Query 010664
Match_columns 504
No_of_seqs 363 out of 1802
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jm7_B BARD1, BRCA1-associated 99.5 7E-15 2.4E-19 128.6 4.0 91 89-183 15-116 (117)
2 3fl2_A E3 ubiquitin-protein li 99.5 2.3E-14 7.8E-19 126.2 6.0 74 90-164 46-119 (124)
3 1t1h_A Gspef-atpub14, armadill 99.5 3.2E-14 1.1E-18 115.0 4.7 69 92-162 4-72 (78)
4 3ztg_A E3 ubiquitin-protein li 99.5 6E-14 2E-18 116.9 6.0 71 92-163 9-81 (92)
5 2ckl_B Ubiquitin ligase protei 99.4 4E-14 1.4E-18 130.6 4.9 76 90-165 48-123 (165)
6 1z6u_A NP95-like ring finger p 99.4 1.5E-13 5E-18 125.9 5.8 73 91-164 73-145 (150)
7 2ckl_A Polycomb group ring fin 99.4 1.8E-13 6.2E-18 117.6 5.9 77 88-165 7-86 (108)
8 3lrq_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 118.1 3.9 74 87-161 13-86 (100)
9 2kr4_A Ubiquitin conjugation f 99.4 2.7E-13 9.2E-18 112.7 5.1 68 92-162 10-77 (85)
10 1wgm_A Ubiquitin conjugation f 99.4 4.3E-13 1.5E-17 114.6 6.4 68 92-162 18-86 (98)
11 2y43_A E3 ubiquitin-protein li 99.4 3.2E-13 1.1E-17 114.2 5.3 71 90-162 16-86 (99)
12 2kre_A Ubiquitin conjugation f 99.4 5.4E-13 1.8E-17 114.4 5.7 68 92-162 25-92 (100)
13 4ayc_A E3 ubiquitin-protein li 99.3 1.2E-12 4.1E-17 117.6 5.2 66 92-162 49-114 (138)
14 3l11_A E3 ubiquitin-protein li 99.3 5.3E-13 1.8E-17 115.9 2.2 72 92-164 11-88 (115)
15 2egp_A Tripartite motif-contai 99.3 1.8E-13 6.2E-18 110.4 -1.8 65 91-157 7-77 (79)
16 2yu4_A E3 SUMO-protein ligase 99.3 2.3E-12 7.9E-17 108.8 4.8 69 93-163 4-81 (94)
17 2c2l_A CHIP, carboxy terminus 99.3 2.7E-12 9.1E-17 125.8 5.6 69 93-163 205-273 (281)
18 3hct_A TNF receptor-associated 99.3 2.2E-12 7.5E-17 112.8 3.8 74 91-166 13-86 (118)
19 2djb_A Polycomb group ring fin 99.3 3.6E-12 1.2E-16 101.7 4.7 53 91-144 10-62 (72)
20 1jm7_A BRCA1, breast cancer ty 99.2 2.4E-12 8.1E-17 110.5 3.8 73 90-164 15-89 (112)
21 2yur_A Retinoblastoma-binding 99.2 4.2E-12 1.4E-16 102.1 4.8 57 92-149 11-69 (74)
22 2ecw_A Tripartite motif-contai 99.2 7.5E-13 2.6E-17 107.6 0.4 65 91-157 14-83 (85)
23 2ecv_A Tripartite motif-contai 99.2 8.7E-13 3E-17 107.2 0.4 65 91-157 14-83 (85)
24 1rmd_A RAG1; V(D)J recombinati 99.2 3.3E-12 1.1E-16 111.0 4.0 75 92-167 19-93 (116)
25 2csy_A Zinc finger protein 183 99.2 3.3E-12 1.1E-16 104.1 3.7 61 94-158 13-73 (81)
26 2ecy_A TNF receptor-associated 99.2 6.4E-12 2.2E-16 98.5 4.9 52 92-144 11-62 (66)
27 2f42_A STIP1 homology and U-bo 99.2 9.6E-12 3.3E-16 117.3 5.9 70 91-162 101-170 (179)
28 2ysl_A Tripartite motif-contai 99.2 1.7E-11 5.7E-16 97.5 5.2 53 91-144 15-69 (73)
29 3knv_A TNF receptor-associated 99.2 4.8E-12 1.6E-16 114.7 2.2 76 90-166 25-108 (141)
30 2ysj_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 93.2 4.4 47 91-138 15-63 (63)
31 3hcs_A TNF receptor-associated 99.1 2E-11 6.8E-16 112.9 3.1 74 90-165 12-85 (170)
32 3htk_C E3 SUMO-protein ligase 99.1 3.6E-11 1.2E-15 119.2 4.3 69 92-161 177-248 (267)
33 1g25_A CDK-activating kinase a 99.1 4.2E-11 1.4E-15 93.5 3.3 50 95-144 2-55 (65)
34 2d8t_A Dactylidin, ring finger 99.1 3.3E-11 1.1E-15 95.8 2.5 48 95-144 14-61 (71)
35 3ng2_A RNF4, snurf, ring finge 99.1 5.3E-11 1.8E-15 93.9 3.4 49 94-144 8-63 (71)
36 2ecj_A Tripartite motif-contai 99.1 1E-10 3.5E-15 88.6 4.5 46 92-138 11-58 (58)
37 2ct2_A Tripartite motif protei 99.1 8.3E-11 2.9E-15 96.4 4.3 52 92-144 11-68 (88)
38 2ea6_A Ring finger protein 4; 99.1 6.3E-11 2.2E-15 92.7 3.3 49 93-143 12-67 (69)
39 2ect_A Ring finger protein 126 99.0 1.8E-10 6.1E-15 92.9 3.8 50 94-144 13-64 (78)
40 1chc_A Equine herpes virus-1 r 99.0 1.7E-10 5.7E-15 90.5 2.9 49 95-144 4-52 (68)
41 1e4u_A Transcriptional repress 99.0 4.5E-10 1.6E-14 92.0 5.4 52 92-144 7-62 (78)
42 2xeu_A Ring finger protein 4; 99.0 1.9E-10 6.6E-15 88.6 2.9 48 95-144 2-56 (64)
43 1iym_A EL5; ring-H2 finger, ub 98.9 4.1E-10 1.4E-14 84.6 3.7 48 94-143 3-54 (55)
44 2ecm_A Ring finger and CHY zin 98.9 4.8E-10 1.6E-14 84.1 3.7 47 96-143 5-54 (55)
45 2kiz_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 88.0 3.9 49 95-144 13-63 (69)
46 1x4j_A Ring finger protein 38; 98.9 3.9E-10 1.3E-14 90.4 3.0 50 94-144 21-72 (75)
47 2ep4_A Ring finger protein 24; 98.9 5.3E-10 1.8E-14 89.2 3.7 51 93-144 12-64 (74)
48 2ecn_A Ring finger protein 141 98.9 1.8E-10 6.1E-15 91.0 0.9 50 92-144 11-60 (70)
49 2l0b_A E3 ubiquitin-protein li 98.9 6.3E-10 2.1E-14 93.0 3.7 48 94-143 38-88 (91)
50 1v87_A Deltex protein 2; ring- 98.9 1.3E-09 4.4E-14 94.0 5.0 51 95-145 24-95 (114)
51 1bor_A Transcription factor PM 98.8 5.7E-10 2E-14 85.2 1.2 45 95-144 5-49 (56)
52 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.9E-14 94.9 3.7 49 94-144 5-60 (133)
53 4ic3_A E3 ubiquitin-protein li 98.8 9.1E-10 3.1E-14 88.7 0.9 49 90-144 18-67 (74)
54 2ecg_A Baculoviral IAP repeat- 98.7 4.5E-09 1.5E-13 84.7 3.5 49 90-144 19-68 (75)
55 2ecl_A Ring-box protein 2; RNF 98.7 6E-09 2.1E-13 85.3 4.2 47 96-143 15-75 (81)
56 2y1n_A E3 ubiquitin-protein li 98.7 5.6E-09 1.9E-13 109.0 4.4 54 92-146 328-381 (389)
57 3dpl_R Ring-box protein 1; ubi 98.6 2.4E-08 8.3E-13 86.4 4.2 48 95-143 36-100 (106)
58 4ap4_A E3 ubiquitin ligase RNF 98.6 1.5E-08 5.3E-13 88.3 2.1 49 94-144 70-125 (133)
59 2vje_A E3 ubiquitin-protein li 98.5 2.9E-08 1E-12 77.8 3.0 47 95-143 7-56 (64)
60 2bay_A PRE-mRNA splicing facto 98.5 1.9E-08 6.6E-13 78.6 1.3 52 96-150 3-55 (61)
61 2yho_A E3 ubiquitin-protein li 98.5 2.2E-08 7.5E-13 81.9 0.8 49 90-144 12-61 (79)
62 2vje_B MDM4 protein; proto-onc 98.5 5E-08 1.7E-12 76.3 2.8 46 96-143 7-55 (63)
63 1wim_A KIAA0161 protein; ring 98.5 2.4E-08 8.3E-13 83.6 0.8 47 95-141 4-61 (94)
64 3t6p_A Baculoviral IAP repeat- 98.4 8.1E-08 2.8E-12 99.0 1.6 50 89-144 288-338 (345)
65 4a0k_B E3 ubiquitin-protein li 98.3 5.9E-08 2E-12 85.5 0.2 47 96-143 48-111 (117)
66 2ea5_A Cell growth regulator w 98.3 4E-07 1.4E-11 72.3 3.3 44 95-144 14-58 (68)
67 2d8s_A Cellular modulator of i 98.3 4.5E-07 1.5E-11 74.5 3.6 53 96-149 15-75 (80)
68 2ct0_A Non-SMC element 1 homol 98.0 3.9E-06 1.3E-10 68.1 4.4 48 96-143 15-63 (74)
69 3vk6_A E3 ubiquitin-protein li 97.9 9.2E-06 3.1E-10 69.3 4.0 47 98-144 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00026 8.7E-09 54.9 4.0 47 96-143 6-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.1 8.4E-05 2.9E-09 76.3 0.3 48 97-144 309-373 (381)
72 3gs2_A E3 ubiquitin-protein li 96.2 0.0028 9.5E-08 54.4 3.5 28 378-405 21-48 (111)
73 3m62_A Ubiquitin conjugation f 96.1 0.0059 2E-07 70.0 6.5 69 91-162 886-955 (968)
74 3nw0_A Non-structural maintena 96.0 0.0044 1.5E-07 60.6 4.4 48 96-143 180-228 (238)
75 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.012 4E-07 49.1 2.5 74 95-181 2-79 (101)
76 3i2d_A E3 SUMO-protein ligase 92.2 0.12 4E-06 53.6 4.8 65 94-160 247-315 (371)
77 4fo9_A E3 SUMO-protein ligase 92.1 0.088 3E-06 54.3 3.8 67 93-161 212-282 (360)
78 2ko5_A Ring finger protein Z; 91.6 0.088 3E-06 44.4 2.5 48 94-144 26-73 (99)
79 1weo_A Cellulose synthase, cat 79.5 2 6.8E-05 35.8 4.3 47 97-143 17-69 (93)
80 2cs3_A Protein C14ORF4, MY039 75.5 1.5 5.2E-05 35.9 2.5 35 95-130 14-52 (93)
81 1z60_A TFIIH basal transcripti 51.9 9.2 0.00031 29.4 2.7 41 97-138 16-58 (59)
82 1yx5_B Ubiquitin; proteasome, 47.6 43 0.0015 26.9 6.4 32 382-413 14-45 (98)
83 3mjh_B Early endosome antigen 47.6 4.3 0.00015 27.9 0.2 15 96-110 5-19 (34)
