Query 010665
Match_columns 504
No_of_seqs 369 out of 2186
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 3.8E-18 8.2E-23 168.2 12.2 142 5-167 69-224 (229)
2 PF06203 CCT: CCT motif; Inte 99.7 5.3E-19 1.1E-23 130.8 3.1 45 442-486 1-45 (45)
3 PRK10816 DNA-binding transcrip 99.5 1.9E-13 4.2E-18 129.8 12.4 138 5-167 69-219 (223)
4 PRK09836 DNA-binding transcrip 99.5 2.5E-13 5.5E-18 129.3 12.2 138 6-167 70-220 (227)
5 PRK09468 ompR osmolarity respo 99.5 2.7E-13 5.9E-18 130.3 12.3 142 6-168 75-233 (239)
6 PRK10529 DNA-binding transcrip 99.5 3.8E-13 8.2E-18 127.7 12.7 139 6-167 70-222 (225)
7 PRK10701 DNA-binding transcrip 99.4 1.3E-12 2.9E-17 125.9 12.7 149 7-168 71-233 (240)
8 PRK10766 DNA-binding transcrip 99.4 1.6E-12 3.4E-17 123.1 12.7 132 7-154 72-212 (221)
9 PRK11173 two-component respons 99.4 2.5E-12 5.3E-17 124.0 12.5 141 7-167 73-231 (237)
10 PRK11517 transcriptional regul 99.4 2.7E-12 5.9E-17 121.2 12.3 135 7-167 70-217 (223)
11 PRK10643 DNA-binding transcrip 99.4 2.8E-12 6.1E-17 120.5 12.2 139 5-168 69-216 (222)
12 TIGR01387 cztR_silR_copR heavy 99.4 4.3E-12 9.3E-17 118.9 12.4 137 5-166 67-216 (218)
13 PRK10161 transcriptional regul 99.4 4.5E-12 9.7E-17 120.9 12.5 138 6-167 74-224 (229)
14 PRK10336 DNA-binding transcrip 99.4 5.8E-12 1.2E-16 118.4 12.0 138 5-167 69-215 (219)
15 PRK13856 two-component respons 99.4 7E-12 1.5E-16 121.5 12.5 142 7-168 71-227 (241)
16 PRK11083 DNA-binding response 99.3 1.6E-11 3.5E-16 115.9 11.5 127 6-155 73-208 (228)
17 PRK10955 DNA-binding transcrip 99.3 4.9E-11 1.1E-15 113.3 12.4 130 9-155 72-210 (232)
18 TIGR02154 PhoB phosphate regul 99.3 4.8E-11 1E-15 112.2 12.1 126 6-155 74-208 (226)
19 TIGR03787 marine_sort_RR prote 99.2 5.9E-11 1.3E-15 112.8 12.0 138 6-167 72-224 (227)
20 PRK15479 transcriptional regul 99.2 7.2E-11 1.6E-15 110.9 11.7 136 6-167 70-216 (221)
21 CHL00148 orf27 Ycf27; Reviewed 99.2 1.1E-10 2.4E-15 111.5 12.5 128 7-155 76-217 (240)
22 PRK10710 DNA-binding transcrip 99.1 1E-09 2.2E-14 104.8 12.3 127 6-155 79-214 (240)
23 COG4566 TtrR Response regulato 99.0 1.2E-09 2.6E-14 104.2 6.7 103 5-148 73-177 (202)
24 PRK09935 transcriptional regul 98.7 5.4E-08 1.2E-12 90.6 9.5 115 5-154 74-193 (210)
25 PRK09958 DNA-binding transcrip 98.7 1.6E-07 3.5E-12 87.5 10.6 114 5-155 70-188 (204)
26 PRK11475 DNA-binding transcrip 98.6 1.6E-07 3.5E-12 91.4 10.2 105 4-150 64-171 (207)
27 PRK10360 DNA-binding transcrip 98.5 5.3E-07 1.1E-11 83.5 10.8 106 7-154 71-181 (196)
28 COG2197 CitB Response regulato 98.5 4.5E-07 9.7E-12 88.5 10.3 115 4-151 70-186 (211)
29 PRK10840 transcriptional regul 98.5 3.2E-07 6.9E-12 88.0 8.5 110 5-151 77-188 (216)
30 PRK09483 response regulator; P 98.5 6.8E-07 1.5E-11 84.2 9.4 116 5-154 72-192 (217)
31 PRK10403 transcriptional regul 98.4 1.9E-06 4.1E-11 80.0 9.8 117 5-155 77-198 (215)
32 PRK10651 transcriptional regul 98.3 3.7E-06 8E-11 78.3 9.0 114 6-151 78-193 (216)
33 PRK15369 two component system 98.2 5.9E-06 1.3E-10 75.9 9.6 114 6-154 75-193 (211)
34 COG2204 AtoC Response regulato 98.0 8.1E-06 1.8E-10 88.3 6.4 53 5-57 73-125 (464)
35 PRK10100 DNA-binding transcrip 97.9 5E-05 1.1E-09 74.5 9.4 112 4-150 77-192 (216)
36 COG3706 PleD Response regulato 97.9 1.2E-05 2.6E-10 86.3 5.3 86 3-102 201-286 (435)
37 PF00072 Response_reg: Respons 97.8 4E-05 8.8E-10 64.8 6.3 44 6-49 69-112 (112)
38 PRK10430 DNA-binding transcrip 97.7 0.0002 4.4E-09 70.0 10.0 51 5-55 74-124 (239)
39 PRK15411 rcsA colanic acid cap 97.7 0.00015 3.2E-09 70.4 8.6 99 4-150 73-174 (207)
40 COG3947 Response regulator con 97.7 5.8E-05 1.3E-09 76.8 5.5 122 4-154 68-201 (361)
41 PRK09390 fixJ response regulat 97.5 0.00019 4.2E-09 65.5 6.8 110 5-155 72-186 (202)
42 COG4565 CitB Response regulato 97.5 0.00014 3E-09 71.1 4.9 55 4-58 70-124 (224)
43 PRK07239 bifunctional uroporph 97.5 0.00037 7.9E-09 73.6 8.3 70 95-168 293-372 (381)
44 PRK10046 dpiA two-component re 97.3 0.00051 1.1E-08 66.7 6.8 52 6-57 76-127 (225)
45 PF00486 Trans_reg_C: Transcri 97.3 0.0002 4.2E-09 57.9 3.2 51 106-156 1-60 (77)
46 cd00383 trans_reg_C Effector d 97.3 0.00031 6.7E-09 58.8 4.4 59 95-155 10-77 (95)
47 COG4753 Response regulator con 97.3 0.0003 6.5E-09 76.4 5.3 53 4-56 72-124 (475)
48 COG4567 Response regulator con 97.2 0.00033 7.3E-09 65.3 3.7 46 4-49 77-122 (182)
49 TIGR02915 PEP_resp_reg putativ 97.2 0.00063 1.4E-08 72.7 6.4 51 5-55 70-120 (445)
50 PRK10693 response regulator of 97.1 0.00089 1.9E-08 68.7 6.8 51 5-55 42-93 (303)
51 COG3437 Response regulator con 97.1 0.00049 1.1E-08 71.9 4.8 51 4-54 85-135 (360)
52 PRK09581 pleD response regulat 97.1 0.0006 1.3E-08 71.4 5.3 50 5-54 225-274 (457)
53 PLN03029 type-a response regul 96.9 0.0017 3.8E-08 63.6 6.6 49 6-54 100-148 (222)
54 PRK10610 chemotaxis regulatory 96.9 0.0044 9.4E-08 51.2 7.5 50 6-55 78-127 (129)
55 TIGR02875 spore_0_A sporulatio 96.6 0.0047 1E-07 61.0 6.9 47 8-54 78-124 (262)
56 PRK09581 pleD response regulat 96.5 0.0059 1.3E-07 64.0 7.4 49 7-55 75-123 (457)
57 PRK11906 transcriptional regul 96.5 0.0032 6.8E-08 68.1 5.1 68 98-168 21-101 (458)
58 PRK11361 acetoacetate metaboli 96.4 0.0047 1E-07 66.1 6.0 51 5-55 73-123 (457)
59 PRK10153 DNA-binding transcrip 96.4 0.0034 7.4E-08 69.4 4.6 73 94-169 14-101 (517)
60 smart00862 Trans_reg_C Transcr 96.4 0.005 1.1E-07 49.5 4.4 49 107-155 2-60 (78)
61 PRK15115 response regulator Gl 96.4 0.0047 1E-07 66.0 5.5 51 5-55 74-124 (444)
62 COG0784 CheY FOG: CheY-like re 96.3 0.011 2.3E-07 51.1 6.7 48 6-53 77-125 (130)
63 PRK10923 glnG nitrogen regulat 96.3 0.007 1.5E-07 65.3 6.6 51 5-55 72-122 (469)
64 PRK11107 hybrid sensory histid 96.2 0.0085 1.9E-07 69.2 6.9 51 5-55 738-788 (919)
65 PRK13435 response regulator; P 96.2 0.0096 2.1E-07 53.0 5.7 48 7-57 77-124 (145)
66 TIGR01818 ntrC nitrogen regula 96.2 0.0085 1.8E-07 64.4 6.2 51 5-55 67-117 (463)
67 PRK14084 two-component respons 96.1 0.012 2.6E-07 57.3 6.3 48 6-55 72-119 (246)
68 COG3707 AmiR Response regulato 96.1 0.014 3E-07 56.6 6.5 51 5-55 74-124 (194)
69 PRK10365 transcriptional regul 96.0 0.0063 1.4E-07 64.7 4.4 51 5-55 74-124 (441)
70 PRK15347 two component system 95.9 0.015 3.3E-07 67.3 7.3 49 6-54 764-812 (921)
71 PRK12370 invasion protein regu 95.8 0.0086 1.9E-07 66.4 4.4 64 104-168 29-105 (553)
72 PRK11466 hybrid sensory histid 95.8 0.015 3.2E-07 67.6 6.3 51 5-55 751-801 (914)
73 cd00156 REC Signal receiver do 95.5 0.021 4.5E-07 44.5 4.5 46 6-51 67-112 (113)
74 PF09425 CCT_2: Divergent CCT 95.4 0.0084 1.8E-07 40.1 1.6 26 439-465 1-26 (27)
75 PRK09959 hybrid sensory histid 95.4 0.027 5.8E-07 67.6 7.0 50 5-54 1027-1076(1197)
76 PRK11697 putative two-componen 95.4 0.035 7.7E-07 53.4 6.5 45 8-54 74-118 (238)
77 TIGR02956 TMAO_torS TMAO reduc 95.3 0.03 6.4E-07 65.3 6.8 47 9-55 778-824 (968)
78 PRK13837 two-component VirA-li 95.2 0.025 5.4E-07 65.7 5.4 50 5-55 766-815 (828)
79 COG3710 CadC DNA-binding winge 95.0 0.025 5.3E-07 52.7 4.0 71 97-170 20-104 (148)
80 PRK12555 chemotaxis-specific m 94.2 0.087 1.9E-06 54.6 6.2 46 8-53 73-129 (337)
81 PRK13558 bacterio-opsin activa 93.9 0.095 2.1E-06 58.9 6.2 50 5-54 76-127 (665)
82 KOG1601 GATA-4/5/6 transcripti 93.5 0.03 6.6E-07 54.5 1.1 42 438-479 289-330 (340)
83 PRK11091 aerobic respiration c 92.7 0.2 4.3E-06 57.5 6.4 48 7-55 598-646 (779)
84 PRK00742 chemotaxis-specific m 92.4 0.26 5.6E-06 51.4 6.3 44 9-52 77-131 (354)
85 TIGR03815 CpaE_hom_Actino heli 90.1 0.45 9.7E-06 49.1 5.2 44 9-52 42-86 (322)
86 COG3279 LytT Response regulato 81.7 1.3 2.7E-05 44.4 3.2 47 6-54 73-119 (244)
87 PRK12704 phosphodiesterase; Pr 75.8 2.6 5.6E-05 47.0 3.7 46 9-54 250-297 (520)
88 PRK15320 transcriptional activ 75.4 4.5 9.8E-05 39.9 4.7 60 106-170 160-224 (251)
89 COG2201 CheB Chemotaxis respon 72.8 7.3 0.00016 41.4 5.9 34 7-40 73-108 (350)
90 PF00196 GerE: Bacterial regul 67.4 6 0.00013 30.3 3.0 41 109-154 2-47 (58)
91 PRK11107 hybrid sensory histid 58.1 17 0.00036 42.3 5.7 45 8-52 606-650 (919)
92 PRK09191 two-component respons 57.9 16 0.00034 35.5 4.7 31 25-55 225-255 (261)
93 PRK13870 transcriptional regul 57.8 12 0.00025 37.3 3.8 42 108-154 171-217 (234)
94 PRK10188 DNA-binding transcrip 49.8 17 0.00038 36.2 3.6 42 108-154 177-223 (240)
95 PRK13719 conjugal transfer tra 42.8 29 0.00062 34.6 3.8 38 107-149 140-179 (217)
96 COG3706 PleD Response regulato 42.5 15 0.00032 40.3 1.9 46 11-56 61-106 (435)
97 COG2771 CsgD DNA-binding HTH d 41.1 40 0.00086 25.5 3.7 36 109-149 3-40 (65)
98 PF01408 GFO_IDH_MocA: Oxidore 39.5 44 0.00095 28.5 4.1 44 11-54 67-112 (120)
99 PRK13111 trpA tryptophan synth 39.0 73 0.0016 32.4 6.2 49 5-53 86-140 (258)
100 PRK15201 fimbriae regulatory p 38.4 39 0.00084 33.0 3.8 36 110-150 133-170 (198)
101 smart00521 CBF CCAAT-Binding t 36.8 46 0.00099 26.8 3.3 25 459-483 36-61 (62)
102 COG1908 FrhD Coenzyme F420-red 36.5 46 0.00099 30.4 3.7 37 7-43 28-66 (132)
103 TIGR00262 trpA tryptophan synt 31.0 1.3E+02 0.0028 30.4 6.5 46 7-52 86-137 (256)
104 CHL00162 thiG thiamin biosynth 29.9 1.7E+02 0.0037 30.1 7.0 50 6-55 187-241 (267)
105 PF06490 FleQ: Flagellar regul 29.3 56 0.0012 28.6 3.1 43 4-51 65-107 (109)
106 PLN02591 tryptophan synthase 28.0 1.6E+02 0.0034 29.9 6.5 47 7-53 77-129 (250)
107 cd04724 Tryptophan_synthase_al 26.7 1.8E+02 0.0039 29.0 6.6 46 8-53 76-127 (242)
108 KOG4175 Tryptophan synthase al 23.8 1.7E+02 0.0036 29.3 5.5 44 4-47 91-140 (268)
109 TIGR01037 pyrD_sub1_fam dihydr 22.7 1.4E+02 0.003 30.4 5.0 49 8-56 234-288 (300)
110 PRK04841 transcriptional regul 21.6 83 0.0018 36.7 3.5 39 109-152 837-877 (903)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.76 E-value=3.8e-18 Score=168.18 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=114.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
....+||||||+.++..+.+.++++||||||+|||++.||+++|+.++||..............++
T Consensus 69 ~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g-------------- 134 (229)
T COG0745 69 KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFG-------------- 134 (229)
T ss_pred cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcCcccccccceeEEC--------------
Confidence 456789999999999999999999999999999999999999999999987531001111122222
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
+++.....+.+. ..+..+.||++||+||.+|++|+ ++|++.+|+++.....++||+| +|.||+.
