Query 010666
Match_columns 504
No_of_seqs 193 out of 296
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0212 Uncharacterized conser 100.0 6E-129 1E-133 1018.1 42.5 436 1-462 216-657 (675)
2 PF11916 Vac14_Fig4_bd: Vacuol 100.0 3.4E-82 7.5E-87 594.0 20.4 182 206-388 1-182 (182)
3 KOG0212 Uncharacterized conser 100.0 2.5E-27 5.4E-32 251.0 28.9 348 2-364 134-508 (675)
4 PF12348 CLASP_N: CLASP N term 98.6 2.9E-06 6.2E-11 82.4 18.2 175 4-186 18-205 (228)
5 KOG2171 Karyopherin (importin) 98.5 6.8E-05 1.5E-09 87.0 27.5 300 2-322 168-571 (1075)
6 PF01602 Adaptin_N: Adaptin N 98.3 3.7E-05 7.9E-10 83.2 19.5 195 33-240 191-388 (526)
7 KOG2171 Karyopherin (importin) 98.0 0.00016 3.5E-09 84.0 17.2 206 9-216 325-540 (1075)
8 PF01602 Adaptin_N: Adaptin N 98.0 0.0002 4.4E-09 77.5 17.1 243 3-260 124-370 (526)
9 PF12717 Cnd1: non-SMC mitotic 97.9 0.00051 1.1E-08 65.2 16.1 170 6-183 1-175 (178)
10 PRK13800 putative oxidoreducta 97.9 0.0011 2.3E-08 77.7 21.0 193 37-271 687-879 (897)
11 PRK09687 putative lyase; Provi 97.9 0.0028 6E-08 64.7 21.4 154 2-185 32-186 (280)
12 KOG1242 Protein containing ada 97.8 0.00096 2.1E-08 73.5 18.6 236 2-240 225-500 (569)
13 PF12755 Vac14_Fab1_bd: Vacuol 97.8 9.1E-05 2E-09 64.2 7.4 92 10-101 3-94 (97)
14 PTZ00429 beta-adaptin; Provisi 97.7 0.012 2.6E-07 67.7 25.8 248 2-262 114-400 (746)
15 KOG1242 Protein containing ada 97.7 0.0094 2E-07 65.9 23.1 166 34-204 174-343 (569)
16 PRK09687 putative lyase; Provi 97.6 0.005 1.1E-07 62.9 19.1 215 3-256 64-279 (280)
17 PF10508 Proteasom_PSMB: Prote 97.6 0.17 3.7E-06 55.8 32.0 177 2-187 47-231 (503)
18 PRK13800 putative oxidoreducta 97.6 0.017 3.7E-07 67.8 24.9 180 35-257 622-802 (897)
19 KOG1824 TATA-binding protein-i 97.6 0.0016 3.6E-08 74.6 15.6 167 2-168 56-308 (1233)
20 KOG1824 TATA-binding protein-i 97.5 0.017 3.7E-07 66.6 22.4 252 3-260 15-287 (1233)
21 KOG0915 Uncharacterized conser 97.4 0.016 3.4E-07 69.6 22.0 209 4-213 1092-1335(1702)
22 PTZ00429 beta-adaptin; Provisi 97.4 0.02 4.3E-07 66.0 22.6 160 35-204 106-266 (746)
23 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0015 3.3E-08 56.6 8.8 70 114-184 24-93 (97)
24 PF12348 CLASP_N: CLASP N term 97.2 0.0037 8.1E-08 60.6 11.9 149 9-163 70-223 (228)
25 KOG2023 Nuclear transport rece 97.1 0.0039 8.5E-08 69.5 11.9 146 32-178 172-319 (885)
26 PF12717 Cnd1: non-SMC mitotic 97.0 0.055 1.2E-06 51.3 17.2 131 88-226 1-139 (178)
27 PF05918 API5: Apoptosis inhib 97.0 0.088 1.9E-06 58.6 21.1 236 5-262 34-320 (556)
28 cd00020 ARM Armadillo/beta-cat 97.0 0.0076 1.7E-07 51.2 10.2 105 118-222 8-119 (120)
29 KOG2023 Nuclear transport rece 97.0 0.013 2.7E-07 65.6 14.1 207 32-239 391-613 (885)
30 PF12460 MMS19_C: RNAPII trans 97.0 0.076 1.7E-06 57.0 20.0 188 7-201 204-413 (415)
31 KOG0213 Splicing factor 3b, su 97.0 0.048 1E-06 61.8 18.4 175 66-240 790-971 (1172)
32 KOG1061 Vesicle coat complex A 96.9 0.049 1.1E-06 61.8 18.3 255 32-294 119-420 (734)
33 KOG1241 Karyopherin (importin) 96.9 0.01 2.2E-07 67.0 12.7 154 29-187 124-288 (859)
34 KOG1967 DNA repair/transcripti 96.8 0.0092 2E-07 68.6 11.5 172 8-180 828-1017(1030)
35 KOG0915 Uncharacterized conser 96.8 0.016 3.6E-07 69.5 13.9 174 3-176 1008-1190(1702)
36 COG5181 HSH155 U2 snRNP splice 96.7 0.015 3.3E-07 64.5 12.3 235 2-240 530-776 (975)
37 KOG0166 Karyopherin (importin) 96.5 0.078 1.7E-06 58.4 16.1 303 1-320 160-486 (514)
38 KOG0168 Putative ubiquitin fus 96.5 0.3 6.5E-06 56.3 20.7 211 36-256 169-391 (1051)
39 KOG1248 Uncharacterized conser 96.5 0.092 2E-06 62.1 17.0 192 6-197 667-910 (1176)
40 PLN03200 cellulose synthase-in 96.5 0.2 4.3E-06 63.2 20.8 223 2-231 539-772 (2102)
41 PF10508 Proteasom_PSMB: Prote 96.3 0.17 3.8E-06 55.7 17.2 201 39-246 43-261 (503)
42 cd00020 ARM Armadillo/beta-cat 96.2 0.009 1.9E-07 50.7 5.5 112 75-186 7-119 (120)
43 COG5240 SEC21 Vesicle coat com 96.2 0.26 5.6E-06 54.8 17.6 150 112-266 298-449 (898)
44 COG5096 Vesicle coat complex, 96.1 0.61 1.3E-05 53.8 20.8 238 2-257 101-384 (757)
45 KOG1062 Vesicle coat complex A 96.0 0.65 1.4E-05 53.4 19.9 194 4-207 153-398 (866)
46 PF08167 RIX1: rRNA processing 95.9 0.15 3.3E-06 48.0 12.8 137 29-167 20-164 (165)
47 KOG1059 Vesicle coat complex A 95.9 4.4 9.6E-05 46.5 25.4 164 34-206 144-383 (877)
48 KOG0414 Chromosome condensatio 95.7 0.36 7.7E-06 57.4 16.6 184 13-213 893-1111(1251)
49 KOG0213 Splicing factor 3b, su 95.6 1 2.2E-05 51.6 19.2 201 30-234 507-722 (1172)
50 PF13646 HEAT_2: HEAT repeats; 95.6 0.096 2.1E-06 42.7 8.8 85 77-182 1-87 (88)
51 PF08623 TIP120: TATA-binding 95.5 0.45 9.7E-06 45.5 13.9 127 69-199 3-166 (169)
52 KOG1967 DNA repair/transcripti 95.3 0.049 1.1E-06 62.9 8.1 104 2-105 918-1025(1030)
53 KOG2259 Uncharacterized conser 95.2 0.28 6E-06 55.3 13.2 129 68-208 368-500 (823)
54 KOG1062 Vesicle coat complex A 95.1 0.27 5.9E-06 56.3 13.1 157 36-203 315-473 (866)
55 PF03224 V-ATPase_H_N: V-ATPas 95.1 0.21 4.5E-06 51.5 11.3 181 5-188 69-270 (312)
56 KOG2032 Uncharacterized conser 94.9 0.99 2.1E-05 49.5 16.0 100 114-215 255-361 (533)
57 PF13646 HEAT_2: HEAT repeats; 94.8 0.14 3E-06 41.7 7.6 77 3-99 10-87 (88)
58 KOG1820 Microtubule-associated 94.6 2.2 4.9E-05 49.9 18.9 177 16-199 273-457 (815)
59 KOG1020 Sister chromatid cohes 94.5 5.8 0.00013 48.8 22.4 149 48-204 790-938 (1692)
60 KOG2274 Predicted importin 9 [ 94.4 4.3 9.4E-05 47.5 20.2 196 8-206 588-797 (1005)
61 PLN03200 cellulose synthase-in 94.3 17 0.00037 46.8 26.7 225 33-267 487-731 (2102)
62 KOG1248 Uncharacterized conser 94.3 16 0.00035 44.0 25.4 209 52-263 631-867 (1176)
63 PF13513 HEAT_EZ: HEAT-like re 94.1 0.038 8.1E-07 42.0 2.4 53 49-101 2-54 (55)
64 PF12719 Cnd3: Nuclear condens 94.0 1.1 2.5E-05 45.8 13.7 146 56-206 5-165 (298)
65 KOG4653 Uncharacterized conser 93.6 1.8 3.9E-05 50.3 15.3 173 2-175 736-951 (982)
66 PF10274 ParcG: Parkin co-regu 93.0 1.6 3.6E-05 42.2 12.1 99 110-208 31-137 (183)
67 KOG1241 Karyopherin (importin) 93.0 5.7 0.00012 45.8 17.9 174 32-206 496-692 (859)
68 PF04826 Arm_2: Armadillo-like 92.9 2 4.3E-05 43.6 13.2 186 37-227 15-209 (254)
69 PF14663 RasGEF_N_2: Rapamycin 92.9 1.4 3E-05 39.3 10.7 99 156-260 6-111 (115)
70 PF03224 V-ATPase_H_N: V-ATPas 92.7 4.8 0.0001 41.5 16.0 135 31-167 55-200 (312)
71 KOG2160 Armadillo/beta-catenin 92.7 4.7 0.0001 42.6 15.8 198 19-226 66-282 (342)
72 PF10274 ParcG: Parkin co-regu 92.6 0.32 6.8E-06 47.0 6.6 77 28-104 32-109 (183)
73 COG5098 Chromosome condensatio 92.6 1.2 2.7E-05 50.7 11.9 194 32-238 890-1088(1128)
74 COG5181 HSH155 U2 snRNP splice 92.5 4 8.7E-05 46.2 15.5 168 8-186 296-468 (975)
75 PF10521 DUF2454: Protein of u 92.4 2.7 5.9E-05 42.9 13.5 139 51-227 96-254 (282)
76 KOG1061 Vesicle coat complex A 92.2 5.1 0.00011 46.1 16.3 126 35-169 87-213 (734)
77 KOG1240 Protein kinase contain 92.1 4.5 9.7E-05 48.8 16.1 282 2-309 471-793 (1431)
78 KOG1060 Vesicle coat complex A 92.1 19 0.00042 41.9 20.5 134 113-255 283-417 (968)
79 COG5096 Vesicle coat complex, 92.1 29 0.00063 40.5 26.8 159 29-201 50-211 (757)
80 PF04118 Dopey_N: Dopey, N-ter 91.9 4.1 8.8E-05 42.5 14.2 126 50-184 113-251 (307)
81 KOG4524 Uncharacterized conser 91.8 9.4 0.0002 45.1 18.0 77 123-199 809-890 (1014)
82 PF13513 HEAT_EZ: HEAT-like re 91.7 0.38 8.3E-06 36.3 4.9 54 132-185 2-55 (55)
83 PF14500 MMS19_N: Dos2-interac 91.6 6.8 0.00015 39.9 15.2 162 2-163 8-255 (262)
84 PF02985 HEAT: HEAT repeat; I 91.6 0.25 5.3E-06 33.6 3.3 30 76-105 1-30 (31)
85 PF05918 API5: Apoptosis inhib 91.4 4.6 0.0001 45.4 14.8 244 3-273 69-385 (556)
86 PF13001 Ecm29: Proteasome sta 91.3 8.5 0.00018 42.6 16.8 257 2-273 32-369 (501)
87 PF12719 Cnd3: Nuclear condens 91.1 20 0.00043 36.7 18.2 134 5-148 39-186 (298)
88 PF02985 HEAT: HEAT repeat; I 90.9 0.44 9.5E-06 32.3 4.0 29 159-187 1-29 (31)
89 COG5240 SEC21 Vesicle coat com 90.8 11 0.00025 42.4 16.7 223 29-278 298-538 (898)
90 PF14631 FancD2: Fanconi anaem 90.8 2.7 5.8E-05 52.2 13.3 166 16-186 361-541 (1426)
91 KOG1058 Vesicle coat complex C 90.7 22 0.00048 41.3 19.1 199 17-226 226-466 (948)
92 PF05804 KAP: Kinesin-associat 90.1 8.7 0.00019 44.5 15.9 210 33-261 289-522 (708)
93 KOG2274 Predicted importin 9 [ 90.1 47 0.001 39.4 23.2 228 65-295 520-813 (1005)
94 KOG2032 Uncharacterized conser 89.9 10 0.00022 42.0 15.1 212 20-240 240-462 (533)
95 KOG0168 Putative ubiquitin fus 89.7 50 0.0011 39.1 21.5 204 111-364 205-423 (1051)
96 KOG2956 CLIP-associating prote 89.6 11 0.00024 41.5 15.2 165 32-203 327-502 (516)
97 KOG1243 Protein kinase [Genera 89.5 5.3 0.00012 45.6 13.2 136 41-186 261-397 (690)
98 KOG1820 Microtubule-associated 89.3 6.2 0.00013 46.3 14.0 146 2-154 304-451 (815)
99 COG5215 KAP95 Karyopherin (imp 89.0 14 0.0003 41.8 15.6 157 28-187 127-292 (858)
100 KOG1240 Protein kinase contain 88.8 5 0.00011 48.4 12.7 100 35-136 423-527 (1431)
101 KOG1020 Sister chromatid cohes 88.3 11 0.00024 46.5 15.3 145 32-185 814-958 (1692)
102 PF10363 DUF2435: Protein of u 88.2 4.7 0.0001 34.6 9.3 86 118-206 4-89 (92)
103 KOG0166 Karyopherin (importin) 87.2 15 0.00031 41.1 14.5 170 8-187 211-393 (514)
104 PF14664 RICTOR_N: Rapamycin-i 87.1 12 0.00027 39.9 13.7 179 2-186 35-268 (371)
105 KOG2956 CLIP-associating prote 86.9 20 0.00043 39.5 15.0 133 100-237 309-449 (516)
106 KOG4224 Armadillo repeat prote 86.7 2.7 5.9E-05 44.9 8.2 216 3-237 261-486 (550)
107 KOG1060 Vesicle coat complex A 85.9 12 0.00027 43.4 13.4 149 66-223 420-570 (968)
108 KOG2021 Nuclear mRNA export fa 85.4 73 0.0016 37.3 18.9 95 88-185 244-362 (980)
109 PF10363 DUF2435: Protein of u 85.4 2.6 5.7E-05 36.2 6.2 71 2-73 12-82 (92)
110 PF08767 CRM1_C: CRM1 C termin 84.4 56 0.0012 34.1 20.8 142 128-273 131-309 (319)
111 COG1413 FOG: HEAT repeat [Ener 84.4 52 0.0011 33.7 16.8 157 2-189 52-211 (335)
112 TIGR02270 conserved hypothetic 84.3 9.4 0.0002 41.4 11.2 109 2-142 95-203 (410)
113 PF04118 Dopey_N: Dopey, N-ter 84.1 24 0.00051 36.9 13.7 127 66-192 45-174 (307)
114 COG5218 YCG1 Chromosome conden 83.7 11 0.00023 42.7 11.3 146 29-180 44-192 (885)
115 KOG2149 Uncharacterized conser 83.6 10 0.00022 40.8 10.9 119 39-161 63-185 (393)
116 PF12460 MMS19_C: RNAPII trans 82.6 3.5 7.5E-05 44.3 7.1 80 87-166 335-414 (415)
117 PF12830 Nipped-B_C: Sister ch 82.2 37 0.00079 32.5 13.3 128 75-207 8-143 (187)
118 PF10521 DUF2454: Protein of u 81.9 39 0.00084 34.5 14.1 140 32-171 117-278 (282)
119 PF14750 INTS2: Integrator com 81.5 1.4E+02 0.003 36.5 23.3 269 59-341 2-363 (1049)
120 PF04826 Arm_2: Armadillo-like 81.4 7.1 0.00015 39.6 8.5 143 1-150 62-209 (254)
121 KOG1943 Beta-tubulin folding c 81.1 1.4E+02 0.003 36.3 20.1 330 2-339 480-900 (1133)
122 KOG1949 Uncharacterized conser 80.9 97 0.0021 36.2 17.5 196 37-238 177-386 (1005)
123 KOG1993 Nuclear transport rece 80.6 1.3E+02 0.0028 35.6 21.7 158 47-211 540-709 (978)
124 KOG0414 Chromosome condensatio 80.6 11 0.00024 45.5 10.6 150 31-185 267-426 (1251)
125 KOG2025 Chromosome condensatio 79.9 21 0.00044 41.3 12.0 147 30-182 40-188 (892)
126 COG5215 KAP95 Karyopherin (imp 79.3 1.1E+02 0.0024 35.0 17.0 219 32-257 496-786 (858)
127 PF05536 Neurochondrin: Neuroc 78.4 1.2E+02 0.0027 34.1 20.3 239 29-274 93-401 (543)
128 PF14664 RICTOR_N: Rapamycin-i 78.2 27 0.00058 37.4 12.0 116 77-201 27-158 (371)
129 KOG1059 Vesicle coat complex A 78.0 15 0.00032 42.4 10.2 137 117-258 144-308 (877)
130 PF04388 Hamartin: Hamartin pr 77.9 13 0.00028 42.8 10.1 68 116-185 69-138 (668)
131 PF11865 DUF3385: Domain of un 77.9 18 0.00038 34.0 9.4 141 70-225 3-156 (160)
132 KOG1077 Vesicle coat complex A 77.6 71 0.0015 37.2 15.3 200 3-206 158-416 (938)
133 PF04499 SAPS: SIT4 phosphatas 77.5 31 0.00067 38.2 12.5 119 16-152 22-154 (475)
134 PF14745 WASH-7_N: WASH comple 77.4 28 0.0006 39.3 12.4 92 216-353 129-239 (567)
135 KOG4413 26S proteasome regulat 76.8 81 0.0018 33.7 14.5 176 5-186 55-242 (524)
136 PF14500 MMS19_N: Dos2-interac 76.7 91 0.002 31.7 15.7 143 39-186 4-152 (262)
137 PRK07764 DNA polymerase III su 75.6 78 0.0017 37.6 15.7 36 31-66 159-196 (824)
138 KOG0392 SNF2 family DNA-depend 75.6 15 0.00032 44.8 9.7 174 8-187 144-325 (1549)
139 PF08569 Mo25: Mo25-like; Int 75.5 35 0.00076 36.1 11.8 145 74-223 163-332 (335)
140 KOG1078 Vesicle coat complex C 75.2 1.7E+02 0.0036 34.5 17.5 68 81-153 251-318 (865)
141 KOG2160 Armadillo/beta-catenin 73.9 1.3E+02 0.0028 32.1 16.9 127 128-259 94-240 (342)
142 KOG1525 Sister chromatid cohes 73.6 40 0.00087 41.6 13.0 70 116-185 258-327 (1266)
143 PF05004 IFRD: Interferon-rela 73.1 1.2E+02 0.0027 31.5 17.8 98 116-213 42-148 (309)
144 PF06371 Drf_GBD: Diaphanous G 72.7 2.4 5.3E-05 39.6 2.2 92 50-144 92-185 (187)
145 TIGR02270 conserved hypothetic 72.6 25 0.00053 38.2 10.0 89 76-186 87-175 (410)
146 cd00256 VATPase_H VATPase_H, r 72.1 1.6E+02 0.0035 32.4 17.3 189 31-224 50-259 (429)
147 PRK07003 DNA polymerase III su 71.6 15 0.00032 43.1 8.4 68 180-247 266-341 (830)
148 PF00790 VHS: VHS domain; Int 71.5 81 0.0017 28.7 11.9 98 79-186 13-117 (140)
149 cd03569 VHS_Hrs_Vps27p VHS dom 71.0 87 0.0019 28.9 13.1 87 90-186 24-113 (142)
150 PF08623 TIP120: TATA-binding 70.2 25 0.00054 33.7 8.4 80 4-86 38-117 (169)
151 PF14961 BROMI: Broad-minded p 69.6 2.2E+02 0.0047 35.3 17.3 67 116-185 160-229 (1296)
152 PRK14969 DNA polymerase III su 69.4 48 0.001 37.1 11.7 31 217-247 311-341 (527)
153 PRK08691 DNA polymerase III su 69.2 47 0.001 38.6 11.7 71 177-247 263-341 (709)
154 PF13251 DUF4042: Domain of un 67.9 23 0.0005 34.3 7.7 110 133-255 2-127 (182)
155 PF08767 CRM1_C: CRM1 C termin 67.9 1.5E+02 0.0032 31.0 14.3 61 48-108 134-198 (319)
156 PF08064 UME: UME (NUC010) dom 67.7 16 0.00034 32.0 6.1 80 35-120 16-95 (107)
157 KOG0392 SNF2 family DNA-depend 67.6 20 0.00043 43.8 8.4 167 10-186 750-924 (1549)
158 PRK14951 DNA polymerase III su 67.2 1.3E+02 0.0028 34.6 14.7 52 13-64 137-198 (618)
159 PLN03076 ARF guanine nucleotid 67.2 2.2E+02 0.0047 36.9 17.6 188 16-206 1251-1514(1780)
160 PRK14957 DNA polymerase III su 67.1 1.3E+02 0.0028 34.0 14.5 31 216-246 310-340 (546)
161 PF12231 Rif1_N: Rap1-interact 65.7 1.9E+02 0.0041 30.8 17.3 175 50-225 150-351 (372)
162 PF12530 DUF3730: Protein of u 64.9 1.5E+02 0.0033 29.4 16.9 78 160-240 2-82 (234)
163 PRK07994 DNA polymerase III su 64.7 1.3E+02 0.0029 34.7 14.1 54 9-62 128-191 (647)
164 PF12231 Rif1_N: Rap1-interact 62.6 2.2E+02 0.0047 30.3 22.9 174 2-186 2-203 (372)
165 cd03568 VHS_STAM VHS domain fa 62.2 1.3E+02 0.0029 27.8 12.8 75 112-186 32-109 (144)
166 KOG2256 Predicted protein invo 62.0 2E+02 0.0044 33.1 14.6 174 162-352 248-450 (661)
167 PRK14956 DNA polymerase III su 61.4 1.2E+02 0.0027 33.7 12.8 46 157-204 248-293 (484)
168 PRK14949 DNA polymerase III su 60.8 43 0.00093 40.1 9.5 31 217-247 310-340 (944)
169 cd07064 AlkD_like_1 A new stru 60.5 1.7E+02 0.0037 28.5 13.4 74 78-158 118-191 (208)
170 KOG1525 Sister chromatid cohes 60.3 4.3E+02 0.0094 33.1 18.8 116 32-147 257-406 (1266)
171 smart00145 PI3Ka Phosphoinosit 60.3 14 0.00031 35.6 4.8 47 29-80 73-119 (184)
172 KOG0891 DNA-dependent protein 60.0 2E+02 0.0043 38.2 15.6 213 7-227 107-330 (2341)
173 cd00870 PI3Ka_III Phosphoinosi 59.8 13 0.00028 35.4 4.3 49 29-82 75-123 (166)
174 KOG2933 Uncharacterized conser 59.7 2.4E+02 0.0052 29.9 13.7 125 115-239 86-215 (334)
175 PF13251 DUF4042: Domain of un 59.6 1.2E+02 0.0026 29.4 10.9 138 50-187 2-174 (182)
176 PF09324 DUF1981: Domain of un 59.5 32 0.0007 28.9 6.2 68 118-185 18-86 (86)
177 PF14228 MOR2-PAG1_mid: Cell m 59.3 3.9E+02 0.0084 33.1 17.3 82 11-103 488-571 (1120)
178 PF00514 Arm: Armadillo/beta-c 59.1 19 0.00041 25.5 4.1 30 157-186 11-40 (41)
179 PF12783 Sec7_N: Guanine nucle 58.6 1.5E+02 0.0033 27.4 11.7 57 130-186 35-101 (168)
180 PF05004 IFRD: Interferon-rela 57.9 2.4E+02 0.0052 29.3 17.4 152 33-186 85-256 (309)
181 KOG1993 Nuclear transport rece 57.4 4E+02 0.0087 31.8 16.1 183 8-196 630-822 (978)
182 KOG1293 Proteins containing ar 56.7 3.7E+02 0.008 31.2 15.7 139 44-186 341-489 (678)
183 KOG3961 Uncharacterized conser 56.0 24 0.00052 35.4 5.5 78 29-106 109-186 (262)
184 cd03568 VHS_STAM VHS domain fa 55.2 1.2E+02 0.0025 28.1 9.7 80 29-108 32-114 (144)
185 KOG2149 Uncharacterized conser 54.9 1.3E+02 0.0029 32.6 11.2 109 77-186 60-169 (393)
186 cd03561 VHS VHS domain family; 54.4 1.6E+02 0.0036 26.4 13.8 95 82-186 11-111 (133)
187 cd03561 VHS VHS domain family; 54.2 1.6E+02 0.0034 26.5 10.3 80 29-108 32-116 (133)
188 KOG1991 Nuclear transport rece 54.0 4.8E+02 0.01 31.7 24.0 238 4-258 15-307 (1010)
189 PF10350 DUF2428: Putative dea 53.6 2.5E+02 0.0054 28.2 15.2 147 8-170 93-252 (255)
190 cd03567 VHS_GGA VHS domain fam 53.6 1E+02 0.0022 28.5 9.0 76 32-107 36-119 (139)
191 KOG0211 Protein phosphatase 2A 53.1 1.7E+02 0.0037 34.5 12.6 128 4-139 529-657 (759)
192 cd06561 AlkD_like A new struct 53.0 2E+02 0.0043 26.9 13.1 78 78-161 108-185 (197)
193 PF01603 B56: Protein phosphat 52.8 2.9E+02 0.0063 29.8 13.8 176 5-184 145-323 (409)
194 smart00288 VHS Domain present 52.2 1.8E+02 0.0039 26.3 12.1 75 112-186 32-110 (133)
195 PF08713 DNA_alkylation: DNA a 52.2 69 0.0015 30.4 8.1 78 74-158 119-196 (213)
196 PF11099 M11L: Apoptosis regul 51.6 1.1E+02 0.0023 29.4 8.9 93 90-198 30-130 (167)
197 KOG0889 Histone acetyltransfer 50.4 8.9E+02 0.019 33.7 19.8 265 9-328 1249-1529(3550)
198 PF08506 Cse1: Cse1; InterPro 50.3 98 0.0021 33.1 9.5 125 51-178 228-366 (370)
199 cd03567 VHS_GGA VHS domain fam 50.3 2.1E+02 0.0045 26.4 13.7 72 115-186 36-115 (139)
200 PF08064 UME: UME (NUC010) dom 49.2 51 0.0011 28.8 6.0 79 5-85 27-106 (107)
201 KOG3961 Uncharacterized conser 48.6 32 0.00069 34.5 5.1 97 110-206 107-210 (262)
202 PF12397 U3snoRNP10: U3 small 47.8 1.9E+02 0.0042 25.3 10.1 67 116-187 5-74 (121)
203 PF12612 TFCD_C: Tubulin foldi 47.8 1.7E+02 0.0037 28.0 10.0 131 72-213 4-144 (193)
204 PF08568 Kinetochor_Ybp2: Unch 47.5 4.1E+02 0.0089 30.3 14.6 115 29-150 384-511 (633)
205 PRK14965 DNA polymerase III su 47.3 1.2E+02 0.0025 34.5 10.0 12 437-448 449-460 (576)
206 cd00872 PI3Ka_I Phosphoinositi 47.1 26 0.00057 33.5 4.2 34 46-82 83-116 (171)
207 PF13001 Ecm29: Proteasome sta 46.9 40 0.00088 37.4 6.2 69 149-223 14-85 (501)
208 PF01347 Vitellogenin_N: Lipop 46.7 4.6E+02 0.01 29.3 16.4 167 74-253 430-616 (618)
209 KOG1293 Proteins containing ar 46.5 1.4E+02 0.0031 34.3 10.3 128 74-204 418-547 (678)
210 smart00288 VHS Domain present 46.4 2.2E+02 0.0049 25.7 10.0 80 29-108 32-115 (133)
211 PF12830 Nipped-B_C: Sister ch 46.0 2.7E+02 0.0059 26.5 13.7 65 119-187 10-74 (187)
212 PF12765 Cohesin_HEAT: HEAT re 45.4 34 0.00074 25.0 3.7 38 143-182 5-42 (42)
213 cd03569 VHS_Hrs_Vps27p VHS dom 45.4 2.2E+02 0.0047 26.3 9.8 79 30-108 37-118 (142)
214 PRK14960 DNA polymerase III su 45.3 5.7E+02 0.012 30.0 16.8 50 15-64 133-192 (702)
215 KOG2259 Uncharacterized conser 45.3 5.7E+02 0.012 30.0 18.4 260 35-343 235-556 (823)
216 PF08713 DNA_alkylation: DNA a 45.1 2.7E+02 0.0059 26.3 11.6 82 60-151 4-85 (213)
217 cd03572 ENTH_epsin_related ENT 45.1 85 0.0018 28.5 6.9 75 29-103 33-118 (122)
218 KOG1877 Putative transmembrane 45.0 56 0.0012 38.5 7.1 143 29-171 47-206 (819)
219 cd00864 PI3Ka Phosphoinositide 44.8 38 0.00082 31.6 4.8 47 29-80 68-114 (152)
220 PF05804 KAP: Kinesin-associat 44.8 5.8E+02 0.013 30.0 17.6 72 116-189 289-362 (708)
221 PF03378 CAS_CSE1: CAS/CSE pro 44.8 40 0.00086 36.9 5.6 186 64-262 15-232 (435)
222 PF12765 Cohesin_HEAT: HEAT re 44.8 46 0.001 24.3 4.3 37 104-140 5-41 (42)
223 PF00790 VHS: VHS domain; Int 44.3 1.1E+02 0.0023 27.9 7.6 78 29-106 37-120 (140)
224 PF12726 SEN1_N: SEN1 N termin 44.1 5.7E+02 0.012 29.7 18.8 221 16-243 101-358 (727)
225 smart00802 UME Domain in UVSB 44.1 55 0.0012 28.9 5.4 67 48-120 29-95 (107)
226 smart00185 ARM Armadillo/beta- 44.1 31 0.00068 23.5 3.2 29 158-186 12-40 (41)
227 cd00256 VATPase_H VATPase_H, r 44.0 4.8E+02 0.01 28.7 17.4 172 5-187 66-258 (429)
228 PF11698 V-ATPase_H_C: V-ATPas 43.5 59 0.0013 29.5 5.6 72 32-104 41-115 (119)
229 KOG1243 Protein kinase [Genera 43.5 1.4E+02 0.0031 34.5 9.8 165 17-186 256-436 (690)
230 PLN03076 ARF guanine nucleotid 42.8 8.5E+02 0.018 31.9 17.2 175 28-202 1080-1277(1780)
231 PF12333 Ipi1_N: Rix1 complex 42.4 25 0.00054 30.5 3.0 44 65-108 1-44 (102)
232 COG5218 YCG1 Chromosome conden 42.1 2.5E+02 0.0054 32.4 11.1 101 101-202 33-140 (885)
233 cd00197 VHS_ENTH_ANTH VHS, ENT 41.8 2.1E+02 0.0045 24.7 8.8 73 29-101 32-112 (115)
234 PF11701 UNC45-central: Myosin 41.7 37 0.00081 31.6 4.3 105 79-188 7-118 (157)
235 cd08050 TAF6 TATA Binding Prot 41.6 3.3E+02 0.0071 28.8 11.8 122 17-139 195-333 (343)
236 PF12333 Ipi1_N: Rix1 complex 41.2 82 0.0018 27.3 6.0 50 121-170 15-65 (102)
237 PF14228 MOR2-PAG1_mid: Cell m 40.4 2E+02 0.0043 35.5 10.9 56 52-107 934-989 (1120)
238 COG5221 DOP1 Dopey and related 40.3 7.5E+02 0.016 30.8 14.9 114 66-186 137-256 (1618)
239 KOG1077 Vesicle coat complex A 39.9 7E+02 0.015 29.5 14.6 163 7-180 274-467 (938)
240 PF12169 DNA_pol3_gamma3: DNA 39.7 27 0.00059 31.3 2.9 81 162-245 20-111 (143)
241 KOG2025 Chromosome condensatio 39.5 7.1E+02 0.015 29.5 20.7 177 5-186 97-293 (892)
242 PRK12323 DNA polymerase III su 39.2 2.5E+02 0.0054 32.8 10.9 30 217-246 316-345 (700)
243 PF05327 RRN3: RNA polymerase 39.1 5.2E+02 0.011 29.2 13.5 128 110-240 26-169 (563)
244 PF11865 DUF3385: Domain of un 39.0 1.3E+02 0.0028 28.2 7.4 147 28-184 4-154 (160)
245 KOG0211 Protein phosphatase 2A 38.8 7.3E+02 0.016 29.4 22.4 164 36-207 481-647 (759)
246 PF11707 Npa1: Ribosome 60S bi 38.4 4.8E+02 0.01 27.2 16.0 76 132-208 129-218 (330)
247 KOG0891 DNA-dependent protein 38.3 9.6E+02 0.021 32.3 16.8 184 6-200 494-699 (2341)
248 PF08167 RIX1: rRNA processing 38.1 3.4E+02 0.0074 25.4 13.3 75 112-186 20-96 (165)
249 cd00871 PI4Ka Phosphoinositide 38.1 24 0.00053 34.0 2.4 49 30-82 68-116 (175)
250 KOG0803 Predicted E3 ubiquitin 37.2 4E+02 0.0086 33.5 12.8 79 29-107 36-115 (1312)
251 KOG1517 Guanine nucleotide bin 37.0 5.2E+02 0.011 31.9 13.1 173 7-213 571-756 (1387)
252 PF01417 ENTH: ENTH domain; I 36.1 1.6E+02 0.0034 26.1 7.2 84 19-102 22-119 (125)
253 COG5095 TAF6 Transcription ini 35.6 1.2E+02 0.0026 32.1 7.0 15 153-167 272-286 (450)
254 KOG4224 Armadillo repeat prote 35.5 5E+02 0.011 28.4 11.7 185 37-224 129-322 (550)
255 PF00514 Arm: Armadillo/beta-c 35.1 53 0.0011 23.1 3.3 29 75-103 12-40 (41)
256 PF00613 PI3Ka: Phosphoinositi 34.5 17 0.00036 35.1 0.7 48 30-82 75-122 (184)
257 smart00802 UME Domain in UVSB 34.3 1.2E+02 0.0026 26.8 6.0 75 9-85 31-106 (107)
258 KOG0946 ER-Golgi vesicle-tethe 34.0 1.1E+02 0.0023 36.2 7.0 139 57-204 112-264 (970)
259 cd00869 PI3Ka_II Phosphoinosit 33.6 31 0.00067 33.0 2.4 33 47-82 84-116 (169)
260 cd00197 VHS_ENTH_ANTH VHS, ENT 33.5 3.1E+02 0.0068 23.6 11.3 75 112-186 32-114 (115)
261 KOG2753 Uncharacterized conser 32.2 4.7E+02 0.01 28.1 10.7 138 162-319 51-215 (378)
262 PF14911 MMS22L_C: S-phase gen 32.2 6.8E+02 0.015 27.1 15.8 187 32-262 145-350 (373)
263 cd08050 TAF6 TATA Binding Prot 31.2 6.5E+02 0.014 26.5 12.0 30 139-168 239-268 (343)
264 COG5098 Chromosome condensatio 30.4 3.4E+02 0.0074 32.0 10.0 99 87-186 311-414 (1128)
265 PRK14958 DNA polymerase III su 30.3 8.1E+02 0.018 27.4 14.2 50 15-64 134-193 (509)
266 cd07064 AlkD_like_1 A new stru 30.1 5.2E+02 0.011 25.1 15.0 78 72-158 9-87 (208)
267 COG5101 CRM1 Importin beta-rel 29.5 9.9E+02 0.021 28.1 14.0 205 6-216 104-337 (1053)
268 PF14225 MOR2-PAG1_C: Cell mor 29.0 6.4E+02 0.014 25.7 16.5 168 4-186 19-216 (262)
269 PF14961 BROMI: Broad-minded p 29.0 4.8E+02 0.01 32.5 11.3 92 33-127 160-254 (1296)
270 cd03572 ENTH_epsin_related ENT 29.0 2.4E+02 0.0053 25.6 7.2 75 113-187 34-119 (122)
271 KOG2669 Regulator of nuclear m 28.2 1.6E+02 0.0035 31.1 6.7 91 69-169 1-91 (325)
272 KOG1851 Uncharacterized conser 28.0 4.1E+02 0.0088 33.9 10.7 123 57-186 1468-1597(1710)
273 KOG4535 HEAT and armadillo rep 27.8 1.6E+02 0.0034 33.1 6.7 72 128-199 7-88 (728)
274 PF14677 FANCI_S3: FANCI solen 27.6 5.9E+02 0.013 25.3 10.3 119 32-152 69-207 (219)
275 PF01603 B56: Protein phosphat 27.3 1.4E+02 0.0031 32.2 6.4 116 33-153 254-377 (409)
276 PF01347 Vitellogenin_N: Lipop 27.3 7.7E+02 0.017 27.6 12.5 78 55-150 508-590 (618)
277 PF11935 DUF3453: Domain of un 26.9 6.4E+02 0.014 25.1 12.7 145 2-168 2-163 (239)
278 KOG0413 Uncharacterized conser 26.7 1.3E+03 0.028 28.6 15.7 71 32-105 1004-1074(1529)
279 KOG0905 Phosphoinositide 3-kin 26.3 4.1E+02 0.009 33.1 10.1 44 46-92 902-945 (1639)
280 PF14631 FancD2: Fanconi anaem 26.3 6.7E+02 0.015 31.9 12.5 111 33-146 472-584 (1426)
281 cd08812 CARD_RIG-I_like Caspas 25.4 3.2E+02 0.007 23.0 7.0 82 207-313 5-86 (88)
282 KOG1837 Uncharacterized conser 25.3 3.3E+02 0.0071 34.6 9.3 72 115-186 1539-1610(1621)
283 KOG0413 Uncharacterized conser 25.0 8.6E+02 0.019 30.0 12.1 106 76-185 577-683 (1529)
284 PF03378 CAS_CSE1: CAS/CSE pro 24.9 9.4E+02 0.02 26.4 14.2 203 55-257 47-270 (435)
285 PF04286 DUF445: Protein of un 24.9 7.5E+02 0.016 25.2 16.6 71 156-227 274-354 (367)
286 KOG2021 Nuclear mRNA export fa 24.8 4.4E+02 0.0096 31.3 9.7 126 47-181 710-857 (980)
287 PF11935 DUF3453: Domain of un 24.8 7E+02 0.015 24.8 14.7 181 84-270 2-225 (239)
288 KOG2062 26S proteasome regulat 24.5 1.2E+03 0.025 28.0 12.9 109 75-183 554-690 (929)
289 KOG1943 Beta-tubulin folding c 24.3 1.4E+03 0.031 28.2 23.3 105 3-108 687-841 (1133)
290 PRK06647 DNA polymerase III su 24.2 1.1E+03 0.024 26.8 15.3 65 15-82 134-208 (563)
291 PF11698 V-ATPase_H_C: V-ATPas 23.8 3.5E+02 0.0075 24.6 7.2 71 116-186 42-114 (119)
292 PF14677 FANCI_S3: FANCI solen 23.8 7.3E+02 0.016 24.6 11.0 59 165-223 85-150 (219)
293 PF04003 Utp12: Dip2/Utp12 Fam 23.3 99 0.0021 26.4 3.5 67 29-95 27-96 (110)
294 PF10441 Urb2: Urb2/Npa2 famil 23.2 7.1E+02 0.015 24.3 11.3 72 133-204 4-92 (223)
295 cd03565 VHS_Tom1 VHS domain fa 23.1 5.9E+02 0.013 23.3 12.5 73 114-186 35-114 (141)
296 cd03565 VHS_Tom1 VHS domain fa 23.1 5.9E+02 0.013 23.3 10.5 80 29-108 33-119 (141)
297 PF13925 Katanin_con80: con80 22.6 2.5E+02 0.0054 26.4 6.4 45 110-154 59-106 (164)
298 PRK07764 DNA polymerase III su 22.1 9.2E+02 0.02 28.8 12.1 56 93-148 131-195 (824)
299 PF11864 DUF3384: Domain of un 22.0 1.1E+03 0.023 25.9 15.1 173 9-185 272-464 (464)
300 PF04388 Hamartin: Hamartin pr 21.9 5.2E+02 0.011 30.0 9.9 79 275-373 63-142 (668)
301 cd04386 RhoGAP_nadrin RhoGAP_n 21.3 2.3E+02 0.005 27.3 6.0 44 7-53 72-115 (203)
302 PF09245 MA-Mit: Mycoplasma ar 21.1 1E+02 0.0022 29.5 3.3 56 250-322 16-71 (214)
303 PF04078 Rcd1: Cell differenti 21.1 7.3E+02 0.016 25.6 9.6 146 48-226 110-261 (262)
304 KOG0803 Predicted E3 ubiquitin 20.8 1.2E+03 0.027 29.4 13.1 117 66-186 33-152 (1312)
305 cd04398 RhoGAP_fRGD1 RhoGAP_fR 20.7 3.1E+02 0.0067 26.0 6.7 44 7-53 71-114 (192)
306 KOG1087 Cytosolic sorting prot 20.4 9.5E+02 0.021 26.8 11.1 81 115-195 36-124 (470)
307 PF05478 Prominin: Prominin; 20.1 6.6E+02 0.014 29.7 10.5 138 169-327 172-312 (806)
No 1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-129 Score=1018.05 Aligned_cols=436 Identities=48% Similarity=0.763 Sum_probs=407.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCC-chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 79 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~v-D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~ 79 (504)
||+|++++||..|+++|++||+||+.+|.. |+++|+++|+.|+++++|++|..|++||+||+.++|.++++|+|+|+.+
T Consensus 216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~ 295 (675)
T KOG0212|consen 216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA 295 (675)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence 899999999999999999999999988865 9999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCch-HHHHHHHHHHHHHHHhhcCC--CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch
Q 010666 80 ILPCISDKEE-KIRVVARETNEELRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 156 (504)
Q Consensus 80 lLp~Lsd~~~-eIR~~A~~~N~~Ll~li~~~--~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~ 156 (504)
+|||++|.++ .|++.|..+|..+++++... ++.+||++++++|+++++++.++||+|||+|+++|+.++|++++.|.
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~ 375 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN 375 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence 9999999988 59999999999999999865 34499999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHH
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 234 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~L 234 (504)
+.+|++||++|||+||+||.++|+|+|.||. +..++.+|...|+++|+.|+++|+.||++||||||..|+||+||+++
T Consensus 376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI 455 (675)
T ss_pred cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence 9999999999999999999999999999994 45578999999999999999999999999999999999999999999
Q ss_pred HHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHHHHH
Q 010666 235 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAV 314 (504)
Q Consensus 235 a~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~l 314 (504)
|+||+.|+|++|||+|||+||+||+|||||++||++||+ +.+.+++++|+|||++|||||||++|||||||||+|||++
T Consensus 456 a~ILe~e~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~l 534 (675)
T KOG0212|consen 456 ADILEREENLKFASTMVQALNTILLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDL 534 (675)
T ss_pred HHHHhccccchHHHHHHHHHHhhhcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhccCcchhhHHHHhhhcccCCccccc
Q 010666 315 IQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNG 394 (504)
Q Consensus 315 i~~~~~~eitv~~L~qiD~LVqLlESPiF~~LRLqLLep~~~p~L~k~LyglLMlLPQ~s~af~~L~~RL~~v~~~~~~~ 394 (504)
+|.||++|+||++|+|+||||||+|||||||||||||||.+||||.||||||||+||| |+||.||++||+|||++....
T Consensus 535 iq~fa~~eitvd~L~elDKLVqLiEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ-S~AF~tL~~RLqcvp~~~~~~ 613 (675)
T KOG0212|consen 535 IQLFADVEITVDFLVELDKLVQLIESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ-SSAFQTLRHRLQCVPNPVGNQ 613 (675)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhcchHHHHHHHHhccccCchHHHHHHHHHHHccc-HHHHHHHHHHHhcCCchhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999985432
Q ss_pred hhhhccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010666 395 EQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQL 462 (504)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ll~~F~~vq~~~~~~~~~~~~~ 462 (504)
.. +...+.|+ ..+.+..+|+|+||++||++||++|+..+ .||..
T Consensus 614 ~~--~~~~~~p~---------------------s~~~~~~~idf~~LlqhFkavq~~h~~~r-~~R~~ 657 (675)
T KOG0212|consen 614 TI--DAREAVPF---------------------SQKADSPGIDFAELLQHFKAVQNKHLEQR-EQRSG 657 (675)
T ss_pred ch--hhhccCCc---------------------ccccCCCCCChHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 11 11111111 11344578999999999999999998744 44444
No 2
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=3.4e-82 Score=593.98 Aligned_cols=182 Identities=62% Similarity=1.045 Sum_probs=177.6
Q ss_pred cchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHH
Q 010666 206 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFV 285 (504)
Q Consensus 206 dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~ 285 (504)
|+++|++||++||||||..||||+||+++|++|++++|++||++|||+||+||+||||+++||++||+.-.+++++++|.
