Query 010664
Match_columns 504
No_of_seqs 363 out of 1802
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311 Predicted E3 ubiquitin 100.0 8.1E-33 1.8E-37 279.4 11.6 344 72-464 20-373 (381)
2 KOG2660 Locus-specific chromos 99.1 1.3E-10 2.8E-15 118.3 9.7 80 86-166 5-87 (331)
3 smart00504 Ubox Modified RING 99.1 9.6E-11 2.1E-15 92.1 4.9 62 96-160 1-62 (63)
4 PF15227 zf-C3HC4_4: zinc fing 99.0 1.3E-10 2.7E-15 85.7 3.4 39 99-138 1-42 (42)
5 TIGR00599 rad18 DNA repair pro 99.0 2.3E-10 4.9E-15 120.9 5.7 70 90-162 20-89 (397)
6 PF04564 U-box: U-box domain; 99.0 3.3E-10 7.1E-15 92.8 4.7 67 94-162 2-68 (73)
7 PLN03208 E3 ubiquitin-protein 99.0 3.4E-10 7.4E-15 108.5 4.0 49 95-144 17-80 (193)
8 PF14835 zf-RING_6: zf-RING of 98.9 2.1E-10 4.6E-15 91.2 0.7 63 92-158 3-65 (65)
9 KOG0823 Predicted E3 ubiquitin 98.9 4.4E-10 9.5E-15 109.7 2.6 49 95-144 46-96 (230)
10 KOG0287 Postreplication repair 98.9 5.5E-10 1.2E-14 113.7 2.4 68 91-161 18-85 (442)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 9.5E-10 2.1E-14 79.3 2.8 39 99-138 1-39 (39)
12 KOG0317 Predicted E3 ubiquitin 98.8 1.9E-09 4.1E-14 108.1 3.8 49 95-145 238-286 (293)
13 KOG2177 Predicted E3 ubiquitin 98.8 2.5E-09 5.5E-14 103.8 2.9 86 90-180 7-104 (386)
14 PF13639 zf-RING_2: Ring finge 98.7 4.1E-09 8.8E-14 77.8 1.6 41 98-139 2-44 (44)
15 KOG0320 Predicted E3 ubiquitin 98.7 5.4E-09 1.2E-13 98.5 2.7 49 94-144 129-179 (187)
16 PF00097 zf-C3HC4: Zinc finger 98.7 8.3E-09 1.8E-13 74.7 3.1 40 99-138 1-41 (41)
17 cd00162 RING RING-finger (Real 98.7 1.5E-08 3.2E-13 72.8 3.5 44 98-141 1-44 (45)
18 PHA02929 N1R/p28-like protein; 98.6 1.8E-08 3.9E-13 100.1 4.1 49 95-144 173-228 (238)
19 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.1E-08 4.5E-13 76.1 3.3 46 96-143 2-48 (50)
20 COG5432 RAD18 RING-finger-cont 98.6 2.4E-08 5.2E-13 100.2 4.4 67 92-161 21-87 (391)
21 PHA02926 zinc finger-like prot 98.4 1.5E-07 3.3E-12 91.7 3.3 50 93-143 167-230 (242)
22 smart00184 RING Ring finger. E 98.4 2.8E-07 6E-12 63.8 3.2 39 99-138 1-39 (39)
23 PF13445 zf-RING_UBOX: RING-ty 98.4 1.8E-07 3.9E-12 69.4 1.8 36 99-136 1-43 (43)
24 KOG2164 Predicted E3 ubiquitin 98.3 2.9E-07 6.3E-12 98.7 4.0 48 96-144 186-237 (513)
25 COG5574 PEX10 RING-finger-cont 98.3 1.9E-07 4.2E-12 92.9 2.4 50 94-144 213-263 (271)
26 PF14634 zf-RING_5: zinc-RING 98.3 4.2E-07 9.1E-12 67.3 3.1 42 98-140 1-44 (44)
27 KOG0978 E3 ubiquitin ligase in 98.2 4.2E-07 9.1E-12 101.4 2.2 63 83-146 630-692 (698)
28 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.1E-06 2.3E-11 72.3 2.9 41 98-139 21-73 (73)
29 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.6E-11 88.8 4.4 49 96-144 3-55 (309)
30 KOG4628 Predicted E3 ubiquitin 98.1 9.3E-07 2E-11 91.9 2.4 47 97-143 230-278 (348)
31 COG5540 RING-finger-containing 98.1 1.7E-06 3.7E-11 87.6 2.8 48 97-144 324-373 (374)
32 KOG0297 TNF receptor-associate 97.8 1.2E-05 2.5E-10 85.8 3.4 72 93-165 18-89 (391)
33 PF11789 zf-Nse: Zinc-finger o 97.7 1.7E-05 3.7E-10 62.3 2.3 44 94-137 9-53 (57)
34 COG5152 Uncharacterized conser 97.7 1.8E-05 3.9E-10 76.1 2.6 62 95-160 195-256 (259)
35 COG5243 HRD1 HRD ubiquitin lig 97.6 2.6E-05 5.7E-10 81.0 2.9 47 95-143 286-345 (491)
36 KOG4159 Predicted E3 ubiquitin 97.6 3.3E-05 7.1E-10 82.2 3.4 51 92-144 80-130 (398)
37 COG5222 Uncharacterized conser 97.6 4.8E-05 1E-09 77.1 4.1 44 97-140 275-318 (427)
38 KOG0824 Predicted E3 ubiquitin 97.6 3.1E-05 6.7E-10 78.7 2.3 47 97-144 8-54 (324)
39 KOG0802 E3 ubiquitin ligase [P 97.5 3.4E-05 7.4E-10 85.4 1.7 47 95-143 290-341 (543)
40 PF12861 zf-Apc11: Anaphase-pr 97.5 8.6E-05 1.9E-09 62.8 3.4 48 96-143 21-82 (85)
41 KOG2879 Predicted E3 ubiquitin 97.4 0.0001 2.3E-09 74.0 3.0 49 95-143 238-287 (298)
42 KOG1813 Predicted E3 ubiquitin 97.3 9.8E-05 2.1E-09 74.9 2.2 46 96-143 241-286 (313)
43 KOG4367 Predicted Zn-finger pr 97.3 0.00012 2.6E-09 77.4 2.7 35 93-128 1-35 (699)
44 KOG1002 Nucleotide excision re 97.2 0.00012 2.5E-09 79.1 1.5 95 5-143 488-586 (791)
45 KOG4172 Predicted E3 ubiquitin 96.8 0.00041 8.8E-09 53.9 0.8 46 97-143 8-54 (62)
46 KOG0804 Cytoplasmic Zn-finger 96.8 0.00047 1E-08 73.5 1.3 48 93-143 172-222 (493)
47 KOG1645 RING-finger-containing 96.7 0.0023 4.9E-08 67.7 5.7 61 96-157 4-69 (463)
48 KOG0828 Predicted E3 ubiquitin 96.7 0.00076 1.7E-08 72.5 1.8 50 94-143 569-634 (636)
49 KOG4265 Predicted E3 ubiquitin 96.3 0.0019 4.2E-08 67.3 2.1 45 97-143 291-336 (349)
50 KOG0825 PHD Zn-finger protein 96.3 0.001 2.2E-08 74.8 -0.0 48 96-144 123-172 (1134)
51 KOG1039 Predicted E3 ubiquitin 96.3 0.0019 4.2E-08 67.7 2.1 50 94-143 159-221 (344)
52 COG5219 Uncharacterized conser 96.3 0.0016 3.5E-08 74.5 1.3 49 95-143 1468-1523(1525)
53 KOG4739 Uncharacterized protei 96.1 0.0062 1.3E-07 60.6 4.6 44 97-143 4-48 (233)
54 KOG1785 Tyrosine kinase negati 96.0 0.0028 6.1E-08 66.7 1.5 48 98-146 371-419 (563)
55 KOG1734 Predicted RING-contain 95.7 0.0031 6.7E-08 63.6 0.4 49 96-144 224-282 (328)
56 KOG0827 Predicted E3 ubiquitin 95.7 0.011 2.4E-07 62.3 4.2 46 98-143 6-56 (465)
57 PF11793 FANCL_C: FANCL C-term 95.6 0.003 6.6E-08 51.5 -0.2 48 96-143 2-66 (70)
58 smart00744 RINGv The RING-vari 95.4 0.013 2.8E-07 44.6 2.7 41 98-139 1-49 (49)
59 PF04641 Rtf2: Rtf2 RING-finge 95.2 0.014 2.9E-07 59.1 2.8 56 94-151 111-169 (260)
60 KOG4185 Predicted E3 ubiquitin 95.0 0.02 4.4E-07 58.3 3.7 64 96-160 3-76 (296)
61 KOG1571 Predicted E3 ubiquitin 95.0 0.012 2.6E-07 61.6 1.9 45 94-143 303-347 (355)
62 COG5194 APC11 Component of SCF 94.9 0.021 4.5E-07 47.9 2.7 31 113-144 52-82 (88)
63 KOG4692 Predicted E3 ubiquitin 94.8 0.017 3.7E-07 60.3 2.4 48 94-143 420-467 (489)
64 KOG3039 Uncharacterized conser 94.7 0.024 5.2E-07 56.6 3.2 49 95-144 220-271 (303)
65 KOG4275 Predicted E3 ubiquitin 94.7 0.0062 1.3E-07 62.0 -1.0 42 96-143 300-342 (350)
66 KOG3002 Zn finger protein [Gen 94.6 0.022 4.7E-07 59.0 2.7 63 94-166 46-110 (299)
67 KOG1001 Helicase-like transcri 94.4 0.015 3.3E-07 66.2 1.1 45 97-143 455-500 (674)
68 KOG3800 Predicted E3 ubiquitin 94.0 0.044 9.5E-07 56.0 3.2 46 98-143 2-51 (300)
69 KOG1493 Anaphase-promoting com 93.9 0.014 3.1E-07 48.4 -0.3 46 98-143 22-81 (84)
70 KOG0826 Predicted E3 ubiquitin 93.7 0.036 7.9E-07 57.4 2.2 46 97-143 301-346 (357)
71 PF14570 zf-RING_4: RING/Ubox 93.5 0.066 1.4E-06 40.8 2.7 44 99-142 1-47 (48)
72 PF14447 Prok-RING_4: Prokaryo 93.5 0.035 7.6E-07 43.4 1.2 46 95-144 6-51 (55)
73 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.054 1.2E-06 41.5 1.7 45 96-141 2-50 (50)
74 KOG1941 Acetylcholine receptor 93.1 0.034 7.5E-07 58.7 0.8 49 94-142 363-415 (518)
75 KOG4445 Uncharacterized conser 93.0 0.026 5.7E-07 57.8 -0.3 49 95-143 114-186 (368)
76 KOG3161 Predicted E3 ubiquitin 92.4 0.066 1.4E-06 59.7 1.8 42 93-139 8-53 (861)
77 KOG2930 SCF ubiquitin ligase, 92.2 0.083 1.8E-06 46.3 1.8 29 114-143 80-108 (114)
78 KOG1814 Predicted E3 ubiquitin 91.9 0.1 2.2E-06 55.6 2.5 47 95-141 183-238 (445)
79 KOG3970 Predicted E3 ubiquitin 91.8 0.21 4.6E-06 49.5 4.4 47 97-144 51-106 (299)
80 PF05290 Baculo_IE-1: Baculovi 91.8 0.14 3.1E-06 46.9 3.0 50 95-144 79-133 (140)
81 KOG4362 Transcriptional regula 91.2 0.074 1.6E-06 60.2 0.6 67 91-159 16-84 (684)
82 COG5236 Uncharacterized conser 91.0 0.23 4.9E-06 52.1 3.8 47 95-142 60-107 (493)
83 COG5175 MOT2 Transcriptional r 90.7 0.14 3E-06 53.4 2.0 46 98-143 16-64 (480)
84 KOG2817 Predicted E3 ubiquitin 90.1 0.2 4.4E-06 53.2 2.7 49 93-142 331-384 (394)
85 COG5220 TFB3 Cdk activating ki 89.4 0.14 3E-06 51.2 0.7 48 96-143 10-64 (314)
86 PHA03096 p28-like protein; Pro 87.6 0.31 6.7E-06 50.2 2.0 44 97-140 179-231 (284)
87 PF10367 Vps39_2: Vacuolar sor 87.6 0.19 4.1E-06 43.0 0.3 32 94-125 76-108 (109)
88 KOG2932 E3 ubiquitin ligase in 87.3 0.26 5.7E-06 50.9 1.2 45 96-143 90-134 (389)
89 KOG2114 Vacuolar assembly/sort 87.3 0.3 6.4E-06 56.3 1.7 43 95-141 839-881 (933)
90 KOG0298 DEAD box-containing he 87.1 0.16 3.5E-06 60.6 -0.4 50 92-142 1149-1198(1394)
91 PF08746 zf-RING-like: RING-li 86.7 0.73 1.6E-05 34.2 3.0 40 99-138 1-43 (43)
92 KOG3039 Uncharacterized conser 85.5 0.57 1.2E-05 47.2 2.5 36 93-129 40-75 (303)
93 PF07800 DUF1644: Protein of u 83.7 0.9 1.9E-05 42.9 2.8 32 96-128 2-46 (162)
94 KOG1940 Zn-finger protein [Gen 81.9 0.84 1.8E-05 46.8 2.0 44 96-140 158-204 (276)
95 PF11543 UN_NPL4: Nuclear pore 79.3 1.4 3E-05 36.9 2.2 58 383-462 18-75 (80)
96 PHA02862 5L protein; Provision 79.0 1.7 3.7E-05 40.5 2.8 45 98-144 4-54 (156)
97 PF05883 Baculo_RING: Baculovi 77.6 1.2 2.6E-05 41.1 1.4 34 96-129 26-67 (134)
98 PF03854 zf-P11: P-11 zinc fin 77.4 1.4 3E-05 33.7 1.4 42 98-143 4-46 (50)
99 KOG1428 Inhibitor of type V ad 75.3 2.4 5.1E-05 51.8 3.2 48 96-143 3486-3544(3738)
100 KOG1952 Transcription factor N 74.0 3.8 8.2E-05 47.7 4.4 47 94-140 189-244 (950)
101 PHA02825 LAP/PHD finger-like p 73.9 3.4 7.4E-05 39.2 3.4 47 96-144 8-60 (162)
102 KOG2034 Vacuolar sorting prote 70.5 2.1 4.7E-05 49.8 1.5 38 92-129 813-851 (911)
103 PF10272 Tmpp129: Putative tra 69.0 3.1 6.8E-05 44.3 2.2 29 115-143 311-351 (358)
104 KOG2169 Zn-finger transcriptio 68.8 3.7 8.1E-05 46.9 2.9 69 92-162 302-374 (636)
105 KOG1815 Predicted E3 ubiquitin 67.1 3.1 6.8E-05 45.3 1.8 37 94-130 68-104 (444)
106 KOG1100 Predicted E3 ubiquitin 66.7 4 8.7E-05 40.2 2.3 39 99-143 161-200 (207)
107 KOG1812 Predicted E3 ubiquitin 66.4 4.2 9.1E-05 43.7 2.6 48 96-143 146-203 (384)
108 KOG3899 Uncharacterized conser 64.3 3.9 8.5E-05 42.2 1.8 29 115-143 325-365 (381)
109 KOG3113 Uncharacterized conser 64.1 5.6 0.00012 40.4 2.8 55 95-152 110-167 (293)
110 COG3813 Uncharacterized protei 62.4 6.2 0.00013 32.8 2.2 25 116-143 28-52 (84)
111 KOG1812 Predicted E3 ubiquitin 61.6 3.8 8.2E-05 44.0 1.2 43 94-138 304-351 (384)
112 COG5109 Uncharacterized conser 61.5 5.9 0.00013 41.4 2.4 49 92-141 332-385 (396)
113 KOG4718 Non-SMC (structural ma 61.5 4.5 9.8E-05 40.0 1.5 45 97-142 182-226 (235)
114 KOG0309 Conserved WD40 repeat- 60.6 6 0.00013 45.6 2.5 47 96-143 1028-1076(1081)
115 KOG3579 Predicted E3 ubiquitin 60.1 3.5 7.5E-05 42.5 0.5 35 95-130 267-305 (352)
116 PF07975 C1_4: TFIIH C1-like d 58.4 8.9 0.00019 29.7 2.4 27 112-139 24-50 (51)
117 PF14569 zf-UDP: Zinc-binding 58.0 9.6 0.00021 32.1 2.7 48 96-143 9-62 (80)
118 KOG0825 PHD Zn-finger protein 57.4 8.1 0.00018 44.8 2.9 47 96-142 96-153 (1134)