T Consensus 135 -----~l~id~~~~~v~--~~~~~i~Lt~~Ef~lL~~L~~~~g~v~sR~~L~~~vw~~~~~~~~rtvdvhI~rLR~Kl~~ 207 (229)
T COG0745 135 -----DLTLDPDTRTVT--LNGRELTLTPKEFELLELLARHPGRVLSREQLLEAVWGYDFEVDSRTVDVHISRLRKKLEK 207 (229)
T ss_pred -----CEEEEcCcCEEE--ECCEEecCChHHHHHHHHHHhCCCccCCHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhcc
Confidence 333444467777 67899999999999999999998 8999999999988999999999 6889887
Q ss_pred C-----CCCCcccccCc
Q 010665 156 K-----SLVPVTEAQGS 167 (504)
Q Consensus 156 ~-----~~~~~~~~~~~ 167 (504)
. .|......||+
T Consensus 208 ~~~~~~~I~Tvrg~GY~ 224 (229)
T COG0745 208 DPGAGRLIRTVRGVGYR 224 (229)
T ss_pred CCCCCCeEEEEcccceE
Confidence 7 35666666664
No 2
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.75 E-value=5.3e-19 Score=130.76 Aligned_cols=45 Identities=56% Similarity=0.986 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhhhhhhcCCCCCccccccCC
Q 010665 442 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVH 486 (504)
Q Consensus 442 r~~~~~r~~~k~~~r~~~k~~ry~~rk~~a~~r~r~kg~f~~~~~ 486 (504)
|+++|+||++||+.|+|+|+|+|+|||.+|+.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 689999999999999999999999999999999999999999864
No 3
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.49 E-value=1.9e-13 Score=129.79 Aligned_cols=138 Identities=18% Similarity=0.211 Sum_probs=105.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++++..+......++..||++||.||++..+|..+|+.++++.... ......++.
T Consensus 69 ~~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~~~~----~~~~~~~~~------------- 131 (223)
T PRK10816 69 NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL----ASQVISLPP------------- 131 (223)
T ss_pred cCCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhccccC----CCCeEEECC-------------
Confidence 346899999999999999999999999999999999999999999998764211 111111111
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
+......+.+. ..+..+.||++|+++|.+|+.++ ++|++.+|+.+.....++++.| +|.||+.
T Consensus 132 ------~~~~~~~~~~~--~~~~~i~Lt~~E~~ll~~L~~~~~~vvs~~~l~~~~w~~~~~~~~~~v~~~i~rLR~kl~~ 203 (223)
T PRK10816 132 ------FQVDLSRRELS--INDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQA 203 (223)
T ss_pred ------EEEEcccCEEE--ECCEEEeCCHHHHHHHHHHHhCCCeeEcHHHHHHHhcCCCCCCCcCCHHHHHHHHHHHhcc
Confidence 22223355666 67788999999999999999887 8999999999887888999999 6788853
Q ss_pred C----CCCCcccccCc
Q 010665 156 K----SLVPVTEAQGS 167 (504)
Q Consensus 156 ~----~~~~~~~~~~~ 167 (504)
. .|......||.
T Consensus 204 ~~~~~~i~tv~g~GY~ 219 (223)
T PRK10816 204 QYPQEVITTVRGQGYR 219 (223)
T ss_pred CCCCCcEEEecCcceE
Confidence 2 24444555553
No 4
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.48 E-value=2.5e-13 Score=129.31 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=104.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++++..+......+++.||++||.||++..+|..+|+.++++..... ......++.
T Consensus 70 ~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~~-------------- 132 (227)
T PRK09836 70 NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVI---IESQFQVAD-------------- 132 (227)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcccccC---CCCcEEEcC--------------
Confidence 468999999999999999999999999999999999999999999887642210 001111111
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
++.....+.+. ..+..+.||++|+++|.+|++|+ ++|++.+|+.+.....++++.| +|.||+..
T Consensus 133 -----~~~~~~~~~~~--~~~~~i~Lt~~E~~ll~~l~~~~g~~~sr~~l~~~~w~~~~~~~~~~v~~~i~~lR~Kl~~~ 205 (227)
T PRK09836 133 -----LMVDLVSRKVT--RSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND 205 (227)
T ss_pred -----EEEEcccCEEE--ECCEEEecCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcCCHHHHHHHHHHHhCCC
Confidence 11222244455 56778899999999999999976 8999999998877888999999 68888643
Q ss_pred ----CCCCcccccCc
Q 010665 157 ----SLVPVTEAQGS 167 (504)
Q Consensus 157 ----~~~~~~~~~~~ 167 (504)
.|......||.
T Consensus 206 ~~~~~i~tv~g~GY~ 220 (227)
T PRK09836 206 FEPKLIQTVRGVGYM 220 (227)
T ss_pred CCCCeEEEecCcceE
Confidence 24444555554
No 5
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.48 E-value=2.7e-13 Score=130.33 Aligned_cols=142 Identities=21% Similarity=0.199 Sum_probs=108.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCC---cccccccccchhhccccccc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGN---ETQDESVGQQKIEATSENDA 82 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~---~~~~~~~~~~~l~~~a~~da 82 (504)
.+.+|||++++..+......++..||++||.||++..+|..+|+.++++........ ......+
T Consensus 75 ~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~~~~~~~~~~~~~~~~~~------------- 141 (239)
T PRK09468 75 NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQAPELPGAPSQEEEVIAF------------- 141 (239)
T ss_pred CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccccccccccccCCCceEEE-------------
Confidence 468999999999999999999999999999999999999999999987643210000 0000111
Q ss_pred ccCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhc
Q 010665 83 ASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNY 153 (504)
Q Consensus 83 ~s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl 153 (504)
+++......+.+. ..+..+.||++|++||.+|+.|+ ++|++.+|+.+.....+++++| +|.||
T Consensus 142 ------~~~~~~~~~~~~~--~~~~~i~Lt~~E~~lL~~L~~~~~~~~sr~~l~~~vw~~~~~~~~~~l~~~i~~LR~kl 213 (239)
T PRK09468 142 ------GKFKLNLGTRELF--RGDEPMPLTTGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLI 213 (239)
T ss_pred ------CcEEEEcCcCEEE--ECCEEeecCHHHHHHHHHHHhCCCccCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHh
Confidence 1222333355666 67888999999999999999987 8999999998877889999999 78898
Q ss_pred CCC-----CCCCcccccCcc
Q 010665 154 GQK-----SLVPVTEAQGSE 168 (504)
Q Consensus 154 ~k~-----~~~~~~~~~~~~ 168 (504)
+.+ .|......||.=
T Consensus 214 ~~~~~~~~~I~tv~g~GY~~ 233 (239)
T PRK09468 214 EEDPAHPRYIQTVWGLGYVF 233 (239)
T ss_pred ccCCCCCCeEEEeCCCCeEE
Confidence 753 255556666643
No 6
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.47 E-value=3.8e-13 Score=127.73 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=105.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++++..+.....+++..||++||.||++..+|..+|+.++++..... .......++.
T Consensus 70 ~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~~~~~--~~~~~~~~~~-------------- 133 (225)
T PRK10529 70 WSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATP--APDPLVKFSD-------------- 133 (225)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccc--CCCcceeECC--------------
Confidence 357899999999999999999999999999999999999999999887653210 0000111111
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
++.....+.+. ..+..+.||++|+++|.+|+.++ ++|++.+|+.+.....++++.| +|.||+.+
T Consensus 134 -----~~~~~~~~~v~--~~~~~~~Lt~~E~~ll~~L~~~~~~~~s~~~l~~~vw~~~~~~~~~~~~~~i~rlR~kl~~~ 206 (225)
T PRK10529 134 -----VTVDLAARVIH--RGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQD 206 (225)
T ss_pred -----EEEEcccCEEE--ECCEEEECCHHHHHHHHHHHhCCCeeEcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC
Confidence 22222345555 67788899999999999999987 8999999999877888999998 68898753
Q ss_pred -----CCCCcccccCc
Q 010665 157 -----SLVPVTEAQGS 167 (504)
Q Consensus 157 -----~~~~~~~~~~~ 167 (504)
.|......||+
T Consensus 207 ~~~~~~i~tv~g~GY~ 222 (225)
T PRK10529 207 PARPRHFITETGIGYR 222 (225)
T ss_pred CCCCCeEEEcCCcceE
Confidence 25555566654
No 7
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.42 E-value=1.3e-12 Score=125.85 Aligned_cols=149 Identities=16% Similarity=0.115 Sum_probs=108.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
..+|||++++..+......++..||+|||.||+...+|..+|+.++++........... ..........
T Consensus 71 ~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~~--------- 139 (240)
T PRK10701 71 WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATQTKGLQ--ETSLTPYKAL--------- 139 (240)
T ss_pred CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcccccccccccc--ccccccccce---------
Confidence 46799999999999999999999999999999999999999999988753210000000 0000000000
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC-
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK- 156 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~- 156 (504)
..+.+......+.+. .++..+.||++||++|.+|+.|+ ++|.+.+|+.+.....+++++| +|.||+..
