Query 010665
Match_columns 504
No_of_seqs 369 out of 2186
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r0j_A Possible two component 99.6 6.3E-15 2.2E-19 142.2 11.3 142 5-167 92-245 (250)
2 3q9s_A DNA-binding response re 99.4 2.5E-12 8.6E-17 124.7 12.9 123 6-156 106-237 (249)
3 1kgs_A DRRD, DNA binding respo 99.3 9.8E-13 3.3E-17 123.5 6.8 126 5-155 71-205 (225)
4 2gwr_A DNA-binding response re 99.3 2.2E-12 7.5E-17 123.2 8.3 136 7-167 75-224 (238)
5 2oqr_A Sensory transduction pr 99.3 2.5E-12 8.6E-17 121.3 8.6 129 7-156 74-211 (230)
6 1ys7_A Transcriptional regulat 99.3 1.5E-12 5.3E-17 122.8 6.5 129 5-155 76-213 (233)
7 1p2f_A Response regulator; DRR 99.3 6.8E-12 2.3E-16 117.8 10.5 132 6-167 69-214 (220)
8 2hqr_A Putative transcriptiona 99.3 5.2E-12 1.8E-16 118.8 9.1 133 8-168 68-216 (223)
9 1a04_A Nitrate/nitrite respons 99.0 1.8E-09 6.1E-14 100.8 11.6 119 5-155 76-199 (215)
10 3klo_A Transcriptional regulat 98.9 1.1E-09 3.6E-14 103.7 6.0 119 5-154 80-203 (225)
11 3c3w_A Two component transcrip 98.7 2.7E-09 9.4E-14 101.1 3.2 119 5-156 72-195 (225)
12 1yio_A Response regulatory pro 98.7 9.4E-09 3.2E-13 95.2 5.5 110 5-155 73-187 (208)
13 3to5_A CHEY homolog; alpha(5)b 98.7 2.9E-08 1E-12 88.8 6.8 51 4-54 83-133 (134)
14 3gl9_A Response regulator; bet 98.3 1.1E-06 3.8E-11 74.5 7.8 49 5-53 73-121 (122)
15 2zxj_A Transcriptional regulat 98.3 4.4E-07 1.5E-11 80.0 4.8 77 90-168 18-108 (120)
16 3h1g_A Chemotaxis protein CHEY 98.3 1.4E-06 4.9E-11 74.3 7.6 50 5-54 78-127 (129)
17 3t6k_A Response regulator rece 98.2 2E-06 7E-11 74.2 7.3 53 5-57 75-127 (136)
18 3f6p_A Transcriptional regulat 98.2 2.2E-06 7.6E-11 72.3 6.8 48 7-54 72-119 (120)
19 2pl1_A Transcriptional regulat 98.2 3.1E-06 1.1E-10 70.5 7.3 51 5-55 69-119 (121)
20 1dbw_A Transcriptional regulat 98.2 2.8E-06 9.7E-11 71.8 7.0 51 5-55 72-122 (126)
21 3kto_A Response regulator rece 98.2 2.9E-06 9.9E-11 73.0 7.0 54 5-58 77-130 (136)
22 3lua_A Response regulator rece 98.1 3.2E-06 1.1E-10 72.7 6.7 54 5-58 78-131 (140)
23 3b2n_A Uncharacterized protein 98.1 3.3E-06 1.1E-10 72.3 6.7 53 5-57 74-126 (133)
24 3snk_A Response regulator CHEY 98.1 2.9E-06 9.9E-11 72.7 5.9 50 5-54 84-133 (135)
25 3kht_A Response regulator; PSI 98.1 6.5E-06 2.2E-10 71.1 8.2 54 5-58 78-132 (144)
26 1zgz_A Torcad operon transcrip 98.1 6.1E-06 2.1E-10 69.0 7.7 50 6-55 71-120 (122)
27 4dad_A Putative pilus assembly 98.1 2.7E-06 9.1E-11 73.8 5.6 52 5-56 92-143 (146)
28 3crn_A Response regulator rece 98.1 3.9E-06 1.3E-10 71.8 6.5 52 6-57 73-124 (132)
29 1jbe_A Chemotaxis protein CHEY 98.1 7.5E-06 2.6E-10 69.0 8.2 51 5-55 76-126 (128)
30 2r25_B Osmosensing histidine p 98.1 5.7E-06 1.9E-10 71.2 7.2 50 6-55 79-128 (133)
31 3jte_A Response regulator rece 98.1 5E-06 1.7E-10 71.6 6.6 54 5-58 74-127 (143)
32 1zh2_A KDP operon transcriptio 98.1 8.7E-06 3E-10 67.6 7.7 50 6-55 70-119 (121)
33 3cfy_A Putative LUXO repressor 98.1 6.7E-06 2.3E-10 71.1 7.2 53 5-57 73-125 (137)
34 2a9o_A Response regulator; ess 98.1 8E-06 2.7E-10 67.7 7.3 48 7-54 71-118 (120)
35 4e7p_A Response regulator; DNA 98.1 6.1E-06 2.1E-10 72.1 6.9 53 5-57 91-143 (150)
36 1tmy_A CHEY protein, TMY; chem 98.1 5.1E-06 1.8E-10 69.2 6.0 47 6-52 73-119 (120)
37 3cnb_A DNA-binding response re 98.0 1.1E-05 3.6E-10 69.1 8.0 53 5-57 81-133 (143)
38 1i3c_A Response regulator RCP1 98.0 9E-06 3.1E-10 71.1 7.7 50 6-55 89-138 (149)
39 1srr_A SPO0F, sporulation resp 98.0 6.3E-06 2.2E-10 69.2 6.2 49 6-54 73-121 (124)
40 3eul_A Possible nitrate/nitrit 98.0 7.8E-06 2.7E-10 71.4 7.0 54 5-58 86-139 (152)
41 3gt7_A Sensor protein; structu 98.0 1E-05 3.5E-10 71.2 7.7 52 6-57 79-130 (154)
42 1xhf_A DYE resistance, aerobic 98.0 1.1E-05 3.6E-10 67.6 7.4 49 7-55 73-121 (123)
43 3rjp_A COVR; winged helix-turn 98.0 4.2E-06 1.4E-10 69.8 4.8 74 91-166 5-91 (96)
44 1p6q_A CHEY2; chemotaxis, sign 98.0 7E-06 2.4E-10 69.3 6.3 49 6-54 79-127 (129)
45 2zay_A Response regulator rece 98.0 1.2E-05 4.1E-10 69.5 7.9 53 5-57 79-131 (147)
46 3hdg_A Uncharacterized protein 98.0 5E-06 1.7E-10 71.1 5.4 53 5-57 76-128 (137)
47 3heb_A Response regulator rece 98.0 1.3E-05 4.4E-10 70.0 8.1 54 5-58 86-139 (152)
48 3f6c_A Positive transcription 98.0 3.5E-06 1.2E-10 71.7 4.2 54 5-58 71-124 (134)
49 2jba_A Phosphate regulon trans 98.0 4.2E-06 1.4E-10 70.3 4.5 50 6-55 74-123 (127)
50 3rqi_A Response regulator prot 98.0 3.6E-06 1.2E-10 76.8 4.2 52 5-56 76-127 (184)
51 3eod_A Protein HNR; response r 98.0 7.3E-06 2.5E-10 69.4 5.8 51 5-55 76-127 (130)
52 1k68_A Phytochrome response re 98.0 1.1E-05 3.9E-10 68.3 7.0 51 7-57 84-134 (140)
53 3hdv_A Response regulator; PSI 98.0 1.4E-05 4.7E-10 68.2 7.4 52 6-57 79-130 (136)
54 3hzh_A Chemotaxis response reg 98.0 6.8E-06 2.3E-10 72.7 5.5 49 5-53 108-156 (157)
55 1k66_A Phytochrome response re 98.0 1.4E-05 5E-10 68.5 7.4 50 7-56 91-140 (149)
56 2qzj_A Two-component response 98.0 1.6E-05 5.5E-10 68.5 7.6 49 8-56 75-123 (136)
57 1mb3_A Cell division response 98.0 6.8E-06 2.3E-10 68.7 5.0 49 6-54 73-121 (124)
58 3q9v_A DNA-binding response re 98.0 4.3E-06 1.5E-10 74.7 4.0 74 91-166 43-129 (133)
59 3hv2_A Response regulator/HD d 98.0 1.4E-05 4.8E-10 70.0 7.3 53 5-57 83-136 (153)
60 1dz3_A Stage 0 sporulation pro 98.0 8.9E-06 3E-10 69.0 5.8 50 6-55 75-124 (130)
61 2qxy_A Response regulator; reg 98.0 9.4E-06 3.2E-10 69.8 5.9 53 5-57 72-124 (142)
62 2z9m_A Response regulator YYCF 97.9 6.9E-06 2.4E-10 71.5 4.8 76 91-168 19-108 (120)
63 3cg0_A Response regulator rece 97.9 1.6E-05 5.5E-10 67.8 7.0 52 7-58 81-132 (140)
64 3m6m_D Sensory/regulatory prot 97.9 1.8E-05 6E-10 69.0 7.2 49 6-54 88-136 (143)
65 2qr3_A Two-component system re 97.9 1.3E-05 4.4E-10 68.5 6.2 52 6-57 78-129 (140)
66 3zq7_A KDP operon transcriptio 97.9 6.8E-06 2.3E-10 69.2 4.3 65 90-156 10-83 (102)
67 2pln_A HP1043, response regula 97.9 1.7E-05 5.8E-10 67.9 6.9 48 8-55 86-134 (137)
68 3nhm_A Response regulator; pro 97.9 1E-05 3.5E-10 68.7 5.4 52 6-58 75-126 (133)
69 1mvo_A PHOP response regulator 97.9 1E-05 3.5E-10 68.9 4.9 51 6-56 73-123 (136)
70 3n53_A Response regulator rece 97.9 5.3E-06 1.8E-10 71.4 3.1 52 7-58 75-126 (140)
71 1qo0_D AMIR; binding protein, 97.9 1.7E-05 5.8E-10 72.7 6.6 50 7-56 78-127 (196)
72 2jzy_A Transcriptional regulat 97.9 1.5E-05 5.1E-10 68.7 5.9 72 94-167 14-98 (112)
73 1opc_A OMPR, OMPRC; transcript 97.9 1.3E-05 4.4E-10 68.5 5.1 73 93-167 16-102 (110)
74 3cz5_A Two-component response 97.9 1.4E-05 4.8E-10 69.9 5.5 53 6-58 77-129 (153)
75 1qkk_A DCTD, C4-dicarboxylate 97.8 2.5E-05 8.4E-10 68.5 6.9 52 6-57 73-124 (155)