119 KOG3268 Predicted E3 ubiquitin 56.9 7.6 0.00017 37.5 2.2 49 96-144 165-229 (234)
120 PF06906 DUF1272: Protein of u 55.0 10 0.00023 29.9 2.3 44 98-144 7-53 (57)
121 PF12906 RINGv: RING-variant d 53.9 8 0.00017 29.1 1.5 39 99-138 1-47 (47)
122 PF07191 zinc-ribbons_6: zinc- 53.5 1.7 3.6E-05 35.8 -2.4 41 96-143 1-41 (70)
123 PLN02189 cellulose synthase 49.7 11 0.00024 45.2 2.4 47 97-143 35-87 (1040)
124 KOG3053 Uncharacterized conser 48.6 14 0.0003 37.7 2.6 49 95-143 19-82 (293)
125 PF10571 UPF0547: Uncharacteri 47.1 10 0.00023 25.3 1.0 22 98-119 2-24 (26)
126 PF10235 Cript: Microtubule-as 45.4 9.9 0.00021 32.9 0.9 36 97-143 45-80 (90)
127 PLN02638 cellulose synthase A 44.7 15 0.00032 44.3 2.5 47 97-143 18-70 (1079)
128 KOG2807 RNA polymerase II tran 41.9 16 0.00034 38.5 1.9 40 99-139 333-374 (378)
129 PLN02436 cellulose synthase A 40.9 18 0.00039 43.6 2.4 46 98-143 38-89 (1094)
130 PF05605 zf-Di19: Drought indu 40.1 16 0.00035 27.9 1.3 38 96-141 2-40 (54)
131 PF06844 DUF1244: Protein of u 38.2 18 0.00039 29.6 1.3 12 118-129 11-22 (68)
132 PF10446 DUF2457: Protein of u 37.6 28 0.0006 38.1 3.0 18 19-36 36-53 (458)
133 PLN02195 cellulose synthase A 36.9 24 0.00052 42.2 2.6 46 98-143 8-59 (977)
134 PF11816 DUF3337: Domain of un 36.1 1.3E+02 0.0027 31.7 7.6 56 347-402 198-271 (331)
135 KOG4185 Predicted E3 ubiquitin 35.6 7.5 0.00016 39.6 -1.6 44 97-141 208-265 (296)
136 TIGR00622 ssl1 transcription f 34.6 26 0.00057 31.5 1.9 42 97-139 56-110 (112)
137 PLN02400 cellulose synthase 34.1 20 0.00044 43.2 1.5 47 97-143 37-89 (1085)
138 PLN02915 cellulose synthase A 33.8 27 0.00058 42.1 2.3 47 97-143 16-68 (1044)
139 COG0068 HypF Hydrogenase matur 33.1 23 0.0005 40.9 1.6 50 95-144 100-185 (750)
140 KOG0824 Predicted E3 ubiquitin 32.6 13 0.00029 38.7 -0.3 48 95-143 104-151 (324)
141 cd01803 Ubiquitin Ubiquitin. U 31.8 55 0.0012 25.8 3.3 43 365-413 3-45 (76)
142 PF14353 CpXC: CpXC protein 31.6 31 0.00067 30.8 1.9 46 97-143 2-49 (128)
143 PF04216 FdhE: Protein involve 31.1 8.7 0.00019 39.4 -2.0 44 97-142 173-221 (290)
144 cd01612 APG12_C Ubiquitin-like 30.6 1.5E+02 0.0033 25.2 5.9 48 364-413 3-51 (87)
145 PF00240 ubiquitin: Ubiquitin 30.3 65 0.0014 25.1 3.4 31 383-413 10-40 (69)
146 cd01806 Nedd8 Nebb8-like ubiq 30.1 71 0.0015 25.2 3.6 42 365-412 3-44 (76)
147 cd01798 parkin_N amino-termina 29.9 52 0.0011 26.0 2.8 30 383-412 13-42 (70)
148 KOG2979 Protein involved in DN 29.8 27 0.00059 35.6 1.3 46 95-140 175-221 (262)
149 PF09026 CENP-B_dimeris: Centr 29.6 18 0.00038 31.7 0.0 6 122-127 54-59 (101)
150 PF01363 FYVE: FYVE zinc finge 29.3 19 0.00041 28.6 0.1 33 95-127 8-43 (69)
151 PF14438 SM-ATX: Ataxin 2 SM d 28.9 11 0.00024 30.8 -1.3 33 463-498 2-34 (77)
152 KOG0314 Predicted E3 ubiquitin 28.3 36 0.00078 37.4 2.0 66 90-157 213-280 (448)
153 PF12773 DZR: Double zinc ribb 28.0 40 0.00087 25.0 1.7 26 118-143 13-40 (50)
154 smart00064 FYVE Protein presen 27.4 41 0.00088 26.5 1.7 33 97-129 11-46 (68)
155 TIGR01562 FdhE formate dehydro 27.2 18 0.00038 37.9 -0.5 44 96-141 184-233 (305)
156 cd00065 FYVE FYVE domain; Zinc 27.1 36 0.00077 25.8 1.3 32 98-129 4-38 (57)
157 KOG2068 MOT2 transcription fac 26.9 44 0.00095 35.3 2.3 46 97-143 250-298 (327)
158 PF14446 Prok-RING_1: Prokaryo 26.9 50 0.0011 26.0 2.0 41 97-142 6-51 (54)
159 PRK04023 DNA polymerase II lar 25.9 33 0.00071 41.2 1.3 45 96-144 626-675 (1121)
160 KOG1829 Uncharacterized conser 25.8 27 0.00058 39.6 0.5 42 95-140 510-558 (580)
161 PRK06266 transcription initiat 25.8 37 0.0008 32.7 1.4 14 131-144 135-148 (178)
162 KOG2462 C2H2-type Zn-finger pr 25.7 27 0.00058 36.0 0.5 53 94-146 159-229 (279)
163 PF11931 DUF3449: Domain of un 25.6 30 0.00064 34.0 0.7 44 80-124 85-134 (196)
164 PF02318 FYVE_2: FYVE-type zin 24.5 33 0.00071 30.6 0.8 45 96-140 54-102 (118)
165 COG5627 MMS21 DNA repair prote 24.1 52 0.0011 33.3 2.1 43 95-137 188-231 (275)
166 PRK00647 hypothetical protein; 24.0 1.1E+02 0.0025 26.7 4.0 38 359-412 27-64 (96)
167 TIGR00143 hypF [NiFe] hydrogen 23.6 43 0.00092 39.0 1.6 48 96-143 68-151 (711)
168 PF04931 DNA_pol_phi: DNA poly 23.5 65 0.0014 37.8 3.1 13 187-199 738-750 (784)
169 cd01776 Rin1_RA Ubiquitin doma 23.2 1.1E+02 0.0024 26.2 3.6 36 383-418 18-54 (87)
170 PF04423 Rad50_zn_hook: Rad50 22.7 56 0.0012 25.0 1.6 12 133-144 21-32 (54)
171 PF10497 zf-4CXXC_R1: Zinc-fin 22.7 80 0.0017 27.9 2.8 28 116-143 37-72 (105)
172 COG2153 ElaA Predicted acyltra 21.9 1.8E+02 0.0038 27.6 5.0 65 388-476 12-83 (155)
173 KOG0827 Predicted E3 ubiquitin 21.9 12 0.00025 40.3 -3.0 45 98-143 198-245 (465)
174 COG5183 SSM4 Protein involved 21.5 72 0.0016 37.6 2.8 47 97-144 13-67 (1175)
175 COG0450 AhpC Peroxiredoxin [Po 21.3 65 0.0014 31.7 2.1 57 430-487 101-168 (194)
176 KOG3842 Adaptor protein Pellin 21.3 69 0.0015 33.8 2.4 32 112-144 375-415 (429)
177 PF02594 DUF167: Uncharacteris 20.5 83 0.0018 26.2 2.4 38 359-412 26-63 (77)
178 cd00350 rubredoxin_like Rubred 20.5 66 0.0014 22.2 1.5 11 131-141 16-26 (33)
179 PF10146 zf-C4H2: Zinc finger- 20.4 71 0.0015 32.1 2.3 25 119-144 196-220 (230)
180 PRK03564 formate dehydrogenase 20.3 36 0.00079 35.7 0.2 45 95-140 186-234 (309)
181 KOG3476 Microtubule-associated 20.0 22 0.00047 30.6 -1.2 37 97-144 55-91 (100)
No 1
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.1e-33 Score=279.43 Aligned_cols=344 Identities=35% Similarity=0.502 Sum_probs=258.8
Q ss_pred CCCCCCCCCCcchhhhhhhccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCC
Q 010664 72 DRSRSSGDGEKDEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDD 151 (504)
Q Consensus 72 ~~s~s~s~~~~~e~~~v~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n 151 (504)
++..++...+..+ +.+.+..+..++.|+||+++++..+++..|+|.||..||...++.+.+.||.||+.+.+++.|+++
T Consensus 20 er~p~~~~~d~~E-i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 20 ERSPSSYNGDPSE-IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hcChhhhcCCchh-heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 3444454444444 788889999999999999999999988899999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHhhchHhhHHHHhhccHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCcchhhhhccCCCCCCCCCCCCCC
Q 010664 152 LNYDALIAALYPDIDKYEEEELAFQDEEAARN-KQIQASIAQTFQRQTEALGRKRTPKSTSALRRSHGRYRDTPLRGRRN 230 (504)
Q Consensus 152 ~~L~~lI~~l~p~c~~~eeel~lfCeed~~~~-k~i~~~l~~~~~rqs~aL~kkRt~k~aaa~rRsr~~~R~~~~r~r~~ 230 (504)
+.+.+||.++++..+.++....-|-+.+.... ++|+.++++..++|+..+.++++.... |+.+. -.+++++++
T Consensus 99 p~fdaLis~i~~sie~~e~~q~~~~ekd~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~----~s~r~--g~Gs~~~gn 172 (381)
T KOG0311|consen 99 PNFDALISKIYPSIEEYEAPQPRFMEKDDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL----RSIRW--GGGSRRRGN 172 (381)
T ss_pred ccHHHHHHHHhccHHHHhccchhHHhhHHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc----ccccc--cCCCCCCCC
Confidence 99999999999998888887777777655444 459999999999999999998877443 22222 123455555
Q ss_pred Cccc------ccCCCCCCCCCCCCCCCCCCCccccCccCCccccccccCCCCC-CCCCCCCCCCCCCCCCCchhhhcccC
Q 010664 231 YRMT------ELQGSDENDDANGDAGKDSSSADERSTEVRPKRRKRWYGARFS-QSSSAAAGTDGGGDENDSEVHRESMG 303 (504)
Q Consensus 231 ~~~~------~~~~~~~~dd~~~d~~~dssS~d~~s~~~~~~r~~~~~~~~~~-~~ss~~~~~~~~~~e~d~~~~~e~~~ 303 (504)
.+.. ++...+..++.| +.++++++ |+. -. .++..++...... .+++.++..++.++.+|.+..++..+
T Consensus 173 ~r~~~~s~~~a~~ea~~~~~~n-~rg~~ss~-d~~-~~--~~~~~~S~d~~~~~~~~s~as~~~~~~~~a~te~~~~~~~ 247 (381)
T KOG0311|consen 173 VRNVEQSKKSAPKEADGNDDEN-DRGKDSSS-DEL-MD--FPREIRSSDREQTHPSSSGASMNDSNCAGADTEDVRDSST 247 (381)
T ss_pred cccchhccccCCccCCCccccc-cccccccc-ccc-cc--ccccccccccccCCCCccccccCCCcccCCCCcccccccc
Confidence 5542 222211222222 33456655 333 22 2333333322211 23445566788889999988899999
Q ss_pred CcCCcCCCcccccccCCCcCCCcccCCc-CCCCCCcccchhhHHHHHHHhhhccccCceeEEEEEEecccCCCCCCCCCc
Q 010664 304 ASVGLIGPSERLAWGKGGIRSHTRHGSV-SGSNGKNARNNRLSKLVDYLQSLEEKDDQLDMHLVLVSLDEQRIPGLQQPY 382 (504)
Q Consensus 304 ~~~~~~~~~~~lawg~~g~rs~~r~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~l~~~d~~~~p~l~~py 382 (504)
.++++||+.+..+||+||+|+.||+|++ .|.-..++|.++..++++|++..+...++
T Consensus 248 i~r~~v~~~e~~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~~---------------------- 305 (381)
T KOG0311|consen 248 ISRTLVWNRESSESGRGGTRSNTRNGNNKMGRKSLAVRNALEVRLSEYDGSVEGTSNI---------------------- 305 (381)
T ss_pred cccccccccccchhccCCccccccccccccccchhhhhHHHHHHhhhhcccccccccc----------------------
Confidence 9999999999999999999999999995 34445667999999999999955555554
Q ss_pred cccCCcccHHHHHHHHHhhhcccccceEEEEEecccccCCCCCCCCCcccCCCcchhhhccccccccccccc-cCCCCce
Q 010664 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NLGHGFL 461 (504)
Q Consensus 383 l~c~pt~~v~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~-~~~~g~l 461 (504)
|||.+..+..+++|+++.....-+.. .-+-.+.-|.|.+|++.+|++.+||+.++.. ...++.+
T Consensus 306 --------------~~~~~~~~~~~~~~~~~~~~~~~d~~-~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m 370 (381)
T KOG0311|consen 306 --------------KVAKKKPLKREEVELLVELIHPLDTA-SENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPM 370 (381)
T ss_pred --------------cccccCCccccccccccccccccccc-ccccceeEeecCCCceEEecccchHHHHhhhhhhcccch
Confidence 89999999999999999887322211 1112345678899999999999999999998 8888887
Q ss_pred EEE
Q 010664 462 VRY 464 (504)
Q Consensus 462 ~~~ 464 (504)
+-|
T Consensus 371 ~l~ 373 (381)
T KOG0311|consen 371 ELS 373 (381)
T ss_pred hhh
Confidence 755
No 2
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=99.15 E-value=1.3e-10 Score=118.29 Aligned_cols=80 Identities=29% Similarity=0.678 Sum_probs=69.6
Q ss_pred hhhhhccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCc---ccCCCCHHHHHHHHHHh
Q 010664 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR---RSLRDDLNYDALIAALY 162 (504)
Q Consensus 86 ~~v~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~---~~l~~n~~L~~lI~~l~ 162 (504)
..+....+...++|.+|..+|.++.+|+.|.|+||..||.+++.. ...||.|...+... ..++.|..++.|+.+|+
T Consensus 5 ~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLV 83 (331)
T KOG2660|consen 5 RRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLV 83 (331)
T ss_pred hhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHc
Confidence 345566778889999999999999999999999999999999995 78999999977543 45889999999999999
Q ss_pred hchH
Q 010664 163 PDID 166 (504)
Q Consensus 163 p~c~ 166 (504)
|...