T Consensus 140 ~~~~~~~~~~~~~~~--~~~~~i~Lt~~E~~lL~~l~~~~~~v~sr~~l~~~vw~~~~~~~~~~i~~~i~rlR~kl~~~~ 217 (240)
T PRK10701 140 HFGTLTIDPVNRQVT--LAGEEISLSTADFDLLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNA 217 (240)
T ss_pred EecCEEEEcccCEEE--ECCeEeecCHHHHHHHHHHHhCCCccCcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHhcccCC
Confidence 012233344456666 77889999999999999999987 8999999998877788999999 68898753
Q ss_pred ----CCCCcccccCcc
Q 010665 157 ----SLVPVTEAQGSE 168 (504)
Q Consensus 157 ----~~~~~~~~~~~~ 168 (504)
.|......||.=
T Consensus 218 ~~~~~I~tv~g~GY~~ 233 (240)
T PRK10701 218 AEPYRIKTVRNKGYLF 233 (240)
T ss_pred CCCCEEEEECCCCEEE
Confidence 355666666654
No 8
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.42 E-value=1.6e-12 Score=123.15 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=100.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
+.+|||++++..+.....+++..||+|||.||++..+|..+|..++++....... ...... ....+
T Consensus 72 ~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~~~~~~-~~~~~~-~~~~~------------ 137 (221)
T PRK10766 72 STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRISLARQA-QPHAQE-EDNCY------------ 137 (221)
T ss_pred CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhcccccc-cccccC-CCCce------------
Confidence 5789999999999999999999999999999999999999999998875322000 000000 00000
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
..+.++-....+.+. .++..+.||++|++||.+|++|+ ++|++.+|+.+.....++++.| +|.||+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~v~Lt~~E~~ll~~l~~~~~~v~sr~~l~~~v~~~~~~~~~~~~~~~i~~LR~Kl~ 212 (221)
T PRK10766 138 RFAGYCLNVSRRTLE--RNGEPIKLTKAEYELLVAFVTNPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKLN 212 (221)
T ss_pred EECCEEEEcccCEEE--ECCEEecCCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCC
Confidence 011233334456666 78889999999999999999987 8999999998877788999999 677875
No 9
>PRK11173 two-component response regulator; Provisional
Probab=99.40 E-value=2.5e-12 Score=123.96 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=104.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcc----cccccccchhhccccccc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNET----QDESVGQQKIEATSENDA 82 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~----~~~~~~~~~l~~~a~~da 82 (504)
+.+|||+++++.+......++..||++||.||++..+|..+|+.++++.......... ....++
T Consensus 73 ~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~~~~~~~~~~~~~~~~~~~------------ 140 (237)
T PRK11173 73 ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFN------------ 140 (237)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhccccccccccccccccceEEC------------
Confidence 5789999999999999999999999999999999999999999999875321000000 001111
Q ss_pred ccCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhc
Q 010665 83 ASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNY 153 (504)
Q Consensus 83 ~s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl 153 (504)
+++.....+.+. ..++..+.||++|+++|.+|+.|+ ++|++.+|+.+.....++++++ +|.||
T Consensus 141 -------~~~~~~~~~~~~-~~~~~~~~Lt~~E~~ll~~l~~~~g~v~sr~~l~~~vw~~~~~~~~~~~~~~i~rlR~kl 212 (237)
T PRK11173 141 -------GWELDINSRSLI-SPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHF 212 (237)
T ss_pred -------CEEEecccceEE-ecCCeEEeCCHHHHHHHHHHHhCCCccCcHHHHHHHhcCcCCCCCCccHHHHHHHHHHHh
Confidence 122222333332 157788999999999999999998 8999999998877788999998 68888
Q ss_pred CCC-----CCCCcccccCc
Q 010665 154 GQK-----SLVPVTEAQGS 167 (504)
Q Consensus 154 ~k~-----~~~~~~~~~~~ 167 (504)
+.. .|......||.
T Consensus 213 ~~~~~~~~~I~tv~g~GY~ 231 (237)
T PRK11173 213 ESTPDTPEIIATIHGEGYR 231 (237)
T ss_pred ccCCCCCCcEEEecCCceE
Confidence 632 35555556654
No 10
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.39 E-value=2.7e-12 Score=121.20 Aligned_cols=135 Identities=19% Similarity=0.309 Sum_probs=101.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
..+|||++++..+.....+++..||++||.||++..+|..+|+.++++.... ..........++
T Consensus 70 ~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~-----~~~~~~~~~~~~----------- 133 (223)
T PRK11517 70 KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL-----NSTLEISGLRMD----------- 133 (223)
T ss_pred CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccCc-----CCeEEECCEEEE-----------
Confidence 4689999999999999999999999999999999999999999988754321 011111111111
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC--
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ-- 155 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k-- 155 (504)
...+.+. ..+..+.||++|++||.+|++++ ++|.+.+|+.......++++.| ++.||+.
T Consensus 134 --------~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~g~~~s~~~i~~~~w~~~~~~~~~tv~~~i~rlr~Kl~~~~ 203 (223)
T PRK11517 134 --------SVSQSVS--RDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPF 203 (223)
T ss_pred --------cCCCEEE--ECCEEEeCCHHHHHHHHHHHhCCCccCCHHHHHHHhcCCCCCCCcCCHHHHHHHHHHhhcCCC
Confidence 1123334 45677789999999999999985 8999999999877889999999 6778853
Q ss_pred --CCCCCcccccCc
Q 010665 156 --KSLVPVTEAQGS 167 (504)
Q Consensus 156 --~~~~~~~~~~~~ 167 (504)
..|......||.
T Consensus 204 ~~~~i~tv~g~GY~ 217 (223)
T PRK11517 204 PEKLIATIRGMGYS 217 (223)
T ss_pred CCCeEEEeCCCceE
Confidence 235555555654
No 11
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.39 E-value=2.8e-12 Score=120.54 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=105.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||+++++.+......++..||++||.||++.++|..+|+.++++.... ...........+
T Consensus 69 ~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~----~~~~~~~~~~~~---------- 134 (222)
T PRK10643 69 KKYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQGQ----GENELQVGNLTL---------- 134 (222)
T ss_pred cCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhccc----cCCceEECCEEE----------
Confidence 346799999999999999999999999999999999999999999988765332 011111111111
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
....+.+. ..+..+.||++|+++|.+|+.+. +++.+.+|+.+.....++++.| ++.||+.
T Consensus 135 ---------~~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~~~i~~lr~Kl~~ 203 (222)
T PRK10643 135 ---------NLGRQQVW--LDGQELILTPKEFALLSRLMLKAGSPVHREILYQDIYNWDDEPSSNTLEVHIHNLRDKVGK 203 (222)
T ss_pred ---------EcCCCEEE--ECCEEEecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCcCCHHHHHHHHHHhCCC
Confidence 11122333 45566789999999999998654 7888999998878889999999 6889888
Q ss_pred CCCCCcccccCcc
Q 010665 156 KSLVPVTEAQGSE 168 (504)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (504)
+.+......||.=
T Consensus 204 ~~i~t~~g~GY~~ 216 (222)
T PRK10643 204 DRIRTVRGFGYML 216 (222)
T ss_pred CcEEEeccceeEe
Confidence 7788888888754
No 12
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.38 E-value=4.3e-12 Score=118.94 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=101.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++++..+......++..||++||.||++..+|..+|+.++++..... ..........++
T Consensus 67 ~~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~~~~~--------- 133 (218)
T TIGR01387 67 SGKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLN----STVLEIADLRMD--------- 133 (218)
T ss_pred cCCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccCC----CCeEEECCEEEE---------
Confidence 3578999999999999999999999999999999999999999999887653320 011111111111
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
...+.+. ..+..+.||++|+++|.+|++++ ++|...+|+.......++++.| ++.||..
T Consensus 134 ----------~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~~~~~sr~~i~~~~~~~~~~~~~~~~~~~i~~lr~kl~~ 201 (218)
T TIGR01387 134 ----------SVRHRVS--RGNIRITLTRKEFQLLWLLMRRTGEVLPRTVIASLVWGMNFDSDTNVVDVAIRRLRAKVDD 201 (218)
T ss_pred ----------cccCEEE--ECCEEEeCCHHHHHHHHHHHhCCCeeEcHHHHHHHhcCCCCCCCcCCHHHHHHHHHHhhcC
Confidence 1123333 45667789999999999999985 8999999998877888999999 5677743
Q ss_pred ----CCCCCcccccC
Q 010665 156 ----KSLVPVTEAQG 166 (504)
Q Consensus 156 ----~~~~~~~~~~~ 166 (504)
..+......||
T Consensus 202 ~~~~~~i~t~~g~GY 216 (218)
T TIGR01387 202 PFEEKLIHTIRGMGY 216 (218)
T ss_pred CCCCCcEEEeCCcce
Confidence 22444555554
No 13
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.37 E-value=4.5e-12 Score=120.91 Aligned_cols=138 Identities=17% Similarity=0.263 Sum_probs=101.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++++..+.....+++..||++||.||++..+|..+|+.++++.... ........+.
T Consensus 74 ~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~---~~~~~~~~~~-------------- 136 (229)
T PRK10161 74 TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPM---AVEEVIEMQG-------------- 136 (229)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccccc---CcCceeEECC--------------
Confidence 36899999999999999999999999999999999999999999998763211 0000111111
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
++.....+.+. ..+..+.||++|++||.+|++++ ++|...+|+.......++++.| ++.||+..
T Consensus 137 -----~~~~~~~~~~~--~~~~~~~Lt~~E~~ll~~l~~~~~~~~s~~~l~~~~~~~~~~~~~~tv~~~i~rlr~Kl~~~ 209 (229)
T PRK10161 137 -----LSLDPTSHRVM--AGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 209 (229)
T ss_pred -----EEEEcCcCEEE--ECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhccC
Confidence 11111233444 45566789999999999999986 8999999998877788999999 67788642
Q ss_pred ----CCCCcccccCc
Q 010665 157 ----SLVPVTEAQGS 167 (504)
Q Consensus 157 ----~~~~~~~~~~~ 167 (504)
.|......||.
T Consensus 210 ~~~~~i~tv~g~GY~ 224 (229)
T PRK10161 210 GHDRMVQTVRGTGYR 224 (229)
T ss_pred CCCCcEEEcCCcceE
Confidence 24445555553
No 14
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.36 E-value=5.8e-12 Score=118.41 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=105.3
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|+..+......++..||++||.||++.++|..+|+.++++.... .......+...++..
T Consensus 69 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~------- 137 (219)
T PRK10336 69 KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ----ASNELRHGNVMLDPG------- 137 (219)
T ss_pred cCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccC----CCCceeECCEEEEcc-------
Confidence 357899999999999999999999999999999999999999999988764321 000111111111110
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
..... ..+..+.||++|+++|.+|++++ ++|.+.+|+.......++++.| ++.||+.
T Consensus 138 ------------~~~~~--~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~l~~~~~~~~~~tv~~~i~~lr~Kl~~ 203 (219)
T PRK10336 138 ------------KRIAT--LAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGS 203 (219)
T ss_pred ------------cCEEE--ECCEEEecCHHHHHHHHHHHhCCCccCcHHHHHHHhcCCCCCCCccCHHHHHHHHHHhcCC
Confidence 11122 34556789999999999999874 8999999998888889999999 6889988
Q ss_pred CCCCCcccccCc
Q 010665 156 KSLVPVTEAQGS 167 (504)
Q Consensus 156 ~~~~~~~~~~~~ 167 (504)
+.+......||.