76 3kcn_A Adenylate cyclase homol 97.8 1.5E-05 5.2E-10 69.7 5.5 53 5-57 73-126 (151)
77 1dcf_A ETR1 protein; beta-alph 97.8 3.3E-05 1.1E-09 66.0 7.4 47 9-55 84-130 (136)
78 3luf_A Two-component system re 97.8 1.8E-05 6.2E-10 77.0 6.3 53 6-58 197-249 (259)
79 3cu5_A Two component transcrip 97.8 8.9E-06 3E-10 70.6 3.6 52 5-56 74-125 (141)
80 3grc_A Sensor protein, kinase; 97.8 8.4E-06 2.9E-10 69.9 3.4 54 5-58 77-131 (140)
81 3h5i_A Response regulator/sens 97.8 5.7E-06 1.9E-10 71.5 1.9 51 7-57 77-127 (140)
82 3ilh_A Two component response 97.8 3.5E-05 1.2E-09 66.0 6.9 52 5-56 89-141 (146)
83 2pmu_A Response regulator PHOP 97.8 1.8E-05 6.1E-10 67.9 4.9 73 93-167 19-103 (110)
84 1gxq_A PHOB, phosphate regulon 97.8 1.4E-05 4.9E-10 67.9 3.8 63 91-155 14-85 (106)
85 2rjn_A Response regulator rece 97.7 4.5E-05 1.5E-09 66.7 6.9 53 5-57 76-129 (154)
86 3dzd_A Transcriptional regulat 97.7 2.5E-05 8.4E-10 80.6 5.7 53 5-57 69-121 (368)
87 2hqn_A Putative transcriptiona 97.7 1.1E-05 3.7E-10 68.9 2.5 73 93-167 14-101 (109)
88 3eqz_A Response regulator; str 97.7 1.6E-05 5.5E-10 67.3 3.4 53 5-57 71-128 (135)
89 3i42_A Response regulator rece 97.7 1.6E-05 5.5E-10 67.0 3.3 49 6-55 75-123 (127)
90 2jk1_A HUPR, hydrogenase trans 97.7 5.7E-05 1.9E-09 64.9 6.7 50 6-55 70-120 (139)
91 2qsj_A DNA-binding response re 97.7 2.2E-05 7.6E-10 68.5 4.0 53 6-58 76-128 (154)
92 2qvg_A Two component response 97.7 7.1E-05 2.4E-09 64.1 6.9 47 7-53 88-134 (143)
93 3cg4_A Response regulator rece 97.7 9.2E-06 3.1E-10 69.7 1.1 54 5-58 78-131 (142)
94 2hwv_A DNA-binding response re 97.7 1.9E-05 6.6E-10 69.1 3.2 73 93-167 28-114 (121)
95 1w25_A Stalked-cell differenti 97.7 6.9E-05 2.4E-09 78.1 7.8 50 6-55 73-122 (459)
96 2gkg_A Response regulator homo 97.7 4.3E-05 1.5E-09 63.5 5.1 48 6-54 78-125 (127)
97 3mm4_A Histidine kinase homolo 97.6 6.4E-05 2.2E-09 70.2 6.2 50 6-57 149-199 (206)
98 2k4j_A Putative transcriptiona 97.6 1.9E-05 6.6E-10 68.5 2.3 59 95-155 28-95 (115)
99 2qv0_A Protein MRKE; structura 97.6 0.00012 4E-09 62.9 7.2 51 5-57 80-130 (143)
100 2ayx_A Sensor kinase protein R 97.6 7.8E-05 2.7E-09 72.1 6.7 51 6-56 199-249 (254)
101 1ny5_A Transcriptional regulat 97.6 5.3E-05 1.8E-09 78.5 5.8 51 5-55 69-119 (387)
102 3bre_A Probable two-component 97.6 0.00013 4.6E-09 73.0 8.3 48 6-53 91-138 (358)
103 1dc7_A NTRC, nitrogen regulati 97.6 6.3E-06 2.2E-10 68.6 -1.4 50 6-55 73-122 (124)
104 3c3m_A Response regulator rece 97.5 7.6E-05 2.6E-09 64.1 5.1 51 6-56 75-125 (138)
105 3lte_A Response regulator; str 97.5 0.00016 5.4E-09 61.0 6.9 49 7-56 79-127 (132)
106 1s8n_A Putative antiterminator 97.5 6.1E-05 2.1E-09 69.4 4.4 48 9-56 86-133 (205)
107 2vyc_A Biodegradative arginine 97.5 5.6E-06 1.9E-10 93.2 -3.9 52 5-56 82-135 (755)
108 3a10_A Response regulator; pho 97.5 2.8E-05 9.6E-10 64.3 1.3 45 6-52 71-115 (116)
109 3n0r_A Response regulator; sig 97.4 3.6E-05 1.2E-09 76.5 1.8 48 8-57 233-280 (286)
110 3eq2_A Probable two-component 97.4 8.2E-05 2.8E-09 76.3 4.1 52 5-56 74-126 (394)
111 3t8y_A CHEB, chemotaxis respon 97.2 0.00026 8.8E-09 63.1 4.8 47 9-55 99-156 (164)
112 2lpm_A Two-component response 97.2 9.5E-06 3.3E-10 71.5 -4.7 45 7-54 78-122 (123)
113 2j48_A Two-component sensor ki 97.2 8.2E-05 2.8E-09 60.6 1.1 45 6-53 73-117 (119)
114 2rdm_A Response regulator rece 97.1 0.0004 1.4E-08 58.4 4.9 50 6-57 77-126 (132)
115 1w25_A Stalked-cell differenti 96.9 0.0011 3.8E-08 68.9 6.4 51 6-56 222-272 (459)
116 3c97_A Signal transduction his 96.7 0.00065 2.2E-08 58.2 2.3 49 6-57 85-133 (140)
117 3kyj_B CHEY6 protein, putative 96.6 0.00077 2.6E-08 58.1 2.3 41 9-49 88-130 (145)
118 3luf_A Two-component system re 96.6 0.0035 1.2E-07 60.7 7.1 34 8-41 74-107 (259)
119 2b4a_A BH3024; flavodoxin-like 96.5 0.00046 1.6E-08 58.9 0.3 47 5-55 85-132 (138)
120 1a2o_A CHEB methylesterase; ba 96.3 0.0034 1.2E-07 64.2 5.4 46 9-54 77-133 (349)
121 3sy8_A ROCR; TIM barrel phosph 96.2 0.00098 3.4E-08 68.8 0.5 51 6-56 75-130 (400)
122 3cwo_X Beta/alpha-barrel prote 94.9 0.014 4.9E-07 54.0 3.6 49 6-54 51-101 (237)
123 3ogl_Q JAZ1 incomplete degron 94.6 0.018 6E-07 35.4 2.0 19 439-457 3-21 (21)
124 3q7r_A Transcriptional regulat 92.7 0.39 1.3E-05 41.1 7.7 51 4-55 69-119 (121)
125 3ogk_Q JAZ1 incomplete degron 91.3 0.06 2E-06 33.5 0.9 19 442-460 1-19 (22)
126 2ff4_A Probable regulatory pro 86.6 0.34 1.2E-05 49.8 3.1 53 104-156 23-86 (388)
127 3cwo_X Beta/alpha-barrel prote 85.4 1.1 3.8E-05 41.0 5.7 43 7-49 173-221 (237)
128 4g92_A HAPB protein; transcrip 55.2 19 0.00066 28.0 5.0 27 459-485 36-63 (64)
129 3ulq_B Transcriptional regulat 50.0 14 0.00046 30.0 3.7 39 106-149 25-65 (90)
130 3szt_A QCSR, quorum-sensing co 37.6 25 0.00085 33.1 3.9 38 107-149 172-211 (237)
131 2ekc_A AQ_1548, tryptophan syn 30.0 57 0.002 31.3 5.2 46 7-52 93-144 (262)
132 1p4w_A RCSB; solution structur 28.1 45 0.0015 27.5 3.5 37 108-149 32-70 (99)
133 3qp6_A CVIR transcriptional re 27.8 41 0.0014 32.3 3.7 41 109-154 196-241 (265)
134 1je8_A Nitrate/nitrite respons 26.8 72 0.0024 24.8 4.4 39 106-149 17-57 (82)
135 2q0o_A Probable transcriptiona 26.1 46 0.0016 31.0 3.6 42 108-154 173-219 (236)
136 4gmf_A Yersiniabactin biosynth 25.6 77 0.0026 32.2 5.4 35 20-54 84-118 (372)
137 1l3l_A Transcriptional activat 24.3 51 0.0018 30.6 3.6 42 108-154 171-217 (234)
138 2rnj_A Response regulator prot 24.2 69 0.0024 25.2 3.9 46 104-154 23-73 (91)
139 3nav_A Tryptophan synthase alp 24.2 80 0.0027 30.9 5.0 46 6-51 95-146 (271)
140 3c57_A Two component transcrip 23.9 72 0.0024 25.6 3.9 46 105-155 22-72 (95)
141 3vnd_A TSA, tryptophan synthas 23.1 56 0.0019 31.9 3.7 46 7-52 94-145 (267)
142 1thf_D HISF protein; thermophI 21.7 1.8E+02 0.0061 26.9 6.9 41 8-48 195-241 (253)
No 1
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.57 E-value=6.3e-15 Score=142.17 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=106.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|++.+.....++++.||++||.||++.++|..+|+.++++...................
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------- 160 (250)
T 3r0j_A 92 DGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIE----------- 160 (250)
T ss_dssp TTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEETTEE-----------
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEECCEE-----------
Confidence 457899999999999999999999999999999999999999999999875432100011111111111
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
.......+. ..+..+.||++|++||.+|++++ ++|.+.+|+.+.....++|+.| ++.||+.