T Consensus 84 Pgl~ 87 (331)
T KOG2660|consen 84 PGLQ 87 (331)
T ss_pred chHH
Confidence 9854
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.10 E-value=9.6e-11 Score=92.05 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=54.4
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHH
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAA 160 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~ 160 (504)
++.||||++++.+||. ++|||+||+.||..|+.. ...||.|+..+. ...+.++..+++.|..
T Consensus 1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~-~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT-HEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC-hhhceeCHHHHHHHHh
Confidence 3689999999999995 999999999999999985 678999999986 4778889888887753
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.05 E-value=1.3e-10 Score=85.67 Aligned_cols=39 Identities=36% Similarity=1.095 Sum_probs=30.8
Q ss_pred ccccccccccceeccCCCCcccHHHHHHHhhcCC---CCCCCC
Q 010664 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMRLGN---NECPAC 138 (504)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~---~~CP~C 138 (504)
||||+++|.+||+ ++|||+||..||..|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999996 99999999999999997532 479987
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2.3e-10 Score=120.87 Aligned_cols=70 Identities=23% Similarity=0.603 Sum_probs=61.3
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
+..++..+.|+||+++|.+|+ +++|||+||..||..|+.. ...||+|+..+. ...++.|..|.+||+.+.
T Consensus 20 l~~Le~~l~C~IC~d~~~~Pv-itpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~-~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPV-LTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ-ESKLRSNWLVSEIVESFK 89 (397)
T ss_pred ccccccccCCCcCchhhhCcc-CCCCCCchhHHHHHHHHhC-CCCCCCCCCccc-cccCccchHHHHHHHHHH
Confidence 456778899999999999999 5999999999999999984 468999999987 457899999999998754
No 6
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.01 E-value=3.3e-10 Score=92.82 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=54.5
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.|.||||..++.+|| +++|||+|++.||..|+..+...||.|+..+. ...+.+|..|++.|+.+.
T Consensus 2 P~~f~CpIt~~lM~dPV-i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPV-ILPSGHTYERSAIERWLEQNGGTDPFTRQPLS-ESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp SGGGB-TTTSSB-SSEE-EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S-GGGSEE-HHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCce-eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC-cccceECHHHHHHHHHHH
Confidence 35789999999999999 59999999999999999976799999999988 478999999999988764
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.97 E-value=3.4e-10 Score=108.50 Aligned_cols=49 Identities=33% Similarity=0.760 Sum_probs=42.2
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhc---------------CCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL---------------GNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~---------------~~~~CP~CR~~~~~ 144 (504)
..+.|+||++.+.+|+ +++|||.||+.||..|+.. ....||+|+..+..
T Consensus 17 ~~~~CpICld~~~dPV-vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDPV-VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCcE-EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4678999999999999 5999999999999999852 23589999998863
No 8
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.93 E-value=2.1e-10 Score=91.25 Aligned_cols=63 Identities=27% Similarity=0.719 Sum_probs=36.4
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHH
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALI 158 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI 158 (504)
.+++-+.|++|.+++++||.+..|.|.||+.||...+. ..||+|..+.. .++++.|..|++||
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw-~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAW-IQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHH-HHHHHhhhhhhccC
Confidence 35567899999999999998889999999999988665 46999999987 57899999999886
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.4e-10 Score=109.72 Aligned_cols=49 Identities=29% Similarity=0.739 Sum_probs=43.6
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhc--CCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 144 (504)
..|.|.||++.-++|| ++.|||.|||.||.+|+.. ....||+|+..+..
T Consensus 46 ~~FdCNICLd~akdPV-vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPV-VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccCCCE-EeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 4688999999999999 6999999999999999974 45689999998874
No 10
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.89 E-value=5.5e-10 Score=113.67 Aligned_cols=68 Identities=25% Similarity=0.635 Sum_probs=59.8
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHH
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l 161 (504)
..+..-+.|-||.++|..|+ ++||+|+||..||..+|. ....||.|+..+. ...++.+..+.+||..+
T Consensus 18 k~lD~lLRC~IC~eyf~ip~-itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPM-ITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVT-ESDLRNNRILDEIVKSL 85 (442)
T ss_pred hhhHHHHHHhHHHHHhcCce-eccccchHHHHHHHHHhc-cCCCCCceecccc-hhhhhhhhHHHHHHHHH
Confidence 34556789999999999999 699999999999999998 4589999999997 56799999999998764
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.89 E-value=9.5e-10 Score=79.33 Aligned_cols=39 Identities=49% Similarity=1.171 Sum_probs=34.4
Q ss_pred ccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCC
Q 010664 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138 (504)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (504)
|+||++.+.+|+.+++|||.||..||.+|+.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999667999999999999999996 6899998
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.9e-09 Score=108.14 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=43.6
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCc
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~ 145 (504)
....|.+|++...+|.. +||||.||+.||..|... ...||+||..+.+.
T Consensus 238 a~~kC~LCLe~~~~pSa-TpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSA-TPCGHIFCWSCILEWCSE-KAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCCCc-CcCcchHHHHHHHHHHcc-ccCCCcccccCCCc
Confidence 45789999999999984 999999999999999984 47799999998753
No 13
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.5e-09 Score=103.81 Aligned_cols=86 Identities=34% Similarity=0.713 Sum_probs=68.5
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhh------
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP------ 163 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p------ 163 (504)
...+.+.+.|+||++.|..|+ +++|||+||..|+..++. ....||.||. .. ..+.+|..+.+++..+..
T Consensus 7 ~~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~--~~~~~n~~l~~~~~~~~~~~~~~~ 81 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS--RNLRPNVLLANLVERLRQLRLSRP 81 (386)
T ss_pred hhhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcC-CCcCCcccCC-ch--hccCccHHHHHHHHHHHhcCCccc
Confidence 345567899999999999995 699999999999999988 6689999996 43 267789999999886532
Q ss_pred ------chHhhHHHHhhccHHHH
Q 010664 164 ------DIDKYEEEELAFQDEEA 180 (504)
Q Consensus 164 ------~c~~~eeel~lfCeed~ 180 (504)
.|..|.+.+.+||+.+.
T Consensus 82 ~~~~~~~c~~~~~~~~~~c~~~~ 104 (386)
T KOG2177|consen 82 LGSKEELCEKHGEELKLFCEEDE 104 (386)
T ss_pred ccccchhhhhcCCcceEEecccc
Confidence 36666666667777654
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.72 E-value=4.1e-09 Score=77.80 Aligned_cols=41 Identities=41% Similarity=0.974 Sum_probs=34.5
Q ss_pred cccccccccc--cceeccCCCCcccHHHHHHHhhcCCCCCCCCc
Q 010664 98 QCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (504)
Q Consensus 98 ~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR 139 (504)
.|+||++.+. +.+..++|||.||..||..|++. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999995 45556899999999999999995 57999997
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.4e-09 Score=98.48 Aligned_cols=49 Identities=35% Similarity=0.939 Sum_probs=41.9
Q ss_pred ccccccccccccccc--ceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRK--TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~--Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+..+.|||||+.+.+ |+. +.|||.||..||...++ ....||+|++.+..
T Consensus 129 ~~~~~CPiCl~~~sek~~vs-TkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVS-TKCGHVFCSQCIKDALK-NTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccc-cccchhHHHHHHHHHHH-hCCCCCCcccccch
Confidence 455899999999985 553 89999999999999998 45889999998874
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.72 E-value=8.3e-09 Score=74.70 Aligned_cols=40 Identities=40% Similarity=1.066 Sum_probs=36.7
Q ss_pred ccccccccccceeccCCCCcccHHHHHHHhh-cCCCCCCCC
Q 010664 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPAC 138 (504)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~C 138 (504)
|+||++.+.+|+.+++|||.||..||..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999999996699999999999999998 566789988
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.5e-08 Score=72.81 Aligned_cols=44 Identities=50% Similarity=1.136 Sum_probs=38.8
Q ss_pred cccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccc
Q 010664 98 QCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141 (504)
Q Consensus 98 ~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 141 (504)
.|+||++.+..++.+.+|||.||..|+..|+......||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999999988887667999999999999998656889999875
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.65 E-value=1.8e-08 Score=100.08 Aligned_cols=49 Identities=39% Similarity=0.842 Sum_probs=40.3
Q ss_pred ccccccccccccccc-------eeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
....|+||++.+.++ ..+++|+|.||..||.+|+. ...+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 457899999987653 12478999999999999998 56899999998763
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.64 E-value=2.1e-08 Score=76.08 Aligned_cols=46 Identities=33% Similarity=0.928 Sum_probs=39.9
Q ss_pred cccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+..|.||++...+++ +++|||. ||..|+.+|+. ....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVV-LLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEE-EETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceE-EeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 467999999999988 5999999 99999999998 6689999999875
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.63 E-value=2.4e-08 Score=100.16 Aligned_cols=67 Identities=24% Similarity=0.490 Sum_probs=54.9
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHH
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l 161 (504)
.+..-+.|-||.+.|..|+ +++|||+||..||..+|. ....||+||..+.. ..++.+..+.++++.+
T Consensus 21 ~LDs~lrC~IC~~~i~ip~-~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~es~ 87 (391)
T COG5432 21 GLDSMLRCRICDCRISIPC-ETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINESH 87 (391)
T ss_pred cchhHHHhhhhhheeecce-ecccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHHhh
Confidence 3445688999999999999 599999999999999998 45889999998763 4467777777776653
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.41 E-value=1.5e-07 Score=91.74 Aligned_cols=50 Identities=34% Similarity=0.772 Sum_probs=39.5
Q ss_pred cccccccccccccccc---------ceeccCCCCcccHHHHHHHhhcC-----CCCCCCCccccc
Q 010664 93 IRKEVQCPICLGIIRK---------TRTVMECLHRFCRECIDKAMRLG-----NNECPACRTHCA 143 (504)
Q Consensus 93 l~~~l~CpICl~~~~~---------Pv~v~~CgH~FC~~CI~~~l~~~-----~~~CP~CR~~~~ 143 (504)
..++..|+||++...+ ++ +.+|+|.||..||..|.... ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGI-L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGL-LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccc-cCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3456889999998643 33 46999999999999998742 346999999875
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.38 E-value=2.8e-07 Score=63.83 Aligned_cols=39 Identities=51% Similarity=1.223 Sum_probs=34.7
Q ss_pred ccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCC
Q 010664 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138 (504)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (504)
|+||++....++ +++|||.||..|+..|+......||+|
T Consensus 1 C~iC~~~~~~~~-~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPV-VLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcE-EecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999988887 599999999999999998566789987
No 23
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.35 E-value=1.8e-07 Score=69.43 Aligned_cols=36 Identities=36% Similarity=0.981 Sum_probs=22.1
Q ss_pred cccccccccc----ceeccCCCCcccHHHHHHHhhcC---CCCCC
Q 010664 99 CPICLGIIRK----TRTVMECLHRFCRECIDKAMRLG---NNECP 136 (504)
Q Consensus 99 CpICl~~~~~----Pv~v~~CgH~FC~~CI~~~l~~~---~~~CP 136 (504)
||||.+ |.+ |+ +++|||+||..||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~-~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPM-VLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EE-E-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCE-EEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 88 48999999999999998843 45776
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.9e-07 Score=98.73 Aligned_cols=48 Identities=33% Similarity=0.727 Sum_probs=42.5
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcC----CCCCCCCcccccC
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG----NNECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~----~~~CP~CR~~~~~ 144 (504)
...||||+....-|+. +.|||.||..||..+|... ...||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999995 7899999999999998743 4689999998875
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.9e-07 Score=92.88 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=43.2
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHH-HhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDK-AMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~-~l~~~~~~CP~CR~~~~~ 144 (504)
..++.|+||++....|+. ++|||.||+.||.. |-....-.||+||+.+.+
T Consensus 213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 457889999999999995 99999999999999 766554569999998875
No 26
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.32 E-value=4.2e-07 Score=67.30 Aligned_cols=42 Identities=31% Similarity=0.826 Sum_probs=34.6
Q ss_pred ccccccccc--ccceeccCCCCcccHHHHHHHhhcCCCCCCCCcc
Q 010664 98 QCPICLGII--RKTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 98 ~CpICl~~~--~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
.|+||...+ ..+..+++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999999 3344479999999999999988 35679999985
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.2e-07 Score=101.44 Aligned_cols=63 Identities=22% Similarity=0.649 Sum_probs=53.8
Q ss_pred chhhhhhhccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcc
Q 010664 83 DEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRR 146 (504)
Q Consensus 83 ~e~~~v~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~ 146 (504)
.+........+..-++||+|..-+++.| ++.|||.||..||...+..+...||.|.+.|....