T Consensus 1 D~~LL~~Rg~~IIRqLC~~L~~E~iy~~la~iL~~~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~~~~~~~~~lF~ 80 (182)
T PF11916_consen 1 DRKLLERRGSFIIRQLCVLLNAERIYRTLASILESEEDLEFASMMVQTLNNILLTSPELFDLRKKLRNLDTDEEGQSLFS 80 (182)
T ss_pred CHhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998333456999999
Q ss_pred HHHHHhccChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHH
Q 010666 286 SLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYG 365 (504)
Q Consensus 286 ~L~~sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVqLlESPiF~~LRLqLLep~~~p~L~k~Lyg 365 (504)
+||+|||||||||+|||||+|||||||++|+.|||+|+|+++|+|||+||||+|||||+|||||||||++||||+|||||
T Consensus 81 ~Ly~sWchNpva~lSLcLl~q~Y~~A~~li~~~~~~e~~~~~L~qiD~LVqLlESPiF~~lRlqLLep~~~p~L~k~Lyg 160 (182)
T PF11916_consen 81 TLYRSWCHNPVATLSLCLLAQAYEHAYNLIQSFAELEVTVDFLVQIDKLVQLLESPIFTYLRLQLLEPEKYPYLYKCLYG 160 (182)
T ss_pred HHHHHHhcCHHHHHHHHHHHhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhhhhHHHHHHHhCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCcchhhHHHHhhhcccC
Q 010666 366 LLMLLPQQSAAFKILRTRLKTVP 388 (504)
Q Consensus 366 lLMlLPQ~s~af~~L~~RL~~v~ 388 (504)
|||+||| |+||++|++||+|||
T Consensus 161 LlMlLPQ-s~af~~L~~RL~~vp 182 (182)
T PF11916_consen 161 LLMLLPQ-SSAFNTLRNRLQSVP 182 (182)
T ss_pred HHHHCCC-hHHHHHHHhhcccCC
Confidence 9999999 999999999999998
No 3
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=250.97 Aligned_cols=348 Identities=21% Similarity=0.321 Sum_probs=265.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~--~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~ 79 (504)
-+|++.+||.+|| +||+++|||+. .++++++++||+|.+|++..++.+|.+.++||..+..+|+.+|+.|+|.+++|
T Consensus 134 saDsd~~V~~~ae-LLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldG 212 (675)
T KOG0212|consen 134 SADSDQNVRGGAE-LLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDG 212 (675)
T ss_pred hcCCccccccHHH-HHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHH
Confidence 3799999999998 99999999984 34799999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHH
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI 159 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~l 159 (504)
++.+|+|+.++||.++..+..+|++.|.+.+..+||+++++++..|+.+++++++..||.||.++....|..++.+..++
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~i 292 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGI 292 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhh
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHH----HHHHHHHHHHHHh-----hchhhHHHHHHHHHhhccccchhhhhhHHH--HHHHHhhcCChH
Q 010666 160 FDTLLKALSDPSDE----VVLLVLEVHACIA-----KDLQHFRQLVVFLVHNFRVDNSLLEKRGAL--IIRRLCVLLDAE 228 (504)
Q Consensus 160 fp~LLksLSD~sde----Vv~~~L~LLa~Is-----~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~l--IIRqLC~~L~aE 228 (504)
|.++|++++|..+. +-...-..+..+. +.+-+|.+.|..|.++|+.|+. ++|... ||+.|...-++|
T Consensus 293 l~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~--~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 293 LTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDRE--ETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred hhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHhhCcch
Confidence 99999999997763 2222222333333 2346688999999999999987 999887 999999988874
Q ss_pred ------HHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHH---HHHHhccChHHHH
Q 010666 229 ------RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVS---LYASWCHSPMAII 299 (504)
Q Consensus 229 ------~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~---L~~sWchn~vs~l 299 (504)
.||.+|-.-|++..|. .+......|-.|- .+++-..+|+-|...| ++|.. +.+. --+.=.=
T Consensus 371 l~~h~~~if~tLL~tLsd~sd~-vvl~~L~lla~i~-~s~~~~~~~~fl~sLL------~~f~e~~~~l~~--Rg~lIIR 440 (675)
T KOG0212|consen 371 LLVHNDSIFLTLLKTLSDRSDE-VVLLALSLLASIC-SSSNSPNLRKFLLSLL------EMFKEDTKLLEV--RGNLIIR 440 (675)
T ss_pred hhhhccHHHHHHHHhhcCchhH-HHHHHHHHHHHHh-cCcccccHHHHHHHHH------HHHhhhhHHHHh--hhhHHHH
Confidence 7999999999886663 2223333333332 2333335566665522 11111 0000 0000111
Q ss_pred HHHHHHhhHHHHHHHHHHhhccccch---HHHHHHHHHHHHhhchhhHHHHHHhc--CCCCChhHHHHHH
Q 010666 300 SLCLLAQTYHHASAVIQSLVEEDLNV---KFLVQLDKLIRLLETPIFAYLRLQLL--EPGRYTWLLKALY 364 (504)
Q Consensus 300 sLcLl~q~Ye~A~~li~~~~~~eitv---~~L~qiD~LVqLlESPiF~~LRLqLL--ep~~~p~L~k~Ly 364 (504)
=||++-.+ |+-|..+..+=+-|=+. ...||+=..+ |+-||-.-.||=+|= .-++-..||.|||
T Consensus 441 qlC~lL~a-E~IYr~~a~ILe~e~nl~FAstMV~~Ln~i-LlTStELf~LR~~Lk~lsn~es~~lF~cLy 508 (675)
T KOG0212|consen 441 QLCLLLNA-ERIYRSIADILEREENLKFASTMVQALNTI-LLTSTELFQLRNKLKDLSNEESQNLFCCLY 508 (675)
T ss_pred HHHHHhCH-HHHHHHHHHHHhccccchHHHHHHHHHHhh-hcccHHHHHHHHHHHhccChhhhHHHHHHH
Confidence 35666543 33444333332223232 2334433332 567888888998776 3667888999999
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.61 E-value=2.9e-06 Score=82.44 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=121.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHH-------HHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHH
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRM-------AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI 76 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~i-------I~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~i 76 (504)
|.+=+.|..|-.-|.++++.-. +..+.+.+ +..+...+.+...-+-.+|+.=+..+....+..+-||+..+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNA--PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCC--ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4444566766666666666551 12233333 34455566555566777888888888888888899999999
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhhch---hhh
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI-LSIATRQLSSEWEATRIEALHWISTLLNRHR---TEV 152 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~i-v~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P---~~~ 152 (504)
+..++..++|+..-|++.|.++...+.+.+.- ...+ +..+.....+.+...|..+++|+..+.+..| ..+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 99999999999999999999998887765430 2455 6788888899999999999999999999999 444
Q ss_pred hh--chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 153 LH--FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 153 l~--~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
-. .++.+.+.+.++++|++++|...+-+++..+.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 33 24789999999999999999999999988884
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=6.8e-05 Score=86.99 Aligned_cols=300 Identities=20% Similarity=0.226 Sum_probs=212.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CCCc-----hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PSVD-----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYAD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD-----~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~ 75 (504)
++||+..||..|-..+.-|...+..+ ..++ +|.|++++.+-+...|..+=.-++.=+.||+...|.-+-||+..
T Consensus 168 ~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ 247 (1075)
T KOG2171|consen 168 MTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ 247 (1075)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 57888889999999999999999622 2222 68899999999999999888889999999999999999999999
Q ss_pred HHHHHcccccCCc--hHHHHHHHHHHHHHHHhhcC------------------------------C--------------
Q 010666 76 ILGAILPCISDKE--EKIRVVARETNEELRAIKAD------------------------------P-------------- 109 (504)
Q Consensus 76 iL~~lLp~Lsd~~--~eIR~~A~~~N~~Ll~li~~------------------------------~-------------- 109 (504)
|+...+....+.+ +.+|..|.++...+.+.-.. .
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 9999999999875 78999999998887765210 0
Q ss_pred -------------CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHH
Q 010666 110 -------------ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 176 (504)
Q Consensus 110 -------------~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~ 176 (504)
+...=+..+++.+..++.+++-.-|-|+|-=|.-+-+-+++.|...++.+++.+++-|.|+.+.|.-
T Consensus 328 ~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~ 407 (1075)
T KOG2171|consen 328 AAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRY 407 (1075)
T ss_pred HHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 0001145667788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-----hhhHHHHHH-HHH---hhccccch----------hh-hhhHHHHHHH--------HhhcCCh-
Q 010666 177 LVLEVHACIAKD-----LQHFRQLVV-FLV---HNFRVDNS----------LL-EKRGALIIRR--------LCVLLDA- 227 (504)
Q Consensus 177 ~~L~LLa~Is~~-----~~~F~~fm~-~LL---~lF~~dr~----------LL-e~Rg~lIIRq--------LC~~L~a- 227 (504)
.++..+.+++.+ ++++...+- .|+ +-..+.|. +. ++-|+.|... |-.++..
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999842 122222222 111 11111010 00 1112222221 1111111
Q ss_pred -----HHHHHHHHHhhcccc--ChHHHHHHHHHHHHHhcCch--hHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHH
Q 010666 228 -----ERVYRELSTILEGEA--DLDFACTMVQALNLILLTSS--ELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAI 298 (504)
Q Consensus 228 -----E~Iy~~La~iL~~~~--Dl~F~~~mVq~Ln~iLLTs~--El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~ 298 (504)
|.+-.++|++=..-+ =..+..+.+-.|-.+|.|+. |+.++|.+=-.+ +++
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEc---------------------isl 546 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMEC---------------------LSL 546 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHH---------------------HHH
Confidence 455566666643321 13444566677777777766 888888775442 233
Q ss_pred HHHHHHH-hhHHHHHHHHHHhhccc
Q 010666 299 ISLCLLA-QTYHHASAVIQSLVEED 322 (504)
Q Consensus 299 lsLcLl~-q~Ye~A~~li~~~~~~e 322 (504)
+++..=- +=+++|..+++...+..
T Consensus 547 i~~AVGke~F~~~a~eliqll~~~~ 571 (1075)
T KOG2171|consen 547 IARAVGKEKFLPLAEELIQLLLELQ 571 (1075)
T ss_pred HHHHhhhhhhhHhHHHHHHHHHhhc
Confidence 3433332 23689999999998885
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=3.7e-05 Score=83.18 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=119.2
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 112 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~ 112 (504)
+.++++|...+...+|..|..+++.+..+....+..--. ..++..+.+++.+.++.|.-.|.++-. .+... .
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~---~l~~~---~ 262 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLII---KLSPS---P 262 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSSS---H
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHH---Hhhcc---h
Confidence 444444444445566666666665555443332221100 346666666666555555544444432 22211 1
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhH
Q 010666 113 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF 192 (504)
Q Consensus 113 ~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F 192 (504)
.-+..+++.|...+.++++..|..||++|.++...+|..+. +.+..+- ....|++..|..++++++..++ ++...
T Consensus 263 ~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~---~l~~~~d~~Ir~~~l~lL~~l~-~~~n~ 337 (526)
T PF01602_consen 263 ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILF---FLLYDDDPSIRKKALDLLYKLA-NESNV 337 (526)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHH---HHHCSSSHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhh---eecCCCChhHHHHHHHHHhhcc-cccch
Confidence 13578889999999999999999999999999999988877 3333322 2234889999999999999998 58888
Q ss_pred HHHHHHHHhhc-cccchhhhhhHHHHHHHHhhcCCh--HHHHHHHHHhhcc
Q 010666 193 RQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEG 240 (504)
Q Consensus 193 ~~fm~~LL~lF-~~dr~LLe~Rg~lIIRqLC~~L~a--E~Iy~~La~iL~~ 240 (504)
+.++..|.++. ..+..-.....-.-|+.+|...++ +....++-+++..
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 99999999998 342221233323345555554432 4555566666554
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00016 Score=83.97 Aligned_cols=206 Identities=15% Similarity=0.106 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCc
Q 010666 9 IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE 88 (504)
Q Consensus 9 VR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~ 88 (504)
-...|+.+||+.=..+. +..=++.+.+-+-..++|++..-|..++-=|..+.+=+++.|.+.+|.|++++++.|.|++
T Consensus 325 ~~~~A~~~lDrlA~~L~--g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLG--GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred cHHHHHHHHHHHHhcCC--hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 56678889999877664 3455788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhchhh-hhhchhHHHHHHHHh
Q 010666 89 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKA 166 (504)
Q Consensus 89 ~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~-~l~~~~~lfp~LLks 166 (504)
|.||-+|+++.+.+-.-+...-....-+.+...|..-+.+. +......|-.=+..+.+.+|++ +-+|.|+++.-+|..
T Consensus 403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~ 482 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLL 482 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999998876544432111111233444566666544 3344555555556666666655 557999999955555
Q ss_pred cCC-CCHHHHHHHHHHHHHHhh-----chhhHHHHHHHHHhhccccc--hhhhhhHHH
Q 010666 167 LSD-PSDEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDN--SLLEKRGAL 216 (504)
Q Consensus 167 LSD-~sdeVv~~~L~LLa~Is~-----~~~~F~~fm~~LL~lF~~dr--~LLe~Rg~l 216 (504)
|-+ ....|...++.-++.++. -..||+.+|-.|.+...+-+ .+-+-||..
T Consensus 483 L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgkt 540 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKT 540 (1075)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhH
Confidence 554 567888888888888872 35899999999988776443 344556553
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.00 E-value=0.0002 Score=77.45 Aligned_cols=243 Identities=18% Similarity=0.198 Sum_probs=137.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
+|+++.||..|-.++-.+.+.-+.. +.-. +++.|..-+..+++..+..|+.=+.++ .-.+....++++.+...+..
T Consensus 124 ~~~~~~VRk~A~~~l~~i~~~~p~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~ 199 (526)
T PF01602_consen 124 SDPSPYVRKKAALALLKIYRKDPDL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQ 199 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHHHCHCC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhccCHHH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhh
Confidence 4555555555555555555442211 1111 455555555555555555555555555 33333323455555555555
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhcCCCCCCCh--HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 83 CISDKEEKIRVVARETNEELRAIKADPADGFDV--GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 83 ~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~--~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
.+++.+|-++..+-++... +.. .+.-+. ..+++.+...+.+.+..+..+|.+=+..+....+ ......
T Consensus 200 ~l~~~~~~~q~~il~~l~~---~~~--~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~ 269 (526)
T PF01602_consen 200 LLSDPDPWLQIKILRLLRR---YAP--MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAI 269 (526)
T ss_dssp HHTCCSHHHHHHHHHHHTT---STS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHH
T ss_pred cccccchHHHHHHHHHHHh---ccc--CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhH
Confidence 5555555443222222111 100 011112 3577788888877777788888777775555442 566778
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhch-hhHHHHHHHHHhhcc-ccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIAKDL-QHFRQLVVFLVHNFR-VDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 238 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is~~~-~~F~~fm~~LL~lF~-~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL 238 (504)
+.|.+.|+++++.|.-.+++.+..|+... ..+. .....+.... .+..-...+.--++-.+|..-|.+.|-.+|...+
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYL 348 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 88889999888889999999999998433 2222 2222222223 3334445565558888888888888888888888
Q ss_pred ccccChHHHHHHHHHHHHHhcC
Q 010666 239 EGEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 239 ~~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
.+..|.+|....|..+-.+-..
T Consensus 349 ~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 349 SELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp HHC--HHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhHHHHHHHHHhc
Confidence 5555777877777777655443
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.91 E-value=0.00051 Score=65.15 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc
Q 010666 6 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 85 (504)
Q Consensus 6 n~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls 85 (504)
|+.||+-+-.+++++...-.+. .+..++.+...+..+++.+|.+|+.=+..++. .+++..=+.++..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence 5789999999999998866432 46678899999999999999999988888876 4788888888899999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 86 DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-----SEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 86 d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~-----s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
|++++||..|..+-.++..-.....-.-.+.+++..+...-. ..+.+.|....+-+..+..+ ...-....+++.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~ 152 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLC 152 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHH
Confidence 999999999999988877664221111113444444444432 35677888999998888886 333445555666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHA 183 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa 183 (504)
.-++..-.+.++.+..-.+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 153 QRFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHHHcccccHHHHHHHHHHHH
Confidence 66655544445666655555554
No 10
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.87 E-value=0.0011 Score=77.73 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=119.7
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChH
Q 010666 37 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG 116 (504)
Q Consensus 37 ~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~ 116 (504)
+.|...+.++++.+|..++.+|..+- ... ...++..|.|+++.||..|......+ ..
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~---~~~--------~~~l~~~L~D~d~~VR~~Av~aL~~~----~~-------- 743 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALR---AGD--------AALFAAALGDPDHRVRIEAVRALVSV----DD-------- 743 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhc---cCC--------HHHHHHHhcCCCHHHHHHHHHHHhcc----cC--------
Confidence 45556666677777777777776642 111 12345667788888887777776542 11
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHH
Q 010666 117 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLV 196 (504)
Q Consensus 117 ~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm 196 (504)
...|...+.+++..+|.++...|-.+....+. .++.|+..+.|++++|...++..|+++...+...
T Consensus 744 --~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~---- 809 (897)
T PRK13800 744 --VESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAALAALAELGCPPDDV---- 809 (897)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhH----
Confidence 12355667788888888888888777654432 2667888889999999999999999987543222
Q ss_pred HHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010666 197 VFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLL 271 (504)
Q Consensus 197 ~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L 271 (504)
..+...+..+.. ..| .-.++-|.. ++++.....|...|.+ +|..--...++.|-.+-.+..-...|.+.|
T Consensus 810 ~~l~~aL~d~d~--~VR-~~Aa~aL~~-l~~~~a~~~L~~~L~D-~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 810 AAATAALRASAW--QVR-QGAARALAG-AAADVAVPALVEALTD-PHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHHhcCCCh--HHH-HHHHHHHHh-ccccchHHHHHHHhcC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 224444444443 333 235566654 4666677888888854 565555577888877523333333343333
No 11
>PRK09687 putative lyase; Provisional
Probab=97.86 E-value=0.0028 Score=64.75 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=77.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|++..||..|...|. ++. -+..++.+..-+.+.++..|..++.=|..+-. ++.. .+..+..+.
T Consensus 32 L~d~d~~vR~~A~~aL~----~~~------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-~~~~----~~~a~~~L~ 96 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQ----LRG------GQDVFRLAIELCSSKNPIERDIGADILSQLGM-AKRC----QDNVFNILN 96 (280)
T ss_pred HhCCCHHHHHHHHHHHH----hcC------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cccc----hHHHHHHHH
Confidence 56778888887765543 222 13455556666666777777776644444311 1111 334444444
Q ss_pred cc-ccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 82 PC-ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 82 p~-Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
.. +.|++++||..|..+.+.+-. .........++.+...+.+++..+|.+|..=|-.+- ....+
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~-----~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai 161 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCK-----KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAI 161 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccc-----cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHH
Confidence 44 566667777666666655311 111112344455555555555555555543331110 12234
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
+.|++.|.|++.+|...+..-|..+
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 4555555555555555555555544
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00096 Score=73.53 Aligned_cols=236 Identities=17% Similarity=0.224 Sum_probs=166.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
.+|..++||.+|..+..-.++-.. ..-...+++-++..+....=-+...++.-+..+....|..+--++|+++..+-
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~ls 301 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLS 301 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHH
Confidence 478999999999977776666543 23345566666665543332457788888999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcC----------------CC-------------------CCCChHhHHHHHHHhc
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKAD----------------PA-------------------DGFDVGPILSIATRQL 126 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~----------------~~-------------------~~~d~~~iv~vL~~~L 126 (504)
.-|-|..++||+++.++...+-..+.+ +. +.-.++-|+.+|..-+
T Consensus 302 evl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 302 EVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGL 381 (569)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHH
Confidence 999999999999999998777666553 11 2244667778888877
Q ss_pred CCCCHHH-HHHH-HHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHHHHHHhh
Q 010666 127 SSEWEAT-RIEA-LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHN 202 (504)
Q Consensus 127 ~s~~e~T-Rlaa-L~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm~~LL~l 202 (504)
..-+-.+ |.+| .-|-.--.--.|..+.+|++.++|.+=+.+-|+.+||+..+...+..+-+ ++.+|++.+-.+.+.
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 6333333 4444 46766666668999999999999999999999999999888777755542 466775554444444
Q ss_pred ccccchhhhhhHHH-HHHHHhhcCChHHHHHHHHHhhcc
Q 010666 203 FRVDNSLLEKRGAL-IIRRLCVLLDAERVYRELSTILEG 240 (504)
Q Consensus 203 F~~dr~LLe~Rg~l-IIRqLC~~L~aE~Iy~~La~iL~~ 240 (504)
...+..+...=|.. -+-..|..++-|.+...+++++..
T Consensus 462 ~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~ 500 (569)
T KOG1242|consen 462 LTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILAN 500 (569)
T ss_pred hccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHH
Confidence 43332222222222 566677777777777777777643
No 13
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.76 E-value=9.1e-05 Score=64.17 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCch
Q 010666 10 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE 89 (504)
Q Consensus 10 R~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~ 89 (504)
|.++=-.|...-.-+.+...-.++.|++.++.-+..+|.-+|..|..++..+..+.+..+++|+++|++++.+.++|+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 33333344444333333334457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010666 90 KIRVVARETNEE 101 (504)
Q Consensus 90 eIR~~A~~~N~~ 101 (504)
.||..|+-.+..
T Consensus 83 ~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 83 NVRSAAELLDRL 94 (97)
T ss_pred hHHHHHHHHHHH
Confidence 999999766543
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=97.72 E-value=0.012 Score=67.69 Aligned_cols=248 Identities=18% Similarity=0.189 Sum_probs=158.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc--ccHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV--PYYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll--pylp~iL~~ 79 (504)
|.|+|+-||-.|-. +|..|... .-.+.+++-+...+...++.+|.+|+-=+..+..+.|+.+. .|.+.+..
T Consensus 114 l~d~Np~IRaLALR----tLs~Ir~~--~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~- 186 (746)
T PTZ00429 114 TTNSSPVVRALAVR----TMMCIRVS--SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE- 186 (746)
T ss_pred cCCCCHHHHHHHHH----HHHcCCcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH-
Confidence 56788888877764 33444422 22456777777777777788887777777777777775432 23444333
Q ss_pred HcccccCCchHHHHHHHHHHHH------------------HHHhhcC-----------------CCCCCChHhHHHHHHH
Q 010666 80 ILPCISDKEEKIRVVARETNEE------------------LRAIKAD-----------------PADGFDVGPILSIATR 124 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~------------------Ll~li~~-----------------~~~~~d~~~iv~vL~~ 124 (504)
+|.|+++.|.--|..+..+ |+..+.+ +.+.-+...+++.+..
T Consensus 187 ---LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~ 263 (746)
T PTZ00429 187 ---LLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP 263 (746)
T ss_pred ---HhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4667776655555433221 2222221 2344556789999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhchhhhhh-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhh
Q 010666 125 QLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHN 202 (504)
Q Consensus 125 ~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~l 202 (504)
++.+.+..+-++|.+=+..+....+.++.. ...++-+.++ +|+..++++.-.+|.-+..|. .....|...++.+.-.
T Consensus 264 ~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv-~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~ 342 (746)
T PTZ00429 264 RMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALL-TLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVR 342 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHH-HhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcc
Confidence 999999999999998777775443222222 2223334444 455567788777777777766 3455666654443333
Q ss_pred ccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666 203 FRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 203 F~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
+. |..-...+-=-|+-.||..=|.+.|.++|.+... +.|.+|+..+|+.+..+-+.-+
T Consensus 343 ~~-Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 343 YS-DPPFVKLEKLRLLLKLVTPSVAPEILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred cC-CcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh
Confidence 34 4443444434488899998999999999988775 5789999999999888876544
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0094 Score=65.94 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=126.4
Q ss_pred HHHHHHHHHcCCCChH-HHH-HHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 34 RMAEILVQRAASPDEF-TRL-TAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 34 ~iI~ILv~~l~s~e~~-iRl-taL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
.|+.-|...++..++. .|. ..+.-...+-.++ ...-||+..++..+|-|.+|..++||++|..+-..+|+.+...+
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a- 251 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA- 251 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-
Confidence 3555555666555433 332 4444455555554 66889999999999999999999999999999999999875532
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ch
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DL 189 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~ 189 (504)
+..++..+..-+....=.|+.+++.-+--+-..+|..+-..+..+.|.+-+.|.|..++|...+.+-+-++++ +.
T Consensus 252 ---VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 252 ---VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred ---hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc
Confidence 3455555555555556679999999999999999999999999999999999999999999999999988883 33
Q ss_pred hhHHHHHHHHHhhcc
Q 010666 190 QHFRQLVVFLVHNFR 204 (504)
Q Consensus 190 ~~F~~fm~~LL~lF~ 204 (504)
.....++-.|++-+.
T Consensus 329 ~dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 329 PDIQKIIPTLLDALA 343 (569)
T ss_pred HHHHHHHHHHHHHhc
Confidence 335555555555443
No 16
>PRK09687 putative lyase; Provisional
Probab=97.63 E-value=0.005 Score=62.86 Aligned_cols=215 Identities=15% Similarity=0.094 Sum_probs=157.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQR-AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~-l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
.|+++.||..|-..|+++ .... -...+.++.|..- ...+++.+|..++..+-.+- .. -..+.|..+..+.
T Consensus 64 ~~~d~~vR~~A~~aLg~l----g~~~-~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~---~~-~~~~~~~a~~~l~ 134 (280)
T PRK09687 64 SSKNPIERDIGADILSQL----GMAK-RCQDNVFNILNNLALEDKSACVRASAINATGHRC---KK-NPLYSPKIVEQSQ 134 (280)
T ss_pred hCCCHHHHHHHHHHHHhc----CCCc-cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc---cc-ccccchHHHHHHH
Confidence 588999999998888873 2211 1146788888876 67788999999999887762 22 2234789999999
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
+.+.|++++||..|...... +.-...+..|...+.+++..+|..|..=|-.+- ...+...+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~-----------~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--------~~~~~~~~ 195 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSV-----------INDEAAIPLLINLLKDPNGDVRNWAAFALNSNK--------YDNPDIRE 195 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhc-----------cCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------CCCHHHHH
Confidence 99999999999998888742 223678888999999999989988876555541 12446788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccc
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE 241 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~ 241 (504)
.|.+.|.|++++|...+..-|+++.. ...+..|++....+. + | .-++.=|.. ++.++....|-..+...
T Consensus 196 ~L~~~L~D~~~~VR~~A~~aLg~~~~-----~~av~~Li~~L~~~~--~--~-~~a~~ALg~-ig~~~a~p~L~~l~~~~ 264 (280)
T PRK09687 196 AFVAMLQDKNEEIRIEAIIGLALRKD-----KRVLSVLIKELKKGT--V--G-DLIIEAAGE-LGDKTLLPVLDTLLYKF 264 (280)
T ss_pred HHHHHhcCCChHHHHHHHHHHHccCC-----hhHHHHHHHHHcCCc--h--H-HHHHHHHHh-cCCHhHHHHHHHHHhhC
Confidence 89999999999999999999999853 256666666666543 1 2 124444433 44567888888888777
Q ss_pred cChHHHHHHHHHHHH
Q 010666 242 ADLDFACTMVQALNL 256 (504)
Q Consensus 242 ~Dl~F~~~mVq~Ln~ 256 (504)
.|-++....+..||-
T Consensus 265 ~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 265 DDNEIITKAIDKLKR 279 (280)
T ss_pred CChhHHHHHHHHHhc
Confidence 788888888877764
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.61 E-value=0.17 Score=55.85 Aligned_cols=177 Identities=17% Similarity=0.206 Sum_probs=132.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc--HHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~iL~~ 79 (504)
|.+.++|.-..|-.+|++.++...-. .. .+.+.+.|..-+..+++.+|..++.=|...+.-+.. .+.- =++++..
T Consensus 47 L~~~~~e~v~~~~~iL~~~l~~~~~~-~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 47 LNTSNREQVELICDILKRLLSALSPD-SL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNELLPL 123 (503)
T ss_pred HhhcChHHHHHHHHHHHHHHhccCHH-HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCccHHHH
Confidence 34555555455555888888866321 12 788999999999999999999998888777765543 2222 2689999
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI-----LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~i-----v~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
|+.||.|++.+|.+.|.++...+.+.- ..++.+ +..|..-+...++..|..+++=+..+-...|+-+-.
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999998887776521 112333 667777777778889999999888887777665543
Q ss_pred ch-hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 155 FL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 155 ~~-~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
.. .++|+.+++.|.+++.-|...+++++.++++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 22 3699999999999777778899999999994
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.57 E-value=0.017 Score=67.83 Aligned_cols=180 Identities=19% Similarity=0.152 Sum_probs=120.7
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
-++.|+..+..+++.+|..|+.||.++- -|..+..|.+.|.|++++||..|......+.....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------
Confidence 5678889999999999999999999873 26778888899999999999999888765532111
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHH
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQ 194 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~ 194 (504)
-...|...|.++++.+|.+|++||..+..-. ...+++.|.|++++|...+..-|..+...
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~------ 744 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV------ 744 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc------
Confidence 1246777788899999999999998865221 23467788899999999988888887421
Q ss_pred HHHHHHhhccccchhhhhhHHHHHHHHhhcCChHH-HHHHHHHhhccccChHHHHHHHHHHHHH
Q 010666 195 LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER-VYRELSTILEGEADLDFACTMVQALNLI 257 (504)
Q Consensus 195 fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~-Iy~~La~iL~~~~Dl~F~~~mVq~Ln~i 257 (504)
..|+..+..+.. +-| ....+-|+..-+.+. ....|...+.+ +|..--...+..|-.+
T Consensus 745 --~~l~~~l~D~~~--~VR-~~aa~aL~~~~~~~~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 745 --ESVAGAATDENR--EVR-IAVAKGLATLGAGGAPAGDAVRALTGD-PDPLVRAAALAALAEL 802 (897)
T ss_pred --HHHHHHhcCCCH--HHH-HHHHHHHHHhccccchhHHHHHHHhcC-CCHHHHHHHHHHHHhc
Confidence 224444444443 444 334445554433322 24455555543 4444444455555443
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.56 E-value=0.0016 Score=74.61 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=138.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC------------------------------------CCC-------chHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS------------------------------------PSV-------DYGRMAEI 38 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~------------------------------------~~v-------D~~~iI~I 38 (504)
|+|.|.||.+.|-.||+-+.+.|+.. |.. =+.+|.++
T Consensus 56 L~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~ 135 (1233)
T KOG1824|consen 56 LEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPK 135 (1233)
T ss_pred HhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHH
Confidence 78999999999999999777777642 111 15678888
Q ss_pred HHHHcCCCCh--HHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC--------
Q 010666 39 LVQRAASPDE--FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-------- 108 (504)
Q Consensus 39 Lv~~l~s~e~--~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~-------- 108 (504)
|...+.-+++ -++.-++.-|-..++-.|.-+.+|-+.++..++|.+..+...||+-|..+.+.|...+.+
T Consensus 136 l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~ 215 (1233)
T KOG1824|consen 136 LKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIE 215 (1233)
T ss_pred HHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888876654 379999999999999999999999999999999999999999999988887766543332
Q ss_pred ----------------------------CC--CCCChHhHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 109 ----------------------------PA--DGFDVGPILSIATRQL---SSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 109 ----------------------------~~--~~~d~~~iv~vL~~~L---~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
.+ -+-..+.++..+.+++ ..++++-|-.+|+=+-.|+.+.|.+|.+|
T Consensus 216 ~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~ 295 (1233)
T KOG1824|consen 216 HLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPH 295 (1233)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhccc
Confidence 01 1244678899999999 67788899999999999999999999999
Q ss_pred hhHHHHHHHHhcC
Q 010666 156 LNDIFDTLLKALS 168 (504)
Q Consensus 156 ~~~lfp~LLksLS 168 (504)
.+.++..++..++
T Consensus 296 ~pei~~l~l~yis 308 (1233)
T KOG1824|consen 296 VPEIINLCLSYIS 308 (1233)
T ss_pred chHHHHHHHHHhc
Confidence 9999999998876
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.49 E-value=0.017 Score=66.64 Aligned_cols=252 Identities=15% Similarity=0.197 Sum_probs=175.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCC----CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHH
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~----~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~ 78 (504)
+-+++|.|-||- +++++|+++.. .-..++.+.+|+.-+...+.+.|-.||+|+--+++--+++ .+-.++.
T Consensus 15 tssDKDfRfMAt---sDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~~ve 88 (1233)
T KOG1824|consen 15 TSSDKDFRFMAT---SDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLETIVE 88 (1233)
T ss_pred cCCCcchhhhhH---HHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHHHHH
Confidence 457889999874 56666665431 2237899999999999999999999999999998765553 3456777
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC------CHHHHHHHHHHHHHHHhhchhhh
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE------WEATRIEALHWISTLLNRHRTEV 152 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~------~e~TRlaaL~WL~~L~~k~P~~~ 152 (504)
-+.+.+-++.+.-|..+.-........++-..+.+--..|...++..|... ....|..+|+-+-..+.+++.-+
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll 168 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL 168 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence 788886666666666655544433333332122222233444555555422 23379999999999999999999
Q ss_pred hhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hchhhHHHHHHHHHhhccccchhhhhhHHH-----HHHHHhhcC
Q 010666 153 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDLQHFRQLVVFLVHNFRVDNSLLEKRGAL-----IIRRLCVLL 225 (504)
Q Consensus 153 l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is--~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~l-----IIRqLC~~L 225 (504)
-+|..+++-.++..|.-+-..|+.++.-.++.++ -+..-|+..++.|++-+++..+.-+.|-.. |-|+-...+
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~ 248 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRF 248 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999988 478889999999999998775544555222 445444444
Q ss_pred Ch--HHHHHHHHHhhc--cccChHHHHHHHHHHHHHhcC
Q 010666 226 DA--ERVYRELSTILE--GEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 226 ~a--E~Iy~~La~iL~--~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
+. ++|-..+++... +++|=+.-....|.|-..|.-
T Consensus 249 ~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 249 GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 43 456666666552 233444445667777655543
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.016 Score=69.62 Aligned_cols=209 Identities=18% Similarity=0.218 Sum_probs=141.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCC----Cc----hHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHhcCCccccccHH
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPS----VD----YGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 74 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~----vD----~~~iI~ILv~-~l~s~e~~iRltaL~WI~efl~i~~~~llpylp 74 (504)
|=-+.||++|+.+.+-.=|=+++.-+ .+ .+.+.|-|++ .+-++-+++|.++++-+-.+..-+|..+.||+|
T Consensus 1092 DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~ 1171 (1702)
T KOG0915|consen 1092 DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP 1171 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh
Confidence 34467999998544443333344322 23 3444444443 445666999999999999999999999999999
Q ss_pred HHHHHHcccccCCchH-HHHHHHHHHH-------HHHHhhcCC----------CCCCC---hHhHHHHHHHhcC-CCCHH
Q 010666 75 DILGAILPCISDKEEK-IRVVARETNE-------ELRAIKADP----------ADGFD---VGPILSIATRQLS-SEWEA 132 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~~e-IR~~A~~~N~-------~Ll~li~~~----------~~~~d---~~~iv~vL~~~L~-s~~e~ 132 (504)
+++..++...+.-++. +.-.|.+.++ .+...+... -..+| ++++++.+++-.. +-.-.
T Consensus 1172 ~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~ 1251 (1702)
T KOG0915|consen 1172 KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLG 1251 (1702)
T ss_pred HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999886654 3333444332 222222221 12355 3577787887775 44677
Q ss_pred HHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHH---HHHHHHHHHhhchhhHHHHHHHHHh-hccccch
Q 010666 133 TRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL---LVLEVHACIAKDLQHFRQLVVFLVH-NFRVDNS 208 (504)
Q Consensus 133 TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~---~~L~LLa~Is~~~~~F~~fm~~LL~-lF~~dr~ 208 (504)
||+.|=..+..|..++|.+|-||..+++.++++-+.|-++.|.. .|+--|++.++ ++.+.+.+..++. +|..+..
T Consensus 1252 Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss-~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1252 TKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS-PDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred cchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999996665544 23444555543 5566666666654 5554444
Q ss_pred hhhhh
Q 010666 209 LLEKR 213 (504)
Q Consensus 209 LLe~R 213 (504)
+-..+
T Consensus 1331 ~~sis 1335 (1702)
T KOG0915|consen 1331 LKSIS 1335 (1702)
T ss_pred ccchh
Confidence 33444
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=97.43 E-value=0.02 Score=65.96 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
.||.+..-+.+++|.+|-.||+=| -.| ..-..++.++..+-+|++|+++-||+.|.-+-.++.+.-.+ .+.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtL---s~I---r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~ 176 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTM---MCI---RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY 176 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH---HcC---CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence 367777777888888888887732 223 33334556777788888999999999998888887765432 232
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHH
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFR 193 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~ 193 (504)
-...++.|...+.+.+..+...|+.=+.++.+..|.. +......+.-++..|.+-++=-....|++++.-. +++....
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~ 255 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAE 255 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHH
Confidence 3345566666677888888888888888887777654 3455555566666666555544445555554433 2334445
Q ss_pred HHHHHHHhhcc
Q 010666 194 QLVVFLVHNFR 204 (504)
Q Consensus 194 ~fm~~LL~lF~ 204 (504)
.++..+..+++
T Consensus 256 ~il~~l~~~Lq 266 (746)
T PTZ00429 256 TLLTRVLPRMS 266 (746)
T ss_pred HHHHHHHHHhc
Confidence 55666555444
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.29 E-value=0.0015 Score=56.56 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=63.4
Q ss_pred ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010666 114 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 184 (504)
Q Consensus 114 d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~ 184 (504)
.++.+++.+...+.+++.-+|..|.++|..+.+..+.++++|++.+|++|.+..+|+++.|..-+ ++|.+
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 36788998889999999999999999999999999999999999999999999999999987766 55544
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.23 E-value=0.0037 Score=60.65 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHH-HHHHcccccCC
Q 010666 9 IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI-LGAILPCISDK 87 (504)
Q Consensus 9 VR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~i-L~~lLp~Lsd~ 87 (504)
++.++ .++.++-...+..-.--.+.++|.|+.+++.+..++|..|..=|..++.-.+ +.+++ +..+.....+.
T Consensus 70 ~~~A~-~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K 143 (228)
T PF12348_consen 70 SKTAC-QLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK 143 (228)
T ss_dssp HHHHH-HHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S
T ss_pred HHHHH-HHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC
Confidence 45555 4777777777654222368899999999999999999999999999988655 55677 77888889999
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCC----hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHH
Q 010666 88 EEKIRVVARETNEELRAIKADPADGFD----VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 163 (504)
Q Consensus 88 ~~eIR~~A~~~N~~Ll~li~~~~~~~d----~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~L 163 (504)
++.+|..+.+.....+.........+. ++.+++.+...+.+.+.++|-+|-+=+..+++..|+.-...++.+=|..
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~ 223 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNI 223 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----------
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcc
Confidence 999999999888777776653223333 4678899999999999999999999999999999988766555444433
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0039 Score=69.48 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
+.-|||-++++...+.|.+|.-|+.=++.|+-+-...+..++..++..++..=.|++++||+..|+...-|++.-.+ .-
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl 250 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KL 250 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999888877654 22
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhchhh-hhhchhHHHHHHHHhcCCCCHHHHHHH
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALH-WISTLLNRHRTE-VLHFLNDIFDTLLKALSDPSDEVVLLV 178 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~-WL~~L~~k~P~~-~l~~~~~lfp~LLksLSD~sdeVv~~~ 178 (504)
.-.++.||+-+.+.-.+.+|.+-+.|=+ |+..--.--|.. +.+|.+++.|.||..+..++++++.+.
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~ 319 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK 319 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhc
Confidence 3457899998888888888887776665 554443334444 458999999999999988877666554
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.01 E-value=0.055 Score=51.33 Aligned_cols=131 Identities=20% Similarity=0.171 Sum_probs=95.5
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhc
Q 010666 88 EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 167 (504)
Q Consensus 88 ~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksL 167 (504)
++.||.-|..+-++|..-... - +++.+..+...|.++++.+|.+|+.=+.+|.... ++..-+.+|..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~--ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---L--VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---H--HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHH
Confidence 467888888888877665422 1 3566778899999999999999999999998764 5555667788899999
Q ss_pred CCCCHHHHHHHHHHHHHHhh--chhhHHHHHHHHHhhccccc------hhhhhhHHHHHHHHhhcCC
Q 010666 168 SDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDN------SLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 168 SD~sdeVv~~~L~LLa~Is~--~~~~F~~fm~~LL~lF~~dr------~LLe~Rg~lIIRqLC~~L~ 226 (504)
.|++++|...|...+.++.. +++-|...+..++..|.... ..-..+-..|++.|-..++
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 99999999999999999984 36667766677766666431 1122222445555555555
No 27
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.00 E-value=0.088 Score=58.64 Aligned_cols=236 Identities=16% Similarity=0.164 Sum_probs=133.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 84 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~L 84 (504)
.+..++..|.+.+.+|-+..+.- -.+-|+-++.-|...|..+|..|+.=|-.|..-.++ |++++.+++.++|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL 105 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLL 105 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHH
Confidence 34678888888888888877632 245688999999999999999987755555444333 7888888888888
Q ss_pred cCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhchhhhhh----chh
Q 010666 85 SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLH----FLN 157 (504)
Q Consensus 85 sd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~---s~~e~TRlaaL~WL~~L~~k~P~~~l~----~~~ 157 (504)
.-.++.-..++.++...|++. |-..++..+..|+. ++.+.+|..+|..|..=+..-|.+++. .-+
T Consensus 106 ~tdd~~E~~~v~~sL~~ll~~--------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~ 177 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMSLLKQ--------DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE 177 (556)
T ss_dssp T---HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence 877766566665555555543 45677777777776 677889999999997666655555554 222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh------------------------------hchhhHHHHHHHH---Hhhcc
Q 010666 158 DIFDTLLKALSDPSDEVVLLVLEVHACIA------------------------------KDLQHFRQLVVFL---VHNFR 204 (504)
Q Consensus 158 ~lfp~LLksLSD~sdeVv~~~L~LLa~Is------------------------------~~~~~F~~fm~~L---L~lF~ 204 (504)
-+...+.+.|.|-+.+=....+++|.... ++++++++|+.-+ +.+|+
T Consensus 178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs 257 (556)
T PF05918_consen 178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS 257 (556)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence 23444555555544333333334333321 2345555555544 45777
Q ss_pred ccchhhhhhHHHHHHHHhhcCCh-------H---HHHHHHHHhhccccChHHHHHHHHHH-HHHhcCch
Q 010666 205 VDNSLLEKRGALIIRRLCVLLDA-------E---RVYRELSTILEGEADLDFACTMVQAL-NLILLTSS 262 (504)
Q Consensus 205 ~dr~LLe~Rg~lIIRqLC~~L~a-------E---~Iy~~La~iL~~~~Dl~F~~~mVq~L-n~iLLTs~ 262 (504)
.... ++-.+..+|..+=| + ++.+.+|++-..-.+.+ ++.++..+ +.++-.=|
T Consensus 258 ~~v~-----Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 258 RGVS-----SSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp TTB-------HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-
T ss_pred CCCC-----hHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCC
Confidence 6533 34455666655322 2 67788888776656666 55555544 44443334
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.99 E-value=0.0076 Score=51.17 Aligned_cols=105 Identities=21% Similarity=0.134 Sum_probs=79.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh----H
Q 010666 118 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH----F 192 (504)
Q Consensus 118 iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~-~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~----F 192 (504)
+++.+...+.+.+...|..|+..|..+....|.....+.+ +.+|.+++.|+|++++|+..++..+.+++.+... +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6777888888888999999999999999887766666665 9999999999999999999999999999954321 2
Q ss_pred H--HHHHHHHhhccccchhhhhhHHHHHHHHh
Q 010666 193 R--QLVVFLVHNFRVDNSLLEKRGALIIRRLC 222 (504)
Q Consensus 193 ~--~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC 222 (504)
. .++..|+++...+..-....+..++++||
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1 14566666666554333444555666666
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.013 Score=65.61 Aligned_cols=207 Identities=17% Similarity=0.136 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
++.+.|+|.+++.+.+=.+|-..+-=+-.+-+=+-..|+||+|+++..+++||+|..+-||.++|=+...+-+-+.+.+.
T Consensus 391 L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 391 LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 67789999999998776777776666666666677899999999999999999999999999999999999998877555
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCC---HHHHHHHHHHHHHHh--
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS---DEVVLLVLEVHACIA-- 186 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~s---deVv~~~L~LLa~Is-- 186 (504)
.--+.+++.-|...+.+++..++-||--=...|-+.+..++.+|.+.++..|.++++.=- =-|.--|..-+|.-+
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999999999999998887422 223333444444433
Q ss_pred --hchhhHHHHHHHHHh---hcccc----chhhhhhHHHHHHHHhhcCCh--HHHHHHHHHhhc
Q 010666 187 --KDLQHFRQLVVFLVH---NFRVD----NSLLEKRGALIIRRLCVLLDA--ERVYRELSTILE 239 (504)
Q Consensus 187 --~~~~~F~~fm~~LL~---lF~~d----r~LLe~Rg~lIIRqLC~~L~a--E~Iy~~La~iL~ 239 (504)
....|.+..|-=|++ +.+.+ -+||||= +-|-.-|..-.-| +-||..--+++.
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLECl-Ssia~AL~~gF~P~~~~Vy~Rc~~il~ 613 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECL-SSIASALGVGFLPYAQPVYQRCFRILQ 613 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHH-HHHHHHHhccccccCHHHHHHHHHHHH
Confidence 345777777766654 44433 3688886 5565656555433 556666555555
No 30
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.98 E-value=0.076 Score=56.96 Aligned_cols=188 Identities=21% Similarity=0.265 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHc-CCCC---hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 7 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPD---EFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 7 ~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l-~s~e---~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
+.+|.++-.++.-++...+... ++.++++-+.... ...+ .......+.||..=+-+-+. |...++++.++.
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~---~~~~~~~~~L~~ 278 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH---PLATELLDKLLE 278 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHH
Confidence 5566666666666665533221 5666777776666 2222 23456677799877776554 667788888888
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhcC---CCCCCC---------hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh
Q 010666 83 CISDKEEKIRVVARETNEELRAIKAD---PADGFD---------VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 83 ~Lsd~~~eIR~~A~~~N~~Ll~li~~---~~~~~d---------~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
.|+| +++...|.+.-+-++.-..+ ...+.+ |..++..|.+.+.+.+...|-..|.=+.++.+..|.
T Consensus 279 lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 279 LLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred HhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH
Confidence 9998 55555555555544443221 111111 567788888888877777999999999999999998
Q ss_pred hhh-hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ch----hhHHHHHHHHHh
Q 010666 151 EVL-HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DL----QHFRQLVVFLVH 201 (504)
Q Consensus 151 ~~l-~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~----~~F~~fm~~LL~ 201 (504)
.++ ++.+.++|.|+.+|+-++++|...+|+.+..+.. ++ +|...++..|++
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 875 7899999999999999999999999999999884 33 455555555554
No 31
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.96 E-value=0.048 Score=61.84 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=130.7
Q ss_pred CccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010666 66 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 145 (504)
Q Consensus 66 ~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~ 145 (504)
+..+-||+|.|.+-+|.-|.++.+.+|+.|...-..+...++..++..-++..=.+|-+++..+..++==..|.=|.-++
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999887776666666678999999888887555555555555
Q ss_pred hhch-hhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchh------hHHHHHHHHHhhccccchhhhhhHHHHH
Q 010666 146 NRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ------HFRQLVVFLVHNFRVDNSLLEKRGALII 218 (504)
Q Consensus 146 ~k~P-~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~------~F~~fm~~LL~lF~~dr~LLe~Rg~lII 218 (504)
+-.. .+|.+-+.+++|.|.+-|....+.|+.....++..||.+.. ..-...=.|+++++.-.+-...-..--+
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5543 47788999999999999999999999999999999995432 2344555677777655442221111133
Q ss_pred HHHhhcCChHHHHHHHHHhhcc
Q 010666 219 RRLCVLLDAERVYRELSTILEG 240 (504)
Q Consensus 219 RqLC~~L~aE~Iy~~La~iL~~ 240 (504)
--+.+-+||..|.-+|-+=|+.
T Consensus 950 G~IakaIGPqdVLatLlnnLkv 971 (1172)
T KOG0213|consen 950 GYIAKAIGPQDVLATLLNNLKV 971 (1172)
T ss_pred hHHHHhcCHHHHHHHHHhcchH
Confidence 4455667777666666655543
No 32
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.049 Score=61.79 Aligned_cols=255 Identities=17% Similarity=0.187 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC---
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD--- 108 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~--- 108 (504)
.++++.=|+..+...++..|.++..=+.-+-.++++-..+- ++++.+=..++|+++.|-..|..+..+..+.=.+
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~--gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS--GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc--chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 45566666777888899999999999999999988765543 4455555555588888766666655443332211
Q ss_pred ----------------------------------CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 109 ----------------------------------PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 109 ----------------------------------~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
+.+..+..++++-++.++.+.+...-+.+.+-+..+....+.---.
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence 2344677889999999999999999999999999998888874345
Q ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhccccch-hhhhhHHHHHHHHhhcCChHHHHH
Q 010666 155 FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNS-LLEKRGALIIRRLCVLLDAERVYR 232 (504)
Q Consensus 155 ~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~dr~-LLe~Rg~lIIRqLC~~L~aE~Iy~ 232 (504)
+..++-|.++.-++-++ |+---+|.=+..|- ..+++|+.-+..+.--|..--- -++++ .=+|...+.+.++.
T Consensus 277 ~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKl-----eil~~la~~~nl~q 350 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKL-----EILIELANDANLAQ 350 (734)
T ss_pred HHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHH-----HHHHHHhhHhHHHH
Confidence 56677777776666666 66655554444443 4566777655544332221111 12222 45677888999999
Q ss_pred HHHHhhcc--ccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC------CcchhHHHHHHHHHhccC
Q 010666 233 ELSTILEG--EADLDFACTMVQALNLILLTSSELSELRDLLKKSLV------NPAGKDLFVSLYASWCHS 294 (504)
Q Consensus 233 ~La~iL~~--~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~------~~~~~~lF~~L~~sWchn 294 (504)
.+++..+. +.|.+|++..|+.+-.+=+..++-.+.=..|-..++ ..|....|..++|-.--+
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 99998876 679999999999999999988766333333333222 234556666666544333
No 33
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.01 Score=67.03 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=124.7
Q ss_pred CCchHHHHHHHHHHcCCCChH-HH---HHHHHHHHHHHhcCCccccccHHHHHHHHcccccC--CchHHHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEF-TR---LTAITWINEFVKLGGDQLVPYYADILGAILPCISD--KEEKIRVVARETNEEL 102 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~-iR---ltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd--~~~eIR~~A~~~N~~L 102 (504)
.--+|.+|++|+.+....++. .+ +-++..|-+ ++.|+.+.....++|.+|..-.-- +...||-+|.++.-.=
T Consensus 124 ~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice--~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~ns 201 (859)
T KOG1241|consen 124 QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE--DIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNS 201 (859)
T ss_pred hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc--cCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHH
Confidence 445899999999999988765 33 344555543 677888889999999999887765 4567999999998777
Q ss_pred HHhhcCCCCCCChH----hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhH-HHHHHHHhcCCCCHHHHHH
Q 010666 103 RAIKADPADGFDVG----PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND-IFDTLLKALSDPSDEVVLL 177 (504)
Q Consensus 103 l~li~~~~~~~d~~----~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~-lfp~LLksLSD~sdeVv~~ 177 (504)
|...+. .|+++ =++.+.++--.+++++.|.||+.=+.-+...|=+.|.+|+.. +|+.-+..+..+.|+|-..