T Consensus 161 --------~~~~~~~~~--~~~~~~~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 161 --------LDEETHEVW--KAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp --------EETTTCCEE--ETTEEECCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred --------EeccccEEE--ECCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 111233444 56677899999999999999985 8999999999888889999999 6889876
Q ss_pred C---CCCCcccccCc
Q 010665 156 K---SLVPVTEAQGS 167 (504)
Q Consensus 156 ~---~~~~~~~~~~~ 167 (504)
. .|......||.
T Consensus 231 ~~~~~I~tv~g~GY~ 245 (250)
T 3r0j_A 231 GEKRLLHTLRGVGYV 245 (250)
T ss_dssp SSSCCEEEETTTEEE
T ss_pred CCCCcEEEeccceEE
Confidence 2 35555566654
No 2
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.38 E-value=2.5e-12 Score=124.74 Aligned_cols=123 Identities=19% Similarity=0.347 Sum_probs=96.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++|+..+...+.+|++.||++||.||++.++|+.+|+.++++.... ...+....++.
T Consensus 106 ~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~-------~~~~~~~~~~~--------- 169 (249)
T 3q9s_A 106 NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSE-------SLSMGDLTLDP--------- 169 (249)
T ss_dssp TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSC-------CEEETTEEEET---------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccC-------ceeECCEEEec---------
Confidence 57899999999999999999999999999999999999999999999765432 01111111111
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
..+.+. ..+....||++|++||.+|++++ ++|.+.+|+.......+||+.| ++.||+..
T Consensus 170 ----------~~~~~~--~~~~~~~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~ 237 (249)
T 3q9s_A 170 ----------QKRLVT--YKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDL 237 (249)
T ss_dssp ----------TTTEEE--ETTEEECCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCC
T ss_pred ----------ccCEEE--ECCEEeecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcC
Confidence 122223 44566789999999999999883 8999999999888889999999 67887754
No 3
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.34 E-value=9.8e-13 Score=123.53 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=91.5
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|++.+.....++++.||++||.||++.++|..+|+.++++..... ..........++.
T Consensus 71 ~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~~~~~~-------- 138 (225)
T 1kgs_A 71 SGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESK----STKLVCGDLILDT-------- 138 (225)
T ss_dssp TTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSC----SSEEEETTEEEET--------
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhccccc----CceEEECCEEEec--------
Confidence 3578999999999999999999999999999999999999999999998764321 1111111111111
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
..+.+. ..+..+.||++|+++|.+|++++ ++|.+.+|+.+.....+||+.| ++.||+.
T Consensus 139 -----------~~~~~~--~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 139 -----------ATKKAY--RGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp -----------TTTEEE--ETTEEECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred -----------ccCEEE--ECCEEEecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 112222 23455689999999999999883 8999999998777788999999 6777765
No 4
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.32 E-value=2.2e-12 Score=123.22 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=98.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.++++.... ...........++
T Consensus 75 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~----~~~~~~~~~~~~~----------- 139 (238)
T 2gwr_A 75 SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDE----PAEMLSIADVEID----------- 139 (238)
T ss_dssp CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSC----CCCEEEETTEEEE-----------
T ss_pred CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccC----cccceecCceEEc-----------
Confidence 3799999999999999999999999999999999999999999998764321 0000111111111
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCCC
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQKS 157 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~~ 157 (504)
...+.+. ..+....||++|+++|.+|++++ ++|.+.+|+.+.....+||+.| ++.||+...
T Consensus 140 --------~~~~~~~--~~~~~~~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~~ 209 (238)
T 2gwr_A 140 --------VPAHKVT--RNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDP 209 (238)
T ss_dssp --------TTTTEEE--ETTEEECCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSST
T ss_pred --------ccccEEE--ECCEEcccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccCC
Confidence 1122222 33455789999999999999983 8999999999888889999999 688887542
Q ss_pred -----CCCcccccCc
Q 010665 158 -----LVPVTEAQGS 167 (504)
Q Consensus 158 -----~~~~~~~~~~ 167 (504)
+......||.
T Consensus 210 ~~~~~i~~~~g~Gy~ 224 (238)
T 2gwr_A 210 ENPTVVLTVRGVGYK 224 (238)
T ss_dssp TSCSSEEEETTTEEE
T ss_pred CCCCeEEEeCCeeeE
Confidence 4444455554
No 5
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.32 E-value=2.5e-12 Score=121.34 Aligned_cols=129 Identities=20% Similarity=0.247 Sum_probs=95.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...................+
T Consensus 74 ~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 141 (230)
T 2oqr_A 74 SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRM------------ 141 (230)
T ss_dssp CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEE------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEE------------
Confidence 67999999999999999999999999999999999999999999998753210000000000011100
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
....+.+. ..+....||++|+++|.+|++++ ++|.+.+|+.+.....+||+.| ++.||+..
T Consensus 142 -------~~~~~~~~--~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 142 -------DVERHVVS--VNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp -------ETTTTEEE--ESSBCCCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred -------eccccEEE--ECCeeeecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 11122233 34556789999999999999983 8999999998877888999999 68888754
No 6
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.31 E-value=1.5e-12 Score=122.80 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=95.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++....... ...........++
T Consensus 76 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~--------- 145 (233)
T 1ys7_A 76 MDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATS-SSETITVGPLEVD--------- 145 (233)
T ss_dssp TTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCC-CCCEEEETTEEEE---------
T ss_pred cCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccc-cCcccccCCeEEc---------
Confidence 357899999999999988999999999999999999999999999999876432000 0011111111110
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
...+.+. ..+....||++|+++|.+|++++ ++|.+.+|+.+.....+||+.| ++.||+.
T Consensus 146 ----------~~~~~~~--~~~~~~~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 146 ----------IPGRRAR--VNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp ----------TTTTEEE--ETTEECCCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ----------cCccEEE--ECCEEeccCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 1122222 34556789999999999999983 8999999998877888999999 6778765
No 7
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.30 E-value=6.8e-12 Score=117.79 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=97.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccC
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASN 85 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~ 85 (504)
.+.+|||++|+..+.....+++..||++||.||++.++|..+|+.++++.... ........++.
T Consensus 69 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~-------~~~~~~~~~~~--------- 132 (220)
T 1p2f_A 69 RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKG-------LYDFGDLKIDA--------- 132 (220)
T ss_dssp CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCS-------EEEETTEEEET---------
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccccc-------CcccccEEEEC---------
Confidence 47899999999999999999999999999999999999999999998764310 01111111110
Q ss_pred CCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 86 HSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 86 ~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
..+.+. ..+....||++|+++|.+|++++ ++|.+.+|+.. ...+||+.| ++.||+..
T Consensus 133 ----------~~~~~~--~~~~~~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~--~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 133 ----------TGFTVF--LKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFWEDP--VSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp ----------TTTEEE--ETTEECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSC--CCTHHHHHHHHHHHHHHCSS
T ss_pred ----------CCCEEE--ECCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCC--CCcchHHHHHHHHHHHHhcc
Confidence 112222 23455689999999999999983 89999999876 677899999 68888753
Q ss_pred C-----CCCcccccCc
Q 010665 157 S-----LVPVTEAQGS 167 (504)
Q Consensus 157 ~-----~~~~~~~~~~ 167 (504)
. +......||.
T Consensus 199 ~~~~~~I~t~~g~GY~ 214 (220)
T 1p2f_A 199 PNRPRYIKTIWGVGYM 214 (220)
T ss_dssp TTSCSSEEEETTTEEE
T ss_pred CCCCceEEEecCcceE
Confidence 2 3344445553
No 8
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.29 E-value=5.2e-12 Score=118.83 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=99.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhhhccccCCCcccccccccchhhcccccccccCC
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNH 86 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~-~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s~~ 86 (504)
.+|||++|++.+.....+++..||++||.||+ +.++|..+|+.++++... .........++
T Consensus 68 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~-------~~~~~~~~~~~----------- 129 (223)
T 2hqr_A 68 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGS-------NVIEIGDLTIS----------- 129 (223)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCC-------CSEEETTEEEE-----------
T ss_pred CCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccC-------CeEEECCEEEe-----------
Confidence 89999999999999999999999999999999 999999999999876410 00011111111
Q ss_pred CCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcC----h--hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC-
Q 010665 87 SSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVED----M--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK- 156 (504)
Q Consensus 87 ~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en----~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~- 156 (504)
...+.+. ..+....||++|+++|.+|+++ . ++|.+.+|+.+.....+||+.| ++.||+..
T Consensus 130 --------~~~~~~~--~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~~~ 199 (223)
T 2hqr_A 130 --------PDEEKII--YKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPL 199 (223)
T ss_dssp --------TTTTEEE--ETTEEECCCSTTTHHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTTS
T ss_pred --------cccCEEE--ECCEEEecCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhcCC
Confidence 0112222 3445567999999999999998 3 8999999998877789999999 68888742
Q ss_pred ----C-CCCcccccCcc
Q 010665 157 ----S-LVPVTEAQGSE 168 (504)
Q Consensus 157 ----~-~~~~~~~~~~~ 168 (504)
. +......||.=
T Consensus 200 ~~~~~~I~tv~g~GY~l 216 (223)
T 2hqr_A 200 GISTVETVRRRGYRFCY 216 (223)
T ss_dssp SSCCEEECSSSEEEECC
T ss_pred CCCceEEEEecccceEE
Confidence 2 45555666653
No 9
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.00 E-value=1.8e-09 Score=100.84 Aligned_cols=119 Identities=10% Similarity=0.089 Sum_probs=86.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++..... .. .....+...