T Consensus 630 d~~L~EElk~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 630 DEVLAEELKEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred cHHHHHHHHHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 3444555667778899999999999999 69999999999999999888899999999998533
No 28
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.18 E-value=1.1e-06 Score=72.29 Aligned_cols=41 Identities=34% Similarity=0.707 Sum_probs=32.8
Q ss_pred cccccccccc------------cceeccCCCCcccHHHHHHHhhcCCCCCCCCc
Q 010664 98 QCPICLGIIR------------KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (504)
Q Consensus 98 ~CpICl~~~~------------~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR 139 (504)
.|+||++.|. -++...+|||.|+..||.+|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 4999999993 34444689999999999999984 46999997
No 29
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.7e-06 Score=88.78 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=38.7
Q ss_pred cccccccccc-cccce---eccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 96 EVQCPICLGI-IRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~-~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+..||+|... +.+|- .+.+|||.||..|+..++..+...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 3579999994 33443 3347999999999999887677899999998874
No 30
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.3e-07 Score=91.95 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=41.9
Q ss_pred ccccccccccc--cceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.+|.||++.|. +-+.++||.|.|+..||..||.+....||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 48999999998 677789999999999999999977677999998765
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.7e-06 Score=87.58 Aligned_cols=48 Identities=38% Similarity=0.762 Sum_probs=42.1
Q ss_pred ccccccccccc--cceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 97 VQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
..|.||+..|. +.+.++||.|.|+..|+.+|+..-...||+||..+.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999999876 5677899999999999999998667899999998763
No 32
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.82 E-value=1.2e-05 Score=85.78 Aligned_cols=72 Identities=24% Similarity=0.592 Sum_probs=58.0
Q ss_pred ccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhch
Q 010664 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 165 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~c 165 (504)
+...+.|++|..++.+|+..+.|||.||..|+..|+.. ...||.|+..+.....+........++.++...|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c 89 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIRC 89 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccccc
Confidence 56789999999999999964599999999999999985 7899999998876565665666666666554443
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.73 E-value=1.7e-05 Score=62.30 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=31.8
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhh-cCCCCCCC
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPA 137 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~ 137 (504)
...+.|||.+..|.+||.-..|||+|.+..|..|+. .+...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346899999999999998779999999999999994 34568998
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.71 E-value=1.8e-05 Score=76.10 Aligned_cols=62 Identities=21% Similarity=0.418 Sum_probs=48.7
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHH
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAA 160 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~ 160 (504)
-.|.|.||...+..|| ++.|||.||..|..+-++. ...|-+|.+... -.+.+.-.|+.|+.+
T Consensus 195 IPF~C~iCKkdy~spv-vt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~--G~f~V~~d~~kmL~~ 256 (259)
T COG5152 195 IPFLCGICKKDYESPV-VTECGHSFCSLCAIRKYQK-GDECGVCGKATY--GRFWVVSDLQKMLNK 256 (259)
T ss_pred Cceeehhchhhccchh-hhhcchhHHHHHHHHHhcc-CCcceecchhhc--cceeHHhhHHHHHhh
Confidence 3589999999999999 6999999999998887774 488999998664 234455556666543
No 35
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.6e-05 Score=80.96 Aligned_cols=47 Identities=21% Similarity=0.660 Sum_probs=39.5
Q ss_pred cccccccccccc-cc------------ceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 95 KEVQCPICLGII-RK------------TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~-~~------------Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.+-.|.||++-+ .. |.. +||||.|+..|+..|+. +..+||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccc-ccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 467899999974 32 355 89999999999999999 6789999999854
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.3e-05 Score=82.22 Aligned_cols=51 Identities=33% Similarity=0.841 Sum_probs=45.1
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+..+|.|.||+.+|..||+ ++|||+||..||.+.+. ....||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 44678999999999999996 89999999999999887 56899999998863
No 37
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.62 E-value=4.8e-05 Score=77.12 Aligned_cols=44 Identities=34% Similarity=0.886 Sum_probs=40.0
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
|.|++|..++++|+.+..|+|.||..||...|-..-+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 89999999999999855899999999999888777799999965
No 38
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.1e-05 Score=78.68 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=42.5
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
-.|+||+....-||. +.|+|.||.-||..........|++||.++..
T Consensus 8 ~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 369999999999985 99999999999999888777889999999975
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.4e-05 Score=85.42 Aligned_cols=47 Identities=28% Similarity=0.648 Sum_probs=40.5
Q ss_pred cccccccccccccc-----ceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIRK-----TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~-----Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
....|+||.+.+.. |. .++|+|.||..|+..|++. ...||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~-rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPK-RLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccc-eeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 35689999999997 55 5999999999999999994 689999998443
No 40
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.49 E-value=8.6e-05 Score=62.81 Aligned_cols=48 Identities=27% Similarity=0.516 Sum_probs=36.4
Q ss_pred cccccccccccc------------cceeccCCCCcccHHHHHHHhhc--CCCCCCCCccccc
Q 010664 96 EVQCPICLGIIR------------KTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~------------~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~ 143 (504)
+-.|.||...|. -|+..-.|+|.|+..||.+|+.. ....||+||+.+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345677666665 25434579999999999999985 3579999999875
No 41
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0001 Score=74.04 Aligned_cols=49 Identities=22% Similarity=0.586 Sum_probs=41.6
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhh-cCCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~~~ 143 (504)
...+||+|.+....|..+.+|+|.||..||...+. ...++||.|...+.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35679999999999998778999999999988654 24579999998775
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=9.8e-05 Score=74.91 Aligned_cols=46 Identities=26% Similarity=0.618 Sum_probs=40.6
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.+.|-||...|..|| ++.|+|+||..|...-++ ....|++|.+...
T Consensus 241 Pf~c~icr~~f~~pV-vt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPV-VTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccch-hhcCCceeehhhhccccc-cCCcceecccccc
Confidence 467999999999999 699999999999888777 4578999998774
No 43
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.32 E-value=0.00012 Score=77.38 Aligned_cols=35 Identities=26% Similarity=0.894 Sum_probs=31.3
Q ss_pred ccccccccccccccccceeccCCCCcccHHHHHHHh
Q 010664 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM 128 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l 128 (504)
+++++.|+||..+|.+|+ +++|+|..|..|....+
T Consensus 1 meeelkc~vc~~f~~epi-il~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPI-ILPCSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCce-EeecccHHHHHHHHhhc
Confidence 357899999999999999 69999999999987655
No 44
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.23 E-value=0.00012 Score=79.06 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=65.6
Q ss_pred ccchhhhcccCCCCCccccCchHHHHhhhcCCCCCcccccccCCcccCCCCCCCCcccccCCCCCCCCCCCCCCCCCcch
Q 010664 5 KRSYENATTNNNNNNHIIITPSEVVEAVLDDDGDDTLQRDHSNNLEEQQPPQDSTPAAAADVDGNESDRSRSSGDGEKDE 84 (504)
Q Consensus 5 kr~~e~~~~nnnnnn~i~~~~se~~e~vleed~d~~~~~dee~eeeEdee~ede~d~d~ed~~~~e~~~s~s~s~~~~~e 84 (504)
++.|-.....+||+.||+.....+.+++-..+----. .... -+
T Consensus 488 fntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S----~~~n----~~----------------------------- 530 (791)
T KOG1002|consen 488 FNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS----ANAN----LP----------------------------- 530 (791)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh----hhcC----CC-----------------------------
Confidence 3455556789999999999888877766544322111 0000 00
Q ss_pred hhhhhhccccccccccccccccccceeccCCCCcccHHHHHHHhhc----CCCCCCCCccccc
Q 010664 85 FVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL----GNNECPACRTHCA 143 (504)
Q Consensus 85 ~~~v~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~----~~~~CP~CR~~~~ 143 (504)
..-.....|.+|.+.-.+++ .+.|.|.||+.||.+|+.. .+-+||+|-..++
T Consensus 531 ------~enk~~~~C~lc~d~aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 ------DENKGEVECGLCHDPAEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ------ccccCceeecccCChhhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 00012356999999999999 5999999999999888752 3469999998775
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00041 Score=53.94 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=39.6
Q ss_pred ccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-.|.||++-..+.| +.-|||. .|..|-.+.++.....||+||+++.
T Consensus 8 dECTICye~pvdsV-lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSV-LYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHH-HHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 46999999999998 6899995 6999988888766789999999874
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.79 E-value=0.00047 Score=73.45 Aligned_cols=48 Identities=27% Similarity=0.662 Sum_probs=38.6
Q ss_pred ccccccccccccccccce---eccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 93 IRKEVQCPICLGIIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+.+--+||||++-+..-+ ..+.|.|+|...|+..|.. ..||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 344568999999998654 3478999999999999965 78999997543
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0023 Score=67.67 Aligned_cols=61 Identities=26% Similarity=0.641 Sum_probs=44.4
Q ss_pred cccccccccccccce----eccCCCCcccHHHHHHHhhc-CCCCCCCCcccccCcccCCCCHHHHHH
Q 010664 96 EVQCPICLGIIRKTR----TVMECLHRFCRECIDKAMRL-GNNECPACRTHCASRRSLRDDLNYDAL 157 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv----~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~~l~~n~~L~~l 157 (504)
..+||||++-+.-|+ ..+.|||.|-..||.+|+.+ ....||.|...-. ++.+++-+.++-+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat-kr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT-KRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH-HHHHHHHHHHHHH
Confidence 368999999887432 23689999999999999963 2358999988765 4555555544433
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00076 Score=72.51 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=39.0
Q ss_pred cccccccccccccc-----cc-----------eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 94 RKEVQCPICLGIIR-----KT-----------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 94 ~~~l~CpICl~~~~-----~P-----------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+....|+||+..+. .+ .+++||.|.|+..|+..|+....-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34557999998654 11 2346999999999999999855568999999875
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0019 Score=67.25 Aligned_cols=45 Identities=36% Similarity=0.779 Sum_probs=37.9
Q ss_pred ccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-.|-||+.-.++-+ ++||-|. .|..|.....- ..+.||+||+++.
T Consensus 291 keCVIClse~rdt~-vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTV-VLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceE-EecchhhehhHhHHHHHHH-hhcCCCccccchH
Confidence 46999999999988 6999996 69999876542 4578999999885
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.31 E-value=0.001 Score=74.83 Aligned_cols=48 Identities=31% Similarity=0.592 Sum_probs=38.4
Q ss_pred cccccccccccccceec--cCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 96 EVQCPICLGIIRKTRTV--MECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v--~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.-.||+|+..+.+-... ..|+|.||..||..|.+ ...+||+||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 45799999988753311 46999999999999988 45899999998753
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0019 Score=67.72 Aligned_cols=50 Identities=32% Similarity=0.764 Sum_probs=39.0
Q ss_pred cccccccccccccccce------ec-cCCCCcccHHHHHHHhhcC------CCCCCCCccccc
Q 010664 94 RKEVQCPICLGIIRKTR------TV-MECLHRFCRECIDKAMRLG------NNECPACRTHCA 143 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv------~v-~~CgH~FC~~CI~~~l~~~------~~~CP~CR~~~~ 143 (504)
..+..|.||++...+.+ .+ .+|.|.||..||..|-... .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34778999999887654 12 4699999999999998422 478999998654
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.26 E-value=0.0016 Score=74.51 Aligned_cols=49 Identities=22% Similarity=0.696 Sum_probs=38.4
Q ss_pred ccccccccccccc------cceeccCCCCcccHHHHHHHhhc-CCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIR------KTRTVMECLHRFCRECIDKAMRL-GNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~------~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~ 143 (504)
-.-.|+||..++. ...++..|.|-|+..|+.+|++. ++..||+||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3457999999886 11223569999999999999985 5679999998765
No 53
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0062 Score=60.59 Aligned_cols=44 Identities=25% Similarity=0.738 Sum_probs=33.1
Q ss_pred cccccccccc-ccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGII-RKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~-~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
..|-.|...- ..|..++.|+|.||..|...... ..||.|++.+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence 3577776644 46777899999999999765422 38999999864
No 54
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.00 E-value=0.0028 Score=66.75 Aligned_cols=48 Identities=23% Similarity=0.597 Sum_probs=39.6
Q ss_pred cccccccccccceeccCCCCcccHHHHHHHhhc-CCCCCCCCcccccCcc
Q 010664 98 QCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPACRTHCASRR 146 (504)
Q Consensus 98 ~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~ 146 (504)
.|.||-+-=++-. +-||||..|..|+..|... ....||.||..+....
T Consensus 371 LCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 6999998877654 6899999999999999854 3689999999886543
No 55
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0031 Score=63.56 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=38.5
Q ss_pred cccccccccccccce---------eccCCCCcccHHHHHHHhhcC-CCCCCCCcccccC
Q 010664 96 EVQCPICLGIIRKTR---------TVMECLHRFCRECIDKAMRLG-NNECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv---------~v~~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~ 144 (504)
+-.|.||..-+...+ -.+.|+|.|+..||..|.-.+ ..+||.|+..+..
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 457999998776333 127899999999999997643 4699999998864
No 56
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.011 Score=62.27 Aligned_cols=46 Identities=22% Similarity=0.565 Sum_probs=33.7
Q ss_pred cccccccccccce---eccCCCCcccHHHHHHHhhcCC--CCCCCCccccc
Q 010664 98 QCPICLGIIRKTR---TVMECLHRFCRECIDKAMRLGN--NECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~--~~CP~CR~~~~ 143 (504)
.|.||.+.+..-. .+-.|||+|+..|+..|+...+ ..||.|+..+.
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 6999976665211 1235999999999999998533 48999995544
No 57
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.59 E-value=0.003 Score=51.54 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=23.0
Q ss_pred cccccccccccc----cceecc---CCCCcccHHHHHHHhhc--CC--------CCCCCCccccc
Q 010664 96 EVQCPICLGIIR----KTRTVM---ECLHRFCRECIDKAMRL--GN--------NECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~----~Pv~v~---~CgH~FC~~CI~~~l~~--~~--------~~CP~CR~~~~ 143 (504)
++.|+||+..+. .|+.+- .|+..|+..|+.+|+.. .. ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 233221 69999999999999863 11 26999999875
No 58
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.38 E-value=0.013 Score=44.63 Aligned_cols=41 Identities=24% Similarity=0.588 Sum_probs=31.8
Q ss_pred ccccccc--ccccceeccCCC-----CcccHHHHHHHhhcC-CCCCCCCc
Q 010664 98 QCPICLG--IIRKTRTVMECL-----HRFCRECIDKAMRLG-NNECPACR 139 (504)
Q Consensus 98 ~CpICl~--~~~~Pv~v~~Cg-----H~FC~~CI~~~l~~~-~~~CP~CR 139 (504)
.|.||++ .-.+|. +.||. |.|+..|+.+|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 333666 58885 789999999999743 46899995
No 59
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.16 E-value=0.014 Score=59.10 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=42.7
Q ss_pred cccccccccccccc---cceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCC
Q 010664 94 RKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDD 151 (504)
Q Consensus 94 ~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n 151 (504)
...|.|||+...|. .-|.+.+|||.|+..||...- ....||+|..+|.....+..+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 35689999999985 344556999999999999873 346799999999854444433
No 60
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.02 Score=58.33 Aligned_cols=64 Identities=27% Similarity=0.535 Sum_probs=49.9
Q ss_pred cccccccccccc------cceeccCCCCcccHHHHHHHhhcCCCCCCCCcccc--cC--cccCCCCHHHHHHHHH
Q 010664 96 EVQCPICLGIIR------KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC--AS--RRSLRDDLNYDALIAA 160 (504)
Q Consensus 96 ~l~CpICl~~~~------~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~--~~--~~~l~~n~~L~~lI~~ 160 (504)
.+.|-||.+.|. .|. ++.|||+||..|+...+......||.||... .. ...+..|+.+..++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~-~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~ 76 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPR-VLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEH 76 (296)
T ss_pred CCceeecCccccccCcccCCc-ccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence 357999999876 466 5889999999999999887778899999973 21 2347778887777654
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.012 Score=61.61 Aligned_cols=45 Identities=24% Similarity=0.573 Sum_probs=35.8
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.....|.||++-..+.+. +||||..| |..-... ...||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~~~~f-vpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVF-VPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceee-ecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 345679999999999885 99999977 7655443 456999998775
No 62
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.91 E-value=0.021 Score=47.87 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.0
Q ss_pred cCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 113 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 113 ~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
=-|.|.|...||.+||.. ...||+|++.+..
