505)
Q Consensus 331 ~~~l~~L~~L~l~~ 344 (505)
|.++++|+.+++..
T Consensus 362 F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 362 FQGCINLKKVELPK 375 (394)
T ss_dssp BTTCTTCCEEEEEG
T ss_pred hhCCCCCCEEEECC
Confidence 55555555555543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2e-15 Score=129.71 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=82.0
Q ss_pred hhhcCCCCcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCC
Q 010663 11 TIFNMSTLKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRN 90 (505)
Q Consensus 11 ~~~~l~~L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 90 (505)
.+.++++|++|++++|.++ .+|. +....++|++|++++|.+++. ..++.+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3556777777777777776 5554 331334777777777777643 46667777777777777777554444566777
Q ss_pred CCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchH----HhhccccccEEEeecCCc
Q 010663 91 LAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSS----IGNLSKSLETLGIANCSI 155 (505)
Q Consensus 91 L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~~L~~L~l~~n~l 155 (505)
|++|++++|.+...+. +..+..+++|++|++++|++. .+|.. +..+ ++|++|+++.|..
T Consensus 90 L~~L~L~~N~i~~~~~----~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l-~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGD----LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV-PQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGG----GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC-TTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchh----hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC-CccceeCCCcCCH
Confidence 7777777776655441 024556666666666666665 33432 4444 4555555555544
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=6.5e-17 Score=141.92 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=82.7
Q ss_pred hhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHh
Q 010663 60 SITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIG 139 (505)
Q Consensus 60 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 139 (505)
.+..+++|++|++++|.+++ +| .+.++++|++|++++|.++..| ..+..+++|++|++++|.+++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~------~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIE------NLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCS------SHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccccc------chhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 56666666666666666654 34 5566666666666666666544 334445666677777766664 33 455
Q ss_pred hccccccEEEeecCCccccCC-ccccCCCCCCEEEccCCccccccCcc----------ccCCCCCCeEeccCcccc
Q 010663 140 NLSKSLETLGIANCSISGNIP-PAISNLSNLLTLVLEGNKLTGPIPTT----------FGRLQKLQGLFLAFNKLV 204 (505)
Q Consensus 140 ~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~----------l~~l~~L~~L~l~~n~~~ 204 (505)
.+ ++|++|++++|.++...+ ..+..+++|++|++++|.+++..|.. +..+++|+.|+ ++.++
T Consensus 113 ~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 113 KL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 55 567777777777763221 35677777888888888776655442 67778888776 44443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.2e-16 Score=140.19 Aligned_cols=150 Identities=23% Similarity=0.315 Sum_probs=83.5
Q ss_pred hhcCCCCcEEEcccccccccCch------hhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccc
Q 010663 12 IFNMSTLKIIILINNSLSGSLPS------RIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTI 85 (505)
Q Consensus 12 ~~~l~~L~~L~ls~n~~~~~ip~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 85 (505)
+.....++.++++.+.+.|.+|. .+. .+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 44455555556666665555554 554 46666666666666653 44 5566666666666666665 345555
Q ss_pred cCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCc-hHHhhccccccEEEeecCCccccCCcc--
Q 010663 86 GNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLP-SSIGNLSKSLETLGIANCSISGNIPPA-- 162 (505)
Q Consensus 86 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~-- 162 (505)
..+++|++|++++|.+++.+ .+..+++|++|++++|.++...+ ..+..+ ++|++|++++|.+.+..|..
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~-------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS-------GIEKLVNLRVLYMSNNKITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH-------HHHHHHHSSEEEESEEECCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTT
T ss_pred hcCCcCCEEECcCCcCCcCC-------ccccCCCCCEEECCCCcCCchhHHHHHhcC-CCCCEEEecCCccccccccccc
Confidence 55566666666666665542 34555666666666666553211 244444 45666666666655443331
Q ss_pred --------ccCCCCCCEEE
Q 010663 163 --------ISNLSNLLTLV 173 (505)
Q Consensus 163 --------~~~l~~L~~L~ 173 (505)
+..+++|++|+
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC
T ss_pred hHHHHHHHHHhCCCcEEEC
Confidence 45566666554
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.5e-14 Score=124.12 Aligned_cols=133 Identities=19% Similarity=0.155 Sum_probs=92.7
Q ss_pred ccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCc
Q 010663 235 LSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQ 314 (505)
Q Consensus 235 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 314 (505)
+..+++|+.|++++|.++.. +......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 44556666666666666643 33222233777777777777654 4567777888888888888755445557788888
Q ss_pred EEeCcCccccccCCc--cCcCCCCCCEEECcCCcCcccCCcc----ccCCCCCCEEeCcCCcCc
Q 010663 315 IMDLAYNRLEGQIPE--SFDDLTSLEVMNLSNNKISGSIPKS----MEKLFYLRELNLSFNELE 372 (505)
Q Consensus 315 ~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~l~l~~n~l~ 372 (505)
+|++++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888886 4454 6778888888888888887 44553 778888888888888764
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=3.7e-12 Score=124.20 Aligned_cols=309 Identities=10% Similarity=0.091 Sum_probs=152.5
Q ss_pred CCEEeccCCcccccCchhhhCCCCCCEEEccCCc---CCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCC
Q 010663 43 VEHLNLALNRFSGTIPSSITNASKLTLLELGGNT---FSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKK 119 (505)
Q Consensus 43 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~---~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~ 119 (505)
|+.+.+..+ ++..-..+|.+|.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.+.. .++..+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~-----~aF~~c~~ 138 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS-----EAFHHCEE 138 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT-----TTTTTCTT
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh-----hhhhhhcc
Confidence 555555432 332334455555555555554432 33333444555555555544332 222211 34455555
Q ss_pred CCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEecc
Q 010663 120 LRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199 (505)
Q Consensus 120 L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 199 (505)
|+.+.+..+. .......+... ..|+.+.+..+ +...-...|. ...|+.+.+..+... .....|..+..++.....
T Consensus 139 L~~i~lp~~~-~~I~~~~F~~c-~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 139 LDTVTIPEGV-TSVADGMFSYC-YSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSD 213 (394)
T ss_dssp CCEEECCTTC-CEECTTTTTTC-TTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEEC
T ss_pred ccccccccee-eeecccceecc-cccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccc
Confidence 5555554322 11122222222 44555555433 2212222222 244555555433221 233344455555544433
Q ss_pred CccccccC-------------CccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCC
Q 010663 200 FNKLVGSC-------------PDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL 266 (505)
Q Consensus 200 ~n~~~~~~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 266 (505)
.+...... ...+.....+..+.+.. .+...-..+|..+.+|+.+.+.++.. ......|.+++.|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQ 291 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred ccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCcccccccccc
Confidence 32211000 00011223344444432 23333445677777777777765432 34456677778888
Q ss_pred EEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCc
Q 010663 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (505)
Q Consensus 267 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 346 (505)
.+.+.. .+.......|.+|.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.++.
T Consensus 292 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 292 DIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 887753 344455556777888888888654 44344567888888888888654 554445678888888888888775
Q ss_pred CcccCCccccCCCCCCEEeCcCCcC
Q 010663 347 ISGSIPKSMEKLFYLRELNLSFNEL 371 (505)
Q Consensus 347 l~~~~p~~l~~l~~L~~l~l~~n~l 371 (505)
... ..+..+..|+.+.+..+.+
T Consensus 369 ~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 369 SQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HHH---HTCBCCCCC----------
T ss_pred eeh---hhhhccCCCCEEEeCCCCE
Confidence 432 3566677788887766543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=3.2e-13 Score=114.94 Aligned_cols=108 Identities=27% Similarity=0.310 Sum_probs=95.0
Q ss_pred CcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEecc
Q 010663 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (505)
Q Consensus 18 L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 97 (505)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 578999999998 8998663 789999999999998778889999999999999999998888788999999999999
Q ss_pred CccccCCCCCcccccccCCCCCCCEEECcCCCCCccC
Q 010663 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFL 134 (505)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 134 (505)
+|.+++.+. ..+..+++|++|++++|++....