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~----~~---~~~~~~~~~------- 141 (215)
T 1a04_A 76 KSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLS----EA---LTPVLAASL------- 141 (215)
T ss_dssp SCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCC----TT---THHHHHHHC-------
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecC----HH---HHHHHHHHh-------
Confidence 4678999999999999999999999999999999999999999999998654321 00 000000000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
...... ..+....||++|+++|.+++++. ++|.+.+ ....+||+.| ++.||+-
T Consensus 142 -----------~~~~~~--~~~~~~~Lt~rE~~vl~~l~~g~s~~~Ia~~l-----~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 142 -----------RANRAT--TERDVNQLTPRERDILKLIAQGLPNKMIARRL-----DITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp --------------------CCCGGGSCHHHHHHHHHHHTTCCHHHHHHHH-----TCCHHHHHHHHHHHHHHHTC
T ss_pred -----------cccccC--CCccccCCCHHHHHHHHHHHcCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHcCC
Confidence 000111 23445679999999999999887 8898887 3456899998 5666654
No 10
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=98.90 E-value=1.1e-09 Score=103.66 Aligned_cols=119 Identities=8% Similarity=0.056 Sum_probs=85.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+++|||++|++.+......++..||++||.||+++++|..+|+.++++..... .. .....+...
T Consensus 80 ~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~----~~---~~~~~~~~~------- 145 (225)
T 3klo_A 80 SCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLT----RK---LAQEYILHY------- 145 (225)
T ss_dssp HCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCC----HH---HHHHHHHHH-------
T ss_pred hCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeC----HH---HHHHHHHHh-------
Confidence 4688999999999998899999999999999999999999999999998764431 00 000000000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh---hhhcC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA---RVNYG 154 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~---~~kl~ 154 (504)
....... ..+....||++|+++|.+|++.. ++|.+.+| ...+||+.|+ +.||+
T Consensus 146 ----------~~~~~~~--~~~~~~~Lt~rE~~vL~~l~~g~s~~~Ia~~l~-----~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 146 ----------RAGNSVV--TSQMYAKLTKREQQIIKLLGSGASNIEIADKLF-----VSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp ----------HTTCCCC--CCHHHHTSCHHHHHHHHHHTTTCCHHHHHHHTT-----CCHHHHHHHHHHHTTTSC
T ss_pred ----------hcccccc--cccccccCCHHHHHHHHHHHcCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhC
Confidence 0001111 33445679999999999999876 78888875 4568899884 44543
No 11
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.7e-09 Score=101.10 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++..... ... ....+...
T Consensus 72 ~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~----~~~---~~~~~~~~------- 137 (225)
T 3c3w_A 72 RMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLD----NRA---AAALMAKL------- 137 (225)
T ss_dssp HCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSC----HHH---HHHHHHHH-------
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeC----HHH---HHHHHHhc-------
Confidence 3678999999999999999999999999999999999999999999998764430 000 00000000
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
..... ..+....||++|+++|.+++++. ++|.+.+| ...+||+.| ++.||+..
T Consensus 138 ------------~~~~~--~~~~~~~LT~rE~~vL~~l~~g~s~~eIa~~l~-----is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 138 ------------RGAAE--KQDPLSGLTDQERTLLGLLSEGLTNKQIADRMF-----LAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp ------------HHHHH--HSCTTTTSCHHHHHHHHHHHTTCCHHHHHHHHT-----CCHHHHHHHHHHHHHHTTCC
T ss_pred ------------ccccc--cccccCCCCHHHHHHHHHHHCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhCCC
Confidence 00000 11334579999999999999987 89999985 456889988 56666543
No 12
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=98.71 E-value=9.4e-09 Score=95.21 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=82.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccccCCCcccccccccchhhccccccccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 84 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~~s~~~~~~~~~~~~~l~~~a~~da~s 84 (504)
..+.+|||++|++.+.....++++.||++||.||++.++|..+|+.++++..... ... ... ..
T Consensus 73 ~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~----~~~-----~~~-~~------- 135 (208)
T 1yio_A 73 ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERR----QAR-----ETQ-DQ------- 135 (208)
T ss_dssp TTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHH----HHH-----HHH-HH-------
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhH----HHH-----HHH-HH-------
Confidence 3578999999999998899999999999999999999999999999987653320 000 000 00
Q ss_pred CCCCCcchhccccceeeecCCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 85 NHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 85 ~~~~~~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
..+....||++|+++|.+++++. .+|.+.+ ....+||+.| ++.||+.
T Consensus 136 -------------------~~~~~~~Lt~rE~~vl~~l~~g~s~~~Ia~~l-----~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 136 -------------------LEQLFSSLTGREQQVLQLTIRGLMNKQIAGEL-----GIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp -------------------HHHHHHTSCHHHHHHHHHHTTTCCHHHHHHHH-----TCCHHHHHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHhcCHHHHHHHHHHHcCCcHHHHHHHc-----CCCHHHHHHHHHHHHHHhCC
Confidence 11223469999999999998876 7777765 4567889888 5666654
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.66 E-value=2.9e-08 Score=88.76 Aligned_cols=51 Identities=24% Similarity=0.521 Sum_probs=47.4
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
...+++|||++|++.+.+...+|+++||+|||+|||+..+|..+|+++++|
T Consensus 83 ~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 83 EELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999999999999875
No 14
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=98.33 E-value=1.1e-06 Score=74.53 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=45.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.+++
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999998874
No 15
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=98.30 E-value=4.4e-07 Score=79.99 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=63.6
Q ss_pred cchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCCC---
Q 010665 90 YMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQKS--- 157 (504)
Q Consensus 90 ~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~~--- 157 (504)
.++..+..+.+. .+|..+.||++||.||.+|++++ ++|++.+|+.+.....++++++ +|.||+.+.
T Consensus 18 ~l~ld~~~~~v~--~~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~~~~~l~v~I~rLRkKL~~~~~~~ 95 (120)
T 2zxj_A 18 DIVIYPDAYSIK--KRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp TEEEEGGGTEEE--ETTEEECCCHHHHHHHHHHHTTTTCCBCHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSSTTSC
T ss_pred CEEEECCCCEEE--ECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcChHHHHHHHHHHHhhCCCCC
Confidence 444555577888 88999999999999999999997 8999999999988899999999 789998753
Q ss_pred --CCCcccccCcc
Q 010665 158 --LVPVTEAQGSE 168 (504)
Q Consensus 158 --~~~~~~~~~~~ 168 (504)
|......||.=
T Consensus 96 ~~I~TvrG~GY~l 108 (120)
T 2zxj_A 96 EYIVTRRGVGYFL 108 (120)
T ss_dssp SSEEEETTTEEEE
T ss_pred CeEEEeCCEeeEE
Confidence 45555666654
No 16
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=98.29 E-value=1.4e-06 Score=74.26 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=46.5
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+.+|||++|++.+.....++++.||++||.||++.++|..+|+.++.+
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 78 RFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999999999999998854
No 17
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=98.23 E-value=2e-06 Score=74.25 Aligned_cols=53 Identities=28% Similarity=0.505 Sum_probs=47.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 75 ~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 75 LTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp GGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred CcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 35689999999999999999999999999999999999999999999987543
No 18
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=98.20 E-value=2.2e-06 Score=72.25 Aligned_cols=48 Identities=31% Similarity=0.449 Sum_probs=45.3
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+|||++|+..+.....++++.||++||.||++.++|..+|+.++++
T Consensus 72 ~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 72 YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999998865
No 19
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=98.18 E-value=3.1e-06 Score=70.51 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=47.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 69 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 69 NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp TTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 356899999999999999999999999999999999999999999988754
No 20
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=98.18 E-value=2.8e-06 Score=71.76 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=47.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|++.+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 72 ~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 72 LKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp TTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999999999999999999988654
No 21
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=98.17 E-value=2.9e-06 Score=72.99 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++......
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~ 130 (136)
T 3kto_A 77 RGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEG 130 (136)
T ss_dssp TTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCC
Confidence 357899999999999999999999999999999999999999999999876543
No 22
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.14 E-value=3.2e-06 Score=72.75 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=48.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++....
T Consensus 78 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 78 RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 568999999999999999999999999999999999999999999999876543
No 23
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=98.14 E-value=3.3e-06 Score=72.33 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 74 KHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred HCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 45789999999999999999999999999999999999999999999876543
No 24
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.12 E-value=2.9e-06 Score=72.74 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
..+.+|||++|++.+.....++++.||++||.||++.++|..+|+.+++.
T Consensus 84 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 84 LWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 34689999999999999999999999999999999999999999987754
No 25
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.12 E-value=6.5e-06 Score=71.15 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=50.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~-~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||+ +.++|..+|+.++++....
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999 9999999999999886543
No 26
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=98.11 E-value=6.1e-06 Score=68.96 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=46.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 71 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 71 RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999999999988764
No 27
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=98.11 E-value=2.7e-06 Score=73.81 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=48.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.++++..
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 4578999999999999999999999999999999999999999999987653
No 28
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=98.11 E-value=3.9e-06 Score=71.82 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 124 (132)
T 3crn_A 73 RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEK 124 (132)
T ss_dssp CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccC
Confidence 5689999999999999999999999999999999999999999999876543
No 29
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=98.11 E-value=7.5e-06 Score=69.01 Aligned_cols=51 Identities=20% Similarity=0.451 Sum_probs=47.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 76 ~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 76 AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999988653
No 30
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=98.09 E-value=5.7e-06 Score=71.15 Aligned_cols=50 Identities=18% Similarity=0.442 Sum_probs=45.7
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|++.+.....++++.||++||.||++.++|...|+.++...
T Consensus 79 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999999887543
No 31
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=98.08 E-value=5e-06 Score=71.63 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=49.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++....
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 74 ITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp HCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999876543
No 32
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=98.07 E-value=8.7e-06 Score=67.60 Aligned_cols=50 Identities=32% Similarity=0.478 Sum_probs=46.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 70 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 70 WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999999999999988764
No 33
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.06 E-value=6.7e-06 Score=71.05 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=48.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 73 ~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 73 NDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp TTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999876543
No 34
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=98.06 E-value=8e-06 Score=67.72 Aligned_cols=48 Identities=31% Similarity=0.507 Sum_probs=45.2
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
+.+|||++|+..+......+++.||++||.||++.++|..+|+.++++
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 71 SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999999999999999999999999988865
No 35
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=98.06 E-value=6.1e-06 Score=72.13 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 91 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 91 EKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 46789999999999999999999999999999999999999999999987544
No 36
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=98.05 E-value=5.1e-06 Score=69.23 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=44.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 73 DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999998764
No 37
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.05 E-value=1.1e-05 Score=69.09 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++...