T Consensus 52 G~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~ 82 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL 82 (88)
T ss_pred EecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence 359999999999999994 6899999998753
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.017 Score=60.26 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=41.3
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.++-.||||.--...+| +.||+|.-|..||.+.+- +.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Av-f~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAV-FAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhh-ccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 46778999999999999 499999999999999877 5588999988664
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.024 Score=56.65 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=41.5
Q ss_pred cccccccccccccccee---ccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRT---VMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~---v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
..+.||||.+.+.+.+. +.+|||.||..|+.++++ .-..||+|..++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 56899999999986442 358999999999999998 45899999998874
No 65
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.0062 Score=62.04 Aligned_cols=42 Identities=36% Similarity=0.785 Sum_probs=35.1
Q ss_pred cccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
...|.||++...+-+. ++|||. -|..|-.+ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEE-eecCcEEeehhhccc-----cccCchHHHHHH
Confidence 5789999999999995 999995 59888544 358999998764
No 66
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.61 E-value=0.022 Score=58.96 Aligned_cols=63 Identities=22% Similarity=0.524 Sum_probs=48.8
Q ss_pred cccccccccccccccceeccCC--CCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhchH
Q 010664 94 RKEVQCPICLGIIRKTRTVMEC--LHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 166 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~C--gH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~c~ 166 (504)
-+-+.||||.+.+..|+. .| ||.-|..|-.+. ...||.|+.++.. .....+..+++.+...|.
T Consensus 46 ~~lleCPvC~~~l~~Pi~--QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~----~R~~amEkV~e~~~vpC~ 110 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF--QCDNGHLACSSCRTKV----SNKCPTCRLPIGN----IRCRAMEKVAEAVLVPCK 110 (299)
T ss_pred hhhccCchhhccCcccce--ecCCCcEehhhhhhhh----cccCCcccccccc----HHHHHHHHHHHhceeccc
Confidence 356789999999999974 56 899999997653 4789999999874 256667777777665554
No 67
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.40 E-value=0.015 Score=66.15 Aligned_cols=45 Identities=31% Similarity=0.781 Sum_probs=38.0
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCC-CCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGN-NECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~-~~CP~CR~~~~ 143 (504)
+.|.||++ ...++ ++.|+|.||..|+...+.... ..||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 66666 699999999999999987533 36999998765
No 68
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.044 Score=55.99 Aligned_cols=46 Identities=33% Similarity=0.819 Sum_probs=36.6
Q ss_pred cccccccc-cccce---eccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 98 QCPICLGI-IRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~-~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.||+|.-. +.+|- .+-+|+|+.|.+|+...+..+...||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 49999863 33442 234899999999999999988999999988765
No 69
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.014 Score=48.39 Aligned_cols=46 Identities=30% Similarity=0.578 Sum_probs=33.5
Q ss_pred cccccccccc------------cceeccCCCCcccHHHHHHHhhc--CCCCCCCCccccc
Q 010664 98 QCPICLGIIR------------KTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~------------~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~ 143 (504)
+|-||.-.|. -|...=-|.|.|...||.+|+.. ....||+||+.+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 5666666554 14322259999999999999974 3468999998765
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.036 Score=57.42 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=38.9
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-.||||+....+|..+.--|-.||..||..++. ....||+-..+..
T Consensus 301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 469999999999986556699999999999999 5689998776654
No 71
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.53 E-value=0.066 Score=40.82 Aligned_cols=44 Identities=30% Similarity=0.800 Sum_probs=22.2
Q ss_pred ccccccccccc-eecc--CCCCcccHHHHHHHhhcCCCCCCCCcccc
Q 010664 99 CPICLGIIRKT-RTVM--ECLHRFCRECIDKAMRLGNNECPACRTHC 142 (504)
Q Consensus 99 CpICl~~~~~P-v~v~--~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 142 (504)
||+|.+.+... ..+. +||+..|+.|....+......||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877411 1112 58999999999998876678999999864
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.51 E-value=0.035 Score=43.41 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=36.0
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
....|-.|...-...+ +++|||..|..|..-+ +-+.||.|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~-~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGT-VLPCGHLICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccc-cccccceeeccccChh---hccCCCCCCCcccC
Confidence 3456778887767776 5999999999997654 44789999998863
No 73
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.10 E-value=0.054 Score=41.46 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=25.1
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhh----cCCCCCCCCccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----LGNNECPACRTH 141 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~ 141 (504)
.+.|||....+..|+....|.|.-|.+ +..|+. .....||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 378999999999999989999997754 344443 345689999863
No 74
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.09 E-value=0.034 Score=58.73 Aligned_cols=49 Identities=27% Similarity=0.659 Sum_probs=38.8
Q ss_pred cccccccccccccc---cceeccCCCCcccHHHHHHHhhc-CCCCCCCCcccc
Q 010664 94 RKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRL-GNNECPACRTHC 142 (504)
Q Consensus 94 ~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~ 142 (504)
+-.+.|-.|.+.+- +-..-+||.|.|+..|+.+++.+ ....||.||+-.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34688999999764 34445899999999999999864 457999999543
No 75
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.95 E-value=0.026 Score=57.82 Aligned_cols=49 Identities=29% Similarity=0.516 Sum_probs=38.3
Q ss_pred ccccccccccccc--cceeccCCCCcccHHHHHHHhhc----------------------CCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRL----------------------GNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~----------------------~~~~CP~CR~~~~ 143 (504)
....|.||+-=|. +..++++|.|.|+..|+.++|.. ....||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4568999999876 33677999999999999998731 1236999998775
No 76
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.066 Score=59.70 Aligned_cols=42 Identities=24% Similarity=0.695 Sum_probs=33.6
Q ss_pred ccccccccccccccc----cceeccCCCCcccHHHHHHHhhcCCCCCCCCc
Q 010664 93 IRKEVQCPICLGIIR----KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (504)
Q Consensus 93 l~~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR 139 (504)
+..-+.|+||+..|. .||. +-|||+.|..|+..... ..|| |.
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn---~scp-~~ 53 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYN---ASCP-TK 53 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhh---ccCC-CC
Confidence 345678999988776 6986 89999999999987754 6788 44
No 77
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.083 Score=46.35 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=25.3
Q ss_pred CCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 114 ECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 114 ~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.|.|.|+.-||.+|++ ....||+|.+.-.
T Consensus 80 ~CNHaFH~hCisrWlk-tr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-TRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHh-hcCcCCCcCccee
Confidence 5999999999999999 4589999988653
No 78
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.1 Score=55.60 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=35.1
Q ss_pred cccccccccccccc--ceeccCCCCcccHHHHHHHhhc----C---CCCCCCCccc
Q 010664 95 KEVQCPICLGIIRK--TRTVMECLHRFCRECIDKAMRL----G---NNECPACRTH 141 (504)
Q Consensus 95 ~~l~CpICl~~~~~--Pv~v~~CgH~FC~~CI~~~l~~----~---~~~CP~CR~~ 141 (504)
..+.|.||++...- -...+||+|.||..|+..|+.. + .-.||.|...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 45789999998763 3345899999999999998752 2 2368876653
No 79
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.21 Score=49.47 Aligned_cols=47 Identities=21% Similarity=0.608 Sum_probs=37.5
Q ss_pred ccccccccccc--cceeccCCCCcccHHHHHHHhhc-------CCCCCCCCcccccC
Q 010664 97 VQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRL-------GNNECPACRTHCAS 144 (504)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~-------~~~~CP~CR~~~~~ 144 (504)
-.|.+|.-.+. +.+. +.|-|.|++.|+.+|-.+ ....||.|...+-+
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 46999999887 5665 889999999999999753 12589999987653
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.80 E-value=0.14 Score=46.87 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=40.7
Q ss_pred ccccccccccccccceecc---CCCCcccHHHHHHHhhc--CCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVM---ECLHRFCRECIDKAMRL--GNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~---~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 144 (504)
.-++|.||.+...+...+- .||-..|..|....|+- -.+.||+|+..|.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 5578999999988777543 39999999999888873 34799999998864
No 81
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.23 E-value=0.074 Score=60.18 Aligned_cols=67 Identities=28% Similarity=0.737 Sum_probs=50.1
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhc--CCCCCCCCcccccCcccCCCCHHHHHHHH
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCASRRSLRDDLNYDALIA 159 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~~~~l~~n~~L~~lI~ 159 (504)
..+...+.|+||...+..|+. +.|.|.||..|+...+.. ....||+|+..+. ++..+-......++.
T Consensus 16 ~~~~k~lEc~ic~~~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e-K~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE-KRSLRESPRFSQLSK 84 (684)
T ss_pred HHHhhhccCCceeEEeeccch-hhhhHHHHhhhhhceeeccCccccchhhhhhhh-hhhccccchHHHHHH
Confidence 345677899999999999984 999999999999876653 3468999997765 344444444444444
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.99 E-value=0.23 Score=52.05 Aligned_cols=47 Identities=30% Similarity=0.727 Sum_probs=36.1
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhc-CCCCCCCCcccc
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPACRTHC 142 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~ 142 (504)
+...|-||-.-+.--. ++||+|..|..|..+.-.. ..+.||.||...
T Consensus 60 en~~C~ICA~~~TYs~-~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYSA-RYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccceeEEecCCceEEE-eccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3457999999887655 5999999999998664221 457999999853
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.67 E-value=0.14 Score=53.39 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=33.1
Q ss_pred cccccccccc--cce-eccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 98 QCPICLGIIR--KTR-TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~--~Pv-~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.||+|++.+. +-- .--+||-..|..|....-..-+..||.||....
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3999999775 211 113688888999987765544579999998765
No 84
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=0.2 Score=53.23 Aligned_cols=49 Identities=16% Similarity=0.439 Sum_probs=39.7
Q ss_pred ccccccccccccccc---cceeccCCCCcccHHHHHHHhhcCC--CCCCCCcccc
Q 010664 93 IRKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGN--NECPACRTHC 142 (504)
Q Consensus 93 l~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~--~~CP~CR~~~ 142 (504)
....|.|||=.+.-. .|+. +.|||..|..-+.+..+.+. +.||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~-L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMM-LICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCee-eeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 456789999777554 4665 99999999999999988776 8999997643
No 85
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.36 E-value=0.14 Score=51.25 Aligned_cols=48 Identities=29% Similarity=0.835 Sum_probs=36.1
Q ss_pred ccccccccccc-ccce-e--cc-CCCCcccHHHHHHHhhcCCCCCC--CCccccc
Q 010664 96 EVQCPICLGII-RKTR-T--VM-ECLHRFCRECIDKAMRLGNNECP--ACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~-~~Pv-~--v~-~CgH~FC~~CI~~~l~~~~~~CP--~CR~~~~ 143 (504)
+-.||||.... -+|- . +. .|-|..|.+|+.+.+..++..|| -|.+-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 34799998743 2332 1 12 49999999999999998999999 6877553
No 86
>PHA03096 p28-like protein; Provisional
Probab=87.64 E-value=0.31 Score=50.20 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=30.9
Q ss_pred cccccccccccc-ce------eccCCCCcccHHHHHHHhhcC--CCCCCCCcc
Q 010664 97 VQCPICLGIIRK-TR------TVMECLHRFCRECIDKAMRLG--NNECPACRT 140 (504)
Q Consensus 97 l~CpICl~~~~~-Pv------~v~~CgH~FC~~CI~~~l~~~--~~~CP~CR~ 140 (504)
-.|.||++.... ++ .+..|.|.||..|+..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 679999996552 11 134799999999999998642 235655554
No 87
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.60 E-value=0.19 Score=43.01 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=25.9
Q ss_pred cccccccccccccc-cceeccCCCCcccHHHHH
Q 010664 94 RKEVQCPICLGIIR-KTRTVMECLHRFCRECID 125 (504)
Q Consensus 94 ~~~l~CpICl~~~~-~Pv~v~~CgH~FC~~CI~ 125 (504)
...-.|++|...+. .+..+.||||.|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667999999887 455567999999999974
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=0.26 Score=50.90 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=31.7
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.-.|.-|--.+..-=.+++|.|.||..|...- ..+.||.|-..+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHHH
Confidence 34677787655533335899999999997532 3478999976553
No 89
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=0.3 Score=56.32 Aligned_cols=43 Identities=21% Similarity=0.646 Sum_probs=36.6
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccc
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 141 (504)
+.-.|..|...+.-|+.-..|||.|+..|+. .+...||.|+..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchh
Confidence 3468999999999888668999999999987 356899999863
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.12 E-value=0.16 Score=60.63 Aligned_cols=50 Identities=26% Similarity=0.680 Sum_probs=41.0
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccc
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 142 (504)
.+...+.|+||++++.+--.++.|||.||..|+..|+. ....||.|...+
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIK 1198 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhh
Confidence 34455689999999995555789999999999999998 457899998544
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=86.67 E-value=0.73 Score=34.18 Aligned_cols=40 Identities=30% Similarity=0.805 Sum_probs=24.3
Q ss_pred ccccccccccceecc--CCCCcccHHHHHHHhhcCCC-CCCCC
Q 010664 99 CPICLGIIRKTRTVM--ECLHRFCRECIDKAMRLGNN-ECPAC 138 (504)
Q Consensus 99 CpICl~~~~~Pv~v~--~CgH~FC~~CI~~~l~~~~~-~CP~C 138 (504)
|.+|.++...-+... .|+-.++..|+..+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778999888766544 48889999999999985443 69987
No 92
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=0.57 Score=47.16 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=30.8
Q ss_pred ccccccccccccccccceeccCCCCcccHHHHHHHhh
Q 010664 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (504)
+..--.|++|+..+++|| +++=||.||+.||.+++-
T Consensus 40 iK~FdcCsLtLqPc~dPv-it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPV-ITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCc-cCCCCeeeeHHHHHHHHH
Confidence 344456899999999999 699999999999999865
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=83.72 E-value=0.9 Score=42.94 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=22.7
Q ss_pred cccccccccccccceeccCC------------CCcc-cHHHHHHHh
Q 010664 96 EVQCPICLGIIRKTRTVMEC------------LHRF-CRECIDKAM 128 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~C------------gH~F-C~~CI~~~l 128 (504)
+.+|||||+...++|- +-| +..| ...|+.++-
T Consensus 2 d~~CpICme~PHNAVL-LlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVL-LLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEE-EEeccccCCccccccCCccchhHHHHHHH
Confidence 4689999999999994 543 2222 467887764
No 94
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=81.94 E-value=0.84 Score=46.85 Aligned_cols=44 Identities=30% Similarity=0.770 Sum_probs=36.1
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHHHhhcCCCCCCCCcc
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
...||||.+.+. ..+.+++|||.-...|+..+...+ ..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 355999999765 333368999999999999998866 99999988
No 95
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=79.29 E-value=1.4 Score=36.92 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=30.6
Q ss_pred cccCCcccHHHHHHHHHhhhcccccceEEEEEecccccCCCCCCCCCcccCCCcchhhhccccccccccccccCCCCceE
Q 010664 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQNLGHGFLV 462 (504)
Q Consensus 383 l~c~pt~~v~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~g~l~ 462 (504)
+.|.|+-||.+|.+-|+.+++++.+...+|.-.+.. +++.. ....||+.| +..||++|
T Consensus 18 ie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~------------------~~l~s-~~~~tl~~l---glkHGdml 75 (80)
T PF11543_consen 18 IEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNK------------------EELKS-SDSKTLSSL---GLKHGDML 75 (80)
T ss_dssp EEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGG------------------GCSSS--TT-CCCCT------TT-EE
T ss_pred EEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCC------------------ccccc-CCcCCHHHc---CCCCccEE
Confidence 457799999999999999999999977766433221 11110 124566655 77899998
No 96
>PHA02862 5L protein; Provisional
Probab=78.95 E-value=1.7 Score=40.54 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=34.2
Q ss_pred cccccccccccceeccCCCC-----cccHHHHHHHhhc-CCCCCCCCcccccC
Q 010664 98 QCPICLGIIRKTRTVMECLH-----RFCRECIDKAMRL-GNNECPACRTHCAS 144 (504)
Q Consensus 98 ~CpICl~~~~~Pv~v~~CgH-----~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 144 (504)
.|-||.+.-.+.+ .||.- ..+..|+.+|+.. +...||.|+..+.-
T Consensus 4 iCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 6999999865543 56654 3689999999974 45699999987753
No 97
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=77.55 E-value=1.2 Score=41.06 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=26.8
Q ss_pred ccccccccccccc--ceeccCCCC------cccHHHHHHHhh
Q 010664 96 EVQCPICLGIIRK--TRTVMECLH------RFCRECIDKAMR 129 (504)
Q Consensus 96 ~l~CpICl~~~~~--Pv~v~~CgH------~FC~~CI~~~l~ 129 (504)
...|.||++.+.+ -|..+.||- .||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6789999998876 554566765 499999999943
No 98
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=77.44 E-value=1.4 Score=33.71 Aligned_cols=42 Identities=21% Similarity=0.658 Sum_probs=24.4
Q ss_pred cccccccccccceeccCC-CCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 98 QCPICLGIIRKTRTVMEC-LHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~~Pv~v~~C-gH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.|.-|.-..+.- +.| .|..|..|+..++. .+..||+|..++.