T Consensus 204 ~~i~t~~g~GY~ 215 (219)
T PRK10336 204 DFIRTVHGIGYT 215 (219)
T ss_pred CcEEEecCcceE
Confidence 888888888874
No 15
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.35 E-value=7e-12 Score=121.53 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=101.9
Q ss_pred CCCcEEEEecC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 7 KNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 7 p~IPIIvLSa~-~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
..+|||++++. .+.....+++..||++||.||++..+|..+|+.++++..............++
T Consensus 71 ~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~~~~~~~~~~~~~~~~--------------- 135 (241)
T PRK13856 71 SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRPNVVRTKDRRSFCFA--------------- 135 (241)
T ss_pred CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhcccccccccccceecC---------------
Confidence 46899999985 46777889999999999999999999999999998764321000000011111
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
.++.....+.+. ...+..+.||++||++|.+|++++ ++|+..+|+.+.....+++++| +|.||+++
T Consensus 136 ----~~~~~~~~~~~~-~~~~~~i~Lt~~E~~lL~~l~~~~~~v~sr~~l~~~~~~~~~~~~~~~l~~~i~rLR~Kl~~~ 210 (241)
T PRK13856 136 ----DWTLNLRQRRLI-SEAGGEVKLTAGEFNLLVAFLEKPRDVLSREQLLIASRVREEEVYDRSIDVLILRLRRKLEQD 210 (241)
T ss_pred ----ceEEehhhCEEE-eCCCcEeecCHHHHHHHHHHHhCCCCccCHHHHHHHhcCcCCCCCCccHhHHHHHHHHhcccC
Confidence 122222233332 135677899999999999999887 8999999998877788999999 68899753
Q ss_pred -----CCCCcccccCcc
Q 010665 157 -----SLVPVTEAQGSE 168 (504)
Q Consensus 157 -----~~~~~~~~~~~~ 168 (504)
.|......||.=
T Consensus 211 ~~~~~~I~tvrg~GY~l 227 (241)
T PRK13856 211 PANPQLIKTARGAGYFF 227 (241)
T ss_pred CCCCCeEEEeCCcccEE
Confidence 255556666554
No 16
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.30 E-value=1.6e-11 Score=115.88 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++++..+......++..||++||.||++..+|..+|+.++++..... . ...........
T Consensus 73 ~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~-~-~~~~~~~~~~~------------ 138 (228)
T PRK11083 73 HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFA-A-PSPVIRIGHFE------------ 138 (228)
T ss_pred CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcccccc-C-CCceeEECCEE------------
Confidence 478999999999999999999999999999999999999999999887643210 0 00000001111
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
.......+. ..+....||++|++||.+|++++ ++|.+.+|..+.....+|++.| ++.||+.
T Consensus 139 -------~~~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~l~~~~~~~~~~tv~~~i~~l~~Kl~~ 208 (228)
T PRK11083 139 -------LDEPAARIS--YFGTPLTLTRYEFLLLKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRA 208 (228)
T ss_pred -------EecCccEEE--ECCEEeecCHHHHHHHHHHHhCCCceECHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhcc
Confidence 011122233 34566789999999999999974 8999999998877788999999 5777753
No 17
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.26 E-value=4.9e-11 Score=113.33 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=94.6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCCCC
Q 010665 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSS 88 (504)
Q Consensus 9 IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~~~ 88 (504)
+|||++|+..+......+++.||++||.||++..+|..+|+.++++......... .......+..
T Consensus 72 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~------------ 136 (232)
T PRK10955 72 TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQN---NDNGSPTLEV------------ 136 (232)
T ss_pred CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcccccccccc---ccCCCceEEE------------
Confidence 8999999999999999999999999999999999999999999876543210000 0000000000
Q ss_pred CcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 89 GYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 89 ~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
+.+......+... ..+..+.||++|+++|.+|++++ ++|...+|+.......++|+.| ++.||+.
T Consensus 137 ~~~~~~~~~~~~~--~~~~~~~Lt~~E~~~l~~l~~~~~~v~sr~~l~~~~~~~~~~~~~~tv~~~i~~lr~Kl~~ 210 (232)
T PRK10955 137 DALSLNPGRQEAS--FDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPD 210 (232)
T ss_pred CCEEEecCCCEEE--ECCEEecCCHHHHHHHHHHHhCCCceEcHHHHHHHHhCCCCCCCCcCHHHHHHHHHHhccc
Confidence 0111111223333 45667789999999999999987 7999999999888888999999 6778864
No 18
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.26 E-value=4.8e-11 Score=112.22 Aligned_cols=126 Identities=18% Similarity=0.283 Sum_probs=94.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||+++++.+.....+++..||++||.||++.++|..+|+.++++.... ............+
T Consensus 74 ~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~---~~~~~~~~~~~~~----------- 139 (226)
T TIGR02154 74 TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQ---LSDEVIEVGDLSL----------- 139 (226)
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccccc---cccCceEECCEEE-----------
Confidence 46799999999999999999999999999999999999999999988764321 0000011111000
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
......+. ..+..+.||++|++||.+|++++ ++|.+.+|+.......++++.| ++.||+.
T Consensus 140 --------~~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~~~~~~~~~~~~tv~~~i~~l~~Kl~~ 208 (226)
T TIGR02154 140 --------DPVAHRVF--RGGQPLSLGPTEFRLLHFFMTHPERVYSREQLLDRVWGRDVYVEERTVDVHIRRLRKALNP 208 (226)
T ss_pred --------EcCccEEE--ECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHHHHhhcc
Confidence 11122222 34555789999999999999975 7999999999888899999999 5667653
No 19
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.24 E-value=5.9e-11 Score=112.84 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCC-Ccccccccccchhhccccccccc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSG-NETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~-~~~~~~~~~~~~l~~~a~~da~s 84 (504)
.+.+|||++|++.+......++.+||++||.||++..+|..+|+.++++....... ........+
T Consensus 72 ~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------- 137 (227)
T TIGR03787 72 SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAEALQKPQKQDDLITRG-------------- 137 (227)
T ss_pred CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhhccccccccceEEEC--------------
Confidence 46799999999999999999999999999999999999999999999875432100 000000000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
.+........+. ..+..+.||++|++||.+|++++ ++|.+.+|. ....++|+.| ++.||+.
T Consensus 138 -----~~~~~~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~g~v~s~~~i~~~~~~---~~~~~tv~~~v~rlr~Kl~~ 207 (227)
T TIGR03787 138 -----PLTLDSDRMTVF--WQDQPIDLTVTEFWMVHALAKHPGHVKSRQQLMDAAKI---VVDDSTITSHIKRIRKKFQA 207 (227)
T ss_pred -----CEEEEcccCEEE--ECCEEecCCHHHHHHHHHHHhCCCccccHHHHHHHhhh---cCCccCHHHHHHHHHHHhcc
Confidence 111111123333 45556789999999999999964 889888874 3467899999 6778864
Q ss_pred -----CCCCCcccccCc
Q 010665 156 -----KSLVPVTEAQGS 167 (504)
Q Consensus 156 -----~~~~~~~~~~~~ 167 (504)
..|......||.
T Consensus 208 ~~~~~~~i~tv~g~GY~ 224 (227)
T TIGR03787 208 VDDNFDCIQTVYGMGYR 224 (227)
T ss_pred CCCCCCeEEEecceeeE
Confidence 235555556653
No 20
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.23 E-value=7.2e-11 Score=110.87 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=99.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||+++...+.....+++..|+++||.||+...+|..+++.++++.... ......+....+...
T Consensus 70 ~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~-------- 137 (221)
T PRK15479 70 GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQ----VQEVQQLGELIFHDE-------- 137 (221)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhccC----cCccEEECCEEEccC--------
Confidence 46799999999999999999999999999999999999999999888765332 001111111111000
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
. .+. ..+..+.||++|+++|.+|++++ ++|.+.+|+.+.....++++.| ++.||+..
T Consensus 138 -----------~-~~~--~~~~~~~Lt~~E~~il~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~tv~~~i~~ir~kl~~~ 203 (221)
T PRK15479 138 -----------G-YFL--LQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGS 203 (221)
T ss_pred -----------C-eEE--ECCEEEecCHHHHHHHHHHHhCCCCcCcHHHHHHHhcCCCCCCCcccHHHHHHHHHHhcCCC
Confidence 1 111 33455689999999999999864 8999999998877788999999 67777642
Q ss_pred --CCCCcccccCc
Q 010665 157 --SLVPVTEAQGS 167 (504)
Q Consensus 157 --~~~~~~~~~~~ 167 (504)
.|......||+
T Consensus 204 ~~~i~t~~~~Gy~ 216 (221)
T PRK15479 204 DVRITTLRGLGYV 216 (221)
T ss_pred CCcEEEecccceE
Confidence 25555566664
No 21
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.22 E-value=1.1e-10 Score=111.48 Aligned_cols=128 Identities=21% Similarity=0.331 Sum_probs=93.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCc---ccccccccchhhcccccccc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNE---TQDESVGQQKIEATSENDAA 83 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~---~~~~~~~~~~l~~~a~~da~ 83 (504)
+.+|||+++++.+......++..||++||.||++..+|..+|+.++++......... ..........
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 145 (240)
T CHL00148 76 SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRTNKKSFSSKIPNSSIIRIGFLK---------- 145 (240)
T ss_pred CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhccccccccccCCCceEEECCEE----------
Confidence 579999999999999999999999999999999999999999998876532100000 0000000000
Q ss_pred cCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCC--CCCcchhhH---hhhh
Q 010665 84 SNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQ--NDVKMQNHE---ARVN 152 (504)
Q Consensus 84 s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~--s~~~tvd~~---~~~k 152 (504)
.......+. ..+..+.||++|++||.+|++++ ++|.+.+|+.+.. ...++|+.| ++.|
T Consensus 146 ---------~~~~~~~~~--~~~~~~~Lt~~E~~il~~l~~~~~~~~s~~~i~~~l~~~~~~~~~~~~tv~~~i~~lr~K 214 (240)
T CHL00148 146 ---------IDLNKKQVY--KNNERIRLTGMEFSLLELLISKSGEIFSRATILKEVWGYTPERHIDTRVVDVHISRLRAK 214 (240)
T ss_pred ---------EEcCCCEEE--ECCEEEEcCHHHHHHHHHHHHCCCEEEcHHHHHHHhcCCCcccCCCcccHHHHHHHHHHH
Confidence 011123333 45566789999999999999875 8999999987654 678999999 6778
Q ss_pred cCC
Q 010665 153 YGQ 155 (504)
Q Consensus 153 l~k 155 (504)
|+.
T Consensus 215 L~~ 217 (240)
T CHL00148 215 LED 217 (240)
T ss_pred hcc
Confidence 864
No 22
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.08 E-value=1e-09 Score=104.80 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||+++...+......++..|+++||.||+...+|..+|+.++++..... . ...........++.
T Consensus 79 ~~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~--------- 147 (240)
T PRK10710 79 FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR-E-LQQQDAESPLIIDE--------- 147 (240)
T ss_pred cCCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccC-C-CccceEeCCEEEEc---------
Confidence 357899999999999999999999999999999999999999999887653320 0 00000011111100
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
...... ..+....||++|++||.+|++++ ++|.+.+|+.......++++.| ++.||+.
T Consensus 148 ----------~~~~~~--~~~~~~~Lt~~e~~il~~l~~~~~~~~s~~~i~~~~~~~~~~~~~~tv~~~i~~lr~kl~~ 214 (240)
T PRK10710 148 ----------SRFQAS--WRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLES 214 (240)
T ss_pred ----------CceEEE--ECCEEeecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCcCcCCCccCHHHHHHHHHHHhhc
Confidence 011122 33455679999999999999875 7999999999888889999999 6788864
No 23
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=98.95 E-value=1.2e-09 Score=104.25 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=80.5
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
....+||||||+|+|..+.++||+.||.|||.|||+..+|+..|+..+++......... .. ..
T Consensus 73 ~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~------~~----~~------- 135 (202)
T COG4566 73 RGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEAD------RQ----AA------- 135 (202)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHH------HH----HH-------
Confidence 45689999999999999999999999999999999999999999999987644310000 00 00
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE 148 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~ 148 (504)
.......||+||.++|..+++.. .+|...+ ....+||+.|
T Consensus 136 -------------------~~~~l~tLT~RERqVl~~vV~G~~NKqIA~dL-----giS~rTVe~H 177 (202)
T COG4566 136 -------------------IRARLATLTPRERQVLDLVVRGLMNKQIAFDL-----GISERTVELH 177 (202)
T ss_pred -------------------HHHHHHhcCHHHHHHHHHHHcCcccHHHHHHc-----CCchhhHHHH
Confidence 11223479999999999999776 6777665 5678899999
No 24
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=98.72 E-value=5.4e-08 Score=90.61 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=84.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++++..+......++..|+++|+.||++.++|..+|+.++++.... ... .+...