T Consensus 81 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 81 ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 46889999999999999999999999999999999999999999999987654
No 38
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=98.05 E-value=9e-06 Score=71.09 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=46.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+++..
T Consensus 89 ~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 89 LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988654
No 39
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=98.03 E-value=6.3e-06 Score=69.23 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=45.7
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+|||++|+..+.....+++..|+++||.||++.++|..+|+.++++
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 73 DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999999999999988754
No 40
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=98.03 E-value=7.8e-06 Score=71.44 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=48.2
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++....
T Consensus 86 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 86 YELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred cCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 467899999999999999999999999999999999999999999999876544
No 41
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=98.02 E-value=1e-05 Score=71.25 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=48.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 79 LRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999977544
No 42
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=98.02 E-value=1.1e-05 Score=67.59 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=45.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 73 ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999988653
No 43
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=98.02 E-value=4.2e-06 Score=69.77 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=58.0
Q ss_pred chhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC----C
Q 010665 91 MACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK----S 157 (504)
Q Consensus 91 lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~----~ 157 (504)
++.....+.+. .++..+.||++|++||.+|++++ ++|++.+|+.+.....++++.+ +|.||+.. .
T Consensus 5 ~~~d~~~~~l~--~~~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~ 82 (96)
T 3rjp_A 5 LVLNPQNRSVN--RGDDEISLTKREYDLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESY 82 (96)
T ss_dssp SEEETTTTEEE--ETTEEEECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCCTTSCCS
T ss_pred EEEECCCCEEE--ECCEEEEcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcccCCCCe
Confidence 33444566676 67888999999999999999987 8999999998777788999999 68888765 3
Q ss_pred CCCcccccC
Q 010665 158 LVPVTEAQG 166 (504)
Q Consensus 158 ~~~~~~~~~ 166 (504)
|......||
T Consensus 83 I~tv~g~GY 91 (96)
T 3rjp_A 83 IQTVRGMGY 91 (96)
T ss_dssp SEEETTTEE
T ss_pred EEEeCCeee
Confidence 444444454
No 44
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.02 E-value=7e-06 Score=69.30 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=46.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 79 TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999988764
No 45
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.02 E-value=1.2e-05 Score=69.54 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=48.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 79 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 79 QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999999999999876543
No 46
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=98.02 E-value=5e-06 Score=71.12 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....+++..||++||.||++.++|..+|+.++++...
T Consensus 76 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 76 GGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp TTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999999999987644
No 47
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.02 E-value=1.3e-05 Score=70.04 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+.+.+.....
T Consensus 86 ~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3heb_A 86 HTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSVM 139 (152)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTTS
T ss_pred cccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999999999999999999997765443
No 48
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=98.01 E-value=3.5e-06 Score=71.68 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=46.8
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++....
T Consensus 71 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 71 RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp TTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 467899999999999999999999999999999999999999999999876554
No 49
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.00 E-value=4.2e-06 Score=70.35 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=46.7
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 74 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 74 TRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp TTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999999999999998764
No 50
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=97.99 E-value=3.6e-06 Score=76.85 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=47.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
..+.+|||++|++.+.....+|++.||++||.||++.++|..+|+.++++..
T Consensus 76 ~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 76 LQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp HCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999999999988876543
No 51
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=97.99 E-value=7.3e-06 Score=69.41 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=44.3
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~-~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++|+..+.....++++.||++||.||+ +.++|...|+.++++.
T Consensus 76 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 76 RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp TTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred cCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 46789999999999999999999999999999999 9999999999998654
No 52
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.98 E-value=1.1e-05 Score=68.29 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++...
T Consensus 84 ~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 84 KRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999999999999877643
No 53
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=97.98 E-value=1.4e-05 Score=68.24 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=46.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+..+.....++++.|+++||.||++.++|..+|++++.....
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 5789999999999999999999999999999999999999999998876543
No 54
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=97.97 E-value=6.8e-06 Score=72.69 Aligned_cols=49 Identities=31% Similarity=0.508 Sum_probs=45.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|+.+|+.+++
T Consensus 108 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 108 FDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred hCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999998775
No 55
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.97 E-value=1.4e-05 Score=68.55 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=47.2
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++..
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999987753
No 56
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.96 E-value=1.6e-05 Score=68.52 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=46.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++..
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999987653
No 57
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=97.96 E-value=6.8e-06 Score=68.72 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=39.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+|||++|++.+.....++++.||++||.||++.++|..+|+.++++
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 73 LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp TTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred ccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 5689999999999998899999999999999999999999999988754
No 58
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=97.96 E-value=4.3e-06 Score=74.69 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=57.9
Q ss_pred chhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC----C
Q 010665 91 MACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK----S 157 (504)
Q Consensus 91 lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~----~ 157 (504)
++.....+.+. .++..+.||++|++||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+.. .
T Consensus 43 l~ld~~~~~v~--~~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~ 120 (133)
T 3q9v_A 43 LTLDPQKRLVT--YKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGYGL 120 (133)
T ss_dssp EEEETTTTEEE--ETTEECCCCHHHHHHHHHHTTSTTCEEEHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHTTCTTC
T ss_pred EEEECCCCEEE--ECCEEEEcCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhccCCCCe
Confidence 33344466777 78889999999999999999997 8999999998877778899998 68888763 3
Q ss_pred CCCcccccC
Q 010665 158 LVPVTEAQG 166 (504)
Q Consensus 158 ~~~~~~~~~ 166 (504)
|......||
T Consensus 121 I~Tv~g~GY 129 (133)
T 3q9v_A 121 LRTVRGVGY 129 (133)
T ss_dssp EEEETTTEE
T ss_pred EEEECCEEE
Confidence 444444554
No 59
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=97.96 E-value=1.4e-05 Score=70.03 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~G-AdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....+++..| |++||.||++.++|..+|+.++++...
T Consensus 83 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 83 QYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp HCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 45789999999999999999999999 999999999999999999999976543
No 60
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=97.95 E-value=8.9e-06 Score=69.04 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=46.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 75 ~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 75 EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999999999999988754
No 61
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=97.95 E-value=9.4e-06 Score=69.81 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++...
T Consensus 72 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 72 EFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 35689999999999999999999999999999999999999999999876544
No 62
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=97.93 E-value=6.9e-06 Score=71.54 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=59.8
Q ss_pred chhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC-----
Q 010665 91 MACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK----- 156 (504)
Q Consensus 91 lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~----- 156 (504)
++.....+.+. .++..+.||++|+.||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+..
T Consensus 19 ~~ld~~~~~v~--~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~ 96 (120)
T 2z9m_A 19 IVIYPDAYSIK--KRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp EEEEGGGTEEE--ETTEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSSTTSCS
T ss_pred EEEECCCCEEE--ECCEEEeCCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcCCCCCC
Confidence 33344466676 78889999999999999999997 8999999998777788899999 68898763
Q ss_pred CCCCcccccCcc
Q 010665 157 SLVPVTEAQGSE 168 (504)
Q Consensus 157 ~~~~~~~~~~~~ 168 (504)
.|......||.=
T Consensus 97 ~I~tv~g~GY~l 108 (120)
T 2z9m_A 97 YIVTRRGVGYFL 108 (120)
T ss_dssp SEEEETTTEEEE
T ss_pred eEEEcCCcceEE
Confidence 355555566554
No 63
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=97.93 E-value=1.6e-05 Score=67.82 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=48.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
+.+|||++|+..+.....++++.|+++||.||++.++|..+|+.++++....
T Consensus 81 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 81 CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 6899999999999999999999999999999999999999999999776543
No 64
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=97.92 E-value=1.8e-05 Score=69.01 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=44.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+|||++|+..+.+...++++.||++||.||+..++|+.+|..+...
T Consensus 88 ~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 88 MRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999999999887643
No 65
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=97.92 E-value=1.3e-05 Score=68.47 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=47.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 78 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999999999999999976544
No 66
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=97.92 E-value=6.8e-06 Score=69.21 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=54.0
Q ss_pred cchhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC
Q 010665 90 YMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 90 ~lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~ 156 (504)
+++.....+.+. .++..+.||++|++||.+|++++ ++|++.+|+.+.....++++.+ +|.||+.+
T Consensus 10 ~~~~d~~~~~v~--~~~~~i~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 83 (102)
T 3zq7_A 10 DVTVDLAARVIH--RGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQD 83 (102)
T ss_dssp SCEEETTTTEEE--ETTEEECCCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCSS
T ss_pred CEEEECCCCEEE--ECCEEEEcCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhcC
Confidence 344445566777 78889999999999999999987 8999999998877778899988 68888764
No 67
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=97.92 E-value=1.7e-05 Score=67.90 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=44.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhhh
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 55 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~-~~~ELl~~I~~lLrr~ 55 (504)
.+|||++|+..+.....++++.||++||.||+ +.++|..+|+.++++.
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999 9999999999988654
No 68
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=97.91 E-value=1e-05 Score=68.65 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=42.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
.+.+|||++|+..+... .+++..|+++||.||++.++|..+|+.++++....
T Consensus 75 ~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 126 (133)
T 3nhm_A 75 LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAE 126 (133)
T ss_dssp TTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhccc
Confidence 56899999999988877 89999999999999999999999999999876543
No 69
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=97.88 E-value=1e-05 Score=68.92 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=46.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
.+.+|||++|+..+......+++.||++||.||++.++|..+|+.++++..
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 73 KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 467999999999998888999999999999999999999999999987654
No 70
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=97.88 E-value=5.3e-06 Score=71.37 Aligned_cols=52 Identities=33% Similarity=0.523 Sum_probs=44.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
+.+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++....
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 126 (140)
T 3n53_A 75 KNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
T ss_dssp TTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHH
Confidence 7899999999999999999999999999999999999999999999876543
No 71
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=97.88 E-value=1.7e-05 Score=72.67 Aligned_cols=50 Identities=6% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
+.+|||++|++.+...+.++++.||++||.||++..+|..+|+.++++..
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 78 PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998886543
No 72
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=97.88 E-value=1.5e-05 Score=68.69 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=56.3
Q ss_pred ccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC----CCCCC
Q 010665 94 IQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ----KSLVP 160 (504)
Q Consensus 94 l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k----~~~~~ 160 (504)
....+.+. .++..+.||++|++||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+. ..|..