T Consensus 87 ~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPR-----GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCT-----TTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCH-----HHhcCCCCCCEEEeCCCCCCCCc
Confidence 999998853 45888999999999999987543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.9e-13 Score=114.39 Aligned_cols=108 Identities=22% Similarity=0.248 Sum_probs=73.7
Q ss_pred CEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCC
Q 010663 266 LFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNN 345 (505)
Q Consensus 266 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 345 (505)
+.+++++|.+.. +|..+ .++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555543 33333 256677777777777666667777777777777777777666666677777777777777
Q ss_pred cCcccCCccccCCCCCCEEeCcCCcCcccCC
Q 010663 346 KISGSIPKSMEKLFYLRELNLSFNELEGEIP 376 (505)
Q Consensus 346 ~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~p 376 (505)
++++..+..+..+++|+.|++++|++.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7776666667777777788877777765544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=5.5e-13 Score=113.82 Aligned_cols=107 Identities=23% Similarity=0.291 Sum_probs=93.2
Q ss_pred CcEEEcccccccccCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEecc
Q 010663 18 LKIIILINNSLSGSLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLA 97 (505)
Q Consensus 18 L~~L~ls~n~~~~~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 97 (505)
-+.+++++|.++ ++|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999997 8998764 789999999999998878899999999999999999998777778899999999999
Q ss_pred CccccCCCCCcccccccCCCCCCCEEECcCCCCCcc
Q 010663 98 YNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF 133 (505)
Q Consensus 98 ~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 133 (505)
+|.++..+. ..+..+++|++|++++|++...
T Consensus 90 ~N~l~~l~~-----~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPR-----GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCT-----TTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCH-----HHhccccCCCEEEeCCCCcccc
Confidence 999998863 4588899999999999998743
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=1.8e-11 Score=119.39 Aligned_cols=296 Identities=11% Similarity=0.130 Sum_probs=174.8
Q ss_pred chhhhCCC-CCCEEEccCCcCCccCcccccCCCCCCEEeccCcc---ccCCCCCcccccccCCCCCCCEEECcCCCCCcc
Q 010663 58 PSSITNAS-KLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNN---LTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF 133 (505)
Q Consensus 58 ~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 133 (505)
..+|.++. .|+.+.+..+ ++.+-..+|.+|++|+.+.+..+. ++.+.. .+|..|.+|+.+.+..+ ++..
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~-----~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR-----QAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT-----TTTTTCTTCCBCGGGTT-CSEE
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech-----hhchhcccceeeccCCc-ccee
Confidence 45666664 5788877643 555666778888888888777653 333322 56777777777776554 3323
Q ss_pred CchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccccCCccCCC
Q 010663 134 LPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCH 213 (505)
Q Consensus 134 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 213 (505)
-...+..+ .+|+.+.+..+. .......|..+..|+.+.+..+ ++......|. ..+|+.+.+..+-. ......+..
T Consensus 129 ~~~aF~~c-~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHC-EELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp CTTTTTTC-TTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTT
T ss_pred hhhhhhhh-ccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhh
Confidence 33344444 677777776443 2244556777778888877654 3333344454 35677777754432 234455667
Q ss_pred CCCCCeEeccCcccccccCcc--------------ccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCcccccc
Q 010663 214 LDRLDKLVLLGNKFSGSIPSC--------------LSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTL 279 (505)
Q Consensus 214 ~~~L~~L~l~~n~l~~~~~~~--------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 279 (505)
+..+............ +... +.....+..+.+.. .+.......|..+..|+.+.+..+.. ...
T Consensus 204 c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIG 280 (394)
T ss_dssp CTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EEC
T ss_pred ccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eec
Confidence 7777776655443221 1110 11112233333322 22333445677777788877765433 244
Q ss_pred ccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCC
Q 010663 280 SFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLF 359 (505)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 359 (505)
...+.++..|+.+.+.. .+.......|.+|.+|+.++|..+ ++.....+|.++.+|+.+.+..+ ++..-...|.++.
T Consensus 281 ~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 45667777888777753 344344556777888888887654 44444567777888888887544 5544456777888
Q ss_pred CCCEEeCcCCcC
Q 010663 360 YLRELNLSFNEL 371 (505)
Q Consensus 360 ~L~~l~l~~n~l 371 (505)
+|+.+++.++..
T Consensus 358 ~L~~i~~~~~~~ 369 (394)
T 4gt6_A 358 ALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEESSCHH
T ss_pred CCCEEEECCcee
Confidence 888888777643
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=9.9e-13 Score=112.25 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=71.0
Q ss_pred CEEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCC
Q 010663 266 LFLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNN 345 (505)
Q Consensus 266 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 345 (505)
+.+++++|.+. .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45556655553 3343332 56667777777776666666777777777777777777655555677777777777777
Q ss_pred cCcccCCccccCCCCCCEEeCcCCcCcccC
Q 010663 346 KISGSIPKSMEKLFYLRELNLSFNELEGEI 375 (505)
Q Consensus 346 ~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 375 (505)
++++..+..+..+++|+.|++++|++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 777555555777777777777777776443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1e-13 Score=133.42 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=47.9
Q ss_pred CCCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccc-----cCCCCCCEEEccCCccccc----cCcccc
Q 010663 118 KKLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAI-----SNLSNLLTLVLEGNKLTGP----IPTTFG 188 (505)
Q Consensus 118 ~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~l~ 188 (505)
++|++|+|++|.++......+....++|++|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555555555555433222222222345555555555543222222 1234555555555555421 222334
Q ss_pred CCCCCCeEeccCcccccc----CCccCCCCCCCCeEeccCcccc
Q 010663 189 RLQKLQGLFLAFNKLVGS----CPDELCHLDRLDKLVLLGNKFS 228 (505)
Q Consensus 189 ~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 228 (505)
.+++|++|+|++|.+... ++..+...++|++|+|++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 445555555555554321 1222333344444444444443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.5e-13 Score=132.18 Aligned_cols=135 Identities=20% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCCCceeccCccCCCCCCccc-cCCCCCCEEEccCCcccccccccc-----ccccCCCeeeccccccccc----CCcccc
Q 010663 239 TSLRFLYLGSNRFTSVIPSTF-WRLKDILFLDFSSNLLVGTLSFDI-----GNLKVLLGINLSENNLSGD----MPATIG 308 (505)
Q Consensus 239 ~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~ 308 (505)
++|+.|++++|.++......+ ..+++|+.|+|++|.+.......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 344555555554433211111 123345556666665543322222 2345677777777766532 333445
Q ss_pred CCCCCcEEeCcCcccccc----CCccCcCCCCCCEEECcCCcCccc----CCccccCCCCCCEEeCcCCcCcc
Q 010663 309 GLKSLQIMDLAYNRLEGQ----IPESFDDLTSLEVMNLSNNKISGS----IPKSMEKLFYLRELNLSFNELEG 373 (505)
Q Consensus 309 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~n~l~~ 373 (505)
.+++|++|+|++|.+++. ++..+...++|++|+|++|.++.. ++..+...++|++|++++|+++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 667778888888777643 244556667788888888887642 33445566788888888887753
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=1.3e-09 Score=105.62 Aligned_cols=301 Identities=10% Similarity=0.058 Sum_probs=191.0
Q ss_pred CCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCC
Q 010663 39 SLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCK 118 (505)
Q Consensus 39 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~ 118 (505)
...+|+.+.+... ++..-..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.+.. .++..+
T Consensus 44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~-----~aF~~~- 113 (379)
T 4h09_A 44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGD-----YVFQGT- 113 (379)
T ss_dssp GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECT-----TTTTTC-
T ss_pred cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecc-----ceeccC-
Confidence 3566777777543 55344567788888888888643 555556667776 5666666543 333321 344443
Q ss_pred CCCEEECcCCCCCccCchHHhhccccccEEEeecCCccccCCccccCCCCCCEEEccCCcccc------------ccCcc
Q 010663 119 KLRSLNFIGNPLDGFLPSSIGNLSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTG------------PIPTT 186 (505)
Q Consensus 119 ~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~ 186 (505)
+|+.+.+..+... .-...+.. .+++.+.+..+ ++..-...|..+.+++.+.+..+.... .....