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~----~~~-------~~~~~------- 135 (210)
T PRK09935 74 IQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFF----PSE-------TLNYI------- 135 (210)
T ss_pred hCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCcee----CHH-------HHHHH-------
Confidence 356799999999999999999999999999999999999999999888764322 000 01000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
....... .......||++|+++|.+++++. ++|.+.+| ...+||+.| ++.||+
T Consensus 136 ----------~~~~~~~--~~~~~~~lt~re~~vl~~l~~g~s~~eIa~~l~-----~s~~tv~~~~~~~~~kl~ 193 (210)
T PRK09935 136 ----------KSNKCST--NSSTDTVLSNREVTILRYLVSGLSNKEIADQLL-----LSNKTVSAHKSNIYGKLG 193 (210)
T ss_pred ----------Hhccccc--CccccccCCHHHHHHHHHHHcCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHcC
Confidence 0000111 22345679999999999998887 89999998 456899998 455554
No 25
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=98.65 E-value=1.6e-07 Score=87.52 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=83.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++++..+......++..|+++||.||++.++|..+|+.++++.... ...+...
T Consensus 70 ~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~------------~~~~~~~------- 130 (204)
T PRK09958 70 RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF------------PFSLNRF------- 130 (204)
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCccc------------CHHHHHH-------
Confidence 346789999999999999999999999999999999999999999998754322 0001100
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
.+.... .......||++|+++|.+|+++. ++|.+.+| ...+||+.| ++.||+-
T Consensus 131 ------------~~~~~~-~~~~~~~lt~~E~~vl~~l~~g~~~~~I~~~l~-----~s~~tv~~~~~~l~~Kl~~ 188 (204)
T PRK09958 131 ------------VGSLTS-DQQKLDSLSKQEISVMRYILDGKDNNDIAEKMF-----ISNKTVSTYKSRLMEKLEC 188 (204)
T ss_pred ------------HHhccC-CCcccccCCHHHHHHHHHHHcCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHcCC
Confidence 000000 11123469999999999999887 89988874 567889988 5666653
No 26
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=98.63 E-value=1.6e-07 Score=91.43 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=79.6
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDA 82 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL-~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da 82 (504)
...|.+|||++|++++.....+++ +.||.+||.||++.++|+.+|+.++++..... +.. ... . .
T Consensus 64 ~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~----~~~---~~~-~--~----- 128 (207)
T PRK11475 64 IKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQAT----DRL---NNQ-W--Y----- 128 (207)
T ss_pred HHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccC----HHH---HHH-h--h-----
Confidence 357899999999998887777766 79999999999999999999999998754431 000 000 0 0
Q ss_pred ccCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhh
Q 010665 83 ASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEAR 150 (504)
Q Consensus 83 ~s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~ 150 (504)
. .....||+||.+||.++++.. .+|.+.+ ....+||+.|..
T Consensus 129 ---------------------~-~~~~~LT~RE~eVL~ll~~G~snkeIA~~L-----~iS~~TV~~h~~ 171 (207)
T PRK11475 129 ---------------------I-NQSRMLSPTEREILRFMSRGYSMPQIAEQL-----ERNIKTIRAHKF 171 (207)
T ss_pred ---------------------c-cCcCCCCHHHHHHHHHHHCCCCHHHHHHHH-----CCCHHHHHHHHH
Confidence 0 002359999999999999887 8999887 566789999943
No 27
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=98.55 E-value=5.3e-07 Score=83.54 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=80.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
+.+|||+++...+......++..||++||.||++.++|..+|+.++++.... . ... ....
T Consensus 71 ~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~----~------~~~-~~~~--------- 130 (196)
T PRK10360 71 KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYL----T------PDI-AIKL--------- 130 (196)
T ss_pred cCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeee----C------HHH-HHHH---------
Confidence 4689999999999999999999999999999999999999999988753221 0 000 0000
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
..+....||++|++++.+|+++. ++|.+.++ ...++++.| ++.||+
T Consensus 131 -----------------~~~~~~~Lt~~E~~il~~l~~g~~~~~Ia~~l~-----~s~~tv~~~~~~l~~Kl~ 181 (196)
T PRK10360 131 -----------------ASGRQDPLTKRERQVAEKLAQGMAVKEIAAELG-----LSPKTVHVHRANLMEKLG 181 (196)
T ss_pred -----------------HhccccCCCHHHHHHHHHHHCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhC
Confidence 01123469999999999999886 88888873 456888888 455554
No 28
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.54 E-value=4.5e-07 Score=88.46 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=84.6
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAA 83 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~ 83 (504)
...|+++||++|.+++...+.++++.||++|+.|..++++|..+|+.++.+..+.. +.. ........
T Consensus 70 ~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~----~~~---~~~~~~~~------ 136 (211)
T COG2197 70 ARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLP----PDI---ARKLAGLL------ 136 (211)
T ss_pred HHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeC----HHH---HHHHHhhc------
Confidence 46788999999999999999999999999999999999999999999998775541 000 00000000
Q ss_pred cCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhhh
Q 010665 84 SNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEARV 151 (504)
Q Consensus 84 s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~~ 151 (504)
.... . .......||+||.+||.++++-. .+|...+ ....+||+.|++.
T Consensus 137 ------------~~~~-~--~~~~~~~LT~RE~eVL~lla~G~snkeIA~~L-----~iS~~TVk~h~~~ 186 (211)
T COG2197 137 ------------PSSS-A--EAPLAELLTPRELEVLRLLAEGLSNKEIAEEL-----NLSEKTVKTHVSN 186 (211)
T ss_pred ------------cccc-c--cccccCCCCHHHHHHHHHHHCCCCHHHHHHHH-----CCCHhHHHHHHHH
Confidence 0000 0 00000469999999999999887 7899888 5677899999544
No 29
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=98.51 E-value=3.2e-07 Score=88.02 Aligned_cols=110 Identities=8% Similarity=0.147 Sum_probs=81.3
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|.+.+......+++.||++||.||+..++|..+|+.++.+..... ... .. .+... .
T Consensus 77 ~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~----~~~---~~-~~~~~---~--- 142 (216)
T PRK10840 77 HFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTP----ESV---SR-LLEKI---S--- 142 (216)
T ss_pred HCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecC----HHH---HH-HHHHh---c---
Confidence 3578999999999999999999999999999999999999999999887654330 000 00 00000 0
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhhh
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEARV 151 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~~ 151 (504)
. .......||+||.++|.++++.. .+|.+.+ ....+||+.|.+.
T Consensus 143 ------------~------~~~~~~~Lt~rE~evl~~~~~G~s~~eIA~~l-----~iS~~TV~~h~~~ 188 (216)
T PRK10840 143 ------------A------GGYGDKRLSPKESEVLRLFAEGFLVTEIAKKL-----NRSIKTISSQKKS 188 (216)
T ss_pred ------------c------CCCccccCCHHHHHHHHHHHCCCCHHHHHHHH-----CCCHHHHHHHHHH
Confidence 0 00012359999999999999877 8899888 5667899999433
No 30
>PRK09483 response regulator; Provisional
Probab=98.47 E-value=6.8e-07 Score=84.16 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=82.3
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||+++.+.+......++..|+++||.||++.++|..+|+.++++..... .. ......... .
T Consensus 72 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~----~~---~~~~~~~~~---~--- 138 (217)
T PRK09483 72 YTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIA----SD---IAQQMALSQ---I--- 138 (217)
T ss_pred HCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccC----HH---HHHHHHHhh---c---
Confidence 4678999999999999999999999999999999999999999999987654320 00 000000000 0
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
..........||++|.++|.++++.. .+|.+.+ ....+||+.| +..||+
T Consensus 139 ----------------~~~~~~~~~~Lt~rE~~vl~~~~~G~~~~~Ia~~l-----~is~~TV~~~~~~i~~Kl~ 192 (217)
T PRK09483 139 ----------------EPATENPFASLSERELQIMLMITKGQKVNEISEQL-----NLSPKTVNSYRYRMFSKLN 192 (217)
T ss_pred ----------------ccCCCccccccCHHHHHHHHHHHCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHcC
Confidence 00011122469999999999988766 7888776 4567889888 455554
No 31
>PRK10403 transcriptional regulator NarP; Provisional
Probab=98.38 E-value=1.9e-06 Score=79.95 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=82.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|+|+++...+......++..|+++||.||++..+|..+|+.++.+.... .. .... .+...
T Consensus 77 ~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~----~~---~~~~-~~~~~------- 141 (215)
T PRK10403 77 DGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVF----SE---RVNQ-YLRER------- 141 (215)
T ss_pred hCCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeec----CH---HHHH-HHHhh-------
Confidence 346789999999999999999999999999999999999999999887653221 00 0000 00000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
............||++|+++|.+++++. .+|...+| ...+||+.| ++.||+-
T Consensus 142 --------------~~~~~~~~~~~~Lt~~e~~vl~~~~~g~s~~~ia~~l~-----~s~~tv~~~~~~i~~kl~~ 198 (215)
T PRK10403 142 --------------EMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLN-----ISEQTVKVHIRNLLRKLNV 198 (215)
T ss_pred --------------hccCCCCcccccCCHHHHHHHHHHHCCCCHHHHHHHcC-----CCHHHHHHHHHHHHHHcCC
Confidence 0000011223469999999999998886 89999885 467889988 5555543
No 32
>PRK10651 transcriptional regulator NarL; Provisional
Probab=98.26 E-value=3.7e-06 Score=78.25 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||+++...+......++..|+++||.||++..+|...|+.++++..... . ............ +
T Consensus 78 ~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~----~---~~~~~~~~~~~~-~---- 145 (216)
T PRK10651 78 SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLS----E---ALTPVLAASLRA-N---- 145 (216)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccC----H---HHHHHHHHHhhc-c----
Confidence 467899999999999999999999999999999999999999999987543220 0 000000000000 0
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhhh
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEARV 151 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~~ 151 (504)
.. ........||++|+++|.+++++. .+|...+ ....+||+.|++.
T Consensus 146 -----------~~----~~~~~~~~Lt~rE~~vl~~l~~g~~~~~ia~~l-----~is~~tV~~~~~~ 193 (216)
T PRK10651 146 -----------RA----TTERDVNQLTPRERDILKLIAQGLPNKMIARRL-----DITESTVKVHVKH 193 (216)
T ss_pred -----------cC----ccccccccCCHHHHHHHHHHHcCCCHHHHHHHc-----CCCHHHHHHHHHH
Confidence 00 011122359999999999999875 6777654 4567899998433
No 33
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=98.24 E-value=5.9e-06 Score=75.86 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=80.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++++..+......++..|+++||.||+...+|..+|+.++++.... .. ..........
T Consensus 75 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~----~~---~~~~~~~~~~-------- 139 (211)
T PRK15369 75 WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYI----DP---ALNREAILAL-------- 139 (211)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCcee----CH---HHHHHHHHHh--------
Confidence 46789999999999999999999999999999999999999999887653221 00 0000000000
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh---hhhcC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA---RVNYG 154 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~---~~kl~ 154 (504)
..........||++|.++|.+++++. .+|.+.+ ....+||+.|+ ..||+
T Consensus 140 ---------------~~~~~~~~~~lt~~e~~vl~l~~~g~~~~~Ia~~l-----~~s~~tv~~~~~~~~~kl~ 193 (211)
T PRK15369 140 ---------------LNADDTNPPLLTPRERQILKLITEGYTNRDIAEQL-----SISIKTVETHRLNMMRKLD 193 (211)
T ss_pred ---------------ccCCCCcccCCCHHHHHHHHHHHCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhC
Confidence 00011233569999999999999876 7888776 45678888884 44544
No 34
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.01 E-value=8.1e-06 Score=88.25 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+++|||+||++.+.+++++|++.||.|||.|||+++.|+..|++++.....
T Consensus 73 ~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 73 RDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred hCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 45899999999999999999999999999999999999999999999976543
No 35
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=97.91 E-value=5e-05 Score=74.50 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=76.2
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMM--RGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSEND 81 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~--~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~d 81 (504)
...|.++||++|++++. ...++. .||.+||.|+.+.++|+.+|+.++++..+.. +. +....+... ..
T Consensus 77 ~~~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~----~~---~~~~l~~~~--~~ 145 (216)
T PRK10100 77 RKNNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFT----QK---LASYLITHS--GN 145 (216)
T ss_pred HhCCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccC----HH---HHHHHHHhh--cc
Confidence 34688999999999874 455566 4999999999999999999999998765541 10 000000000 00
Q ss_pred cccCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhh
Q 010665 82 AASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEAR 150 (504)
Q Consensus 82 a~s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~ 150 (504)
... .......||++|.++|.++++.. .||.+.+ ....+||+.|..