T Consensus 202 Lef~~~---nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 202 LEFTKA---NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HHHHHH---hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 777653 34443 355667777788999999999999999999998889999887 9999999999999999999
Q ss_pred HHHHHHHHhh
Q 010666 178 VLEVHACIAK 187 (504)
Q Consensus 178 ~L~LLa~Is~ 187 (504)
+++-|+.||+
T Consensus 279 aiEFWstice 288 (859)
T KOG1241|consen 279 AIEFWSTICE 288 (859)
T ss_pred HHHHHHHHHH
Confidence 9999999994
No 34
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.79 E-value=0.0092 Score=68.58 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHhcc----CCC--C-------chHHHHHHHHHHcCCCChHHHHHHHHHHH-HHHhcCCccccccH
Q 010666 8 EIRQQADSALWEFLQEIKN----SPS--V-------DYGRMAEILVQRAASPDEFTRLTAITWIN-EFVKLGGDQLVPYY 73 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~----~~~--v-------D~~~iI~ILv~~l~s~e~~iRltaL~WI~-efl~i~~~~llpyl 73 (504)
++=..|..+++=+.+|+.. ..+ . -|..++|+|+++..+..-..|-.-+.-+. .+=++|...++|.+
T Consensus 828 ~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~ 907 (1030)
T KOG1967|consen 828 STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQF 907 (1030)
T ss_pred cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccch
Confidence 4444555577777776641 111 1 27899999999998544444444444333 34467888999999
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHH-hcCCCC--HHHHHHHHHHHHHHHhhchh
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATR-QLSSEW--EATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~-~L~s~~--e~TRlaaL~WL~~L~~k~P~ 150 (504)
|.++.-+|.+|+=++.++|-.+.++-..++..-..- ..-+++.+|..+.. -..+++ ..+|++||+-|.+|.+.-|.
T Consensus 908 ~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL-~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~ 986 (1030)
T KOG1967|consen 908 PMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL-QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT 986 (1030)
T ss_pred hhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc-chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999988887765331 22445666664333 233333 67899999999999997775
Q ss_pred -hhhhchhHHHHHHHHhcCCCCHHHHHHHHH
Q 010666 151 -EVLHFLNDIFDTLLKALSDPSDEVVLLVLE 180 (504)
Q Consensus 151 -~~l~~~~~lfp~LLksLSD~sdeVv~~~L~ 180 (504)
.+.+|-+..+.+|.|+|.|+---|+..|..
T Consensus 987 ~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 987 KSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred cccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 457899999999999999998888777764
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.016 Score=69.45 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=137.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC-ccccccHHHHHHHHc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-DQLVPYYADILGAIL 81 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~-~~llpylp~iL~~lL 81 (504)
-||++.|+++-.+.=+-+..|=|+-.+-.+-+|..=|+.+|.+.+=-.|-.+=-=+..+++=.| +.+...+|++..++|
T Consensus 1008 yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~f 1087 (1702)
T KOG0915|consen 1008 YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAF 1087 (1702)
T ss_pred cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3999999998777766666665544344477788889999999887777766656666666555 456689999999999
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCC---CCCCChHhHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADP---ADGFDVGPILSIATRQL-----SSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~---~~~~d~~~iv~vL~~~L-----~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
..+.|-.+.||++|.++...+-+++..- .++.+=.+++.++...+ .+.-++.|-.++.=+..|.+-+|..+.
T Consensus 1088 RvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1088 RVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 9999999999999999999888887642 33444455555544444 366788999999999999999999999
Q ss_pred hchhHHHHHHHHhcCCCCHHHHH
Q 010666 154 HFLNDIFDTLLKALSDPSDEVVL 176 (504)
Q Consensus 154 ~~~~~lfp~LLksLSD~sdeVv~ 176 (504)
+|+.++.|.|+...|.-++.|..
T Consensus 1168 P~~~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred chhhHHHHHHHHHccccchHHHH
Confidence 99999999999999987776654
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.74 E-value=0.015 Score=64.52 Aligned_cols=235 Identities=15% Similarity=0.181 Sum_probs=152.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHhcCCccccccHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEF--TRLTAITWINEFVKLGGDQLVPYYADI 76 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD---~~~iI~ILv~~l~s~e~~--iRltaL~WI~efl~i~~~~llpylp~i 76 (504)
++|+.+--|.++..+.++-...|... .+| -...+.-+..-.+.++-. +=+.+.+ ...+++ +...-||+|-|
T Consensus 530 ~~De~ep~r~m~a~~vsri~~~lg~~-~~dErleerl~d~il~Afqeq~~t~~~il~~f~--tv~vsl-~~r~kp~l~~i 605 (975)
T COG5181 530 YSDEPEPYRKMNAGLVSRIFSRLGRL-GFDERLEERLYDSILNAFQEQDTTVGLILPCFS--TVLVSL-EFRGKPHLSMI 605 (975)
T ss_pred ccCCcchhhhhhhHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHHhccccccEEEeccc--ceeeeh-hhccCcchHHH
Confidence 46777777777777777777666544 233 122222222222222110 0000000 001111 33566999999
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch-hhhhhc
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-TEVLHF 155 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P-~~~l~~ 155 (504)
++-+|+.|.++.|++|.-|...-..|...++..++...+...=++|-+.+..+..++==..|+=|.-+++-.. .+|-+-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP 685 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP 685 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence 9999999999999999999999999999998877766677777889999998888876566665655555543 356678
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhch-hh-----HHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHH
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-QH-----FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER 229 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~-~~-----F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~ 229 (504)
+.+++|.|.+-|......|+.....++..||.+. +| .-..-=.|+++++.-.+-...-++--+--+...+||..
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd 765 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD 765 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH
Confidence 8999999999999999999999999999999543 22 33444456666654444222222223333445566666
Q ss_pred HHHHHHHhhcc
Q 010666 230 VYRELSTILEG 240 (504)
Q Consensus 230 Iy~~La~iL~~ 240 (504)
|.-+|-+=|+.
T Consensus 766 vL~~LlnnLkv 776 (975)
T COG5181 766 VLDILLNNLKV 776 (975)
T ss_pred HHHHHHhcchH
Confidence 66665555543
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.078 Score=58.38 Aligned_cols=303 Identities=17% Similarity=0.191 Sum_probs=188.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc--cccccHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD--QLVPYYADI 76 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~--~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~--~llpylp~i 76 (504)
+|..|+.+|+.+|--.|+.+..+=.. ..-++.+ .++-|+..+....+..=+--+.|.-.-+.-++. -=..-...+
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g-~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCG-ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhc-chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 36789999999999888877554321 1123333 344455555555553333446676554444433 222347789
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCCh---HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~---~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
|.++..+|-+.|++|..-|+-+...|-.- +.+.+.+ ..++..|...|.+.+..++..||+=+--+..-.-...-
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALSYLTDG---SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 99999999999999998888776654422 2222222 34567788888888888998888655442222211111
Q ss_pred h-chhHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh-hchhhHHHHHH-----HHHhhccccchhhhhhHHHHHHHHhhcC
Q 010666 154 H-FLNDIFDTLLKALS-DPSDEVVLLVLEVHACIA-KDLQHFRQLVV-----FLVHNFRVDNSLLEKRGALIIRRLCVLL 225 (504)
Q Consensus 154 ~-~~~~lfp~LLksLS-D~sdeVv~~~L~LLa~Is-~~~~~F~~fm~-----~LL~lF~~dr~LLe~Rg~lIIRqLC~~L 225 (504)
. ...+.+|.|...|+ .+.+.+...+-=.+++|. .+.++-+.+|+ .|+...++..-=+.+-....|-++|..=
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 1 23468899989898 556668888999999998 45556655544 4566666554334555677899999888
Q ss_pred ChHHHH--------HHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHH-HHHHhhcCCcchhHHHHHHHHHhccChH
Q 010666 226 DAERVY--------RELSTILEGEADLDFACTMVQALNLILLTSSELSELR-DLLKKSLVNPAGKDLFVSLYASWCHSPM 296 (504)
Q Consensus 226 ~aE~Iy--------~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR-~~L~~~l~~~~~~~lF~~L~~sWchn~v 296 (504)
++|.|+ +.|.+.| ...|.+-+...-..|.+||-..+-..+.. +.+-..++.-+|.+--+.|- .|-.
T Consensus 396 ~~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ---~hen- 470 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQ---SHEN- 470 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhh---cccc-
Confidence 777665 4456666 55788888888899999988776555433 22222111122222222211 1111
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhc
Q 010666 297 AIISLCLLAQTYHHASAVIQSLVE 320 (504)
Q Consensus 297 s~lsLcLl~q~Ye~A~~li~~~~~ 320 (504)
-+-|+.||.||.+|-.
T Consensus 471 --------~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 471 --------EEIYKKAYKIIDTYFS 486 (514)
T ss_pred --------HHHHHHHHHHHHHhcC
Confidence 1348999999998743
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.3 Score=56.32 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=148.9
Q ss_pred HHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCccccccHH--HHHHHHcccccCC-chHHHHHHHHHHHHHHHhhcCCC-
Q 010666 36 AEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISDK-EEKIRVVARETNEELRAIKADPA- 110 (504)
Q Consensus 36 I~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~~llpylp--~iL~~lLp~Lsd~-~~eIR~~A~~~N~~Ll~li~~~~- 110 (504)
+.-|++.++.. ||..|+-+++=|-|.+.++.++-+.-+| .++.++...|+|+ +++|-..|+++...|++..+...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34455555554 9999999999999999999987776433 5778888888885 58999999999999999997632
Q ss_pred CCCChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--
Q 010666 111 DGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-- 187 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-- 187 (504)
..+|++ +|.+|.+.|. =+-...-.-+|.=+..+-+.+|..++. .+-+.+.|..|--=+-.+-..|+...+++|.
T Consensus 249 ~vV~~~-aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEH-AIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeeccc-chHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 234443 4566666664 333444455666667777788877763 2334445555544566778889999999994
Q ss_pred chhhHHHHHHHHH---hhcc-ccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHH
Q 010666 188 DLQHFRQLVVFLV---HNFR-VDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNL 256 (504)
Q Consensus 188 ~~~~F~~fm~~LL---~lF~-~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~ 256 (504)
..+.|+-||+.|. .+|. .|++.+|.+---.-|=.|.......-+..++. .+.+...+|.|+.
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-------~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-------HDLITNIQQLLSV 391 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-------hhHHHHHHHHHhc
Confidence 4677888888883 4554 56889998866677777777777666666664 3445566666654
No 39
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.092 Score=62.09 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=149.9
Q ss_pred cHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 6 SHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 6 n~eVR~~ae~lL~~FLkeIk~~--~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
+..|+.-+=.+|++.+.-+--. ..-....+.++|..-.++....+|.-.+.=++.+++..+.+...++|..+.-++=+
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 3456666666777777661111 11226778999999999999999999999999999999988999999999888888
Q ss_pred ccCCchHHHHHHHHHHHHHHH--hhcCC------------------------------------------CCCCC---hH
Q 010666 84 ISDKEEKIRVVARETNEELRA--IKADP------------------------------------------ADGFD---VG 116 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll~--li~~~------------------------------------------~~~~d---~~ 116 (504)
+-+.+..-|+.|-.+...+++ ...+. .+.+| +.
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 888888889999888877773 22111 11233 45
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh-hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHH
Q 010666 117 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFR 193 (504)
Q Consensus 117 ~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l-~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~ 193 (504)
.+++.++..+.+++.+.+.+|+..|..+..+.|..++ +|.+.++|.++.-+.|....|+.++..++...+. +-++.+
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 7778889999999999999999999999999999876 5888999999997777799999999999888873 344555
Q ss_pred HHHH
Q 010666 194 QLVV 197 (504)
Q Consensus 194 ~fm~ 197 (504)
.|+.
T Consensus 907 ~~~p 910 (1176)
T KOG1248|consen 907 SFLP 910 (1176)
T ss_pred hhCH
Confidence 5544
No 40
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.47 E-value=0.2 Score=63.15 Aligned_cols=223 Identities=13% Similarity=0.143 Sum_probs=144.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc-ccc---cHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVP---YYADIL 77 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~-llp---ylp~iL 77 (504)
|.+++.+++..|-..|..+++.-. .+.++-|+.-+.+.++..+..++.=+..++.+.+.. +.. -..+.+
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d-------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTAD-------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccc-------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 445556666666666666655321 224455666677778777777777555555544332 110 024677
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hchhhhhh-c
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN-RHRTEVLH-F 155 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~-k~P~~~l~-~ 155 (504)
+.+...+.++++++++.|..+...+..--.+..+.+-....+..+...+.+.+..+|..|-.=|..+.. ..++.... -
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v 691 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYA 691 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888889999999999988777664322211222234567778888887777776655544444443 33333333 3
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh---H--HHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHH
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH---F--RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERV 230 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~---F--~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~I 230 (504)
..+..|.|++.|.+++.+|+..++..|+.|.++.+. + ...+.-|+.+.+++..--++-....+.+||..-+.+.+
T Consensus 692 ~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~ 771 (2102)
T PLN03200 692 AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDV 771 (2102)
T ss_pred HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHH
Confidence 457899999999999999999999999999953211 1 34566777777777542233345599999999887765
Q ss_pred H
Q 010666 231 Y 231 (504)
Q Consensus 231 y 231 (504)
+
T Consensus 772 ~ 772 (2102)
T PLN03200 772 L 772 (2102)
T ss_pred H
Confidence 5
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.26 E-value=0.17 Score=55.74 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=131.6
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC---CCC
Q 010666 39 LVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD---GFD 114 (504)
Q Consensus 39 Lv~~l~s~e~~iRltaL~WI~efl~i-~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~---~~d 114 (504)
+...+.+.+.+.=..+..=|..++.- ++..+ .|++...+...|.++++.||..|.+... +.+..... .+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~---~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLG---RIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHhcCCHHHHHHhc
Confidence 55555555543323333444444443 33433 8899999999999999999999888733 33322211 122
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhH
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHF 192 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~-~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F 192 (504)
-..++..+...+.+++..+.-+|.+=|..+-.. +..+-..++ +..+.|-+.++.+++.|.-++++++.+|++ .++.|
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 256788888899999999999999999998864 333322222 235555555555589999999999999983 33333
Q ss_pred H-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh------HHHHHHHHHhhcc-ccChHH
Q 010666 193 R-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEG-EADLDF 246 (504)
Q Consensus 193 ~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a------E~Iy~~La~iL~~-~~Dl~F 246 (504)
. .++..+++.+.+|..|+.--.--++-+|+..=.+ ..|+..+.+.+.+ ++|.++
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~ 261 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRL 261 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcc
Confidence 3 2667778878877777766655688888884322 3577778888765 345433
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.23 E-value=0.009 Score=50.73 Aligned_cols=112 Identities=18% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 75 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
+++..++.+|.++++++|..|..+...+.....+....+--..+++.+...+.+++..+|..|+.=|..+....|.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 35667777888888999999998877665432111111111266788888888888999999988888887766544433
Q ss_pred c-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 155 F-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 155 ~-~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+ ..++++.+++.|.+.+.++...++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 3468999999999999999999999999886
No 43
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.22 E-value=0.26 Score=54.83 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=101.8
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 191 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~ 191 (504)
.-+++++|.+|...|.+....+|.+|++-|..|-.++|.++..-...+ =...+|..-.+-..|+.-|-+-+ +++.
T Consensus 298 ~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev----EsLIsd~Nr~IstyAITtLLKTG-t~e~ 372 (898)
T COG5240 298 SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV----ESLISDENRTISTYAITTLLKTG-TEET 372 (898)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH----HHHhhcccccchHHHHHHHHHcC-chhh
Confidence 346899999999999999999999999999999999999986332221 12234555555555555554443 3444
Q ss_pred HHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChH--HHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHH
Q 010666 192 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSE 266 (504)
Q Consensus 192 F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE--~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~ 266 (504)
.+..|.-+..+-+.-..-.+.=.---+|-||.+.+.+ .+..-|+++|.+|..++|-.-||..+.-+.=..||-.+
T Consensus 373 idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE 449 (898)
T COG5240 373 IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE 449 (898)
T ss_pred HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH
Confidence 4444444443333212111111222578999998886 35567888898899999999999999888777766544
No 44
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.61 Score=53.79 Aligned_cols=238 Identities=18% Similarity=0.185 Sum_probs=131.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHH-HHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI-LGAI 80 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~i-L~~l 80 (504)
|.|||+.||..|- |||..|+.+ -=.+.+++-+..++..+.+.+|.+|.-=|..+.++.++ ++++. +.-+
T Consensus 101 l~d~N~~iR~~Al----R~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~----l~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFAL----RTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD----LYHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHH----HHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh----hhhcccHHHH
Confidence 6799999999887 666666422 12577889999999999999999999999999999887 34444 4444
Q ss_pred ccccc-CCchHHHHHHHHHHHHHHHh------------hcC-------------------------CCCCCChHhHHHHH
Q 010666 81 LPCIS-DKEEKIRVVARETNEELRAI------------KAD-------------------------PADGFDVGPILSIA 122 (504)
Q Consensus 81 Lp~Ls-d~~~eIR~~A~~~N~~Ll~l------------i~~-------------------------~~~~~d~~~iv~vL 122 (504)
+..|. |++|.+...|..+....-.. +.+ +...-+-..+..-+
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~ 250 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERL 250 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhc
Confidence 44444 88888877776654433222 111 00001122222233
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hchhhHHHHHHHHH
Q 010666 123 TRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDLQHFRQLVVFLV 200 (504)
Q Consensus 123 ~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is--~~~~~F~~fm~~LL 200 (504)
..++.+.+...=+.|.+=+.-+....|..- +....-|.+ -+|++..++.....+....++- ..++-|...+....
T Consensus 251 ~~~~~~~n~~vl~~av~~i~~l~~~~~~~~--~~~~~~~~l-~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~ 327 (757)
T COG5096 251 SPPLQHNNAEVLLIAVKVILRLLVFLPSNN--LFLISSPPL-VTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFL 327 (757)
T ss_pred cchhhhCcHHHHHHHHHHHHHHhhhhcccc--HHHhhccHH-HHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhh
Confidence 344444445555555555555555544322 222223333 3444555677777776666654 24455555555444
Q ss_pred hhccccc-hhhhhhHHHHHHHHhhcCChHHHHHHHHHhhcc--c--cChHHHHHHHHHHHHH
Q 010666 201 HNFRVDN-SLLEKRGALIIRRLCVLLDAERVYRELSTILEG--E--ADLDFACTMVQALNLI 257 (504)
Q Consensus 201 ~lF~~dr-~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~--~--~Dl~F~~~mVq~Ln~i 257 (504)
..+..|- ..|+. .+++-...+.+.++..+.+.... + -|.+|++..|+.|--.
T Consensus 328 ~~~~~~i~~~lek-----~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~ 384 (757)
T COG5096 328 IEYNDDIYIKLEK-----LDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDL 384 (757)
T ss_pred hhccchHHHHHHH-----HHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 4444331 22222 23333344445555544443322 2 5666666666665443
No 45
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.65 Score=53.36 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=131.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
-+++-||.-|..|+-+|.+..+.-. .-|++--...+.+++.-+=.+.+.-+.+++.++++ .+.|+-++++.+...
T Consensus 153 ~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~i 227 (866)
T KOG1062|consen 153 HRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKI 227 (866)
T ss_pred CCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence 4678899999999999988765432 22333444455666677777888888888888775 344444454444433
Q ss_pred cc-----------------CCchHHH-------------HHHHHHHHHHHHhhcCCCCCCC-------------------
Q 010666 84 IS-----------------DKEEKIR-------------VVARETNEELRAIKADPADGFD------------------- 114 (504)
Q Consensus 84 Ls-----------------d~~~eIR-------------~~A~~~N~~Ll~li~~~~~~~d------------------- 114 (504)
|- ||.-.|| ++....|.-|.+...+.....+
T Consensus 228 Lk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~ 307 (866)
T KOG1062|consen 228 LKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN 307 (866)
T ss_pred HHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC
Confidence 32 2222222 1122233333333332211111
Q ss_pred ---hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh
Q 010666 115 ---VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 191 (504)
Q Consensus 115 ---~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~ 191 (504)
...-+|+|-+.+.+.+--+|.-||+=|.-.....|.-+..|- .+++.||.|+++-+..++|||.-.+. |+.+
T Consensus 308 ~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lv-n~~N 382 (866)
T KOG1062|consen 308 SGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALV-NESN 382 (866)
T ss_pred chHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHh-cccc
Confidence 124468889999988888999999999999999998887664 46789999999999999999999886 6778
Q ss_pred HHHHHHHHHhhccccc
Q 010666 192 FRQLVVFLVHNFRVDN 207 (504)
Q Consensus 192 F~~fm~~LL~lF~~dr 207 (504)
-+-.++.|++++..-.
T Consensus 383 v~~mv~eLl~fL~~~d 398 (866)
T KOG1062|consen 383 VRVMVKELLEFLESSD 398 (866)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888888888776443
No 46
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.94 E-value=0.15 Score=48.03 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=114.8
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC-ccccccHHHHHHHHcccccCCc-hHHHHHHHHHHHHHHHhh
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-DQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIK 106 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~-~~llpylp~iL~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li 106 (504)
..+..+.+.-+...++++++..|...+.-+...++-++ +.+..+....+.++++.|..++ +.+++.|..+...++..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 45688888889999999999999999999999999985 4455999999999999999976 568999999999999998
Q ss_pred cCCCC------CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhc
Q 010666 107 ADPAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 167 (504)
Q Consensus 107 ~~~~~------~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksL 167 (504)
.+.++ .-.++.++..+...+.+ ......||+=+..+...+|.-+-+|..++-..++..+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 87543 12356777777766654 5678899999999999999999999999888777654
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=4.4 Score=46.46 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=116.5
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC-----
Q 010666 34 RMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD----- 108 (504)
Q Consensus 34 ~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~----- 108 (504)
++.+=+..-+.++-|++|.-||.-+..+.--+|+.+-|-+|++.. -|.|++|.|..+|..|--+|.+--++
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 355666666778889999988888877777777777777777665 57889999998888887666542211
Q ss_pred ----------C---------------------------------------------------------CCCCChHhH---
Q 010666 109 ----------P---------------------------------------------------------ADGFDVGPI--- 118 (504)
Q Consensus 109 ----------~---------------------------------------------------------~~~~d~~~i--- 118 (504)
. .+.-|-.+.
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL 299 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL 299 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence 0 001122222
Q ss_pred -HHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHH
Q 010666 119 -LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV 197 (504)
Q Consensus 119 -v~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~ 197 (504)
|.-|...+.+++.--|.-+|-=+.-+...+|.-+..|-+ .+|+||+|.++.|..++|+|+-.|. ++++....+.
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmV-skkNl~eIVk 374 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMV-SKKNLMEIVK 374 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHh-hhhhHHHHHH
Confidence 223333444555556777777777778888888877655 5689999999999999999999998 4778888888
Q ss_pred HHHhhcccc
Q 010666 198 FLVHNFRVD 206 (504)
Q Consensus 198 ~LL~lF~~d 206 (504)
.|+.++...
T Consensus 375 ~LM~~~~~a 383 (877)
T KOG1059|consen 375 TLMKHVEKA 383 (877)
T ss_pred HHHHHHHhc
Confidence 888888544
No 48
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=0.36 Score=57.37 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhccCC-----CCchHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 13 ADSALWEFLQEIKNSP-----SVDYGRMAEILVQRAA----SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 13 ae~lL~~FLkeIk~~~-----~vD~~~iI~ILv~~l~----s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
+|.-+.+++..|.... .-=++++.|++++-|. .++|++|..|--=+..|.-|+..-.-.++|- ++..
T Consensus 893 seDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~l----lfti 968 (1251)
T KOG0414|consen 893 SEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPL----LFTI 968 (1251)
T ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHH
Confidence 3555667777776542 2237889999999884 4578999998888888888876633333444 4444
Q ss_pred cc-CCchHHHHHHHHHHHHHHHhhcCCCCCCChH----hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhH
Q 010666 84 IS-DKEEKIRVVARETNEELRAIKADPADGFDVG----PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 158 (504)
Q Consensus 84 Ls-d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~----~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~ 158 (504)
+. .+.|-||-=+....++|. +-|. +.-+.|-.++.+++..+|.+|+-=|.+|.-+.=-++- |
T Consensus 969 meksp~p~IRsN~VvalgDla---------v~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK----G 1035 (1251)
T KOG0414|consen 969 MEKSPSPRIRSNLVVALGDLA---------VRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK----G 1035 (1251)
T ss_pred HhcCCCceeeecchheccchh---------hhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc----c
Confidence 44 456666633333232221 3333 3445566677799999999999999999877744444 4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---------------------hchhhHHHHHHHHHhhccccchhhhhh
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIA---------------------KDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is---------------------~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
-++.+-.||.|+.++|...|=....+++ -+++-|+.+|.+|+.+.++|.+.=.+|
T Consensus 1036 ql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkderf~~~~ 1111 (1251)
T KOG0414|consen 1036 QLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDERFSADR 1111 (1251)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhcccccccccc
Confidence 5566677889999999988874444443 145779999999999999996433333
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.60 E-value=1 Score=51.61 Aligned_cols=201 Identities=15% Similarity=0.223 Sum_probs=139.1
Q ss_pred CchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 30 VDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
+-.+.+.+.|-.-|+|. .-..|.|.++-++.+-.+.|-.++||+-.++++|=.+|.|....||..+..+...|.+...-
T Consensus 507 lgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 507 LGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred hCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 44678889999999988 46889999999999999999999999999999999999999999999999999888888754
Q ss_pred CCCCCChHhHHHHHHHhcCCC--CH-HHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 109 PADGFDVGPILSIATRQLSSE--WE-ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 109 ~~~~~d~~~iv~vL~~~L~s~--~e-~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
.+.+ .|+.|+..|-.-.... .+ ..=+.|...|+.+.+-.-.. -|.-...-.+.+-...+++|+-.-+|.|+.++
T Consensus 587 ygie-~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~--yyTrevmlil~rEf~sPDeemkkivLKVv~qc 663 (1172)
T KOG0213|consen 587 YGIE-QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS--YYTREVMLILIREFGSPDEEMKKIVLKVVKQC 663 (1172)
T ss_pred cchH-HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH--HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 3322 2677777776665322 22 23445556666554432111 12334455677888889999999999999999
Q ss_pred hh----chhhHH-HHHHHHHhhccccchhhhhhHHH-----HHHHHhhcCCh-HHHHHHH
Q 010666 186 AK----DLQHFR-QLVVFLVHNFRVDNSLLEKRGAL-----IIRRLCVLLDA-ERVYREL 234 (504)
Q Consensus 186 s~----~~~~F~-~fm~~LL~lF~~dr~LLe~Rg~l-----IIRqLC~~L~a-E~Iy~~L 234 (504)
|. ++.|.+ ..+-...+.|...|.-++.| ++ ----+|..+|+ +.|-|.+
T Consensus 664 c~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr-~ykqlv~ttv~ia~KvG~~~~v~R~v 722 (1172)
T KOG0213|consen 664 CATDGVEPAYIRFDILPEFFFSFWGRRMALDRR-NYKQLVDTTVEIAAKVGSDPIVSRVV 722 (1172)
T ss_pred hcccCCCHHHHhhhhhHHHHhhhhhhhhhcccc-chhhHHHHHHHHHHHhCchHHHHHHh
Confidence 94 233322 33344455555555555444 22 22346777776 3343433
No 50
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.58 E-value=0.096 Score=42.70 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHcccc-cCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 77 LGAILPCI-SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 77 L~~lLp~L-sd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
+..++..| .|+++.+|..|..+.+ .+.-..+++.|...+.+++..+|.+|..+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~-----------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG-----------ELGDPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH-----------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH-----------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 34567777 8999999999988886 2344688999999999999999999999998762
Q ss_pred hhHHHHHHHHhcCCCCHHH-HHHHHHHH
Q 010666 156 LNDIFDTLLKALSDPSDEV-VLLVLEVH 182 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeV-v~~~L~LL 182 (504)
.+..++.|.+.+.|+++.+ ...+.+-|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3457788888888766555 55565554
No 51
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.45 E-value=0.45 Score=45.48 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=97.7
Q ss_pred ccccHHHHHHHHccccc------------------CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC
Q 010666 69 LVPYYADILGAILPCIS------------------DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 130 (504)
Q Consensus 69 llpylp~iL~~lLp~Ls------------------d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~ 130 (504)
+.|+++.++..++.-.. |..-++|++|=++-..++... ...+|+..+++.+..-|.+ +
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~---~~~~~~~~~~~~v~~GL~D-~ 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTC---LSRIDISEFLDRVEAGLKD-E 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHST---CSSS-HHHHHHHHHHTTSS--
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHH---HHhCCHHHHHHHHHhhcCC-c
Confidence 45777888887776554 345799999999999998854 4578899999999999977 8
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcC----CCC--------HHHHHHHHHHHHHHh------hchh-h
Q 010666 131 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----DPS--------DEVVLLVLEVHACIA------KDLQ-H 191 (504)
Q Consensus 131 e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLS----D~s--------deVv~~~L~LLa~Is------~~~~-~ 191 (504)
..+|+-|..=+.-|...+|..+....+.+.+.+=++|+ +.+ +|.+..++.+...+. +... .
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~ 158 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNK 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-H
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHH
Confidence 88999999999999999999999999999888887774 332 577788888888773 1223 6
Q ss_pred HHHHHHHH
Q 010666 192 FRQLVVFL 199 (504)
Q Consensus 192 F~~fm~~L 199 (504)
|..|+..+
T Consensus 159 ~~~f~~~i 166 (169)
T PF08623_consen 159 WNEFVEWI 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 52
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.32 E-value=0.049 Score=62.89 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=89.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHh-cCCccccccHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD---EFTRLTAITWINEFVK-LGGDQLVPYYADIL 77 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e---~~iRltaL~WI~efl~-i~~~~llpylp~iL 77 (504)
|+=|+.+||..+..++.-++.+-..=.+-+.+-++|.+..--.+.+ -..|.+|+.-+..+-. +|...+.||-|+++
T Consensus 918 Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl 997 (1030)
T KOG1967|consen 918 LSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVL 997 (1030)
T ss_pred cCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHH
Confidence 4567889999999999999998875546678889999988766666 4679999999999999 89999999999999
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHh
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l 105 (504)
.|+.|+|+|+..-||++|..+=+.-..+
T Consensus 998 ~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 998 RALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 9999999999999999999986654433
No 53
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.28 Score=55.27 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=101.4
Q ss_pred cccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 010666 68 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 147 (504)
Q Consensus 68 ~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k 147 (504)
.++|. +-=+++..-|.|+.-|||++|...-..|..-- .+| -...+.-|...|.++-+.+|+.|+.-|.++-..
T Consensus 368 siI~s--GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss----P~F-A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPS--GACGALVHGLEDEFYEVRRAAVASLCSLATSS----PGF-AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccc--cccceeeeechHHHHHHHHHHHHHHHHHHcCC----CCc-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 44554 44577888889999999999987765543321 112 246678899999999999999999999998877
Q ss_pred chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHH---Hhhccccch
Q 010666 148 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFL---VHNFRVDNS 208 (504)
Q Consensus 148 ~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~L---L~lF~~dr~ 208 (504)
+..-+..++++|++|-|.+.+|.....++|...- ++.+-+...++.| |..|++|+.
T Consensus 441 -----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd 500 (823)
T KOG2259|consen 441 -----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRD 500 (823)
T ss_pred -----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcH
Confidence 4677889999999999999999999999988765 5667788888887 557778853
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.27 Score=56.27 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=115.4
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 010666 36 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 115 (504)
Q Consensus 36 I~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~ 115 (504)
|+||-.++.+.|.-+|..++.-+.-.+...+...-.|=+.| +-||-|++.-||+-|-+.. ..++. .-++
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs---~~lvn----~~Nv 383 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELS---YALVN----ESNV 383 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHH---HHHhc----cccH
Confidence 44444455567777999999999999999998887776655 5699999999998776654 44442 3567
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-h-chhhHH
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-K-DLQHFR 193 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~-~~~~F~ 193 (504)
..|++-|..+|.+..++-|..+-.-|.++.+++...=.=|+|.++-++-..=+.-.++|+..-+++++.-. + .+.-+.
T Consensus 384 ~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~ 463 (866)
T KOG1062|consen 384 RVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVL 463 (866)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHH
Confidence 89999999999988999999999999999999865544455555554433222346899999999998874 3 334466
Q ss_pred HHHHHHHhhc
Q 010666 194 QLVVFLVHNF 203 (504)
Q Consensus 194 ~fm~~LL~lF 203 (504)
+++..+..-+
T Consensus 464 rLy~a~~~~~ 473 (866)
T KOG1062|consen 464 RLYLALSEDT 473 (866)
T ss_pred HHHHHHhhhh
Confidence 7777775543
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.08 E-value=0.21 Score=51.52 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=112.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCC-------CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccc----cH
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSP-------SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP----YY 73 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~-------~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llp----yl 73 (504)
++.++.+-.=.++++++.+-+... ..+-+.....++..+.++|.+++..+..=+..++.-++...-. .+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 356667777778999998887331 1111225666667999999999999999999999998876665 44
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc-------CCCCHHHHHHHH--HHHHHH
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-------SSEWEATRIEAL--HWISTL 144 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L-------~s~~e~TRlaaL--~WL~~L 144 (504)
+.+++.+-..++.++.++...|..+.+.|++.=.--..-.+ ...++.+..-+ .+.+.+....++ -|+..+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 55555555555556677778888888777642110000011 44445555444 133444455554 899999
Q ss_pred HhhchhhhhhchhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhc
Q 010666 145 LNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKD 188 (504)
Q Consensus 145 ~~k~P~~~l~~~~~lfp~LLksLSD~-sdeVv~~~L~LLa~Is~~ 188 (504)
....-++|..+. ++|.|...+.+. -+.|++.++..+.++.+.
T Consensus 228 ~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 228 EPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp SHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 999888887666 888888887765 578999999999998853
No 56
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.99 Score=49.50 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=86.3
Q ss_pred ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhh-----
Q 010666 114 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAK----- 187 (504)
Q Consensus 114 d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~s-deVv~~~L~LLa~Is~----- 187 (504)
.++.++..+.....+.+.-.|--|.+=|...+.-+|.++..|-..++.++...|-|.. .+|+..++..|.++.+
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 3788888999999999888899999999999999999999999999999999999885 6999999999999872
Q ss_pred -chhhHHHHHHHHHhhccccchhhhhhHH
Q 010666 188 -DLQHFRQLVVFLVHNFRVDNSLLEKRGA 215 (504)
Q Consensus 188 -~~~~F~~fm~~LL~lF~~dr~LLe~Rg~ 215 (504)
=..||......+-.+|..+.. +-|.+
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~--~~R~a 361 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDD--KMRAA 361 (533)
T ss_pred chhhhchhHHHHHHHHHHhcCh--hhhhh
Confidence 247899999999999987765 44533
No 57
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.83 E-value=0.14 Score=41.73 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=62.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
.|+++.||..|-.+|+ .+.-++.++.|+..+.++++.+|..++.++..+ + -++.+..+..
T Consensus 10 ~~~~~~vr~~a~~~L~----------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---~-------~~~~~~~L~~ 69 (88)
T PF13646_consen 10 NDPDPQVRAEAARALG----------ELGDPEAIPALIELLKDEDPMVRRAAARALGRI---G-------DPEAIPALIK 69 (88)
T ss_dssp TSSSHHHHHHHHHHHH----------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---H-------HHHTHHHHHH
T ss_pred cCCCHHHHHHHHHHHH----------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-------CHHHHHHHHH
Confidence 7999999999988888 334568899999999999999999999999876 1 3788888888
Q ss_pred cccCC-chHHHHHHHHHH
Q 010666 83 CISDK-EEKIRVVARETN 99 (504)
Q Consensus 83 ~Lsd~-~~eIR~~A~~~N 99 (504)
.+.++ +..||..|..+.
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 88775 456788887654
No 58
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.56 E-value=2.2 Score=49.86 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=135.2
Q ss_pred HHHHHHHHhccC---CCCchHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHH
Q 010666 16 ALWEFLQEIKNS---PSVDYGRMAEILVQRAAS-PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 91 (504)
Q Consensus 16 lL~~FLkeIk~~---~~vD~~~iI~ILv~~l~s-~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eI 91 (504)
.|..+++-+.+. ...++..++-+++..... .|-..=..+..-|..+..--+..+.+|.-.++..+|.++.+...++
T Consensus 273 ale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l 352 (815)
T KOG1820|consen 273 ALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSEL 352 (815)
T ss_pred HHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHH
Confidence 455555555433 245566666666665542 3344455677788888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh--hchhHHHHHHHHhcCC
Q 010666 92 RVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSD 169 (504)
Q Consensus 92 R~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l--~~~~~lfp~LLksLSD 169 (504)
|+++..+...... ...+.++...+...+.+.+...|-.+..|+.-...+.+.+.. .-.+.+.|.+.+.-+|
T Consensus 353 ~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D 425 (815)
T KOG1820|consen 353 RDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIND 425 (815)
T ss_pred HHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccC
Confidence 9999988777655 455788999999999999999999999999999999984332 2356789999999999
Q ss_pred CCHHHHHHHHHHHHHHh--hchhhHHHHHHHH
Q 010666 170 PSDEVVLLVLEVHACIA--KDLQHFRQLVVFL 199 (504)
Q Consensus 170 ~sdeVv~~~L~LLa~Is--~~~~~F~~fm~~L 199 (504)
.+.+|..-+++.++.+- .+++-|++.+..+
T Consensus 426 ~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 426 TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 99999999999988875 3455554444433
No 59
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.55 E-value=5.8 Score=48.82 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 127 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~ 127 (504)
++.=.-...||.-++.-.. .+..-+-.+|.-|+--++.+...+|.-|-+|...+-.. .+...--..|-..+-..+.
T Consensus 790 ~~~d~~~a~li~~~la~~r-~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~---Dp~vL~~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 790 RFADDDDAKLIVFYLAHAR-SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA---DPSVLSRPDVQEAVHGRLN 865 (1692)
T ss_pred ccccchhHHHHHHHHHhhh-HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc---ChHhhcCHHHHHHHHHhhc
Confidence 3444445667665555433 35555677888888888888899999999997654432 2333444666677888999
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Q 010666 128 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~ 204 (504)
+++..+|-||++-+--+.--+|+-+..|.+.+ -....|++-.|+.+++..+.+||+....|..+..-..++..
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY~~i----~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlr 938 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYYDQI----IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLR 938 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Confidence 99999999999999988888888887776665 45567999999999999999999888899888887777665
No 60
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.36 E-value=4.3 Score=47.52 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHhcCCccccc-cHHHHHHHHcc
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVP-YYADILGAILP 82 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e----~~iRltaL~WI~efl~i~~~~llp-ylp~iL~~lLp 82 (504)
-|-..++.++.+++. +.....=--...||-|+.-++.++ ....-+++.-|..++.-.|..+-. +.--.+.++.+
T Consensus 588 ~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak 666 (1005)
T KOG2274|consen 588 QVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAK 666 (1005)
T ss_pred hHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHh
Confidence 555666666666665 433322223445566666666555 677889999999999998887543 34556677778
Q ss_pred cccCCc-hHHHHHHHHHHHHHHHh----hcC--CCCCCChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 83 CISDKE-EKIRVVARETNEELRAI----KAD--PADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 83 ~Lsd~~-~eIR~~A~~~N~~Ll~l----i~~--~~~~~d~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
|.-|++ .+.-+.|.+|...|... +-. ...+.++.-++.++.+-|. ..++.|-.-+=.-+..|..++|.++-+
T Consensus 667 ~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~ 746 (1005)
T KOG2274|consen 667 ITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGP 746 (1005)
T ss_pred heeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhch
Confidence 887754 56778888888877765 221 2345778899999996665 335556666668999999999999999
Q ss_pred chhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcccc
Q 010666 155 FLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 155 ~~~~lfp~LLksLSD~s-deVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~d 206 (504)
-.+.++.++++.|--.. ..|+..-+-+++.+. -...+.+|.+|-.++..+
T Consensus 747 n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~--~t~~~~~l~FL~Slp~~~ 797 (1005)
T KOG2274|consen 747 NLDQILRAVISRLQQAETLSVIQSLIMVFAHLV--HTDLDQLLNFLSSLPGPT 797 (1005)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--hCCHHHHHHHHHhCCCCC
Confidence 99999999998887643 577777778888875 345566777776666544
No 61
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.31 E-value=17 Score=46.80 Aligned_cols=225 Identities=18% Similarity=0.168 Sum_probs=134.8
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 110 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~ 110 (504)
...||.|+.-+.++++.+|.-|+.=|..+-. .+.+.-..+ .+.+..++..|.++++++++.|..+...|... +
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~----~ 561 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCC-HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT----A 561 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc----c
Confidence 4468888888989999999887654443332 222222222 35677778888899999999888887776543 1
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh-hh---hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 111 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VL---HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~-~l---~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+ ..+++.++..|.+++...+..+++=+-.+......+ +. .-..+-+|.|.+-|.++++++...+...++.++
T Consensus 562 d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 562 D----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred c----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 235566677788888888887877555554433321 11 112467889999999999999999999999999
Q ss_pred hchhhHH------HHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHH--------HHHHHHHhhccccChHHHHHHHH
Q 010666 187 KDLQHFR------QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQ 252 (504)
Q Consensus 187 ~~~~~F~------~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~--------Iy~~La~iL~~~~Dl~F~~~mVq 252 (504)
.+..... .-+.-|+.+++....--.+-...-+-+|...-+.+. +-+-|.+.|. ..|.+-+.....
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~-~~d~~v~e~Al~ 716 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK-SSSIEVAEQAVC 716 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHHHH
Confidence 5443322 223334444443322111111222222222222221 1233444443 367777777777
Q ss_pred HHHHHhcCchhHHHH
Q 010666 253 ALNLILLTSSELSEL 267 (504)
Q Consensus 253 ~Ln~iLLTs~El~~l 267 (504)
.|-+++-..+--.++
T Consensus 717 ALanLl~~~e~~~ei 731 (2102)
T PLN03200 717 ALANLLSDPEVAAEA 731 (2102)
T ss_pred HHHHHHcCchHHHHH
Confidence 887777665544333
No 62
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=16 Score=44.04 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhcCCccccccHHHHHHHHcccccCC-chHHHHHHHHHHHHHHHhhcCCCCC---CChHhHHHHHHHhcC
Q 010666 52 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLS 127 (504)
Q Consensus 52 ltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~-~~eIR~~A~~~N~~Ll~li~~~~~~---~d~~~iv~vL~~~L~ 127 (504)
...++-+..++.+++-.=-.+.+.+. -+.|..... ...|++-|-++..+++... .++. -....+.|+|..-+.
T Consensus 631 ~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~--s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 631 FKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSP--SGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHHHHHHh
Confidence 34455566666665544444555555 344444333 6788888888888888872 1222 225677889999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--------hchh---hHHHHH
Q 010666 128 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--------KDLQ---HFRQLV 196 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is--------~~~~---~F~~fm 196 (504)
+....+|...|+=+.+|++..|.+...++...+|.++=++.|.++.-...+.++|-.|+ .++. -...|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 99999999999999999999999999999999998887889999999999999988887 2333 456677
Q ss_pred HHHHhhccccchhhhhhH----HHHHHHHhhcCCh---HHHHHHHHHhhccc------cChHHHHHHHHHHHHHhcCchh
Q 010666 197 VFLVHNFRVDNSLLEKRG----ALIIRRLCVLLDA---ERVYRELSTILEGE------ADLDFACTMVQALNLILLTSSE 263 (504)
Q Consensus 197 ~~LL~lF~~dr~LLe~Rg----~lIIRqLC~~L~a---E~Iy~~La~iL~~~------~Dl~F~~~mVq~Ln~iLLTs~E 263 (504)
..+-.-+-.|....-.+- +-|..+-...++. +.+|..+..+|.+. .-+.|+.+.|+.+--.++-..+
T Consensus 788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 777666667766555542 1133344444554 46777777777653 3577877777766555554443
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.11 E-value=0.038 Score=41.96 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHH
Q 010666 49 FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 101 (504)
Q Consensus 49 ~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~ 101 (504)
.+|..++.=|-++....+..+-+|+|+++..+.++|.|++++||..|..+.+.
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45666666666666777888999999999999999999999999999887654
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.99 E-value=1.1 Score=45.81 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCcccccc--HHHHHHHHc-ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHH
Q 010666 56 TWINEFVKLGGDQLVPY--YADILGAIL-PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA 132 (504)
Q Consensus 56 ~WI~efl~i~~~~llpy--lp~iL~~lL-p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~ 132 (504)
.-...+++.....+-+. +.++++.+. |.+.+++++||+.|-+|.+.+--+=.+ --..-+..+...+..+++.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-----~a~~~l~l~~~~~~~~~~~ 79 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE-----LAKEHLPLFLQALQKDDEE 79 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHhCCHH
Confidence 33445555555555553 448886655 999999999999999998754332111 1234455566666667899
Q ss_pred HHHHHHHHHHHHHhhchhhhhhchh---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh--HHHHHHHH-H
Q 010666 133 TRIEALHWISTLLNRHRTEVLHFLN---------DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH--FRQLVVFL-V 200 (504)
Q Consensus 133 TRlaaL~WL~~L~~k~P~~~l~~~~---------~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~--F~~fm~~L-L 200 (504)
.|++|++=+..+...|+..+++-.. .+...+.+.|.+.+++|...+.+-++++--.+.. -.+++..| +
T Consensus 80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll 159 (298)
T PF12719_consen 80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL 159 (298)
T ss_pred HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 9999999999999999988776544 4777888888888999999999999997622211 13555555 4
Q ss_pred hhcccc
Q 010666 201 HNFRVD 206 (504)
Q Consensus 201 ~lF~~d 206 (504)
.+|...
T Consensus 160 ~yF~p~ 165 (298)
T PF12719_consen 160 LYFNPS 165 (298)
T ss_pred HHcCcc
Confidence 456533
No 65
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=1.8 Score=50.31 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=124.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc-----------
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV----------- 70 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll----------- 70 (504)
+-||-.-||.++-.-|...++.=++.+-+.-.+++.|..+.+...|+++=+.|++=+..+.++.|+.++
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k 815 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEK 815 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 347777788888777777777555555666777888888888888888888888777777777654444
Q ss_pred ---------------------------ccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHH-HH
Q 010666 71 ---------------------------PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS-IA 122 (504)
Q Consensus 71 ---------------------------pylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~-vL 122 (504)
.|...++.--+..+-|++.+-|-.+....+.|++.......+ .+.+++. ++
T Consensus 816 ~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il 894 (982)
T KOG4653|consen 816 KKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLIL 894 (982)
T ss_pred cCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHH
Confidence 445555566666666777777888888888888887643333 5666664 45
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch----hHHHHHHHHhcCCCCHHHH
Q 010666 123 TRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL----NDIFDTLLKALSDPSDEVV 175 (504)
Q Consensus 123 ~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~----~~lfp~LLksLSD~sdeVv 175 (504)
...-.++.+..|-||..-+.++++-...+++++. -+..-.++....+..|+++
T Consensus 895 ~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~ 951 (982)
T KOG4653|consen 895 SLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGL 951 (982)
T ss_pred HHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 5555688999999999999999999999998854 2344455555556666644
No 66
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.03 E-value=1.6 Score=42.19 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=81.6
Q ss_pred CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--
Q 010666 110 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-- 186 (504)
Q Consensus 110 ~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k-~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-- 186 (504)
.+.+||+..+.+..+-+....+.-|.-|-+=+..+++. .++++++....+.+.+-+.|.-.+++|+..+|++|.++.
T Consensus 31 ~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 31 PEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 46799999999999999988888999999999999999 999999999999999999999999999999999999983
Q ss_pred -h-chhhHHHHHHHH---Hhhccccch
Q 010666 187 -K-DLQHFRQLVVFL---VHNFRVDNS 208 (504)
Q Consensus 187 -~-~~~~F~~fm~~L---L~lF~~dr~ 208 (504)
. -.+.+..++..| +.+|++.+.
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln~f~~k~~ 137 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLNLFKNKNV 137 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 1 123444444444 455555553
No 67
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=5.7 Score=45.81 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHcCC---CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc---------cccCCc----hHHHHHH
Q 010666 32 YGRMAEILVQRAAS---PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP---------CISDKE----EKIRVVA 95 (504)
Q Consensus 32 ~~~iI~ILv~~l~s---~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp---------~Lsd~~----~eIR~~A 95 (504)
|+.||.-|+.-... .+.-.|-.+-.=+.|++..++.+..|-.-++...++. .++..+ .+++..-
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L 575 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL 575 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 67777777765444 3456799999999999999998877776666666665 333332 3445455
Q ss_pred HHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCH-H
Q 010666 96 RETNEELRAIKADPADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-E 173 (504)
Q Consensus 96 ~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s-~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sd-e 173 (504)
+.+.+...+.+.. .-.-+-+.+++.+.+.|.+ .+-.+--.|+-=+..+.+.....+..|++.+-|=|+..|+.-.+ .
T Consensus 576 c~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~q 654 (859)
T KOG1241|consen 576 CNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQ 654 (859)
T ss_pred HHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHH
Confidence 5555555444433 1122245667777777766 34445667777788888888999999999999999999976654 7
Q ss_pred HHHHHHHHHHHHhh--ch---hhHHHHHHHHHhhcccc
Q 010666 174 VVLLVLEVHACIAK--DL---QHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 174 Vv~~~L~LLa~Is~--~~---~~F~~fm~~LL~lF~~d 206 (504)
|..-+..+...+|. ++ .|=+.+|..|++.+++.