T Consensus 4 nCKsCWf~~k~L---i~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFANKGL---IKCSDHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S--SSE---EE-SS-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred cChhhhhcCCCe---eeecchhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 466665555443 446 58889999998887 5689999999876
No 99
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=75.28 E-value=2.4 Score=51.83 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=33.9
Q ss_pred cccccccccc-cc-cceeccCCCCcccHHHHHHHhhcC---------CCCCCCCccccc
Q 010664 96 EVQCPICLGI-IR-KTRTVMECLHRFCRECIDKAMRLG---------NNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~-~~-~Pv~v~~CgH~FC~~CI~~~l~~~---------~~~CP~CR~~~~ 143 (504)
+-.|-||+-. +. .|..-+.|+|.|+..|....+..+ -..||+|..++.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3467788753 22 344348999999999998877631 137999998775
No 100
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=74.00 E-value=3.8 Score=47.67 Aligned_cols=47 Identities=32% Similarity=0.711 Sum_probs=36.1
Q ss_pred cccccccccccccc--cce-eccCCCCcccHHHHHHHhhc------CCCCCCCCcc
Q 010664 94 RKEVQCPICLGIIR--KTR-TVMECLHRFCRECIDKAMRL------GNNECPACRT 140 (504)
Q Consensus 94 ~~~l~CpICl~~~~--~Pv-~v~~CgH~FC~~CI~~~l~~------~~~~CP~CR~ 140 (504)
...+.|.||.+.+. .|+ ....|-|.|...||..|-+. ....||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 35689999999887 343 12358899999999999863 3468999984
No 101
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=73.88 E-value=3.4 Score=39.18 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=34.0
Q ss_pred cccccccccccccceeccCCCC-----cccHHHHHHHhhc-CCCCCCCCcccccC
Q 010664 96 EVQCPICLGIIRKTRTVMECLH-----RFCRECIDKAMRL-GNNECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH-----~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 144 (504)
...|-||.+.-.. . ..||.- ..+..|+.+|+.. +...|+.|++.+.-
T Consensus 8 ~~~CRIC~~~~~~-~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYDV-V-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCCC-c-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4579999987542 2 245544 3489999999985 45789999997753
No 102
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.47 E-value=2.1 Score=49.82 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=31.2
Q ss_pred cccccccccccccccc-cceeccCCCCcccHHHHHHHhh
Q 010664 92 DIRKEVQCPICLGIIR-KTRTVMECLHRFCRECIDKAMR 129 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~-~Pv~v~~CgH~FC~~CI~~~l~ 129 (504)
.++..-.|.+|...+- .|-.+.+|||.|++.|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4455668999998654 7887899999999999988765
No 103
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.03 E-value=3.1 Score=44.26 Aligned_cols=29 Identities=34% Similarity=0.890 Sum_probs=22.3
Q ss_pred CCCcccHHHHHHHhhc------------CCCCCCCCccccc
Q 010664 115 CLHRFCRECIDKAMRL------------GNNECPACRTHCA 143 (504)
Q Consensus 115 CgH~FC~~CI~~~l~~------------~~~~CP~CR~~~~ 143 (504)
|-...|..|+-+|+.. +.-.||+||+.|-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4555799999999852 2348999999875
No 104
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=68.80 E-value=3.7 Score=46.88 Aligned_cols=69 Identities=16% Similarity=0.336 Sum_probs=49.8
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhh----cCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----LGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.-.|.|||+.-.+.-|+.-..|.|.-|..-. .++. .....||+|.+.+. -..+..+..+.+++..+-
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~-~~lq~n~~~pTW~CPVC~~~~~-~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL-SYLQMNEQKPTWRCPVCQKAAP-FEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchh-hhHHhccCCCeeeCccCCcccc-ccchhhhHHHHHHHhhcc
Confidence 345678999999988877777789998776643 2232 23468999999887 366777777777776643
No 105
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.10 E-value=3.1 Score=45.30 Aligned_cols=37 Identities=27% Similarity=0.583 Sum_probs=29.9
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhhc
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL 130 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~ 130 (504)
....+|.||...+......+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 3457899999998853335899999999999999863
No 106
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=4 Score=40.24 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=30.1
Q ss_pred ccccccccccceeccCCCC-cccHHHHHHHhhcCCCCCCCCccccc
Q 010664 99 CPICLGIIRKTRTVMECLH-RFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
|-.|...-.. |.++||.| .+|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES-----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc-----CccCCCCcChhh
Confidence 9999887666 55799999 589999543 357999997654
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=4.2 Score=43.70 Aligned_cols=48 Identities=27% Similarity=0.785 Sum_probs=32.0
Q ss_pred cccccccccccccc---eeccCCCCcccHHHHHHHhhc-----CCCCCCC--Cccccc
Q 010664 96 EVQCPICLGIIRKT---RTVMECLHRFCRECIDKAMRL-----GNNECPA--CRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~P---v~v~~CgH~FC~~CI~~~l~~-----~~~~CP~--CR~~~~ 143 (504)
..+|.||..-...+ ..+..|+|.||..|+.+++.. ....||. |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 56899999433221 113679999999999998862 3457765 554443
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.31 E-value=3.9 Score=42.25 Aligned_cols=29 Identities=31% Similarity=0.934 Sum_probs=22.8
Q ss_pred CCCcccHHHHHHHhhc------------CCCCCCCCccccc
Q 010664 115 CLHRFCRECIDKAMRL------------GNNECPACRTHCA 143 (504)
Q Consensus 115 CgH~FC~~CI~~~l~~------------~~~~CP~CR~~~~ 143 (504)
|....|..|+.+|+.. ++..||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5556899999999842 4568999999875
No 109
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.09 E-value=5.6 Score=40.38 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=39.1
Q ss_pred ccccccccccccccce---eccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCH
Q 010664 95 KEVQCPICLGIIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDL 152 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~ 152 (504)
..|.|||-.-.+..-. .+.+|||.|-..-+.+. ....|++|.+.+.....+..|.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeEeeCC
Confidence 4688998766655322 24689999999888775 4579999999987555444443
No 110
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.41 E-value=6.2 Score=32.78 Aligned_cols=25 Identities=24% Similarity=0.775 Sum_probs=21.4
Q ss_pred CCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 116 LHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 116 gH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-++||..|....+. ..||.|...+.
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhh
Confidence 57899999987766 68999999886
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.61 E-value=3.8 Score=44.03 Aligned_cols=43 Identities=35% Similarity=0.678 Sum_probs=30.6
Q ss_pred cccccccccccccc-----cceeccCCCCcccHHHHHHHhhcCCCCCCCC
Q 010664 94 RKEVQCPICLGIIR-----KTRTVMECLHRFCRECIDKAMRLGNNECPAC 138 (504)
Q Consensus 94 ~~~l~CpICl~~~~-----~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (504)
..-..||.|.-.+. +.++.. |||-||+.|...|.. ....|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh-CCccccCc
Confidence 34567888887765 566656 999999999988876 33445443
No 112
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.52 E-value=5.9 Score=41.43 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=37.8
Q ss_pred cccccccccccccccc---cceeccCCCCcccHHHHHHHhhcC--CCCCCCCccc
Q 010664 92 DIRKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLG--NNECPACRTH 141 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~--~~~CP~CR~~ 141 (504)
.+..-|.||+=.+.-. .|++ +.|||..-..-+....+++ .+.||.|...
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4567789998777654 4664 9999999999888877654 3789999653
No 113
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=61.47 E-value=4.5 Score=40.04 Aligned_cols=45 Identities=20% Similarity=0.561 Sum_probs=37.3
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 142 (504)
..|.+|..+...-+.+-.|+-.+...|+..++.. ...||.|.--+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 4799999998877766678888899999999984 68999996543
No 114
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.60 E-value=6 Score=45.62 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=33.5
Q ss_pred ccccccccccccc-ceeccCCCCcccHHHHHHHhhcCCCCCCC-Cccccc
Q 010664 96 EVQCPICLGIIRK-TRTVMECLHRFCRECIDKAMRLGNNECPA-CRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~-Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~-CR~~~~ 143 (504)
.+.|.||.-..+- ...+..|+|..+..|...|++.+ ..||. |...+.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~C~ 1076 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCHCL 1076 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcCch
Confidence 4567777665552 22246799999999999999955 58987 665553
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.13 E-value=3.5 Score=42.49 Aligned_cols=35 Identities=23% Similarity=0.718 Sum_probs=29.6
Q ss_pred ccccccccccccccceeccCC----CCcccHHHHHHHhhc
Q 010664 95 KEVQCPICLGIIRKTRTVMEC----LHRFCRECIDKAMRL 130 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~C----gH~FC~~CI~~~l~~ 130 (504)
..|.|.+|.+.|.+..+ ..| .|.||..|-.+.++.
T Consensus 267 apLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCce-eecCCCcccceecccCHHHHHh
Confidence 44899999999998875 556 799999999999874
No 116
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=58.43 E-value=8.9 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.769 Sum_probs=15.2
Q ss_pred ccCCCCcccHHHHHHHhhcCCCCCCCCc
Q 010664 112 VMECLHRFCRECIDKAMRLGNNECPACR 139 (504)
Q Consensus 112 v~~CgH~FC~~CI~~~l~~~~~~CP~CR 139 (504)
...|++.||..|= -++......||-|.
T Consensus 24 C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcC-hhhhccccCCcCCC
Confidence 3579999999993 34444567899884
No 117
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=57.98 E-value=9.6 Score=32.07 Aligned_cols=48 Identities=29% Similarity=0.680 Sum_probs=21.7
Q ss_pred cccccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
...|.||.+.+- ++ |.+..|+-..|+.|..--.+.++..||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 347999998654 22 1124688888999987666778899999998764
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=57.45 E-value=8.1 Score=44.78 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=31.2
Q ss_pred cccccccccccccce---ecc---CCCCcccHHHHHHHhhc-----CCCCCCCCcccc
Q 010664 96 EVQCPICLGIIRKTR---TVM---ECLHRFCRECIDKAMRL-----GNNECPACRTHC 142 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv---~v~---~CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~ 142 (504)
..+|++|.--+..|+ .+. .|+|.||..||..|... ....|+.|..-|
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 346777666665422 122 49999999999999863 234678887644
No 119
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=7.6 Score=37.54 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=33.0
Q ss_pred ccccccccccccc-----ce-eccCCCCcccHHHHHHHhhc-----CC-----CCCCCCcccccC
Q 010664 96 EVQCPICLGIIRK-----TR-TVMECLHRFCRECIDKAMRL-----GN-----NECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~~~~-----Pv-~v~~CgH~FC~~CI~~~l~~-----~~-----~~CP~CR~~~~~ 144 (504)
...|-||.-+--+ -+ --+.||..|+.-|+..|++. .+ ..||.|..++..
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3457777654321 11 01469999999999999972 11 379999998763
No 120
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=54.96 E-value=10 Score=29.93 Aligned_cols=44 Identities=20% Similarity=0.625 Sum_probs=29.4
Q ss_pred cccccccccccce-eccCCCC--cccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 98 QCPICLGIIRKTR-TVMECLH--RFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 98 ~CpICl~~~~~Pv-~v~~CgH--~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.|-.|...+.... -..-|.+ +||..|....+. ..||.|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 4666666554211 0123443 799999999875 789999988863
No 121
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=53.87 E-value=8 Score=29.09 Aligned_cols=39 Identities=31% Similarity=0.742 Sum_probs=23.7
Q ss_pred cccccccccc--ceeccCCCC-----cccHHHHHHHhhc-CCCCCCCC
Q 010664 99 CPICLGIIRK--TRTVMECLH-----RFCRECIDKAMRL-GNNECPAC 138 (504)
Q Consensus 99 CpICl~~~~~--Pv~v~~CgH-----~FC~~CI~~~l~~-~~~~CP~C 138 (504)
|-||++.-.+ |. +.||.- ..+..|+.+|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678776442 34 467643 4689999999974 45679887
No 122
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=53.50 E-value=1.7 Score=35.82 Aligned_cols=41 Identities=24% Similarity=0.567 Sum_probs=23.3
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
++.||.|...+.. . . ++.+|..|-..+.. ...||.|..++.