T Consensus 14 d~~~~~l~--~~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~I~t 91 (112)
T 2jzy_A 14 DMVRRTVI--RSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHT 91 (112)
T ss_dssp CTTTCCEE--ETTEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTTTTSSCCCEEC
T ss_pred ECCCCEEE--ECCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhcCCCCCCeEEE
Confidence 34456666 67888999999999999999887 8999999998877788999998 6888853 22445
Q ss_pred cccccCc
Q 010665 161 VTEAQGS 167 (504)
Q Consensus 161 ~~~~~~~ 167 (504)
....||.
T Consensus 92 v~g~GY~ 98 (112)
T 2jzy_A 92 VRGAGYV 98 (112)
T ss_dssp CTTTCBE
T ss_pred eCCcceE
Confidence 5555654
No 73
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=97.86 E-value=1.3e-05 Score=68.53 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=56.8
Q ss_pred hccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCCC-----C
Q 010665 93 CIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQKS-----L 158 (504)
Q Consensus 93 ~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~~-----~ 158 (504)
.....+.+. .++..+.||++|++||.+|++|+ ++|++.+|+.+.....++++.+ +|.||+... |
T Consensus 16 ld~~~~~l~--~~~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~~I 93 (110)
T 1opc_A 16 LNLGTREMF--REDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYI 93 (110)
T ss_dssp EETTTTEEE--ETTEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCSCTTSCSSE
T ss_pred EECCCCEEE--ECCEEEEcCHHHHHHHHHHHHcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhcCCCCCCeE
Confidence 334456666 67888999999999999999987 8999999998876788999999 788887632 4
Q ss_pred CCcccccCc
Q 010665 159 VPVTEAQGS 167 (504)
Q Consensus 159 ~~~~~~~~~ 167 (504)
......||.
T Consensus 94 ~tv~g~GY~ 102 (110)
T 1opc_A 94 QTVWGLGYV 102 (110)
T ss_dssp EEETTTEEE
T ss_pred EEeCCCCeE
Confidence 444445554
No 74
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=97.86 E-value=1.4e-05 Score=69.87 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=48.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
.+.+|||++|+..+.....+++..||++||.||++.++|..+|+.++++....
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 129 (153)
T 3cz5_A 77 DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAM 129 (153)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccC
Confidence 57899999999999999999999999999999999999999999998765443
No 75
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=97.85 E-value=2.5e-05 Score=68.46 Aligned_cols=52 Identities=15% Similarity=0.364 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+..+.....+++..|+++||.||++.++|..+|+.++++...
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 73 DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999876543
No 76
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=97.85 E-value=1.5e-05 Score=69.67 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~G-AdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....+++..| +++||.||++.++|..+|+.++++...
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 73 ISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp HCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999 999999999999999999999877544
No 77
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.84 E-value=3.3e-05 Score=65.98 Aligned_cols=47 Identities=26% Similarity=0.407 Sum_probs=43.0
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 9 IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.|||++|+..+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 46888999999999999999999999999999999999999988654
No 78
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=97.83 E-value=1.8e-05 Score=76.99 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=47.8
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
...+|||++|++.+.....+|++.||+|||.||++.++|..+|+.++++....
T Consensus 197 ~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~ 249 (259)
T 3luf_A 197 KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQF 249 (259)
T ss_dssp TTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhhh
Confidence 34799999999999999999999999999999999999999999999876543
No 79
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=97.83 E-value=8.9e-06 Score=70.62 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++..
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 74 LYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp HCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3578999999999988888999999999999999999999999999887653
No 80
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=97.82 E-value=8.4e-06 Score=69.94 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=47.7
Q ss_pred CCCCCcEEEEecCCCHHHHH-HHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVY-KCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~-eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+..... .++..||++||.||++.++|..+|+.++++....
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 77 RTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp GGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred ccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 56789999999998887777 8999999999999999999999999999877543
No 81
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=97.80 E-value=5.7e-06 Score=71.49 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=47.2
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
+.+|||++|+..+...+.+++..||++||.||++.++|..+|+.++++...
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 77 SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 689999999999988889999999999999999999999999999987644
No 82
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=97.80 E-value=3.5e-05 Score=66.02 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=47.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~G-AdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
..+.+|||++|+..+.....+++..| |++||.||++.++|..+|+.++....
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 46889999999999999999999999 99999999999999999999886543
No 83
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=97.79 E-value=1.8e-05 Score=67.86 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=56.3
Q ss_pred hccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC---CCCC
Q 010665 93 CIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK---SLVP 160 (504)
Q Consensus 93 ~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~---~~~~ 160 (504)
.....+.+. .++..+.||++|++||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+.. .|..
T Consensus 19 ~d~~~~~l~--~~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~I~t 96 (110)
T 2pmu_A 19 LDEETHEVW--KAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHT 96 (110)
T ss_dssp EETTTCCEE--ETTEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCCSSSCCEEE
T ss_pred EECCCCEEE--ECCEEEecCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhccCCCCeEEE
Confidence 334456666 67888999999999999999887 8999999999877788999998 68888652 2444
Q ss_pred cccccCc
Q 010665 161 VTEAQGS 167 (504)
Q Consensus 161 ~~~~~~~ 167 (504)
....||.
T Consensus 97 v~g~GY~ 103 (110)
T 2pmu_A 97 LRGVGYV 103 (110)
T ss_dssp ETTTEEE
T ss_pred eCCcceE
Confidence 4445543
No 84
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=97.76 E-value=1.4e-05 Score=67.87 Aligned_cols=63 Identities=10% Similarity=0.186 Sum_probs=52.0
Q ss_pred chhccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 91 MACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 91 lT~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
++.....+.+. .++..+.||++|++||.+|+.|+ ++|++.+|+.+.....++++.+ +|.||+.
T Consensus 14 ~~~d~~~~~l~--~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 14 LSLDPTSHRVM--AGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp EEEETTTTEEE--ETTEECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EEEECCCCEEE--ECCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 33344466676 67888999999999999999887 8999999998776788999998 6888865
No 85
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=97.75 E-value=4.5e-05 Score=66.69 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=48.0
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~G-AdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+.....+++..| |++||.||++.++|..+|+.++++...
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 76 SYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp HCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998 999999999999999999999876543
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.73 E-value=2.5e-05 Score=80.63 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=48.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+||||+|++.+.+...+|++.||+|||.||++.++|..+|+.++.+...
T Consensus 69 ~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 69 NSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSK 121 (368)
T ss_dssp HCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSC
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999999999999999999876543
No 87
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=97.73 E-value=1.1e-05 Score=68.87 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=57.7
Q ss_pred hccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC-----C-
Q 010665 93 CIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK-----S- 157 (504)
Q Consensus 93 ~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~-----~- 157 (504)
.....+.+. .++..+.||++|+.||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+.. .
T Consensus 14 ~d~~~~~l~--~~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~~~ 91 (109)
T 2hqn_A 14 ISPDEEKII--YKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKPLGISTVE 91 (109)
T ss_dssp EETTTTEEE--ETTEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTTTSCCCCEE
T ss_pred EECCCCEEE--ECCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhccccCCCcee
Confidence 334466676 67888999999999999999886 8999999998766788999998 68898764 2
Q ss_pred CCCcccccCc
Q 010665 158 LVPVTEAQGS 167 (504)
Q Consensus 158 ~~~~~~~~~~ 167 (504)
|......||.
T Consensus 92 I~tv~g~GY~ 101 (109)
T 2hqn_A 92 TVRRRGYRFC 101 (109)
T ss_dssp ECSSSEEEEC
T ss_pred EEEeccceeE
Confidence 4555556664
No 88
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=97.72 E-value=1.6e-05 Score=67.27 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=45.7
Q ss_pred CCCCCcEEEEecCCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~-----~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+. ....+++..|+++||.||++.++|..+|+.++.....
T Consensus 71 ~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 71 HKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp TTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred CCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 4578999999999885 7778899999999999999999999999998866543
No 89
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=97.71 E-value=1.6e-05 Score=66.97 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=42.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+... .+++..||++||.||++.++|..+|+..++..
T Consensus 75 ~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 75 EKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp SSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred cCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 68899999999998888 89999999999999999999999999887654
No 90
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=97.70 E-value=5.7e-05 Score=64.87 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMR-GAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~-GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+.....+++.. ||++||.||++.++|..+|+.++++.
T Consensus 70 ~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 70 WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 578999999999998888999986 59999999999999999999988654
No 91
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=97.69 E-value=2.2e-05 Score=68.52 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=43.9
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
.+.+|||++|+..+.....+++..|+++||.||++.++|..+|+.++++....
T Consensus 76 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 76 DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 57899999999999999999999999999999999999999999999876554
No 92
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=97.67 E-value=7.1e-05 Score=64.13 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
+.+|||++++..+.....++++.|+++||.||++.++|..++.....
T Consensus 88 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999766543
No 93
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=97.67 E-value=9.2e-06 Score=69.72 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhccc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 58 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~~ 58 (504)
..+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++.+..
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 78 LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 567899999999998888899999999999999999999999999999876543
No 94
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=97.66 E-value=1.9e-05 Score=69.13 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=56.6
Q ss_pred hccccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCCC-----CC
Q 010665 93 CIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQK-----SL 158 (504)
Q Consensus 93 ~l~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k~-----~~ 158 (504)
.....+.+. .++..+.||++|++||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+.. .|
T Consensus 28 ld~~~~~l~--~~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~~~~~~~~I 105 (121)
T 2hwv_A 28 IHPDAYMVS--KRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYL 105 (121)
T ss_dssp ECSSSSEEE--ETTEEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCSSTTSCSSE
T ss_pred EECCCCEEE--ECCEEEECCHHHHHHHHHHHHcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhhcCCCCCeE
Confidence 334466676 67888999999999999999887 8999999998766778899998 68888754 24
Q ss_pred CCcccccCc
Q 010665 159 VPVTEAQGS 167 (504)
Q Consensus 159 ~~~~~~~~~ 167 (504)
......||.