T Consensus 655 Vc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 655 VCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSP 692 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCc
Confidence 88888899999982 22 45577888888888766
No 68
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.94 E-value=2 Score=43.56 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=109.0
Q ss_pred HHHHHHcC-CCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 010666 37 EILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 115 (504)
Q Consensus 37 ~ILv~~l~-s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~ 115 (504)
.-|+.-+. +.||++|..++.=+...-..+...=+--=.+.+..|...|.++++.+|+.|..+...+-.-... ..-.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en---~~~I 91 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN---QEQI 91 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh---HHHH
Confidence 44444454 4578888877665555433332211112247788899999999999998887765543211111 0001
Q ss_pred HhHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHH
Q 010666 116 GPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR 193 (504)
Q Consensus 116 ~~iv~vL~~~L~s--~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~ 193 (504)
..-++.+++...+ -+...++++|+=|..+--.. ..-..+.+.+|.++..|+..+..+...+|.+|..+|+|...-+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~ 169 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTR 169 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHH
Confidence 2223333333222 25567789998888873221 1112233567777888888899999999999999998776654
Q ss_pred H-----HHHHHHhhccccc-hhhhhhHHHHHHHHhhcCCh
Q 010666 194 Q-----LVVFLVHNFRVDN-SLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 194 ~-----fm~~LL~lF~~dr-~LLe~Rg~lIIRqLC~~L~a 227 (504)
. ....++.+|..+. +-.--|.=.|+-++...+..
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 3 3457788887662 22122333344444444433
No 69
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=92.91 E-value=1.4 Score=39.28 Aligned_cols=99 Identities=24% Similarity=0.240 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHH-HhhcCC------hH
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR-LCVLLD------AE 228 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRq-LC~~L~------aE 228 (504)
.+-.++.|++.|.|++.+|+..|+++|.+.|.++.+.+.++.. +..-..|..+|..+.=+ |...-| ..
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~-----~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~ 80 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL-----RPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIG 80 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc-----CcHHHHHHHcCHHHHHHHHcchHHHHHhcchh
Confidence 3345677889999999999999999999999777676666542 22223445566654333 322211 23
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHHhcC
Q 010666 229 RVYRELSTILEGEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 229 ~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
-|-+++-.|.+ ..+.++|..+=..+..-+-+
T Consensus 81 ~v~~El~~W~~-~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 81 YVEKELDKWFE-SFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred HHHHHHHHHHH-cccHHHHHHHHHHHHHHHhc
Confidence 46677777773 47888887776666554443
No 70
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.71 E-value=4.8 Score=41.46 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHH--------HHHHHHcccccCCchHHHHHHHHHHHHH
Q 010666 31 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--------DILGAILPCISDKEEKIRVVARETNEEL 102 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp--------~iL~~lLp~Lsd~~~eIR~~A~~~N~~L 102 (504)
.|.+++=-|+..+ +.++.+...++.-|.+++.-.+. ....+- .....+++.+..++.-|...|..+...+
T Consensus 55 ~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH----HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555555666666 77899999999999999999883 222211 2677888888888999999999998888
Q ss_pred HHhhcCCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhc
Q 010666 103 RAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 167 (504)
Q Consensus 103 l~li~~~~~~---~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksL 167 (504)
+..-...... -.+...++.+..++.+++...+..|+.=+..|....+-...-+..+.++.+.+.|
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHH
Confidence 7665443222 2344555666666655555556777777777776655554444467777776666
No 71
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=4.7 Score=42.60 Aligned_cols=198 Identities=19% Similarity=0.220 Sum_probs=120.7
Q ss_pred HHHHHhccC--CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC--ccccccHHHHHHHHcccccCCchHHHHH
Q 010666 19 EFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--DQLVPYYADILGAILPCISDKEEKIRVV 94 (504)
Q Consensus 19 ~FLkeIk~~--~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~--~~llpylp~iL~~lLp~Lsd~~~eIR~~ 94 (504)
++.|+.+.. ...+.-.|+++-.-.-.+.+.+-+.-|+.=|.++++=-+ .+++++ +.+.-++..+.+++.++|+.
T Consensus 66 e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~--ggl~~ll~~l~~~~~~lR~~ 143 (342)
T KOG2160|consen 66 EDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISL--GGLVPLLGYLENSDAELREL 143 (342)
T ss_pred hhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc--cCHHHHHHHhcCCcHHHHHH
Confidence 344555432 123455554444445566678888899988888887543 244444 33333444899999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchhhhhhc--hhHHHHHHHHhcCCC
Q 010666 95 ARETNEELRAIKADPAD-GFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSDP 170 (504)
Q Consensus 95 A~~~N~~Ll~li~~~~~-~~d~~~iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~~~l~~--~~~lfp~LLksLSD~ 170 (504)
|..|.+...+--+...+ .+..+ -+..|...| .++...+|..||-=+.-|.+..|...-.| .++ +..|.+.|..+
T Consensus 144 Aa~Vigt~~qNNP~~Qe~v~E~~-~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~ 221 (342)
T KOG2160|consen 144 AARVIGTAVQNNPKSQEQVIELG-ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSN 221 (342)
T ss_pred HHHHHHHHHhcCHHHHHHHHHcc-cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcC
Confidence 99998775543221100 01111 233444444 46667778999999999999998766544 234 66777788874
Q ss_pred --CHHHHHHHHHHHHHHhhch---------hhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCC
Q 010666 171 --SDEVVLLVLEVHACIAKDL---------QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 171 --sdeVv~~~L~LLa~Is~~~---------~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~ 226 (504)
+.....+++.+++.+-+.+ .-|...|.++..-+..+- +...++.+|..+.
T Consensus 222 ~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~------~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 222 NTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEV------NEAALTALLSLLS 282 (342)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhh------hHHHHHHHHHHHH
Confidence 5566678888888877322 225555555554444332 2455666665554
No 72
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.63 E-value=0.32 Score=47.05 Aligned_cols=77 Identities=13% Similarity=0.301 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 010666 28 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 104 (504)
Q Consensus 28 ~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i-~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~ 104 (504)
...||....++..+=+...++--|..|..=+.+++.. +++.++|.+|.++..+-..|...+++|...+.++.+.|..
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999 9999999999999999999999999999999888887733
No 73
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.61 E-value=1.2 Score=50.67 Aligned_cols=194 Identities=15% Similarity=0.099 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHcCC----CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 32 YGRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 32 ~~~iI~ILv~~l~s----~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
++++.|+..+-|.+ +|+++|.+|---+..|.-++..-...++|-++...=+ +++|.||.-|.--.++++--..
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek---~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEK---HPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---CCCcceeccceeeccccceehh
Confidence 57889999998887 7899999999999999999988666777776665432 6889999554433333221110
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 108 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
. =.+..-+-|-..|.+++-.+|-+||-=+..|.-..--|+- +-++.+-++|.|++.++-.++--.+.+|++
T Consensus 967 ~-----~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK----Gqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 967 T-----TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK----GQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred h-----hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec----cchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 0 0234455677888899999999999988888776655554 456677789999999999999888888884
Q ss_pred c-hhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010666 188 D-LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 238 (504)
Q Consensus 188 ~-~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL 238 (504)
. ..-+..|++-.-.+= .|..+=..--..|||-|-..+.-||=-+.+++-|
T Consensus 1038 KdNt~yn~fidifs~ls-~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L 1088 (1128)
T COG5098 1038 KDNTMYNGFIDIFSTLS-SDAENGQEPFKLIIGFLTDFISKERHQKQLKESL 1088 (1128)
T ss_pred cccchhhhhHHHHHHcC-chhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233333332221111 1110000001246666666666665555555544
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.47 E-value=4 Score=46.17 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccC
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 86 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd 86 (504)
=||+.+-.+.+-|.+ .+-.+++.+.|-.-|+|. .-+.|.|.+.-++.+-.+.|...++|+-.+++.|=.|+.|
T Consensus 296 YVRnvt~ra~~vva~------algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D 369 (975)
T COG5181 296 YVRNVTGRAVGVVAD------ALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKD 369 (975)
T ss_pred HHHHHHHHHHHHHHH------hhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhc
Confidence 355555544444444 344677888888889888 4688999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC--CH-HHHHHHHHHHHHHHhhchhhhhhchhH-HHHH
Q 010666 87 KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WE-ATRIEALHWISTLLNRHRTEVLHFLND-IFDT 162 (504)
Q Consensus 87 ~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~--~e-~TRlaaL~WL~~L~~k~P~~~l~~~~~-lfp~ 162 (504)
...-||-.+..+...+.+.+.-.+.+ -++.++..|-.-.... .+ ..=+.|...++-|.+ |+ -..|... ....
T Consensus 370 ~~~~vRi~tA~alS~lae~~~Pygie-~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~--pe-Ya~h~tre~m~i 445 (975)
T COG5181 370 RSRFVRIDTANALSYLAELVGPYGIE-QFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS--PE-YACHDTREHMEI 445 (975)
T ss_pred cceeeeehhHhHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCC--hH-hhhhhHHHHHHH
Confidence 99999999999999888887543322 1456666665544321 12 123344444443322 22 1233333 3334
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 163 LLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 163 LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
++.-+ ++.||-..+++-+.-++|
T Consensus 446 v~ref-~spdeemkk~~l~v~~~C 468 (975)
T COG5181 446 VFREF-KSPDEEMKKDLLVVERIC 468 (975)
T ss_pred HHHHh-CCchhhcchhHHHHHHHH
Confidence 44444 455555566777777777
No 75
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.38 E-value=2.7 Score=42.87 Aligned_cols=139 Identities=15% Similarity=0.237 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC
Q 010666 51 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 130 (504)
Q Consensus 51 RltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~ 130 (504)
.-.++.|+-. -.+....+-.++|-++.++|-.+.|.++++|..++++...|++-+....
T Consensus 96 ~~~~l~w~v~-~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-------------------- 154 (282)
T PF10521_consen 96 ASHVLSWIVL-SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-------------------- 154 (282)
T ss_pred cHHHHHHHHH-hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh--------------------
Confidence 4578899877 5777777889999999999999999999999999999888877664311
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHh---------hchhhHH
Q 010666 131 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS--------DPSDEVVLLVLEVHACIA---------KDLQHFR 193 (504)
Q Consensus 131 e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLS--------D~sdeVv~~~L~LLa~Is---------~~~~~F~ 193 (504)
|. .+... ...+-+.+++.++|. +++.++...+...+..+. .....+.
T Consensus 155 ---------~~--~L~~t-----Gl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~ 218 (282)
T PF10521_consen 155 ---------WD--ILRRT-----GLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLD 218 (282)
T ss_pred ---------hH--HHHHc-----ChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHH
Confidence 33 22333 334445667777777 777778777777777663 1223455
Q ss_pred HHHHH-HHhhccccch--hhhhhHHHHHHHHhhcCCh
Q 010666 194 QLVVF-LVHNFRVDNS--LLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 194 ~fm~~-LL~lF~~dr~--LLe~Rg~lIIRqLC~~L~a 227 (504)
+++.. ++..+..... --+- -.+..++|+..++.
T Consensus 219 ~~l~e~IL~~~~~~~~~~~~~l-~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 219 KILREGILSSMEHESSFSYPRL-RTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHHhhhceeccccCchhH-HHHHHHHHHHHHHH
Confidence 55544 6665544422 1122 25566666665543
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=5.1 Score=46.07 Aligned_cols=126 Identities=19% Similarity=0.264 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
.++.++.-|+..++.+|--|++=+ ..+.-. ...--+.+-+..|+-|.++.+|+.|.-+-.++...= .+.+.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm---~~l~v~---~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~ 157 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTM---GCLRVD---KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVE 157 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhce---eeEeeh---HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhcc
Confidence 456666667777777777776532 122222 223346678889999999999999988887776653 33445
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh-hhhhchhHHHHHHHHhcCC
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALSD 169 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~-~~l~~~~~lfp~LLksLSD 169 (504)
-...++.|...+.+++..+-..|+.=+..+++..|+ ..+.....+.--+|..|+.
T Consensus 158 ~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e 213 (734)
T KOG1061|consen 158 DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE 213 (734)
T ss_pred ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999995 4455555555555555553
No 77
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.10 E-value=4.5 Score=48.76 Aligned_cols=282 Identities=18% Similarity=0.167 Sum_probs=154.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCc----hHHHHHHHHHHcCC-CChHH-----------HHHHHHHHHHHHhcC
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVD----YGRMAEILVQRAAS-PDEFT-----------RLTAITWINEFVKLG 65 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD----~~~iI~ILv~~l~s-~e~~i-----------RltaL~WI~efl~i~ 65 (504)
+.||..+||-.|-..|-+.|.-++..+..| .+++.|-|-.-+.. .+.-+ =.+|...+..--.+.
T Consensus 471 ~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~ 550 (1431)
T KOG1240|consen 471 LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELR 550 (1431)
T ss_pred hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998665433 45555655555544 22212 234444443333321
Q ss_pred Ccccc--------------ccHHH----HHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC
Q 010666 66 GDQLV--------------PYYAD----ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 127 (504)
Q Consensus 66 ~~~ll--------------pylp~----iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~ 127 (504)
...|. .++.. +=+.+.-.|+|+.+-||++-.+-...|-....+ ...=+-++.+|...|.
T Consensus 551 ~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLN 627 (1431)
T KOG1240|consen 551 QAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLN 627 (1431)
T ss_pred hcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhc
Confidence 11111 11222 223345567788888887666654444444432 2222457788999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----chhhHHHHHHHHHhhc
Q 010666 128 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNF 203 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~----~~~~F~~fm~~LL~lF 203 (504)
+.+..-|-|=.+=|--+----+.. .--+.++|.|...|+|..+.|+.+||+-+..+++ ...+..++++..+-+.
T Consensus 628 DkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 628 DKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL 705 (1431)
T ss_pred CccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe
Confidence 887777766433221000000000 2245689999999999999999999999999885 3455556665554444
Q ss_pred cccchhhhhhHHH-HHHHHhhcCChHHHHHHHHHhhcc--ccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcch
Q 010666 204 RVDNSLLEKRGAL-IIRRLCVLLDAERVYRELSTILEG--EADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAG 280 (504)
Q Consensus 204 ~~dr~LLe~Rg~l-IIRqLC~~L~aE~Iy~~La~iL~~--~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~ 280 (504)
-.- .+-=+|+.+ ||--....+++-.+|..+.-++.- +.++.+.. ++| .|-.++..+=.
T Consensus 706 ~hP-N~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~------------s~~------~LlsclkpPVs 766 (1431)
T KOG1240|consen 706 CHP-NLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIE------------SKE------VLLSCLKPPVS 766 (1431)
T ss_pred eCc-hHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhc------------chH------HHHHHhcCCCc
Confidence 322 111223333 333334444555555555554422 12222211 111 12233445556
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHhhHH
Q 010666 281 KDLFVSLYASWCHSPMAIISLCLLAQTYH 309 (504)
Q Consensus 281 ~~lF~~L~~sWchn~vs~lsLcLl~q~Ye 309 (504)
++.|..+++ |.- -.+.|==|+....|.
T Consensus 767 Rsv~~~l~r-~~~-ens~f~k~l~~~~~~ 793 (1431)
T KOG1240|consen 767 RSVFNQLLR-WSD-ENSSFWKKLLERHYS 793 (1431)
T ss_pred HHHHHHHHH-Hhh-cchHHHHHHHHHhhh
Confidence 677777765 332 334455566666663
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=19 Score=41.94 Aligned_cols=134 Identities=20% Similarity=0.217 Sum_probs=78.9
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhh
Q 010666 113 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQH 191 (504)
Q Consensus 113 ~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~ 191 (504)
-|+.-.++.....|.+.+..+-+||-+ .++..+|.. ....+..+|+..|- +..+|-...|+-++.|| .+..-
T Consensus 283 ~D~~lLL~stkpLl~S~n~sVVmA~aq---l~y~lAP~~---~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~l 355 (968)
T KOG1060|consen 283 PDLKLLLQSTKPLLQSRNPSVVMAVAQ---LFYHLAPKN---QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTL 355 (968)
T ss_pred ccHHHHHHhccHHHhcCCcHHHHHHHh---HHHhhCCHH---HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhh
Confidence 344555666666667777777777754 345556653 23345556666554 45566666777777777 34444
Q ss_pred HHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHH
Q 010666 192 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALN 255 (504)
Q Consensus 192 F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln 255 (504)
|+..+++. -.+++|...-..=-=-|.-.|..--|-..|+|+|-..+.. .|-+||++.||.+.
T Consensus 356 F~P~lKsF-fv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s-~d~~faa~aV~AiG 417 (968)
T KOG1060|consen 356 FEPHLKSF-FVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKS-SDRSFAAAAVKAIG 417 (968)
T ss_pred hhhhhhce-EeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-CchhHHHHHHHHHH
Confidence 44333322 1235564321111011555555555667788888888766 45589999999984
No 79
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.08 E-value=29 Score=40.53 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=110.6
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
.-|++.+.+=++.+..+.|.+.+..+=-.+..+-+.-|+.++ ..+..+.+-+.|++++||-.|-++...+- .
T Consensus 50 G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~ls~l~----~ 121 (757)
T COG5096 50 GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRTLSLLR----V 121 (757)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHHHHhcC----h
Confidence 457888888888888888876655544444455555554433 34556778899999999999998876421 1
Q ss_pred CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhh
Q 010666 109 PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA-LSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 109 ~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLks-LSD~sdeVv~~~L~LLa~Is~ 187 (504)
.-=.+.+++.+.+++.+.+..+|-+|--=+.-+++..|+-..+- | +-.+++. ++|+++.|+..|+--+..|..
T Consensus 122 ---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g-~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 122 ---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--G-LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--c-HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 11146777889999999999999999988999998886654432 1 2223333 459999999999999999973
Q ss_pred c--hhhHHHHHHHHHh
Q 010666 188 D--LQHFRQLVVFLVH 201 (504)
Q Consensus 188 ~--~~~F~~fm~~LL~ 201 (504)
+ ..||..+...+.+
T Consensus 196 e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 196 ELAHGYSLEVILRIPQ 211 (757)
T ss_pred hhhhhHHHHHHHHhhh
Confidence 2 3555555444433
No 80
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.89 E-value=4.1 Score=42.52 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHH-hcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC
Q 010666 50 TRLTAITWINEFV-KLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 128 (504)
Q Consensus 50 iRltaL~WI~efl-~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s 128 (504)
+|-..+.-+..++ .+++ .+.|.++.++.++||-|.|+..|+.+.+.++-..+...+.+ ..=++.+-.++.
T Consensus 113 Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~---~~F~~~lwl~ii----- 183 (307)
T PF04118_consen 113 VKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD---KYFWQCLWLCII----- 183 (307)
T ss_pred hHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh---hHHHHHHHHHHh-----
Confidence 4555666666555 4555 89999999999999999999989888888888888777644 222344444433
Q ss_pred CCHHHHHHHHHHHHHHHhhch-----------hhhhhchh-HHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010666 129 EWEATRIEALHWISTLLNRHR-----------TEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHAC 184 (504)
Q Consensus 129 ~~e~TRlaaL~WL~~L~~k~P-----------~~~l~~~~-~lfp~LLksLSD~sdeVv~~~L~LLa~ 184 (504)
.++..|..||.|+..-..+.. ..++..-. -+..++..+|.|++--|.+..|+++-.
T Consensus 184 ~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 184 TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 567789999999987665543 12222222 255677788888766666666555433
No 81
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=9.4 Score=45.15 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=63.7
Q ss_pred HHhcCCCCHHHHHHHHHHHH---HHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhH--HHHHH
Q 010666 123 TRQLSSEWEATRIEALHWIS---TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF--RQLVV 197 (504)
Q Consensus 123 ~~~L~s~~e~TRlaaL~WL~---~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F--~~fm~ 197 (504)
...+.+++-..|++||+=+. -++..+++.+++..+...|.+..++-+.++-+|..+.+++.++|+-.++| ++|..
T Consensus 809 ~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~ 888 (1014)
T KOG4524|consen 809 IHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLE 888 (1014)
T ss_pred HHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556788888999997665 58899999999999999999999999999999999999999999644444 34444
Q ss_pred HH
Q 010666 198 FL 199 (504)
Q Consensus 198 ~L 199 (504)
++
T Consensus 889 dv 890 (1014)
T KOG4524|consen 889 DV 890 (1014)
T ss_pred HH
Confidence 43
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.67 E-value=0.38 Score=36.33 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 132 ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 132 ~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
.+|.+|+.=|-.+-...|..+-++.+.++|.|.+.|.|++++|...+..-|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 456777766666778889999999999999999999999999999888776654
No 83
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.58 E-value=6.8 Score=39.86 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=111.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC-------------------------------------CC---chHHHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSP-------------------------------------SV---DYGRMAEILVQ 41 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~-------------------------------------~v---D~~~iI~ILv~ 41 (504)
|.|.++.+|..|-.+|.+-|.++.... .+ +..+|+..+..
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 678899999999899999999887430 11 23445555555
Q ss_pred HcCCC--ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCC-chHHHHHHHHHHHHHHHhhcC----------
Q 010666 42 RAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKAD---------- 108 (504)
Q Consensus 42 ~l~s~--e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~-~~eIR~~A~~~N~~Ll~li~~---------- 108 (504)
+...+ -...|..+...+..+++-....+-..-++++.+++..+..+ ||+-=-.+-+.+..+++...-
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~ 167 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDV 167 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 44332 24679999999999999888777777789999999877763 455334444444444432221
Q ss_pred -----------CC-C--C-----------------CCh-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh-hhhc
Q 010666 109 -----------PA-D--G-----------------FDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHF 155 (504)
Q Consensus 109 -----------~~-~--~-----------------~d~-~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~-~l~~ 155 (504)
++ + + -.| +..+..|.+.|.++...+|..+|+=|..-...|+.+ +.+|
T Consensus 168 ~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 168 FSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 11 1 0 112 355677888888888889999999999999998865 6677
Q ss_pred hhHHHHHH
Q 010666 156 LNDIFDTL 163 (504)
Q Consensus 156 ~~~lfp~L 163 (504)
+..+..+|
T Consensus 248 ~~~iw~~l 255 (262)
T PF14500_consen 248 WSTIWNAL 255 (262)
T ss_pred HHHHHHHH
Confidence 77776665
No 84
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.57 E-value=0.25 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHh
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l 105 (504)
|+..++.++.|++++||.+|..+.+.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 567888999999999999999999888763
No 85
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.42 E-value=4.6 Score=45.36 Aligned_cols=244 Identities=19% Similarity=0.220 Sum_probs=105.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHH-HHHHHhcCCccccccHHHHHHHHc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITW-INEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~W-I~efl~i~~~~llpylp~iL~~lL 81 (504)
.|.+..||.+|..-|-.|-|+ ..-..++++.||++-+++.|+. -..+++| +.+++...+. .-|.+++
T Consensus 69 EDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL~tdd~~-E~~~v~~sL~~ll~~d~k-------~tL~~lf 136 (556)
T PF05918_consen 69 EDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLLQTDDPV-ELDAVKNSLMSLLKQDPK-------GTLTGLF 136 (556)
T ss_dssp T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HH-HHHHHHHHHHHHHHH-HH-------HHHHHHH
T ss_pred hcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHHhcccHH-HHHHHHHHHHHHHhcCcH-------HHHHHHH
Confidence 477888999997444444443 2355799999999988866533 2333332 4445544433 2233333
Q ss_pred cccc---CCchHHHHHHHHHHHH-H-------------------------------------HHhhcCCC------CCCC
Q 010666 82 PCIS---DKEEKIRVVARETNEE-L-------------------------------------RAIKADPA------DGFD 114 (504)
Q Consensus 82 p~Ls---d~~~eIR~~A~~~N~~-L-------------------------------------l~li~~~~------~~~d 114 (504)
..+. ..++.||+-+.+.... + |.++.... ..-.
T Consensus 137 ~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g 216 (556)
T PF05918_consen 137 SQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEG 216 (556)
T ss_dssp HHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHH
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHH
Confidence 3332 2344455555443321 1 11111100 0011
Q ss_pred hHhHHHHHHHhcC-CC-CHHHHHHHH-HHHHHHHhhchh-----hhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 115 VGPILSIATRQLS-SE-WEATRIEAL-HWISTLLNRHRT-----EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 115 ~~~iv~vL~~~L~-s~-~e~TRlaaL-~WL~~L~~k~P~-----~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
...+++++..+.. +. -..+=..++ +|+..+..-.|- .--.|++-+..-+|+.+++=.++.-...|.++|++|
T Consensus 217 ~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s 296 (556)
T PF05918_consen 217 RQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELS 296 (556)
T ss_dssp HHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHc
Confidence 2456666666552 11 111222344 355544443331 001233334445666777777788888899999998
Q ss_pred h--c----hhhHHHHHHHHHhhccccc-------hhhhhhHHHHHHHHhhcCCh--HHH--HHHHHHhhccccChHHHHH
Q 010666 187 K--D----LQHFRQLVVFLVHNFRVDN-------SLLEKRGALIIRRLCVLLDA--ERV--YRELSTILEGEADLDFACT 249 (504)
Q Consensus 187 ~--~----~~~F~~fm~~LL~lF~~dr-------~LLe~Rg~lIIRqLC~~L~a--E~I--y~~La~iL~~~~Dl~F~~~ 249 (504)
. + .+.+..+...|+++.+... ...||= -+...+||..-+. ..+ |+....--.+..+.+|
T Consensus 297 ~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcL-L~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~--- 372 (556)
T PF05918_consen 297 PFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECL-LYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDD--- 372 (556)
T ss_dssp TT----THHHHHHHHHHHHHTTS----------HHHHHHH-HHHHHHHHTT-THHHH-----------------------
T ss_pred CCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHH-HHHHHHHhhhCcchhhhHhhhccccccccccccccc---
Confidence 2 1 3444455555555555221 223442 3477777777654 112 3333332222223344
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHh
Q 010666 250 MVQALNLILLTSSELSELRDLLKK 273 (504)
Q Consensus 250 mVq~Ln~iLLTs~El~~lR~~L~~ 273 (504)
+.-+.|||.+|.-
T Consensus 373 -----------~~~~kdf~~RL~y 385 (556)
T PF05918_consen 373 -----------AEKLKDFRERLQY 385 (556)
T ss_dssp ------------TTTHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHH
Confidence 4556888888876
No 86
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=91.33 E-value=8.5 Score=42.64 Aligned_cols=257 Identities=18% Similarity=0.236 Sum_probs=150.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCC--hHHHHHHHHHHH-HHHhcCCccccccHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTRLTAITWIN-EFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~-efl~i~~~~llpylp~iL~ 78 (504)
|+-|+..||+..-.+|..+.+.|+..+.+.+| +.-|+.....++ .++|.+++..|+ -|..+++++-..++|.++.
T Consensus 32 l~S~~~~VR~kV~eil~hin~Rik~~~~I~LP--v~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~llP~ll~ 109 (501)
T PF13001_consen 32 LASPHASVRKKVIEILSHINKRIKSNPSIQLP--VEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRELLPSLLK 109 (501)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhccCCcCcCc--HHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 56788899999999999999999987777765 455566666555 889999998875 3566677778888888888
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcC---CC---------------------------------------------
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKAD---PA--------------------------------------------- 110 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~---~~--------------------------------------------- 110 (504)
++=..-.+...-.-..+..+|..+ ++... +.
T Consensus 110 ~is~~~~~~~~~~~~~~~~f~~~~-k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~pgl 188 (501)
T PF13001_consen 110 GISKKPKQHQDSFLRLARLFNILL-KLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPNRAYACPGL 188 (501)
T ss_pred hhccCchhhhHHHHHHHHHHHHHh-hcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhccccccccccccCCCCC
Confidence 875444444444444444444332 22211 00
Q ss_pred -----CCCChHhHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHH
Q 010666 111 -----DGFDVGPILSIATRQLSS----EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 181 (504)
Q Consensus 111 -----~~~d~~~iv~vL~~~L~s----~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~L 181 (504)
..+.+...-.+....... +-.++|++.++++..-. ++.. ..|+.++=.-+|+.++|...+-++
T Consensus 189 ~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~-------f~d~-~~~~~~liAsad~~~~V~~~ae~~ 260 (501)
T PF13001_consen 189 SPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF-------FPDE-ERFPPLLIASADSNSSVSDRAEDL 260 (501)
T ss_pred CCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC-------CCcH-hHHhheeeEEeCCcchHHHHHHHH
Confidence 001111111111111111 22346777777764321 2222 455555556699999999999999
Q ss_pred HHHHhhchhhHHHHHHHHHhhcc--c---------cchhhhhhHHHHHHHHhhcCChHHHHHHHHHhh----ccc-cChH
Q 010666 182 HACIAKDLQHFRQLVVFLVHNFR--V---------DNSLLEKRGALIIRRLCVLLDAERVYRELSTIL----EGE-ADLD 245 (504)
Q Consensus 182 La~Is~~~~~F~~fm~~LL~lF~--~---------dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL----~~~-~Dl~ 245 (504)
|.+++.+ -.=..+++.|..+|. . -+.-+..| |+-.||+..-|-..+.....+. ... ++.+
T Consensus 261 LKr~~~~-~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~k---IL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~k 336 (501)
T PF13001_consen 261 LKRLSVS-LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEK---ILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSK 336 (501)
T ss_pred HhhcCCC-CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHH---HHHHHHHhHHHHhCCccHHHHHhccccCCccccc
Confidence 9999842 111356777777777 2 13334444 9999999866644444444443 332 1222
Q ss_pred HHHHHHHHH---HHHhcCch--hHHHHHHHHHh
Q 010666 246 FACTMVQAL---NLILLTSS--ELSELRDLLKK 273 (504)
Q Consensus 246 F~~~mVq~L---n~iLLTs~--El~~lR~~L~~ 273 (504)
.-+.-+|.. +++.-+.+ -+..+|.-+.+
T Consensus 337 lk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~ 369 (501)
T PF13001_consen 337 LKSLALQFIRGSSWIFKHISPQILKLLRPVILS 369 (501)
T ss_pred cchhcchhhhcchHHhhhcCHHHHHHHHHHHHh
Confidence 222222333 44444433 35667766654
No 87
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.10 E-value=20 Score=36.72 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHHHHHH-HHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHH---------
Q 010666 5 SSHEIRQQADSALWEF-LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--------- 74 (504)
Q Consensus 5 pn~eVR~~ae~lL~~F-LkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp--------- 74 (504)
++++||..|-.||+-| |=+-+. -...++++..-+...++.+|.+|++=|-.++...|...+.-.+
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 3457888888887776 322221 2345666777666668999999999999999999988777666
Q ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC-hHhHHHHHHHhcCCCC--HHHHH-HHHHHHHHHHhhc
Q 010666 75 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSSEW--EATRI-EALHWISTLLNRH 148 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d-~~~iv~vL~~~L~s~~--e~TRl-aaL~WL~~L~~k~ 148 (504)
.+++.+...+.+.+++++.+|.+--.+|+-. +.++ ...++..|....++.. +..|+ .+|.+..-.|-..
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~-----~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLS-----GRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 4999999999999999999988877665532 2233 4788876655555432 21233 4555555444433
No 88
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.89 E-value=0.44 Score=32.30 Aligned_cols=29 Identities=38% Similarity=0.483 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
++|.+++.++|++++|...+..-+.+|++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999998864
No 89
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.82 E-value=11 Score=42.45 Aligned_cols=223 Identities=18% Similarity=0.204 Sum_probs=139.0
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
.-++...+..|...+.+..-..|..|++-|+++-...|+.+..-=+++= ..++|.+..|..-|. ..|++
T Consensus 298 ~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evE----sLIsd~Nr~IstyAI---TtLLK---- 366 (898)
T COG5240 298 SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVE----SLISDENRTISTYAI---TTLLK---- 366 (898)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHH----HHhhcccccchHHHH---HHHHH----
Confidence 4468889999999999999999999999999999999886655444332 235666655444333 33333
Q ss_pred CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHH------------HhcCCC---CHH
Q 010666 109 PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL------------KALSDP---SDE 173 (504)
Q Consensus 109 ~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LL------------ksLSD~---sde 173 (504)
+|..-..+..++.+.....+-+..-++-+.+=+..|-.+.|.+-..+.+.+-..|+ ..+||. .++
T Consensus 367 TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 367 TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch
Confidence 35666678888887777776666667777777777777788776666555444433 233332 356
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHH
Q 010666 174 VVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQA 253 (504)
Q Consensus 174 Vv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~ 253 (504)
-.+++|++|+.--+ |-.|.+....+|..+..+.+=-.+-|. -||+ ||..+- | ++--.-+..||.
T Consensus 447 skEraLe~LC~fIE-Dcey~~I~vrIL~iLG~EgP~a~~P~~-yvrh---------IyNR~i--L---EN~ivRsaAv~a 510 (898)
T COG5240 447 SKERALEVLCTFIE-DCEYHQITVRILGILGREGPRAKTPGK-YVRH---------IYNRLI--L---ENNIVRSAAVQA 510 (898)
T ss_pred HHHHHHHHHHHHHh-hcchhHHHHHHHHHhcccCCCCCCcch-HHHH---------HHHHHH--H---hhhHHHHHHHHH
Confidence 67778877777554 566788888888888777432233333 3444 333321 2 333334455666
Q ss_pred HHHHhcCchhH---HHHHHHHHhhcCCc
Q 010666 254 LNLILLTSSEL---SELRDLLKKSLVNP 278 (504)
Q Consensus 254 Ln~iLLTs~El---~~lR~~L~~~l~~~ 278 (504)
|.---+|..+- ...-+.|+.|+.+.
T Consensus 511 Lskf~ln~~d~~~~~sv~~~lkRclnD~ 538 (898)
T COG5240 511 LSKFALNISDVVSPQSVENALKRCLNDQ 538 (898)
T ss_pred HHHhccCccccccHHHHHHHHHHHhhcc
Confidence 65555554332 22334555554433
No 90
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=90.81 E-value=2.7 Score=52.17 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=109.9
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHH-cCCCChHHHHHHHH--------------HHHHHHhcCCccccccHHHHHHHH
Q 010666 16 ALWEFLQEIKNSPSVDYGRMAEILVQR-AASPDEFTRLTAIT--------------WINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 16 lL~~FLkeIk~~~~vD~~~iI~ILv~~-l~s~e~~iRltaL~--------------WI~efl~i~~~~llpylp~iL~~l 80 (504)
+-+.++|.|.......=.+.+++++-. +++.++..|..+-+ ++.+...-.+..+-.|+|.+++..
T Consensus 361 l~eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL~~~f~siL~la 440 (1426)
T PF14631_consen 361 LSEAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVLKDYFPSILSLA 440 (1426)
T ss_dssp HHHHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 567788888743222111233333333 23333333333434 444444444566778999999999
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
=.+|..+++.|+.-+...=..+..... .+.=.+|+..|..|..+.+...--+||+=|..|..++|..+.+|.. .+
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~-~l 515 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFAT-FL 515 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHH-HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHH-HH
Confidence 999999999999988888777766641 1222689999999997777766678999999999999999988755 44
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
-.+|..+.+=+..=+.+...+++.++
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 45668887777777888888888887
No 91
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=22 Score=41.35 Aligned_cols=199 Identities=16% Similarity=0.183 Sum_probs=130.7
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHcCCCCh------------------HHHHHHHHHHHHHHhcCCcc----------
Q 010666 17 LWEFLQEIKNSPSVDYGRMAEILVQRAASPDE------------------FTRLTAITWINEFVKLGGDQ---------- 68 (504)
Q Consensus 17 L~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~------------------~iRltaL~WI~efl~i~~~~---------- 68 (504)
+=||+++......-.-+++|.++.+.+.++++ .++..+=..|.-++..++..
T Consensus 226 iVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~ 305 (948)
T KOG1058|consen 226 IVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLS 305 (948)
T ss_pred HHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHH
Confidence 33444444332223346677777777776652 34666666777777777531
Q ss_pred -----ccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC----CHHH---HHH
Q 010666 69 -----LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE----WEAT---RIE 136 (504)
Q Consensus 69 -----llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~----~e~T---Rla 136 (504)
...-+.++.--+|+-|+.++-+||.-|-.+- |+++. .=++.+|+..|...+... ++.+ |..
T Consensus 306 ~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~---ldLvs----srNvediv~~Lkke~~kT~~~e~d~~~~yRql 378 (948)
T KOG1058|consen 306 ELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIA---LDLVS----SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQL 378 (948)
T ss_pred HHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHH---Hhhhh----hccHHHHHHHHHHHHHhccccccccchHHHHH
Confidence 1122567778889999999999887655443 44443 356899999999888532 2222 666
Q ss_pred HHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhhccccchhhhhhHH
Q 010666 137 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF-RQLVVFLVHNFRVDNSLLEKRGA 215 (504)
Q Consensus 137 aL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F-~~fm~~LL~lF~~dr~LLe~Rg~ 215 (504)
-++=|+..-.++| ++...+.|.||+.+||..++.-.-.|..+.++-+.-..+ ...+.+|++-|+.=|.---+||.
T Consensus 379 Liktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rga 454 (948)
T KOG1058|consen 379 LIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGA 454 (948)
T ss_pred HHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhH
Confidence 6666666666665 456789999999999999888777777777765432333 36677888888766554468999
Q ss_pred HHHH-HHhhcCC
Q 010666 216 LIIR-RLCVLLD 226 (504)
Q Consensus 216 lIIR-qLC~~L~ 226 (504)
+||- --|..+.
T Consensus 455 lwi~GeYce~~~ 466 (948)
T KOG1058|consen 455 LWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHhhhH
Confidence 9663 4454444
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=90.14 E-value=8.7 Score=44.49 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcC--CccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHH------H
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR------A 104 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~--~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll------~ 104 (504)
..+++.|+..+.+.+++....+++-|..+--.. ...|. -.+++..+.+.+..+++++++.|.++...|- .
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 568889999999999998888888777664332 22332 2356666666667778888888877643221 1
Q ss_pred hhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-hhhhhhchhHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 010666 105 IKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEVH 182 (504)
Q Consensus 105 li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~-P~~~l~~~~~lfp~LLksLSD-~sdeVv~~~L~LL 182 (504)
.+.+ ..++..|+..+.+++ .|..|+.=|.++-... .+.++.+.+ -+|.+++.|-. +.++|-...+.++
T Consensus 367 ~mV~-------~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 367 QMVS-------LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSEEEVQLELIALL 436 (708)
T ss_pred HHHH-------CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCCccccHHHHHHH
Confidence 1111 123445666665543 4455665555554322 245777776 56888876554 4445544455555
Q ss_pred HHHhhch---------hhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh-H----HHHHHHHHhhccccChHHHH
Q 010666 183 ACIAKDL---------QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-E----RVYRELSTILEGEADLDFAC 248 (504)
Q Consensus 183 a~Is~~~---------~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a-E----~Iy~~La~iL~~~~Dl~F~~ 248 (504)
..++.+. +.++.+|+..++ .+|.-+++ +||+++..=++ + ..-..|++++...++-+|+-
T Consensus 437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~--~~D~lLlK-----lIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~v 509 (708)
T PF05804_consen 437 INLALNKRNAQLMCEGNGLQSLMKRALK--TRDPLLLK-----LIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVV 509 (708)
T ss_pred HHHhcCHHHHHHHHhcCcHHHHHHHHHh--cccHHHHH-----HHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence 5555332 446777766655 22333332 88999887633 2 22334566666677889988
Q ss_pred HHHHHHHHHhcCc
Q 010666 249 TMVQALNLILLTS 261 (504)
Q Consensus 249 ~mVq~Ln~iLLTs 261 (504)
-.+-+|+++-+..
T Consensus 510 E~LGiLaNL~~~~ 522 (708)
T PF05804_consen 510 ECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHhcccCC
Confidence 8999998886543
No 93
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.14 E-value=47 Score=39.42 Aligned_cols=228 Identities=14% Similarity=0.200 Sum_probs=143.5
Q ss_pred CCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHh-------hc------------CCCC--------------
Q 010666 65 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI-------KA------------DPAD-------------- 111 (504)
Q Consensus 65 ~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l-------i~------------~~~~-------------- 111 (504)
++..+.++.|.||+|++...++...|+-..--++....-++ .. ..++
T Consensus 520 ~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 520 KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEE 599 (1005)
T ss_pred CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56778899999999999999987665433322222111110 00 0000
Q ss_pred ----CCChH--------hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-chhHHHHHHHHhcCCCC-HHHHHH
Q 010666 112 ----GFDVG--------PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPS-DEVVLL 177 (504)
Q Consensus 112 ----~~d~~--------~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~~~lfp~LLksLSD~s-deVv~~ 177 (504)
..+|+ .++++|..--......-.-.|++-|..+.+..|..+-. ...-.||++-++.-+++ +++...
T Consensus 600 l~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~ 679 (1005)
T KOG2274|consen 600 LLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQN 679 (1005)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHh
Confidence 12222 22333322222222444667889999999999887543 56778999999987664 577777
Q ss_pred HHHHHHHHhh----------ch--hhHHHHHHHHHhhccccch-----hhhhhHHHHHHHHhhcCCh--HHHHHHHHHhh
Q 010666 178 VLEVHACIAK----------DL--QHFRQLVVFLVHNFRVDNS-----LLEKRGALIIRRLCVLLDA--ERVYRELSTIL 238 (504)
Q Consensus 178 ~L~LLa~Is~----------~~--~~F~~fm~~LL~lF~~dr~-----LLe~Rg~lIIRqLC~~L~a--E~Iy~~La~iL 238 (504)
+-+.++-.-+ ++ ..|..+|+.+-+++..+.. +-+.=..-+|-+...-+++ .+|.+..-.-+
T Consensus 680 ~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrm 759 (1005)
T KOG2274|consen 680 ATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRL 759 (1005)
T ss_pred HHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 7777766431 11 2366788777777664422 1111122277888888877 57888887777
Q ss_pred ccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccCh
Q 010666 239 EGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSP 295 (504)
Q Consensus 239 ~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~ 295 (504)
..-+.+.|....|-.+--...|.. ..+=+-|-. +-.+.|..=|.=+-.-||-+=
T Consensus 760 q~ae~lsviQsLi~VfahL~~t~~--~~~l~FL~S-lp~~~g~~AlefVMteW~srq 813 (1005)
T KOG2274|consen 760 QQAETLSVIQSLIMVFAHLVHTDL--DQLLNFLSS-LPGPTGEPALEFVMTEWTSRQ 813 (1005)
T ss_pred HHhhhHHHHHHHHHHHHHHhhCCH--HHHHHHHHh-CCCCCCCcHHHHHHHHHHhhh
Confidence 778888887777766666555544 445555555 667888888999999998654
No 94
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=10 Score=41.99 Aligned_cols=212 Identities=18% Similarity=0.161 Sum_probs=133.8
Q ss_pred HHHHhccCCCCc----hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCc-hHHHHH
Q 010666 20 FLQEIKNSPSVD----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-EKIRVV 94 (504)
Q Consensus 20 FLkeIk~~~~vD----~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~-~eIR~~ 94 (504)
|..+++.++.+| ++.+...+.++...++.-+|..|.+=|-...+..|+....|.+.+++++..-|-|+. .+|.-.
T Consensus 240 f~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~le 319 (533)
T KOG2032|consen 240 FFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLE 319 (533)
T ss_pred HHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHH
Confidence 555665555555 788999999999999999999999999999999999999999999999999999976 455555
Q ss_pred HHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh----HHHHHHHHhcCCC
Q 010666 95 ARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN----DIFDTLLKALSDP 170 (504)
Q Consensus 95 A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~----~lfp~LLksLSD~ 170 (504)
|-.+.......+...+-...+-++.--+...+.+++...|.+|..-.-.|...+...=-.++- +-+..++--|-|+
T Consensus 320 am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~ 399 (533)
T KOG2032|consen 320 AMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP 399 (533)
T ss_pred HHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC
Confidence 555555555554442222333455556777788999999999998887777766654332222 2233344446677
Q ss_pred CHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccc--cchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhcc
Q 010666 171 SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV--DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 240 (504)
Q Consensus 171 sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~--dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~ 240 (504)
.+-|-...=.+ -..| ..+| ..+.+-.+|.. |.. -.|....-++-|+.|++ |+..+.-.+..
T Consensus 400 ~p~va~ACr~~-~~~c--~p~l--~rke~~~~~q~~ld~~--~~~~q~Fyn~~c~~L~~--i~~d~l~~~~t 462 (533)
T KOG2032|consen 400 NPYVARACRSE-LRTC--YPNL--VRKELYHLFQESLDTD--MARFQAFYNQWCIQLNH--IHPDILMLLLT 462 (533)
T ss_pred ChHHHHHHHHH-HHhc--Cchh--HHHHHHHHHhhhhHHh--HHHHHHHHHHHHHHHhh--hCHHHHHHHHH
Confidence 77554322211 1222 1111 11222222221 211 11444566777888887 66666655543
No 95
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=50 Score=39.08 Aligned_cols=204 Identities=18% Similarity=0.253 Sum_probs=142.3
Q ss_pred CCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhchhhhhhchh-HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhh
Q 010666 111 DGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSD-PSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~~l~~~~-~lfp~LLksLSD-~sdeVv~~~L~LLa~Is~ 187 (504)
..|.+..+|.+|+.-|.++ +-+.-+-|-+=|..|.+-+|...---.+ +.+|+++..|-- +--+|-+.+|+-|..||.
T Consensus 205 s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 205 SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR 284 (1051)
T ss_pred ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 4688999999999999866 4667888999999999999998754433 577888766542 335788889999999983
Q ss_pred --chhhHH--HHHHHH--HhhccccchhhhhhHHH-HHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcC
Q 010666 188 --DLQHFR--QLVVFL--VHNFRVDNSLLEKRGAL-IIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 188 --~~~~F~--~fm~~L--L~lF~~dr~LLe~Rg~l-IIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
+..-++ ..|..| +++|+..- .|.++ |.-+.|+.+.+ ++..|+--.|=+|..+|=.
T Consensus 285 ~H~~AiL~AG~l~a~LsylDFFSi~a----QR~AlaiaaN~Cksi~s--------------d~f~~v~ealPlL~~lLs~ 346 (1051)
T KOG0168|consen 285 RHPKAILQAGALSAVLSYLDFFSIHA----QRVALAIAANCCKSIRS--------------DEFHFVMEALPLLTPLLSY 346 (1051)
T ss_pred hccHHHHhcccHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCC--------------ccchHHHHHHHHHHHHHhh
Confidence 122222 233333 67888663 35555 89999999998 6777765555555444321
Q ss_pred chhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHHHHHHH---
Q 010666 261 SSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRL--- 337 (504)
Q Consensus 261 s~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVqL--- 337 (504)
.|++.+ .+ ..++||=++.++.|--+.++.++. -+++.++-+|+-+
T Consensus 347 -----------------~D~k~i---es--------~~ic~~ri~d~f~h~~~kLdql~s----~dLi~~~~qLlsvt~t 394 (1051)
T KOG0168|consen 347 -----------------QDKKPI---ES--------VCICLTRIADGFQHGPDKLDQLCS----HDLITNIQQLLSVTPT 394 (1051)
T ss_pred -----------------ccchhH---HH--------HHHHHHHHHHhcccChHHHHHHhc----hhHHHHHHHHHhcCcc
Confidence 222111 11 245677788999999999988874 4566777777654
Q ss_pred -hhchhhHH-HHHHhcCCCCChhHHHHHH
Q 010666 338 -LETPIFAY-LRLQLLEPGRYTWLLKALY 364 (504)
Q Consensus 338 -lESPiF~~-LRLqLLep~~~p~L~k~Ly 364 (504)
|+.+.|+- .||-.+=....|-++++||
T Consensus 395 ~Ls~~~~~~vIrmls~msS~~pl~~~tl~ 423 (1051)
T KOG0168|consen 395 ILSNGTYTGVIRMLSLMSSGSPLLFRTLL 423 (1051)
T ss_pred cccccchhHHHHHHHHHccCChHHHHHHH
Confidence 78888875 4666666677899999988
No 96
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.63 E-value=11 Score=41.46 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC
Q 010666 32 YGRMAEILVQRAAS-PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 110 (504)
Q Consensus 32 ~~~iI~ILv~~l~s-~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~ 110 (504)
|++|...+.+-++. .++-++..|++-|++++.-.+..|..+.---+.-+|-+=.|.++++-.+|.+.....+.-.