T Consensus 114 ~L~~i~lp~~~~~-i~~~~F~~--~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 DLDDFEFPGATTE-IGNYIFYN--SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CCSEEECCTTCCE-ECTTTTTT--CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred CcccccCCCcccc-cccccccc--ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 6888887655321 22223333 35666665543 333445566777778777766543221 11223
Q ss_pred ccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCC
Q 010663 187 FGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDIL 266 (505)
Q Consensus 187 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 266 (505)
+..+..+..+.+.... .......+..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++......|..+.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 4445556666554432 2234455667788888888654 34345566788888998888765 5555667788888899
Q ss_pred EEEccCCccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCc
Q 010663 267 FLDFSSNLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNK 346 (505)
Q Consensus 267 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 346 (505)
.+.+..+ +.......+..|.+|+.+.+.++.++......|.+|.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 8888654 44445567788899999999888777566678889999999999754 55455678999999999988654
Q ss_pred CcccCCccccCCC
Q 010663 347 ISGSIPKSMEKLF 359 (505)
Q Consensus 347 l~~~~p~~l~~l~ 359 (505)
++..-..+|.++.
T Consensus 344 v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 ITLIESGAFEGSS 356 (379)
T ss_dssp CCEECTTTTTTSS
T ss_pred cCEEchhHhhCCC
Confidence 4434445565553
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.3e-11 Score=115.40 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=90.8
Q ss_pred cEEEcccc-cccccCchhhhcCCCCCCEEeccC-CcccccCchhhhCCCCCCEEEccCCcCCccCcccccCCCCCCEEec
Q 010663 19 KIIILINN-SLSGSLPSRIGLSLPTVEHLNLAL-NRFSGTIPSSITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGL 96 (505)
Q Consensus 19 ~~L~ls~n-~~~~~ip~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 96 (505)
..++++++ .++ .||. +. .+++|++|+|++ |.+++..+..|+++++|++|+|++|.+++..|..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688888 888 7999 77 799999999996 9999777788999999999999999999999999999999999999
Q ss_pred cCccccCCCCCcccccccCCCCCCCEEECcCCCCCcc
Q 010663 97 AYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGF 133 (505)
Q Consensus 97 ~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 133 (505)
++|.+++.|. ..+..++ |+.|+|.+|.+...
T Consensus 88 ~~N~l~~~~~-----~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSW-----KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCS-----TTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCH-----HHcccCC-ceEEEeeCCCccCC
Confidence 9999998863 3344444 99999999988743
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=7.2e-11 Score=113.06 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=69.6
Q ss_pred ceeccCc-cCCCCCCccccCCCCCCEEEccC-CccccccccccccccCCCeeecccccccccCCccccCCCCCcEEeCcC
Q 010663 243 FLYLGSN-RFTSVIPSTFWRLKDILFLDFSS-NLLVGTLSFDIGNLKVLLGINLSENNLSGDMPATIGGLKSLQIMDLAY 320 (505)
Q Consensus 243 ~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 320 (505)
.++.+++ .++. +|. +..+++|+.|+|++ |.+.+..+..+..+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6664 555 77777777777775 777766666677777777777777777766666677777777777777
Q ss_pred ccccccCCccCcCCCCCCEEECcCCcCc
Q 010663 321 NRLEGQIPESFDDLTSLEVMNLSNNKIS 348 (505)
Q Consensus 321 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 348 (505)
|++++..+..+..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777755555555444 777777777665
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=6.3e-09 Score=100.76 Aligned_cols=290 Identities=12% Similarity=0.100 Sum_probs=187.0
Q ss_pred hhCCCCCCEEEccCCcCCccCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCCCCccCchHHhh
Q 010663 61 ITNASKLTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNPLDGFLPSSIGN 140 (505)
Q Consensus 61 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 140 (505)
+....+|+.+.+.. .++.+...+|.+|.+|+.++|..+ ++.+.. .+|.++ +|+.+.+..+ +...-...+..
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~-----~aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGD-----GAFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECT-----TTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEech-----hhhcCC-CCceEECCce-eeEeccceecc
Confidence 44566788888864 455566777888999999988654 554432 566776 5777776544 33222233333
Q ss_pred ccccccEEEeecCCccccCCccccCCCCCCEEEccCCccccccCccccCCCCCCeEeccCccccc------------cCC
Q 010663 141 LSKSLETLGIANCSISGNIPPAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLAFNKLVG------------SCP 208 (505)
Q Consensus 141 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~ 208 (505)
.+|+.+.+..+-.. .....|.++ +|+.+.+..+ ++......|..+..++.+.+..+.... ...
T Consensus 113 --~~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 113 --TDLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp --CCCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred --CCcccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 46888888765322 333444443 5666666543 343445667778888877766543211 112
Q ss_pred ccCCCCCCCCeEeccCcccccccCccccCCCCCCceeccCccCCCCCCccccCCCCCCEEEccCCccccccccccccccC
Q 010663 209 DELCHLDRLDKLVLLGNKFSGSIPSCLSNLTSLRFLYLGSNRFTSVIPSTFWRLKDILFLDFSSNLLVGTLSFDIGNLKV 288 (505)
Q Consensus 209 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 288 (505)
..+.....+..+.+....- ......+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +.......+.++..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 2344555666666654332 234455667778888887654 44455567778888888888765 44455566778888
Q ss_pred CCeeecccccccccCCccccCCCCCcEEeCcCccccccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcC
Q 010663 289 LLGINLSENNLSGDMPATIGGLKSLQIMDLAYNRLEGQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSF 368 (505)
Q Consensus 289 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~ 368 (505)
|+.+.+..+ +.......|.+|.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 888888654 44344556788889999988888777666778888889999988754 5544556788888888887754
Q ss_pred C
Q 010663 369 N 369 (505)
Q Consensus 369 n 369 (505)
+
T Consensus 343 ~ 343 (379)
T 4h09_A 343 S 343 (379)
T ss_dssp T
T ss_pred c
Confidence 3
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.3e-10 Score=110.82 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=18.4
Q ss_pred CCCCCEEEccCCccccc----cCccccCCCCCCeEeccCcccc
Q 010663 166 LSNLLTLVLEGNKLTGP----IPTTFGRLQKLQGLFLAFNKLV 204 (505)
Q Consensus 166 l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 204 (505)
+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34555555555554432 2222234455555555555544
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=3.4e-10 Score=107.82 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCCCCeEeccCccccccCCccC---CCCCCCCeEeccCcccccc----cCccccCCCCCCceeccCccCCCCCCccccC-
Q 010663 190 LQKLQGLFLAFNKLVGSCPDEL---CHLDRLDKLVLLGNKFSGS----IPSCLSNLTSLRFLYLGSNRFTSVIPSTFWR- 261 (505)
Q Consensus 190 l~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 261 (505)
+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4556666665555543221111 1356667777766666542 2223344567777777777665433333322
Q ss_pred CCCCCEEEccCCc
Q 010663 262 LKDILFLDFSSNL 274 (505)
Q Consensus 262 ~~~L~~L~l~~n~ 274 (505)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 3556666665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.2e-08 Score=86.02 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCCCCEEeccCC-cccc----cCchhhhCCCCCCEEEccCCcCCcc----CcccccCCCCCCEEeccCccccCCCCCcc
Q 010663 39 SLPTVEHLNLALN-RFSG----TIPSSITNASKLTLLELGGNTFSGL----IPDTIGNLRNLAWLGLAYNNLTSSTSKLS 109 (505)
Q Consensus 39 ~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 109 (505)
..++|++|+|++| .+.. .+...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.+.... ...