T Consensus 146 ---------------~~~----~~~~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L-----~iS~~TVk~~~~ 192 (216)
T PRK10100 146 ---------------YRY----NSTESALLTHREKEILNKLRIGASNNEIARSL-----FISENTVKTHLY 192 (216)
T ss_pred ---------------ccc----CCCccCCCCHHHHHHHHHHHcCCCHHHHHHHh-----CCCHHHHHHHHH
Confidence 000 00012359999999999999877 8888887 566788888843
No 36
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.90 E-value=1.2e-05 Score=86.30 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=64.9
Q ss_pred CcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccc
Q 010665 3 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDA 82 (504)
Q Consensus 3 r~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da 82 (504)
......+|||++++.++.....+|++.|++|||+||+...+|..+++.++++.... ..+......+...+
T Consensus 201 ~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~------~~L~~~~~~~~~l~---- 270 (435)
T COG3706 201 LERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE------RQLRESLERLQELA---- 270 (435)
T ss_pred ccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHhh----
Confidence 34567899999999999999999999999999999999999999999999876642 01111111111111
Q ss_pred ccCCCCCcchhccccceeee
Q 010665 83 ASNHSSGYMACIQSKGEFIE 102 (504)
Q Consensus 83 ~s~~~~~~lT~l~n~r~v~d 102 (504)
..|.||++.|++.+.+
T Consensus 271 ----~~D~LTGL~NRR~~~~ 286 (435)
T COG3706 271 ----LVDGLTGLFNRRYFDE 286 (435)
T ss_pred ----ccccccCcccHHHHHH
Confidence 2358999999988763
No 37
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=97.82 E-value=4e-05 Score=64.82 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=41.7
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 49 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~ 49 (504)
.+.+|||++|...+.....++++.|+++||.||++.++|..+|+
T Consensus 69 ~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 47899999999999999999999999999999999999999885
No 38
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=97.70 E-value=0.0002 Score=70.00 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=46.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|+..+.....+++..|+++||.||++.++|..+|..++.+.
T Consensus 74 ~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 74 AGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred hCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999998876543
No 39
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=97.68 E-value=0.00015 Score=70.43 Aligned_cols=99 Identities=9% Similarity=0.086 Sum_probs=74.0
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAAD-YLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDA 82 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdD-YLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da 82 (504)
...|.++||++|++++..... ++..|+.. |+.|+.++++|..+|+.++.+..... .. .
T Consensus 73 ~~~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~----------------~~---~- 131 (207)
T PRK15411 73 NQHPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTIT----------------SF---L- 131 (207)
T ss_pred HHCCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccC----------------cc---c-
Confidence 356789999999998876543 66666665 88999999999999999877544320 00 0
Q ss_pred ccCCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhh
Q 010665 83 ASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEAR 150 (504)
Q Consensus 83 ~s~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~ 150 (504)
. . ....||++|.++|.++++-. .||.+.+ ....+||+.|.+
T Consensus 132 --------------~-------~-~~~~LT~RE~eVL~lla~G~snkeIA~~L-----~iS~~TVk~h~~ 174 (207)
T PRK15411 132 --------------N-------L-PTLSLSRTESSMLRMWMAGQGTIQISDQM-----NIKAKTVSSHKG 174 (207)
T ss_pred --------------c-------C-CcccCCHHHHHHHHHHHcCCCHHHHHHHc-----CCCHHHHHHHHH
Confidence 0 0 01249999999999999887 8999887 577889999843
No 40
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=97.67 E-value=5.8e-05 Score=76.85 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=80.8
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAA 83 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~ 83 (504)
...+.+|||++|+|.+. ...++...++|||+||+..+.|-.+|.+++++......+..... +
T Consensus 68 ~i~~~v~iifIssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~-------i--------- 129 (361)
T COG3947 68 DIESAVPIIFISSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQ-------I--------- 129 (361)
T ss_pred HhhccCcEEEEecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhccccccchhccCee-------e---------
Confidence 45688999999999877 45567777799999999999999999988866544311111000 0
Q ss_pred cCCCCCcchhccccceeeecCCccccc-CCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH-----hhh
Q 010665 84 SNHSSGYMACIQSKGEFIEKGSDEQSS-CTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE-----ARV 151 (504)
Q Consensus 84 s~~~~~~lT~l~n~r~v~d~~sg~q~s-LTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~-----~~~ 151 (504)
.|+.-.... ...+.+++ .|++..|++.+|++|. .+++..+|.+..... .+...| +|.
T Consensus 130 --------scfgg~ev~--~rqg~~vkWis~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kk-a~s~lhTtvyqlRK 198 (361)
T COG3947 130 --------SCFGGTEVV--LRQGQQVKWISRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKK-ASSLLHTTVYQLRK 198 (361)
T ss_pred --------Eeccceeee--ccCCceeeehhhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhh-HHHHHHHHHHHHHH
Confidence 011100011 13455554 5799999999999987 799999999864333 223333 666
Q ss_pred hcC
Q 010665 152 NYG 154 (504)
Q Consensus 152 kl~ 154 (504)
+|.
T Consensus 199 aLs 201 (361)
T COG3947 199 ALS 201 (361)
T ss_pred Hhc
Confidence 654
No 41
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=97.55 E-value=0.00019 Score=65.46 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||+++...+......++..|+.+|+.||+...+|..+++.++.+..... .. ......
T Consensus 72 ~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~~~~~-----~~-----~~~~~~------- 134 (202)
T PRK09390 72 RGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQAPEAA-----KS-----EAVAAD------- 134 (202)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhhhhcc-----cc-----hhHHHH-------
Confidence 3578999999999999999999999999999999999999999988876532210 00 000000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
.......|+++|.+++.+++... .+|...+ ....++++.| ++.||+.
T Consensus 135 -------------------~~~~~~~l~~~e~~vl~~~~~~~~~~~ia~~l-----~~s~~tv~~~~~~~~~kl~~ 186 (202)
T PRK09390 135 -------------------IRARIASLSERERQVMDGLVAGLSNKVIARDL-----DISPRTVEVYRANVMTKMQA 186 (202)
T ss_pred -------------------HHHHHHhhhhhHHHHHHHHHccCchHHHHHHc-----CCCHHHHHHHHHHHHHHHcc
Confidence 11123468999999999877644 4555442 3456788877 4555543
No 42
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=97.46 E-value=0.00014 Score=71.15 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=48.6
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
.....+-|||+|+-.+.+.+.+||+.||.|||+|||.++.|..+|....++....
T Consensus 70 ~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 70 SQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred hcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999998877665543
No 43
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=97.45 E-value=0.00037 Score=73.60 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=54.7
Q ss_pred cccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC-CCCCCcccc
Q 010665 95 QSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ-KSLVPVTEA 164 (504)
Q Consensus 95 ~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k-~~~~~~~~~ 164 (504)
.+.+.++ .++..+.||++|+.||.+|++|+ ++|++.+|+.+. ..++++.+ +|.||+. ..|......
T Consensus 293 ~~~~~l~--~~~~~i~Lt~~E~~lL~~L~~~~~~vvsr~~L~~~vw~~~~--~~~~l~~~I~rLRkkl~~~~~I~tv~g~ 368 (381)
T PRK07239 293 IRGHAVV--VDGEVKPLSPAPMALLRALAARPGRVVSREDLLAALPGGGT--DEHAVETAVARLRTALGDPKLVQTVVKR 368 (381)
T ss_pred CCCCEEE--ECCEEEEcCHHHHHHHHHHHhCCCceEeHHHHHHHhcCCCC--CccHHHHHHHHHHHhcCCCCeEEEeCCc
Confidence 3456677 67888999999999999999997 899999998873 77889988 6888863 235555566
Q ss_pred cCcc
Q 010665 165 QGSE 168 (504)
Q Consensus 165 ~~~~ 168 (504)
||+=
T Consensus 369 GY~l 372 (381)
T PRK07239 369 GYRL 372 (381)
T ss_pred eeEE
Confidence 6543
No 44
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=97.31 E-value=0.00051 Score=66.69 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=47.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|++.+...+.++++.||++||.||++.++|...|+.++.+...
T Consensus 76 ~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 76 HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999998766543
No 45
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=97.30 E-value=0.0002 Score=57.86 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=44.4
Q ss_pred cccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 106 DEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 106 g~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
|+.+.||++|+.||.+|+.++ ++|++.+|+.......++++.+ +|.+|+..
T Consensus 1 G~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~~ 60 (77)
T PF00486_consen 1 GQPVKLTPKEFRLLELLLRNPGRVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLEDA 60 (77)
T ss_dssp TEEEESSHHHHHHHHHHHHTTTSEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHSS
T ss_pred CcEEecCHHHHHHHHHHHhCCCCCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhhc
Confidence 456789999999999999886 8999999999887888888888 68887773
No 46
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=97.29 E-value=0.00031 Score=58.82 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=48.2
Q ss_pred cccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 95 QSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 95 ~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
...+.+. .++..+.||++|++||.+|++++ ++|++.+|+.......++++.+ +|.+|++
T Consensus 10 ~~~~~l~--~~~~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 10 PARREVT--RDGEPVELTPKEFELLELLARNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred hhhCEEE--ECCEEEEeCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 3455666 67888999999999999999986 8999999987664567778877 6888765
No 47
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.0003 Score=76.38 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=49.0
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
+..|++-+||||++++.+++.+||..|+.|||.||++.++|...|.++.....
T Consensus 72 e~~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 72 EQSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred HhCCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999876653
No 48
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=97.18 E-value=0.00033 Score=65.31 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=42.6
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 49 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~ 49 (504)
+..++..|||+|++.+..+.++|++.||.+||.||-+.++++.++.
T Consensus 77 ~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 77 ERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred hcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 4567899999999999999999999999999999999999988774
No 49
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.17 E-value=0.00063 Score=72.72 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.+...+|++.||+|||.||++.++|..+|+.++...
T Consensus 70 ~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 70 IAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred hCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 467899999999999999999999999999999999999999998877543
No 50
>PRK10693 response regulator of RpoS; Provisional
Probab=97.13 E-value=0.00089 Score=68.65 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~-~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|+..+.+.+.++++.||+|||.||+ +.++|..+|..+++..
T Consensus 42 ~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 42 RGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred cCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 35679999999999999999999999999999999 5899999998877543
No 51
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=97.13 E-value=0.00049 Score=71.90 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=46.2
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
+.+..||||++|++.+.+...+|+..||+|||.||+++.+|..++...++.
T Consensus 85 p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~ 135 (360)
T COG3437 85 PSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQL 135 (360)
T ss_pred CcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999766533
No 52
>PRK09581 pleD response regulator PleD; Reviewed
Probab=97.10 E-value=0.0006 Score=71.41 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=46.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+.+|||++|++++.+...+|+..||+|||.||++.++|..+|...+++
T Consensus 225 ~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 225 RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999876654
No 53
>PLN03029 type-a response regulator protein; Provisional
Probab=96.95 E-value=0.0017 Score=63.57 Aligned_cols=49 Identities=35% Similarity=0.719 Sum_probs=43.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
...+|||+||+........+|+..|+++||.||+...+|...+.++++.
T Consensus 100 ~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 100 LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999998777766644
No 54
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=96.86 E-value=0.0044 Score=51.20 Aligned_cols=50 Identities=20% Similarity=0.465 Sum_probs=45.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|+|+++..........++..|+.+|+.||+...+|..+++.++++.
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 78 MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 35789999999988889999999999999999999999999999988754
No 55
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=96.61 E-value=0.0047 Score=60.96 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=43.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+|||++|+........+++..|+++||.||++.++|..+|+.++..
T Consensus 78 ~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 48999999999999999999999999999999999999999988754
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=96.53 E-value=0.0059 Score=63.96 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=45.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
+.+|||++++..+.....+++..|+++||.||++.++|..+|..+++..
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 75 THIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999998887643
No 57
>PRK11906 transcriptional regulator; Provisional
Probab=96.50 E-value=0.0032 Score=68.08 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=55.6
Q ss_pred ceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC----CCCCcccc
Q 010665 98 GEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK----SLVPVTEA 164 (504)
Q Consensus 98 r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~----~~~~~~~~ 164 (504)
+.+. .++..+.||++|++||.+|++|+ ++|++.||+. .....++++++ +|.||++. .|......