84 2xqn_T Testin, TESS; metal-bin 44.0 14 0.00047 31.3 2.9 47 95-144 29-75 (126)
85 1j8c_A Ubiquitin-like protein 43.3 57 0.0019 28.0 6.8 47 358-413 30-76 (125)
86 4dwf_A HLA-B-associated transc 43.2 43 0.0015 26.3 5.7 75 359-469 4-78 (90)
87 1joc_A EEA1, early endosomal a 43.1 9.5 0.00032 33.2 1.8 31 96-126 69-102 (125)
88 3n3k_B Ubiquitin; hydrolase, p 41.5 26 0.0009 27.0 4.0 32 382-413 17-48 (85)
89 2lri_C Autoimmune regulator; Z 41.3 19 0.00065 27.9 3.1 45 97-142 13-60 (66)
90 3mtn_B UBA80, ubcep1, ubiquiti 40.4 29 0.001 26.6 4.2 32 382-413 17-48 (85)
91 3vth_A Hydrogenase maturation 39.8 16 0.00054 41.2 3.4 49 95-143 110-194 (761)
92 4g9i_A Hydrogenase maturation 39.6 11 0.00038 42.4 2.1 49 95-143 105-189 (772)
93 1vfy_A Phosphatidylinositol-3- 38.1 17 0.00057 28.5 2.3 29 97-125 12-43 (73)
94 1dvp_A HRS, hepatocyte growth 37.9 12 0.00039 35.4 1.6 31 96-126 161-194 (220)
95 3a9j_A Ubiquitin; protein comp 37.7 43 0.0015 24.9 4.7 32 382-413 14-45 (76)
96 1wd2_A Ariadne-1 protein homol 35.8 3 0.0001 31.9 -2.3 33 97-129 7-46 (60)
97 3zyq_A Hepatocyte growth facto 35.5 14 0.00048 35.2 1.8 31 96-126 164-197 (226)
98 3ttc_A HYPF, transcriptional r 35.5 14 0.00046 41.1 1.9 48 95-142 16-99 (657)
99 1z2q_A LM5-1; membrane protein 35.2 16 0.00056 29.3 1.9 32 95-126 20-54 (84)
100 1uh6_A Ubiquitin-like 5; beta- 34.8 76 0.0026 26.5 6.0 46 359-412 27-72 (100)
101 2yw8_A RUN and FYVE domain-con 34.4 17 0.00058 29.1 1.8 31 96-126 19-52 (82)
102 3t7l_A Zinc finger FYVE domain 34.4 18 0.00061 29.6 2.0 31 96-126 20-53 (90)
103 3mpx_A FYVE, rhogef and PH dom 33.3 9 0.00031 39.3 0.0 33 96-128 375-410 (434)
104 2zet_C Melanophilin; complex, 33.2 17 0.00057 32.9 1.8 30 95-124 67-100 (153)
105 1y02_A CARP2, FYVE-ring finger 32.6 17 0.0006 31.6 1.7 45 95-140 18-65 (120)
106 4gdk_A Ubiquitin-like protein 32.6 62 0.0021 26.6 5.1 49 363-413 6-55 (91)
107 2lbm_A Transcriptional regulat 32.4 36 0.0012 30.5 3.8 44 96-140 63-116 (142)
108 2pjh_A Protein NPL4, nuclear p 32.0 25 0.00087 27.9 2.5 32 384-415 19-50 (80)
109 1ndd_A NEDD8, protein (ubiquit 31.9 57 0.002 24.2 4.5 32 382-413 14-45 (76)
110 2o35_A Hypothetical protein DU 31.8 16 0.00056 30.9 1.4 12 118-129 42-53 (105)
111 2cup_A Skeletal muscle LIM-pro 31.7 13 0.00044 30.1 0.7 47 95-144 32-78 (101)
112 1wfk_A Zinc finger, FYVE domai 31.6 18 0.00061 29.6 1.5 29 97-125 10-41 (88)
113 3fyb_A Protein of unknown func 31.6 17 0.00057 30.8 1.4 12 118-129 41-52 (104)
114 1m3v_A FLIN4, fusion of the LI 31.5 28 0.00097 29.4 2.9 48 95-144 31-81 (122)
115 2k16_A Transcription initiatio 31.3 20 0.00067 28.0 1.7 49 95-143 17-70 (75)
116 2bwf_A Ubiquitin-like protein 31.0 62 0.0021 24.2 4.6 32 382-413 17-48 (77)
117 1x4u_A Zinc finger, FYVE domai 30.9 20 0.00069 28.8 1.7 30 96-125 14-46 (84)
118 1sif_A Ubiquitin; hydrophobic 30.7 48 0.0016 26.2 4.0 44 364-413 11-54 (88)
119 2ct7_A Ring finger protein 31; 30.6 5.3 0.00018 32.4 -1.8 30 98-127 27-61 (86)
120 3h9d_A ATG8, microtubule-assoc 30.5 96 0.0033 26.8 6.1 51 363-413 32-83 (119)
121 2jne_A Hypothetical protein YF 30.2 3.4 0.00012 35.0 -3.1 40 97-143 33-72 (101)
122 1wil_A KIAA1045 protein; ring 29.8 50 0.0017 27.2 3.9 36 92-127 11-47 (89)
123 2jmo_A Parkin; IBR, E3 ligase, 29.7 6.2 0.00021 31.6 -1.5 33 96-128 25-69 (80)
124 2gmg_A Hypothetical protein PF 29.2 12 0.00041 32.0 0.1 32 105-142 63-94 (105)
125 1wh3_A 59 kDa 2'-5'-oligoadeny 28.9 71 0.0024 24.7 4.7 32 382-413 21-52 (87)
126 2dzi_A Ubiquitin-like protein 28.7 75 0.0026 24.0 4.7 46 360-413 7-52 (81)
127 3k9o_B Ubiquitin, UBB+1; E2-25 28.6 60 0.0021 25.7 4.3 32 382-413 15-46 (96)
128 2d8v_A Zinc finger FYVE domain 28.1 21 0.00072 28.1 1.3 30 97-128 9-39 (67)
129 2l5u_A Chromodomain-helicase-D 27.2 32 0.0011 25.9 2.2 44 96-140 11-57 (61)
130 1zbd_B Rabphilin-3A; G protein 27.0 19 0.00066 31.8 1.0 29 96-124 55-87 (134)
131 1wx8_A Riken cDNA 4931431F19; 26.9 60 0.0021 25.9 4.0 47 358-413 15-61 (96)
132 3rui_B Autophagy-related prote 25.2 95 0.0032 26.7 5.1 77 363-462 31-108 (118)
133 2rgt_A Fusion of LIM/homeobox 25.1 56 0.0019 29.0 3.9 46 95-144 32-77 (169)
134 3phx_B Ubiquitin-like protein 25.1 85 0.0029 23.8 4.4 47 359-413 3-49 (79)
135 3vdz_A Ubiquitin-40S ribosomal 24.2 82 0.0028 26.2 4.5 45 363-413 36-80 (111)
136 3dbh_I NEDD8; cell cycle, acti 24.0 68 0.0023 24.7 3.7 47 359-413 11-57 (88)
137 3u30_A Ubiquitin, linear DI-ub 23.2 1.4E+02 0.0048 26.3 6.1 49 357-413 17-65 (172)
138 1rut_X Flinc4, fusion protein 22.8 35 0.0012 31.1 2.0 48 95-144 31-81 (188)
139 3v6c_B Ubiquitin; structural g 22.7 98 0.0034 24.3 4.5 48 358-413 15-62 (91)
140 4hcn_B Polyubiquitin, ubiquiti 22.5 81 0.0028 25.4 4.0 50 356-413 18-67 (98)
141 4eew_A Large proline-rich prot 22.3 1.1E+02 0.0037 23.7 4.7 48 358-413 15-62 (88)
142 2kdi_A Ubiquitin, vacuolar pro 22.0 96 0.0033 25.9 4.5 47 359-413 8-54 (114)
143 1x61_A Thyroid receptor intera 21.7 77 0.0026 23.6 3.5 35 95-129 32-66 (72)
144 3o36_A Transcription intermedi 21.7 22 0.00075 32.5 0.4 45 97-142 5-52 (184)
145 2jtn_A LIM domain-binding prot 21.6 49 0.0017 29.8 2.7 46 95-144 86-131 (182)
146 1we9_A PHD finger family prote 21.3 12 0.00041 28.3 -1.3 47 95-141 5-58 (64)
147 4fbj_B NEDD8; effector-HOST ta 21.2 1E+02 0.0036 24.2 4.4 32 382-413 14-45 (88)
148 1we7_A SF3A1 protein; structur 20.4 1.2E+02 0.004 25.2 4.7 31 383-413 50-80 (115)
149 2xjy_A Rhombotin-2; oncoprotei 20.4 55 0.0019 27.5 2.7 48 95-144 28-78 (131)
150 2uyz_B Small ubiquitin-related 20.4 1.1E+02 0.0037 23.2 4.2 45 363-413 4-48 (79)
151 2dar_A PDZ and LIM domain prot 20.2 73 0.0025 25.1 3.2 33 96-128 51-83 (90)
152 2hj8_A Interferon-induced 17 k 20.0 1.2E+02 0.0041 23.7 4.5 48 358-413 2-49 (88)
153 2r2q_A Gamma-aminobutyric acid 20.0 1.4E+02 0.0048 25.1 5.1 48 359-408 26-73 (110)
No 1
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=7e-15 Score=128.56 Aligned_cols=91 Identities=23% Similarity=0.530 Sum_probs=60.8
Q ss_pred hhccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhh-----
Q 010664 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP----- 163 (504)
Q Consensus 89 ~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p----- 163 (504)
....+.+.+.|+||+++|.+|+++.+|||+||..||..|+. ..||+||..+. ...+.+|..+.+++..+..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~~~~~~~~ 90 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLCSKLRNLL 90 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999996339999999999999987 78999999986 5779999999999876431
Q ss_pred ------chHhhHHHHhhccHHHHHHH
Q 010664 164 ------DIDKYEEEELAFQDEEAARN 183 (504)
Q Consensus 164 ------~c~~~eeel~lfCeed~~~~ 183 (504)
.|..|.+.+.+||+++..++
T Consensus 91 ~~~~~~~c~~h~~~~~lfc~~~~k~~ 116 (117)
T 1jm7_B 91 HDNELSDLKEDKPRKSLFNDAGNKKG 116 (117)
T ss_dssp HCCCCCC-------------------
T ss_pred hhccccccccccccCccceecccccC
Confidence 37778888899999877554
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=126.24 Aligned_cols=74 Identities=26% Similarity=0.661 Sum_probs=66.1
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhc
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPD 164 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~ 164 (504)
...+.+.+.|+||++.|.+|++ ++|||+||..||..|+......||+||..+.....+.+|..+.+++.+++|.