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-HHH
Confidence 3445555555554 4432 1233344445555555555554432 1222333455555555555554320 001
Q ss_pred cccccCCCCCCCEEEC--cCCCCCccCc----hHHhhccccccEEEeecCCcc
Q 010663 110 FLSSLANCKKLRSLNF--IGNPLDGFLP----SSIGNLSKSLETLGIANCSIS 156 (505)
Q Consensus 110 ~~~~l~~l~~L~~L~l--~~n~~~~~~~----~~~~~l~~~L~~L~l~~n~l~ 156 (505)
+...+...+.|++|++ ++|.+...-. ..+... +.|++|+|++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-SSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-CCcCEEeccCCCCC
Confidence 1134455556666666 5566653322 222222 45666666666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=6.2e-08 Score=87.40 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=78.3
Q ss_pred ccccch-hhhcCCCCcE--EEcccccccccCch---hhhcCCCCCCEEeccCCcccc--cCchhhhCCCCCCEEEccCCc
Q 010663 5 VGMVSA-TIFNMSTLKI--IILINNSLSGSLPS---RIGLSLPTVEHLNLALNRFSG--TIPSSITNASKLTLLELGGNT 76 (505)
Q Consensus 5 ~~~~~~-~~~~l~~L~~--L~ls~n~~~~~ip~---~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~ 76 (505)
++.++- .|...+.|+. ++++.|... .++. .+..++++|++|+|++|++++ .+|..+..+++|+.|+|++|.
T Consensus 129 ~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 129 QQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp TTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred ccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 344442 2556666665 677777433 3332 222368899999999999886 456777889999999999999
Q ss_pred CCccCcccccCCC--CCCEEeccCccccCC-CCCc-ccccccCCCCCCCEEEC
Q 010663 77 FSGLIPDTIGNLR--NLAWLGLAYNNLTSS-TSKL-SFLSSLANCKKLRSLNF 125 (505)
Q Consensus 77 ~~~~~~~~l~~l~--~L~~L~L~~n~l~~~-~~~~-~~~~~l~~l~~L~~L~l 125 (505)
+++. ..+..+. +|++|+|++|.+.+. +... .....+..+|+|+.||=
T Consensus 208 i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 208 LKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 8865 3344444 899999999988753 2110 00123667888988873
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=3.8e-08 Score=84.54 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=49.2
Q ss_pred cccCCCeeeccccccccc----CCccccCCCCCcEEeCcCcccccc----CCccCcCCCCCCEEEC--cCCcCccc----
Q 010663 285 NLKVLLGINLSENNLSGD----MPATIGGLKSLQIMDLAYNRLEGQ----IPESFDDLTSLEVMNL--SNNKISGS---- 350 (505)
Q Consensus 285 ~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~---- 350 (505)
..++|++|+|++|.+... +...+...+.|++|+|++|.+... +...+...++|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 334455555555554332 222333445666666666666543 3344555666777777 66766542
Q ss_pred CCccccCCCCCCEEeCcCCcCc
Q 010663 351 IPKSMEKLFYLRELNLSFNELE 372 (505)
Q Consensus 351 ~p~~l~~l~~L~~l~l~~n~l~ 372 (505)
+...+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 3344555677777777777653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=5.9e-08 Score=87.53 Aligned_cols=85 Identities=27% Similarity=0.308 Sum_probs=55.9
Q ss_pred EeccCCcc---cccCchhhhCCCCCCEEEccCCcCCc--cCcccccCCCCCCEEeccCccccCCCCCcccccccCCCCCC
Q 010663 46 LNLALNRF---SGTIPSSITNASKLTLLELGGNTFSG--LIPDTIGNLRNLAWLGLAYNNLTSSTSKLSFLSSLANCKKL 120 (505)
Q Consensus 46 L~l~~n~~---~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L 120 (505)
++++.|.. .+.++....++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..+ +..+..+ +|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~----l~~l~~l-~L 222 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE----LDKIKGL-KL 222 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG----GGGGTTS-CC
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh----hhhcccC-Cc
Confidence 45555532 22233333567888888888888887 345666778888888888888876621 1333344 78
Q ss_pred CEEECcCCCCCccCc
Q 010663 121 RSLNFIGNPLDGFLP 135 (505)
Q Consensus 121 ~~L~l~~n~~~~~~~ 135 (505)
++|+|++|++.+.+|
T Consensus 223 ~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 223 EELWLDGNSLCDTFR 237 (267)
T ss_dssp SEEECTTSTTGGGCS
T ss_pred ceEEccCCcCccccC
Confidence 888888888776554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1.4e-06 Score=72.77 Aligned_cols=93 Identities=10% Similarity=0.087 Sum_probs=66.2
Q ss_pred cCchhhhcCCCCCCEEeccCCcccccCchhhhCCCCCCEEEccCC-cCCccCcccccCC----CCCCEEeccCcc-ccCC
Q 010663 31 SLPSRIGLSLPTVEHLNLALNRFSGTIPSSITNASKLTLLELGGN-TFSGLIPDTIGNL----RNLAWLGLAYNN-LTSS 104 (505)
Q Consensus 31 ~ip~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~ 104 (505)
.+|.... .-.+|++||+++|.++..--..+.++++|++|+|++| .+++..-..++.+ ++|++|+|++|. +++.
T Consensus 52 ~LP~~~~-~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPL-DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCST-TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccC-CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3454332 2357889999988887655566788889999999988 4776544556654 479999998885 6543
Q ss_pred CCCcccccccCCCCCCCEEECcCCC
Q 010663 105 TSKLSFLSSLANCKKLRSLNFIGNP 129 (505)
Q Consensus 105 ~~~~~~~~~l~~l~~L~~L~l~~n~ 129 (505)
. +..+.++++|++|+++++.
T Consensus 131 G-----l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 G-----IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp H-----HHHGGGCTTCCEEEEESCT
T ss_pred H-----HHHHhcCCCCCEEECCCCC
Confidence 1 1456788999999999886
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=3.2e-06 Score=70.61 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=50.0
Q ss_pred CCCCEEeccCccccCCCCCcccccccCCCCCCCEEECcCCC-CCccCchHHhhc---cccccEEEeecCC-ccccCCccc
Q 010663 89 RNLAWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNFIGNP-LDGFLPSSIGNL---SKSLETLGIANCS-ISGNIPPAI 163 (505)
Q Consensus 89 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l---~~~L~~L~l~~n~-l~~~~~~~~ 163 (505)
..|+.||+++|.++... +..+..|++|++|+|++|. ++..--..+..+ .++|++|+|++|. ++..--..+
T Consensus 61 ~~L~~LDLs~~~Itd~G-----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGG-----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCCccHHH-----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 35666666666654431 1345667777777777774 554333334432 2357777777764 554433455
Q ss_pred cCCCCCCEEEccCCc
Q 010663 164 SNLSNLLTLVLEGNK 178 (505)
Q Consensus 164 ~~l~~L~~L~l~~n~ 178 (505)
..+++|++|++++|.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 667777777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00027 Score=60.09 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=62.8
Q ss_pred CCCCCCEEeccCC-cccc----cCchhhhCCCCCCEEEccCCcCCccCc----ccccCCCCCCEEeccCccccCCCCCcc
Q 010663 39 SLPTVEHLNLALN-RFSG----TIPSSITNASKLTLLELGGNTFSGLIP----DTIGNLRNLAWLGLAYNNLTSSTSKLS 109 (505)
Q Consensus 39 ~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~ 109 (505)
+-+.|++|+|+++ .+.. .+.+.+..-+.|+.|+|++|.+.+..- ..+..-+.|++|+|++|.|.... ...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence 3456666666664 5532 234455556677777777776654322 22334566777777777765431 111
Q ss_pred cccccCCCCCCCEEECcCC---CCCcc----CchHHhhccccccEEEeecCCc
Q 010663 110 FLSSLANCKKLRSLNFIGN---PLDGF----LPSSIGNLSKSLETLGIANCSI 155 (505)
Q Consensus 110 ~~~~l~~l~~L~~L~l~~n---~~~~~----~~~~~~~l~~~L~~L~l~~n~l 155 (505)
+...+..-+.|++|+|+++ .+... +...+..- +.|+.|+++.+.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCc
Confidence 2245555666777877754 33322 22223332 4677777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00016 Score=61.58 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=4.9
Q ss_pred CCCCCEEEccC
Q 010663 64 ASKLTLLELGG 74 (505)
Q Consensus 64 l~~L~~L~l~~ 74 (505)
-+.|++|+|++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0042 Score=49.17 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=37.1
Q ss_pred EEeCcCcccc-ccCCccCcCCCCCCEEECcCCcCcccCCccccCCCCCCEEeCcCCcCc
Q 010663 315 IMDLAYNRLE-GQIPESFDDLTSLEVMNLSNNKISGSIPKSMEKLFYLRELNLSFNELE 372 (505)
Q Consensus 315 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 372 (505)
.++.+++.++ ..+|..+ .++|+.|+|++|+++...+..|..+++|+.|++++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 2445433 246778888888887655666777777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.27 E-value=0.006 Score=48.22 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=16.3
Q ss_pred CCEEEccCCcCCccCcccccCCCCCCEEeccCccc
Q 010663 67 LTLLELGGNTFSGLIPDTIGNLRNLAWLGLAYNNL 101 (505)
Q Consensus 67 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 101 (505)
|++|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444344444444455555544433
No 165
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=94.94 E-value=0.0028 Score=59.10 Aligned_cols=36 Identities=36% Similarity=0.613 Sum_probs=29.7
Q ss_pred cccHHHHHHHHhCcccCCeeecCCCceEEEEEcCCC
Q 010663 470 RFSYLELLQATDNFAENNIIGRGGFGPFMEQDLKMG 505 (505)
Q Consensus 470 ~~~~~el~~AT~~F~~~~~iG~G~fG~VYkg~L~~G 505 (505)
++++.++..++++|.....||+|+||+||+|+..+|
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~ 63 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG 63 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCC
Confidence 456667778899999999999999999999997654
No 166