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~---- 402 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH---- 402 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh----
Confidence 88888888888887 6677899999999999999999999999999999999999999888777777765554433
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh-hhhhchhHHHHHHHHhcCCCCHHHHHHHHH----HHHHH
Q 010666 111 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLE----VHACI 185 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~-~~l~~~~~lfp~LLksLSD~sdeVv~~~L~----LLa~I 185 (504)
..+..|+ ++...+.+.++++-+++++-+..+.+.-+. ++....+++.|.+++.--..|-.|+.-+.- +...+
T Consensus 403 --~P~~~I~-~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 403 --LPLQCIV-NISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred --CchhHHH-HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 2234444 445555568889999999999888888775 556789999999999987777777776653 33444
Q ss_pred hh--chhhHH---HHHHHHHhhc
Q 010666 186 AK--DLQHFR---QLVVFLVHNF 203 (504)
Q Consensus 186 s~--~~~~F~---~fm~~LL~lF 203 (504)
+. =+.||. .-..+|+++|
T Consensus 480 G~~~mePhL~~Lt~sk~~LlqlY 502 (516)
T KOG2956|consen 480 GMEEMEPHLEQLTSSKLNLLQLY 502 (516)
T ss_pred hHHhhhhHhhhccHHHHHHHHHH
Confidence 41 234443 3344455544
No 97
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.52 E-value=5.3 Score=45.58 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=94.9
Q ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChH-hHH
Q 010666 41 QRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG-PIL 119 (504)
Q Consensus 41 ~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~-~iv 119 (504)
+-++-.+++.|..-..=|.+-+..=+++++.+ .++..++-.++..+ +|..+..-|++..+.... -+|+ .++
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~--kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~-~eyq~~i~ 332 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLDNFPEEIIAS--KVLPILLAALEFGD-----AASDFLTPLFKLGKDLDE-EEYQVRII 332 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhhccc-----cchhhhhHHHHhhhhccc-cccccchh
Confidence 34455555555555555555444444444443 44444444444444 566666666666654322 2243 577
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 120 SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 120 ~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.+|.+.|...+..+|+-=|.-+..+.+.-+.+++ .+.+||.+.--+.|.++.++...+..++.++
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999888888877755 5789999999999999999999999988887
No 98
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.34 E-value=6.2 Score=46.31 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=115.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCch-HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~-~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
+-|.|-.|-..|.++|...=+..... .-+| ....|.+..++...-.+.|-.++.=+..+.. ...+.++...|
T Consensus 304 ~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I 376 (815)
T KOG1820|consen 304 LKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAI 376 (815)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHH
Confidence 46888887777777777766655543 2233 4467888999998888888888888888888 34467888899
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhc-CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKA-DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~-~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
+-.+.+.+|.+|..+...-...++... .......+..++..++.+-.+...++|.||++=+.-+.+..+++++.
T Consensus 377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998888777777665 33445667888899999999999999999999999999999877653
No 99
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.00 E-value=14 Score=41.77 Aligned_cols=157 Identities=12% Similarity=0.170 Sum_probs=107.9
Q ss_pred CCCchHHHHHHHHHHcCCCChHH-HHHHHHHH-HHHHhcCCccccccHHHHHHHHcc-cccC-CchHHHHHHHHHHHHHH
Q 010666 28 PSVDYGRMAEILVQRAASPDEFT-RLTAITWI-NEFVKLGGDQLVPYYADILGAILP-CISD-KEEKIRVVARETNEELR 103 (504)
Q Consensus 28 ~~vD~~~iI~ILv~~l~s~e~~i-RltaL~WI-~efl~i~~~~llpylp~iL~~lLp-~Lsd-~~~eIR~~A~~~N~~Ll 103 (504)
|+--++.++.+++.+.+..+|.. +.-++.-+ .-..+.+|++++.-...||-+|.. .++. ++..+|-+|.++.-+=+
T Consensus 127 p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 127 PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 34558999999999999887653 33333333 334566777888776666666543 3333 45679999998877745
Q ss_pred HhhcCCCCCCChHhH----HHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHH-HhcCCCCHHHHHHH
Q 010666 104 AIKADPADGFDVGPI----LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL-KALSDPSDEVVLLV 178 (504)
Q Consensus 104 ~li~~~~~~~d~~~i----v~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LL-ksLSD~sdeVv~~~ 178 (504)
..|++ .++++.- +.+.++--..++++.+-+|..-+.-+...|=+-|-+|+++.+-++. ..+..+.|+|-..+
T Consensus 207 ~fv~~---nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qa 283 (858)
T COG5215 207 MFVQG---NFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQA 283 (858)
T ss_pred HHHHH---hhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 55543 4555443 3445555567778888777766666555555557788888766555 56778899999999
Q ss_pred HHHHHHHhh
Q 010666 179 LEVHACIAK 187 (504)
Q Consensus 179 L~LLa~Is~ 187 (504)
.+.|+.||+
T Consensus 284 vEfWstice 292 (858)
T COG5215 284 VEFWSTICE 292 (858)
T ss_pred HHHHHHHHH
Confidence 999999994
No 100
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.82 E-value=5 Score=48.39 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC--C
Q 010666 35 MAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA--D 111 (504)
Q Consensus 35 iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~--~ 111 (504)
+++++...++.-. ...+..|+.-+.++-..-.++. -+.++|.-++-++.|++.+||-.|..+..+++..|++.+ +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 6777777776544 6789999999999887755432 245666667788999999999999999999999998732 1
Q ss_pred -CCChHhHHHHHHHhcCC-CCHHHHHH
Q 010666 112 -GFDVGPILSIATRQLSS-EWEATRIE 136 (504)
Q Consensus 112 -~~d~~~iv~vL~~~L~s-~~e~TRla 136 (504)
.+=.+=+...|...+.+ +.+-+|+|
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRia 527 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIA 527 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhh
Confidence 12223344556655555 44555654
No 101
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.31 E-value=11 Score=46.52 Aligned_cols=145 Identities=11% Similarity=0.125 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
|+.++..++.-++.+-.-+|-.|++-+..+++++|..+. -|++..+|-.-+.|+...||++|...-+.+.-..++.
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~-- 889 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL-- 889 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH--
Confidence 567788888888877788999999999999999887443 3899999999999999999999999988776555431
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
+...-.-+.....++.+.+|--|++=+..++...|+- +-...+..-+|...+|+...|..++.+++-+.
T Consensus 890 ---~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 890 ---IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred ---HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 2344456777888999999999999999999999863 44456667778888898887888888776663
No 102
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.20 E-value=4.7 Score=34.62 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHH
Q 010666 118 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV 197 (504)
Q Consensus 118 iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~ 197 (504)
+.+.....+.+....+|.-+|.=|..|.++.. ......+.++..++..|.|++.=|-..+++.++.++. .+=+.++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~--~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD--RHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH--HChHHHHH
Confidence 44555667788899999999999999999887 4445678999999999999999999999999999973 22235777
Q ss_pred HHHhhcccc
Q 010666 198 FLVHNFRVD 206 (504)
Q Consensus 198 ~LL~lF~~d 206 (504)
.|++.|.+.
T Consensus 81 ~L~~~y~~~ 89 (92)
T PF10363_consen 81 ILLDEYADP 89 (92)
T ss_pred HHHHHHhCc
Confidence 777777643
No 103
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=15 Score=41.07 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHcccc
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCI 84 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD-~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~iL~~lLp~L 84 (504)
-+|+++= +|..|-+-=..+|.+| ...++|+|...+++.|+++. +-..|.-..+.-.+.+-+.. -.+++..+.++|
T Consensus 211 ~lRn~tW-~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl-~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 211 MLRNATW-TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL-TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred HHHHHHH-HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 5666663 7777665443344554 78999999999999999998 45557666666555444433 346777788889
Q ss_pred cCCchHHHHHHHHHHHH-------HHHhhcCCCCCCChHhHHHHHHHhcCCCCHH-HHHHHHHHHH-HHHhhchhhhhhc
Q 010666 85 SDKEEKIRVVARETNEE-------LRAIKADPADGFDVGPILSIATRQLSSEWEA-TRIEALHWIS-TLLNRHRTEVLHF 155 (504)
Q Consensus 85 sd~~~eIR~~A~~~N~~-------Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~-TRlaaL~WL~-~L~~k~P~~~l~~ 155 (504)
.++.+.++.-|.++-+. ..+.+ +| ...+.+|...+..+.+. .|-+| -|.+ -+-.-.++.+-..
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~v------i~-~~~L~~l~~ll~~s~~~~ikkEA-cW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVV------IN-SGALPVLSNLLSSSPKESIKKEA-CWTISNITAGNQEQIQAV 360 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHH------Hh-cChHHHHHHHhccCcchhHHHHH-HHHHHHhhcCCHHHHHHH
Confidence 99888777666665432 11111 11 23455666667644444 45444 3544 4444444455443
Q ss_pred -hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 156 -LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 156 -~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
..+++|.|+..|+..+-++...+.=.++.+++
T Consensus 361 ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 361 IDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 34899999999999888899999888888874
No 104
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.10 E-value=12 Score=39.88 Aligned_cols=179 Identities=22% Similarity=0.323 Sum_probs=115.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC---CCchHHHHHHHHHHcCC---CChHHHHHHHHHHHHHHhcCCccccccHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSP---SVDYGRMAEILVQRAAS---PDEFTRLTAITWINEFVKLGGDQLVPYYAD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~---~vD~~~iI~ILv~~l~s---~e~~iRltaL~WI~efl~i~~~~llpylp~ 75 (504)
|+|+ ++||.+|=-++.-++.+-..-. ... +++++.++=. +.+.=|.-|++-++.|+++.+. .-.+-..
T Consensus 35 L~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~----id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~~~~ 108 (371)
T PF14664_consen 35 LSDS-KEVRAAGYRILRYLISDEESLQILLKLH----IDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEIPRG 108 (371)
T ss_pred CCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcC----CchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccCCHH
Confidence 5566 9999999877766655443110 111 3344444422 2355588999999999999431 1112457
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHh-----------------hcC-------------------C------CCCC
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAI-----------------KAD-------------------P------ADGF 113 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l-----------------i~~-------------------~------~~~~ 113 (504)
++.++.-+..+++...|.+|-++.-+++-. +.+ + ..++
T Consensus 109 vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~ 188 (371)
T PF14664_consen 109 VVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGF 188 (371)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCc
Confidence 888888888888888999988887665521 111 1 2357
Q ss_pred ChHhHHHHHHHh----cCCCCHHHHHHHH-HHHHHHHhhchhhhh-hchh-HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 114 DVGPILSIATRQ----LSSEWEATRIEAL-HWISTLLNRHRTEVL-HFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 114 d~~~iv~vL~~~----L~s~~e~TRlaaL-~WL~~L~~k~P~~~l-~~~~-~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
|++.++...+.. ..++.+..|+.+- .=+..+++-.|.-|. ...+ +-+..|+.+|.-++++|....++++-++=
T Consensus 189 dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 189 DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 788888877776 2222322355333 455556666655442 3333 67888999999999999999999988875
No 105
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.89 E-value=20 Score=39.55 Aligned_cols=133 Identities=22% Similarity=0.207 Sum_probs=92.7
Q ss_pred HHHHHhhcCCCCC---CChHhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHH
Q 010666 100 EELRAIKADPADG---FDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 175 (504)
Q Consensus 100 ~~Ll~li~~~~~~---~d~~~iv~vL~~~L~s-~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv 175 (504)
.++++++.+.+.. -.|+.++..+.+-+.+ .++-.|.-||+=|.......|.++++..+-....+|.+-.|+.++|+
T Consensus 309 sel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~ 388 (516)
T KOG2956|consen 309 SELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVM 388 (516)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHH
Confidence 4455555543221 2378888888888886 67778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHhh-ccccchhhhhhHHHHH---HHHhhcCChHHHHHHHHHh
Q 010666 176 LLVLEVHACIAKDLQHFRQLVVFLVHN-FRVDNSLLEKRGALII---RRLCVLLDAERVYRELSTI 237 (504)
Q Consensus 176 ~~~L~LLa~Is~~~~~F~~fm~~LL~l-F~~dr~LLe~Rg~lII---RqLC~~L~aE~Iy~~La~i 237 (504)
..|-+-...+...-.-|..+ .++-.+ ...| +.|+..+| .++|..+.+|.+-..+.++
T Consensus 389 ~~Aeed~~~~las~~P~~~I-~~i~~~Ilt~D----~~~~~~~iKm~Tkl~e~l~~EeL~~ll~di 449 (516)
T KOG2956|consen 389 RVAEEDCLTTLASHLPLQCI-VNISPLILTAD----EPRAVAVIKMLTKLFERLSAEELLNLLPDI 449 (516)
T ss_pred HHHHHHHHHHHHhhCchhHH-HHHhhHHhcCc----chHHHHHHHHHHHHHhhcCHHHHHHhhhhh
Confidence 98876644443211112211 222111 1233 45677766 6888888887666655554
No 106
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.67 E-value=2.7 Score=44.90 Aligned_cols=216 Identities=19% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCCcHHHHHHHHHHHH------HHHHHhccCCCCchHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCccccccHHH
Q 010666 3 SDSSHEIRQQADSALW------EFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYAD 75 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~------~FLkeIk~~~~vD~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llpylp~ 75 (504)
-|++..|+=+|-..|. ++..+|+... =+|.+++-++++- |.+ +..+--|+.+---+..+.+--=.+
T Consensus 261 d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag------~lP~lv~Llqs~~~pli-lasVaCIrnisihplNe~lI~dag 333 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASDTEYQREIVEAG------SLPLLVELLQSPMGPLI-LASVACIRNISIHPLNEVLIADAG 333 (550)
T ss_pred hCCChHHHHHHHHHHhhhcccchhhhHHHhcC------CchHHHHHHhCcchhHH-HHHHHHHhhcccccCcccceeccc
Confidence 4677777777766665 3445554332 2455555555442 222 122223333322233333333456
Q ss_pred HHHHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhchhhh
Q 010666 76 ILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEV 152 (504)
Q Consensus 76 iL~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~--e~TRlaaL~WL~~L~~k~P~~~ 152 (504)
+|.-+...|...+ +||+-.|..+...|...-......+-=...+.-+...+.+.. .+.++.+--=..-+-+.....+
T Consensus 334 fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~l 413 (550)
T KOG4224|consen 334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEAL 413 (550)
T ss_pred chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHH
Confidence 7777777787765 559988888887776532221111111223445555555554 4455655433444444444443
Q ss_pred hhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHH
Q 010666 153 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYR 232 (504)
Q Consensus 153 l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~ 232 (504)
+ ..+++|.|.+-+-|.+.||.-.+-.-|...|++.+++.+|+... |++.=.-+| +.+|-+.. -|--|+
T Consensus 414 l--d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEaw------d~P~~gi~g-~L~Rfl~S---~~~tf~ 481 (550)
T KOG4224|consen 414 L--DSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAW------DHPVQGIQG-RLARFLAS---HELTFR 481 (550)
T ss_pred h--hcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHh------cCcchhHHH-HHHHHHhh---hHHHHH
Confidence 3 34789999999999999999999999999999999999998754 444423343 33443332 355677
Q ss_pred HHHHh
Q 010666 233 ELSTI 237 (504)
Q Consensus 233 ~La~i 237 (504)
.++.|
T Consensus 482 hia~w 486 (550)
T KOG4224|consen 482 HIARW 486 (550)
T ss_pred HHHHH
Confidence 77776
No 107
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.92 E-value=12 Score=43.42 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=100.4
Q ss_pred CccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010666 66 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 145 (504)
Q Consensus 66 ~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~ 145 (504)
...+...-+.++.+++..|+.++.-|-..|..+-+.|++. +...-..++..|..-+.+-.+..--|+.-||+-=|
T Consensus 420 A~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~-----~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 420 ASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK-----DPAEHLEILFQLARLLDTILVPAARAGIIWLIGEY 494 (968)
T ss_pred HHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh-----ChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence 3445667788888888888888877777777666666553 22234556667777776666666778888886544
Q ss_pred hhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhccccch-hhhhhHHHHHHHHhh
Q 010666 146 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNS-LLEKRGALIIRRLCV 223 (504)
Q Consensus 146 ~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~dr~-LLe~Rg~lIIRqLC~ 223 (504)
--. +.....+++.-+-++++|+.++|....|.+-+++= .+.+.++...+-.+++=+-|-. -...| +-+.|+|-.
T Consensus 495 ~e~---vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDR-aRF~r~l~~ 570 (968)
T KOG1060|consen 495 CEI---VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDR-ARFLRQLIS 570 (968)
T ss_pred hhh---cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHH-HHHHHHHhc
Confidence 322 44445566667779999999999999999999876 5667788887777666655521 12333 335666543
No 108
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=85.44 E-value=73 Score=37.33 Aligned_cols=95 Identities=21% Similarity=0.154 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHH--HHhcC---------CCCHHHHHHHH----------HH---HHH
Q 010666 88 EEKIRVVARETNEELRAIKADPADGFDVGPILSIA--TRQLS---------SEWEATRIEAL----------HW---IST 143 (504)
Q Consensus 88 ~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL--~~~L~---------s~~e~TRlaaL----------~W---L~~ 143 (504)
-+++|.+|+.|- +++|.+.-...|--+.++.| +.+++ +.+-..+++.| -| ...
T Consensus 244 ieelR~aac~ci---laiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnse 320 (980)
T KOG2021|consen 244 IEELRIAACNCI---LAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSE 320 (980)
T ss_pred HHHHHHHHHHHH---HHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhc
Confidence 477888888775 45555444444444555555 22221 12233466665 12 123
Q ss_pred HHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 144 LLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 144 L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
+-.++....+.....++|-+|.-|+|+.|++..+...-|+..
T Consensus 321 ld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy 362 (980)
T KOG2021|consen 321 LDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY 362 (980)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 333344455566666899999999999998888777766554
No 109
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.37 E-value=2.6 Score=36.20 Aligned_cols=71 Identities=17% Similarity=0.355 Sum_probs=59.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 73 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl 73 (504)
|.||.+-||..+=..|.++++.=. .+..+.+.++.++...+..+|+++=+.||+=+..+....|..+++.+
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 689999999988877877776433 24678999999999999999999999999999999998887665543
No 110
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=84.39 E-value=56 Score=34.09 Aligned_cols=142 Identities=13% Similarity=0.206 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhhhchh----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-----ch----hhHHH
Q 010666 128 SEWEATRIEALHWISTLLNRHRTEVLHFLN----DIFDTLLKALSDPSDEVVLLVLEVHACIAK-----DL----QHFRQ 194 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~----~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-----~~----~~F~~ 194 (504)
.+-++-|..-.++|..+.+.++..++..-+ .++..++-.+.++..+|...+|+.+..+-+ ++ .+|+.
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~ 210 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQ 210 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345778889899999999999888876544 455566677889999999999999888762 11 23333
Q ss_pred ----HHHHHHhhc-cccch-hhhhhHHHHHHHHhhc---------------CChHHHHHHHHHhhccc-c--ChHHHHHH
Q 010666 195 ----LVVFLVHNF-RVDNS-LLEKRGALIIRRLCVL---------------LDAERVYRELSTILEGE-A--DLDFACTM 250 (504)
Q Consensus 195 ----fm~~LL~lF-~~dr~-LLe~Rg~lIIRqLC~~---------------L~aE~Iy~~La~iL~~~-~--Dl~F~~~m 250 (504)
++...+... .++++ -++. -..++++|... -|.+-|...+++.|.+. . +..=+...
T Consensus 211 y~~~il~~if~vltD~~Hk~gf~~-q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~f 289 (319)
T PF08767_consen 211 YYLDILQDIFSVLTDSDHKSGFKL-QSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENF 289 (319)
T ss_dssp HHHHHHHHHHHHHHSTT-GGGHHH-HHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccHHHHHH-HHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 333333321 22222 1222 23477777743 22455666677776543 1 22222222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHh
Q 010666 251 VQALNLILLTSSELSELRDLLKK 273 (504)
Q Consensus 251 Vq~Ln~iLLTs~El~~lR~~L~~ 273 (504)
|+.| .=...+..+||..||+
T Consensus 290 v~~L---f~~~~d~~~Fk~~lrD 309 (319)
T PF08767_consen 290 VQGL---FELNNDPEKFKTHLRD 309 (319)
T ss_dssp HHHH---HHTTT-HHHHHHHHHH
T ss_pred HHHH---HHhcCCHHHHHHHHHH
Confidence 2221 1123357888888887
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=84.36 E-value=52 Score=33.67 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=88.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|++..||..|...++ .++-...++.|...+...++.+|-.++. .+-.+.. |.-+..+.
T Consensus 52 l~~~~~~vr~~aa~~l~----------~~~~~~av~~l~~~l~d~~~~vr~~a~~---aLg~~~~-------~~a~~~li 111 (335)
T COG1413 52 LEDEDLLVRLSAAVALG----------ELGSEEAVPLLRELLSDEDPRVRDAAAD---ALGELGD-------PEAVPPLV 111 (335)
T ss_pred HcCCCHHHHHHHHHHHh----------hhchHHHHHHHHHHhcCCCHHHHHHHHH---HHHccCC-------hhHHHHHH
Confidence 45677778877765532 3344567899999999999988888777 4444433 45556666
Q ss_pred cccc-CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh-hhh-chhH
Q 010666 82 PCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLH-FLND 158 (504)
Q Consensus 82 p~Ls-d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~-~l~-~~~~ 158 (504)
++++ |++..||..|..+...+-. ...+..+...+.++....-.+++.|........... +.. ....
T Consensus 112 ~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~ 180 (335)
T COG1413 112 ELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE 180 (335)
T ss_pred HHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh
Confidence 6666 7888999888887654211 111222222222222111111111110011111111 111 2234
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhch
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAKDL 189 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~ 189 (504)
..+.+...+.|....|...+..-+..++.+.
T Consensus 181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 181 AIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 5667777788888888888888888887544
No 112
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.25 E-value=9.4 Score=41.40 Aligned_cols=109 Identities=16% Similarity=0.021 Sum_probs=69.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|++++||.++-..|+ .+.-+...+.|+.-+.+.+++.|..++.=+.. .-.+-...+.
T Consensus 95 L~d~~~~vr~aaa~ALg----------~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~ 153 (410)
T TIGR02270 95 LQAGPEGLCAGIQAALG----------WLGGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALE 153 (410)
T ss_pred hcCCCHHHHHHHHHHHh----------cCCchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHH
Confidence 45556666666655554 23345566777777788888888776633322 1122234677
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIS 142 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~ 142 (504)
+.|.|+++.||..|..+...+- -...+..|...+.+.++.+|.+|+.=+.
T Consensus 154 ~~L~d~d~~Vra~A~raLG~l~-----------~~~a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 154 AALTHEDALVRAAALRALGELP-----------RRLSESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred HHhcCCCHHHHHHHHHHHHhhc-----------cccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7778999999988888876532 1233444666688899999988876553
No 113
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=84.07 E-value=24 Score=36.93 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=97.8
Q ss_pred CccccccHHHHHHHHcccccCCch-HHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 66 GDQLVPYYADILGAILPCISDKEE-KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 144 (504)
Q Consensus 66 ~~~llpylp~iL~~lLp~Lsd~~~-eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L 144 (504)
....+|+=-.+=..+-+||+-.-| .|-+-|-++=+..++.+...+=.-|+.--..-|-..+...+..+|-.-|+=+...
T Consensus 45 ~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~ 124 (307)
T PF04118_consen 45 QFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKY 124 (307)
T ss_pred CCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345667766677778888877654 4888899998888888865332233333334466666677888999999988888
Q ss_pred HhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhH
Q 010666 145 LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHF 192 (504)
Q Consensus 145 ~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F 192 (504)
+-.-+..+.+...+++..+|+.|-|+..|+-.++++++.++++ ++++|
T Consensus 125 ~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F 174 (307)
T PF04118_consen 125 YLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYF 174 (307)
T ss_pred hcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHH
Confidence 8777889999999999999999999999999999999999983 45554
No 114
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.65 E-value=11 Score=42.74 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=100.4
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh--cCCc-cccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHh
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK--LGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~--i~~~-~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l 105 (504)
..+|.+.+++++.-=. ++-+--..++.+..|+. .+++ +=..+...++..++.-+..++..||.-++++...++..
T Consensus 44 ~~~flr~vn~IL~~Kk--~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~ 121 (885)
T COG5218 44 SEEFLRVVNTILACKK--NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV 121 (885)
T ss_pred HHHHHHHHHHhhcccc--CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh
Confidence 3456677776654322 34444456677777776 2211 12567778888888889999999999999999988888
Q ss_pred hcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHH
Q 010666 106 KADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 180 (504)
Q Consensus 106 i~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~ 180 (504)
|.+-.+.+ +.-.+.-|..++.+-...+|+.|+.-|.-+.+...++= .+.-.+|-.++.. |||+||...+|-
T Consensus 122 v~eIDe~l-~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqn--DPS~EVRr~all 192 (885)
T COG5218 122 VREIDEVL-ANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-NRIVNLLKDIVQN--DPSDEVRRLALL 192 (885)
T ss_pred cchHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhc--CcHHHHHHHHHH
Confidence 86622211 45556677788888888899999988887776554332 2333466666665 999999998864
No 115
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=10 Score=40.76 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=94.6
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhH
Q 010666 39 LVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI 118 (504)
Q Consensus 39 Lv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~i 118 (504)
|+.+.+.-+-..|..|+.=|...+.=-+..+..++..++..+.+.+.|.+..+|..+-+.+..++-.... .+.+++
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~----e~~sp~ 138 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK----EDQSPM 138 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch----hhhcch
Confidence 3445555566789999999999888888888889999999999999999999999999998886654432 226667
Q ss_pred HHHHHHhc----CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 119 LSIATRQL----SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 119 v~vL~~~L----~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
+..+..+. .+..++.|.-++..+..|.+.+|..+......+++
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~ 185 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILE 185 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHH
Confidence 77666655 46788899999999999999999888766655433
No 116
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.56 E-value=3.5 Score=44.33 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=61.9
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHh
Q 010666 87 KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 166 (504)
Q Consensus 87 ~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLks 166 (504)
.+.++|...-.+...+++-++..--.-+++.++..|.+-+..++...+.++|+=+..+.+..|+-+-+|.+.++|.||+.
T Consensus 335 ~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 335 ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555554332122456888999999999999999999999999999999999999999999999873
No 117
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.16 E-value=37 Score=32.54 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=80.2
Q ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 75 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
.++..|+.+.-+++..+|..|.++-+..++ .+-++-...+..|+-...|+++.+|-.|..=+..+++|+|.-+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555667778888999999988765544 234556778888888888999999999999999999999876653
Q ss_pred -chhHHHHH--HHHhcC-CCCHHH---HHHHHHHHHHHh-hchhhHHHHHHHHHhhccccc
Q 010666 155 -FLNDIFDT--LLKALS-DPSDEV---VLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDN 207 (504)
Q Consensus 155 -~~~~lfp~--LLksLS-D~sdeV---v~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~dr 207 (504)
+.+++--+ .-+.+. |..... ...-+.-|-.+. ++.++=++|+..|++.|..+.
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhc
Confidence 33332211 111111 211111 222333333333 355666666666666666554
No 118
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.86 E-value=39 Score=34.50 Aligned_cols=140 Identities=11% Similarity=0.153 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccc----cc--cHHHHHHHHccccc--------CCchHHHHHHHH
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL----VP--YYADILGAILPCIS--------DKEEKIRVVARE 97 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~l----lp--ylp~iL~~lLp~Ls--------d~~~eIR~~A~~ 97 (504)
.+-++|.++.-+...++.+|...+.=+..|++-.+... .. ..+-+-+++.||+. ++...+=.+|-.
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 56788888888888899999999999999999655444 33 47888999999999 566778888888
Q ss_pred HHHHHHHhhcCCCC---CCChHhHHHH-HHHhcC-CC---CHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCC
Q 010666 98 TNEELRAIKADPAD---GFDVGPILSI-ATRQLS-SE---WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 169 (504)
Q Consensus 98 ~N~~Ll~li~~~~~---~~d~~~iv~v-L~~~L~-s~---~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD 169 (504)
|...|++.....+. .-.+.+++.. +...+. -. ++..+.+.++=+..+.+.-+-....|...++|.+...+.+
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 88888887643222 2346666642 333333 22 4777888889999999999999999999999999998887
Q ss_pred CC
Q 010666 170 PS 171 (504)
Q Consensus 170 ~s 171 (504)
+.
T Consensus 277 pf 278 (282)
T PF10521_consen 277 PF 278 (282)
T ss_pred CC
Confidence 63
No 119
>PF14750 INTS2: Integrator complex subunit 2
Probab=81.54 E-value=1.4e+02 Score=36.53 Aligned_cols=269 Identities=14% Similarity=0.162 Sum_probs=137.9
Q ss_pred HHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHH---------hh-----------c-----------
Q 010666 59 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA---------IK-----------A----------- 107 (504)
Q Consensus 59 ~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~---------li-----------~----------- 107 (504)
.++.+.+++++=||+|-++...|-.--|..++-.+.=..+...|.. +. +
T Consensus 2 ~~l~~~~~~eir~~LP~lvr~sl~~~~d~s~~~~~~~k~~l~~l~~~e~vn~i~~~~svdf~~le~d~~ke~~~r~k~~~ 81 (1049)
T PF14750_consen 2 DKLASCSEEEIRPLLPCLVRMSLCSPLDQSQEWAENRKQLLSLLSGIEVVNSIVQLLSVDFHALEQDLKKEQQLRKKLGH 81 (1049)
T ss_pred cchhhCCHHhhhHhhHHHHHHHhcCcccccHHHHHHHHHHHHHhhchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhcc
Confidence 4566778888999999999988877777654422221111111110 00 0
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHH--HHHHHHHhh--ch-------hhhhh---c---hhHHHHHHHHhcCCC
Q 010666 108 DPADGFDVGPILSIATRQLSSEWEATRIEAL--HWISTLLNR--HR-------TEVLH---F---LNDIFDTLLKALSDP 170 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL--~WL~~L~~k--~P-------~~~l~---~---~~~lfp~LLksLSD~ 170 (504)
..++....+.+-+-+...|..+++.-|+-.. +|+...... +. .++++ | ...+++.++..|-+-
T Consensus 82 ~~~~~~~~~~~~~~~~~~FE~~~~~~k~rlVlsELl~l~~~~~~~~~~~~~~~s~lfd~~iy~eEv~~il~i~~~~lPsl 161 (1049)
T PF14750_consen 82 SENESILIESLQNGIALEFERSDPARKLRLVLSELLALMSQVSKSNDESSLKSSELFDNEIYLEEVSDILCIAQAELPSL 161 (1049)
T ss_pred ccccccchhhcccccccccccCchhhHHHHHHHHHHHHHHHHHhcccccccCcchhhcccccHHHHHHHHHHHHHhCccc
Confidence 0123344444555566677666666655433 566666553 11 22221 1 223555555554332
Q ss_pred --CHHHHHHHH------HHHHHHh-hchhhHHHHHHHHHhhcc-cc-chhhhhhHHHHHHHHhhcCChHHHHHHHHHhhc
Q 010666 171 --SDEVVLLVL------EVHACIA-KDLQHFRQLVVFLVHNFR-VD-NSLLEKRGALIIRRLCVLLDAERVYRELSTILE 239 (504)
Q Consensus 171 --sdeVv~~~L------~LLa~Is-~~~~~F~~fm~~LL~lF~-~d-r~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~ 239 (504)
-++|+...| .++..+. .+.+.|..++..|+..-. .| ...-+++-+.+++.||..=+. -.-+..+.+++
T Consensus 162 L~i~~v~~aLL~v~nGp~li~~LvaN~Pd~f~~vv~~LI~~~e~~de~s~~gr~R~~~L~~L~~m~Ps-~a~~ir~~~ve 240 (1049)
T PF14750_consen 162 LPIEEVVEALLHVPNGPWLICRLVANMPDSFEEVVNSLISNGERQDEESSRGRQRNETLRKLCKMNPS-QALRIRSKCVE 240 (1049)
T ss_pred CCHHHHHHHHHcccccHHHHHHHHhcCchhHHHHHHHHHhccccccccccchHHHHHHHHHHHHhChH-HHHHHHHHHHH
Confidence 257777666 5566654 678999999999997541 22 222233337799999985443 11112222222
Q ss_pred cccC-----------h-HHHHHHHHHHHHHhc--CchhHHHHHHHHHhhcCCcch----hHHHHHHHH------------
Q 010666 240 GEAD-----------L-DFACTMVQALNLILL--TSSELSELRDLLKKSLVNPAG----KDLFVSLYA------------ 289 (504)
Q Consensus 240 ~~~D-----------l-~F~~~mVq~Ln~iLL--Ts~El~~lR~~L~~~l~~~~~----~~lF~~L~~------------ 289 (504)
...+ . +..+-+|..+..+|+ ...+-.-|=.-+|++...+.+ +.+...|.+
T Consensus 241 ~~~lp~Lav~Ltld~~~~~~~dlv~fls~lLLg~~~~~r~w~~~fi~~~qk~~~~~~~~~~lr~~l~~~l~~~~~~~~~~ 320 (1049)
T PF14750_consen 241 LCKLPGLAVRLTLDHLHDQDSDLVAFLSGLLLGSDQNIRSWFAQFIRNGQKRKRESPALKLLRRELLKELSSLLPSSGNS 320 (1049)
T ss_pred HccChHHHHHHHhhcccccchhHHHHHHHHHhcCCchhhHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHhccccccc
Confidence 2111 0 233455666677777 222222222222221111111 111111111
Q ss_pred ----HhccChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHHHHHHHhhch
Q 010666 290 ----SWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETP 341 (504)
Q Consensus 290 ----sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVqLlESP 341 (504)
.|+-..-| -=..|--++.++++-.|.+ |++.++||++|.
T Consensus 321 ~l~e~~~~~~~a----------llrlyCaL~g~~g~k~~~e---E~~~lL~lit~~ 363 (1049)
T PF14750_consen 321 PLKEEHIVQASA----------LLRLYCALRGIAGLKFTPE---ESEALLQLITSS 363 (1049)
T ss_pred CCCcchHHHHHH----------HHHHHHHHHhhhcCCcCHH---HHHHHHHHHccC
Confidence 22222221 1234556677789999998 899999999986
No 120
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=81.37 E-value=7.1 Score=39.58 Aligned_cols=143 Identities=16% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCC--CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~--~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~ 78 (504)
||.||++.||..|-.+|+.+=-..++.. ....+.+.+.++. +.-|.+.|+.+++-|..+ .+.. +--..+...+.
T Consensus 62 lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nL-tv~~-~~~~~l~~~i~ 137 (254)
T PF04826_consen 62 LLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVS--SPLNSEVQLAGLRLLTNL-TVTN-DYHHMLANYIP 137 (254)
T ss_pred HcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHcc-CCCc-chhhhHHhhHH
Confidence 6889999999988778875522221111 1122333333322 123678888888877776 3333 11222344555
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCCh--HhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchh
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDV--GPILSIATRQLS-SEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~--~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
.++++|+.++..+|..+.++...|-. ++...-++ ..++..+..-|. +++.+.-+.+|.|..-+-+-...
T Consensus 138 ~ll~LL~~G~~~~k~~vLk~L~nLS~---np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 138 DLLSLLSSGSEKTKVQVLKVLVNLSE---NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhcc---CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 66788999998888777776543321 11000000 123445555554 44677788999999888554433
No 121
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=1.4e+02 Score=36.30 Aligned_cols=330 Identities=18% Similarity=0.163 Sum_probs=156.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC-------CCc--------------------hHHHHHHHHHHcCCC-----ChH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSP-------SVD--------------------YGRMAEILVQRAASP-----DEF 49 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~-------~vD--------------------~~~iI~ILv~~l~s~-----e~~ 49 (504)
+=|+.-+||.+|-+++.|-+-.-.+.| .+| |+.....+.+|+-.. |++
T Consensus 480 lFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 480 LFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred hcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHH
Confidence 348999999999999999887755432 122 344445555555433 577
Q ss_pred HHHHHHHHHHHHHhcCCcccc-ccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC--C-CCC------hHhHH
Q 010666 50 TRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA--D-GFD------VGPIL 119 (504)
Q Consensus 50 iRltaL~WI~efl~i~~~~ll-pylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~--~-~~d------~~~iv 119 (504)
+|..+=.=++.+....|..+. -++|.+|+-.+ ..+...|.-+..+.+++..-...-. . +++ ...++
T Consensus 560 irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii 635 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYLADYVLPPLLDSTL----SKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSII 635 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc----CCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhc
Confidence 776666666666666666666 34666655443 3444444444333333322221111 0 000 11122
Q ss_pred HHH-HHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhc-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hchhhH
Q 010666 120 SIA-TRQLS-SEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHF 192 (504)
Q Consensus 120 ~vL-~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~-~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is----~~~~~F 192 (504)
..+ ..++. ...+.-|.+.+.-+..+-...+.-..++ .++.--.+.+++++++ .+...+..-+++++ .+++++
T Consensus 636 ~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~ 714 (1133)
T KOG1943|consen 636 PPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGE 714 (1133)
T ss_pred cHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchh
Confidence 211 12221 1124456666666666655554322222 2233444556666666 44444445555555 344444
Q ss_pred HH-HHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhcc------ccCh--HHHHHHHHHHHHHhcCch-
Q 010666 193 RQ-LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG------EADL--DFACTMVQALNLILLTSS- 262 (504)
Q Consensus 193 ~~-fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~------~~Dl--~F~~~mVq~Ln~iLLTs~- 262 (504)
.. .+...+....+...--+.|| +-=-|..++.|-|-..+-+++.+ .+|. +=-+.-|-.|+-+--|..
T Consensus 715 ~~~li~~~ls~~~~~~~~~~r~g---~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~ 791 (1133)
T KOG1943|consen 715 EAPLITRYLSRLTKCSEERIRRG---LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTS 791 (1133)
T ss_pred hhHHHHHHHHHhcCchHHHHHHH---HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 43 55666665554433234444 33345666654443332222211 2331 111224444554444433
Q ss_pred -----hHHHHHHHHHhhcCC-----cch----------hHHHHHHHHHhc-----cChHHHHHHHHHHhh-------HHH
Q 010666 263 -----ELSELRDLLKKSLVN-----PAG----------KDLFVSLYASWC-----HSPMAIISLCLLAQT-------YHH 310 (504)
Q Consensus 263 -----El~~lR~~L~~~l~~-----~~~----------~~lF~~L~~sWc-----hn~vs~lsLcLl~q~-------Ye~ 310 (504)
-..++|+.|-+++++ ..| ..++..++.+=. -+-|--+==|++.|. ||+
T Consensus 792 ~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~ 871 (1133)
T KOG1943|consen 792 LLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLREL 871 (1133)
T ss_pred hhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 234555555554421 111 223333333211 000001111244443 567
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhh
Q 010666 311 ASAVIQSLVEEDLNVKFLVQLDKLIRLLE 339 (504)
Q Consensus 311 A~~li~~~~~~eitv~~L~qiD~LVqLlE 339 (504)
|+..++.+--.++++.-.=.+++|-..+-
T Consensus 872 a~~~~~qi~~~~~~i~~~~~~~~L~ei~~ 900 (1133)
T KOG1943|consen 872 AASALNQIVVHSPSIPHFRHIEKLEEIFP 900 (1133)
T ss_pred HHHHHhceeecCCCCCcchHHHHHHhhcC
Confidence 77777766555666666666666665554
No 122
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.92 E-value=97 Score=36.17 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=118.9
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhcCCccc-----cccHHHHHHHHcccccCCchHHHHHHHH----HHHHHHHhhc
Q 010666 37 EILVQRAASPDEFTRLTAITWINEFVKLGGDQL-----VPYYADILGAILPCISDKEEKIRVVARE----TNEELRAIKA 107 (504)
Q Consensus 37 ~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~l-----lpylp~iL~~lLp~Lsd~~~eIR~~A~~----~N~~Ll~li~ 107 (504)
|+|-.-++..+...|..|..-.-++.-+-+.+. =.-+-.=..-+...|+|+.|.||-.|.. +-..+-.+|+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 566667788999999999887777777655444 2223333445677889999999988754 3445555654
Q ss_pred CCCCCCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 108 DPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.. + +-+++.-++.-+ +++...+|.++.+=|.++...- .-.+.++.++|+|=.+|-|.++.|.-...+++..|-
T Consensus 257 ~~---i-~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PT---I-LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HH---H-HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 31 1 223333233333 4666789999999888876532 112344556777777788999999999999999995
Q ss_pred h--chhhHH-HHHHHHHhhccccchhhhhhHHHHHHHHhhcCC-hHHHHHHHHHhh
Q 010666 187 K--DLQHFR-QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD-AERVYRELSTIL 238 (504)
Q Consensus 187 ~--~~~~F~-~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~-aE~Iy~~La~iL 238 (504)
. .-++|+ =-|+.++.-+.+|..---+|-.-.|-+-|.=.+ +|.+|+.=...|
T Consensus 331 ~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tl 386 (1005)
T KOG1949|consen 331 AVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTL 386 (1005)
T ss_pred hhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Confidence 2 112222 125667777777743222222223333333222 355555444444
No 123
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.60 E-value=1.3e+02 Score=35.60 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHHHHh---cCCccccccHHHHHHHHcccccCC-chHHHHHHHHHHHHHHHhhcCCCCCC-ChHhHHHH
Q 010666 47 DEFTRLTAITWINEFVK---LGGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGF-DVGPILSI 121 (504)
Q Consensus 47 e~~iRltaL~WI~efl~---i~~~~llpylp~iL~~lLp~Lsd~-~~eIR~~A~~~N~~Ll~li~~~~~~~-d~~~iv~v 121 (504)
|-.+|+++..=++..++ ..++.++||+|.+...+++.+--- .-+-|-....+.+.+..- .++.+ +|...+-.
T Consensus 540 D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r---~~e~I~P~~~~ivq 616 (978)
T KOG1993|consen 540 DLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER---VSEHIAPYASTIVQ 616 (978)
T ss_pred cceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHhhhHHHHHHHH
Confidence 44578888887777664 578999999999999999887542 233444344444444333 34444 34332222
Q ss_pred HHHhc-C--CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCC-HH---HHHHHHHHHHHHhhchhhHHH
Q 010666 122 ATRQL-S--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DE---VVLLVLEVHACIAKDLQHFRQ 194 (504)
Q Consensus 122 L~~~L-~--s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~s-de---Vv~~~L~LLa~Is~~~~~F~~ 194 (504)
....+ . .++..-|.|.|.=++.|.+--+.+-..+.+-+.|++=.+ .|++ ++ ..+-.+++|...-+ |+.+
T Consensus 617 ~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~-~D~~sP~hv~L~EDgmeLW~~~L~---n~~~ 692 (978)
T KOG1993|consen 617 YLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS-TDPSSPEHVYLLEDGMELWLTTLM---NSQK 692 (978)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh-cCCCCCceeehhhhHHHHHHHHHh---cccc
Confidence 22233 1 334456999999999999999888888888899987544 3443 32 23446777776643 3455
Q ss_pred HHHHHHhhccccchhhh
Q 010666 195 LVVFLVHNFRVDNSLLE 211 (504)
Q Consensus 195 fm~~LL~lF~~dr~LLe 211 (504)
+-..++.+|+.--..+|
T Consensus 693 l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 693 LTPELLLLFPHLLYIIE 709 (978)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 55555555554434333
No 124
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.58 E-value=11 Score=45.51 Aligned_cols=150 Identities=14% Similarity=0.141 Sum_probs=107.1
Q ss_pred chHHHHHHHHHHcCCCChHHHHHH-----HHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHH-
Q 010666 31 DYGRMAEILVQRAASPDEFTRLTA-----ITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA- 104 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e~~iRlta-----L~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~- 104 (504)
..+.++..++..+++.+++-+-++ =..+.++-.+.|.-+++++..+++ .+..+.-.+|.+-.++..++-.
T Consensus 267 ~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~----lld~es~~lRnavlei~~n~V~~ 342 (1251)
T KOG0414|consen 267 GSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVD----LLDSESYTLRNAVLEICANLVAS 342 (1251)
T ss_pred ccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHH
Confidence 348888888888888876553222 247778888888888888777776 4444556778777776554432
Q ss_pred hhcCC---CCCCChH-hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHH
Q 010666 105 IKADP---ADGFDVG-PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 180 (504)
Q Consensus 105 li~~~---~~~~d~~-~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~ 180 (504)
.+.+. ....+.. ..+++|.+++.+-+..+|..||+=...|.+.. .+-......+.......|-|.|--|...|++
T Consensus 343 ~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~-s~p~~~~~eV~~la~grl~DkSslVRk~Ai~ 421 (1251)
T KOG0414|consen 343 ELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQH-SIPLGSRTEVLELAIGRLEDKSSLVRKNAIQ 421 (1251)
T ss_pred HhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHcc-CCCccHHHHHHHHHhcccccccHHHHHHHHH
Confidence 22221 1123344 48899999999999999999997666665544 3344566678888889999999999999999
Q ss_pred HHHHH
Q 010666 181 VHACI 185 (504)
Q Consensus 181 LLa~I 185 (504)
+++..
T Consensus 422 Ll~~~ 426 (1251)
T KOG0414|consen 422 LLSSL 426 (1251)
T ss_pred HHHHH
Confidence 98874
No 125
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.93 E-value=21 Score=41.33 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHcCCC-C-hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 30 VDYGRMAEILVQRAASP-D-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~-e-~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
.+|-+.+++++.-+... . +-+=.++...+..|=+.++++ .++..++..+|+-...++..||--++.+...++..+.
T Consensus 40 eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~--DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ 117 (892)
T KOG2025|consen 40 EEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEE--DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA 117 (892)
T ss_pred HHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchh--hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc
Confidence 34555555333333221 1 223334444444444444331 1566777888888888999999888888777777554
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010666 108 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 182 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LL 182 (504)
+-++.+ |..+.+.+..++.+-...+|+.|+-=|.-|.. .|.+=---.-++|-.++.. |||+||...+|.-+
T Consensus 118 eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~liqn--DpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 118 EIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLIQN--DPSDEVRRAALSNI 188 (892)
T ss_pred ccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhc--CCcHHHHHHHHHhh
Confidence 422222 66777788899999999999999988887774 2222122234567777775 99999999886543
No 126
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=79.34 E-value=1.1e+02 Score=35.02 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCC----------------------
Q 010666 32 YGRMAEILVQRA--ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK---------------------- 87 (504)
Q Consensus 32 ~~~iI~ILv~~l--~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~---------------------- 87 (504)
|+.|++-|+.-. .-.|...|..+.+=+.+++.++++.+.+-+..+.+.++.-|...
T Consensus 496 Y~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN 575 (858)
T COG5215 496 YLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSN 575 (858)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 777888877633 23445679999999999999999988888888777776654421
Q ss_pred ------------chHHHHHHHHHHHHHHHhhcCCCCCC----------------------ChHhHHHHHHHhcCCCCHHH
Q 010666 88 ------------EEKIRVVARETNEELRAIKADPADGF----------------------DVGPILSIATRQLSSEWEAT 133 (504)
Q Consensus 88 ------------~~eIR~~A~~~N~~Ll~li~~~~~~~----------------------d~~~iv~vL~~~L~s~~e~T 133 (504)
.++|+.++...-+.|++.+......+ ....++.-|+.-+...+...
T Consensus 576 ~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v 655 (858)
T COG5215 576 YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFV 655 (858)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHH
Confidence 12334444444455555554432211 12334444555565566667
Q ss_pred HHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhh-----chhhHHHHHHHHHhhcccc
Q 010666 134 RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 134 RlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~s--deVv~~~L~LLa~Is~-----~~~~F~~fm~~LL~lF~~d 206 (504)
-..|...+-.|-+....++..|.+.+...|..+||.+. -++---.|.+...|+. -+.|++.+|.-+.+-=..|
T Consensus 656 ~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~ 735 (858)
T COG5215 656 LNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELD 735 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Confidence 78888999999999999999999999999999999875 3566667788888883 2566666666553333333
Q ss_pred c-----hhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccc--cChHHHHHHHHHHHHH
Q 010666 207 N-----SLLEKRGALIIRRLCVLLDAERVYRELSTILEGE--ADLDFACTMVQALNLI 257 (504)
Q Consensus 207 r-----~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~--~Dl~F~~~mVq~Ln~i 257 (504)
+ ..++-|-+...--+|. |-.+.+-+... .=+.++-.|.+.+|.|
T Consensus 736 p~~~~~~~~dy~~~~~~~v~~a-------yVgI~~~~~nr~~~v~Pyv~sif~~i~~i 786 (858)
T COG5215 736 PHSDEVYVDDYRKNAVQLVNCA-------YVGIGDSSKNRVRSVLPYVISIFHKIGMI 786 (858)
T ss_pred CCCCceeHHHHHHHHHHHHHHH-------HHHhhhhhhhhHHHhhhHHHHHHHHHHHh
Confidence 2 2334454554444454 33333333321 1244555666776655
No 127
>PF05536 Neurochondrin: Neurochondrin
Probab=78.43 E-value=1.2e+02 Score=34.10 Aligned_cols=239 Identities=19% Similarity=0.157 Sum_probs=136.3
Q ss_pred CCchHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHhcCCc--cccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHh
Q 010666 29 SVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGD--QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~-~iRltaL~WI~efl~i~~~--~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l 105 (504)
+-++-.-||+|++-+..... .+---++.=+..+..-+.. .++. .+-+..+...+.+ .+...+.|..+...++..