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred HHhCccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4456678999999999999996 8999999999999999866679999999998657899999999999999876
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=3.2e-14 Score=115.04 Aligned_cols=69 Identities=20% Similarity=0.411 Sum_probs=60.8
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.+.+.|+||+++|.+|+. ++|||+||..||..|+..+...||+|+..+. ...+.+|..++++|+.+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCC-hhhCccCHHHHHHHHHHH
Confidence 35678999999999999996 8999999999999999865789999999987 467888999999988764
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=116.92 Aligned_cols=71 Identities=24% Similarity=0.529 Sum_probs=61.2
Q ss_pred cccccccccccccccccceeccC-CCCcccHHHHHHHhhc-CCCCCCCCcccccCcccCCCCHHHHHHHHHHhh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVME-CLHRFCRECIDKAMRL-GNNECPACRTHCASRRSLRDDLNYDALIAALYP 163 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~-CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p 163 (504)
.+.+.+.|+||+++|.+|++ ++ |||+||..||..|+.. +...||+||..+.....+.+|..+.++++.+..
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 45678999999999999996 78 9999999999999964 347999999998656779999999999987653
No 5
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.44 E-value=4e-14 Score=130.62 Aligned_cols=76 Identities=51% Similarity=1.045 Sum_probs=64.3
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhch
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 165 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~c 165 (504)
...+.+.+.|+||++.|.+|+.+++|||+||..||..|+..+...||+||..+.....+.+|..+.++|..+++..
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 3445677899999999999997559999999999999999657899999999976778999999999999998763
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=125.88 Aligned_cols=73 Identities=21% Similarity=0.621 Sum_probs=64.8
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhc
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPD 164 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~ 164 (504)
..+.+.+.|+||++.|.+|+. ++|||+||..||..|+......||+||..+.....+.+|..+++++..++|.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HhCccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 445677899999999999996 8999999999999999966668999999998655799999999999998875
No 7
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.40 E-value=1.8e-13 Score=117.65 Aligned_cols=77 Identities=27% Similarity=0.753 Sum_probs=65.5
Q ss_pred hhhccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcc---cCCCCHHHHHHHHHHhhc
Q 010664 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRR---SLRDDLNYDALIAALYPD 164 (504)
Q Consensus 88 v~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~---~l~~n~~L~~lI~~l~p~ 164 (504)
+....+.+.+.|+||++.|.+|+++++|||+||..||..|+.. ...||+||..+.... .+.+|..+.+++..+.+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 3445677889999999999999974599999999999999984 489999999987532 578899999999998876
Q ss_pred h
Q 010664 165 I 165 (504)
Q Consensus 165 c 165 (504)
.
T Consensus 86 ~ 86 (108)
T 2ckl_A 86 L 86 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=118.09 Aligned_cols=74 Identities=23% Similarity=0.459 Sum_probs=62.4
Q ss_pred hhhhccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHH
Q 010664 87 IVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (504)
Q Consensus 87 ~v~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l 161 (504)
......+.+.+.|+||++.|.+|+.+++|||.||..||..|+......||+||..+. ...+..+..+.+++..+
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECTTHHHHHHHH
T ss_pred ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC-HHHhHhhHHHHHHHHHH
Confidence 344567788999999999999999669999999999999999865579999999997 46677888887776654
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.38 E-value=2.7e-13 Score=112.68 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=60.2
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.+.|.||||+++|.+||. ++|||+||+.||..|+.. ...||+|+..+. ...+.+|..|.++|..+.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~-~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLLN-SPTDPFNRQMLT-ESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeE-CCCCCEECHHHHHHHHhc-CCCCCCCcCCCC-hHhcchHHHHHHHHHHHH
Confidence 34578999999999999995 899999999999999984 589999999997 467999999999998764
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.38 E-value=4.3e-13 Score=114.57 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=60.3
Q ss_pred cccccccccccccccccceeccCCC-CcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECL-HRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.++|.||||+++|.+||. ++|| |+||+.||..|+.. ...||+|+..+. ...+.+|..|.++|..+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT-MDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC-TTTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC-hhhceEcHHHHHHHHHHH
Confidence 45678999999999999995 9999 99999999999984 579999999998 467999999999988764
No 11
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.2e-13 Score=114.23 Aligned_cols=71 Identities=24% Similarity=0.614 Sum_probs=61.1
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
...+.+.+.|+||++.|.+|+.+++|||+||..||..|+. ....||+||..+.. ..+.+|..+.++++.+.
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSLN 86 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence 3445678899999999999997459999999999999998 45899999999874 67889999999988764
No 12
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.35 E-value=5.4e-13 Score=114.37 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=60.5
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.+.+.||||+++|.+||. ++|||+||+.||..|+. ....||+|+..+.. ..+.+|..|.++|..+.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE-SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence 34578999999999999995 89999999999999998 56899999999984 77999999999998764
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=1.2e-12 Score=117.61 Aligned_cols=66 Identities=33% Similarity=0.657 Sum_probs=53.4
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
.+.+++.|+||++.|.+|++ ++|||+||..||..|+. ....||+||+.+.. ...+..+..++..+.
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS---KTYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC---EEECHHHHHHHHHHH
T ss_pred hccccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC---CCCccchhHHHHHHH
Confidence 34567899999999999995 89999999999999998 45889999998864 234566666666554
No 14
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=5.3e-13 Score=115.88 Aligned_cols=72 Identities=29% Similarity=0.634 Sum_probs=61.5
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC------cccCCCCHHHHHHHHHHhhc
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS------RRSLRDDLNYDALIAALYPD 164 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~------~~~l~~n~~L~~lI~~l~p~ 164 (504)
.+.+++.|+||++.|.+|++ ++|||+||..||..|+..+...||+||..+.. ...+..|..+.+++.+++|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 34567899999999999996 89999999999999998667899999998863 35577889999999888765
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-13 Score=110.42 Aligned_cols=65 Identities=26% Similarity=0.753 Sum_probs=53.4
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcC------CCCCCCCcccccCcccCCCCHHHHHH
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG------NNECPACRTHCASRRSLRDDLNYDAL 157 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~------~~~CP~CR~~~~~~~~l~~n~~L~~l 157 (504)
..+.+.+.|+||++.|.+|+. ++|||+||..||..|+... ...||+||..+.. ..+.+|..++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHh
Confidence 345678899999999999995 8999999999999999852 5799999999874 557777665443
No 16
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=108.79 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=58.5
Q ss_pred ccccccccccccccccceecc-CCCCcccHHHHHHHhhcC-----CCCCCC--Cccc-ccCcccCCCCHHHHHHHHHHhh
Q 010664 93 IRKEVQCPICLGIIRKTRTVM-ECLHRFCRECIDKAMRLG-----NNECPA--CRTH-CASRRSLRDDLNYDALIAALYP 163 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~-~CgH~FC~~CI~~~l~~~-----~~~CP~--CR~~-~~~~~~l~~n~~L~~lI~~l~p 163 (504)
....|.||||+++|.+||+ + .|||+||+.||..||... ...||+ |+.. +. ...|.+|..|..+|..+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHHHH
Confidence 3567999999999999996 7 499999999999999743 469999 9877 55 5779999999999987653
No 17
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=2.7e-12 Score=125.85 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=60.6
Q ss_pred ccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhh
Q 010664 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 163 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p 163 (504)
+...+.||||+++|.+||+ ++|||+||+.||..|+..+...||+|+.++. ...+.+|..+.++|..+..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-GGGCEECHHHHHHHHHHHT
T ss_pred CCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCc-hhcCcccHHHHHHHHHHHH
Confidence 4567999999999999995 9999999999999999865556999999997 4679999999999987653
No 18
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.2e-12 Score=112.79 Aligned_cols=74 Identities=28% Similarity=0.528 Sum_probs=63.6
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhchH
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 166 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~c~ 166 (504)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||+||..+.. ..+.++..+..+|..+...|.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~C~ 86 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKCP 86 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEECS
T ss_pred cCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHccceeECC
Confidence 456778999999999999996 89999999999999998655699999999974 567788888888888776664
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=101.75 Aligned_cols=53 Identities=34% Similarity=0.856 Sum_probs=46.7
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
..+.+.+.|+||++.+.+|+++++|||+||..||..|+.. ...||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 4456788999999999999975699999999999999984 5899999999874
No 20
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.4e-12 Score=110.55 Aligned_cols=73 Identities=29% Similarity=0.739 Sum_probs=59.4
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcC--CCCCCCCcccccCcccCCCCHHHHHHHHHHhhc
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG--NNECPACRTHCASRRSLRDDLNYDALIAALYPD 164 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~ 164 (504)
...+.+.+.|+||++.+.+|+. ++|||+||..||..|+... ...||+||..+.. ..+.++..+.++++.+...