T Consensus 1 e~~CP~C~~~L~~-~---~-~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW-Q---G-GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE-E---T-TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE-e---C-CEEECcccccccee--cccCCCcccHHH
Confidence 3679999998653 2 1 78899999776543 368999998775
No 123
>PLN02189 cellulose synthase
Probab=49.75 E-value=11 Score=45.19 Aligned_cols=47 Identities=32% Similarity=0.682 Sum_probs=34.9
Q ss_pred ccccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
..|.||.+.+- ++ |.+-.|+--.|+.|..-=.+.++..||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 37999999754 22 2234688889999995444567889999999775
No 124
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.56 E-value=14 Score=37.72 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=32.5
Q ss_pred ccccccccccccccce---eccCCC-----CcccHHHHHHHhhcCC-------CCCCCCccccc
Q 010664 95 KEVQCPICLGIIRKTR---TVMECL-----HRFCRECIDKAMRLGN-------NECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv---~v~~Cg-----H~FC~~CI~~~l~~~~-------~~CP~CR~~~~ 143 (504)
.+-.|-||+..=.+-. -+-||. |-.+..|+..|+.+.. -.||.|++...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3457999998654311 123443 4479999999997421 27999998653
No 125
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.09 E-value=10 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=10.5
Q ss_pred cccccccccccce-eccCCCCcc
Q 010664 98 QCPICLGIIRKTR-TVMECLHRF 119 (504)
Q Consensus 98 ~CpICl~~~~~Pv-~v~~CgH~F 119 (504)
.||-|...+.... ....|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 3666666554222 112366655
No 126
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=45.35 E-value=9.9 Score=32.85 Aligned_cols=36 Identities=22% Similarity=0.667 Sum_probs=28.1
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-.|.||...+..+ ||.||..|... ...|.+|.+.+.
T Consensus 45 ~~C~~CK~~v~q~------g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP------GAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC------CCccChhhhcc-----cCcccccCCeec
Confidence 4799998876653 78899999653 368999999874
No 127
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.68 E-value=15 Score=44.31 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=34.7
Q ss_pred ccccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-.|.||.+.+- +| |.+-.|+--.|+.|..==.+.++..||.|++...
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 37999999743 22 2345788889999984334467889999998775
No 128
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.92 E-value=16 Score=38.51 Aligned_cols=40 Identities=25% Similarity=0.657 Sum_probs=20.1
Q ss_pred ccccccccc--cceeccCCCCcccHHHHHHHhhcCCCCCCCCc
Q 010664 99 CPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (504)
Q Consensus 99 CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR 139 (504)
|-.|.+.+. ...++-.|.+.||..|= .++......||-|.
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesLh~CpgCe 374 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESLHNCPGCE 374 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccch-HHHHhhhhcCCCcC
Confidence 666644333 22233456777777762 22332334677664
No 129
>PLN02436 cellulose synthase A
Probab=40.89 E-value=18 Score=43.61 Aligned_cols=46 Identities=35% Similarity=0.787 Sum_probs=34.4
Q ss_pred cccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 98 QCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.|.||.+.+- ++ |.+-.|+--.|+.|..-=.+.++..||.|++...
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6999999753 22 2234688889999995444567889999999775
No 130
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.13 E-value=16 Score=27.93 Aligned_cols=38 Identities=24% Similarity=0.578 Sum_probs=23.1
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhc-CCCCCCCCccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPACRTH 141 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~ 141 (504)
.|.||.|...|.... ++.-|...-... ....||+|...
T Consensus 2 ~f~CP~C~~~~~~~~--------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS--------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHH--------HHHHHHhHCcCCCCCccCCCchhh
Confidence 578999999555332 333444443332 34689999864
No 131
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.16 E-value=18 Score=29.57 Aligned_cols=12 Identities=50% Similarity=1.165 Sum_probs=9.0
Q ss_pred cccHHHHHHHhh
Q 010664 118 RFCRECIDKAMR 129 (504)
Q Consensus 118 ~FC~~CI~~~l~ 129 (504)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 132
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=37.58 E-value=28 Score=38.14 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=8.2
Q ss_pred CccccCchHHHHhhhcCC
Q 010664 19 NHIIITPSEVVEAVLDDD 36 (504)
Q Consensus 19 n~i~~~~se~~e~vleed 36 (504)
|.|.-...|.-|..++++
T Consensus 36 ~~IRkLgeEaEEEA~~EE 53 (458)
T PF10446_consen 36 NAIRKLGEEAEEEAEEEE 53 (458)
T ss_pred HHHhhhhHHHHHHHhhcc
Confidence 344444555444444443
No 133
>PLN02195 cellulose synthase A
Probab=36.85 E-value=24 Score=42.20 Aligned_cols=46 Identities=20% Similarity=0.576 Sum_probs=33.8
Q ss_pred cccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 98 QCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.|.||.+.+- +| |.+-.|+--.|+.|..==-+.++..||.|++...
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6999998543 22 2345799999999984334457889999998774
No 134
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=36.07 E-value=1.3e+02 Score=31.70 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHHHHhhhcccc-CceeEEEEEEecccCCCCCCCCC-----------------ccccCCcccHHHHHHHHHhhh
Q 010664 347 LVDYLQSLEEKD-DQLDMHLVLVSLDEQRIPGLQQP-----------------YLCCRPTLSVRHLCQYVAHQT 402 (504)
Q Consensus 347 ~~~~l~~~~~~~-~e~~~~~~l~~~d~~~~p~l~~p-----------------yl~c~pt~~v~hl~~~va~~~ 402 (504)
|+|+|..-.=.- .---|-++|+|.+....|.+..- =|...--|-|+-++.||+..+
T Consensus 198 l~d~ll~n~~p~ke~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~ 271 (331)
T PF11816_consen 198 LADCLLHNRIPPKEPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKL 271 (331)
T ss_pred HHHHhhcCCCCCCCCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHh
Confidence 567776322111 22468999999996655666555 489999999999999999998
No 135
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.64 E-value=7.5 Score=39.63 Aligned_cols=44 Identities=32% Similarity=0.658 Sum_probs=35.1
Q ss_pred ccccccccccc------cceeccC--------CCCcccHHHHHHHhhcCCCCCCCCccc
Q 010664 97 VQCPICLGIIR------KTRTVME--------CLHRFCRECIDKAMRLGNNECPACRTH 141 (504)
Q Consensus 97 l~CpICl~~~~------~Pv~v~~--------CgH~FC~~CI~~~l~~~~~~CP~CR~~ 141 (504)
-.|.||...+. .|. +.. |||+.|..|+...+......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~-vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPL-VLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchh-HHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46899988776 355 456 999999999999887555899999864
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.61 E-value=26 Score=31.47 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=28.9
Q ss_pred ccccccccccccc-------------eeccCCCCcccHHHHHHHhhcCCCCCCCCc
Q 010664 97 VQCPICLGIIRKT-------------RTVMECLHRFCRECIDKAMRLGNNECPACR 139 (504)
Q Consensus 97 l~CpICl~~~~~P-------------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR 139 (504)
..|--|+..|..+ .....|.+.||..|=.- +......||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f-iHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF-VHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh-hhhhccCCcCCC
Confidence 3588898887654 12467999999999433 333456799885
No 137
>PLN02400 cellulose synthase
Probab=34.14 E-value=20 Score=43.19 Aligned_cols=47 Identities=28% Similarity=0.648 Sum_probs=34.2
Q ss_pred ccccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
..|.||.+.+- +| |.+-.|+--.|+.|..==-+.++..||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 37999999743 22 2235788889999984333457889999998775
No 138
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=33.84 E-value=27 Score=42.10 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=34.8
Q ss_pred ccccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
..|.||.+..- +| |.+-.|+-..|+.|..-=.+.++..||.|+....
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 36999999743 22 2335788889999994444567889999998775
No 139
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.12 E-value=23 Score=40.88 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=36.0
Q ss_pred ccccccccccccccce---------eccCCCCcc--------------------cHHHHHHHhhc-------CCCCCCCC
Q 010664 95 KEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPAC 138 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 138 (504)
+.-+|+-|+..+.+|- .++.||.+| |..|-.+|-.- ....||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 4457999998776542 246788887 99999887541 24589999
Q ss_pred cccccC
Q 010664 139 RTHCAS 144 (504)
Q Consensus 139 R~~~~~ 144 (504)
.-.+..
T Consensus 180 GP~~~l 185 (750)
T COG0068 180 GPHLFL 185 (750)
T ss_pred CCCeEE
Confidence 986643
No 140
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.61 E-value=13 Score=38.67 Aligned_cols=48 Identities=29% Similarity=0.791 Sum_probs=40.3
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+.-.|-||...+.-|...-.|+|.||..|...|... ...||.|+..+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcC
Confidence 456799999999999876679999999999998874 478999988765
No 141
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=31.80 E-value=55 Score=25.80 Aligned_cols=43 Identities=9% Similarity=0.276 Sum_probs=33.3
Q ss_pred EEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 365 LVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 365 ~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
+.+-.++++.+. +...|+.||..|-+.|+.++..++++.-|+.
T Consensus 3 i~v~~~~g~~~~------~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 3 IFVKTLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEEEcCCCCEEE------EEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 334444555432 6778999999999999999999999887774
No 142
>PF14353 CpXC: CpXC protein
Probab=31.63 E-value=31 Score=30.84 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=25.4
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhc--CCCCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~ 143 (504)
++||-|...+.-.+- +.-.-..=..=....+.. ...+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~-~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVW-TSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEE-eEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 679999988874442 111111122223334431 2358999998764
No 143
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.06 E-value=8.7 Score=39.37 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=21.0
Q ss_pred ccccccccccccceeccCC---C--CcccHHHHHHHhhcCCCCCCCCcccc
Q 010664 97 VQCPICLGIIRKTRTVMEC---L--HRFCRECIDKAMRLGNNECPACRTHC 142 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~C---g--H~FC~~CI~~~l~~~~~~CP~CR~~~ 142 (504)
-.||||.....-.+. ..= | +.+|..|-..|-- ....||.|...-
T Consensus 173 g~CPvCGs~P~~s~l-~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVL-RGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEE-E------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred CcCCCCCCcCceEEE-ecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCCC
Confidence 589999998664442 222 3 4579999999865 457899998743
No 144
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=30.62 E-value=1.5e+02 Score=25.17 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=39.3
Q ss_pred EEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccc-eEEEE
Q 010664 364 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYL 413 (504)
Q Consensus 364 ~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e-~e~~~ 413 (504)
.+.|.+ ..++|-|.+.-.-=..+++|.++.+||-.++.+.+++ |=+||
T Consensus 3 ~i~~~~--~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyv 51 (87)
T cd01612 3 TIRFKP--IGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYI 51 (87)
T ss_pred EEEEEE--CCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEE
Confidence 344555 4568999998888899999999999999999998777 66676
No 145
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=30.27 E-value=65 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.1
Q ss_pred cccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 383 l~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
+.+.|+-||..|-+.|+.++.++++++-|+.
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred EEECCCCCHHHhhhhcccccccccccceeee
Confidence 5667999999999999999999999998875
No 146
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=30.06 E-value=71 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=33.9
Q ss_pred EEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEE
Q 010664 365 LVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (504)
Q Consensus 365 ~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~ 412 (504)
+.+..+++++++ +...|+.||..|-+.|+.++..++++.-|+
T Consensus 3 i~v~~~~g~~~~------~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~ 44 (76)
T cd01806 3 IKVKTLTGKEIE------IDIEPTDKVERIKERVEEKEGIPPQQQRLI 44 (76)
T ss_pred EEEEeCCCCEEE------EEECCCCCHHHHHHHHhHhhCCChhhEEEE
Confidence 444556677655 567899999999999999999999987776
No 147
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=29.91 E-value=52 Score=26.02 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=26.8
Q ss_pred cccCCcccHHHHHHHHHhhhcccccceEEE
Q 010664 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (504)
Q Consensus 383 l~c~pt~~v~hl~~~va~~~~~~~~e~e~~ 412 (504)
|-+.|+.||..|-++||.+..+++.+.-|+
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li 42 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVI 42 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEE
Confidence 567799999999999999999999987764
No 148
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=29.85 E-value=27 Score=35.63 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=37.0
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhc-CCCCCCCCcc
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPACRT 140 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~CR~ 140 (504)
-.+.|||-...+.+|+.-..|||.|=+.-|..++.. ....||+-..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 357899998999999976789999999999988863 2457888443
No 149
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=29.61 E-value=18 Score=31.71 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.8
Q ss_pred HHHHHH
Q 010664 122 ECIDKA 127 (504)
Q Consensus 122 ~CI~~~ 127 (504)
.|+.++
T Consensus 54 ~~v~rY 59 (101)
T PF09026_consen 54 TMVKRY 59 (101)
T ss_dssp HHHHHH
T ss_pred chHhhh
Confidence 344444
No 150
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=29.27 E-value=19 Score=28.56 Aligned_cols=33 Identities=18% Similarity=0.497 Sum_probs=16.4
Q ss_pred ccccccccccccc---cceeccCCCCcccHHHHHHH
Q 010664 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKA 127 (504)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~ 127 (504)
+.-.|.+|...|. .....-.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3457999999874 23334579999999997544
No 151
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=28.94 E-value=11 Score=30.82 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=24.2
Q ss_pred EEEEeeecchhhhhhhhhhhcccCcceeeeeeeccc
Q 010664 463 RYIFLIPTSIGRFMHTLQLTTKHGKQHSFLIHSCSL 498 (504)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (504)
|..||+-..|| ++.++|||.|...+=+.|+|+.
T Consensus 2 Rl~~l~~~lvG---~~V~V~~~~G~~yeGif~s~s~ 34 (77)
T PF14438_consen 2 RLVYLLTNLVG---QTVEVTTKNGSVYEGIFHSASP 34 (77)
T ss_dssp --HHHHHTTTT---SEEEEEETTS-EEEEEEEEE-T
T ss_pred hHHHHHHhCcC---CEEEEEECCCCEEEEEEEeCCC
Confidence 45666667777 4678999999999999999986
No 152
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.25 E-value=36 Score=37.43 Aligned_cols=66 Identities=20% Similarity=0.479 Sum_probs=42.5
Q ss_pred hcccccccccccc-ccccccceec-cCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHH
Q 010664 90 LSDIRKEVQCPIC-LGIIRKTRTV-MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDAL 157 (504)
Q Consensus 90 ~~~l~~~l~CpIC-l~~~~~Pv~v-~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~l 157 (504)
.-.+.+.++|++| ...|.+...+ -.|...||-.||...+-. ..|+.|.+.-.....+.+...+...
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~ 280 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDT 280 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHH
Confidence 3455788999999 7777776643 358899999999887652 4566665533222334444444333
No 153
>PF12773 DZR: Double zinc ribbon
Probab=27.99 E-value=40 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.637 Sum_probs=15.6
Q ss_pred cccHHHHHHHh--hcCCCCCCCCccccc
Q 010664 118 RFCRECIDKAM--RLGNNECPACRTHCA 143 (504)
Q Consensus 118 ~FC~~CI~~~l--~~~~~~CP~CR~~~~ 143 (504)
.||..|=.... ......||.|...+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 36666655544 223457888887654
No 154
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.22 E-value=18 Score=37.90 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=30.5
Q ss_pred cccccccccccccceecc----CCC--CcccHHHHHHHhhcCCCCCCCCccc
Q 010664 96 EVQCPICLGIIRKTRTVM----ECL--HRFCRECIDKAMRLGNNECPACRTH 141 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~----~Cg--H~FC~~CI~~~l~~~~~~CP~CR~~ 141 (504)
.-.||||.....-.+ +. .=| +.+|..|-..|-- ....||.|...