T Consensus 93 ~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 93 SPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred CHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHh
Confidence 34566667777777765555 5555666666666644332 2222 2333333333333 444577777777777665
Q ss_pred hcCC---CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh--hhh----chhH---HHHHHHHhcCCCCHH
Q 010666 106 KADP---ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE--VLH----FLND---IFDTLLKALSDPSDE 173 (504)
Q Consensus 106 i~~~---~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~--~l~----~~~~---lfp~LLksLSD~sde 173 (504)
.... .....+..++..+...+...+...|..++.-|..|+...|.. -.. ..+. -+-.+|.+ ...++
T Consensus 170 ~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s--r~~~~ 247 (543)
T PF05536_consen 170 LGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS--RLTPS 247 (543)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc--CCCHH
Confidence 4421 123446788889999999889999999999999999988532 111 2222 33344433 55677
Q ss_pred HHHHHHHHHHHHhh---------chh-hHHHHHHHHHhhcccc-c--------------------hhhhhh--HHHHHHH
Q 010666 174 VVLLVLEVHACIAK---------DLQ-HFRQLVVFLVHNFRVD-N--------------------SLLEKR--GALIIRR 220 (504)
Q Consensus 174 Vv~~~L~LLa~Is~---------~~~-~F~~fm~~LL~lF~~d-r--------------------~LLe~R--g~lIIRq 220 (504)
-+..++.+.+.+.+ ++. .=++|+--++++-.-| | .+-.+- -+.+|..
T Consensus 248 ~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~ 327 (543)
T PF05536_consen 248 QRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGY 327 (543)
T ss_pred HHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 77888888777651 222 1112222222222211 1 111111 1227778
Q ss_pred HhhcCC-------h---HHHHHHHHHhhcc------------ccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010666 221 LCVLLD-------A---ERVYRELSTILEG------------EADLDFACTMVQALNLILLTSSELSELRDLLKKS 274 (504)
Q Consensus 221 LC~~L~-------a---E~Iy~~La~iL~~------------~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~ 274 (504)
+|.... + .++++.+.+...- ..|-.|+=.+|..|..-| ++|-..+|++....
T Consensus 328 l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WL--aEe~~~lr~~v~~L 401 (543)
T PF05536_consen 328 LVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWL--AEETSALRKEVYGL 401 (543)
T ss_pred HHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH--HhChHHHHHHHHHH
Confidence 887443 3 3667666665431 134447777899998776 55556699988763
No 128
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.21 E-value=27 Score=37.37 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=73.3
Q ss_pred HHHHcc-cccCCchHHHHHHHHHHHHHHHhhcCC----CCCCChHhHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhh--
Q 010666 77 LGAILP-CISDKEEKIRVVARETNEELRAIKADP----ADGFDVGPILSIATRQL--SSEWEATRIEALHWISTLLNR-- 147 (504)
Q Consensus 77 L~~lLp-~Lsd~~~eIR~~A~~~N~~Ll~li~~~----~~~~d~~~iv~vL~~~L--~s~~e~TRlaaL~WL~~L~~k-- 147 (504)
..-+.. .|+|+ ++||.+|-++...+..-.... .-++|+ -++.-| .+.++.-|..||+-+..+.+.
T Consensus 27 ~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~-----~ii~SL~~~~~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 27 GERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDI-----FIIRSLDRDNKNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred HHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCch-----hhHhhhcccCCChHHHHHHHHHHHHHHHhcC
Confidence 333443 44555 999999999876544221100 011221 112222 245677899999999998888
Q ss_pred chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hch------hhHHHHHHHHHh
Q 010666 148 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDL------QHFRQLVVFLVH 201 (504)
Q Consensus 148 ~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~------~~F~~fm~~LL~ 201 (504)
.|+++ -.++.-++.....+++|.....+++.+++++ .|. +-|+-.++.+++
T Consensus 101 ~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 101 GPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID 158 (371)
T ss_pred CcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh
Confidence 44443 4567778888888899999999999999998 222 334555555554
No 129
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.98 E-value=15 Score=42.41 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=93.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hch------
Q 010666 117 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDL------ 189 (504)
Q Consensus 117 ~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~------ 189 (504)
++.+-+...+.++..-+|..|.--+.-+.-+||+.+-+ -||-|-..|-|+++-|+..|..|+.+++ .|.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 44455666778999999999999999999999998875 7888899999999999999999999999 343
Q ss_pred --hhHHH--------HHHHHHhhccccchhhhhh-HHHHHHHHhhcCCh----HHHHHHHHHhhcc----c--cChHHHH
Q 010666 190 --QHFRQ--------LVVFLVHNFRVDNSLLEKR-GALIIRRLCVLLDA----ERVYRELSTILEG----E--ADLDFAC 248 (504)
Q Consensus 190 --~~F~~--------fm~~LL~lF~~dr~LLe~R-g~lIIRqLC~~L~a----E~Iy~~La~iL~~----~--~Dl~F~~ 248 (504)
.+|+- ++..++++|..=.+ +|-| |.-.|--||.+++. --+|..+-.++.. . ++-.-++
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtp-lEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTP-LEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccc-cCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 23332 34577888875532 2322 34455566655544 2344444443332 2 4556666
Q ss_pred HHHHHHHHHh
Q 010666 249 TMVQALNLIL 258 (504)
Q Consensus 249 ~mVq~Ln~iL 258 (504)
-.||-|-..+
T Consensus 299 LCvqKLr~fi 308 (877)
T KOG1059|consen 299 LCVQKLRIFI 308 (877)
T ss_pred HHHHHHhhhh
Confidence 6777765443
No 130
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=77.93 E-value=13 Score=42.81 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=53.1
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh-HHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALS-DPSDEVVLLVLEVHACI 185 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~-~lfp~LLksLS-D~sdeVv~~~L~LLa~I 185 (504)
....+.|..+|.. ..+|+.+|.-|.++..+.|.-+-...+ .+|+.||+||. |.+..|+..++-+|..+
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3455566666654 469999999999999999987766555 79999999987 66778888888776664
No 131
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.86 E-value=18 Score=34.04 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=77.5
Q ss_pred ccc--HHHHHHHHcccccCC-chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHH-hcCCCCHHHHHHHHHHHHH--
Q 010666 70 VPY--YADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATR-QLSSEWEATRIEALHWIST-- 143 (504)
Q Consensus 70 lpy--lp~iL~~lLp~Lsd~-~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~-~L~s~~e~TRlaaL~WL~~-- 143 (504)
-|| +|.+++.++..|..+ ..++|..|-++.+-+=.+=. .-+..+...... .-.+++....-..+-|...
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-----~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDP-----YKHKSIQKSLDSKSSENSNDESTDISLPMMGISP 77 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-----HHHhcccccCCccccccccccchhhHHhhccCCC
Confidence 455 799999999999876 48899999998764211100 000000000000 0011112222222222111
Q ss_pred -HHhhchhhhhhchhHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhccccchhhhhhHHH
Q 010666 144 -LLNRHRTEVLHFLNDIFDTLLKALSDPS-----DEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNSLLEKRGAL 216 (504)
Q Consensus 144 -L~~k~P~~~l~~~~~lfp~LLksLSD~s-----deVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~l 216 (504)
.-+.+|. ..+.+|++-|.|++ ..|+.-.+..+...+ ..-.||.++|-.++...++-.. ..| ++
T Consensus 78 ~~ee~y~~-------vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~--~~~-e~ 147 (160)
T PF11865_consen 78 SSEEYYPT-------VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD--SLR-EF 147 (160)
T ss_pred chHHHHHH-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH--HHH-HH
Confidence 1122222 24557777777776 456666666665544 3468899999999888874433 334 66
Q ss_pred HHHHHhhcC
Q 010666 217 IIRRLCVLL 225 (504)
Q Consensus 217 IIRqLC~~L 225 (504)
+..|||.+.
T Consensus 148 ~~~qL~~lv 156 (160)
T PF11865_consen 148 YFQQLADLV 156 (160)
T ss_pred HHHHHHHHH
Confidence 888888653
No 132
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.64 E-value=71 Score=37.17 Aligned_cols=200 Identities=15% Similarity=0.200 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCC--chHHHHHHH--------------HHHcCCCChHH----HHHHHHHHHHHH
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSV--DYGRMAEIL--------------VQRAASPDEFT----RLTAITWINEFV 62 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~v--D~~~iI~IL--------------v~~l~s~e~~i----RltaL~WI~efl 62 (504)
+|+..-||+.|.-||=++.|.-+..... =..+|+.+| ++.+-..+|+- =.-+++=|..++
T Consensus 158 ~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv 237 (938)
T KOG1077|consen 158 GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIV 237 (938)
T ss_pred CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHH
Confidence 5666778888888888888876643222 123333332 12222222222 224555666666
Q ss_pred hcCCcccccc---------HH-HHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCC--------------------
Q 010666 63 KLGGDQLVPY---------YA-DILGAILPCISDKEEKIRVVARETNEELRAIKADPADG-------------------- 112 (504)
Q Consensus 63 ~i~~~~llpy---------lp-~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~-------------------- 112 (504)
...+.++..| +. +++..+.-+=.-.++..|..-.+|.+.++.-.+++...
T Consensus 238 ~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 238 VVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred hhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 6665554333 11 22222222211233446666666666666555532111
Q ss_pred --CC-----hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh-hhhhchhHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 010666 113 --FD-----VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALS-DPSDEVVLLVLEVHA 183 (504)
Q Consensus 113 --~d-----~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~-~~l~~~~~lfp~LLksLS-D~sdeVv~~~L~LLa 183 (504)
.| +..-++.|.+.+.+...-.|.-||+=+-.|..--+. +...+. ...++.+|. +.+-.|+.+++++|-
T Consensus 318 ~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY 394 (938)
T KOG1077|consen 318 IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLY 394 (938)
T ss_pred HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHH
Confidence 11 345566777777777777898898887777655331 222222 223444455 788899999999999
Q ss_pred HHhhchhhHHHHHHHHHhhcccc
Q 010666 184 CIAKDLQHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 184 ~Is~~~~~F~~fm~~LL~lF~~d 206 (504)
..| +.++=+..+..||++..+-
T Consensus 395 ~mc-D~~Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 395 AMC-DVSNAKQIVAELLQYLETA 416 (938)
T ss_pred HHh-chhhHHHHHHHHHHHHhhc
Confidence 999 3556677777888777653
No 133
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=77.47 E-value=31 Score=38.19 Aligned_cols=119 Identities=7% Similarity=0.169 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHH
Q 010666 16 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 95 (504)
Q Consensus 16 lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A 95 (504)
+++.||+ ++|.+.|+++|+.-+...++..+.-.+.|+.+ . .+++.+++.+= ...+.++...|
T Consensus 22 ~v~~llk------HI~~~~ImDlLLklIs~d~~~~~~~ilewL~~------q---~LI~~Li~~L~---p~~~~~~q~na 83 (475)
T PF04499_consen 22 FVDNLLK------HIDTPAIMDLLLKLISTDKPESPTGILEWLAE------Q---NLIPRLIDLLS---PSYSSDVQSNA 83 (475)
T ss_pred HHHHHHH------hcCCcHHHHHHHHHHccCcccchHHHHHHHHH------h---CHHHHHHHHhC---CCCCHHHHHHH
Confidence 5555655 77888999999999998888999999999988 2 23344444442 23346778888
Q ss_pred HHHHHHHHHhhcCCCCC-------------CChHhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhchhhh
Q 010666 96 RETNEELRAIKADPADG-------------FDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEV 152 (504)
Q Consensus 96 ~~~N~~Ll~li~~~~~~-------------~d~~~iv~vL~~~L~s-~~e~TRlaaL~WL~~L~~k~P~~~ 152 (504)
..+...+.+.-.+.... +-=.++|+.|..+..+ .....-+.++.=++.|++|.+.+-
T Consensus 84 a~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknnsdy 154 (475)
T PF04499_consen 84 ADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNSDY 154 (475)
T ss_pred HHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccccc
Confidence 88877777665532211 2224666666666654 445566777788888887775443
No 134
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=77.40 E-value=28 Score=39.34 Aligned_cols=92 Identities=27% Similarity=0.402 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCh--------------HHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchh
Q 010666 216 LIIRRLCVLLDA--------------ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGK 281 (504)
Q Consensus 216 lIIRqLC~~L~a--------------E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~ 281 (504)
-+++||....+. ..+|+.+++.| .+++|-.|+.+-...|++ +|
T Consensus 129 n~v~QLaaly~~~~~~~~~~~~~v~l~~vf~~lg~lL-----------------~vlvtlDeIi~~n~~L~~------~w 185 (567)
T PF14745_consen 129 NLVQQLAALYSSQKAPKPIDFKGVHLQTVFDHLGELL-----------------RVLVTLDEIIEQNPSLRD------HW 185 (567)
T ss_pred HHHHHHHHHHcccccCCccccCCccHHHHHHHHHHHH-----------------HHHHHHHHHHHhhHHHHH------HH
Confidence 377888777665 35666666666 456666777777777765 79
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHHHHHH-----HhhchhhHHHHHHhcCC
Q 010666 282 DLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR-----LLETPIFAYLRLQLLEP 353 (504)
Q Consensus 282 ~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVq-----LlESPiF~~LRLqLLep 353 (504)
..|...-+++.||| +..+++.+.|-++|+++. +++..+|...==|+.+.
T Consensus 186 ~~ykr~l~~v~~np-----------------------~~f~~~~~~l~~le~ll~~le~~ll~g~iF~~~~eq~fd~ 239 (567)
T PF14745_consen 186 SLYKRMLKSVRHNP-----------------------SKFGVTEEKLRQLEKLLADLEGQLLDGNIFQRCLEQLFDD 239 (567)
T ss_pred HHHHHHHHHHhcCh-----------------------hhcCCCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccc
Confidence 99999999999999 344677888888888885 44456666655566663
No 135
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=76.83 E-value=81 Score=33.75 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=118.4
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc-----ccccHHHHHHH
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-----LVPYYADILGA 79 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~-----llpylp~iL~~ 79 (504)
+.+|--..|-+||.++++.-... + =.+...+.|..-+...+...+..+.+-|-.+++-++.. ++---.+|+.-
T Consensus 55 nhrekttlcVscLERLfkakega-h-lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEGA-H-LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccchhhhHHHHHHHHHhhccch-h-hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 33444555888999988754311 1 13566777777777778888888888888888877732 22234688999
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcC-----CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~-----~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
++.|+..++.+|-++|.+....+...-.. +++..|--...|. ...-+.-.|+.++.-|+.+....|...-.
T Consensus 133 ildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnl----aakcndiaRvRVleLIieifSiSpesane 208 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNL----AAKCNDIARVRVLELIIEIFSISPESANE 208 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHH----HhhhhhHHHHHHHHHHHHHHhcCHHHHhH
Confidence 99999999999999999887765432110 1222222222221 12335668999999999999999987653
Q ss_pred -chhHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 010666 155 -FLNDIFDTLLKALSD-PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 155 -~~~~lfp~LLksLSD-~sdeVv~~~L~LLa~Is 186 (504)
--++++..|+.-|.- ++.-|+...+++..++.
T Consensus 209 ckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 209 CKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred hhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 345788888888887 45567777777766655
No 136
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.74 E-value=91 Score=31.72 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=96.0
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHhcCCcccc-c-cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC-CCCCh
Q 010666 39 LVQRAASPDEFTRLTAITWINEFVKLGGDQLV-P-YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA-DGFDV 115 (504)
Q Consensus 39 Lv~~l~s~e~~iRltaL~WI~efl~i~~~~ll-p-ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~-~~~d~ 115 (504)
|-.++.+.|+.+|.-++.-+.+.+.--+.+.+ . -..-+++-....|.|.. .+..+ ...+..++.-.. ..-..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~----l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA----LKGLLALVKMKNFSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH----HHHHHHHHhCcCCChhhH
Confidence 44567788999999999999988876554333 2 34445555555665443 34444 333333332211 11224
Q ss_pred HhHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 010666 116 GPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA 186 (504)
Q Consensus 116 ~~iv~vL~~~L~--s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~-sdeVv~~~L~LLa~Is 186 (504)
..+++.+.++.. +....+|..+++.+..|.++++..+-.+-+..+..++.....+ +++-.....+++..+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 566666665444 4456689999999999999999988777778888888877765 6788888888888876
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=75.62 E-value=78 Score=37.57 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhcCC
Q 010666 31 DYGRMAEILVQRAASPD--EFTRLTAITWINEFVKLGG 66 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl~i~~ 66 (504)
+..+|++.|..||..-+ ......+..||..++..-+
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 45789999999987543 3345567788888776544
No 138
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.60 E-value=15 Score=44.83 Aligned_cols=174 Identities=19% Similarity=0.160 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCC
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK 87 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~ 87 (504)
-||.+|.+.|+-.++..-.+ =+.+.++|+..-+..++-++|.--+.=++.++.+-.+.+..+++.+++.+...|.|+
T Consensus 144 pVre~caq~L~~~l~~~~~s---~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDES---LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhH---hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 58888888898888865322 145678888888887777777777777888888777777789999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh--hh------hchhHH
Q 010666 88 EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE--VL------HFLNDI 159 (504)
Q Consensus 88 ~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~--~l------~~~~~l 159 (504)
+.++|.+|...+........+ -....+..+++.+..++..-.. -.++-.=+.++..+.+.. ++ +...++
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~-l~~~~i~~lv~~l~~~l~~ldd--l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~L 297 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVK-LMVQKIAKLVHTLWSFLLELDD--LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGL 297 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHh-hhHhHHHHHHHHHHHHHHHhhh--cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhcc
Confidence 999999999988665554422 1223356666666655532111 111111222333333221 11 223578
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 160 FDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 160 fp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
-|-+++.+++.-..|...+++.+....+
T Consensus 298 vp~~~p~l~~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 298 VPRLWPFLRHTISSVRRAALETLAMLLE 325 (1549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999998888888888888888773
No 139
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.48 E-value=35 Score=36.08 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=90.6
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCC-C--CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADP-A--DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~-~--~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
+.++.-++..+..+..||-.-|-.+-.+++.-=+.. + -.-+|+........-+.+++=.||.-+|+-|..|+...+.
T Consensus 163 ~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 163 SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 344444555555666666555555554444210000 0 0256889999889899999999999999999998855543
Q ss_pred --hhhhchhH--HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------------chhhHHHHHHHHHhhcc----ccch
Q 010666 151 --EVLHFLND--IFDTLLKALSDPSDEVVLLVLEVHACIAK--------------DLQHFRQLVVFLVHNFR----VDNS 208 (504)
Q Consensus 151 --~~l~~~~~--lfp~LLksLSD~sdeVv~~~L~LLa~Is~--------------~~~~F~~fm~~LL~lF~----~dr~ 208 (504)
-|..|+++ -+-.++.-|+|+|..|.-.|..+..-... |.+-+-.| +.-|. .|..
T Consensus 243 ~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~f----l~~f~~~~~~D~q 318 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRF----LKDFHTDRTDDEQ 318 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHH----HHTTTTT--S-CH
T ss_pred HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH----HHhCCCCCCcccc
Confidence 34556553 57788888999999999988888766442 22222222 33333 3567
Q ss_pred hhhhhHHHHHHHHhh
Q 010666 209 LLEKRGALIIRRLCV 223 (504)
Q Consensus 209 LLe~Rg~lIIRqLC~ 223 (504)
+.++| .++|+++-.
T Consensus 319 f~~EK-~~li~~i~~ 332 (335)
T PF08569_consen 319 FEDEK-AYLIKQIES 332 (335)
T ss_dssp HHHHH-HHHHHHHHT
T ss_pred HHHHH-HHHHHHHHh
Confidence 77888 788888754
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=1.7e+02 Score=34.55 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=47.3
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
=.|+++..+.+--.|.+.-..|-.. ..-.+.+.+.+|...|.+.....|-+|.+=|..+-.++|..+-
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~-----~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNT-----NSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhcccc-----CHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3456666555443333333222211 1233566899999999999999999999999999999998875
No 141
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.87 E-value=1.3e+02 Score=32.09 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhchh-hhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchh-----hH-HHHHHHHH
Q 010666 128 SEWEATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-----HF-RQLVVFLV 200 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L~~k~P~-~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~-----~F-~~fm~~LL 200 (504)
+...+.|..||+=|.++.+-.-+ ..+--+.++-|. +..|.+.+.+|..+|+.|++.++.|.. .+ ..|...|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~l-l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPL-LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHH-HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 55677899999888887765532 223333444444 459999999999999999999995431 11 13677778
Q ss_pred hhccccchh------hhhhHHHHHH------HHhhcCChHHHHHHHHHhhccc-cChHHHHHHHHHHHHHhc
Q 010666 201 HNFRVDNSL------LEKRGALIIR------RLCVLLDAERVYRELSTILEGE-ADLDFACTMVQALNLILL 259 (504)
Q Consensus 201 ~lF~~dr~L------Le~Rg~lIIR------qLC~~L~aE~Iy~~La~iL~~~-~Dl~F~~~mVq~Ln~iLL 259 (504)
..|.++... |-.++++ || .....+++ |..|.++++.- .+..|-.+.+-.+..++-
T Consensus 173 ~~ls~~~~~~~r~kaL~AissL-IRn~~~g~~~fl~~~G---~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSL-IRNNKPGQDEFLKLNG---YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHH-HhcCcHHHHHHHhcCC---HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 888776432 2223222 22 22334455 88888998774 788887666666655543
No 142
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.59 E-value=40 Score=41.63 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=63.0
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
-+|+.-|...|.++++++|+.|..=+-++.......+.+-.+.++.+-|..++|-+++|+...++...++
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~ 327 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQC 327 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHH
Confidence 4566678888899999999999999999999998888888999999999999999999999999887764
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=73.06 E-value=1.2e+02 Score=31.48 Aligned_cols=98 Identities=22% Similarity=0.162 Sum_probs=65.4
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-------
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTLLNR--HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA------- 186 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k--~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is------- 186 (504)
..-+.-....+.+.+..+|.++|.=+..++.. .|+.+......++..+++++.-...+-...++.+++-++
T Consensus 42 e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 33344445555677789999999887777644 344555667788999999998766555556766666655
Q ss_pred hchhhHHHHHHHHHhhccccchhhhhh
Q 010666 187 KDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 187 ~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
..+..|+.+.-.|.........-...|
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R 148 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKAR 148 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHH
Confidence 235678887777777666554433444
No 144
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=72.68 E-value=2.4 Score=39.64 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc--CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC
Q 010666 50 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 127 (504)
Q Consensus 50 iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls--d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~ 127 (504)
.|.-.++|+++|++..|... +-++|..+...-. ..+.++...+.+|-..+|.--..-...++....++.++..+.
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~---L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~ 168 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEA---LLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD 168 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHH---HHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--
T ss_pred hccCCchHHHHhccCCCHHH---HHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC
Confidence 45566789999999877522 2233333322222 234455666666654444311110112334677899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 010666 128 SEWEATRIEALHWISTL 144 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L 144 (504)
+.+..||..|++=|..+
T Consensus 169 s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 169 SPNIKTRKLALEILAAL 185 (187)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998765543
No 145
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=72.58 E-value=25 Score=38.21 Aligned_cols=89 Identities=13% Similarity=0.008 Sum_probs=62.1
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
.+..++.+|.|+++.||..+.+.... +.-......|...+.+.+...|.+++.=+-. +.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~-----------i~~~~a~~~L~~~L~~~~p~vR~aal~al~~-r~--------- 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGW-----------LGGRQAEPWLEPLLAASEPPGRAIGLAALGA-HR--------- 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhc-----------CCchHHHHHHHHHhcCCChHHHHHHHHHHHh-hc---------
Confidence 47778888888888788777776642 3446666777777777777788777733322 11
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
..-.+.+.+.|+|++..|...++..+..+.
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 123456777788888888888888888886
No 146
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=72.07 E-value=1.6e+02 Score=32.36 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhcCCccccccH------HHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 010666 31 DYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYY------ADILGAILPCISDKEEKIRVVARETNEELR 103 (504)
Q Consensus 31 D~~~iI~ILv~~l~-s~e~~iRltaL~WI~efl~i~~~~llpyl------p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll 103 (504)
|-+..+..++.-++ ...+.+...++.-|.+++.-.|...--|. |+.....++.|..++.-|...|..+...++
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 33555666666553 34578888999999999998764222221 455677778887778889999999988876
Q ss_pred HhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010666 104 AIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 182 (504)
Q Consensus 104 ~li~~~~~~~d~~~iv~vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LL 182 (504)
..=.......+....++.+..++.+. +...+-.|+.=+..|+...+-...=.-.+.++.|.+.|+..+ ..+|++
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~-----~~~Ql~ 204 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT-----LGFQLQ 204 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc-----ccHHHH
Confidence 53222222234445667788888643 355565566667666665554432112224555555554332 234444
Q ss_pred HHHh--------hc--hhhH--HHHHHHHHhhccccchhhhhhHHH-HHHHHhhc
Q 010666 183 ACIA--------KD--LQHF--RQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVL 224 (504)
Q Consensus 183 a~Is--------~~--~~~F--~~fm~~LL~lF~~dr~LLe~Rg~l-IIRqLC~~ 224 (504)
-++. +. ...+ ..++..|++..+.-.+--=.|..+ |+|+|...
T Consensus 205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 4433 11 1111 245666666666555433345555 66666653
No 147
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=71.63 E-value=15 Score=43.14 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=34.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHhhcccc-------chhhhhh-HHHHHHHHhhcCChHHHHHHHHHhhccccChHHH
Q 010666 180 EVHACIAKDLQHFRQLVVFLVHNFRVD-------NSLLEKR-GALIIRRLCVLLDAERVYRELSTILEGEADLDFA 247 (504)
Q Consensus 180 ~LLa~Is~~~~~F~~fm~~LL~lF~~d-------r~LLe~R-g~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~ 247 (504)
.++.++......|..|+.+|+.+|++- ...+... ..-.++.+...+++|.+++..--.|....|+.++
T Consensus 266 ~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~el~~a 341 (830)
T PRK07003 266 AVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGRGELGLA 341 (830)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHHHHHHHHHHhHHHHhhcC
Confidence 444444433445566666665555421 0111110 1126677777777777776666555555555543
No 148
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=71.45 E-value=81 Score=28.68 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=64.3
Q ss_pred HHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-
Q 010666 79 AILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL- 156 (504)
Q Consensus 79 ~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~- 156 (504)
+.=+.+.+++ .-|-++|..+|. +...-..++..|..++.+.+..+.+-||.=+..+....+..+...+
T Consensus 13 ATs~~~~~~Dw~~~l~icD~i~~----------~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~ 82 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEICDLINS----------SPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA 82 (140)
T ss_dssp HT-TTSSS--HHHHHHHHHHHHT----------STTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred HhCcCCCCCCHHHHHHHHHHHHc----------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 3334444444 224455555552 2344578899999999999999999999999999999988875432
Q ss_pred hH-HHHHHHHhcCCC-CH-H--HHHHHHHHHHHHh
Q 010666 157 ND-IFDTLLKALSDP-SD-E--VVLLVLEVHACIA 186 (504)
Q Consensus 157 ~~-lfp~LLksLSD~-sd-e--Vv~~~L~LLa~Is 186 (504)
.. ++..|.+.++++ .+ . |..++++++..-+
T Consensus 83 ~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 22 333444433332 22 2 8899998888776
No 149
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=70.96 E-value=87 Score=28.86 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-hh-HHHHHHHHhc
Q 010666 90 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LN-DIFDTLLKAL 167 (504)
Q Consensus 90 eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~-~~-~lfp~LLksL 167 (504)
-+-++|..+|.. ...-...+..|...+.+.++.+.+-||.=|..+.+.++..+... .+ +++..|.+.+
T Consensus 24 ~ileicD~In~~----------~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~ 93 (142)
T cd03569 24 SILEICDMIRSK----------DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLI 93 (142)
T ss_pred HHHHHHHHHhCC----------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHH
Confidence 355566666632 23457888999999999999999999999999999998877543 22 3444555555
Q ss_pred C-CCCHHHHHHHHHHHHHHh
Q 010666 168 S-DPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 168 S-D~sdeVv~~~L~LLa~Is 186 (504)
+ ....+|..+.++++..-+
T Consensus 94 ~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 94 KTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 5 467899999999988776
No 150
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=70.20 E-value=25 Score=33.70 Aligned_cols=80 Identities=11% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
|-.-|+|.+|=.|+.-+|..-. ..+|...+.+.+..=+.. ++.||..+..-+.-+..+.|..+.+.+..+...+-..
T Consensus 38 DDGLelRK~ayE~lytlLd~~~--~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCL--SRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTC--SSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3445899999999999998332 368999999999998877 8999999999999999999999999999999998888
Q ss_pred ccC
Q 010666 84 ISD 86 (504)
Q Consensus 84 Lsd 86 (504)
|+-
T Consensus 115 L~~ 117 (169)
T PF08623_consen 115 LSK 117 (169)
T ss_dssp HH-
T ss_pred hhc
Confidence 864
No 151
>PF14961 BROMI: Broad-minded protein
Probab=69.64 E-value=2.2e+02 Score=35.30 Aligned_cols=67 Identities=28% Similarity=0.358 Sum_probs=57.7
Q ss_pred HhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhh--hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 116 GPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 116 ~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l--~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
++=++.+.+++. +.-.+.|.+|++ .|...-|.+|+ ++++.+...|...|+|+++++-+.+|++.|+.
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq---~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~ 229 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQ---ILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKM 229 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHH---HHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 666788999997 445678999975 67788889997 58999999999999999999999999999983
No 152
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.45 E-value=48 Score=37.10 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=23.3
Q ss_pred HHHHHhhcCChHHHHHHHHHhhccccChHHH
Q 010666 217 IIRRLCVLLDAERVYRELSTILEGEADLDFA 247 (504)
Q Consensus 217 IIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~ 247 (504)
.|+++...+++|.+++.+..++....|+.++
T Consensus 311 ~~~~~a~~~s~~~l~~~~~~~~~~~~~~~~~ 341 (527)
T PRK14969 311 RLLDLAKRLSPEDIQLYYQIALHGRRDLGLA 341 (527)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 5788888888888888777777766666553
No 153
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=69.21 E-value=47 Score=38.65 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHhhcccc------chh--hhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHH
Q 010666 177 LVLEVHACIAKDLQHFRQLVVFLVHNFRVD------NSL--LEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFA 247 (504)
Q Consensus 177 ~~L~LLa~Is~~~~~F~~fm~~LL~lF~~d------r~L--Le~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~ 247 (504)
.++.++.++......|..|+..|+.+++.= ... ......-.++.+...++++.+++..--.+....|+.++
T Consensus 263 ~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a 341 (709)
T PRK08691 263 ALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLA 341 (709)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Confidence 455666666655666777777776665521 000 01111235677777777777777666666655665554
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=67.91 E-value=23 Score=34.27 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhh-chhhhhhchhHHHHHH-----------H-HhcCCCCHHHHHHHHHHHHHHhhch-hhHHHHHHH
Q 010666 133 TRIEALHWISTLLNR-HRTEVLHFLNDIFDTL-----------L-KALSDPSDEVVLLVLEVHACIAKDL-QHFRQLVVF 198 (504)
Q Consensus 133 TRlaaL~WL~~L~~k-~P~~~l~~~~~lfp~L-----------L-ksLSD~sdeVv~~~L~LLa~Is~~~-~~F~~fm~~ 198 (504)
.|++||.=|..+.+. .|+.+..|+..+||.- + --+.|++..|...++++++.+=++. .||..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~---- 77 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ---- 77 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH----
Confidence 699999999999999 8888888998888855 2 2256999999999999999987543 33322
Q ss_pred HHhhccccchhhhhhHHH--HHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHH
Q 010666 199 LVHNFRVDNSLLEKRGAL--IIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALN 255 (504)
Q Consensus 199 LL~lF~~dr~LLe~Rg~l--IIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln 255 (504)
..|.+ ..+|+| -=-+|+..+- .+++.|...|..|.+..........|-
T Consensus 78 -----Ae~~~--~~~~sFtslS~tLa~~i~--~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 78 -----AEESK--GPSGSFTSLSSTLASMIM--ELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred -----HHhcC--CCCCCcccHHHHHHHHHH--HHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 11111 233344 1122222222 378888888888888665444444443
No 155
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=67.86 E-value=1.5e+02 Score=30.97 Aligned_cols=61 Identities=10% Similarity=0.039 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHhcCCcccccc----HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVPY----YADILGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llpy----lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
|+.|..-.++|+.++..+...++.+ +..+++.+.-.+.|++.+|.+.+.++..++++-+..
T Consensus 134 Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 134 PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999988877765 667889999999999999999999999999988876
No 156
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=67.74 E-value=16 Score=32.04 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
|-+.+.+.-+.....-|.-++.=|.+++.+.+..+-++.|+|..-+.-++..+ ++|..|.++=..|.+.+.. -|
T Consensus 16 f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~----~~ 89 (107)
T PF08064_consen 16 FSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE----ED 89 (107)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH----HH
Confidence 33344443334556779999999999999999999999999999999998887 7999999998888888754 34
Q ss_pred hHhHHH
Q 010666 115 VGPILS 120 (504)
Q Consensus 115 ~~~iv~ 120 (504)
++++++
T Consensus 90 l~~ll~ 95 (107)
T PF08064_consen 90 LGPLLD 95 (107)
T ss_pred HHHHHH
Confidence 455444
No 157
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=67.56 E-value=20 Score=43.84 Aligned_cols=167 Identities=17% Similarity=0.107 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHH----HHHHHHHcCCCChHHHHHHHHHHHHHHhcC---CccccccHHHHHHHHcc
Q 010666 10 RQQADSALWEFLQEIKNSPSVDYGRM----AEILVQRAASPDEFTRLTAITWINEFVKLG---GDQLVPYYADILGAILP 82 (504)
Q Consensus 10 R~~ae~lL~~FLkeIk~~~~vD~~~i----I~ILv~~l~s~e~~iRltaL~WI~efl~i~---~~~llpylp~iL~~lLp 82 (504)
|.+|+-.|.-|-+-+-.+-..-++.+ ..-|...+.+.|++ ++-+..|..+. +..+-| +-..+..++.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~-----~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~ 823 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEF-----LSSFEVFNSLAPLMHSFLHP-LGSLLPRLFF 823 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcch-----hhhHHHHHHHHHhhhhhhhh-hhhhhhHHHH
Confidence 77788777777666543322233433 33455555555432 22222222222 222223 3344556778
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 83 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 83 ~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
|+-+.+..+|-+|.++-..+.+.-.. --+..+++.+...+.+. +..-|..|-.=+..+-...-..+.+|..-+.|
T Consensus 824 ~~~s~~~a~r~~~ar~i~~~~k~~~~----e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~ 899 (1549)
T KOG0392|consen 824 FVRSIHIAVRYAAARCIGTMFKSATR----ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVV 899 (1549)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehh
Confidence 88899999999999998877665321 01244556666666543 34446666666666666666677788889999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.||..+||..|.|+..+-+..+.+-
T Consensus 900 pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 900 PLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred hhhcccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 158
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.22 E-value=1.3e+02 Score=34.59 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCC--------CCchHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhc
Q 010666 13 ADSALWEFLQEIKNSP--------SVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKL 64 (504)
Q Consensus 13 ae~lL~~FLkeIk~~~--------~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl~i 64 (504)
.....+.+||-+.+.+ ..|..++...++.||..-+ +...-....|+..+..-
T Consensus 137 s~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 137 TNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred CHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH
Confidence 3344566666665432 2366777778888886443 33344556677766554
No 159
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=67.19 E-value=2.2e+02 Score=36.93 Aligned_cols=188 Identities=14% Similarity=0.189 Sum_probs=114.8
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHcCCCC-hHHHHHHHHHHHHH----Hhc--------------------------
Q 010666 16 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEF----VKL-------------------------- 64 (504)
Q Consensus 16 lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e-~~iRltaL~WI~ef----l~i-------------------------- 64 (504)
+.++|+.-|...+.--|...|..|.+++.... ..+=++|+.-+.-+ .+-
T Consensus 1251 I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 1330 (1780)
T PLN03076 1251 IIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQ 1330 (1780)
T ss_pred HHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 34566655554334458899999999996553 44555555544322 110
Q ss_pred ------CCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC-------hHhHH----HHHHHhcC
Q 010666 65 ------GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-------VGPIL----SIATRQLS 127 (504)
Q Consensus 65 ------~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d-------~~~iv----~vL~~~L~ 127 (504)
...+...+-=-+|.++-.+..|+.+|||.-|.++.-+.+ ..+|..|+ +..++ +.+.....
T Consensus 1331 ~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL---~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~ 1407 (1780)
T PLN03076 1331 ESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL---RNHGHLFSLPLWERVFESVLFPIFDYVRHAID 1407 (1780)
T ss_pred cccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH---HHhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 001111222345566666677899999999888765555 44566666 33333 33322111
Q ss_pred ---------------CC------C-HHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 128 ---------------SE------W-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 128 ---------------s~------~-e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
++ . -+|-.-||+=+..|+.++=+.+-...++++..|..|...+.+.+..-....+.++
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~l 1487 (1780)
T PLN03076 1408 PSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRL 1487 (1780)
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 00 1 2567777777788888887777777888888888888888777766666555554
Q ss_pred h-h-----chhhHHHHHHHHHhhcccc
Q 010666 186 A-K-----DLQHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 186 s-~-----~~~~F~~fm~~LL~lF~~d 206 (504)
- . ++++...++..+.++|..-
T Consensus 1488 i~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1488 MSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 4 1 4666777777777777643
No 160
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.11 E-value=1.3e+02 Score=34.03 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=22.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhccccChHH
Q 010666 216 LIIRRLCVLLDAERVYRELSTILEGEADLDF 246 (504)
Q Consensus 216 lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F 246 (504)
-.|+++...++++.+++.+..++....|+.+
T Consensus 310 ~~i~~~a~~~s~~~l~~~~~~~~~~~~~l~~ 340 (546)
T PRK14957 310 DIINNILAKISIEQAHFLYQLTITAKKDIAL 340 (546)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc
Confidence 4778888889998888877777765444433
No 161
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=65.71 E-value=1.9e+02 Score=30.76 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCC-----------CCCC---Ch
Q 010666 50 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP-----------ADGF---DV 115 (504)
Q Consensus 50 iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~-----------~~~~---d~ 115 (504)
+-.-.+.=++.|+.-.|..|+.....-+..+++.+-+...+||..|..+-..+-..+... .... -|
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~ 229 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKL 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccH
Confidence 444455667788888999999999999999999999999999999888776665444321 0001 12
Q ss_pred H-hHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hch
Q 010666 116 G-PILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDL 189 (504)
Q Consensus 116 ~-~iv~vL~~~L~s-~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is----~~~ 189 (504)
. .+.+.|...+.+ ++...-...--|+..|+....-+--+|+...+...-+|+.++++.|...|+..|..+. .++
T Consensus 230 ~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~ 309 (372)
T PF12231_consen 230 IQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNE 309 (372)
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 2 223345555545 3322233333445555532222334677788888889999999999999999999876 233
Q ss_pred hhHHHHHHHH----Hhhccccchh---hhhhHHHHHHHHhhcC
Q 010666 190 QHFRQLVVFL----VHNFRVDNSL---LEKRGALIIRRLCVLL 225 (504)
Q Consensus 190 ~~F~~fm~~L----L~lF~~dr~L---Le~Rg~lIIRqLC~~L 225 (504)
...++.+.-| ...++.+... .+.| ..++-.+|..+
T Consensus 310 ~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~-~~ll~~l~~ll 351 (372)
T PF12231_consen 310 LTSPKRLKLLCQPLSSQLRREKSSKTKEEVW-WYLLYSLCNLL 351 (372)
T ss_pred cccHHHHHHHHHHHHHHhCccccccccHHHH-HHHHHHHhchH
Confidence 3344444444 2333333211 0334 45677777765
No 162
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.95 E-value=1.5e+02 Score=29.36 Aligned_cols=78 Identities=23% Similarity=0.191 Sum_probs=58.7
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhhch-hhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh-HHHHHHHHH
Q 010666 160 FDTLLKALS-DPSDEVVLLVLEVHACIAKDL-QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-ERVYRELST 236 (504)
Q Consensus 160 fp~LLksLS-D~sdeVv~~~L~LLa~Is~~~-~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a-E~Iy~~La~ 236 (504)
+|.|+..+. ..++++....++.|...+..+ .....+++-|..+-.++...+ +.+.+|.+|..... .++|..|-.
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~---~~~~~rLl~~lw~~~~r~f~~L~~ 78 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLEL---RYVALRLLTLLWKANDRHFPFLQP 78 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhH---HHHHHHHHHHHHHhCchHHHHHHH
Confidence 456666444 457899999999999999655 777888888888877776543 47889999999876 477777776
Q ss_pred hhcc
Q 010666 237 ILEG 240 (504)
Q Consensus 237 iL~~ 240 (504)
.|..
T Consensus 79 ~L~~ 82 (234)
T PF12530_consen 79 LLLL 82 (234)
T ss_pred HHHH
Confidence 6644
No 163
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=64.66 E-value=1.3e+02 Score=34.71 Aligned_cols=54 Identities=7% Similarity=0.191 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhccCC--------CCchHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHH
Q 010666 9 IRQQADSALWEFLQEIKNSP--------SVDYGRMAEILVQRAASPD--EFTRLTAITWINEFV 62 (504)
Q Consensus 9 VR~~ae~lL~~FLkeIk~~~--------~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl 62 (504)
+..+.....+.|||-|.+.+ .-|..++.+.++.||..-. +...--...||...+
T Consensus 128 ah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 128 VHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred hHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 34444456666777666543 2356788888888886432 233333444444444
No 164
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=62.60 E-value=2.2e+02 Score=30.34 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=101.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCc-----hHHHHHHHHHHcCC----CCh---HHHHHHHHHHHHHHhc-----
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAAS----PDE---FTRLTAITWINEFVKL----- 64 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD-----~~~iI~ILv~~l~s----~e~---~iRltaL~WI~efl~i----- 64 (504)
|+..+++=|--|=..|.+.|+.--..+..+ .+-++..+...+.+ .+| ..=.-|++-+.-|+.-
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 455666666666667777777665444332 33344444444443 122 2333566666666633
Q ss_pred --CCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCC--CCC----CChHhH---HHHHHHhcCCCCHHH
Q 010666 65 --GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP--ADG----FDVGPI---LSIATRQLSSEWEAT 133 (504)
Q Consensus 65 --~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~--~~~----~d~~~i---v~vL~~~L~s~~e~T 133 (504)
+++ +.--+++..+.++.++... + .+-...|..+... +.. --.+.+ +..+..++.+.+ +
T Consensus 82 ~l~~d----~~~~~i~~~i~~l~~~~~~-K----~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~s--i 150 (372)
T PF12231_consen 82 TLSDD----FASFIIDHSIESLQNPNSP-K----SICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKS--I 150 (372)
T ss_pred hCChH----HHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchh--H
Confidence 222 1124666666677665521 1 1222333334331 111 112233 334444554444 3
Q ss_pred HHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 134 RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 134 RlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
-..+|.=+.-|..++|..|..+.+.-||.++..+-+...++..+++.++..++
T Consensus 151 ~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 151 ISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 34455556789999999999999999999999999999999999998888776
No 165
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=62.25 E-value=1.3e+02 Score=27.79 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=60.8
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-hh-HHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LN-DIFDTLLKALSD-PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~-~~-~lfp~LLksLSD-~sdeVv~~~L~LLa~Is 186 (504)
...-...+..|...+.+.++.+.+-||.=|..+.+.++..+... .+ .++..|.+.+++ ...+|..+.++++..-+
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999999999999999887643 23 344566666777 57899999999988876
No 166
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=62.02 E-value=2e+02 Score=33.12 Aligned_cols=174 Identities=24% Similarity=0.302 Sum_probs=92.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh----hchhhHHHHHHHHHhhccccchhhhhh--HHHHHHHHhhcCChHHHHHHHH
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKR--GALIIRRLCVLLDAERVYRELS 235 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is----~~~~~F~~fm~~LL~lF~~dr~LLe~R--g~lIIRqLC~~L~aE~Iy~~La 235 (504)
.|+..++| .+|+.-.|..+...+ .-..-.++++...+...++..- ++| +-++++.+|...++.-+...|-
T Consensus 248 ~Ll~~~t~--te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~--~~rv~Afl~l~~l~~~~~~~~l~~vlk 323 (661)
T KOG2256|consen 248 HLLNQLTD--TEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEE--SLRVLAFLCLIDLCRKFKSTCLDPVLK 323 (661)
T ss_pred HHHHHcch--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCc--chhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45676665 456665555555554 3345556667777777787743 444 3348899999998854443333
Q ss_pred Hhhc---------cccChHHHHHHHHHHHHHhcCchhHH-------------HHHHHHHhhcCCcchhHHHHHHHHHhcc
Q 010666 236 TILE---------GEADLDFACTMVQALNLILLTSSELS-------------ELRDLLKKSLVNPAGKDLFVSLYASWCH 293 (504)
Q Consensus 236 ~iL~---------~~~Dl~F~~~mVq~Ln~iLLTs~El~-------------~lR~~L~~~l~~~~~~~lF~~L~~sWch 293 (504)
.... .-+++.+.+-|=-.+=..+...++.. .||+.+.. .++++.. ..| .|-|
T Consensus 324 ~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~--k~K~s~~---~VY-nWqf 397 (661)
T KOG2256|consen 324 TMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMIT--KNKESVQ---SVY-NWQY 397 (661)
T ss_pred HHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhc--CCHHHHH---HHH-HHHH
Confidence 3222 12455665556666666666666542 34555544 2333322 333 3433
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHH-HHHHHhhchhhHHHHHHhcC
Q 010666 294 SPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLD-KLIRLLETPIFAYLRLQLLE 352 (504)
Q Consensus 294 n~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD-~LVqLlESPiF~~LRLqLLe 352 (504)
+-||=||++.--.|+..-..+.++ +--|+||= -.++|+.+|-|.-||++++.
T Consensus 398 ----i~cL~lW~rvisf~~~~~s~lq~L---vYpLvQvi~GvirLipT~qy~PLRlhcir 450 (661)
T KOG2256|consen 398 ----VHCLDLWLRVISFANGSASQLQPL---VYPLVQVILGVIRLIPTPQYYPLRLHCIR 450 (661)
T ss_pred ----HHHHHHHHHHHHHhhccHhhhhhh---hhHHHHHHHHHhhhcCcccchhHHHHHHH
Confidence 234444444322121111111111 11233332 25799999999999998764
No 167
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.39 E-value=1.2e+02 Score=33.71 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~ 204 (504)
...+..+++++-+.++. ..++..++++-+...+...|+..|+.+|+
T Consensus 248 ~~~~~~l~~si~~~d~~--~~al~~l~~l~~~G~d~~~~~~~l~~~~r 293 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNH--SKSLEILESLYQEGQDIYKFLWDSIEFTH 293 (484)
T ss_pred HHHHHHHHHHHHcCCcH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34556677777554321 34667777777777789999999998886
No 168
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.77 E-value=43 Score=40.07 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=23.2
Q ss_pred HHHHHhhcCChHHHHHHHHHhhccccChHHH
Q 010666 217 IIRRLCVLLDAERVYRELSTILEGEADLDFA 247 (504)
Q Consensus 217 IIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~ 247 (504)
.|+++...++.+.+++.+-.++....++++.
T Consensus 310 ~i~~~a~~~s~~~L~~~ie~l~~a~~~L~~n 340 (944)
T PRK14949 310 QIRAFAEQLSPEQVQLYYQILLTGRKDLPHA 340 (944)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhC
Confidence 5678888899998888888777665555553
No 169
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=60.45 E-value=1.7e+02 Score=28.49 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=50.5
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 157 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~ 157 (504)
..+..-..+++.=.|++|..+ .+..++ ..|++.+..++...+.+++-.++.|+==+|...-.++|+.+..|++
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~---~l~~~~----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~ 190 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILH---QLKYKE----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVA 190 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHH---HHHHHH----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 333333344445566666543 344443 3566777777888888888888888877788899999999888876
Q ss_pred H
Q 010666 158 D 158 (504)
Q Consensus 158 ~ 158 (504)
.
