BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010665
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL--RNLWQHVWRRQSSMVSGNETQD 66
+P+I+++++D+V + + GA DYL+KP +EL R Q R S+ G+ T D
Sbjct: 109 LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSXGDLTLD 168
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 35.4 bits (80), Expect = 0.074, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 44
KN+P+I++ S + + + GA DYL KP RN+L
Sbjct: 75 KNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 2 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 44
+H + K +P++ +++Q +S GA DYL KP EL
Sbjct: 72 QHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58
+ ++IPV+M++++ + + GA DY+ KP EL + V RR S M
Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPM 126
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58
+ ++IPV+M++++ + + GA DY+ KP EL + V RR S M
Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPM 126
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 44
E KN VIM+S+ V C+++GA ++VKP+ R ++
Sbjct: 107 EFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKV 147
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57
++PV ++S++ SV + GA DYLVKP EL + + RR+ S
Sbjct: 79 DVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 128
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 10 PVIMMSSQDSVSTVYKCMMRGAADYLVKPV 39
P+I++S +S + + GAADYL+KP+
Sbjct: 79 PIIVLSGAGVMSDAVEALRLGAADYLIKPL 108
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 393 AVSRLNSMGYGSA--CGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFR 450
AV +S+G A GSNS + V GR A E E NGN +I+ +AA + R
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 451 LK 452
LK
Sbjct: 437 LK 438
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 393 AVSRLNSMGYGSA--CGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFR 450
AV +S+G A GSNS + V GR A E E NGN +I+ +AA + R
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 451 LK 452
LK
Sbjct: 437 LK 438
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 393 AVSRLNSMGYGSA--CGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFR 450
AV +S+G A GSNS + V GR A E E NGN +I+ +AA + R
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 451 LK 452
LK
Sbjct: 437 LK 438
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 393 AVSRLNSMGYGSA--CGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFR 450
AV +S+G A GSNS + V GR A E E NGN +I+ +AA + R
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 451 LK 452
LK
Sbjct: 437 LK 438
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 4 EICK------NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54
++CK ++PVIM++++DS + GA DY+ KP EL + V RR
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 10 PVIMMSSQDSVSTVYKCMMRGAADYLVKPV 39
P+I++S S + + GAADYL+KP+
Sbjct: 79 PIIVLSGAGVXSDAVEALRLGAADYLIKPL 108
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56
N PV+M+++ V K + GA DYL KP EL + + RR+S
Sbjct: 74 NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56
+ ++IPV+M++++ + + GA DY+ KP EL + V RR S
Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54
++P++M+S++DS + GA DY+ KP EL+ + + RR
Sbjct: 72 SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54
++P++M+S++DS + GA DY+ KP EL+ + + RR
Sbjct: 72 SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNET 64
I IP++ +++ + + M GA ++L KP L + + + + ET
Sbjct: 73 ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARET 132
Query: 65 QDE 67
QD+
Sbjct: 133 QDQ 135
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 11 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 44
V+++S+ D + VY+ + +GAA +L+K R E+
Sbjct: 92 VLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEI 125
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 2 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 44
+ E+ K IPV++M++ + + C + Y+VKP+ + L
Sbjct: 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRL 128
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56
+PVI++S++ S + GA DYL KP EL+ + RR S
Sbjct: 73 VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 10 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR-NELRNL 47
PV+++S+ ++++ + K + G D L+KPV+ N LR +
Sbjct: 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 38
K IP+IM++++ + V + G +Y+VKP
Sbjct: 80 KEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 38
K IP+IM++++ + V + G +Y+VKP
Sbjct: 80 KEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 38
K IP+IM++++ + V + G +Y+VKP
Sbjct: 80 KEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 4 EICKNI-------PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56
E+CK + P++M++++D + GA DY+ KP E+ + + RR
Sbjct: 64 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123
Query: 57 SMVSGNETQDESV 69
+E +++ +
Sbjct: 124 IRAPSSEMKNDEM 136
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56
++P++++++++S + + GA DY+ KP E+ Q + RR S
Sbjct: 72 SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRRNS 120
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 43
+P++M++++ V + GA DY++KP + E
Sbjct: 77 VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.124 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,962,502
Number of Sequences: 62578
Number of extensions: 539023
Number of successful extensions: 1089
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 37
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)