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHHH
T ss_pred HHhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHHH
Confidence 3456678899999999999995 8999999999999999843 3589999999874 6677777777777765443
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=4.2e-12 Score=102.14 Aligned_cols=57 Identities=30% Similarity=0.693 Sum_probs=47.0
Q ss_pred cccccccccccccccccceeccC-CCCcccHHHHHHHhhcC-CCCCCCCcccccCcccCC
Q 010664 92 DIRKEVQCPICLGIIRKTRTVME-CLHRFCRECIDKAMRLG-NNECPACRTHCASRRSLR 149 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~-CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~~l~ 149 (504)
.+.+.+.|+||++.|.+|+. ++ |||+||..||..|+... ...||+||+.+.....+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALS 69 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTT
T ss_pred cCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccc
Confidence 45678899999999999996 88 99999999999999843 369999999865433333
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=7.5e-13 Score=107.56 Aligned_cols=65 Identities=32% Similarity=0.809 Sum_probs=53.0
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcC-----CCCCCCCcccccCcccCCCCHHHHHH
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG-----NNECPACRTHCASRRSLRDDLNYDAL 157 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~-----~~~CP~CR~~~~~~~~l~~n~~L~~l 157 (504)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+... ...||+||..+.. ..+.+|..++++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHh
Confidence 345677899999999999995 8999999999999999852 6799999999873 556666655443
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.7e-13 Score=107.18 Aligned_cols=65 Identities=28% Similarity=0.840 Sum_probs=53.5
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhc-----CCCCCCCCcccccCcccCCCCHHHHHH
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-----GNNECPACRTHCASRRSLRDDLNYDAL 157 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~~~~~~l~~n~~L~~l 157 (504)
..+.+.+.|+||++.+.+|+. ++|||.||..||..|+.. +...||+||..+.. ..+.+|..++++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHh
Confidence 345677899999999999995 899999999999999874 36799999999874 567777665443
No 24
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.23 E-value=3.3e-12 Score=110.98 Aligned_cols=75 Identities=24% Similarity=0.551 Sum_probs=63.0
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhchHh
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDK 167 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~c~~ 167 (504)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||+||..+........+..+.+++..+...|..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~ 93 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPA 93 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCS
T ss_pred hccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCC
Confidence 34567899999999999996 8999999999999999865679999999998655556788888888887766653
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.3e-12 Score=104.12 Aligned_cols=61 Identities=20% Similarity=0.441 Sum_probs=50.1
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHH
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALI 158 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI 158 (504)
...+.|+||++.|.+|+. ++|||+||..||..|+.. ...||+||..+. ..+.++..+.+.+
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~l~~~~ 73 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-TPRCYICDQPTG--GIFNPAKELMAKL 73 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC--SCCEECHHHHHHH
T ss_pred CCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-CCcCCCcCcccc--ccCCcHHHHHHHH
Confidence 356789999999999995 999999999999999984 579999999985 4566665544333
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.4e-12 Score=98.49 Aligned_cols=52 Identities=23% Similarity=0.681 Sum_probs=46.1
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+.+.+.|+||++.+.+|+. ++|||.||..||..|+......||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45667899999999999996 89999999999999996566799999998864
No 27
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.21 E-value=9.6e-12 Score=117.29 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=61.2
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
..+...|.||||+++|.+||. ++|||+||+.||..|+..+...||+|+.++. ...+.+|..|.++|..+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~-~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLT-QDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCC-hhhCcchHHHHHHHHHHH
Confidence 355688999999999999995 8999999999999999864347999999997 467999999999998764
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=97.48 Aligned_cols=53 Identities=40% Similarity=0.919 Sum_probs=45.9
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhc--CCCCCCCCcccccC
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCAS 144 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 144 (504)
..+.+.+.|+||++.+.+|+. ++|||.||..||..|+.. ....||+||+.+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345677899999999999996 799999999999999973 45699999998863
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=4.8e-12 Score=114.72 Aligned_cols=76 Identities=20% Similarity=0.415 Sum_probs=61.8
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC--------cccCCCCHHHHHHHHHH
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS--------RRSLRDDLNYDALIAAL 161 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~--------~~~l~~n~~L~~lI~~l 161 (504)
...+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||+||..+.. ...+.++..+..+|..+
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 3567889999999999999996 89999999999999998666699999997532 22345777788888777
Q ss_pred hhchH
Q 010664 162 YPDID 166 (504)
Q Consensus 162 ~p~c~ 166 (504)
...|.
T Consensus 104 ~v~Cp 108 (141)
T 3knv_A 104 PAVCP 108 (141)
T ss_dssp EEECC
T ss_pred ccccC
Confidence 76664
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.7e-11 Score=93.17 Aligned_cols=47 Identities=43% Similarity=1.004 Sum_probs=41.2
Q ss_pred ccccccccccccccccccceeccCCCCcccHHHHHHHhhc--CCCCCCCC
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPAC 138 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~C 138 (504)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678899999999999996 799999999999999974 45689998
No 31
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=112.89 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=63.0
Q ss_pred hccccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHhhch
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 165 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~p~c 165 (504)
...+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||+||..+.. ..+.++..+..+|..+...|
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~v~C 85 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKC 85 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEEC
T ss_pred ccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHhhcccCC
Confidence 3467788999999999999996 89999999999999998655699999999974 55667888888888876665
No 32
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3.6e-11 Score=119.18 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=59.6
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhc-CCCCCCC--CcccccCcccCCCCHHHHHHHHHH
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPA--CRTHCASRRSLRDDLNYDALIAAL 161 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~--CR~~~~~~~~l~~n~~L~~lI~~l 161 (504)
.....+.||||+++|.+||+.+.|||+||+.||..|+.. +...||+ |++.+. ...+.+|..|..+++.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHH
Confidence 345789999999999999975699999999999999985 3468999 999887 57799999999988664
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=4.2e-11 Score=93.51 Aligned_cols=50 Identities=30% Similarity=0.693 Sum_probs=42.9
Q ss_pred cccccccccc-ccccce---eccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLG-IIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~-~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+++.|+||++ .+.+|+ .+++|||+||..||..|+..+...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999999 899884 2489999999999999987666789999999874
No 34
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=3.3e-11 Score=95.83 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=42.8
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+.+.|+||++.+.+|+. ++|||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 46789999999999995 899999999999999984 4899999998863
No 35
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.07 E-value=5.3e-11 Score=93.92 Aligned_cols=49 Identities=33% Similarity=0.833 Sum_probs=43.2
Q ss_pred cccccccccccccccc-------eeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+.+.|+||++.+.+| + +++|||.||..||..|+.. ...||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEE-ECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeE-eCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4567899999999988 5 5999999999999999984 4799999999874
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=88.64 Aligned_cols=46 Identities=30% Similarity=0.876 Sum_probs=40.2
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhc--CCCCCCCC
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPAC 138 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~C 138 (504)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999999995 899999999999999764 56799998
No 37
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.3e-11 Score=96.42 Aligned_cols=52 Identities=27% Similarity=0.798 Sum_probs=45.0
Q ss_pred ccccccccccccccccc----ceeccCCCCcccHHHHHHHhhcC--CCCCCCCcccccC
Q 010664 92 DIRKEVQCPICLGIIRK----TRTVMECLHRFCRECIDKAMRLG--NNECPACRTHCAS 144 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~----Pv~v~~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~ 144 (504)
.+.+.+.|+||++.|.+ |+. ++|||+||..||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45667899999999998 885 8999999999999999853 4799999998764
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.3e-11 Score=92.67 Aligned_cols=49 Identities=33% Similarity=0.817 Sum_probs=43.0
Q ss_pred ccccccccccccccccc-------eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 93 IRKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 93 l~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+.+.+.|+||++.+.+| + +++|||.||..||..|+.. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 34667899999999987 6 5999999999999999985 579999999875
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.99 E-value=1.8e-10 Score=92.86 Aligned_cols=50 Identities=24% Similarity=0.611 Sum_probs=42.1
Q ss_pred cccccccccccccccce--eccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKTR--TVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv--~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
...+.|+||++.|..+. .+++|+|.||..||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 45678999999998553 34799999999999999984 4899999999874
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.98 E-value=1.7e-10 Score=90.53 Aligned_cols=49 Identities=37% Similarity=0.826 Sum_probs=42.5
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
....|+||++.+.+|+.+++|||.||..|+..|+.. ...||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 346799999999998556999999999999999984 4899999998763
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=4.5e-10 Score=92.01 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=43.0
Q ss_pred cccccccccccccccc--cceeccC--CCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 92 DIRKEVQCPICLGIIR--KTRTVME--CLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~--~Pv~v~~--CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+++++.||||++.+. +++ +++ |||.||..|+..++......||.||+.+..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3567789999999885 344 455 999999999999987667899999999874
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=1.9e-10 Score=88.55 Aligned_cols=48 Identities=33% Similarity=0.843 Sum_probs=42.2
Q ss_pred ccccccccccccccc-------eeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+.+.|+||++.+.+| + +++|||.||..||..|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEE-EETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEE-eCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 357899999999987 5 5899999999999999985 5799999999874
No 43
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.94 E-value=4.1e-10 Score=84.62 Aligned_cols=48 Identities=31% Similarity=0.772 Sum_probs=40.5
Q ss_pred ccccccccccccccc---ceeccC-CCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 94 RKEVQCPICLGIIRK---TRTVME-CLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 94 ~~~l~CpICl~~~~~---Pv~v~~-CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.+...|+||++.+.. ++. ++ |||.||..||..|+.. ...||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 456789999999986 664 65 9999999999999984 689999998764
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=4.8e-10 Score=84.14 Aligned_cols=47 Identities=32% Similarity=0.769 Sum_probs=39.9
Q ss_pred ccccccccccccc---ceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
...|+||++.+.+ ++.+++|||.||..||..|+... ..||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 4679999999865 34469999999999999999855 89999998764
No 45
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=5.3e-10 Score=87.97 Aligned_cols=49 Identities=33% Similarity=0.828 Sum_probs=40.1
Q ss_pred ccccccccccccc--cceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
....|+||++.|. .++.+++|||.||..||..|+.. ...||+||+.+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3457999999885 33445899999999999999985 4689999998863
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=3.9e-10 Score=90.42 Aligned_cols=50 Identities=28% Similarity=0.746 Sum_probs=42.1
Q ss_pred cccccccccccccccc--eeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKT--RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~P--v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+...|+||++.|..+ +.+++|+|.||..||..|+.. ...||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 3557899999999876 335899999999999999984 4799999998864
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.3e-10 Score=89.19 Aligned_cols=51 Identities=24% Similarity=0.625 Sum_probs=42.2
Q ss_pred cccccccccccccccccee--ccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 93 IRKEVQCPICLGIIRKTRT--VMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~--v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+.....|+||++.|..+.. +++|+|.||..||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3456789999999986543 3499999999999999985 4699999998864
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.8e-10 Score=90.98 Aligned_cols=50 Identities=32% Similarity=0.811 Sum_probs=43.8
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+.+.+.|+||++.+.+ + +++|||.||..||..|+. ....||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 34567889999999999 6 599999999999999998 56899999998874
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.90 E-value=6.3e-10 Score=92.99 Aligned_cols=48 Identities=29% Similarity=0.722 Sum_probs=41.1
Q ss_pred ccccccccccccccc---ceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 94 RKEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 94 ~~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.....|+||++.|.. ++ +++|||.||..||..|+. ....||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 356789999999875 55 489999999999999998 4579999999875
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.87 E-value=1.3e-09 Score=93.99 Aligned_cols=51 Identities=25% Similarity=0.598 Sum_probs=41.3
Q ss_pred ccccccccccccccce-----------------eccCCCCcccHHHHHHHhh----cCCCCCCCCcccccCc
Q 010664 95 KEVQCPICLGIIRKTR-----------------TVMECLHRFCRECIDKAMR----LGNNECPACRTHCASR 145 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv-----------------~v~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~ 145 (504)
.+..|+||++.|..|+ .+++|+|.||..||..|+. .....||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3458999999997653 1589999999999999995 2457999999988643
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=5.7e-10 Score=85.17 Aligned_cols=45 Identities=22% Similarity=0.738 Sum_probs=39.2
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+.+.|+||++.|.+|+. ++|||+||..||.. ....||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEE-cCCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 56789999999999994 99999999999876 24689999998763
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.83 E-value=1.4e-09 Score=94.92 Aligned_cols=49 Identities=33% Similarity=0.856 Sum_probs=43.4
Q ss_pred cccccccccccccccc-------eeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+.+.|+||++.|.+| + +++|||+||..||.+|+. ....||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3568899999999998 6 599999999999999998 45799999998874
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=9.1e-10 Score=88.72 Aligned_cols=49 Identities=27% Similarity=0.635 Sum_probs=42.7
Q ss_pred hccccccccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
...+.+.+.|+||++.+.+|+. ++|||. ||..|+..| ..||+||+.+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3455677899999999999995 899999 999999877 789999998864
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.5e-09 Score=84.67 Aligned_cols=49 Identities=27% Similarity=0.619 Sum_probs=41.4
Q ss_pred hccccccccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
...+.+.+.|+||++.+.+|+. ++|||. ||..|+.. ...||+||..+..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3445677899999999999994 999999 99999964 3789999998864
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6e-09 Score=85.32 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=38.7
Q ss_pred ccccccccccccc--------------ceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRK--------------TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~--------------Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
...|+||++.|.+ ++.+.+|+|.||..||.+|+.. ...||+||+.+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 4569999998866 4443469999999999999984 479999999875
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=5.6e-09 Score=108.95 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=46.2
Q ss_pred cccccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccCcc
Q 010664 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRR 146 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~ 146 (504)
.......|+||++.+.+|+. ++|||.||..|+..|+......||+||..+....