T Consensus 106 ~tvrg~GY~ 114 (121)
T 2hwv_A 106 VTRRGVGYY 114 (121)
T ss_dssp EEETTTEEE
T ss_pred EEeCCeeEE
Confidence 444455553
No 95
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=97.66 E-value=6.9e-05 Score=78.05 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=46.8
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|++.+.....+|++.||++||.||++.++|+.+|+.++++.
T Consensus 73 ~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 73 TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988654
No 96
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=97.66 E-value=4.3e-05 Score=63.54 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=44.4
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+|||++ +..+.....++++.|+++||.||++.++|..+|+.+++.
T Consensus 78 ~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 78 LKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp TTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred ccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 578999999 888888899999999999999999999999999988754
No 97
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=97.62 E-value=6.4e-05 Score=70.21 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=42.1
Q ss_pred CCCCcEEEEecCC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQD-SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~-d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|++. +...+.++++.|+++||.||++ +|..+|+.++++...
T Consensus 149 ~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 149 GVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp TCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred CCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 5789999999998 8888999999999999999999 999999998876543
No 98
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=97.60 E-value=1.9e-05 Score=68.54 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=49.8
Q ss_pred cccceeeecCCcccccCCHHHHHHHHHHhcCh------hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 95 QSKGEFIEKGSDEQSSCTKPDFEAESAHVEDM------PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 95 ~n~r~v~d~~sg~q~sLTkrE~eILslL~en~------eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
...+.+. .++..+.||++|++||.+|+.++ ++|++.+|+.+.....++++.+ +|.||+.
T Consensus 28 ~~~~~l~--~~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 28 KDSREVY--MHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp TTTTEEE--ETTEEECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEE--ECCEEEecCHHHHHHHHHHHHcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 3456666 67888999999999999999876 8999999998876778899988 6888864
No 99
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=97.60 E-value=0.00012 Score=62.87 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
..+.+|||++|+..+ ...+++..||++||.||++.++|..+|+.++++...
T Consensus 80 ~~~~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 80 FAHKPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp STTCCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 346778999998854 578899999999999999999999999999876644
No 100
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.59 E-value=7.8e-05 Score=72.10 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
.+.+|||++|++.+.....++++.|+++||.||++.++|...|+.++++..
T Consensus 199 ~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 199 GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp HCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999999999999887654
No 101
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.59 E-value=5.3e-05 Score=78.50 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=47.4
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+++|||++|++.+.+...+|++.||+|||.||++.++|..+|+.+++..
T Consensus 69 ~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 69 RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp HCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999988654
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=97.58 E-value=0.00013 Score=72.96 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=44.8
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
.+.+|||++|++.+.....+|++.||+|||.||++.++|+.+|+.+++
T Consensus 91 ~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 91 TRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999987754
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=97.56 E-value=6.3e-06 Score=68.60 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=46.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
.+.+|||++|+..+.....++++.||++||.||++.++|..+|+.++++.
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 73 HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 57899999999998888899999999999999999999999999988653
No 104
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=97.53 E-value=7.6e-05 Score=64.10 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=43.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
.+.+|||++|+..+......++..|+++||.||++.++|..+|+.++++..
T Consensus 75 ~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 75 TRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp TTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred cCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 468999999999877666677777889999999999999999999886543
No 105
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=97.52 E-value=0.00016 Score=61.04 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=39.6
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
+.++||+++..... ...++++.||++||.||++.++|+.+|+.++....
T Consensus 79 ~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 79 NQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp SCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred CCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 45677777766666 78899999999999999999999999998886543
No 106
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=97.51 E-value=6.1e-05 Score=69.44 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=44.9
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 9 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 9 IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
+|||++|++.+.....++++.||++||.||++.++|..+|+.++++..
T Consensus 86 ~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 86 APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999987653
No 107
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=97.46 E-value=5.6e-06 Score=93.24 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCCCCcEEEEecCCC-HHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHHhhhc
Q 010665 5 ICKNIPVIMMSSQDS-VSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWRRQS 56 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d-~~~~~eAL~~GAdDYLvKP~~~~E-Ll~~I~~lLrr~~ 56 (504)
..+++||||+|+.++ .+.+..++..||+|||.||++..| |.++|+.++||+.
T Consensus 82 ~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 82 RQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 356899999999988 888999999999999999999999 8899999998864
No 108
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=97.46 E-value=2.8e-05 Score=64.26 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=40.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
.+.+|||++|+..+.. .+++..|+++||.||++.++|..+|+.++
T Consensus 71 ~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 4789999999987665 77889999999999999999999998765
No 109
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=97.43 E-value=3.6e-05 Score=76.47 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=42.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
++|||++|++.+ ...+|+..||++||.|||++++|+.+|+.++++...
T Consensus 233 ~~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 233 DVPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp TCCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 799999999864 477899999999999999999999999999977543
No 110
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=97.40 E-value=8.2e-05 Score=76.26 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=43.9
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhhhc
Q 010665 5 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQS 56 (504)
Q Consensus 5 ~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~-~~~ELl~~I~~lLrr~~ 56 (504)
..+++|||++|++.+.+.+.+|++.||+|||.||+ ..++|..+|+.++++..
T Consensus 74 ~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 74 TASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp TTCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 46789999999999999999999999999999999 68999999998886543
No 111
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=97.22 E-value=0.00026 Score=63.07 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=39.1
Q ss_pred CcEEEEecCCCHH--HHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHHhhh
Q 010665 9 IPVIMMSSQDSVS--TVYKCMMRGAADYLVKPVR---------RNELRNLWQHVWRRQ 55 (504)
Q Consensus 9 IPIIvLSa~~d~~--~~~eAL~~GAdDYLvKP~~---------~~ELl~~I~~lLrr~ 55 (504)
+|||++++..+.. .+.++++.||++||.||++ .++|+.+|+.++.+.
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~ 156 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVD 156 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSC
T ss_pred ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCC
Confidence 8999999987754 6779999999999999999 677777777776543
No 112
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=97.21 E-value=9.5e-06 Score=71.47 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=37.7
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.++|||++|++++... +.++|+.+||.|||+.++|..+|++++++
T Consensus 78 ~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 78 RNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp TCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred CCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999987654 34679999999999999999999776543
No 113
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=97.19 E-value=8.2e-05 Score=60.62 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 53 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLr 53 (504)
.+.+|||++++..+.. .++..|+++||.||++.++|..+|+.+++
T Consensus 73 ~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 73 DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 3789999999988776 89999999999999999999999987654
No 114
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=97.13 E-value=0.0004 Score=58.39 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=43.6
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+..+.....+++..| +||.||++.++|..+|+.+++....
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 77 DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 5689999999999988888888776 8999999999999999999876544
No 115
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=96.87 E-value=0.0011 Score=68.87 Aligned_cols=51 Identities=24% Similarity=0.409 Sum_probs=46.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
...+|||++|+..+.....+++..|++||+.||+...+|..++..++++..
T Consensus 222 ~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~ 272 (459)
T 1w25_A 222 TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 272 (459)
T ss_dssp GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999988876543
No 116
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=96.66 E-value=0.00065 Score=58.21 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhcc
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 57 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~~ 57 (504)
.+.+|||++|+........ ..|+++||.||++.++|..+|+.++++...
T Consensus 85 ~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 85 TKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCC
Confidence 4689999999876654333 789999999999999999999999866543
No 117
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=96.60 E-value=0.00077 Score=58.07 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=29.9
Q ss_pred CcEEEEec--CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 010665 9 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 49 (504)
Q Consensus 9 IPIIvLSa--~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~ 49 (504)
+|||++++ ..+.....++++.||++||.||++.++|..+++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 89999998 666777889999999999999999777666553
No 118
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=96.58 E-value=0.0035 Score=60.74 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=30.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCH
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR 41 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~ 41 (504)
.+||||+|++.+.+...+|+++||+|||.||+..
T Consensus 74 ~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 74 GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 5899999999999999999999999999999743
No 119
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=96.51 E-value=0.00046 Score=58.88 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=37.9
Q ss_pred CCCCCcEEEEe-cCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 5 ICKNIPVIMMS-SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 5 ~~p~IPIIvLS-a~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
..+.+|||++| +..+... .+++ +++||.||++.++|..+|+.++++.
T Consensus 85 ~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 85 QTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp SSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred hCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 46789999999 8877666 6666 9999999999999999998877543
No 120
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=96.29 E-value=0.0034 Score=64.18 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=39.9
Q ss_pred CcEEEEecCCCH--HHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHHHhh
Q 010665 9 IPVIMMSSQDSV--STVYKCMMRGAADYLVKPVRR---------NELRNLWQHVWRR 54 (504)
Q Consensus 9 IPIIvLSa~~d~--~~~~eAL~~GAdDYLvKP~~~---------~ELl~~I~~lLrr 54 (504)
+|||++|+..+. +...++++.||+|||.||++. ++|+.+|+.+.+.
T Consensus 77 ~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 77 MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 999999998876 458899999999999999983 8888888887754
No 121
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=96.16 E-value=0.00098 Score=68.75 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCCCcEEEEecCCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhhc
Q 010665 6 CKNIPVIMMSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 56 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~-----~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~~ 56 (504)
.+.+|||++|+.++. ....+|+..||++||.||++.++|..+|+.++++..
T Consensus 75 ~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 75 GKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp TCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 456788888888776 678899999999999999999999999999987654
No 122
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=94.95 E-value=0.014 Score=54.02 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHHHhh
Q 010665 6 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP--VRRNELRNLWQHVWRR 54 (504)
Q Consensus 6 ~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP--~~~~ELl~~I~~lLrr 54 (504)
.+..+|++++.....+.+.++++.||++||.|| ++..+|+..|...+..
T Consensus 51 ~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 51 DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp SSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence 455677777777778899999999999999999 7888998888777643
No 123
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.60 E-value=0.018 Score=35.39 Aligned_cols=19 Identities=53% Similarity=0.758 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhccC.....
Q 010665 439 SIQREAALNKFRLKRKDRC..... 457 (504)
Q Consensus 439 ~~~r~~~~~r~~~k~~~r~..... 457 (504)
+..|.+.|+||.+|||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4679999999999999874
No 124
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=92.67 E-value=0.39 Score=41.10 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=45.4
Q ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Q 010665 4 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 55 (504)
Q Consensus 4 ~~~p~IPIIvLSa~~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr~ 55 (504)
+.....-+|++-.--+.+.+++.+..||. ||+.|+.+..|-+.|++.||..