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=93.95 E-value=0.012 Score=57.30 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=29.3
Q ss_pred ccHHHHHHHHhCcccCCeeecCCCceEEEEEcCC
Q 010663 471 FSYLELLQATDNFAENNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 471 ~~~~el~~AT~~F~~~~~iG~G~fG~VYkg~L~~ 504 (505)
+.++++..++++|.-.++||+|+||+||+|+..+
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~ 97 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKN 97 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETT
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcC
Confidence 4567777788999999999999999999998754
No 167
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=93.41 E-value=0.029 Score=51.67 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.4
Q ss_pred CCeeecCCCceEEEEEcCC
Q 010663 486 NNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 486 ~~~iG~G~fG~VYkg~L~~ 504 (505)
...||+|+||+||||++.+
T Consensus 41 ~~~iG~G~fG~Vy~~~~~~ 59 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWHG 59 (307)
T ss_dssp EEECCCCSSSEEEEEESSS
T ss_pred eeEEeeCCCcEEEEEEECC
Confidence 3579999999999999764
No 168
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=93.12 E-value=0.03 Score=52.16 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.1
Q ss_pred cccCCeeecCCCceEEEEEcC
Q 010663 483 FAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L~ 503 (505)
|.-.+.||+|+||+||||++.
T Consensus 43 ~~l~~~LG~G~fG~Vy~a~~~ 63 (329)
T 4aoj_A 43 IVLKWELGEGAFGKVFLAECH 63 (329)
T ss_dssp EEEEEEEEECSSEEEEEEEES
T ss_pred eEEEEEEccCCCcEEEEEEEC
Confidence 444567999999999999864
No 169
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=93.03 E-value=0.0074 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.4
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.....||+|+||+||+|...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~ 79 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSK 79 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEET
T ss_pred hheeeeheeccCCCeEEEEEEEC
Confidence 56888889999999999999875
No 170
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=89.89 E-value=0.096 Score=49.26 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=17.1
Q ss_pred CcccCCeeecCCCceEEEEEc
Q 010663 482 NFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L 502 (505)
+|.-...||+|+||+||||+.
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~ 85 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADA 85 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEE
T ss_pred HeEEeeEEecCCCeEEEEEEE
Confidence 444456799999999999975
No 171
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=89.08 E-value=0.15 Score=47.32 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=16.7
Q ss_pred ccHHHHHHHHhCccc---------CCeeecCCCceEEEEEcC
Q 010663 471 FSYLELLQATDNFAE---------NNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 471 ~~~~el~~AT~~F~~---------~~~iG~G~fG~VYkg~L~ 503 (505)
.++.+...++..|.. ..+||+|+||+||+|...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~ 71 (325)
T 3kul_A 30 HTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLR 71 (325)
T ss_dssp -------------CCBCCGGGEEEEEEEEETTTEEEEEEEEC
T ss_pred ccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEe
Confidence 455666666655554 378999999999999863
No 172
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=88.74 E-value=0.11 Score=50.06 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=29.0
Q ss_pred cccHHHHHHHHhCcccCCeeecCCCceEEEEEcC
Q 010663 470 RFSYLELLQATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 470 ~~~~~el~~AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.+.+++....+++|.-..+||+|+||+||+|...
T Consensus 50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~ 83 (412)
T 2vd5_A 50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMK 83 (412)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEET
T ss_pred hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEEC
Confidence 4566777778899999999999999999999864
No 173
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=88.43 E-value=0.12 Score=49.81 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.8
Q ss_pred cHHHHHHHHhCcccCCeeecCCCceEEEEEcC
Q 010663 472 SYLELLQATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 472 ~~~el~~AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.++++..++++|.-..+||+|+||+||+|+..
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~ 91 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK 91 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEET
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEEC
Confidence 34566667889999999999999999999864
No 174
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=88.16 E-value=0.13 Score=49.74 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHhCcccCCeeecCCCceEEEEEc
Q 010663 478 QATDNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 478 ~AT~~F~~~~~iG~G~fG~VYkg~L 502 (505)
..+.+|...++||+|+||+||+|+-
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~ 99 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATD 99 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCceeEEEecccccCCCEEEEEEEe
Confidence 4456677778999999999999983
No 175
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=87.83 E-value=0.14 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.1
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.....||+|+||+||+|+-
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~ 79 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKD 79 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEE
T ss_pred hheEeCcEeccCCCeEEEEEEE
Confidence 4566667899999999999974
No 176
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=86.87 E-value=0.23 Score=46.42 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.8
Q ss_pred cccCCeeecCCCceEEEEEcC
Q 010663 483 FAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L~ 503 (505)
|..-..||+|+||+||+|+-.
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~ 96 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVR 96 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEET
T ss_pred cEEeEEeecCcCeEEEEEEEC
Confidence 444467999999999999753
No 177
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=84.93 E-value=0.3 Score=46.69 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=17.0
Q ss_pred CcccCCeeecCCCceEEEEEc
Q 010663 482 NFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L 502 (505)
.|.-...||+|+||+||+|+-
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~ 75 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARR 75 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEE
T ss_pred CeEEEEEEecccCeEEEEEEE
Confidence 344556899999999999974
No 178
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=84.85 E-value=0.32 Score=46.72 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.6
Q ss_pred CcccCCeeecCCCceEEEEEc
Q 010663 482 NFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L 502 (505)
.|..-..||+|+||+||+|+-
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~ 172 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATV 172 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEE
T ss_pred hcEeeeEeccCcCcEEEEEEE
Confidence 365567899999999999975
No 179
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=83.84 E-value=0.37 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=18.9
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-..+||+|+||.||+|+..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~ 67 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLK 67 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CB
T ss_pred hhceeeeEEeeCCCeEEEEEEEe
Confidence 46777789999999999999864
No 180
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=83.37 E-value=0.38 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=19.7
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-..+||+|+||+||+|+-.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~ 211 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKA 211 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred HHeEEEEEEecccCeEEEEEEEC
Confidence 56877789999999999999753
No 181
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=82.73 E-value=0.55 Score=43.03 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.6
Q ss_pred CcccCCeeecCCCceEEEEEcC
Q 010663 482 NFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.|.-...||+|+||+||+|...
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~ 58 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWH 58 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESS
T ss_pred ceEEEeEecCCCCeEEEEEEEC
Confidence 3444578999999999999864
No 182
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=82.04 E-value=0.34 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHhCcccCCeeecCCCceEEEEEc
Q 010663 479 ATDNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 479 AT~~F~~~~~iG~G~fG~VYkg~L 502 (505)
..+.|.-..+||+|+||+||+|+.