T Consensus 328 ~~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred hcCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 34455799999999999995 9999999999999999855689999999887533
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.59 E-value=2.4e-08 Score=86.37 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=40.8
Q ss_pred ccccccccccccccc-----------------eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIRKT-----------------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~P-----------------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+...|+||++.|..+ +.+++|+|.||..||..|+.. ...||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 456799999998865 445799999999999999984 689999999865
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.56 E-value=1.5e-08 Score=88.34 Aligned_cols=49 Identities=33% Similarity=0.833 Sum_probs=42.8
Q ss_pred cccccccccccccccc-------eeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.+.+.|+||++.|.++ + +++|||.||..||.+|+.. ...||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 3567899999999987 6 5899999999999999984 5799999999874
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.54 E-value=2.9e-08 Score=77.84 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=41.1
Q ss_pred ccccccccccccccceecc--CCCCc-ccHHHHHHHhhcCCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIRKTRTVM--ECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~--~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
+...|+||++.+.+++. + +|||. ||..|+..|+. ....||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 45679999999999984 6 99999 89999999987 4578999999885
No 60
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.52 E-value=1.9e-08 Score=78.57 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=43.5
Q ss_pred cccccccccccccceecc-CCCCcccHHHHHHHhhcCCCCCCCCcccccCcccCCC
Q 010664 96 EVQCPICLGIIRKTRTVM-ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRD 150 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~-~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~ 150 (504)
.+.||||++++.+||. + +|||+||+.||.+|+... ..||+++.++.. ..+.+
T Consensus 3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~-~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSI-EEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCG-GGCEE
T ss_pred eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCCh-hhcEE
Confidence 4789999999999995 6 999999999999999843 569999999874 44443
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.48 E-value=2.2e-08 Score=81.90 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=41.8
Q ss_pred hccccccccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 90 LSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
...+.+...|+||++.+.+++. ++|||. ||..|+..| ..||+||..+..
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred HHcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 3455677899999999999995 999999 999999865 489999998864
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.48 E-value=5e-08 Score=76.28 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=40.1
Q ss_pred cccccccccccccceecc--CCCCc-ccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVM--ECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~--~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
...|+||++.+.+++. + +|||. ||..|+..|+.. ...||+||+.+.
T Consensus 7 ~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 4579999999999874 6 99998 999999999874 478999999885
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=2.4e-08 Score=83.56 Aligned_cols=47 Identities=28% Similarity=0.744 Sum_probs=38.8
Q ss_pred ccccccccccccccceec--cCCCCcccHHHHHHHhhc----C---CCCCCC--Cccc
Q 010664 95 KEVQCPICLGIIRKTRTV--MECLHRFCRECIDKAMRL----G---NNECPA--CRTH 141 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v--~~CgH~FC~~CI~~~l~~----~---~~~CP~--CR~~ 141 (504)
+.++|+||++.+..|+++ .+|||.||..|+..++.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457899999999988753 379999999999999863 2 358999 9987
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.36 E-value=8.1e-08 Score=99.03 Aligned_cols=50 Identities=26% Similarity=0.665 Sum_probs=43.5
Q ss_pred hhccccccccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 89 ~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
....+.+.+.|+||++.+.+|+. ++|||. ||..|+..| ..||+||..+..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34566778999999999999995 899999 999999876 689999998863
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.34 E-value=5.9e-08 Score=85.51 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=0.4
Q ss_pred cccccccccccccc-----------------eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKT-----------------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~P-----------------v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
.-.|+||++.|.++ +..++|+|.||..||..|+.. ...||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 45899999999763 333589999999999999984 689999999865
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4e-07 Score=72.34 Aligned_cols=44 Identities=23% Similarity=0.681 Sum_probs=38.2
Q ss_pred ccccccccccccccceeccCCCCc-ccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+...|+||++.+.+++ ++||||. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWV-LLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCE-ETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEE-EECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3567999999999999 4999999 99999984 3789999998864
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.5e-07 Score=74.51 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=42.1
Q ss_pred cccccccccccc--cceeccCCC-----CcccHHHHHHHhhcC-CCCCCCCcccccCcccCC
Q 010664 96 EVQCPICLGIIR--KTRTVMECL-----HRFCRECIDKAMRLG-NNECPACRTHCASRRSLR 149 (504)
Q Consensus 96 ~l~CpICl~~~~--~Pv~v~~Cg-----H~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~~l~ 149 (504)
...|.||++.+. +++ +++|. |.|+..||.+|+... ...||+||..+.....+.
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 457999998874 677 58996 999999999999853 368999999887544333
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=3.9e-06 Score=68.11 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=40.3
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcC-CCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG-NNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~ 143 (504)
...|.||.+++..-.....|+|.|+..||.+||+.. ...||+|+..+.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 357999999998655556899999999999999843 379999999875
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=9.2e-06 Score=69.33 Aligned_cols=47 Identities=26% Similarity=0.597 Sum_probs=42.0
Q ss_pred cccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 98 QCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 98 ~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.|++|.-.+..-..++||.|.||..|+..|.+.+.+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 69999998887666799999999999999988778999999998864
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.21 E-value=0.00026 Score=54.90 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=38.5
Q ss_pred cccccccccccccceeccCCC--C---cccHHHHHHHhhc-CCCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECL--H---RFCRECIDKAMRL-GNNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~Cg--H---~FC~~CI~~~l~~-~~~~CP~CR~~~~ 143 (504)
...|.||+....++. +.||. + .|+..|+.+|+.. +...||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 347999998877776 58865 4 7999999999974 4679999999875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.10 E-value=8.4e-05 Score=76.34 Aligned_cols=48 Identities=17% Similarity=0.551 Sum_probs=36.8
Q ss_pred cccccccccccc----cee---ccCCCCcccHHHHHHHhhcCC----------CCCCCCcccccC
Q 010664 97 VQCPICLGIIRK----TRT---VMECLHRFCRECIDKAMRLGN----------NECPACRTHCAS 144 (504)
Q Consensus 97 l~CpICl~~~~~----Pv~---v~~CgH~FC~~CI~~~l~~~~----------~~CP~CR~~~~~ 144 (504)
..|+||+..+.+ |.. -..|+|.|+..|+.+|++... ..||.|+++++.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 359999998875 311 137999999999999997311 379999998863
No 72
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=96.23 E-value=0.0028 Score=54.43 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=26.8
Q ss_pred CCCCccccCCcccHHHHHHHHHhhhccc
Q 010664 378 LQQPYLCCRPTLSVRHLCQYVAHQTALQ 405 (504)
Q Consensus 378 l~~pyl~c~pt~~v~hl~~~va~~~~~~ 405 (504)
.|-.|+...++.||.|||+|||.++.|+
T Consensus 21 ~~~RYIKTt~nATVDHLsKYLA~Rl~Le 48 (111)
T 3gs2_A 21 AQTRYIKTSGNATVDHLSKYLAVRLALE 48 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHHHH
T ss_pred hceEEEEcCCCccHHHHHHHHHHHHhHH
Confidence 6889999999999999999999999987
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.11 E-value=0.0059 Score=70.03 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=59.6
Q ss_pred ccccccccccccccccccceeccCCC-CcccHHHHHHHhhcCCCCCCCCcccccCcccCCCCHHHHHHHHHHh
Q 010664 91 SDIRKEVQCPICLGIIRKTRTVMECL-HRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (504)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l~ 162 (504)
..+.+++.|||-++++.+||. ++.| ++|-+.+|.+|+.. ..+||.=|.++. ...+.+|+.|+..|..+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~-~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK-LEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC-cccccccHHHHHHHHHHH
Confidence 345678999999999999995 8997 69999999999985 579999999997 467899999999987753
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.03 E-value=0.0044 Score=60.57 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=40.5
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhhcC-CCCCCCCccccc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG-NNECPACRTHCA 143 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~ 143 (504)
-..|.||.+++..-+.+..|+|.|+..|+..|++.. ...||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 457999999998766666799999999999999753 469999999865
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.85 E-value=0.012 Score=49.14 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=44.3
Q ss_pred ccccccccccc-cccceec-cCCCCcccHHHHHHHhhcCCCCCCCCccccc-CcccCCCCHHHHHHHHHHhhchHhhH-H
Q 010664 95 KEVQCPICLGI-IRKTRTV-MECLHRFCRECIDKAMRLGNNECPACRTHCA-SRRSLRDDLNYDALIAALYPDIDKYE-E 170 (504)
Q Consensus 95 ~~l~CpICl~~-~~~Pv~v-~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~-~~~~l~~n~~L~~lI~~l~p~c~~~e-e 170 (504)
+++.|+||.+. +..|+.. +.|+|.||..|+..+....... . +..+. ....... -...|..|. +
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~--~h~l~~~~~~~~~----------~~~~C~~H~~e 68 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-T--GHRLIEPIPDSHI----------RGLMCLEHEDE 68 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-T--TCCBSSCCCSCCS----------SCCCCSSCSSS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-C--CCeeeccccccCc----------cCCcCcCcCCC
Confidence 35789999975 6777732 8999999999999844311110 0 11111 0000000 123589994 7
Q ss_pred HHhhccHHHHH
Q 010664 171 EELAFQDEEAA 181 (504)
Q Consensus 171 el~lfCeed~~ 181 (504)
.+.+||++++.