T Consensus 191 ~ 191 (208)
T cd07064 191 A 191 (208)
T ss_pred H
Confidence 4
No 170
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.28 E-value=4.3e+02 Score=33.09 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC---
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD--- 108 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~--- 108 (504)
+-.+||-|-.-+.+.+++.|+-|++-+..+..-++..+-.-.|.+..+-|.-+.|...+||-.+.++-...+..-.+
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 35577888888899999999999999999999999888777899999999999999999999988886554422110
Q ss_pred --------------CC--------------CC--CChH-hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 010666 109 --------------PA--------------DG--FDVG-PILSIATRQLSSEWEATRIEALHWISTLLNR 147 (504)
Q Consensus 109 --------------~~--------------~~--~d~~-~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k 147 (504)
+. .. ..+. .+++.+.+++.+....+|..|+.=+..+|++
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 00 01 1122 2788889999999999999999999999996
No 171
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=60.27 E-value=14 Score=35.61 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=38.9
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
.++....++.|-.+.. ++.+|..||+||+. .+++++.-|+|.++.++
T Consensus 73 ~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~~---~~d~~l~~yLpQLVQaL 119 (184)
T smart00145 73 PLDPEDALELLSPKFP--DPFVRAYAVERLES---ASDEELLLYLLQLVQAL 119 (184)
T ss_pred CCCHHHHHHHhCccCC--CHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 5667777777776554 78999999999854 78899999999999987
No 172
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=60.03 E-value=2e+02 Score=38.21 Aligned_cols=213 Identities=18% Similarity=0.130 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccC
Q 010666 7 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 86 (504)
Q Consensus 7 ~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd 86 (504)
.++=..|...++.|.-.|.....-+.+..+.-+.+.+++..+.-|..|+.=+.++-.-.|..+.|+++.+...++-..-|
T Consensus 107 ~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~ 186 (2341)
T KOG0891|consen 107 VEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRD 186 (2341)
T ss_pred hHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccC
Confidence 34445556678888887775544455666777777776666666778888888888888999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCC---CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh-----H
Q 010666 87 KEEKIRVVARETNEELRAIKADPAD---GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-----D 158 (504)
Q Consensus 87 ~~~eIR~~A~~~N~~Ll~li~~~~~---~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~-----~ 158 (504)
+++.||..|+..+....-.+.+... .-.|...+..-...|.++... --+++-=..++.+.. ..++.+.+ .
T Consensus 187 ~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~-~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~ 264 (2341)
T KOG0891|consen 187 PKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVK-IHASLLVYNELLRIS-DPFLEKYDSTCVRQ 264 (2341)
T ss_pred CChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHH-hhhHHHHHHHHHHHH-HHHHHhhHHHHHHH
Confidence 9999999999999887777655320 011333333333333333211 001110001111110 00001111 1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---hchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is---~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a 227 (504)
.+-.++ .+...+.++...+..++... -+..|....|+.++....+.. .+.-..|-.+..-++.
T Consensus 265 ~~~~~l--k~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~~~~~i~~ia~al~~ 330 (2341)
T KOG0891|consen 265 AKGKLL--KSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK----TRAFVSIGEIAVALGS 330 (2341)
T ss_pred HHHHHh--ccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhh
Confidence 111221 22344555555555555554 234788888888887776332 5544455555555444
No 173
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=59.81 E-value=13 Score=35.38 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=38.3
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
.++...-+++|-.+. .++.+|..||+||+. .+++++.-|+|.++.++=-
T Consensus 75 ~i~~~~aLeLL~~~f--~~~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLKy 123 (166)
T cd00870 75 KIDIEDALELLSPYF--TNPVVRKYAVSRLKL---ASDEELLLYLLQLVQALKY 123 (166)
T ss_pred CCCHHHHHHHcCccC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHh
Confidence 455566666665553 478999999999995 8899999999999987643
No 174
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.72 E-value=2.4e+02 Score=29.91 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=90.2
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----h
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----L 189 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~-----~ 189 (504)
-+..++-....|.+++=+..+..|+-|.-|-.-+|+.+.+.++.+..++.+++...--.|-.-+...++.|-+. +
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566767778888888899999999999999999999999999999999999999999999999999998731 1
Q ss_pred hhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhc
Q 010666 190 QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILE 239 (504)
Q Consensus 190 ~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~ 239 (504)
+..+..+..|+.-=..|.+..-+=.+-..+.+-....|.++-+.|..++.
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~ 215 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ 215 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 23333444444333344444433334455566666666666666666553
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.59 E-value=1.2e+02 Score=29.39 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhc-CCccccccHHHHHHHH------------cccccCCchHHHHHHHHHHHHHHHhhc-------CC
Q 010666 50 TRLTAITWINEFVKL-GGDQLVPYYADILGAI------------LPCISDKEEKIRVVARETNEELRAIKA-------DP 109 (504)
Q Consensus 50 iRltaL~WI~efl~i-~~~~llpylp~iL~~l------------Lp~Lsd~~~eIR~~A~~~N~~Ll~li~-------~~ 109 (504)
+|..|+.-+..+.+- ++..+-.|-+.++... -..+.|+++.+|.+|..+...+++=.+ +.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 689999999999999 8888878877776554 344568999999999999988775332 11
Q ss_pred C----CCCCh----HhHHH----HHHHhcCCC-CHHHHHHHHHHHHHHHhhchhhhh--hchhHHHHHHHHhcCCCCHHH
Q 010666 110 A----DGFDV----GPILS----IATRQLSSE-WEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEV 174 (504)
Q Consensus 110 ~----~~~d~----~~iv~----vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~~l--~~~~~lfp~LLksLSD~sdeV 174 (504)
. .-..+ +.++. .|..-+..+ +..+-...|+=+..|....|-.=+ ++...+...+.+.+.+.+.+|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 11222 33332 244444444 445566777888888888875443 345556666667777888888
Q ss_pred HHHHHHHHHHHhh
Q 010666 175 VLLVLEVHACIAK 187 (504)
Q Consensus 175 v~~~L~LLa~Is~ 187 (504)
.-.++-++..+.+
T Consensus 162 ~v~~l~~~~~l~s 174 (182)
T PF13251_consen 162 RVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888777653
No 176
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.49 E-value=32 Score=28.94 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=57.7
Q ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 118 ILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 118 iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
++..+..-+ .+.+.++|--.|+=+.++.+.....+-+-+..+|..+-.+..|++++++..+.+.+..|
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 344444443 45688999999999999999999999999999999999999999999999999887654
No 177
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=59.33 E-value=3.9e+02 Score=33.07 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcC-Ccccc-ccHHHHHHHHcccccCCc
Q 010666 11 QQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLV-PYYADILGAILPCISDKE 88 (504)
Q Consensus 11 ~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~-~~~ll-pylp~iL~~lLp~Lsd~~ 88 (504)
..+...|..+|.. + .++++-.+++||+.++- .+-.--..+.++. ..+.. -.+++++..+|-.++|++
T Consensus 488 ~lgr~AL~nLL~~---N-----~dLl~~~IdrCYss~~~---va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~ 556 (1120)
T PF14228_consen 488 SLGRRALKNLLEH---N-----PDLLDWVIDRCYSSSPR---VAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDES 556 (1120)
T ss_pred HHHHHHHHHHHHh---h-----HHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCc
Confidence 3455566666662 2 24788999999998753 3333445555553 22222 245799999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 010666 89 EKIRVVARETNEELR 103 (504)
Q Consensus 89 ~eIR~~A~~~N~~Ll 103 (504)
.+||..|.+...-+-
T Consensus 557 ~eIR~~A~qLL~~Le 571 (1120)
T PF14228_consen 557 SEIRSKAMQLLRALE 571 (1120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776443
No 178
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.15 E-value=19 Score=25.49 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.+.+|.|++.|++++++|...+...+..|+
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999998886
No 179
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=58.64 E-value=1.5e+02 Score=27.38 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhhhch----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 130 WEATRIEALHWISTLLNRHRTEVLHFL----------NDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 130 ~e~TRlaaL~WL~~L~~k~P~~~l~~~----------~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.+.+|.-+|+=|...++.++..+..+- +.+.+.+++.+..++..|...+++++..+-
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~ 101 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLL 101 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 566899999999999999998887433 468999999998888999999999988876
No 180
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=57.86 E-value=2.4e+02 Score=29.34 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHH-HhcC-CccccccHHHHHHHHcccccCCc--hHHHHHHHHHHHHHHHhhcC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEF-VKLG-GDQLVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~ef-l~i~-~~~llpylp~iL~~lLp~Lsd~~--~eIR~~A~~~N~~Ll~li~~ 108 (504)
..+++.+..-++.....=+..|.+=+..+ +.++ +.+--..+..+...+.+.+.|.. ..+|..|..+..-. ..+..
T Consensus 85 ~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~-~fv~~ 163 (309)
T PF05004_consen 85 ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAIC-TFVGG 163 (309)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH-HHhhc
Confidence 34455555555444333344444444444 3443 34444566677777777777764 45666666665433 23322
Q ss_pred CCCCCChHhHHHHHH-----HhcCCC----------CHHHHHHHH-HHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCH
Q 010666 109 PADGFDVGPILSIAT-----RQLSSE----------WEATRIEAL-HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD 172 (504)
Q Consensus 109 ~~~~~d~~~iv~vL~-----~~L~s~----------~e~TRlaaL-~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sd 172 (504)
.+.-++..+++.+. .+...+ +.....||| -|-..+-...+.++-.+.+..+|.|...|..++-
T Consensus 164 -~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~ 242 (309)
T PF05004_consen 164 -SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV 242 (309)
T ss_pred -CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 23334453334333 222211 245677787 7977776666667777788899999888888888
Q ss_pred HHHHHHHHHHHHHh
Q 010666 173 EVVLLVLEVHACIA 186 (504)
Q Consensus 173 eVv~~~L~LLa~Is 186 (504)
+|..-|=+-+|-|-
T Consensus 243 ~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 243 DVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887777777654
No 181
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.42 E-value=4e+02 Score=31.78 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHH----HHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRL----TAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRl----taL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
-.|.+--..|..|...|...+..-++-.+|++---+.-+.|.-.. -.--|...+-..+ .+-|-+=.+.+.++|.
T Consensus 630 lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~--~l~p~ll~L~p~l~~~ 707 (978)
T KOG1993|consen 630 LLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ--KLTPELLLLFPHLLYI 707 (978)
T ss_pred HHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc--ccCHHHHHHHHHHHHH
Confidence 356666678889999998776777788888887776655432211 2233887777662 2334444444455555
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhcCCCCCCCh-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh--chhHHH
Q 010666 84 ISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH--FLNDIF 160 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~-~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~--~~~~lf 160 (504)
++-+.+..+.+-.-++.--+ +..+.---+| ..+.+.+...+.+-.+++-++.|+=+..+.+..| ++. ++.+++
T Consensus 708 iE~ste~L~t~l~Ii~sYil--Ld~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~--il~~~~~~~~L 783 (978)
T KOG1993|consen 708 IEQSTENLPTVLMIISSYIL--LDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP--ILGSLLFSPLL 783 (978)
T ss_pred HHhhhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH--HHHhhhcchhh
Confidence 55454444444333332111 1000000122 4667788888888899999999998888888887 555 666677
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHHh-hchhhHHHHH
Q 010666 161 DTLLKAL--SDPSDEVVLLVLEVHACIA-KDLQHFRQLV 196 (504)
Q Consensus 161 p~LLksL--SD~sdeVv~~~L~LLa~Is-~~~~~F~~fm 196 (504)
|.++++. .|+.+-|.-.-+.++|+|+ -|.+.|-+|+
T Consensus 784 ~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvl 822 (978)
T KOG1993|consen 784 SRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVL 822 (978)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHH
Confidence 7666654 5778889999999999998 4555554443
No 182
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=56.66 E-value=3.7e+02 Score=31.15 Aligned_cols=139 Identities=17% Similarity=0.067 Sum_probs=91.6
Q ss_pred CCCChHHHHHHHHH---HHHHHhcCCc----cccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChH
Q 010666 44 ASPDEFTRLTAITW---INEFVKLGGD----QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG 116 (504)
Q Consensus 44 ~s~e~~iRltaL~W---I~efl~i~~~----~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~ 116 (504)
.+.+|..|..++.= ++++---.+. .++-+.-....-.+|.+. +.+.+.+|+.+-..+-+.|..-..+++-.
T Consensus 341 ~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k--d~~~~aaa~l~~~s~srsV~aL~tg~~~~ 418 (678)
T KOG1293|consen 341 AASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK--DHDFVAAALLCLKSFSRSVSALRTGLKRN 418 (678)
T ss_pred hhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc--cHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 34567777766542 2222211221 233333333333334444 45589999999999888887655568878
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch---hhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 117 PILSIATRQLSSEWEATRIEALHWISTLLNRHR---TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 117 ~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P---~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+++..|.+-+.+.......++|.=|--|.-.+. .+|+. .+....+.+.++|+..-+....+-+|....
T Consensus 419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~--~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR--NNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH--cCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 888888888888887778888877777766554 34442 345677888899999999988888888776
No 183
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.02 E-value=24 Score=35.39 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhh
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 106 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li 106 (504)
..||....++..+-+...+.-.|+.|..=+.+++-..++.++|-+|.++-.|=..|...+.||...+.++.+.+-...
T Consensus 109 ~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 109 KLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred hccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 578999999999999988888999999999999999999999999999999999999999999998988888766544
No 184
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=55.22 E-value=1.2e+02 Score=28.14 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=63.5
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccC-CchHHHHHHHHHHHHHHHh
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISD-KEEKIRVVARETNEELRAI 105 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd-~~~eIR~~A~~~N~~Ll~l 105 (504)
...-.+-+..|..|+.+.++-.++.||+-+..++.-+|..+...+ -++++.+...+++ .+++|++-+..+-......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 445567888999999999999999999999999999998666432 3677777777777 6778888888777777666
Q ss_pred hcC
Q 010666 106 KAD 108 (504)
Q Consensus 106 i~~ 108 (504)
..+
T Consensus 112 f~~ 114 (144)
T cd03568 112 FKN 114 (144)
T ss_pred hCC
Confidence 653
No 185
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.89 E-value=1.3e+02 Score=32.59 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhhchhhhhhc
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST-LLNRHRTEVLHF 155 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~-L~~k~P~~~l~~ 155 (504)
+.-+++.+.|.+.++|+-|..-..+++..... .-...+-+++.-+.....+++-..|-+..+-+.. ++...|+.+-+|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~-~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 56788999999999999998877776665211 1123466778888888889999999999988877 677788888889
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
..-++|-+...+.+..++|...++..+.-..
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll 169 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLL 169 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHH
Confidence 9999999999999999999998887776654
No 186
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=54.39 E-value=1.6e+02 Score=26.42 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=69.2
Q ss_pred ccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh--H
Q 010666 82 PCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--D 158 (504)
Q Consensus 82 p~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~--~ 158 (504)
+.+.+++ .-+-+.|..+|.. ...-...+..|..++.+.++.+++-||.=|..+....+..+...+. .
T Consensus 11 ~~~~~~D~~~il~icd~I~~~----------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~ 80 (133)
T cd03561 11 PSLEEPDWALNLELCDLINLK----------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE 80 (133)
T ss_pred cccCCccHHHHHHHHHHHhCC----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH
Confidence 3344444 2355555555532 3455788999999999999999999999999999999887754333 2
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHHh
Q 010666 159 IFDTLLKALSD---PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 159 lfp~LLksLSD---~sdeVv~~~L~LLa~Is 186 (504)
.+..+.+.++. .+.+|..++++++..-+
T Consensus 81 fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 81 FLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 34456676665 37899999999988776
No 187
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=54.19 E-value=1.6e+02 Score=26.54 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc-HH-HHHHHHcccccC---CchHHHHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YA-DILGAILPCISD---KEEKIRVVARETNEELR 103 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy-lp-~iL~~lLp~Lsd---~~~eIR~~A~~~N~~Ll 103 (504)
...-..-+..|..|+.++++-.|+.|+.-+..++.-+|..+... .. +++..+.+.++. .+++||+-+.++-....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999877543 33 566667777765 36788888888887777
Q ss_pred HhhcC
Q 010666 104 AIKAD 108 (504)
Q Consensus 104 ~li~~ 108 (504)
.....
T Consensus 112 ~~f~~ 116 (133)
T cd03561 112 ESFGG 116 (133)
T ss_pred HHhcC
Confidence 76654
No 188
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.01 E-value=4.8e+02 Score=31.67 Aligned_cols=238 Identities=19% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhcCCccc----ccc-----
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKLGGDQL----VPY----- 72 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl~i~~~~l----lpy----- 72 (504)
|+++++|.+||+-|.++=|.+- ++.-|.+-+-+.+ .-+|+.|.-.++..+.-+=..- .|+
T Consensus 15 d~d~~~R~~AE~~L~q~~K~pg---------Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLEKQPG---------FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEE 85 (1010)
T ss_pred CCChHHHHHHHHHHHHhhcCCc---------HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChH
Q ss_pred -HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch--
Q 010666 73 -YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-- 149 (504)
Q Consensus 73 -lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P-- 149 (504)
=+-+-+.|++.+....+-||..-..+....... ...-+.+.++......+.+++...-..||-=+..|.+.|.
T Consensus 86 dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~----D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k 161 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQVPELIRVQLTACLNTIIKA----DYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWK 161 (1010)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhc----CCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhc
Q ss_pred -----hhhhhchhHHHHHHH----HhcCCCCHHHHHHHHHHHH--HHh---------hchhhHHHHHHHHHhhcccc---
Q 010666 150 -----TEVLHFLNDIFDTLL----KALSDPSDEVVLLVLEVHA--CIA---------KDLQHFRQLVVFLVHNFRVD--- 206 (504)
Q Consensus 150 -----~~~l~~~~~lfp~LL----ksLSD~sdeVv~~~L~LLa--~Is---------~~~~~F~~fm~~LL~lF~~d--- 206 (504)
.-+-..++.+||.++ .-++++|.+++.....++. +-+ .+.+.|...|.-++......
T Consensus 162 ~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~ 241 (1010)
T KOG1991|consen 162 KDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPV 241 (1010)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCCh
Q ss_pred --chh------------hhhhHHHHHHHHhhcCCh--HHH--HHHHHHhhccccChHHHHHHHHHHHHHh
Q 010666 207 --NSL------------LEKRGALIIRRLCVLLDA--ERV--YRELSTILEGEADLDFACTMVQALNLIL 258 (504)
Q Consensus 207 --r~L------------Le~Rg~lIIRqLC~~L~a--E~I--y~~La~iL~~~~Dl~F~~~mVq~Ln~iL 258 (504)
-.+ =++=|-.|.-++|...|. -.+ |+.+|.+- ...||..+-|++=.++
T Consensus 242 E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f----~~n~~~~ile~~lk~l 307 (1010)
T KOG1991|consen 242 EVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMF----LKNFAQGILEVFLKIL 307 (1010)
T ss_pred hcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHH----HHHHHHHHHHHHHHHH
No 189
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=53.63 E-value=2.5e+02 Score=28.25 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCc--hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc---cc------ccHHHH
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ---LV------PYYADI 76 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD--~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~---ll------pylp~i 76 (504)
.++..++ .+-..|-++|....|+ ++.|..+-..-..++++..+..--.|+.++++.-... ++ .=+|-+
T Consensus 93 ~i~~ig~-~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~ 171 (255)
T PF10350_consen 93 QIEKIGE-LLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFL 171 (255)
T ss_pred HHHHHHH-HHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHH
Confidence 4555554 5555556666554444 4555555444445667778888889999999874443 31 127888
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc--hhhhhh
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH--RTEVLH 154 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~--P~~~l~ 154 (504)
+.+|+..-....+ ..-..+-..|+++...+... ...+.....|+-||+=|..++.-. ..++.+
T Consensus 172 i~aiL~ae~~~~~---~ll~~~~~~Ll~ia~~~~~~------------~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~ 236 (255)
T PF10350_consen 172 ILAILSAEPSNSR---PLLHRTMKSLLEIAKSPSTQ------------HEDEKSDLPQVHALNILRAIFRDSKLSEDVSP 236 (255)
T ss_pred HHHHHhcCCCcch---hHHHHHHHHHHHHhcCCccc------------ccccccchHHHHHHHHHHHHHhcchhHHHHHH
Confidence 8888877555443 66777777788877664331 011111356777777777776644 356677
Q ss_pred chhHHHHHHHHhcCCC
Q 010666 155 FLNDIFDTLLKALSDP 170 (504)
Q Consensus 155 ~~~~lfp~LLksLSD~ 170 (504)
|+...+-.-++.++++
T Consensus 237 yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 237 YIEDALILAIKGFSSP 252 (255)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 7777777767776654
No 190
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.60 E-value=1e+02 Score=28.51 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHH--HHHHHHcccccC------CchHHHHHHHHHHHHHH
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISD------KEEKIRVVARETNEELR 103 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp--~iL~~lLp~Lsd------~~~eIR~~A~~~N~~Ll 103 (504)
-..-+..|..|+.+.++-.++.||+-+..+++-+|..+...+. +++..+.+.++. .+++|++-...+-....
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999987765433 566666666653 45788887777776666
Q ss_pred Hhhc
Q 010666 104 AIKA 107 (504)
Q Consensus 104 ~li~ 107 (504)
....
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 6554
No 191
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=53.10 E-value=1.7e+02 Score=34.49 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
|-..+||++|...|-.+....- ....-..+++.++.-....+-..|+|.+.=|++|..+.|.++. .-.++..+...
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l 604 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDL 604 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHh
Confidence 4445899999888888877665 3566677788887777766778899999999999999998764 45677777778
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHH-HHHHhcCCCCHHHHHHHHH
Q 010666 84 ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS-IATRQLSSEWEATRIEALH 139 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~-vL~~~L~s~~e~TRlaaL~ 139 (504)
..|+.++||-=+.+....+++.+... . .+..|- .+..-..+++...|..|..
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~L~~~---~-~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKLLDES---V-RDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhhcchH---H-HHHHHHHHHHHhccCcccchhHHHHH
Confidence 99999999988888888877776441 2 233333 3333334777777887763
No 192
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=53.02 E-value=2e+02 Score=26.90 Aligned_cols=78 Identities=17% Similarity=0.024 Sum_probs=63.0
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 157 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~ 157 (504)
..+.+-..++++=+|+.|..+...+..- .-+.+.++.++.....+++..+|.|+=-+|.....++|+.+++|..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4677777788888888887776443332 3457889999998888999999999999999999999999998887
Q ss_pred HHHH
Q 010666 158 DIFD 161 (504)
Q Consensus 158 ~lfp 161 (504)
..-.
T Consensus 182 ~~~~ 185 (197)
T cd06561 182 KNGL 185 (197)
T ss_pred HHHH
Confidence 6543
No 193
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.80 E-value=2.9e+02 Score=29.84 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=105.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHhcCCcccc-ccHHHHHHHHcc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFT-RLTAITWINEFVKLGGDQLV-PYYADILGAILP 82 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~i-RltaL~WI~efl~i~~~~ll-pylp~iL~~lLp 82 (504)
+++.-|....++|-+.......--.+-...|.+++.++++..+... =..++..+..+++=-...+- .|..-+..+++|
T Consensus 145 ~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllP 224 (409)
T PF01603_consen 145 PDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLP 224 (409)
T ss_dssp STHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 4445555554455444443332223446778888888888666432 33455555555552222221 134456688888
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch-hhhhhchhHHHH
Q 010666 83 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-TEVLHFLNDIFD 161 (504)
Q Consensus 83 ~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P-~~~l~~~~~lfp 161 (504)
..+.+.-. .-....+.-+...+.. +.--...++.-+..+-=-.+....+.-|+=+..+.+..| .++......+|.
T Consensus 225 Lh~~~~~~--~y~~~L~~~~~~f~~k--dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~ 300 (409)
T PF01603_consen 225 LHKSPHLS--SYHQQLSYCVVQFLEK--DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFK 300 (409)
T ss_dssp GGGSTGGG--GTHHHHHHHHHHHHHH---GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HhcCCcHH--HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88887521 1112222222222222 112245677888888888888889999999999998665 566678888999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 010666 162 TLLKALSDPSDEVVLLVLEVHAC 184 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~ 184 (504)
-+-+|++.+.-.|.++||.+|..
T Consensus 301 ~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 301 RLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHHhCCCCHHHHHHHHHHHCC
Confidence 99999999999999999988754
No 194
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.24 E-value=1.8e+02 Score=26.26 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-hH-HHHHHHHhcCCCC--HHHHHHHHHHHHHHh
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-ND-IFDTLLKALSDPS--DEVVLLVLEVHACIA 186 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~-~~-lfp~LLksLSD~s--deVv~~~L~LLa~Is 186 (504)
...-...+..|...+.+.++.+.+-||.=+..+...++..+...+ +. ++..|.+.++++. ++|..+.++++..-+
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 344578889999999999999999999999999999988875433 33 4445556666543 349999999988765
No 195
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=52.21 E-value=69 Score=30.42 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=60.7
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
|.....+...+.++++=+|++|..+- +..+.. -+++.++.++...+.+++..+|.++=-+|..+..++|+.+.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~---~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVML---LRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCT---TTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH---HHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 56677777788888888888886653 333332 56788889999999999999999999999999999999998
Q ss_pred hchhH
Q 010666 154 HFLND 158 (504)
Q Consensus 154 ~~~~~ 158 (504)
+|+..
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87665
No 196
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=51.56 E-value=1.1e+02 Score=29.42 Aligned_cols=93 Identities=11% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHH-------HhhcCCCCCCChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 90 KIRVVARETNEELR-------AIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 90 eIR~~A~~~N~~Ll-------~li~~~~~~~d~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
.|++.|..++...- ..+.......+...+.+.+..-+. +..+-+|+|++-.+.++.+|...+.-. -.++.
T Consensus 30 ~I~~~Ce~I~~~Y~~d~n~mcd~i~~~~~S~~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~~~~~t--i~m~~ 107 (167)
T PF11099_consen 30 QIKNCCEKIKNDYKRDFNSMCDIIEANDISYNIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKWGNKNKT--IHMDS 107 (167)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHCCCCTT-HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH--HHCC--CHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccccHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHHhhccch--hhHHH
Confidence 36777777765432 333333334577999999998888 555889999999999999998654321 11222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVF 198 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~ 198 (504)
.+ ++ ++...|++++++|-.|++.
T Consensus 108 ~l----~~----------dIi~~is~~~~~~I~fI~~ 130 (167)
T PF11099_consen 108 LL----SN----------DIIDKISENSKDFIDFIQK 130 (167)
T ss_dssp HH----HH----------HHHHHHHSSHHHHHHHHHC
T ss_pred HH----HH----------HHHHHhhhhHHHHHHHHHH
Confidence 22 22 5566788888888877764
No 197
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.40 E-value=8.9e+02 Score=33.72 Aligned_cols=265 Identities=15% Similarity=0.094 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHhcc--CCC-CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc
Q 010666 9 IRQQADSALWEFLQEIKN--SPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 85 (504)
Q Consensus 9 VR~~ae~lL~~FLkeIk~--~~~-vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls 85 (504)
.|.+|..+|..-++-..- ... -+-+++|.++..-+++..+++..++..=++-++.-...---..+-.-+..++-+|+
T Consensus 1249 Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1249 LRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred chhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 366666666666554431 111 23589999999999999999999999888888877444333455666778888899
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCC------------CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 86 DKEEKIRVVARETNEELRAIKADP------------ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 86 d~~~eIR~~A~~~N~~Ll~li~~~------------~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
|.... -.....-...+++++... .....-..+.+.....+....+.+..+|+.= +....|....
T Consensus 1329 d~~~l-sv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~---~f~~lp~~~~ 1404 (3550)
T KOG0889|consen 1329 DHNNL-SVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIIN---LFHLLPPAAD 1404 (3550)
T ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHH---HHHhccHHHH
Confidence 87641 111222233344433221 1111112222233333444455555555432 2333333332
Q ss_pred hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHH
Q 010666 154 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRE 233 (504)
Q Consensus 154 ~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~ 233 (504)
.+++ .|+-+..|.... | . .+....|..-+...++.|+++.. .+++-+ +
T Consensus 1405 ~~~~----~Ll~~v~~~e~~-----L----~-~~~~sp~r~pl~kfl~r~~~~tv------~~f~~~----~-------- 1452 (3550)
T KOG0889|consen 1405 KFLD----ELLLCVVLLEEV-----L----R-KEENSPFREPLLKFLNRFANPTV------DYFLAQ----L-------- 1452 (3550)
T ss_pred HHHH----HHHHHHHHHHHH-----H----H-HhcCChhhhHHHHHHHHccCchH------HHHHHH----c--------
Confidence 2222 233332221111 1 1 12345666666666777776632 222222 2
Q ss_pred HHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHH-HHHHHHHhccChHHHHHHHHHHhhHHHHH
Q 010666 234 LSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDL-FVSLYASWCHSPMAIISLCLLAQTYHHAS 312 (504)
Q Consensus 234 La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~l-F~~L~~sWchn~vs~lsLcLl~q~Ye~A~ 312 (504)
++..|.++++-.++ .+++.++|..+.+ .+.- ..-+..+-.++++...+.|.-.|+-..++
T Consensus 1453 --------~~~~~~~~f~~~~~-----~~~~~~l~e~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 1513 (3550)
T KOG0889|consen 1453 --------DEPDLYRMFVYALR-----IDDLLPLREVLAK------EWLEFYTLLDPEISSYTVPNMASDIQFQMVPLIS 1513 (3550)
T ss_pred --------chHHHHHHHHHHHc-----ccchhHHHHHHhh------hHHHHHHhccCccCccccchhhcchhhhhhHHHH
Confidence 33444444443332 3566677777765 1222 22233344555566678888888888888
Q ss_pred HHHHHhhccccchHHH
Q 010666 313 AVIQSLVEEDLNVKFL 328 (504)
Q Consensus 313 ~li~~~~~~eitv~~L 328 (504)
.+++.+++-.++..+.
T Consensus 1514 ~~vk~~~e~~~s~~~i 1529 (3550)
T KOG0889|consen 1514 TMVKNDDEWLLSSQFI 1529 (3550)
T ss_pred HHHhccHHHhhccchH
Confidence 7776666666664443
No 198
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=50.35 E-value=98 Score=33.14 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCccccccHHHHHHHHccccc-C--CchHHHHHHHHHHHHHHHhhcC-------CCCCCChHhHHH
Q 010666 51 RLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-D--KEEKIRVVARETNEELRAIKAD-------PADGFDVGPILS 120 (504)
Q Consensus 51 RltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls-d--~~~eIR~~A~~~N~~Ll~li~~-------~~~~~d~~~iv~ 120 (504)
|..|..-++.+.+--+..+.+-+..++..++...+ + .+..-++.|...-..+..-... .+..+|+.+...
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 77888899998888777777776777766665322 2 2334555665555554433221 123356555543
Q ss_pred -HHHHhcC---CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHH
Q 010666 121 -IATRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 178 (504)
Q Consensus 121 -vL~~~L~---s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~ 178 (504)
.+...|. +.++-.|..|++-+.++.+..|.+. ...++|.+...|.+++.-|-..|
T Consensus 308 ~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~---l~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 308 QHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQ---LLQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp HHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHH---HHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHHhCCCCcchhhhh
Confidence 2333333 5667789999999999999999864 45899999999998777665544
No 199
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=50.28 E-value=2.1e+02 Score=26.40 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=59.1
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh--HHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSD------PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~--~lfp~LLksLSD------~sdeVv~~~L~LLa~Is 186 (504)
-...+..+...+.+.++.+.+-||.=|..+.+.++..|...+. ..+..+++.+++ .+.+|..+.++++..-+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999998865433 344577777764 57899999999988776
No 200
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=49.17 E-value=51 Score=28.85 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHH-HHHHHHhcCCccccccHHHHHHHHccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~-WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
.+..-|..|-..++++++........-.++|+..|..-+..+ +.|..+++ |-.-+-.++++++-|+++.++.+++|.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 445667778888999999655554555788999998887755 45555555 888888899999999999999999997
Q ss_pred cc
Q 010666 84 IS 85 (504)
Q Consensus 84 Ls 85 (504)
+.
T Consensus 105 ~~ 106 (107)
T PF08064_consen 105 WD 106 (107)
T ss_pred cc
Confidence 63
No 201
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.64 E-value=32 Score=34.51 Aligned_cols=97 Identities=22% Similarity=0.209 Sum_probs=77.6
Q ss_pred CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hc
Q 010666 110 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KD 188 (504)
Q Consensus 110 ~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~ 188 (504)
.+.+||...+.....-+....-..|.-|=+=+..|+...++++++....+++.|=..|...++||+..+|++|.++. +.
T Consensus 107 pe~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 107 PEKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred HHhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 35688888888888888777777899899999999999999999999999999999999999999999999999987 22
Q ss_pred ---hhhHHHHHHHH---Hhhcccc
Q 010666 189 ---LQHFRQLVVFL---VHNFRVD 206 (504)
Q Consensus 189 ---~~~F~~fm~~L---L~lF~~d 206 (504)
..-+-.|-..| +..|+.-
T Consensus 187 ~~vG~aLVPfYRQlLp~~n~~k~~ 210 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVLNTFKNS 210 (262)
T ss_pred cccchhhhhHHHHhhhhhhhhccc
Confidence 23344444444 4455544
No 202
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=47.84 E-value=1.9e+02 Score=25.27 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=41.2
Q ss_pred HhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCH-HH-HHHHHHHHHHHhh
Q 010666 116 GPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EV-VLLVLEVHACIAK 187 (504)
Q Consensus 116 ~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sd-eV-v~~~L~LLa~Is~ 187 (504)
..++..+..-+. +...+.|++|.-=+..|-.+. +..+.++.++++++...-. +- ...++-.+..++.
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-----~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-----PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 455666666666 666777778777777777777 5556666666655543321 11 3556666666663
No 203
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=47.82 E-value=1.7e+02 Score=28.03 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=79.7
Q ss_pred cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHH------HHHHHHHHHHHHH
Q 010666 72 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA------TRIEALHWISTLL 145 (504)
Q Consensus 72 ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~------TRlaaL~WL~~L~ 145 (504)
+.-+++.++++.-+..=..||..|..+-..++..-...-..++.. +.|...+..++.. ...+=-.++ .|.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~---~~L~~i~~~~~~~~~~w~~~~~~F~~l~-~LL 79 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHR---EELQDIFPSESEASLNWSSSSEYFPRLV-KLL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcH---HHHHHHcccccccccccCCHHHHHHHHH-HHh
Confidence 356788889999888888999999999988883321111223322 2233333222211 111111111 222
Q ss_pred hhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hchhhHHHHHHHHHhhccccchhhhhh
Q 010666 146 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 146 ~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is----~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
... .|...++..+.-+...-++.++..+-.-|.... .++..+..++..|++.|++... +.|
T Consensus 80 ~~~-----~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~--~dR 144 (193)
T PF12612_consen 80 DLP-----EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLR--NDR 144 (193)
T ss_pred ccH-----HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCC--CCC
Confidence 221 556667777777777888888887776666554 4677889999999999886544 455
No 204
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=47.54 E-value=4.1e+02 Score=30.34 Aligned_cols=115 Identities=9% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCchHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhcCC--cccc--ccHHHHHHHHccccc-CCchHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASP-------DEFTRLTAITWINEFVKLGG--DQLV--PYYADILGAILPCIS-DKEEKIRVVAR 96 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~-------e~~iRltaL~WI~efl~i~~--~~ll--pylp~iL~~lLp~Ls-d~~~eIR~~A~ 96 (504)
...+++.|.++..+.... +..+...++.|...-+.-.+ ..-+ ..+-.++..+..+.. .+++++|..+-
T Consensus 384 ~~~~~d~i~l~lr~~~~~~~~~~~~~~gl~d~~~~l~~~~~~~~~~~~~~l~~~~~~~~~q~L~~i~~~~p~~~lR~~~~ 463 (633)
T PF08568_consen 384 IISFPDHIYLLLRFLTPSLQSPSFQNKGLEDALLFLLWVALTSSSIELSELPSEVFMQFLQALLLISVYCPSPELRKIAF 463 (633)
T ss_pred cccHHHHHHHHHHhcCccccchhhcchhHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 456888999999988222 24556677777666555444 1222 234455566555554 47899999999
Q ss_pred HHHHHHHHhhcCCCCCCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchh
Q 010666 97 ETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 97 ~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
.+-+.++....+.. -| +.+..-+ .+..+..|..++.|+.....++..
T Consensus 464 ~ll~~iL~~~p~~~---rf----~~i~dlLe~c~~~~~k~~~I~~lKd~i~~a~~ 511 (633)
T PF08568_consen 464 TLLTRILHLFPEET---RF----KFIRDLLENCPFESLKASAIGWLKDEILKALQ 511 (633)
T ss_pred HHHHHHHHHCCcHh---HH----HHHHHHHhcCCCHhHHHHHHHHHHHHHHHHhc
Confidence 99999998875521 23 3333333 367788999999999999977743
No 205
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.33 E-value=1.2e+02 Score=34.45 Aligned_cols=12 Identities=0% Similarity=-0.022 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHH
Q 010666 437 NFASRLQQFEQM 448 (504)
Q Consensus 437 ~~~~ll~~F~~v 448 (504)
.|.++++..++.
T Consensus 449 ~W~~~~~~~~~~ 460 (576)
T PRK14965 449 RWRAFVAFVKGK 460 (576)
T ss_pred hHHHHHHHHHhc
Confidence 699999998643
No 206
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=47.11 E-value=26 Score=33.51 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 46 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 46 ~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
.++.+|.+||+||+. .+++++..|+|.++.++=-
T Consensus 83 ~d~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLKy 116 (171)
T cd00872 83 PDEHVREFAVRCLEK---LSDDELLQYLLQLVQVLKY 116 (171)
T ss_pred CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHc
Confidence 368999999999885 8899999999999988643
No 207
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=46.92 E-value=40 Score=37.37 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=49.3
Q ss_pred hhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh---chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 149 RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 149 P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~---~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
.+++-...+..+|.+|..|+.+.+.|..++++++..|-. .....+-=+..|++.|++.. ++-++|+++.
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~------~s~~vrnfsl 85 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPS------DSSFVRNFSL 85 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCC------CchHHHHHHH
Confidence 567778888999999999999999999999999998851 22333444566777776554 3444455544
No 208
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=46.73 E-value=4.6e+02 Score=29.34 Aligned_cols=167 Identities=13% Similarity=0.051 Sum_probs=95.2
Q ss_pred HHHHHHHcccccC----CchHHHHHHHHHHHHHHHhhcCCC---------CCCChHhHHHHHHHhcC----CCCHHHHHH
Q 010666 74 ADILGAILPCISD----KEEKIRVVARETNEELRAIKADPA---------DGFDVGPILSIATRQLS----SEWEATRIE 136 (504)
Q Consensus 74 p~iL~~lLp~Lsd----~~~eIR~~A~~~N~~Ll~li~~~~---------~~~d~~~iv~vL~~~L~----s~~e~TRla 136 (504)
.+++..++..+.. +++.++..|.-....+.+-.-... .......++..+..++. ..++..++.
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 4556666655554 346678777777777665443321 23334455555555554 444555666
Q ss_pred HHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhh
Q 010666 137 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP---SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 137 aL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~---sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
+|+=|--+ . .+..++.+++.+.+. +..+...|+.-+..+. +.+=+++...|+..|.+...--|-|
T Consensus 510 ~LkaLgN~---g-------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~--~~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 510 YLKALGNL---G-------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA--KHCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHH---T--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG--GT-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHhhcc---C-------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHh--hcCcHHHHHHHHHHhcCCCCChhHH
Confidence 55544333 2 234667787877776 6677778877777663 4445567777788887665445677
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHH
Q 010666 214 GALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQA 253 (504)
Q Consensus 214 g~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~ 253 (504)
..- .-.|-..-++..+...++..+..|.+...++-+...
T Consensus 578 iaA-~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 578 IAA-YLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHH-HHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 444 344444557788999999999888888777655543
No 209
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=46.54 E-value=1.4e+02 Score=34.30 Aligned_cols=128 Identities=19% Similarity=0.177 Sum_probs=83.0
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
.++..-+.|.+.||+-.|...+..+.-.|--...+..+.|=-...++.+....++...-+|-.++.-|.++.=.+-++..
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 45566667777888888887777664443332222222222235577888888888888998888888887766655543
Q ss_pred -hchhHHHHHH-HHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Q 010666 154 -HFLNDIFDTL-LKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 154 -~~~~~lfp~L-LksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~ 204 (504)
.+..+++... +.--+|++.+|-+.+++|+...--+. ++-++++++.|+
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~---~~svdfll~~~~ 547 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS---RKSVDFLLEKFK 547 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc---HHHHHHHHHhhh
Confidence 3444555544 44567999999999999999975221 233444555554
No 210
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.44 E-value=2.2e+02 Score=25.66 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=61.5
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccCCc--hHHHHHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKE--EKIRVVARETNEELRA 104 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd~~--~eIR~~A~~~N~~Ll~ 104 (504)
...-..-+..|..|+.++++-.++.|+.-+..++.-+|..+...+ -++++.+...++++. ++|++-+..+-.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 445567888999999999999999999999999999998776543 347777777777754 3477777777766666
Q ss_pred hhcC
Q 010666 105 IKAD 108 (504)
Q Consensus 105 li~~ 108 (504)
.+.+
T Consensus 112 ~f~~ 115 (133)
T smart00288 112 AFKN 115 (133)
T ss_pred HHcC
Confidence 6544
No 211
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=45.98 E-value=2.7e+02 Score=26.52 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 119 LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 119 v~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
++.+.+.+.+++...|.+|++-+....+.- +-+=...+|+|..-.+|+++.|..+|.+++..+.+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qG----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQG----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 444555677889999999999988887753 22222467889999999999999999999999863
No 212
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=45.45 E-value=34 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010666 143 TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 182 (504)
Q Consensus 143 ~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LL 182 (504)
.+.++.|.-+. .+.+...+.+.|.|+++.|...+++++
T Consensus 5 ~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 5 SIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34444443322 237788999999999999999999874
No 213
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.37 E-value=2.2e+02 Score=26.26 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=60.1
Q ss_pred CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHccccc-CCchHHHHHHHHHHHHHHHhh
Q 010666 30 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCIS-DKEEKIRVVARETNEELRAIK 106 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~iL~~lLp~Ls-d~~~eIR~~A~~~N~~Ll~li 106 (504)
..-.+-+..|..|+.+.++-.++.|+.-+..++.-+|..+... --++++.+...++ ..+++|++-+..+-.......
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4456678889999999999999999999999999998766543 2356666666555 456788888877777776666
Q ss_pred cC
Q 010666 107 AD 108 (504)
Q Consensus 107 ~~ 108 (504)
.+
T Consensus 117 ~~ 118 (142)
T cd03569 117 RN 118 (142)
T ss_pred CC
Confidence 44
No 214
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.31 E-value=5.7e+02 Score=30.00 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCC--------CCchHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhc
Q 010666 15 SALWEFLQEIKNSP--------SVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKL 64 (504)
Q Consensus 15 ~lL~~FLkeIk~~~--------~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl~i 64 (504)
...+.|||-+.+.+ .-|..++...++.||..-+ +........|+..++.-
T Consensus 133 ~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 133 HSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 34455666555432 2356777777778886543 33444555666666554
No 215
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.26 E-value=5.7e+02 Score=29.98 Aligned_cols=260 Identities=17% Similarity=0.133 Sum_probs=166.9
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc------ccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHh---
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ------LVPYYADILGAILPCISDKEEKIRVVARETNEELRAI--- 105 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~------llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l--- 105 (504)
...-.++++...++.+|..|+.-+...=+..|.. =.....+.++.+-..+.|-.-.||..|.+..+.+-+.
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 5677788888888999999999888777776421 1234667777788888888777777777665433211
Q ss_pred -------------hcC---------------------------CCCCCChH--hHH-----HHHHHhcCCCCHHHHHHHH
Q 010666 106 -------------KAD---------------------------PADGFDVG--PIL-----SIATRQLSSEWEATRIEAL 138 (504)
Q Consensus 106 -------------i~~---------------------------~~~~~d~~--~iv-----~vL~~~L~s~~e~TRlaaL 138 (504)
... ++++.|-+ .++ .+++--|.++--++|.||.
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 100 01111111 111 3445555566678999999
Q ss_pred HHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----chhhHHHHHHHHHhhccccchhhhhhH
Q 010666 139 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRG 214 (504)
Q Consensus 139 ~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~----~~~~F~~fm~~LL~lF~~dr~LLe~Rg 214 (504)
.=+.+|-...| .|...-+.-|..-+.|+.++|..+++--|..|+. ++++++.+...|-+.=. +-|-
T Consensus 395 ~Sl~~La~ssP----~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~------dvRe 464 (823)
T KOG2259|consen 395 ASLCSLATSSP----GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSV------DVRE 464 (823)
T ss_pred HHHHHHHcCCC----CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCH------HHHH
Confidence 99999988776 4666777788899999999999999999999883 56777777766643222 1221
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC--CcchhHHHHHHHHHhc
Q 010666 215 ALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLV--NPAGKDLFVSLYASWC 292 (504)
Q Consensus 215 ~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~--~~~~~~lF~~L~~sWc 292 (504)
+ +|.|=...+ -.|++-+.+.|+-| |++ |. ..|.-+.+.|+++-=-
T Consensus 465 ~--l~elL~~~~--------------~~d~~~i~m~v~~l----------------L~~-L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 465 A--LRELLKNAR--------------VSDLECIDMCVAHL----------------LKN-LGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred H--HHHHHHhcC--------------CCcHHHHHHHHHHH----------------HHH-hhhCCCCcHHHHHHHHHHhc
Confidence 1 122211111 25666666666654 222 21 2333467788888777
Q ss_pred cChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHHHHHHHhhchhh
Q 010666 293 HSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIF 343 (504)
Q Consensus 293 hn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVqLlESPiF 343 (504)
.++.=.+| +-.+=+.+.-.|+..|-+++.=-=+-+|+-+++-|-|
T Consensus 512 nH~~lv~s------~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~ 556 (823)
T KOG2259|consen 512 NHRRLVLS------NMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARA 556 (823)
T ss_pred cChhhHHH------HHHHHHHhcccccccCccccChhhhhhhhhhhhhhhh
Confidence 77765554 3344555666777777777766667788888876543
No 216
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=45.11 E-value=2.7e+02 Score=26.28 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=48.2
Q ss_pred HHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHH
Q 010666 60 EFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALH 139 (504)
Q Consensus 60 efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~ 139 (504)
++-.+.......++......-.|+++=+.|++|+.|......+ ..+ ......+.....+...+.|+.|+.
T Consensus 4 ~L~~~~d~~~a~~~~~~~~~~~~~~GV~~p~lr~lak~~~~~~---------~~~-~~~~~l~~~L~~~~~~E~~~la~~ 73 (213)
T PF08713_consen 4 ELEALADPKYAKFMQRYMKEKDPFLGVRTPDLRKLAKDIYKEL---------KLS-EELYELADELWESGYREERYLALL 73 (213)
T ss_dssp HHHHC--HHHHHHHHHHTTTSSB-----HHHHHHHHHHHHHHH---------CTS-HHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhCCCcccccCcCcHHHHHHHHHHHhhc---------ccc-hHHHHHHHHHcCCchHHHHHHHHH
Confidence 4445555555556666666778888889999999999876542 111 444445555557788888999988
Q ss_pred HHHHHHhhchhh
Q 010666 140 WISTLLNRHRTE 151 (504)
Q Consensus 140 WL~~L~~k~P~~ 151 (504)
.+..........
T Consensus 74 il~~~~~~~~~~ 85 (213)
T PF08713_consen 74 ILDKRRKKLTEE 85 (213)
T ss_dssp HHHHCGGG--HH
T ss_pred HhHHHhhhhhHH
Confidence 886655444333
No 217
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=45.07 E-value=85 Score=28.51 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=58.3
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccC-----------CchHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-----------KEEKIRVVARE 97 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd-----------~~~eIR~~A~~ 97 (504)
.-++.++++-|..|+..+++-+++-+|+-|.-++.-++..+...+-+=...|--|.+. ....||+.|.+
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 3568899999999999999999999999999999999888877766655555444442 13568888888
Q ss_pred HHHHHH
Q 010666 98 TNEELR 103 (504)
Q Consensus 98 ~N~~Ll 103 (504)
+...++
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 776554
No 218
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=44.98 E-value=56 Score=38.47 Aligned_cols=143 Identities=11% Similarity=0.130 Sum_probs=101.2
Q ss_pred CCchHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 104 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e----~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~ 104 (504)
..-+++|-.-|.+||+..= .--=..++.=++.++.-+.+.+-.|...+|..+...|++++++.+-+++.+--.|-.