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~ 86 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQ 86 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC
T ss_pred CCEEEEEEEEeeccCCEEEEEEEe
Confidence 446677778999999999999953
No 183
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=81.84 E-value=0.53 Score=45.94 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=20.3
Q ss_pred HhCcccCCeeecCCCceEEEEEcCC
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L~~ 504 (505)
.++|.-...||+|+||.||+|...+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~ 211 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNK 211 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETT
T ss_pred hHHeEEEEEcccCCceEEEEEEECC
Confidence 3456666789999999999998754
No 184
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=81.83 E-value=0.55 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.1
Q ss_pred HhCcccCCeeecCCCceEEEEEcC
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++.|.-...||+|+||+||+|+..
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~ 75 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQK 75 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEET
T ss_pred cCcEEEeeEEeeCCCEEEEEEEEC
Confidence 456777788999999999999864
No 185
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=81.16 E-value=0.5 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=18.5
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-...||+|+||+||+|+..
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~ 93 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVS 93 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEEC
T ss_pred hHeEEeeEeeeCCCEEEEEEEEc
Confidence 34555678999999999999853
No 186
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=80.73 E-value=0.61 Score=44.59 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.6
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-..+||+|+||+||+|+..
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~ 74 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLK 74 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred hHcEEEEEEeeCCCeEEEEEEEC
Confidence 45777789999999999999864
No 187
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=80.72 E-value=0.59 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=18.4
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-...||+|+||+||+|+..
T Consensus 37 ~~y~i~~~lG~G~~g~V~~~~~~ 59 (309)
T 3p86_A 37 CDLNIKEKIGAGSFGTVHRAEWH 59 (309)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred hHceeeeEeecCCCeEEEEEEEC
Confidence 34555678999999999999753
No 188
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=80.35 E-value=0.59 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=18.9
Q ss_pred CcccCCeeecCCCceEEEEEcCC
Q 010663 482 NFAENNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L~~ 504 (505)
.|.-...||+|+||+||+|...+
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~ 79 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEK 79 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTT
T ss_pred ceEEEEEEccCCCeEEEEEEcCC
Confidence 36666789999999999998654
No 189
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=80.17 E-value=0.58 Score=43.45 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.1
Q ss_pred cccCCeeecCCCceEEEEEcC
Q 010663 483 FAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L~ 503 (505)
|....+||+|+||.||+|...
T Consensus 46 ~~~~~~lG~G~~g~Vy~~~~~ 66 (333)
T 1mqb_A 46 VTRQKVIGAGEFGEVYKGMLK 66 (333)
T ss_dssp EEEEEEEEECSSSEEEEEEEE
T ss_pred hhcccEEecCCCeEEEEEEEe
Confidence 444578999999999999763
No 190
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=80.09 E-value=0.89 Score=42.84 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=23.9
Q ss_pred HHHHHHHhCcccCCeeecCCCceEEEEEcC
Q 010663 474 LELLQATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 474 ~el~~AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.......++|.....||+|+||.||+|+..
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~ 116 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHR 116 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEET
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEEC
Confidence 333445667888889999999999999875
No 191
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=80.00 E-value=0.83 Score=41.26 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=18.9
Q ss_pred hCcccCCeeecCCCceEEEEEcCCC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLKMG 505 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~~G 505 (505)
.-+.-.+.||+|+||.||+|..++|
T Consensus 90 ~~~~~~~~iG~G~~g~Vy~~~~~~g 114 (282)
T 1zar_A 90 KVDAIGKLMGEGKESAVFNCYSEKF 114 (282)
T ss_dssp SCSEEEEEEEECSSEEEEEEEETTT
T ss_pred eEEEecCEeccCCCceEEEEEeCCC
Confidence 3344447899999999999987443
No 192
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=79.37 E-value=0.55 Score=44.49 Aligned_cols=18 Identities=44% Similarity=0.707 Sum_probs=15.5
Q ss_pred cCCeeecCCCceEEEEEc
Q 010663 485 ENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 485 ~~~~iG~G~fG~VYkg~L 502 (505)
-..+||+|+||+||+|+.
T Consensus 93 ~~~~LG~G~fg~Vy~~~~ 110 (373)
T 3c1x_A 93 FNEVIGRGHFGCVYHGTL 110 (373)
T ss_dssp EEEEEECCSSSEEEEEEE
T ss_pred cCcEeeeCCCeEEEEEEE
Confidence 346799999999999986
No 193
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=79.28 E-value=0.65 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=17.9
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
++|.-...||+|+||+||+|+.
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~ 102 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEA 102 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEE
T ss_pred HHCEeeeEEeeCCCeeEEEEEE
Confidence 4455567899999999999974
No 194
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=79.09 E-value=0.64 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.7
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|...+.||+|+||+||+|.-
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~ 75 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARD 75 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEE
Confidence 4477778899999999999974
No 195
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=78.96 E-value=0.74 Score=40.95 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCeeecCCCceEEEEEc
Q 010663 486 NNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 486 ~~~iG~G~fG~VYkg~L 502 (505)
...||+|+||.||+|..
T Consensus 52 ~~~ig~G~~g~Vy~a~~ 68 (258)
T 1zth_A 52 GGVISTGKEANVFYADG 68 (258)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred CCEEeecceEEEEEEEE
Confidence 46799999999999987
No 196
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=78.63 E-value=0.71 Score=43.30 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.0
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
++|.-.+.||+|+||.||+|..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~ 75 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRK 75 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEEEE
Confidence 4677778999999999999976
No 197
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=78.53 E-value=0.72 Score=42.67 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=19.7
Q ss_pred HhCcccCCeeecCCCceEEEEEc
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L 502 (505)
.++|.-...||+|+||+||+|..
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~ 67 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATA 67 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE
T ss_pred HHHceeeeEeccCCCcceEEEEe
Confidence 46677778999999999999975
No 198
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=78.42 E-value=0.7 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=17.4
Q ss_pred cccCCeeecCCCceEEEEEcC
Q 010663 483 FAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L~ 503 (505)
|.....||+|+||.||+|+..
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~ 67 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREK 67 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEET
T ss_pred hhccEEeccCCCeEEEEEEEC
Confidence 444568999999999999865
No 199
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=78.33 E-value=0.81 Score=44.60 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.3
Q ss_pred hCcccCCeeecCCCceEEEEEcCC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~~ 504 (505)
+.|.-...||+|+||.||+|...+
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~ 207 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNG 207 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETT
T ss_pred hHceeeeeecCCCCeEEEEEEECC
Confidence 345556789999999999998764
No 200
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=77.99 E-value=0.82 Score=42.42 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=21.3
Q ss_pred HHHhCcccCCeeecCCCceEEEEEcC
Q 010663 478 QATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 478 ~AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
...++|.-...||+|+||.||+|...
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~ 69 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAP 69 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEec
Confidence 34567777788999999999999864
No 201
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=77.91 E-value=0.91 Score=42.95 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=19.1
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-..+||+|+||+||+|+-.
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~ 60 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHK 60 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEET
T ss_pred hheEEEEEEeeCCCeEEEEEEEc
Confidence 45666789999999999999764
No 202
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=77.90 E-value=0.65 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=17.9
Q ss_pred cccCCeeecCCCceEEEEEcCC
Q 010663 483 FAENNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L~~ 504 (505)
|....+||+|+||+||+|...+
T Consensus 42 Y~~~~~lG~G~~g~V~~a~~~~ 63 (394)
T 4e7w_A 42 YTNCKVIGNGSFGVVFQAKLVE 63 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEETT
T ss_pred EEEeEEEeeCCCeEEEEEEECC
Confidence 4445789999999999998643
No 203
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=77.19 E-value=0.78 Score=44.23 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=17.6
Q ss_pred cccCCeeecCCCceEEEEEcC
Q 010663 483 FAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L~ 503 (505)
|...++||+|+||.||+|+..