T Consensus 69 k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 69 KSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp TTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred CCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 44566778999999999999999999999 9999999999999999988754
No 125
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=91.25 E-value=0.06 Score=33.51 Aligned_cols=19 Identities=53% Similarity=0.716 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 010665 442 REAALNKFRLKRKDRCYDK 460 (504)
Q Consensus 442 r~~~~~r~~~k~~~r~~~k 460 (504)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5689999999999987654
No 126
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.56 E-value=0.34 Score=49.85 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=43.5
Q ss_pred CCcccccC-CHHHHHHHHHHhcCh------hHHHHHHhCCCCC-CCCcchhhH---hhhhcCCC
Q 010665 104 GSDEQSSC-TKPDFEAESAHVEDM------PDLSRQLWGKSLQ-NDVKMQNHE---ARVNYGQK 156 (504)
Q Consensus 104 ~sg~q~sL-TkrE~eILslL~en~------eeI~~~vW~~~~~-s~~~tvd~~---~~~kl~k~ 156 (504)
.++..+.| |++|++||.+|+.++ ++|++.+|+.... ...++++.+ +|.+|+..
T Consensus 23 ~~g~~v~l~~~k~~~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~ 86 (388)
T 2ff4_A 23 IDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGA 86 (388)
T ss_dssp ETTEECCCCSHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred ECCEEecCCChHHHHHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhccc
Confidence 56777889 999999999999885 8999999998764 456777777 68888764
No 127
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=85.39 E-value=1.1 Score=41.03 Aligned_cols=43 Identities=16% Similarity=0.385 Sum_probs=37.8
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEE------ECCCCHHHHHHHHH
Q 010665 7 KNIPVIMMSSQDSVSTVYKCMMRGAADYL------VKPVRRNELRNLWQ 49 (504)
Q Consensus 7 p~IPIIvLSa~~d~~~~~eAL~~GAdDYL------vKP~~~~ELl~~I~ 49 (504)
.++|||++++....+.+.++++.||++++ .+|+++.+++..++
T Consensus 173 ~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 173 TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLK 221 (237)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHH
Confidence 47999999999999999999999999996 67899988877553
No 128
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=55.23 E-value=19 Score=27.97 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCcccchhhhhhhhcCCC-CCccccccC
Q 010665 459 DKKVRYESRKKLAEQRPR-VKGQFVRQV 485 (504)
Q Consensus 459 ~k~~ry~~rk~~a~~r~r-~kg~f~~~~ 485 (504)
.|+.-|++|-..|-.|+| -.|||....
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 466789999999999999 779998764
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.02 E-value=14 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=29.5
Q ss_pred cccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh
Q 010665 106 DEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA 149 (504)
Q Consensus 106 g~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~ 149 (504)
.....||++|.+||.++++.. .+|.+.+ ....+||..|+
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L-----~iS~~TV~~~~ 65 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGFTNQEIADAL-----HLSKRSIEYSL 65 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTCCHHHHHHHH-----TCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHH
Confidence 345689999999999999776 8888887 45678888884
No 130
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=37.59 E-value=25 Score=33.09 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=31.5
Q ss_pred ccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh
Q 010665 107 EQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA 149 (504)
Q Consensus 107 ~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~ 149 (504)
....||++|.++|.++++.. .||...+ ....+||+.|+
T Consensus 172 ~~~~Lt~re~~vl~~~~~G~s~~eIa~~l-----~is~~tV~~~~ 211 (237)
T 3szt_A 172 SNVRLTARETEMLKWTAVGKTYGEIGLIL-----SIDQRTVKFHI 211 (237)
T ss_dssp GGCCCCHHHHHHHHHHHTTCCHHHHHHHH-----TSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHH-----CCCHHHHHHHH
Confidence 34679999999999998776 8898888 45678999884
No 131
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=29.96 E-value=57 Score=31.34 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCCcEEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 7 KNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 7 p~IPIIvLSa~~d------~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
+++||++|+-... ...+..|.+.|++++++-.+..+++...+..+-
T Consensus 93 ~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 93 PDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp TTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 4799999854432 345567889999999998888887766665543
No 132
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.06 E-value=45 Score=27.46 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=29.3
Q ss_pred cccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh
Q 010665 108 QSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA 149 (504)
Q Consensus 108 q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~ 149 (504)
...||++|.++|.++++.. .||.+.+ ....++|..++
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~~EIA~~L-----~iS~~TV~~~l 70 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLVTEIAKKL-----NRSIKTISSQK 70 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCHHHHHHHH-----TSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHH
Confidence 4579999999999988776 7888887 44567777773
No 133
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=27.83 E-value=41 Score=32.30 Aligned_cols=41 Identities=2% Similarity=-0.022 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh---hhhcC
Q 010665 109 SSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA---RVNYG 154 (504)
Q Consensus 109 ~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~---~~kl~ 154 (504)
..||++|.++|.++++.. .||...+ ....+||+.|+ ..||+
T Consensus 196 ~~Lt~re~~vl~~~~~G~s~~eIA~~l-----~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGKTNWEIATIL-----NISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHTTCCHHHHHHHH-----TSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHHHHHHHHhC
Confidence 479999999999998776 8898888 55678999984 44443
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.83 E-value=72 Score=24.83 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=29.6
Q ss_pred cccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhHh
Q 010665 106 DEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHEA 149 (504)
Q Consensus 106 g~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~~ 149 (504)
.....||++|.+++.++++.. .+|.+.+ .....+|..++
T Consensus 17 ~~~~~Lt~~e~~vl~l~~~g~s~~eIA~~l-----~is~~tV~~~l 57 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIAQGLPNKMIARRL-----DITESTVKVHV 57 (82)
T ss_dssp CCGGGSCHHHHHHHHHHTTTCCHHHHHHHH-----TSCHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHH
Confidence 344579999999999987766 7888887 34567777773
No 135
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.08 E-value=46 Score=31.01 Aligned_cols=42 Identities=7% Similarity=-0.018 Sum_probs=32.7
Q ss_pred cccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 108 QSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 108 q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
...||++|.++|.++++.. .||...+ ....+||+.| +..|||
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~s~~eIa~~l-----~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGKTASVTANLT-----GINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHHHHHHHHhC
Confidence 4579999999999988776 8888888 4567888888 455544
No 136
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=25.61 E-value=77 Score=32.17 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhh
Q 010665 20 VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 54 (504)
Q Consensus 20 ~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lLrr 54 (504)
.+.+.+||++|..=++-||++.+|..+.++.+-+.
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 57789999999999999999999988777665544
No 137
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.30 E-value=51 Score=30.59 Aligned_cols=42 Identities=2% Similarity=-0.150 Sum_probs=32.4
Q ss_pred cccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 108 QSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 108 q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
...||++|.++|.++.+.. .||...+ ....+||+.| ++.|||
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~s~~eIa~~l-----~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGKTMEEIADVE-----GVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTCCHHHHHHHH-----TCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHHHHHHHHhC
Confidence 3469999999999988766 7888888 4566888888 445544
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.24 E-value=69 Score=25.24 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=32.4
Q ss_pred CCcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcC
Q 010665 104 GSDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYG 154 (504)
Q Consensus 104 ~sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~ 154 (504)
.......||++|.+++.++++.. .+|.+.+ .....+|..+ +..||+
T Consensus 23 l~~~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l-----~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 23 RAELYEMLTEREMEILLLIAKGYSNQEIASAS-----HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp --CTGGGCCSHHHHHHHHHHTTCCTTHHHHHH-----TCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHHHHHHHHHC
Confidence 34455689999999999987766 7888887 3456777777 344443
No 139
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=24.21 E-value=80 Score=30.86 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=34.1
Q ss_pred CCCCcEEEEecC------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 010665 6 CKNIPVIMMSSQ------DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 51 (504)
Q Consensus 6 ~p~IPIIvLSa~------~d~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~l 51 (504)
..++|||+|+-. +-...+.+|.++|+++.|+-.+.++|....+..+
T Consensus 95 ~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 95 NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 368999999743 3455678899999999999877777755544443
No 140
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.86 E-value=72 Score=25.57 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=31.0
Q ss_pred CcccccCCHHHHHHHHHHhcCh--hHHHHHHhCCCCCCCCcchhhH---hhhhcCC
Q 010665 105 SDEQSSCTKPDFEAESAHVEDM--PDLSRQLWGKSLQNDVKMQNHE---ARVNYGQ 155 (504)
Q Consensus 105 sg~q~sLTkrE~eILslL~en~--eeI~~~vW~~~~~s~~~tvd~~---~~~kl~k 155 (504)
......||++|.+++.++++.. .+|...+ .....+|..+ +..||+.
T Consensus 22 ~~~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l-----~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 22 QDPLSGLTDQERTLLGLLSEGLTNKQIADRM-----FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -----CCCHHHHHHHHHHHTTCCHHHHHHHH-----TCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHcCCCHHHHHHHH-----CcCHHHHHHHHHHHHHHHcC
Confidence 3445679999999999987766 7888887 4456777777 4555544
No 141
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=23.12 E-value=56 Score=31.87 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=34.6
Q ss_pred CCCcEEEEecCCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Q 010665 7 KNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 52 (504)
Q Consensus 7 p~IPIIvLSa~~d------~~~~~eAL~~GAdDYLvKP~~~~ELl~~I~~lL 52 (504)
.++||++|+-.+- ...+.+|.++|+++.|+-.+.++|....++.+-
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~ 145 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAK 145 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHH
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHH
Confidence 6899999975432 556788999999999998788887655554443
No 142
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=21.72 E-value=1.8e+02 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=32.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEEC------CCCHHHHHHHH
Q 010665 8 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK------PVRRNELRNLW 48 (504)
Q Consensus 8 ~IPIIvLSa~~d~~~~~eAL~~GAdDYLvK------P~~~~ELl~~I 48 (504)
.+|||+..+-.+.+.+.++++.||+.+++= |+++.+++..+
T Consensus 195 ~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l 241 (253)
T 1thf_D 195 TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL 241 (253)
T ss_dssp CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 789999999999999999999999998764 45655554443
Done!