T Consensus 69 ~l~~fC~~~~~ 79 (101)
T 2jun_A 69 KVNMYCVTDDQ 79 (101)
T ss_dssp CCCEEETTTTE
T ss_pred cceEECCCCCC
Confidence 79999987654
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.12 Score=53.61 Aligned_cols=65 Identities=20% Similarity=0.394 Sum_probs=50.4
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhh----cCCCCCCCCcccccCcccCCCCHHHHHHHHH
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----LGNNECPACRTHCASRRSLRDDLNYDALIAA 160 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~ 160 (504)
.-.|.|||-...+..|+....|.|.-|..- ..|+. .....||+|.+.+. ...|..|..+..++..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~-~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA-LENLAISEFVDDILQN 315 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC-GGGEEEBHHHHHHHTT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccC-HHHeeEcHHHHHHHHh
Confidence 456899999999999999899999966553 23332 35679999999887 4678888888777654
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.11 E-value=0.088 Score=54.34 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=52.6
Q ss_pred ccccccccccccccccceeccCCCCcccHHHHHHHhh----cCCCCCCCCcccccCcccCCCCHHHHHHHHHH
Q 010664 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----LGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (504)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~lI~~l 161 (504)
+.-.|.|||-...+..|+....|.|.-|..- ..|+. .....||+|.+.+. ...|..|..+.+++...
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~-~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAA-YESLILDGLFMEILNDC 282 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCC-GGGEEEBHHHHHHHTTC
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccC-HHHeEEcHHHHHHHHhC
Confidence 3456899999999999999899999966542 33332 35679999999887 47789999998888753
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.58 E-value=0.088 Score=44.38 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=38.7
Q ss_pred cccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
---+.|..|.-..+.-| ....|.+|..|+.-++. .+..||+|+.++..
T Consensus 26 ~G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred cCcccChhhccccCCee--eecchhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 34578999998888654 34579999999999888 56899999998864
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.48 E-value=2 Score=35.83 Aligned_cols=47 Identities=32% Similarity=0.663 Sum_probs=35.9
Q ss_pred ccccccccccc-----cc-eeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
..|.||.+.+- ++ |..-.|+-..|+.|+.--.+.++..||.|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 57999999743 11 1124688889999997767778899999999875
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.55 E-value=1.5 Score=35.91 Aligned_cols=35 Identities=26% Similarity=0.727 Sum_probs=28.5
Q ss_pred ccccccccccccccceeccCC----CCcccHHHHHHHhhc
Q 010664 95 KEVQCPICLGIIRKTRTVMEC----LHRFCRECIDKAMRL 130 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~C----gH~FC~~CI~~~l~~ 130 (504)
..+.|.+|.+-+.+... ..| .|.||..|-..+++.
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 46789999999987663 445 799999999998873
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.86 E-value=9.2 Score=29.36 Aligned_cols=41 Identities=24% Similarity=0.609 Sum_probs=29.6
Q ss_pred ccccccccccccc--eeccCCCCcccHHHHHHHhhcCCCCCCCC
Q 010664 97 VQCPICLGIIRKT--RTVMECLHRFCRECIDKAMRLGNNECPAC 138 (504)
Q Consensus 97 l~CpICl~~~~~P--v~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (504)
..|--|+..|.+. .....|++.||..|= -++......||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 3588898888543 234679999999993 3444456789988
No 82
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=47.62 E-value=43 Score=26.94 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.7
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 47788999999999999999999999888765
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.59 E-value=4.3 Score=27.88 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=11.3
Q ss_pred cccccccccccccce
Q 010664 96 EVQCPICLGIIRKTR 110 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv 110 (504)
.|.||||+..|..+-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 478888888877654
No 84
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.01 E-value=14 Score=31.30 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=36.1
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+-|.|..|...|........=|..||..|..+.+. ..|..|..++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCc
Confidence 46899999998875332355688899999877643 789999998874
No 85
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.26 E-value=57 Score=27.98 Aligned_cols=47 Identities=6% Similarity=0.132 Sum_probs=35.7
Q ss_pred cCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
...|.|.++.+ ++.+ .|.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 30 ~~~m~I~Vk~~---g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 30 PKIIKVTVKTP---KEKE------EFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp CCCEEEEEECS---SCEE------EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred CCcEEEEEEeC---CeEE------EEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 34566665543 3322 47788999999999999999999999887764
No 86
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=43.19 E-value=43 Score=26.32 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=50.6
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEEEecccccCCCCCCCCCcccCCCcch
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDK 438 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (504)
.+|.|+++. ++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+. ++
T Consensus 4 ~~m~i~Vk~--~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~G---------------------- 52 (90)
T 4dwf_A 4 DSLEVLVKT--LDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QG---------------------- 52 (90)
T ss_dssp CEEEEEEEE--TTCCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TT----------------------
T ss_pred cEEEEEEEc--CCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CC----------------------
Confidence 455555544 445432 47888999999999999999999999886654 11
Q ss_pred hhhccccccccccccccCCCCceEEEEEeee
Q 010664 439 LQVLNEQETLTGLQTQNLGHGFLVRYIFLIP 469 (504)
Q Consensus 439 ~~~l~~~~~l~~l~~~~~~~g~l~~~~~~~~ 469 (504)
..|+++.||+.+.. .|+.|-.+.-.|
T Consensus 53 -k~L~d~~tL~~~~i----~g~~i~l~~~~~ 78 (90)
T 4dwf_A 53 -RVLQDDKKLQEYNV----GGKVIHLVERAP 78 (90)
T ss_dssp -EECCTTSBGGGGTC----TTEEEEEEECCC
T ss_pred -eECCCCCCHHHcCC----CCcEEEEEecCC
Confidence 34566778887653 377665544433
No 87
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.12 E-value=9.5 Score=33.23 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=22.8
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHH
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (504)
...|.+|...|. .....-.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 347999998775 2233468999999999643
No 88
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=41.49 E-value=26 Score=26.99 Aligned_cols=32 Identities=6% Similarity=0.227 Sum_probs=28.5
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.|.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 36788999999999999999999999987665
No 89
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=41.32 E-value=19 Score=27.91 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=32.1
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhc---CCCCCCCCcccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL---GNNECPACRTHC 142 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~---~~~~CP~CR~~~ 142 (504)
-.|.||.+-= +-+..-.|...|+..|+...+.. +...||.|....