T Consensus 56 y~~~~~lG~G~fg~Vy~~~~~ 76 (420)
T 1j1b_A 56 YTDTKVIGNGSFGVVYQAKLC 76 (420)
T ss_dssp EEEEEEEEECSSEEEEEEEET
T ss_pred EEeeeEEeeCCCEEEEEEEEC
Confidence 445578999999999999874
No 204
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=77.15 E-value=0.78 Score=43.53 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=21.5
Q ss_pred HHHhCcccCCeeecCCCceEEEEEcC
Q 010663 478 QATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 478 ~AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
..+++|.-...||+|+||+||+|.-.
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~ 76 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDR 76 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEET
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEc
Confidence 44567877889999999999999753
No 205
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=77.00 E-value=1.2 Score=42.95 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.7
Q ss_pred HHhCcccCCeeecCCCceEEEEEcC
Q 010663 479 ATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 479 AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
..+.|.-...||+|+||+||+|.-.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~ 157 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFER 157 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEET
T ss_pred hhccEEEEeEEeeCCCeEEEEEEEC
Confidence 4567777788999999999999753
No 206
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=76.94 E-value=0.82 Score=42.44 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.7
Q ss_pred HhCcccCCeeecCCCceEEEEEc
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L 502 (505)
.++|.....||+|+||.||+|.-
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~ 72 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRH 72 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEE
Confidence 34566667899999999999985
No 207
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=76.03 E-value=0.81 Score=42.32 Aligned_cols=25 Identities=16% Similarity=0.338 Sum_probs=20.8
Q ss_pred HHhCcccCCeeecCCCceEEEEEcC
Q 010663 479 ATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 479 AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
..+.|.-...||+|+||.||+|+..
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~ 59 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR 59 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET
T ss_pred cccceEEEeEeecCCCeEEEEEEEC
Confidence 3456777789999999999999864
No 208
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=75.94 E-value=0.92 Score=42.93 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=18.8
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-...||+|+||.||+|...
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~ 136 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLR 136 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEET
T ss_pred HHeEEeeEeccCCCCeEEEEEEe
Confidence 34555678999999999999875
No 209
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=75.72 E-value=0.94 Score=42.95 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.5
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.-...||+|+||+||+|+.
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~ 90 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEA 90 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred hheEeeeEEecCCCeEEEEEEE
Confidence 3455557899999999999974
No 210
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=75.67 E-value=0.95 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=19.7
Q ss_pred HhCcccCCeeecCCCceEEEEEc
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L 502 (505)
.++|.-...||+|+||+||+|+.
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~ 66 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATA 66 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE
T ss_pred HHHceeeeeecCCCCceeEEeee
Confidence 46677778999999999999985
No 211
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=75.58 E-value=0.96 Score=41.70 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.6
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
++|.-...||+|+||+||+|.-
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~ 57 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAIN 57 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEE
Confidence 3455557899999999999964
No 212
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=74.88 E-value=1.1 Score=44.75 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.3
Q ss_pred hCcccCCeeecCCCceEEEEEcCC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLKM 504 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~~ 504 (505)
+.|.-...||+|+||.||+|...+
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~ 290 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNG 290 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETT
T ss_pred hhhhhheecccCCCeEEEEEEECC
Confidence 345556789999999999998764
No 213
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=74.81 E-value=0.97 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=18.0
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.-...||+|+||.||+|+-
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~ 64 (320)
T 3a99_A 43 SQYQVGPLLGSGGFGSVYSGIR 64 (320)
T ss_dssp TTEEEEEECSSSSSCEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEE
Confidence 4455567899999999999974
No 214
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=74.47 E-value=1.1 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=18.4
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
..|.-..+||+|+||+||+|.-.
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~ 119 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDH 119 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEET
T ss_pred CcEEEEEEcccCccEEEEEEEEC
Confidence 34666678999999999999653
No 215
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=74.25 E-value=1.1 Score=41.86 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=18.7
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-...||+|+||.||+|+-.
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~ 63 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHK 63 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET
T ss_pred HHCEEEEEeecCcCcEEEEEEEC
Confidence 34666678999999999999854
No 216
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=73.86 E-value=1.3 Score=44.33 Aligned_cols=23 Identities=39% Similarity=0.819 Sum_probs=19.6
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|...++||+|+||.||+|+..
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~ 207 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMK 207 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET
T ss_pred hheEEEEEEeeCCCeEEEEEEEC
Confidence 56777788999999999999864
No 217
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=73.84 E-value=1.2 Score=43.39 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.0
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-...||+|+||.||+|...
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~ 215 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR 215 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred HHeEEEeeecCcCCeeEEEEEec
Confidence 45666678999999999999864
No 218
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=73.39 E-value=1.2 Score=42.07 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=17.8
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.-...||+|+||+||+|.-
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~ 63 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAID 63 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEE
T ss_pred ccEEEEeEEecCCCeEEEEEEE
Confidence 3455567899999999999974
No 219
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=73.30 E-value=1.1 Score=43.67 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.5
Q ss_pred HhCcccCCeeecCCCceEEEEEc
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L 502 (505)
.++|.-..+||+|+||.||+|.-
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~ 169 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKE 169 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEE
Confidence 35677788999999999999874
No 220
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=73.01 E-value=0.84 Score=43.21 Aligned_cols=24 Identities=8% Similarity=0.256 Sum_probs=18.9
Q ss_pred HhCcccCCeeecCCCceEEEEEcC
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++.|.-...||+|+||.||+|+..
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~ 95 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQ 95 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-
T ss_pred CceEEEcceeecCCCEEEEEEEEC
Confidence 345655678999999999999863
No 221
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=72.80 E-value=1.1 Score=42.21 Aligned_cols=23 Identities=4% Similarity=-0.161 Sum_probs=18.5
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.+|.....||+|+||+||+|+-.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~ 84 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDV 84 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEET
T ss_pred eeeeeeeeccCCCCEEEEEEEEC
Confidence 34556678999999999999843
No 222
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=72.75 E-value=1.1 Score=41.60 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=17.8
Q ss_pred CcccCCeeecCCCceEEEEEcC
Q 010663 482 NFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.|.-...||+|+||.||++.-.
T Consensus 42 ~y~~~~~lg~G~~g~Vy~~~~~ 63 (335)
T 2owb_A 42 RYVRGRFLGKGGFAKCFEISDA 63 (335)
T ss_dssp EEEEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEEeeCCCeEEEEEEEC
Confidence 3445578999999999999764
No 223
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=72.67 E-value=0.85 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=12.1
Q ss_pred CcccCCeeecCCCceEEEEEcC
Q 010663 482 NFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
+|.-...||+|+||+||+|...
T Consensus 38 ~y~~~~~lg~G~~g~Vy~~~~~ 59 (345)
T 2v62_A 38 QWVLGKKIGSGGFGLIYLAFPT 59 (345)
T ss_dssp EEEEEEEC------CEEEEEES
T ss_pred eEEEEeeEeecCCeEEEEEEec
Confidence 4555578999999999999864
No 224
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=72.45 E-value=1 Score=42.52 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=11.4
Q ss_pred ccCCeeecCCCceEEEEEcC
Q 010663 484 AENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 484 ~~~~~iG~G~fG~VYkg~L~ 503 (505)
....+||+|+||.||+|...
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~ 111 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEET 111 (373)
T ss_dssp EEEEECC-----CEEEEEET
T ss_pred ecceEEecCcCEEEEEEEEc
Confidence 44567999999999999753
No 225
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=72.18 E-value=1.2 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.8
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
++|.-...||+|+||.||+|+-
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~ 178 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTE 178 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEE
Confidence 3455567899999999999975
No 226
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=71.63 E-value=1.3 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.743 Sum_probs=20.2
Q ss_pred HhCcccCCeeecCCCceEEEEEcC
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.++|...++||+|+||.||+|...