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 348999999865433 12 124 3469999999865 35789999863
No 156
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.10 E-value=36 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=22.3
Q ss_pred cccccccccc---cceeccCCCCcccHHHHHHHhh
Q 010664 98 QCPICLGIIR---KTRTVMECLHRFCRECIDKAMR 129 (504)
Q Consensus 98 ~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~ 129 (504)
.|.+|...|. .......||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5888876554 2333468999999999865543
No 157
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=26.94 E-value=44 Score=35.26 Aligned_cols=46 Identities=28% Similarity=0.683 Sum_probs=33.8
Q ss_pred ccccccccccc---cceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
-.||||.+... ....-.+|++..|..|+..... +...||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccc
Confidence 57999999763 1211136899889999888766 6689999997654
No 158
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=26.92 E-value=50 Score=25.99 Aligned_cols=41 Identities=29% Similarity=0.683 Sum_probs=29.1
Q ss_pred ccccccccccc---cceeccCCCCcccHHHHHHHhhcCCCCCCC--Ccccc
Q 010664 97 VQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPA--CRTHC 142 (504)
Q Consensus 97 l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~--CR~~~ 142 (504)
-.|++|.+.|+ +-|....||-.|++.|.... ..|-. |...+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 46999999994 45555679999999996542 45644 55443
No 159
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.93 E-value=33 Score=41.20 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=32.6
Q ss_pred cccccccccccccceeccCCCC-----cccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 96 EVQCPICLGIIRKTRTVMECLH-----RFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH-----~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
...|+-|........ +..||. .||..|-.. . ....||.|......
T Consensus 626 ~RfCpsCG~~t~~fr-CP~CG~~Te~i~fCP~CG~~--~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 626 RRKCPSCGKETFYRR-CPFCGTHTEPVYRCPRCGIE--V-EEDECEKCGREPTP 675 (1121)
T ss_pred CccCCCCCCcCCccc-CCCCCCCCCcceeCccccCc--C-CCCcCCCCCCCCCc
Confidence 468999999865544 467985 599999332 2 34689999998764
No 160
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=25.83 E-value=27 Score=39.62 Aligned_cols=42 Identities=31% Similarity=0.771 Sum_probs=26.2
Q ss_pred ccccccccccc-----c--ccceeccCCCCcccHHHHHHHhhcCCCCCCCCcc
Q 010664 95 KEVQCPICLGI-----I--RKTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 95 ~~l~CpICl~~-----~--~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
..+.|.+|... | ..-..+..|++.|+..|+.. ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchHH
Confidence 34667777431 1 12233457999999999765 4456999943
No 161
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.81 E-value=37 Score=32.67 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.3
Q ss_pred CCCCCCCCcccccC
Q 010664 131 GNNECPACRTHCAS 144 (504)
Q Consensus 131 ~~~~CP~CR~~~~~ 144 (504)
..+.||.|...+..
T Consensus 135 ~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 135 YGFRCPQCGEMLEE 148 (178)
T ss_pred cCCcCCCCCCCCee
Confidence 35999999998863
No 162
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=25.66 E-value=27 Score=35.98 Aligned_cols=53 Identities=19% Similarity=0.442 Sum_probs=33.6
Q ss_pred ccccccccccccccc--------ceeccCCCCcccHHHHH-HHhhc---------CCCCCCCCcccccCcc
Q 010664 94 RKEVQCPICLGIIRK--------TRTVMECLHRFCRECID-KAMRL---------GNNECPACRTHCASRR 146 (504)
Q Consensus 94 ~~~l~CpICl~~~~~--------Pv~v~~CgH~FC~~CI~-~~l~~---------~~~~CP~CR~~~~~~~ 146 (504)
...+.|++|-..+.. -+-.++|.-.||..-+. .||-+ ..+.||.|++.|..+.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS 229 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS 229 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH
Confidence 345778888877651 11124666666766653 46632 4578999999987533
No 163
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=25.58 E-value=30 Score=34.05 Aligned_cols=44 Identities=23% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCcchhhhhhhccccccccccccccccc------cceeccCCCCcccHHHH
Q 010664 80 GEKDEFVIVKLSDIRKEVQCPICLGIIR------KTRTVMECLHRFCRECI 124 (504)
Q Consensus 80 ~~~~e~~~v~~~~l~~~l~CpICl~~~~------~Pv~v~~CgH~FC~~CI 124 (504)
+.+-++....+..|...+.|-||..... +-. +..-.|.|...|+
T Consensus 85 GkPIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekH-F~E~rH~~GlrcL 134 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCEICGNQSYKGRKAFEKH-FQEWRHAYGLRCL 134 (196)
T ss_dssp ---------------------------------------------------
T ss_pred CCcccHHHHHHhCCCCeeeeEeCCCcceecHHHHHHh-cChhHHHccChhc
Confidence 4555667778888999999999999654 222 2567888998887
No 164
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.49 E-value=33 Score=30.57 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=27.4
Q ss_pred cccccccccccc----cceeccCCCCcccHHHHHHHhhcCCCCCCCCcc
Q 010664 96 EVQCPICLGIIR----KTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 96 ~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
.-.|.+|...|. .......|.|.+|..|-...-......|.+|.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 457999987553 344457899999999954311122346777765
No 165
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=24.11 E-value=52 Score=33.32 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhc-CCCCCCC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPA 137 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~ 137 (504)
-+.+|||-+....-|+--..|.|.|=..-|..+++. ....||.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 357899988887778755789999999999998873 2356775
No 166
>PRK00647 hypothetical protein; Validated
Probab=23.98 E-value=1.1e+02 Score=26.69 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=32.6
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEE
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~ 412 (504)
+.|.|.+.=.|.|++ -=++|++|||.++.++...|+|.
T Consensus 27 ~~Lkvrv~ApPvdGK----------------AN~ali~~LAk~l~vpks~I~Iv 64 (96)
T PRK00647 27 GILKVRVTEVPEKGK----------------ANDAVIALLAKFLSLPKRDVTLI 64 (96)
T ss_pred CEEEEEEecCCCCCh----------------HHHHHHHHHHHHhCCChhhEEEE
Confidence 668888888888887 34799999999999999999875
No 167
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=23.58 E-value=43 Score=39.03 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=34.8
Q ss_pred cccccccccccccce---------eccCCCCcc--------------------cHHHHHHHhhc-------CCCCCCCCc
Q 010664 96 EVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPACR 139 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~CR 139 (504)
--.|+-|+..+.+|- .++.||..| |..|..++... ....||.|.
T Consensus 68 ~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~Cg 147 (711)
T TIGR00143 68 VATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRCG 147 (711)
T ss_pred hhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCCC
Confidence 347888888776543 346788776 99999998542 234899998
Q ss_pred cccc
Q 010664 140 THCA 143 (504)
Q Consensus 140 ~~~~ 143 (504)
-.+.
T Consensus 148 p~l~ 151 (711)
T TIGR00143 148 PQLN 151 (711)
T ss_pred cEEE
Confidence 8764
No 168
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=23.48 E-value=65 Score=37.78 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 010664 187 QASIAQTFQRQTE 199 (504)
Q Consensus 187 ~~~l~~~~~rqs~ 199 (504)
-..|++.|+.+..
T Consensus 738 D~~La~~Fk~r~~ 750 (784)
T PF04931_consen 738 DEQLAAIFKERKE 750 (784)
T ss_pred HHHHHHHHHHHHh
Confidence 3344555544433
No 169
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=23.20 E-value=1.1e+02 Score=26.20 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=31.8
Q ss_pred cccCCcccHHHHHHHHHhhhcc-cccceEEEEEeccc
Q 010664 383 LCCRPTLSVRHLCQYVAHQTAL-QASEIEIYLVKELH 418 (504)
Q Consensus 383 l~c~pt~~v~hl~~~va~~~~~-~~~e~e~~~~~~~~ 418 (504)
|-=+|+.|++-||+-+|....+ ++|+-=+|+.++.-
T Consensus 18 L~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~ 54 (87)
T cd01776 18 LLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEET 54 (87)
T ss_pred eecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCc
Confidence 4447999999999999999999 89999999998763
No 170
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.73 E-value=56 Score=24.96 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=6.3
Q ss_pred CCCCCCcccccC
Q 010664 133 NECPACRTHCAS 144 (504)
Q Consensus 133 ~~CP~CR~~~~~ 144 (504)
..||+|..+|..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999988863
No 171
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.71 E-value=80 Score=27.86 Aligned_cols=28 Identities=32% Similarity=0.802 Sum_probs=21.0
Q ss_pred CCcccHHHHHHHhh--------cCCCCCCCCccccc
Q 010664 116 LHRFCRECIDKAMR--------LGNNECPACRTHCA 143 (504)
Q Consensus 116 gH~FC~~CI~~~l~--------~~~~~CP~CR~~~~ 143 (504)
.-.||..||...+. .....||.||..+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 66799999877653 24568999998554
No 172
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=21.94 E-value=1.8e+02 Score=27.63 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHhhhcccccceEEEEEecccccCCCCCCCCCcccCCCcchhhhccccccccccccccCCCCceEEEEEe
Q 010664 388 TLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQNLGHGFLVRYIFL 467 (504)
Q Consensus 388 t~~v~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~g~l~~~~~~ 467 (504)
-|+++.|.+.+.++ +|+|||...++- .+ -|+..-+.+---|=+ -..+|.||.|.-|
T Consensus 12 ~Lt~~ely~LlkLR-------v~VFVVEQ~CPY---------~E----~Dg~Dl~~~~~Hl~~----~~~~g~LvAyaRL 67 (155)
T COG2153 12 DLTVRELYELLKLR-------VDVFVVEQNCPY---------PE----LDGKDLLGDTRHLLG----WTPDGELVAYARL 67 (155)
T ss_pred hcCHHHHHHHHHhh-------eeEEEEecCCCC---------cC----cCCcccccccceEEE----EcCCCeEEEEEec
Confidence 47888899988887 588999988753 11 122221111111111 1128999999998
Q ss_pred eec-------chhhhh
Q 010664 468 IPT-------SIGRFM 476 (504)
Q Consensus 468 ~~~-------~~~~~~ 476 (504)
+|. +|||..
T Consensus 68 l~~~~~~~~~~iGRV~ 83 (155)
T COG2153 68 LPPGAEYEEVSIGRVI 83 (155)
T ss_pred CCCCCCcCceeeeeEE
Confidence 885 688753
No 173
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=12 Score=40.31 Aligned_cols=45 Identities=18% Similarity=0.455 Sum_probs=36.1
Q ss_pred cccccccccccc---eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 98 QCPICLGIIRKT---RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 98 ~CpICl~~~~~P---v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.|.||..-++.- +.-+-|||.+...|+.+|+.. ...||.|+..+.
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~ 245 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELP 245 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhh
Confidence 689999887732 223679999999999999985 578999987665
No 174
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=21.47 E-value=72 Score=37.60 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=34.9
Q ss_pred cccccccc--ccccceeccCCCCc-----ccHHHHHHHhhc-CCCCCCCCcccccC
Q 010664 97 VQCPICLG--IIRKTRTVMECLHR-----FCRECIDKAMRL-GNNECPACRTHCAS 144 (504)
Q Consensus 97 l~CpICl~--~~~~Pv~v~~CgH~-----FC~~CI~~~l~~-~~~~CP~CR~~~~~ 144 (504)
-.|.||.. .-.+|.. -||..+ .+..|+.+|+.- +...|-.|..++.-
T Consensus 13 ~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 13 RSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred hhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 57999876 3447773 677654 589999999983 45689999987643
No 175
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.32 E-value=65 Score=31.66 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=37.9
Q ss_pred cccCCCc---chhhhccccccccccccc-cCCCCceEEEEEeeecchhh-------hhhhhhhhcccCc
Q 010664 430 LMIDPCK---DKLQVLNEQETLTGLQTQ-NLGHGFLVRYIFLIPTSIGR-------FMHTLQLTTKHGK 487 (504)
Q Consensus 430 ~~~~~~~---~~~~~l~~~~~l~~l~~~-~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 487 (504)
.+.|+.. ..+-+|.+++-+ -|+.. .-.-.-.||++...|..||| .+..||++-+||.
T Consensus 101 miaD~~~~vs~~ygvl~~~~g~-a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~~~~hg~ 168 (194)
T COG0450 101 MIADPKGEIARAYGVLHPEEGL-ALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGE 168 (194)
T ss_pred eEEcCchhHHHHcCCcccCCCc-ceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHHHHHhCC
Confidence 3445542 355566655433 23333 44455689999999999997 4678999999974
No 176
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.28 E-value=69 Score=33.80 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=19.8
Q ss_pred ccCCCCcccHHHHHHHhhc---------CCCCCCCCcccccC
Q 010664 112 VMECLHRFCRECIDKAMRL---------GNNECPACRTHCAS 144 (504)
Q Consensus 112 v~~CgH~FC~~CI~~~l~~---------~~~~CP~CR~~~~~ 144 (504)
..||||. |..=-..||.+ ....||.|-..+..
T Consensus 375 F~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 375 FNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3689995 44444444432 12479999887754
No 177
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=20.48 E-value=83 Score=26.20 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=26.5
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEE
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~ 412 (504)
..|.|.+.=.|.|++ -=+.|++|||..+.++...|+|.
T Consensus 26 ~~l~i~v~app~~Gk----------------AN~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 26 GALKIRVTAPPVDGK----------------ANKALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp T-EEEEBSTTCCCCC----------------HHHHHHHHHHHHCT--TTCEEEC
T ss_pred eEEEEEEecCCCcCh----------------hHHHHHHHHHHHhCCCcccEEEE
Confidence 355666666666665 23789999999999999999974
No 178
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.45 E-value=66 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=8.0
Q ss_pred CCCCCCCCccc
Q 010664 131 GNNECPACRTH 141 (504)
Q Consensus 131 ~~~~CP~CR~~ 141 (504)
....||+|...
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34689999763
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.41 E-value=71 Score=32.12 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=20.1
Q ss_pred ccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 119 FCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 119 FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
-|.+|-...-+ +-+.||+|++...+
T Consensus 196 ~C~sC~qqIHR-NAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHR-NAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhc-CCCCCccccccccc
Confidence 59999888766 56899999987654
No 180
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.30 E-value=36 Score=35.68 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=30.9
Q ss_pred ccccccccccccccceecc--CCCC--cccHHHHHHHhhcCCCCCCCCcc
Q 010664 95 KEVQCPICLGIIRKTRTVM--ECLH--RFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~--~CgH--~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
..-.||||.....-.+... .=|+ .+|..|-..|-- ....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 3568999999865433111 2243 469999999865 3578999986
No 181
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=20.02 E-value=22 Score=30.62 Aligned_cols=37 Identities=22% Similarity=0.685 Sum_probs=28.9
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
-.|-||...+.+| |..||..|.... ..|.+|.+.+..
T Consensus 55 ~kC~iCk~~vHQ~------GshYC~tCAY~K-----giCAMCGKki~n 91 (100)
T KOG3476|consen 55 AKCRICKQLVHQP------GSHYCQTCAYKK-----GICAMCGKKILN 91 (100)
T ss_pred chhHHHHHHhcCC------cchhHhHhhhhh-----hHHHHhhhHhhc
Confidence 4799999998877 446999997653 579999887753
Done!