T Consensus 13 ~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4599998642 33334568999999999876653 446899998654
No 90
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=40.39 E-value=29 Score=26.63 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.5
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 46788999999999999999999999887764
No 91
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=39.84 E-value=16 Score=41.19 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=35.5
Q ss_pred ccccccccccccccce---------eccCCCCcc--------------------cHHHHHHHhhc-------CCCCCCCC
Q 010664 95 KEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPAC 138 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 138 (504)
+.-+|+-|+..+.+|- .++.||.+| |..|..+|-.- ....||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 3458999998776543 346788665 99999998642 34589999
Q ss_pred ccccc
Q 010664 139 RTHCA 143 (504)
Q Consensus 139 R~~~~ 143 (504)
.-.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 88664
No 92
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=39.60 E-value=11 Score=42.45 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=36.1
Q ss_pred ccccccccccccccce---------eccCCCCcc--------------------cHHHHHHHhhc-------CCCCCCCC
Q 010664 95 KEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPAC 138 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 138 (504)
+.-+|+-|+..+.+|- .++.||.+| |..|-.+|-.- ....||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 4458999998776542 346788876 99999998642 34589999
Q ss_pred ccccc
Q 010664 139 RTHCA 143 (504)
Q Consensus 139 R~~~~ 143 (504)
.-.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 98664
No 93
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.12 E-value=17 Score=28.51 Aligned_cols=29 Identities=24% Similarity=0.498 Sum_probs=21.6
Q ss_pred ccccccccccc---cceeccCCCCcccHHHHH
Q 010664 97 VQCPICLGIIR---KTRTVMECLHRFCRECID 125 (504)
Q Consensus 97 l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~ 125 (504)
-.|.+|...|. .....-.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999998775 223346799999999953
No 94
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.92 E-value=12 Score=35.43 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=22.8
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHH
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (504)
...|.+|...|. .....-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 457999998775 2333568999999998543
No 95
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=37.73 E-value=43 Score=24.90 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.8
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 47788999999999999999999999887765
No 96
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.75 E-value=3 Score=31.92 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=22.9
Q ss_pred ccccccccccc-----cceeccC--CCCcccHHHHHHHhh
Q 010664 97 VQCPICLGIIR-----KTRTVME--CLHRFCRECIDKAMR 129 (504)
Q Consensus 97 l~CpICl~~~~-----~Pv~v~~--CgH~FC~~CI~~~l~ 129 (504)
-.||-|.-.+. +-++... |++.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888888776 3343333 888888888877654
No 97
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.46 E-value=14 Score=35.17 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=22.5
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHH
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (504)
.-.|.+|...|. .-.....||..||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 347999998765 2233578999999999643
No 98
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=35.46 E-value=14 Score=41.06 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=35.4
Q ss_pred ccccccccccccccce---------eccCCCCcc--------------------cHHHHHHHhhc-------CCCCCCCC
Q 010664 95 KEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPAC 138 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 138 (504)
+.-+|+-|+..+.+|- .++.||.+| |..|..+|-.- ....||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 4457999998776543 346788776 99999998642 34689999
Q ss_pred cccc
Q 010664 139 RTHC 142 (504)
Q Consensus 139 R~~~ 142 (504)
.-.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 8776
No 99
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.20 E-value=16 Score=29.33 Aligned_cols=32 Identities=16% Similarity=0.456 Sum_probs=23.3
Q ss_pred ccccccccccccc---cceeccCCCCcccHHHHHH
Q 010664 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (504)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (504)
+...|.+|...|. .....-.||..||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3457999998775 2233468999999999654
No 100
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.81 E-value=76 Score=26.53 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=35.4
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEE
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~ 412 (504)
..|.|.++ .+.++++. |.|.|+-||..|-+-||.+..++++++=|+
T Consensus 27 ~mm~I~VK--tl~Gk~i~------lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi 72 (100)
T 1uh6_A 27 TMIEVVCN--DRLGKKVR------VKCNTDDTIGDLKKLIAAQTGTRWNKIVLK 72 (100)
T ss_dssp CEEEEEEE--CSSSSCEE------EEEETTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CeEEEEEE--CCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 34555544 54455444 899999999999999999999999887654
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.41 E-value=17 Score=29.14 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=22.8
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHH
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (504)
...|.+|...|. .....-.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 346999998775 2233468999999999654
No 102
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.36 E-value=18 Score=29.60 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=22.5
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHH
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (504)
...|.+|...|. .......||+.||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 356999998765 2233468999999999643
No 103
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.26 E-value=9 Score=39.28 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=0.0
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHHHHh
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKAM 128 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l 128 (504)
...|.+|...|. ....+..||+.||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 457999998775 222346899999999986554
No 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.24 E-value=17 Score=32.93 Aligned_cols=30 Identities=33% Similarity=0.782 Sum_probs=22.6
Q ss_pred ccccccccccccc----cceeccCCCCcccHHHH
Q 010664 95 KEVQCPICLGIIR----KTRTVMECLHRFCRECI 124 (504)
Q Consensus 95 ~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI 124 (504)
.+-.|.+|...|. ..+....|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3568999999874 33445689999999885
No 105
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.60 E-value=17 Score=31.55 Aligned_cols=45 Identities=24% Similarity=0.643 Sum_probs=28.0
Q ss_pred ccccccccccccc---cceeccCCCCcccHHHHHHHhhcCCCCCCCCcc
Q 010664 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (504)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 140 (504)
....|..|...|. .-.....||..||..|....+. ....|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 3457999988775 2233578999999999755433 2355666654
No 106
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=32.57 E-value=62 Score=26.59 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=38.9
Q ss_pred EEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccc-eEEEE
Q 010664 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYL 413 (504)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e-~e~~~ 413 (504)
|.+.|.+ ...+|.|.+-=.--..+++|.++..||-.++.+.+++ |=+||
T Consensus 6 v~v~fk~--~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV 55 (91)
T 4gdk_A 6 IDILLKA--VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV 55 (91)
T ss_dssp EEEEEEE--CSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred EEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 3444444 5578999998888899999999999999999997765 55554
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.44 E-value=36 Score=30.46 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=29.6
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhh----------cCCCCCCCCcc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----------LGNNECPACRT 140 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----------~~~~~CP~CR~ 140 (504)
+..|.+|.+-=.- +..-.|-..||..||..-+. .+...||.|..
T Consensus 63 ~d~C~vC~~GG~L-lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNL-ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSE-EECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcE-EeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3468888763321 11246888999999986542 35678999974
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=32.03 E-value=25 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=26.2
Q ss_pred ccCCcccHHHHHHHHHhhhcccccceEEEEEe
Q 010664 384 CCRPTLSVRHLCQYVAHQTALQASEIEIYLVK 415 (504)
Q Consensus 384 ~c~pt~~v~hl~~~va~~~~~~~~e~e~~~~~ 415 (504)
.+-|+-+|..|.+.|+.++...+....||+-.
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~ 50 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYINR 50 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEecC
Confidence 45689999999999999999887776666644
No 109
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=31.88 E-value=57 Score=24.18 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=28.6
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 47788999999999999999999999888764
No 110
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.81 E-value=16 Score=30.92 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=11.0
Q ss_pred cccHHHHHHHhh
Q 010664 118 RFCRECIDKAMR 129 (504)
Q Consensus 118 ~FC~~CI~~~l~ 129 (504)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 111
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.71 E-value=13 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.464 Sum_probs=34.3
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.-|.|..|...|........=+..||..|..+. ....|..|...+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 568999999988654222445788999997543 34789999998863
No 112
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.60 E-value=18 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=21.4
Q ss_pred ccccccccccc---cceeccCCCCcccHHHHH
Q 010664 97 VQCPICLGIIR---KTRTVMECLHRFCRECID 125 (504)
Q Consensus 97 l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~ 125 (504)
..|.+|...|. .-.....||..||..|..
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 46999998775 223346899999999854
No 113
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.59 E-value=17 Score=30.83 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=11.0
Q ss_pred cccHHHHHHHhh
Q 010664 118 RFCRECIDKAMR 129 (504)
Q Consensus 118 ~FC~~CI~~~l~ 129 (504)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 114
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.50 E-value=28 Score=29.39 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=36.1
Q ss_pred cccccccccccccc---ceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+-|.|..|...|.+ .. ...=+..||..|..+.+. ....|..|...+..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 45899999999862 33 345678899999988765 22379999998874
No 115
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=31.28 E-value=20 Score=27.99 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=33.2
Q ss_pred cccccccccccccc--ceeccCCCCcccHHHHHHHhhc---CCCCCCCCccccc
Q 010664 95 KEVQCPICLGIIRK--TRTVMECLHRFCRECIDKAMRL---GNNECPACRTHCA 143 (504)
Q Consensus 95 ~~l~CpICl~~~~~--Pv~v~~CgH~FC~~CI~~~l~~---~~~~CP~CR~~~~ 143 (504)
+...|+||...... -+..-.|..-|+..|+...... ....||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34579999886543 2333468888999998644331 3568999987664
No 116
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=30.96 E-value=62 Score=24.21 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=28.7
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 47888999999999999999999999888764
No 117
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.93 E-value=20 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=21.9
Q ss_pred cccccccccccc---cceeccCCCCcccHHHHH
Q 010664 96 EVQCPICLGIIR---KTRTVMECLHRFCRECID 125 (504)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~ 125 (504)
...|.+|...|. .......||..||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 457999998775 223346799999999954
No 118
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=30.73 E-value=48 Score=26.21 Aligned_cols=44 Identities=9% Similarity=0.251 Sum_probs=35.4
Q ss_pred EEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 364 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 364 ~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
++.+..++++++ .+.+.|+.||..|.+-|+.++.++++..-|+.
T Consensus 11 ~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 11 QLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 445556666643 47888999999999999999999999887765
No 119
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.63 E-value=5.3 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.2
Q ss_pred cccccccccc-----cceeccCCCCcccHHHHHHH
Q 010664 98 QCPICLGIIR-----KTRTVMECLHRFCRECIDKA 127 (504)
Q Consensus 98 ~CpICl~~~~-----~Pv~v~~CgH~FC~~CI~~~ 127 (504)
-||-|...+. .+|....|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4888877553 23544459999999997766
No 120
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=30.51 E-value=96 Score=26.78 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=41.6
Q ss_pred EEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccc-eEEEE
Q 010664 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYL 413 (504)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e-~e~~~ 413 (504)
|-+++=......+|.|.+--.--..++||.++..+|-.++.+.+++ |=+||
T Consensus 32 IPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 83 (119)
T 3h9d_A 32 LPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT 83 (119)
T ss_dssp EEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE
T ss_pred EEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE
Confidence 4444445567889999999888999999999999999999998887 44444
No 121
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.17 E-value=3.4 Score=34.98 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=27.7
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCccccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 143 (504)
..||+|...+.. . =++.+|..|-..+.. ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-~----g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-D----NGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-E----TTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee-c----CCEEECccccchhhc--cccCcchhhHHH
Confidence 789999988763 1 134458888654332 358999998775
No 122
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.82 E-value=50 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.406 Sum_probs=24.5
Q ss_pred cccccccccccccccccce-eccCCCCcccHHHHHHH
Q 010664 92 DIRKEVQCPICLGIIRKTR-TVMECLHRFCRECIDKA 127 (504)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv-~v~~CgH~FC~~CI~~~ 127 (504)
.+..+-.|.||...-..-. ..--|+-.|+..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 3445678999985443211 02358999999999986
No 123
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=29.66 E-value=6.2 Score=31.63 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=22.4
Q ss_pred cccccc--cccccc-----cceecc-----CCCCcccHHHHHHHh
Q 010664 96 EVQCPI--CLGIIR-----KTRTVM-----ECLHRFCRECIDKAM 128 (504)
Q Consensus 96 ~l~CpI--Cl~~~~-----~Pv~v~-----~CgH~FC~~CI~~~l 128 (504)
-.-||- |...+. ..|... .|++.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 345876 766553 234433 699999999988773
No 124
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.21 E-value=12 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=20.3
Q ss_pred ccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccc
Q 010664 105 IIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (504)
Q Consensus 105 ~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 142 (504)
++..|..+..||+.|+. -+. ....||.|+..-
T Consensus 63 L~v~p~~C~~CG~~F~~-----~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFKA-----EIN-IPSRCPKCKSEW 94 (105)
T ss_dssp EEECCCBBTTTCCBCCC-----CSS-CCSSCSSSCCCC
T ss_pred EEEECcChhhCcCeecc-----cCC-CCCCCcCCCCCc
Confidence 33344446899999921 112 457899999754
No 125
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=28.89 E-value=71 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.6
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 47788999999999999999999999988764
No 126
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.69 E-value=75 Score=24.01 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=35.1
Q ss_pred ceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 360 QLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 360 e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.|.|.+. .++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 7 ~m~i~vk--~~~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 7 GMQLTVK--ALQGREC------SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SEEEEEE--ETTSCEE------EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred cEEEEEE--eCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4555554 4445432 36788999999999999999999999888765
No 127
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=28.62 E-value=60 Score=25.69 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.3
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 36788999999999999999999999987664
No 128
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.08 E-value=21 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=23.8
Q ss_pred ccccccccccccceeccCC-CCcccHHHHHHHh
Q 010664 97 VQCPICLGIIRKTRTVMEC-LHRFCRECIDKAM 128 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~C-gH~FC~~CI~~~l 128 (504)
.-|.||.+.-. +....| +-.||..|..+.-
T Consensus 9 pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNEDAT--LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCSCCC--EEETTTTSEEECSSHHHHHT
T ss_pred CeeEEeCCCCe--EEecCCCCceehHHHHHHHc
Confidence 45999999843 445889 7899999998875
No 129
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=27.20 E-value=32 Score=25.93 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=30.4
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHhh---cCCCCCCCCcc
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRT 140 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 140 (504)
...|.||... .+-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 11 ~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4579999874 23333346888999999987543 24568999975
No 130
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.98 E-value=19 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.518 Sum_probs=20.5
Q ss_pred cccccccccccc----cceeccCCCCcccHHHH
Q 010664 96 EVQCPICLGIIR----KTRTVMECLHRFCRECI 124 (504)
Q Consensus 96 ~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI 124 (504)
.-.|.+|...|. ..+....|.|.+|..|-
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 457999999883 22334678888888774
No 131
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.92 E-value=60 Score=25.86 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=35.1
Q ss_pred cCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
...|.|++... ++.+ .|.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 15 ~~~m~i~Vk~~---g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 15 SRIIRVSVKTP---QDCH------EFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SCEEEEEEECS---SSEE------EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred CCcEEEEEEEC---CeEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 34556655543 4433 47888999999999999999999988876654
No 132
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=25.25 E-value=95 Score=26.74 Aligned_cols=77 Identities=13% Similarity=0.278 Sum_probs=53.5
Q ss_pred EEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEEEecccccCCCCCCCCCcccCCCcchhhhc
Q 010664 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 442 (504)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 442 (504)
|-+++=...+..+|.|.|--.--..++||.++..+|-.++.+.+++- ||+--+. . . ++ .