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~ 206 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVR 206 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET
T ss_pred ccceEEEEEEeeCCCEEEEEEEEC
Confidence 356777789999999999999864
No 227
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=71.42 E-value=1.8 Score=41.00 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.1
Q ss_pred CCeeecCCCceEEEEEcCCC
Q 010663 486 NNIIGRGGFGPFMEQDLKMG 505 (505)
Q Consensus 486 ~~~iG~G~fG~VYkg~L~~G 505 (505)
...||+|+||.||+|.-++|
T Consensus 100 ~~~IG~Gk~a~VY~a~d~~G 119 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADEKG 119 (397)
T ss_dssp EEEEEECSSEEEEEEECTTC
T ss_pred cCEeeeCCceEEEEEECCCC
Confidence 35799999999999987765
No 228
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=71.31 E-value=1.3 Score=43.23 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=11.6
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.-..+||+|+||+||+|.-
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~ 74 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYD 74 (458)
T ss_dssp TTEEECCC-------CEEEEEE
T ss_pred CCeEEeeEeeecCCeEEEEEEE
Confidence 4566678899999999999964
No 229
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=71.24 E-value=1.1 Score=41.81 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=18.6
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
++|.-...||+|+||.||+|+..
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~ 64 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPT 64 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEC
T ss_pred CeEEEEEEecCCCCeEEEEEeec
Confidence 34555678999999999999864
No 230
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=71.12 E-value=1.5 Score=41.72 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.9
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
+.|.-...||+|+||.||+|+-.
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~ 73 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEK 73 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEET
T ss_pred cceEEEEEEecCCCEEEEEEEEC
Confidence 45666678999999999999754
No 231
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=70.78 E-value=1.4 Score=45.07 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.2
Q ss_pred CeeecCCCceEEEEEc
Q 010663 487 NIIGRGGFGPFMEQDL 502 (505)
Q Consensus 487 ~~iG~G~fG~VYkg~L 502 (505)
+.||+|+||+||+|..
T Consensus 375 ~~LG~G~fG~Vy~~~~ 390 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYY 390 (635)
T ss_dssp EEEEECSSEEEEEEEE
T ss_pred CEeccCCCEEEEEEEE
Confidence 4799999999999965
No 232
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=70.49 E-value=2.1 Score=39.57 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.4
Q ss_pred HHHhCcccCCeeecCCCceEEEEEcC
Q 010663 478 QATDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 478 ~AT~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
...++|.-...||+|+||+||+|+..
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~~ 64 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKWR 64 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEET
T ss_pred cccccEEEEeeecCCCCcEEEEEEEc
Confidence 34567888889999999999999863
No 233
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=70.11 E-value=1.7 Score=41.16 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=17.9
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.-...||+|+||+||+|.-
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~ 58 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWD 58 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEe
Confidence 3455567899999999999974
No 234
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=70.08 E-value=1.1 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.8
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.+|.-...||+|+||.||+|+..
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~ 242 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWK 242 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEG
T ss_pred HHceeeeEecCCCCeEEEEEEEc
Confidence 34555678999999999999864
No 235
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=69.52 E-value=1.6 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.2
Q ss_pred HhCcccCCeeecCCCceEEEEEcC
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.++|.-..+||+|+||+||+|+..
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~ 363 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERK 363 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEES
T ss_pred ccceEEEEEEccCCCEEEEEEEEC
Confidence 356777789999999999999864
No 236
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=69.22 E-value=1.7 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.1
Q ss_pred hCcccCCeeecCCCceEEEEEc
Q 010663 481 DNFAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L 502 (505)
+.|.-...||+|+||+||+|.-
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~ 83 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYD 83 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEE
T ss_pred CCeEEEEEeecCCCeEEEEEEE
Confidence 4566667899999999999963
No 237
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=69.06 E-value=1.8 Score=42.73 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=17.2
Q ss_pred HhCcccCCeeecCCCceEEEEEcC
Q 010663 480 TDNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 480 T~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.+.|.-...||+|+||+||+|.-.
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~ 58 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEK 58 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEET
T ss_pred ccceEEEeEecccCCeEEEEEEEC
Confidence 345666678999999999999854
No 238
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=68.03 E-value=2 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.4
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
+.|.-...||+|+||+||+|...
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~ 412 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYM 412 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEEC
T ss_pred ccEEEeeEEeeCCCEEEEEEEEe
Confidence 44555678999999999999863
No 239
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=65.63 E-value=2.1 Score=40.85 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred CeeecCCCceEEEEEcC
Q 010663 487 NIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 487 ~~iG~G~fG~VYkg~L~ 503 (505)
.+||+|+||+||+|.-.
T Consensus 68 ~~LG~G~~g~V~~~~~~ 84 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNK 84 (400)
T ss_dssp EEEEEETTEEEEEEEET
T ss_pred ceeeeccCeEEEEEEEC
Confidence 57999999999999753
No 240
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=64.88 E-value=2.6 Score=42.10 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=9.5
Q ss_pred cCCeeecCCCceEEEEEcC
Q 010663 485 ENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 485 ~~~~iG~G~fG~VYkg~L~ 503 (505)
..++||+|+||.||||...
T Consensus 340 ~~~~LG~G~fg~Vy~~~~~ 358 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSYL 358 (540)
T ss_dssp --------CCEEEEEEECS
T ss_pred CCCEEeeCCCEEEEEEEEC
Confidence 3568999999999999654
No 241
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=64.87 E-value=2 Score=42.33 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=14.8
Q ss_pred CcccCCeeecCCCceEEEEEcC
Q 010663 482 NFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 482 ~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
.|.-...||+|+||+||+|+-.
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~ 59 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDK 59 (494)
T ss_dssp HEEEEEEEECC---EEEEEEET
T ss_pred CeEEeeEEecCCCEEEEEEEEC
Confidence 4555678999999999999753
No 242
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=64.51 E-value=2.4 Score=38.92 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.4
Q ss_pred cccCCeeecCCCceEEEEEc
Q 010663 483 FAENNIIGRGGFGPFMEQDL 502 (505)
Q Consensus 483 F~~~~~iG~G~fG~VYkg~L 502 (505)
|.-...||+|+||.||+|..
T Consensus 43 y~~~~~lg~G~~g~V~~~~~ 62 (326)
T 2w1i_A 43 LKFLQQLGKGNFGSVEMCRY 62 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEE
T ss_pred ceeeeeeccCCCeEEEEEEe
Confidence 44456799999999999984
No 243
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=63.68 E-value=2.8 Score=42.57 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.2
Q ss_pred eeecCCCceEEEEEcC
Q 010663 488 IIGRGGFGPFMEQDLK 503 (505)
Q Consensus 488 ~iG~G~fG~VYkg~L~ 503 (505)
.||+|+||.||+|+..
T Consensus 343 ~LG~G~fG~Vy~~~~~ 358 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYR 358 (613)
T ss_dssp EEEECSSSEEEEEEEE
T ss_pred EEecCCCcEEEEEEEe
Confidence 6999999999999763
No 244
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=57.05 E-value=3.3 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.7
Q ss_pred hCcccCCeeecCCCceEEEEEcC
Q 010663 481 DNFAENNIIGRGGFGPFMEQDLK 503 (505)
Q Consensus 481 ~~F~~~~~iG~G~fG~VYkg~L~ 503 (505)
+.|.-...||+|+||+||+|...
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~ 102 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDR 102 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEG
T ss_pred CceEEEEEEeeCCCeEEEEEEEc
Confidence 45666678999999999999753
No 245
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.66 E-value=43 Score=24.27 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=16.0
Q ss_pred ccccCCCCCCEEEccCCccccccCccccCCCCCCeEecc
Q 010663 161 PAISNLSNLLTLVLEGNKLTGPIPTTFGRLQKLQGLFLA 199 (505)
Q Consensus 161 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 199 (505)
..|.+|++|+.+.|-.+ ++..-...|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444455554444332 222233344444444444443
No 246
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.45 E-value=49 Score=23.97 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=24.9
Q ss_pred ccccccCccccCCCCCCeEeccCccccccCCccCCCCCCCCeEeccC
Q 010663 178 KLTGPIPTTFGRLQKLQGLFLAFNKLVGSCPDELCHLDRLDKLVLLG 224 (505)
Q Consensus 178 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 224 (505)
.++..-...|.+|.+|+.+.+-.+ ++..-...|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 334344455666666666666543 2323344566666666666554
Done!