T Consensus 21 r~L~--~~g~~V~LTpkEf~LL~lLl~n~grVVSRdeLle~VWg~-~~vs~~tLdv~IsRLRKKL~~~~~~~~IkTVrGv 97 (458)
T PRK11906 21 GILT--QGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKN-IIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRK 97 (458)
T ss_pred CEEE--ECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCC-CCCCcCcHHHHHHHHHHhhcccCCCCcEEEeCCc
Confidence 3455 67888999999999999999987 8999999996 45678999998 68898753 46677777
Q ss_pred cCcc
Q 010665 165 QGSE 168 (504)
Q Consensus 165 ~~~~ 168 (504)
||.=
T Consensus 98 GYrL 101 (458)
T PRK11906 98 GYRF 101 (458)
T ss_pred cEEE
Confidence 8765
No 58
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.43 E-value=0.0047 Score=66.13 Aligned_cols=51 Identities=31% Similarity=0.444 Sum_probs=46.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....+++..|++|||.||++.++|...|+.++...
T Consensus 73 ~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 73 HETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 347899999999999999999999999999999999999999998776543
No 59
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.37 E-value=0.0034 Score=69.38 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=58.2
Q ss_pred ccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC------CCC
Q 010665 94 IQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ------KSL 158 (504)
Q Consensus 94 l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k------~~~ 158 (504)
....+.+. .+|..+.||++|++||.+|++|+ ++|++.||+... ...++++++ +|+||+. ..|
T Consensus 14 d~~~~~l~--~~g~~V~Lt~~E~~LL~~L~~n~g~vvSRdeLi~~VW~~~~-~~~~~l~~~I~rLRkkL~~~~~~~~~~I 90 (517)
T PRK10153 14 TPSENKIS--RQGREVTLEPRLIDLLVFFAQHSGEVLSRDELIDHVWDRAI-VTDHVVTQSISELRKSLKDGREDNPEYI 90 (517)
T ss_pred EcCCCEEE--ECCEEEEeCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCC-CCcccHHHHHHHHHHHhccccCCCCCeE
Confidence 34466677 67888999999999999999997 899999999764 578899998 6888864 236
Q ss_pred CCcccccCcch
Q 010665 159 VPVTEAQGSEV 169 (504)
Q Consensus 159 ~~~~~~~~~~~ 169 (504)
......||+=.
T Consensus 91 ~Tv~g~GYrl~ 101 (517)
T PRK10153 91 VTVPKRGYKLV 101 (517)
T ss_pred EEeCCcceEEe
Confidence 66677777653
No 60
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=96.36 E-value=0.005 Score=49.52 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.3
Q ss_pred ccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCC-CCCCcchhhH---hhhhcCC
Q 010665 107 EQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSL-QNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 107 ~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~-~s~~~tvd~~---~~~kl~k 155 (504)
..+.||++|+++|.+|+.++ ++|++.+|+... ....+++..+ +|.+|+.
T Consensus 2 ~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 2 EPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred CeEecCHHHHHHHHHHHhCCCCccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 45789999999999999886 899999998764 4456677777 6777754
No 61
>PRK15115 response regulator GlrR; Provisional
Probab=96.36 E-value=0.0047 Score=66.01 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=46.8
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....+++..||.+||.||++..+|..+|..+++..
T Consensus 74 ~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 74 VQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred cCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999999999999888643
No 62
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=96.34 E-value=0.011 Score=51.10 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=40.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHHh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWR 53 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~E-Ll~~I~~lLr 53 (504)
.+.+|||++|++.......+++..|+++||.||+...+ |..++...+.
T Consensus 77 ~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 77 GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 36788999999999988888899999999999977776 7777775554
No 63
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.33 E-value=0.007 Score=65.26 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=46.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....++++.|+.+||.||++.++|...|..++...
T Consensus 72 ~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 72 RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred hCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999887643
No 64
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.21 E-value=0.0085 Score=69.22 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=46.5
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....+|++.|+++||.||++..+|...|..++...
T Consensus 738 ~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 738 HNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 356899999999999999999999999999999999999999998887543
No 65
>PRK13435 response regulator; Provisional
Probab=96.19 E-value=0.0096 Score=52.99 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
+.+|||+++...+ ...++..|+++||.||++..+|...|++++.+...
T Consensus 77 ~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 77 GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 5789999998654 25678899999999999999999999999876544
No 66
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.16 E-value=0.0085 Score=64.36 Aligned_cols=51 Identities=27% Similarity=0.433 Sum_probs=46.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....+++..|+++||.||+..++|...|+.++...
T Consensus 67 ~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 67 RHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999887643
No 67
>PRK14084 two-component response regulator; Provisional
Probab=96.10 E-value=0.012 Score=57.25 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=41.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.++||++|++.+ ...++++.||.+||.||+..++|..+|+.++++.
T Consensus 72 ~~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 72 KEPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred CCCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 45678999998764 4678999999999999999999999999887654
No 68
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=96.08 E-value=0.014 Score=56.58 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+..|||++|++.+...+.+++++||..||+||++..-|+-.|.-...+.
T Consensus 74 ~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 74 ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 345789999999999999999999999999999999999998887766554
No 69
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.02 E-value=0.0063 Score=64.74 Aligned_cols=51 Identities=29% Similarity=0.529 Sum_probs=46.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....+++..|+.+||.||++..+|...|..++++.
T Consensus 74 ~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 74 LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred hCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999887653
No 70
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.95 E-value=0.015 Score=67.31 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=45.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+|||++|++.+.....+|++.|+++||.||++..+|..+|..+++.
T Consensus 764 ~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 764 DPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999887653
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=95.81 E-value=0.0086 Score=66.40 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=52.6
Q ss_pred CCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC----CCCCcccccCcc
Q 010665 104 GSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK----SLVPVTEAQGSE 168 (504)
Q Consensus 104 ~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~----~~~~~~~~~~~~ 168 (504)
.++..+.||++|++||.+|++|+ ++|++.||+.. ....++++++ +|.||+++ .|......||.=
T Consensus 29 ~~~~~v~Lt~~E~~lL~~L~~~~~~vvsr~~l~~~vW~~~-~~~~~~l~~~I~~LRkkl~~~~~~~~I~tv~g~GY~~ 105 (553)
T PRK12370 29 RSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDA-EVNEESLTRCIYALRRILSEDKEHRYIETLYGQGYRF 105 (553)
T ss_pred ECCEEEEcCHHHHHHHHHHHhCCCCcCcHHHHHHHhcCCC-CCCcchHHHHHHHHHHhhccCCCCCeEEEeCCeeEEE
Confidence 56788999999999999999997 89999999975 5678899999 68998754 355666677654
No 72
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.77 E-value=0.015 Score=67.58 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=47.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.......+++..|+++||.||++.++|...|..+++..
T Consensus 751 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 751 QYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred hCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999999999999999999999999988653
No 73
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=95.53 E-value=0.021 Score=44.55 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=40.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 51 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~l 51 (504)
.+.+|+|+++..........++..|+.+|+.||+...+|...+..+
T Consensus 67 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 4678999999888888889999999999999999999998888654
No 74
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.45 E-value=0.0084 Score=40.10 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcccch
Q 010665 439 SIQREAALNKFRLKRKDRCYDKKVRYE 465 (504)
Q Consensus 439 ~~~r~~~~~r~~~k~~~r~~~k~~ry~ 465 (504)
+..|.+.|+||.||||.|... +.-|.
T Consensus 1 P~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 1 PIARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp -----HHHHHHHHHH------------
T ss_pred CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 357999999999999999987 66664
No 75
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=95.45 E-value=0.027 Score=67.58 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=45.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+.+|||++|++.+.....++++.|+++||.||++.++|..+|+.++..
T Consensus 1027 ~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1027 QNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 45789999999999999999999999999999999999999999877643
No 76
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=95.41 E-value=0.035 Score=53.44 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=38.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+||++|++. +...++++.||.+||.||++.++|...|..+.+.
T Consensus 74 ~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 74 MPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 34688888876 4578999999999999999999999999888754
No 77
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.35 E-value=0.03 Score=65.35 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=44.2
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 9 IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
+|||++|++.......+++..|+++||.||++..+|...|..++...
T Consensus 778 ~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 824 (968)
T TIGR02956 778 VKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAGG 824 (968)
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999887543
No 78
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.17 E-value=0.025 Score=65.70 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=46.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++++........+++..| ++||.||++..+|..+|+.++++.
T Consensus 766 ~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 766 AAPTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred hCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 45789999999999999999999999 999999999999999999998754
No 79
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=95.04 E-value=0.025 Score=52.73 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=53.2
Q ss_pred cceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCCC-----CCCcc
Q 010665 97 KGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQKS-----LVPVT 162 (504)
Q Consensus 97 ~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~~-----~~~~~ 162 (504)
.+.+. .++..+.|+++++.+|.+|++++ ++|++.||+........ +.++ +|..|++.- +....
T Consensus 20 ~~~L~--r~~~~v~l~~~~~~lL~~L~e~~geVvsk~eL~~~VW~~~~v~~~~-Ltq~I~~LRr~L~d~~~~~~~I~TvP 96 (148)
T COG3710 20 LRSLL--RGDEVVKLGPRELKLLSLLLERAGEVVSKDELLDAVWPGRIVTVNT-LTQAISALRRALRDIGDGHRLIATVP 96 (148)
T ss_pred cceEE--ECCeEEEecHHHHHHHHHHHhccCceecHHHHHHHhCCCceEccCh-HHHHHHHHHHHHhccCCcceEEEEeC
Confidence 45555 66789999999999999999987 89999999998766655 6666 566665532 55556
Q ss_pred cccCcchh
Q 010665 163 EAQGSEVA 170 (504)
Q Consensus 163 ~~~~~~~~ 170 (504)
..||+=.+
T Consensus 97 rrGyk~~~ 104 (148)
T COG3710 97 RRGYKFTA 104 (148)
T ss_pred CcceEEec
Confidence 66666544
No 80
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=94.24 E-value=0.087 Score=54.58 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=37.6
Q ss_pred CCcEEEEecCCC--HHHHHHHHHcCCCEEEECCC---------CHHHHHHHHHHHHh
Q 010665 8 NIPVIMMSSQDS--VSTVYKCMMRGAADYLVKPV---------RRNELRNLWQHVWR 53 (504)
Q Consensus 8 ~IPIIvLSa~~d--~~~~~eAL~~GAdDYLvKP~---------~~~ELl~~I~~lLr 53 (504)
.+|||++++..+ .....++++.|+++||.||+ ..++|+.+|+.+.+
T Consensus 73 ~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 73 PCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 489999998754 56778999999999999999 56777777776654
No 81
>PRK13558 bacterio-opsin activator; Provisional
Probab=93.94 E-value=0.095 Score=58.91 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCH--HHHHHHHHHHHhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR--NELRNLWQHVWRR 54 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~--~ELl~~I~~lLrr 54 (504)
..+.+|||++|+..+.....+++..|+.+||.||... .+|..+++.++..
T Consensus 76 ~~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 76 TTAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 4678999999999999999999999999999999754 3666666666543
No 82
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=93.52 E-value=0.03 Score=54.53 Aligned_cols=42 Identities=50% Similarity=0.782 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCcccchhhhhhhhcCCCCCc
Q 010665 438 RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKG 479 (504)
Q Consensus 438 ~~~~r~~~~~r~~~k~~~r~~~k~~ry~~rk~~a~~r~r~kg 479 (504)
....|++.+.||+++++.|.|.++++|..|+..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 456799999999999999999999999999999999999999
No 83
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=92.74 E-value=0.2 Score=57.51 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=40.6
Q ss_pred CC-CcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 7 KN-IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 7 p~-IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
+. +|||++|++... ...+++..|+++||.||++..+|...|+.++...
T Consensus 598 ~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 598 EDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred CCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 45 489999987654 4678999999999999999999999999887543
No 84
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=92.45 E-value=0.26 Score=51.39 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=33.6
Q ss_pred CcEEEEecCC--CHHHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHHH
Q 010665 9 IPVIMMSSQD--SVSTVYKCMMRGAADYLVKPVRR---------NELRNLWQHVW 52 (504)
Q Consensus 9 IPIIvLSa~~--d~~~~~eAL~~GAdDYLvKP~~~---------~ELl~~I~~lL 52 (504)
+|||++++.. ......++++.|++|||.||+.. .+|..+++.+.
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~ 131 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAA 131 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHh
Confidence 8999999864 35667899999999999999943 44555555544
No 85
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.09 E-value=0.45 Score=49.12 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=36.7
Q ss_pred CcEEEEec-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 9 IPVIMMSS-QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 9 IPIIvLSa-~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
..||++.. ..+......||..||.|||.+|++..+|...|..+.