T Consensus 31 iPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~a-lFl~Vn~--~-~-p~----------~------ 89 (118)
T 3rui_B 31 IPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKA-IFIFVND--T-L-PP----------T------ 89 (118)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCC-EEEEBTT--B-C-CC----------T------
T ss_pred eEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCcc-EEEEECC--c-c-CC----------c------
Confidence 34444455677899999987779999999999999999999988774 3332121 1 1 11 1
Q ss_pred cccccccccccc-cCCCCceE
Q 010664 443 NEQETLTGLQTQ-NLGHGFLV 462 (504)
Q Consensus 443 ~~~~~l~~l~~~-~~~~g~l~ 462 (504)
..||++|+.. -..-|.|+
T Consensus 90 --~~~m~~lY~~~kdeDGfLy 108 (118)
T 3rui_B 90 --AALMSAIYQEHKDKDGFLY 108 (118)
T ss_dssp --TSBHHHHHHHHCCTTSCEE
T ss_pred --cchHHHHHHHcCCCCCeEE
Confidence 2478888887 45677774
No 133
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.15 E-value=56 Score=29.04 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=35.5
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.-|.|..|...|..... ..=|..||..|..+.+. ..|..|...+..
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeeccccccccc---ccccccccccCC
Confidence 56899999998875443 44578899999887654 679999888764
No 134
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=25.06 E-value=85 Score=23.79 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=35.3
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.+|.|++. .++++.+ .|.+.|+.||..|-+.|+..+..++++.-|+.
T Consensus 3 ~~m~i~Vk--~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 3 EPLSILVR--NNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp CCEEEEEE--CTTSCEE------EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCEEEEEE--eCCCCEE------EEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 45555544 3445533 37888999999999999999999999886653
No 135
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.25 E-value=82 Score=26.16 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=34.2
Q ss_pred EEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
++|.+-.++++.+ .|.+.|+.||..|-+.|+.++.++++..=|+.
T Consensus 36 m~I~Vk~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEeCCCCEE------EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 3344444556543 47889999999999999999999999886654
No 136
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=23.98 E-value=68 Score=24.74 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=35.1
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
..|.|++. .++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 11 ~~m~i~vk--~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 11 GSMLIKVK--TLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp CCEEEEEE--CTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CcEEEEEE--cCCCCEE------EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 44555444 4455533 47888999999999999999999998876654
No 137
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=23.18 E-value=1.4e+02 Score=26.35 Aligned_cols=49 Identities=8% Similarity=0.276 Sum_probs=36.1
Q ss_pred ccCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 357 KDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 357 ~~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
....|.|+++. +++++++ |.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 17 ~~~~m~i~Vk~--~~g~~~~------l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~ 65 (172)
T 3u30_A 17 RGSHMQIFVKT--LTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65 (172)
T ss_dssp --CCEEEEEEE--TTTEEEE------EEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCcEEEEEEe--CCCCEEE------EEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 33456666554 4555432 6788999999999999999999999887664
No 138
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.77 E-value=35 Score=31.05 Aligned_cols=48 Identities=15% Similarity=0.396 Sum_probs=35.7
Q ss_pred cccccccccccccc---ceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+-|.|..|...|.. +. ...=|..||..|..+.+. ....|+.|.+.+..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG-NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHS-CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceE-EEeCCccccccccccccc-cCCccccCCCcccc
Confidence 56899999998874 43 345578899999887764 11269999998863
No 139
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=22.67 E-value=98 Score=24.33 Aligned_cols=48 Identities=8% Similarity=0.247 Sum_probs=36.1
Q ss_pred cCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
...|.|+++ .++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 15 ~~~m~i~Vk--~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 15 RGSMQIFVN--TLTGTHI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp CCSEEEEEE--CTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCeEEEEEE--eCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 345555554 4456543 47788999999999999999999999876654
No 140
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=22.46 E-value=81 Score=25.36 Aligned_cols=50 Identities=6% Similarity=0.159 Sum_probs=35.5
Q ss_pred cccCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 356 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 356 ~~~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
..+..|.|+++. ++++.+ .|.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 18 ~~~~~m~I~Vk~--~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 18 FQGRPMQIFVKT--LTGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp ----CCEEEEEE--TTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCeEEEEEEe--CCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 444566666654 355532 36788999999999999999999999886654
No 141
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=22.25 E-value=1.1e+02 Score=23.73 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=36.0
Q ss_pred cCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
...+.|++. .++++.+ .+.+.|+.||..|-+.|+.++..+++..-|+.
T Consensus 15 ~~~m~i~Vk--~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 15 PDSLEVLVK--TLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp CCEEEEEEE--ETTSCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCeEEEEEE--cCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 345555554 3455532 46888999999999999999999999886653
No 142
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=22.00 E-value=96 Score=25.93 Aligned_cols=47 Identities=4% Similarity=0.150 Sum_probs=37.8
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.||.|.+..+. ++.+ .|.+.|+.||..|-+-|+.++.++++..-|+.
T Consensus 8 ~~~~i~vk~l~--G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 8 GEFQIFAKTLT--GKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp CCCEEEEEETT--CCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CcEEEEEEeCC--CcEE------EEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 57777776654 5433 36788999999999999999999999988765
No 143
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.74 E-value=77 Score=23.63 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=24.3
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhh
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (504)
.-|.|..|...|........=+..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 45788888888764322344577889888877765
No 144
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.72 E-value=22 Score=32.45 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=30.0
Q ss_pred ccccccccccccceeccCCCCcccHHHHHHHhhc---CCCCCCCCcccc
Q 010664 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL---GNNECPACRTHC 142 (504)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~---~~~~CP~CR~~~ 142 (504)
..|.+|.+-= +-+..-.|...|+..|+..-+.. +...||.|+..-
T Consensus 5 ~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCCCC-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4599998642 22333468888999998665442 446899998743
No 145
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.59 E-value=49 Score=29.81 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=34.2
Q ss_pred ccccccccccccccceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
.-|.|..|...|..... ..=|..||..|..+.+. ..|..|...+..
T Consensus 86 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS---CCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCce-eECCEeeecCccccccc---cccccCCCccCC
Confidence 56889999988875432 34577899999876543 689999988764
No 146
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.26 E-value=12 Score=28.34 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=30.1
Q ss_pred ccccccccccccc---cceeccCCCCcccHHHHHHHhh----cCCCCCCCCccc
Q 010664 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMR----LGNNECPACRTH 141 (504)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~ 141 (504)
+...|+||...+. .-|..-.|..-|+..|+.-... .....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3467999998764 2334446777788888743211 145789999764
No 147
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=21.24 E-value=1e+02 Score=24.16 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=28.0
Q ss_pred ccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 382 yl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
.|.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 46888999999999999999999999886654
No 148
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=20.40 E-value=1.2e+02 Score=25.22 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=28.5
Q ss_pred cccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 383 l~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 7889999999999999999999999888875
No 149
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.40 E-value=55 Score=27.53 Aligned_cols=48 Identities=13% Similarity=0.345 Sum_probs=35.1
Q ss_pred cccccccccccccc---ceeccCCCCcccHHHHHHHhhcCCCCCCCCcccccC
Q 010664 95 KEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (504)
Q Consensus 95 ~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 144 (504)
+-|.|..|...|.. +. ...=|..||..|..+.+. ....|..|...+..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 56899999998852 33 244578899999988764 11279999998863
No 150
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=20.36 E-value=1.1e+02 Score=23.17 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=34.6
Q ss_pred EEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
+.|.+-.++++.+ .|.+.|+-||..|-+.++.+..+++++.-++.
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 4 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 4445555566543 47889999999999999999999988876644
No 151
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.21 E-value=73 Score=25.11 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=16.6
Q ss_pred cccccccccccccceeccCCCCcccHHHHHHHh
Q 010664 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAM 128 (504)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l 128 (504)
-|.|..|...|..-.....=+..||..|..+.+
T Consensus 51 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 51 EFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred CCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 456666665555322223345556666655543
No 152
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=20.05 E-value=1.2e+02 Score=23.73 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=35.7
Q ss_pred cCceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccceEEEE
Q 010664 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (504)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e~e~~~ 413 (504)
+.++.|.+. .++++.+ .+.+.|+.||..|-+.|+.++.++++..-|+.
T Consensus 2 ~~~m~I~Vk--~~~g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 2 DEPLSILVR--NNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CCEEEEEEE--ETTSCEE------EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CccEEEEEE--CCCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 445555444 3445433 47788999999999999999999999887763
No 153
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=20.04 E-value=1.4e+02 Score=25.10 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=37.3
Q ss_pred CceeEEEEEEecccCCCCCCCCCccccCCcccHHHHHHHHHhhhcccccc
Q 010664 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE 408 (504)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~~v~hl~~~va~~~~~~~~e 408 (504)
+.+-| .+-......+|-|++-=.-...++||.++..+|-.++.+.+++
T Consensus 26 ~~IPV--ive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~ 73 (110)
T 2r2q_A 26 DRVPV--IVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPED 73 (110)
T ss_dssp TEEEE--EEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTS
T ss_pred CceEE--EEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCC
Confidence 55433 3334456679999988777788999999999999999997776
Done!