BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010666
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 69 LVPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLS 127
++PY +++ ++ C+SDK+ +R + T + + + P D + + P+++ +++
Sbjct: 432 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRIL 490
Query: 128 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 491 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 550
Query: 188 DLQH 191
+ H
Sbjct: 551 SVGH 554
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 69 LVPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLS 127
++PY +++ ++ C+SDK+ +R + T + + + P D + + P+++ +++
Sbjct: 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRIL 452
Query: 128 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 188 DLQH 191
+ H
Sbjct: 513 SVGH 516
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 69 LVPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLS 127
++PY +++ ++ C+SDK+ +R + T + + + P D + + P+++ +++
Sbjct: 407 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRIL 465
Query: 128 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 466 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 525
Query: 188 DLQH 191
+ H
Sbjct: 526 SVGH 529
>pdb|2Z23|A Chain A, Crystal Structure Of Y.Pestis Oligo Peptide Binding
Protein Oppa With Tri-Lysine Ligand
Length = 517
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 289 ASWC---HSPMAIISLCLLA---QTYHHASAVIQSLVEEDLNVK-----------FLVQL 331
A+WC + P + +++ L T H+ S+V L+E+ L VK +QL
Sbjct: 414 AAWCADYNEPSSFLNMMLSNSSNNTTHYKSSVFDKLIEDTLKVKSEKERADLYQQAEIQL 473
Query: 332 DKLIRLLETPIFAYLRLQLLEP--GRYT 357
DK ++ P+F Y+ +L++P G YT
Sbjct: 474 DKDSAIV--PVFYYVSARLVKPYVGGYT 499
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 70 VPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLSS 128
+PY +++ ++ C+SDK+ +R + T + + + P D + + P+ + +++
Sbjct: 433 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLXTELLKRILD 491
Query: 129 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 188
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 492 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS 551
Query: 189 LQH 191
+ H
Sbjct: 552 VGH 554
>pdb|1AQU|A Chain A, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQU|B Chain B, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQY|A Chain A, Estrogen Sulfotransferase With Pap
pdb|1AQY|B Chain B, Estrogen Sulfotransferase With Pap
pdb|1BO6|A Chain A, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
pdb|1BO6|B Chain B, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
Length = 297
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 21 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAI-TWINEF 61
QE+KN+PS +Y M E ++ + SP F R I W N F
Sbjct: 231 FQEMKNNPSTNYTMMPEEMMNQKVSP--FMRKGIIGDWKNHF 270
>pdb|4AFK|A Chain A, In Meso Structure Of Alginate Transporter, Alge, From
Pseudomonas Aeruginosa, Pao1
Length = 458
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 124 RQLSSEWEATRIEALHWI--STLLNRH 148
R+ S +W+ T IEAL+W +TLLN H
Sbjct: 122 REDSGQWQDTNIEALNWSFETTLLNAH 148
>pdb|3RBH|A Chain A, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|B Chain B, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|C Chain C, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|D Chain D, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
Length = 479
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 124 RQLSSEWEATRIEALHWI--STLLNRH 148
R+ S +W+ T IEAL+W +TLLN H
Sbjct: 143 REDSGQWQDTNIEALNWSFETTLLNAH 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,450,183
Number of Sequences: 62578
Number of extensions: 443176
Number of successful extensions: 1001
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 13
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)