T Consensus 42 ~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 42 RRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 34554444 567889999999999999999999999999998764
No 86
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=81.68 E-value=1.3 Score=44.44 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+..+|+++|++++. ...+++..|.|||.||+..+.|...+..+.+.
T Consensus 73 ~~~~~Ivfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 73 DPRPAIVFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred CCCCeEEEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 566889999998766 66778999999999999999999999877664
No 87
>PRK12704 phosphodiesterase; Provisional
Probab=75.83 E-value=2.6 Score=46.99 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred CcEEEEecCCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 9 IPVIMMSSQDSVS--TVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 9 IPIIvLSa~~d~~--~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+|+||+++... ....+|+.++.||.+||+++++++..++..+..
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 4688999999987 889999999999999999999999999877654
No 88
>PRK15320 transcriptional activator SprB; Provisional
Probab=75.41 E-value=4.5 Score=39.89 Aligned_cols=60 Identities=10% Similarity=-0.081 Sum_probs=45.7
Q ss_pred cccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCCCCCCCcccccCcchh
Q 010665 106 DEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQKSLVPVTEAQGSEVA 170 (504)
Q Consensus 106 g~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~~~~~~~~~~~~~~~ 170 (504)
...-.||.+|.+||.+|++-. .||.+.+- ...+||..+ +..||+-+.++-.-..|.|-++
T Consensus 160 ~~~~~LSdREIEVL~LLAkG~SNKEIAekL~-----LS~KTVSTYKnRLLeKLgAkN~~~~~~~~~~~~~ 224 (251)
T PRK15320 160 NLPPGVTQAKYALLILLSSGHPAIELAKKFG-----LGTKTVSIYRKKVMYRLGMDSSPLSLFRGLKLDA 224 (251)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHhc-----cchhhHHHHHHHHHHHcCCCCCchHHHcccchhh
Confidence 345579999999999999876 89998883 667788887 6777777777766666655544
No 89
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=72.77 E-value=7.3 Score=41.38 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=29.4
Q ss_pred CCCcEEEEecCCC--HHHHHHHHHcCCCEEEECCCC
Q 010665 7 KNIPVIMMSSQDS--VSTVYKCMMRGAADYLVKPVR 40 (504)
Q Consensus 7 p~IPIIvLSa~~d--~~~~~eAL~~GAdDYLvKP~~ 40 (504)
..+||||+++-.. .+..++|+++||.||+.||..
T Consensus 73 ~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 6799999998655 567789999999999999984
No 90
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=67.37 E-value=6 Score=30.34 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 109 SSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 109 ~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
..||++|.++|.++++.. .+|...+ ....++|..| +..|||
T Consensus 2 ~~LT~~E~~vl~~l~~G~~~~eIA~~l-----~is~~tV~~~~~~i~~Kl~ 47 (58)
T PF00196_consen 2 PSLTERELEVLRLLAQGMSNKEIAEEL-----GISEKTVKSHRRRIMKKLG 47 (58)
T ss_dssp GSS-HHHHHHHHHHHTTS-HHHHHHHH-----TSHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHhcCCcchhHHhc-----CcchhhHHHHHHHHHHHhC
Confidence 369999999999999876 7888877 4557788877 444443
No 91
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=58.11 E-value=17 Score=42.34 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=39.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
..++|+++...+......+++.|+++|+.||+...+|+..+....
T Consensus 606 ~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 606 TDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 356888888889988999999999999999999999999887655
No 92
>PRK09191 two-component response regulator; Provisional
Probab=57.89 E-value=16 Score=35.54 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 25 KCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 25 eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+...|+.+||.||++.++|...|+.++...
T Consensus 225 ~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 225 TGERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred HHHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 3445678999999999999999998877553
No 93
>PRK13870 transcriptional regulator TraR; Provisional
Probab=57.77 E-value=12 Score=37.28 Aligned_cols=42 Identities=0% Similarity=-0.179 Sum_probs=34.2
Q ss_pred cccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh---hhhcC
Q 010665 108 QSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA---RVNYG 154 (504)
Q Consensus 108 q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~---~~kl~ 154 (504)
...||+||.|+|...++-+ .||...+ ....+||++|+ +.|||
T Consensus 171 ~~~LT~RE~E~L~W~A~GKT~~EIa~IL-----gISe~TV~~Hl~na~~KLg 217 (234)
T PRK13870 171 AAWLDPKEATYLRWIAVGKTMEEIADVE-----GVKYNSVRVKLREAMKRFD 217 (234)
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHcC
Confidence 3579999999999999887 7888887 67789999994 55543
No 94
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=49.80 E-value=17 Score=36.15 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=34.0
Q ss_pred cccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 108 QSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 108 q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
...||++|.++|.++++.. .||.+.+ ....+||+.| ++.||+
T Consensus 177 ~~~LT~rE~evl~~~a~G~t~~eIa~~l-----~is~~TV~~h~~~~~~KL~ 223 (240)
T PRK10188 177 EMNFSKREKEILKWTAEGKTSAEIAMIL-----SISENTVNFHQKNMQKKFN 223 (240)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHhC
Confidence 3579999999999999887 7888887 5778999999 455544
No 95
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=42.82 E-value=29 Score=34.62 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=31.5
Q ss_pred ccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh
Q 010665 107 EQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA 149 (504)
Q Consensus 107 ~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~ 149 (504)
....||++|.++|.++++.. .+|.+.+ ....+||+.|.
T Consensus 140 ~~~~LS~RE~eVL~Lia~G~SnkEIA~~L-----~IS~~TVk~hv 179 (217)
T PRK13719 140 AKNKVTKYQNDVFILYSFGFSHEYIAQLL-----NITVGSSKNKI 179 (217)
T ss_pred ccCCCCHHHHHHHHHHHCCCCHHHHHHHh-----CCCHHHHHHHH
Confidence 34579999999999999887 8898887 56678888883
No 96
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=42.49 E-value=15 Score=40.27 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=42.1
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 11 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 11 IIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
|+++|...+.....+.+++|+++||.||+....+..+.+.+.+...
T Consensus 61 ~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~k~ 106 (435)
T COG3706 61 VVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRLKC 106 (435)
T ss_pred eEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccchh
Confidence 8999999999999999999999999999999999999988876543
No 97
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription]
Probab=41.09 E-value=40 Score=25.50 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=28.3
Q ss_pred ccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh
Q 010665 109 SSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA 149 (504)
Q Consensus 109 ~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~ 149 (504)
..||++|.+++.++.+.. .+|...+ .....+|..|.
T Consensus 3 ~~Lt~rE~~v~~l~~~G~s~~eia~~l-----~is~~tV~~h~ 40 (65)
T COG2771 3 ADLTPREREILRLVAQGKSNKEIARIL-----GISEETVKTHL 40 (65)
T ss_pred ccCCHHHHHHHHHHHCCCCHHHHHHHH-----CCCHHHHHHHH
Confidence 469999999999998875 7787776 44567777773
No 98
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.53 E-value=44 Score=28.55 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=32.8
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHHhh
Q 010665 11 VIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 54 (504)
Q Consensus 11 IIvLSa~~d~~~~~eAL~~GAdDYLvKP~--~~~ELl~~I~~lLrr 54 (504)
+|........+.+.+|++.|..=|+-||+ +.+++...++.+-+.
T Consensus 67 ~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 67 IIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 33333345578889999999999999998 778887777665443
No 99
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.02 E-value=73 Score=32.37 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=37.6
Q ss_pred CCCCCcEEEEecCC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 5 ICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 5 ~~p~IPIIvLSa~~------d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
..+++|+|+|+-.. -.....+|.++|+++.|+-.+.++|....+..+-.
T Consensus 86 ~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred cCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 45789999998553 34557889999999999987888877776666543
No 100
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=38.40 E-value=39 Score=32.97 Aligned_cols=36 Identities=6% Similarity=-0.050 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhh
Q 010665 110 SCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEAR 150 (504)
Q Consensus 110 sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~ 150 (504)
.||++|.+||.++++.. .||.+.+ ....+||+.+.+
T Consensus 133 ~LSpRErEVLrLLAqGkTnKEIAe~L-----~IS~rTVkth~s 170 (198)
T PRK15201 133 HFSVTERHLLKLIASGYHLSETAALL-----SLSEEQTKSLRR 170 (198)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHh-----CCCHHHHHHHHH
Confidence 49999999999999887 8898887 566788888843
No 101
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=36.78 E-value=46 Score=26.78 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCcccchhhhhhhhcCCC-CCccccc
Q 010665 459 DKKVRYESRKKLAEQRPR-VKGQFVR 483 (504)
Q Consensus 459 ~k~~ry~~rk~~a~~r~r-~kg~f~~ 483 (504)
.|+.-|++|-..|-.||| --|||..
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 567889999999999999 6699975
No 102
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.47 E-value=46 Score=30.41 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=28.9
Q ss_pred CCCcEE--EEecCCCHHHHHHHHHcCCCEEEECCCCHHH
Q 010665 7 KNIPVI--MMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 43 (504)
Q Consensus 7 p~IPII--vLSa~~d~~~~~eAL~~GAdDYLvKP~~~~E 43 (504)
+.+.|| +.|+.-+.+.+++|+..|||+.|+--....|
T Consensus 28 ~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 28 PNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred CceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccc
Confidence 445554 6788889999999999999999987555444
No 103
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.96 E-value=1.3e+02 Score=30.44 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=36.1
Q ss_pred CCCcEEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 7 KNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 7 p~IPIIvLSa~~d------~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
.++|+++|+-..- ...+.+|.++|+++.|+-....+++...+..+-
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 5789888877765 667889999999999998888777766665553
No 104
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=29.92 E-value=1.7e+02 Score=30.09 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=42.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYL-----VKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYL-----vKP~~~~ELl~~I~~lLrr~ 55 (504)
.+++|||+-.+-...+++.+||++|+++.| .|--++.++...++..++-.
T Consensus 187 ~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 187 NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999975 46678899999988877543
No 105
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=29.30 E-value=56 Score=28.58 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=32.8
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 51 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~l 51 (504)
+..+.+|||++......... ..+.+-|..|++..+|...|+++
T Consensus 65 ~~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 65 KWAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred hhCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 35689999999988776111 12666788899999999999875
No 106
>PLN02591 tryptophan synthase
Probab=27.98 E-value=1.6e+02 Score=29.89 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCCcEEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 7 KNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 7 p~IPIIvLSa~~d------~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
.++|+|+|+=+.. .....+|.++|+++.|+-.+.++|....+..+.+
T Consensus 77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5789998887654 3346788999999999998988888877766644
No 107
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.70 E-value=1.8e+02 Score=28.98 Aligned_cols=46 Identities=11% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCcEEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 8 NIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 8 ~IPIIvLSa~~d------~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
++||++|+-..- ...+.++.++|+++.++-...++++...++.+.+
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 689988877554 5667789999999999976777766555555443
No 108
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.80 E-value=1.7e+02 Score=29.28 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=34.9
Q ss_pred cCCCCCcEEEEecC------CCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Q 010665 4 EICKNIPVIMMSSQ------DSVSTVYKCMMRGAADYLVKPVRRNELRNL 47 (504)
Q Consensus 4 ~~~p~IPIIvLSa~------~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~ 47 (504)
...-.+|||+|+-+ +...++..+-++||.+||+-.+.++|-...
T Consensus 91 ~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 91 PQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred ccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 34456899999764 567788899999999999998888876543
No 109
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=22.70 E-value=1.4e+02 Score=30.44 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCE------EEECCCCHHHHHHHHHHHHhhhc
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAAD------YLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdD------YLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
.+|||...+-.+.+++.+++..||+. +|..|.-+.++...|...+....
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999986 56677666667777766665543
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.58 E-value=83 Score=36.68 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.9
Q ss_pred ccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHhhhh
Q 010665 109 SSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEARVN 152 (504)
Q Consensus 109 ~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~~~k 152 (504)
..||++|.+|+.++.+.. .||.+.+ ....+||+.|++.-
T Consensus 837 ~~lt~~e~~v~~~~~~g~~~~~ia~~l-----~~s~~tv~~h~~~~ 877 (903)
T PRK04841 837 SPLTQREWQVLGLIYSGYSNEQIAGEL-----DVAATTIKTHIRNL 877 (903)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 459999999999999887 8999988 57789999995543
Done!