T Consensus 47 p~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~ 126 (819)
T KOG1877|consen 47 PSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFAN 126 (819)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHh
Confidence 3447889999999997431 112246788889999999999989999999999999999999999999988877776
Q ss_pred hhcCC-CCCCChHhHHHHHHHhcCCCCHHH-----HHH------HHHHHHHHHhhchhhhh-hchhHHHHHHHHhcCCCC
Q 010666 105 IKADP-ADGFDVGPILSIATRQLSSEWEAT-----RIE------ALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS 171 (504)
Q Consensus 105 li~~~-~~~~d~~~iv~vL~~~L~s~~e~T-----Rla------aL~WL~~L~~k~P~~~l-~~~~~lfp~LLksLSD~s 171 (504)
.-.+. +-...|+..+.-......+..++- |++ +.-|+...-+..+..-- .|.+.++|.++..++-.+
T Consensus 127 i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e 206 (819)
T KOG1877|consen 127 IEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIE 206 (819)
T ss_pred hcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchh
Confidence 65553 445778888877766665432222 433 33677744444333222 258899999987665433
No 219
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=44.82 E-value=38 Score=31.64 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
.++...-++.|-.+. .++.+|..||+||+. .+++++.-|+|.++.++
T Consensus 68 ~~~~~~aL~LL~~~~--~~~~vr~yAv~~L~~---~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 68 PLSPEDALELLSPKY--PDPVVRQYAVRVLES---ASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCCHHHHHHHcCCcC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 344444444444432 458999999999976 78899999999999987
No 220
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=44.80 E-value=5.8e+02 Score=29.96 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=56.6
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhch
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTLLNR--HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL 189 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k--~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~ 189 (504)
..+|..|+..|.+++++..+.|+.-|..|--- +..+|. -.+++|.|.+-+..++++++..++.+|-++|.+.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~ 362 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP 362 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH
Confidence 35677888999999999999888777766432 334443 4578999999998888999999999999998533
No 221
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=44.79 E-value=40 Score=36.92 Aligned_cols=186 Identities=16% Similarity=0.217 Sum_probs=100.4
Q ss_pred cCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC----CCC-CCC-hHhHHHHHHHhc----CCCCHHH
Q 010666 64 LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD----PAD-GFD-VGPILSIATRQL----SSEWEAT 133 (504)
Q Consensus 64 i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~----~~~-~~d-~~~iv~vL~~~L----~s~~e~T 133 (504)
+++.++-|+...+|..++..+.-+.. .=|+-+|+.|.. ..+ ..+ .+.+++.|+..+ .+.+...
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s-------~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~ 87 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGS-------AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPR 87 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-S-------TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 45678999999999999999976442 224445544432 122 222 234444444433 3332221
Q ss_pred ----HHHHHHHHHHH-HhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchh--hHHHHHHHHHhhcccc
Q 010666 134 ----RIEALHWISTL-LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ--HFRQLVVFLVHNFRVD 206 (504)
Q Consensus 134 ----RlaaL~WL~~L-~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~--~F~~fm~~LL~lF~~d 206 (504)
=-.++.=++.. .+..|+.+-.+-+.+||.+..-|...-.|.+-.+.|++|.+-+... ..-.....|+..+- .
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll-~ 166 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL-S 166 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT-S
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc-C
Confidence 12233323333 3455666777888999999999999999999999999999874221 22222222222222 2
Q ss_pred chhhhhhHHH--HHHHHhhcCCh-----------HHHHHHHHHhhccc--cChHHHHHHHHHHHHHhcCch
Q 010666 207 NSLLEKRGAL--IIRRLCVLLDA-----------ERVYRELSTILEGE--ADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 207 r~LLe~Rg~l--IIRqLC~~L~a-----------E~Iy~~La~iL~~~--~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
..+-|.||+. ++|=|+..+.- +.|+-.+-..+... +.-.| ..|+.|+.+=|
T Consensus 167 p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF-----~LL~~iv~~~p 232 (435)
T PF03378_consen 167 PALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGF-----DLLESIVENLP 232 (435)
T ss_dssp GGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHH-----HHHHHHHHHS-
T ss_pred cchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHH-----HHHHHHHHHCC
Confidence 3455777777 77777653311 45777777777653 23334 45666665543
No 222
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=44.76 E-value=46 Score=24.33 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=30.2
Q ss_pred HhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHH
Q 010666 104 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 140 (504)
Q Consensus 104 ~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~W 140 (504)
.++...+.-++.+.+.+.+..++.+++...|-||++-
T Consensus 5 ~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 5 SIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444445667888999999999999999999999863
No 223
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.29 E-value=1.1e+02 Score=27.86 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=61.5
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccCCc--hH--HHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKE--EK--IRVVARETNEEL 102 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd~~--~e--IR~~A~~~N~~L 102 (504)
...-...+..|..|+.+.++..++.||.-+..++.-+|..+...+ .++++.+...+.++. +. ||+.+.++-...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999998776553 467888777776543 32 787777777766
Q ss_pred HHhh
Q 010666 103 RAIK 106 (504)
Q Consensus 103 l~li 106 (504)
-...
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6665
No 224
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=44.13 E-value=5.7e+02 Score=29.70 Aligned_cols=221 Identities=12% Similarity=0.130 Sum_probs=128.1
Q ss_pred HHHHHHHHhccCCCCch-HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc----CCccccc-cHHHHHHHHcccccCC--
Q 010666 16 ALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKL----GGDQLVP-YYADILGAILPCISDK-- 87 (504)
Q Consensus 16 lL~~FLkeIk~~~~vD~-~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i----~~~~llp-ylp~iL~~lLp~Lsd~-- 87 (504)
..+...+.++....+-. ...+|=++-.+-..++..|..|..|+..+-.- ..+++=+ ..+.+..++... +..
T Consensus 101 ~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~ 179 (727)
T PF12726_consen 101 LFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNY 179 (727)
T ss_pred HHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCC
Confidence 35556666664433333 77778888888888999999999999998774 4555432 333344333333 221
Q ss_pred chHHHHHHHHHHHHHHHhhcCC-----CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhH----
Q 010666 88 EEKIRVVARETNEELRAIKADP-----ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND---- 158 (504)
Q Consensus 88 ~~eIR~~A~~~N~~Ll~li~~~-----~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~---- 158 (504)
+++.-...-.--..+++.+.+. =..+++..+...+..|+.+..+..--..|+=+..|+++.|.++-.....
T Consensus 180 ~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~ 259 (727)
T PF12726_consen 180 NPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQ 259 (727)
T ss_pred ChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHH
Confidence 1211111122222222222210 1125556688899999987755555677888999999999998654332
Q ss_pred ----------HHHHHHHhcCCCCHHHH--------HHHHHHHHHHh--hchhhHHHHHHHHHhhccccchhhhhhHHHHH
Q 010666 159 ----------IFDTLLKALSDPSDEVV--------LLVLEVHACIA--KDLQHFRQLVVFLVHNFRVDNSLLEKRGALII 218 (504)
Q Consensus 159 ----------lfp~LLksLSD~sdeVv--------~~~L~LLa~Is--~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lII 218 (504)
.|..+|....++..... .=....+..+. ...+-.++++..|++.+.+++-. -..
T Consensus 260 ~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~------~~~ 333 (727)
T PF12726_consen 260 VILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFP------DEA 333 (727)
T ss_pred HHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccc------hhH
Confidence 23333333222222111 11222233333 23455778888888888877542 126
Q ss_pred HHHhhcCChHHHHHHHHHhhccccC
Q 010666 219 RRLCVLLDAERVYRELSTILEGEAD 243 (504)
Q Consensus 219 RqLC~~L~aE~Iy~~La~iL~~~~D 243 (504)
|.-|...+...+..++-.....+.+
T Consensus 334 r~~c~~~~~~~L~~~l~~~~~~~~~ 358 (727)
T PF12726_consen 334 RAACLRAGLDALLSTLRSFNDNERS 358 (727)
T ss_pred HHHHHHHHHHHHHHHHHhccccccc
Confidence 7888887777788888887766544
No 225
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=44.06 E-value=55 Score=28.93 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHH
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 120 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~ 120 (504)
-+-|..++.=|.+++.+.+..+-.+.|.|...+..+|. .+|.|..|.++=..|.+.+.+ -|++++++
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~----~~l~~ll~ 95 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE----EELGPLLD 95 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH----HHHHHHHH
Confidence 35588999999999999999999999999999998887 456999999999888888755 34555554
No 226
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=44.05 E-value=31 Score=23.49 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 158 DIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 158 ~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+.+|.|++.|+.++++++..+...+..|+
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 57888888898889999999999998875
No 227
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=43.99 E-value=4.8e+02 Score=28.74 Aligned_cols=172 Identities=10% Similarity=0.113 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCC--CCc--------hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc-ccH
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSP--SVD--------YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYY 73 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~--~vD--------~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll-pyl 73 (504)
++.++.+-.=.+++++|.+-+.-. ..| |..+++ .+...|.++...+..-+.-++.-++...- ..+
T Consensus 66 ~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~----lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l 141 (429)
T cd00256 66 DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN----LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDL 141 (429)
T ss_pred CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH----HHcCCchhHHHHHHHHHHHHHhcCccccchhHH
Confidence 445666666678888888864311 111 344444 44578899999999999988876543211 122
Q ss_pred HHHHHHHcccccCC-chHHHHHHHHHHHHHHHh------hcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHH--HHHHHH
Q 010666 74 ADILGAILPCISDK-EEKIRVVARETNEELRAI------KADPADGFDVGPILSIATRQLSSEWEATRIEAL--HWISTL 144 (504)
Q Consensus 74 p~iL~~lLp~Lsd~-~~eIR~~A~~~N~~Ll~l------i~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL--~WL~~L 144 (504)
+.+++-+...+..+ ..+-..+|..+.+.|++. +-+.+ .++.++++|...- .+.+...-++ -|+..+
T Consensus 142 ~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~---~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 142 DYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD---GVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc---CHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhc
Confidence 33333333333322 244566666776665542 11111 3455555554322 2445555444 899999
Q ss_pred HhhchhhhhhchhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhh
Q 010666 145 LNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAK 187 (504)
Q Consensus 145 ~~k~P~~~l~~~~~lfp~LLksLSD~s-deVv~~~L~LLa~Is~ 187 (504)
....-..+ . -.+++|.+...+.+.. +.|++.++..+.++.+
T Consensus 217 ~~~~~~~~-~-~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 217 NPHAAEVL-K-RLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred cHHHHHhh-c-cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 88754433 2 2579999988888764 7899999988888874
No 228
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=43.53 E-value=59 Score=29.45 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 010666 32 YGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGGDQ--LVPYYADILGAILPCISDKEEKIRVVARETNEELRA 104 (504)
Q Consensus 32 ~~~iI~ILv~~l-~s~e~~iRltaL~WI~efl~i~~~~--llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~ 104 (504)
=-+++.+|+.-+ .+.|+.+-..|..=|.+|+...|.. ++.- -+.=..|+..+++++++||..|..+-+.+|.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 456888888888 4457888888999999999997753 2211 2455678999999999999999999998874
No 229
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=43.46 E-value=1.4e+02 Score=34.50 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=105.1
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHH-HHHhcCC--ccc-------------cccHHHHHHHH
Q 010666 17 LWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWIN-EFVKLGG--DQL-------------VPYYADILGAI 80 (504)
Q Consensus 17 L~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~-efl~i~~--~~l-------------lpylp~iL~~l 80 (504)
+..||.++.-....+..++..-|.+++..-.+++-.--+.|+- .-+.++. .++ -+|--+++..|
T Consensus 256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l 335 (690)
T KOG1243|consen 256 TLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVL 335 (690)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhH
Confidence 4567888875545667778888888877665555444444443 2222221 111 22555688888
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
++..+-++..||-. ..+.+.+.|..-....=-+.|+..+..-+.+.+...|.-.++=|..|..+-....+ ...++
T Consensus 336 ~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L--n~Ell 410 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL--NGELL 410 (690)
T ss_pred HHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh--cHHHH
Confidence 99999999888843 23333333322222222357788999999999999999999999999988866632 22233
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
-.+=+.=.|+...+.+...-++.+|+
T Consensus 411 r~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHhhCccccCcccccceeeecccc
Confidence 33333334666788888877788876
No 230
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=42.82 E-value=8.5e+02 Score=31.85 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=114.7
Q ss_pred CCCchHHHHHHHHHHcCCCChH------HHHHHHHHHHHHHhcCCccccccHHH---HHHHHccc-ccCCchHHHHHHHH
Q 010666 28 PSVDYGRMAEILVQRAASPDEF------TRLTAITWINEFVKLGGDQLVPYYAD---ILGAILPC-ISDKEEKIRVVARE 97 (504)
Q Consensus 28 ~~vD~~~iI~ILv~~l~s~e~~------iRltaL~WI~efl~i~~~~llpylp~---iL~~lLp~-Lsd~~~eIR~~A~~ 97 (504)
...+-..|+..+..=|..+.++ .|.|.+.=|-|+-..--..+.-.-+. +++..+-. -++++.+|+--|..
T Consensus 1080 ~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAid 1159 (1780)
T PLN03076 1080 QKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMD 1159 (1780)
T ss_pred ccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3566666666666656555544 48888877777766654444433333 44443333 35666677666666
Q ss_pred HHHHHHHhhcCCC--CCCChH-hHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHH
Q 010666 98 TNEELRAIKADPA--DGFDVG-PILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 173 (504)
Q Consensus 98 ~N~~Ll~li~~~~--~~~d~~-~iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sde 173 (504)
....+-.-.-+.. .++.++ ..++.+..-+ .+.+.+.|--+++=+..++.-+...+-+-+..+|..+-....|+.++
T Consensus 1160 sLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~ 1239 (1780)
T PLN03076 1160 SLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKN 1239 (1780)
T ss_pred HHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHH
Confidence 5444332222222 234454 5555554433 46677899999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHhhc---------hhhHHHHHHHHHhh
Q 010666 174 VVLLVLEVHACIAKD---------LQHFRQLVVFLVHN 202 (504)
Q Consensus 174 Vv~~~L~LLa~Is~~---------~~~F~~fm~~LL~l 202 (504)
+|..+-+.+..|.++ ...|...++-|.++
T Consensus 1240 iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~F 1277 (1780)
T PLN03076 1240 IVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAF 1277 (1780)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Confidence 999999999999732 24565665555443
No 231
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=42.44 E-value=25 Score=30.55 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 65 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 65 ~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
+++.+-||+|.++..+.-.+.|=.++||.-|.++.+-|++...+
T Consensus 1 ~~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~ 44 (102)
T PF12333_consen 1 QPELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPD 44 (102)
T ss_pred ChHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCCh
Confidence 45678899999999999999999999999999999999988765
No 232
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.05 E-value=2.5e+02 Score=32.43 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=69.1
Q ss_pred HHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHH--HHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHH
Q 010666 101 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEAL--HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 178 (504)
Q Consensus 101 ~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL--~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~ 178 (504)
.|+++..+.+-..++..+|+.+...=.++....|+-.+ .++.-...+.|+. ..+.+++|--+|..+-.++-.|..+.
T Consensus 33 ~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~ 111 (885)
T COG5218 33 ELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG-EELVAGTFYHLLRGTESKDKKVRKRS 111 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHhcccCcchhHHHHH
Confidence 34444444344456677777655544556666666433 3333344466665 67889999999999999999999999
Q ss_pred HHHHHHHhh-----chhhHHHHHHHHHhh
Q 010666 179 LEVHACIAK-----DLQHFRQLVVFLVHN 202 (504)
Q Consensus 179 L~LLa~Is~-----~~~~F~~fm~~LL~l 202 (504)
+|++|.++. ++.-|...+.+|.+.
T Consensus 112 lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 112 LQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999984 466677777777653
No 233
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=41.83 E-value=2.1e+02 Score=24.74 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHH--HHHHcc----ccc--CCchHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI--LGAILP----CIS--DKEEKIRVVARETNE 100 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~i--L~~lLp----~Ls--d~~~eIR~~A~~~N~ 100 (504)
......++..|..|+.++++-.++.+|.-|..++.-+|..+..++..- +.-++. ... +.+..||+-+.++..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 566889999999999999999999999999999999998877765432 222211 111 245778888877665
Q ss_pred H
Q 010666 101 E 101 (504)
Q Consensus 101 ~ 101 (504)
.
T Consensus 112 ~ 112 (115)
T cd00197 112 L 112 (115)
T ss_pred H
Confidence 4
No 234
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=41.71 E-value=37 Score=31.63 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=74.2
Q ss_pred HHcccccC--CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHH-HHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-
Q 010666 79 AILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPIL-SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH- 154 (504)
Q Consensus 79 ~lLp~Lsd--~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv-~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~- 154 (504)
.++.+|.. ..+++|..|.-+-..+++.-++ ++.+.+ +.+...+.....+..+.+..=+..++...|+-.-.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~-----~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAARE-----EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444443 4567899998888888754433 244444 35566666666668999999999999999876654
Q ss_pred -chhHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhc
Q 010666 155 -FLNDIFDTLLKALS--DPSDEVVLLVLEVHACIAKD 188 (504)
Q Consensus 155 -~~~~lfp~LLksLS--D~sdeVv~~~L~LLa~Is~~ 188 (504)
..+++.+.+++..+ .++..+...++++++.-|.+
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d 118 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID 118 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc
Confidence 34577888887777 56788888999999998854
No 235
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.57 E-value=3.3e+02 Score=28.76 Aligned_cols=122 Identities=13% Similarity=0.172 Sum_probs=78.5
Q ss_pred HHHHHHHhccCCCCc--hHHHHHHHHHHcCCC---ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc------
Q 010666 17 LWEFLQEIKNSPSVD--YGRMAEILVQRAASP---DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS------ 85 (504)
Q Consensus 17 L~~FLkeIk~~~~vD--~~~iI~ILv~~l~s~---e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls------ 85 (504)
...-|..+...+.+. +|+++.-+.+.+... +-..-...+.-++.++.-+...+-||+=.++..++.|+-
T Consensus 195 r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~ 274 (343)
T cd08050 195 RREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS 274 (343)
T ss_pred HHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC
Confidence 344456665544333 444444444433221 344455677888899999999999999999999999994
Q ss_pred ----CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC--HHHHHHHHH
Q 010666 86 ----DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALH 139 (504)
Q Consensus 86 ----d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~--e~TRlaaL~ 139 (504)
+++-.+|+.|.++...+.+-.......+ ...+...+...|.+.. ..+..-|+.
T Consensus 275 ~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 275 RPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 3345799999888877776665533333 4567777777776443 333555543
No 236
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=41.24 E-value=82 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=41.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhchhh-hhhchhHHHHHHHHhcCCC
Q 010666 121 IATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALSDP 170 (504)
Q Consensus 121 vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~-~l~~~~~lfp~LLksLSD~ 170 (504)
-+..-+.+=.+++|..|++-|..|++.+|.. +-.+..++++..+.-++-.
T Consensus 15 ~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 15 YISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3444445778999999999999999999999 6678899999888888765
No 237
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=40.37 E-value=2e+02 Score=35.49 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 52 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 52 ltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
..++-.+.+++--+.+++..++|.+|-+++-.+.|..+-|++.|.+..-.|+..+.
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l~ 989 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSLA 989 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHh
Confidence 35777888888888889999999999999999999999999999999988887653
No 238
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=40.26 E-value=7.5e+02 Score=30.75 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=76.3
Q ss_pred CccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010666 66 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 145 (504)
Q Consensus 66 ~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~ 145 (504)
|.++-+|+-.++.++||-+.+...|--.........+.+.+.+ +.+-++.+-.+++ .++--|..+|.|+..--
T Consensus 137 g~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl~k~L~d--~~~fw~~~w~ill-----~~~~~R~g~l~~l~ree 209 (1618)
T COG5221 137 GKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIITLFKSLID--PDVFWSSMWGILL-----NDERLRTGVLNSLMREE 209 (1618)
T ss_pred CccHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHh-----cCccccchHHHHHHHHh
Confidence 5677788889999999999887766554444444445554433 3344566655553 23456888999987622
Q ss_pred hh------chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 146 NR------HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 146 ~k------~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+. ...-+.++..-+..++..+|+|++--|+...|++|-..=
T Consensus 210 NNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDlLl~~f 256 (1618)
T COG5221 210 NNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDLLLFVF 256 (1618)
T ss_pred cCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHHHHHHc
Confidence 11 111255666667789999999988889988888887765
No 239
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.92 E-value=7e+02 Score=29.53 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCC-----------------------CCc-----hHHHHHHHHHHcCCCChHHHHHHHHHH
Q 010666 7 HEIRQQADSALWEFLQEIKNSP-----------------------SVD-----YGRMAEILVQRAASPDEFTRLTAITWI 58 (504)
Q Consensus 7 ~eVR~~ae~lL~~FLkeIk~~~-----------------------~vD-----~~~iI~ILv~~l~s~e~~iRltaL~WI 58 (504)
+.+|...-.+|++.|..-.+.+ +.| +.+-++-|-..+.+.|.-+|..++.=+
T Consensus 274 ~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm 353 (938)
T KOG1077|consen 274 PSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESM 353 (938)
T ss_pred chHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 3566666677888777666332 112 334445555555666666677666666
Q ss_pred HHHHhcCC-ccccccHHHHHHHHccccc-CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHH
Q 010666 59 NEFVKLGG-DQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIE 136 (504)
Q Consensus 59 ~efl~i~~-~~llpylp~iL~~lLp~Ls-d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRla 136 (504)
-.+..-.+ .+-+.+. .+-|+..|. +.+-.||+.|... |..+.. .-+...||.-|.+++.+-+..+|-.
T Consensus 354 ~~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDL---LY~mcD----~~Nak~IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 354 CKLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDL---LYAMCD----VSNAKQIVAELLQYLETADYSIREE 423 (938)
T ss_pred HHHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHH---HHHHhc----hhhHHHHHHHHHHHHhhcchHHHHH
Confidence 55555422 2233332 444445555 5555666555433 333331 2334566777777776665556655
Q ss_pred HHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCC-CHHHHHHHHH
Q 010666 137 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLE 180 (504)
Q Consensus 137 aL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~-sdeVv~~~L~ 180 (504)
-.-=+.-|-+|+..+.-=|.|-++..+ .--+|- ||||..+..|
T Consensus 424 ivlKvAILaEKyAtDy~WyVdviLqLi-riagd~vsdeVW~RvvQ 467 (938)
T KOG1077|consen 424 IVLKVAILAEKYATDYSWYVDVILQLI-RIAGDYVSDEVWYRVVQ 467 (938)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHH-HHhcccccHHHHHHhhe
Confidence 444455566666666554555444433 333333 5555554443
No 240
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=39.73 E-value=27 Score=31.30 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcccc---------chhh--hhhHHHHHHHHhhcCChHHH
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD---------NSLL--EKRGALIIRRLCVLLDAERV 230 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~d---------r~LL--e~Rg~lIIRqLC~~L~aE~I 230 (504)
.++..+.+.+. ..++..+.++.+...++..|+..|+++|+.= ...+ ...-.-.+++++..++.+++
T Consensus 20 ~l~~ai~~~d~---~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 96 (143)
T PF12169_consen 20 ELLDAILEGDA---AEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEEEEKLKELAKKFSPERL 96 (143)
T ss_dssp HHHHHHHTT-H---HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTTHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHcCCH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHHHHHHHHHHHcCCHHHH
Confidence 34444443332 3677788888878888999999998888721 1111 11112256677777777766
Q ss_pred HHHHHHhhccccChH
Q 010666 231 YRELSTILEGEADLD 245 (504)
Q Consensus 231 y~~La~iL~~~~Dl~ 245 (504)
++.+--.++.+.+++
T Consensus 97 ~~~~~~l~~~~~~lr 111 (143)
T PF12169_consen 97 QRILQILLEAENELR 111 (143)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 666555444433333
No 241
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.51 E-value=7.1e+02 Score=29.48 Aligned_cols=177 Identities=18% Similarity=0.145 Sum_probs=104.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 84 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~L 84 (504)
++..||--+=++|...+.+++..+..=|..+..-|..|++..+|-.|.-||.=+.-+-.-++++=.|-.--+.. ++.
T Consensus 97 kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~-liq-- 173 (892)
T KOG2025|consen 97 KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKD-LIQ-- 173 (892)
T ss_pred cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHh--
Confidence 56788888888999999988766555589999999999999999999999998888887766654444322222 222
Q ss_pred cCCchHHHHHHHHHHH----HHHHhhcCCCC------CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch-----
Q 010666 85 SDKEEKIRVVARETNE----ELRAIKADPAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR----- 149 (504)
Q Consensus 85 sd~~~eIR~~A~~~N~----~Ll~li~~~~~------~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P----- 149 (504)
.||.+|||.+|-..-. .+=.++....+ ..-|..++.-+ ++-.-+...|+--|+|=..=.+-+-
T Consensus 174 nDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~ 251 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALV 251 (892)
T ss_pred cCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3677788877644310 01001100000 01122222222 2222333344444444322111110
Q ss_pred ----hhhhhchhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 010666 150 ----TEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA 186 (504)
Q Consensus 150 ----~~~l~~~~~lfp~LLksLSD~-sdeVv~~~L~LLa~Is 186 (504)
..-+.+.++-++.+|..|-=+ +++|.-++++-+=++.
T Consensus 252 d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v 293 (892)
T KOG2025|consen 252 DAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGV 293 (892)
T ss_pred HHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 112355677788888888644 5688888888766643
No 242
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.23 E-value=2.5e+02 Score=32.82 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHHHhhcCChHHHHHHHHHhhccccChHH
Q 010666 217 IIRRLCVLLDAERVYRELSTILEGEADLDF 246 (504)
Q Consensus 217 IIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F 246 (504)
-|+++...++.+.+++..--.+....|+.+
T Consensus 316 ~~~~~a~~~s~~~l~~~~q~~~~~~~el~~ 345 (700)
T PRK12323 316 DIRRLAGRFDAQEVQLFYQIANLGRSELAL 345 (700)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence 345555666665555555544444444444
No 243
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=39.12 E-value=5.2e+02 Score=29.21 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh-h
Q 010666 110 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLEVHACIA-K 187 (504)
Q Consensus 110 ~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLS-D~sdeVv~~~L~LLa~Is-~ 187 (504)
|+.-+|+.+++.+..-....+...=-.-..||..|-...+. +-.-..+++.++|+.-= +-+++++..-++.+..++ .
T Consensus 26 Gd~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~-Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa 104 (563)
T PF05327_consen 26 GDSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSL-LDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSA 104 (563)
T ss_dssp T--HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGG-G-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45566888888876333333322223344899988877743 22236677778877633 568899999999888886 6
Q ss_pred chhhHHHHHHHHHhhccccchhhhh--------------hHHHHHHHHhhcCChHHHHHHHHHhhcc
Q 010666 188 DLQHFRQLVVFLVHNFRVDNSLLEK--------------RGALIIRRLCVLLDAERVYRELSTILEG 240 (504)
Q Consensus 188 ~~~~F~~fm~~LL~lF~~dr~LLe~--------------Rg~lIIRqLC~~L~aE~Iy~~La~iL~~ 240 (504)
...|...++..|++.|......... |.-.++++++...+. .-..|..+|.+
T Consensus 105 ~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~--s~~~L~~~l~~ 169 (563)
T PF05327_consen 105 QPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPT--SPSFLIPILVQ 169 (563)
T ss_dssp -GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GG--GHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 7899999999999999866443322 444577888877766 44555555543
No 244
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=39.02 E-value=1.3e+02 Score=28.22 Aligned_cols=147 Identities=12% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCCchHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhh
Q 010666 28 PSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 106 (504)
Q Consensus 28 ~~vD~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li 106 (504)
|-.+||.+.++|..-+...+ ..+|.-+++-|-.+=.+.|- -=+ .+-....+.. ..+....++...+-..
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~-----~~k---~~~~~~~~~~--~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPY-----KHK---SIQKSLDSKS--SENSNDESTDISLPMM 73 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH-----HHh---cccccCCccc--cccccccchhhHHhhc
Confidence 45789999999999998774 78899888766544433332 111 1111111111 1111222222222211
Q ss_pred cC--CCCCCChHhHHHHHHHhcCCCCHHH-HHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010666 107 AD--PADGFDVGPILSIATRQLSSEWEAT-RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 183 (504)
Q Consensus 107 ~~--~~~~~d~~~iv~vL~~~L~s~~e~T-RlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa 183 (504)
.. ..+++.-.-+++.|...|.+.+-.. .-++..=+..+.+.-..+-.+|++.++|.++..+....+...+-.++-|+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11 1122222223355555554332211 22333333444455556668999999999999988766655555444444
Q ss_pred H
Q 010666 184 C 184 (504)
Q Consensus 184 ~ 184 (504)
.
T Consensus 154 ~ 154 (160)
T PF11865_consen 154 D 154 (160)
T ss_pred H
Confidence 3
No 245
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=38.84 E-value=7.3e+02 Score=29.42 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=104.7
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHH-HHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 36 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA-DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 36 I~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp-~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
++.+++...-....+|+..+.-|.....--+ +.|+- .+-..+..-+-|..-+||+.|......+.... |..-.
T Consensus 481 Lp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~---G~~w~ 554 (759)
T KOG0211|consen 481 LPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF---GSEWA 554 (759)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh---Ccchh
Confidence 3333333333334455555555555544434 22222 22222233355666778888877766655554 43344
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhH
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHF 192 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F 192 (504)
-..++..+.....+++--.|++.+.=+..|....++++. ...++|.+..-..|+.++|.-.+...+..|.. ...--
T Consensus 555 ~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~ 632 (759)
T KOG0211|consen 555 RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR 632 (759)
T ss_pred HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH
Confidence 456666666666666777899999999999988888764 56789999999999999999999999999872 33444
Q ss_pred HHHHHHHHhhccccc
Q 010666 193 RQLVVFLVHNFRVDN 207 (504)
Q Consensus 193 ~~fm~~LL~lF~~dr 207 (504)
+.-+..++..+.+|.
T Consensus 633 ~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 633 DEEVLPLLETLSSDQ 647 (759)
T ss_pred HHHHHHHHHHhccCc
Confidence 555555666555563
No 246
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=38.36 E-value=4.8e+02 Score=27.17 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhchhhh----hhchhHHHHHHHHhcCCCCHHHHHHHHHHHHH-Hhhch--------hhH-HHHHH
Q 010666 132 ATRIEALHWISTLLNRHRTEV----LHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC-IAKDL--------QHF-RQLVV 197 (504)
Q Consensus 132 ~TRlaaL~WL~~L~~k~P~~~----l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~-Is~~~--------~~F-~~fm~ 197 (504)
.+|-+.++.+..+....+..+ +..- +++..+++.|.+.++++|...|+.+.+ |-.++ ..| ..++.
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~-~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQK-KLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS 207 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcC-chHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence 789999987777777666544 3332 359999999999999999999999886 44322 222 35677
Q ss_pred HHHhhccccch
Q 010666 198 FLVHNFRVDNS 208 (504)
Q Consensus 198 ~LL~lF~~dr~ 208 (504)
.|..+|..+..
T Consensus 208 ~l~~Ly~~~~~ 218 (330)
T PF11707_consen 208 QLASLYSRDGE 218 (330)
T ss_pred HHHHHhcccCC
Confidence 77777776654
No 247
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=38.28 E-value=9.6e+02 Score=32.30 Aligned_cols=184 Identities=19% Similarity=0.199 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHHHHHHHhccC----CC-CchHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHhcCCcccccc--HHHH
Q 010666 6 SHEIRQQADSALWEFLQEIKNS----PS-VDYGRMAEILVQRAAS--PDEFTRLTAITWINEFVKLGGDQLVPY--YADI 76 (504)
Q Consensus 6 n~eVR~~ae~lL~~FLkeIk~~----~~-vD~~~iI~ILv~~l~s--~e~~iRltaL~WI~efl~i~~~~llpy--lp~i 76 (504)
|.++|..|.-.+-++++-++.. +. +.+-+.+=.....|.- +++.+|...+.=+. ..+.+. -|+.
T Consensus 494 ~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-------~~~~~~laQ~~~ 566 (2341)
T KOG0891|consen 494 DSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-------ERFDAQLAQPDL 566 (2341)
T ss_pred cHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-------cchhhhhcCchh
Confidence 5688888877788887776641 11 1112222222223322 34555554333332 333333 3667
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHH----HHHhcCCCCHHHHHHHHHHHHHHHhhchhhh
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSI----ATRQLSSEWEATRIEALHWISTLLNRHRTEV 152 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~v----L~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~ 152 (504)
+...+..+-|..-.+++.|....+.|-..- ...-+..+-.+ ++....+...-+...+-.=+.++....|.-+
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~----~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYN----PAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhcccccccc----HHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 777777777887788877777665333210 01112222222 2222223333334444466777777888888
Q ss_pred hhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--c-------hhhHHHHHHHHH
Q 010666 153 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--D-------LQHFRQLVVFLV 200 (504)
Q Consensus 153 l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~-------~~~F~~fm~~LL 200 (504)
.++.+.++-.+++.+.|++..|-..+++.+.++|. . +..|..|++.+.
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~ 699 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQ 699 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHH
Confidence 89999999999999999999999999999998882 1 255666666665
No 248
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=38.10 E-value=3.4e+02 Score=25.35 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=61.9
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh-hchhHHHHHHHHhcCCCCH-HHHHHHHHHHHHHh
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIA 186 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l-~~~~~lfp~LLksLSD~sd-eVv~~~L~LLa~Is 186 (504)
..+++..+.-+...+.+.+...|-+++.=+....+..+.+++ .+....+..+++-|..+++ .+...+...++.|-
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456778888888899999999999999999999999965665 8999999999999998754 55666777777775
No 249
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=38.07 E-value=24 Score=33.96 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 30 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
++...-++.|... +..++.+|..|++|++. .+++++.-|+|.++.++=-
T Consensus 68 i~p~~ALell~~~-y~~~~~Vr~yAvr~L~~---~~~e~l~~YlpQLVQaLry 116 (175)
T cd00871 68 VSPVQALSLFTPQ-YPGHPLVLQYAVRVLES---YPVETVFFYIPQIVQALRY 116 (175)
T ss_pred CCHHHHHHHhCcc-cCCCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhc
Confidence 3444444444433 44578999999999986 7889999999999887643
No 250
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.23 E-value=4e+02 Score=33.53 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc-HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy-lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
..+++.=..+++..+.-.|+-++.-|+.=+.++++-...+-+.+ +|......-+++.|++.+||.....+-..|+..++
T Consensus 36 ~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 36 VLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 34677788889999999999999999988888877766555554 89999999999999999999999999988887665
No 251
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.02 E-value=5.2e+02 Score=31.91 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhc----------CCccccccHH
Q 010666 7 HEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKL----------GGDQLVPYYA 74 (504)
Q Consensus 7 ~eVR~~ae~lL~~FLkeIk~~~-~vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i----------~~~~llpylp 74 (504)
+|=|.+|.-+|.-|.+..+... .---+..|.|-.+++.+. ++..|+ |+--.+.. .|..-..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQ----W~~icLG~LW~d~~~Arw~G~r~~A--- 643 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQ----WLCICLGRLWEDYDEARWSGRRDNA--- 643 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHH----HHHHHHHHHhhhcchhhhccccccH---
Confidence 5788999888888877765332 112356788999999885 677776 55433322 2222222
Q ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 75 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
-.-+...|+|+-+|||.+|.-+.+.|+....+. +++=.++.-..+.=+.+.+++ -.
T Consensus 644 --hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~-----fde~~~~~~~~~~l~~~~~~~-----------------E~ 699 (1387)
T KOG1517|consen 644 --HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDN-----FDEQTLVVEEEIDLDDERTSI-----------------ED 699 (1387)
T ss_pred --HHHHHHHhcCccHHHHHHHHHHHHHHhcccccc-----cchhhhhhhhhhcchhhhhhH-----------------HH
Confidence 345677899999999999999999998876541 222222222222211111111 11
Q ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhccccchhhhhh
Q 010666 155 FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 155 ~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
.+..-.-.++..++|.++-|......-++... .+..+|..++. .....+...||++
T Consensus 700 ~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~---n~~~~~~~~lE~~ 756 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG---NYLLPESSSLEKS 756 (1387)
T ss_pred HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh---hhcccchhhhhcc
Confidence 11111246788899999999888777788887 34455554444 5555555556654
No 252
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=36.07 E-value=1.6e+02 Score=26.11 Aligned_cols=84 Identities=23% Similarity=0.241 Sum_probs=58.7
Q ss_pred HHHHHhccC--CCCchHHHHHHHHHHc---CCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccC----C--
Q 010666 19 EFLQEIKNS--PSVDYGRMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD----K-- 87 (504)
Q Consensus 19 ~FLkeIk~~--~~vD~~~iI~ILv~~l---~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd----~-- 87 (504)
..+.||... ...++..|+++|..|+ ..++.-.-+-++.-|.-++.-++..++..+-+-...|-.+-.. +
T Consensus 22 ~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g 101 (125)
T PF01417_consen 22 KLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKG 101 (125)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTS
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCC
Confidence 344555421 1367999999999999 4445667778999999999999998888887666655544332 2
Q ss_pred ---chHHHHHHHHHHHHH
Q 010666 88 ---EEKIRVVARETNEEL 102 (504)
Q Consensus 88 ---~~eIR~~A~~~N~~L 102 (504)
...||+.|.++...|
T Consensus 102 ~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 102 KDQGQNVREKAKEILELL 119 (125)
T ss_dssp TBHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 134999998887654
No 253
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=35.60 E-value=1.2e+02 Score=32.15 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=10.5
Q ss_pred hhchhHHHHHHHHhc
Q 010666 153 LHFLNDIFDTLLKAL 167 (504)
Q Consensus 153 l~~~~~lfp~LLksL 167 (504)
-+|.+.+.|.+|.||
T Consensus 272 dPY~hqlmPSilTcl 286 (450)
T COG5095 272 DPYLHQLMPSILTCL 286 (450)
T ss_pred cHHHHHHHHHHHHHH
Confidence 367777777777664
No 254
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.50 E-value=5e+02 Score=28.44 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=111.8
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccC-CchHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 010666 37 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDV 115 (504)
Q Consensus 37 ~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd-~~~eIR~~A~~~N~~Ll~li~~~~~~~d~ 115 (504)
+.|+..+-+..-+.|-.++.-|..+........----.+-|..+.+ |+. .+..+|.-|..+...+-..-.. ...+=-
T Consensus 129 ~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltr-LakskdirvqrnatgaLlnmThs~En-Rr~LV~ 206 (550)
T KOG4224|consen 129 DLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSREN-RRVLVH 206 (550)
T ss_pred HHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhh-hhhhhc
Confidence 3455555556666777777777777776443322223444555555 443 3444555555554333322111 011111
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hhchhhhhh-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHH
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTLL-NRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR 193 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~-~k~P~~~l~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~ 193 (504)
...+.+|+.-+.+.+..+|.-|..=|..+- .....+++. --+++.|+|...+-|+++.|--.+---|..++++..|-.
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 234678888888999888887776555442 333344554 445799999999999999999999888899998888877
Q ss_pred HHHH-----HHHhhcccc-chhhhhhHHHHHHHHhhc
Q 010666 194 QLVV-----FLVHNFRVD-NSLLEKRGALIIRRLCVL 224 (504)
Q Consensus 194 ~fm~-----~LL~lF~~d-r~LLe~Rg~lIIRqLC~~ 224 (504)
.++. .+++++..+ -++.-. ..+-||++...
T Consensus 287 eiv~ag~lP~lv~Llqs~~~plila-sVaCIrnisih 322 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSPMGPLILA-SVACIRNISIH 322 (550)
T ss_pred HHHhcCCchHHHHHHhCcchhHHHH-HHHHHhhcccc
Confidence 6654 345666544 122211 24567887765
No 255
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=35.06 E-value=53 Score=23.14 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=24.7
Q ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHH
Q 010666 75 DILGAILPCISDKEEKIRVVARETNEELR 103 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll 103 (504)
+.+..+..+|.+++++|++.|..+...+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56788888999999999999998877653
No 256
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=34.46 E-value=17 Score=35.08 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 30 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
++...-++.|-.+. .++.+|.+|++||.. .+++++.-|+|.++.++=-
T Consensus 75 ~~p~~AL~LL~~~f--~~~~VR~yAv~~L~~---~~d~~l~~yLpQLVQaLr~ 122 (184)
T PF00613_consen 75 ISPEDALELLSPNF--PDPFVRQYAVRRLES---LSDEELLFYLPQLVQALRY 122 (184)
T ss_dssp TTHHHHHHCTSTT-----HHHHHHHHHHHCT---S-HHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHhhc--cHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHhee
Confidence 44444444444333 348999999999976 7889999999999999843
No 257
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=34.27 E-value=1.2e+02 Score=26.85 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHH-HHHHHHhcCCccccccHHHHHHHHccccc
Q 010666 9 IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGDQLVPYYADILGAILPCIS 85 (504)
Q Consensus 9 VR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~-WI~efl~i~~~~llpylp~iL~~lLp~Ls 85 (504)
-|..|-..++++++-......--.|+|...|..-+. .|+.|..+++ |-.-+-.+.++++-|.+..++.+++|...
T Consensus 31 ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 31 EKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Confidence 367777788888885443333447888889988886 4557777776 88888889999999999999999998754
No 258
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.01 E-value=1.1e+02 Score=36.17 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=97.5
Q ss_pred HHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC--CCCChHhHHHHHHHhcCCCCHHHH
Q 010666 57 WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA--DGFDVGPILSIATRQLSSEWEATR 134 (504)
Q Consensus 57 WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~--~~~d~~~iv~vL~~~L~s~~e~TR 134 (504)
||.+..-.. ++.+.-++..+..-+..||..|.+....+|+--...- --.-.+.-|..|..-+.++.|..|
T Consensus 112 ~iae~fik~--------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR 183 (970)
T KOG0946|consen 112 WIAEQFIKN--------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIR 183 (970)
T ss_pred HHHHHHHcC--------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhc
Confidence 777655443 5677888888999999999999999888876432100 001122334556667789999999
Q ss_pred HHHHHHHHHHHhhchh--hhhhchhHHHHHHHHhcCCCC----HHHHHHHHHHHHHHh----hchhhHH--HHHHHHHhh
Q 010666 135 IEALHWISTLLNRHRT--EVLHFLNDIFDTLLKALSDPS----DEVVLLVLEVHACIA----KDLQHFR--QLVVFLVHN 202 (504)
Q Consensus 135 laaL~WL~~L~~k~P~--~~l~~~~~lfp~LLksLSD~s----deVv~~~L~LLa~Is----~~~~~F~--~fm~~LL~l 202 (504)
=+|+=.|..|.+-.|. |+.. ++++|..|+.-+..+. -=||.-+|-++-.+- +|+.+|+ .++..|.++
T Consensus 184 Ne~iLlL~eL~k~n~~IQKlVA-FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 184 NEAILLLSELVKDNSSIQKLVA-FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred hhHHHHHHHHHccCchHHHHHH-HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 9999999999998874 4444 5677787877776543 257888888777765 6889986 566666644
Q ss_pred cc
Q 010666 203 FR 204 (504)
Q Consensus 203 F~ 204 (504)
++
T Consensus 263 L~ 264 (970)
T KOG0946|consen 263 LS 264 (970)
T ss_pred cC
Confidence 43
No 259
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=33.59 E-value=31 Score=33.04 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 47 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 47 e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
++.+|..||+||.. .+++++.-|+|.++.++=-
T Consensus 84 d~~VR~yAV~~L~~---~~ddeL~~yLpQLVQaLky 116 (169)
T cd00869 84 DQEVRAHAVQWLAR---LSNDELLDYLPQLVQALKF 116 (169)
T ss_pred ChHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHc
Confidence 47899999999886 6889999999999988643
No 260
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.53 E-value=3.1e+02 Score=23.61 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-hHHHH-HHHH----hc--CCCCHHHHHHHHHHHH
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFD-TLLK----AL--SDPSDEVVLLVLEVHA 183 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~-~~lfp-~LLk----sL--SD~sdeVv~~~L~LLa 183 (504)
......++..|..++.+.+....+-||.=|..+....+..+...+ ...|. .+++ .. .|.+..|..++++++.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 355788999999999999999999999999999999998887644 33333 3333 11 2457899999999987
Q ss_pred HHh
Q 010666 184 CIA 186 (504)
Q Consensus 184 ~Is 186 (504)
..+
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 653
No 261
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=32.22 E-value=4.7e+02 Score=28.11 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=75.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh------hchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh--------
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIA------KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------- 227 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is------~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a-------- 227 (504)
+..-+..+++.+ ++..+..+..|- ..+.-++.+..++.+.+.... |+++.+-|..+.|.
T Consensus 51 ~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~------~~l~L~vLsnLfn~~d~~~~aR 123 (378)
T KOG2753|consen 51 ACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKT------ASLRLQVLSNLFNGVDKPTPAR 123 (378)
T ss_pred HhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCC------cccHHHHHHHHHhccCCCchHH
Confidence 333333444444 455554444433 123456777777776665433 55666666555544
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cCCcchhHHHHHHHHHhccCh----H------
Q 010666 228 ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKS-LVNPAGKDLFVSLYASWCHSP----M------ 296 (504)
Q Consensus 228 E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~-l~~~~~~~lF~~L~~sWchn~----v------ 296 (504)
..||..+-+.-.+..= |.=-.+++..+++.|++. .+.++.+.||..+++.---|- -
T Consensus 124 ~~Vy~~lv~la~~~~~-------------~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~ 190 (378)
T KOG2753|consen 124 YQVYMSLVTLAASCKL-------------IEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTE 190 (378)
T ss_pred HHHHHHHHHHHhhcce-------------eeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 4677666554322111 111267888888888864 345566788888877654443 1
Q ss_pred --HHHHHHHHHhhHHHHHHHHHHhh
Q 010666 297 --AIISLCLLAQTYHHASAVIQSLV 319 (504)
Q Consensus 297 --s~lsLcLl~q~Ye~A~~li~~~~ 319 (504)
+|++-==.++|-|-|-..|..+.
T Consensus 191 lLgtyt~dnas~AredA~rcV~~av 215 (378)
T KOG2753|consen 191 LLGTYTEDNASEAREDAMRCVVEAV 215 (378)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHH
Confidence 11111113667777777777763
No 262
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=32.17 E-value=6.8e+02 Score=27.08 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCChHH----HHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 32 YGRMAEILVQRAASPDEFT----RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~i----RltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
++-++.-|-..-+++|+.+ +.....|+--|.--++.....= +.....+-+..+.+.+
T Consensus 145 lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~----l~~~~~~~~~~~~~l~--------------- 205 (373)
T PF14911_consen 145 LPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVAR----LSTLLSAFTPRNEELR--------------- 205 (373)
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCcccccc----ccccccchhhhhhHHH---------------
Q ss_pred CCCCCCChHhHHHHHHHhcC----CCCHHHHHHHHHHHHHHHhh----chhhhhhchhHHHHHHHHh--cCCCCHHHHHH
Q 010666 108 DPADGFDVGPILSIATRQLS----SEWEATRIEALHWISTLLNR----HRTEVLHFLNDIFDTLLKA--LSDPSDEVVLL 177 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L~----s~~e~TRlaaL~WL~~L~~k----~P~~~l~~~~~lfp~LLks--LSD~sdeVv~~ 177 (504)
.-+++++..++. +.-...=-.+|.||.+|.+. .-.+.....+-++|.+|++ +.|+.+-|...
T Consensus 206 --------~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~ 277 (373)
T PF14911_consen 206 --------KFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKL 277 (373)
T ss_pred --------HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHH
Q ss_pred HHHHHHHHh-----hchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHH
Q 010666 178 VLEVHACIA-----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQ 252 (504)
Q Consensus 178 ~L~LLa~Is-----~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq 252 (504)
+++++..|- ..+..-+..+.+.+.-|-.+.--..+.. +|+.+..+- +-|.++|..++-
T Consensus 278 a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~---------------~f~~l~~vA--~l~p~lV~~Lip 340 (373)
T PF14911_consen 278 ATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQ---------------YFQFLEKVA--ELDPQLVISLIP 340 (373)
T ss_pred HHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHH---------------HHHHHHHHH--HhCHHHHHHHHH
Q ss_pred HHHHHhcCch
Q 010666 253 ALNLILLTSS 262 (504)
Q Consensus 253 ~Ln~iLLTs~ 262 (504)
++...+.-++
T Consensus 341 ~i~q~l~~~E 350 (373)
T PF14911_consen 341 TIRQSLKDSE 350 (373)
T ss_pred HHHHHHHHHH
No 263
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=31.23 E-value=6.5e+02 Score=26.55 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=21.0
Q ss_pred HHHHHHHhhchhhhhhchhHHHHHHHHhcC
Q 010666 139 HWISTLLNRHRTEVLHFLNDIFDTLLKALS 168 (504)
Q Consensus 139 ~WL~~L~~k~P~~~l~~~~~lfp~LLksLS 168 (504)
+=+.-|+..--=.+.+|.+.++|.+|.|+-
T Consensus 239 ~~v~ALl~N~~l~le~Ylh~Lip~vltclv 268 (343)
T cd08050 239 RMVRALLDNPNLHLEPYLHQLIPSVLTCLV 268 (343)
T ss_pred HHHHHHhcCCCCchHHhHHHHHHHHHHHhh
Confidence 444444444444667899999999999873
No 264
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.40 E-value=3.4e+02 Score=31.98 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=67.1
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCCCC-----ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 87 KEEKIRVVARETNEELRAIKADPADGF-----DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 87 ~~~eIR~~A~~~N~~Ll~li~~~~~~~-----d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
+.-..|-+..++...+..-....+... -+...+..|.++|.+.++-+|-.||.-+.-+.+... +.-.--+.+..
T Consensus 311 es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s-k~~~~r~ev~~ 389 (1128)
T COG5098 311 ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS-KTVGRRHEVIR 389 (1128)
T ss_pred cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc-cccchHHHHHH
Confidence 344455555555554443333322222 245677788999999999999999988887776542 22222334566
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.+..+|-|.+--|..++..+.+++-
T Consensus 390 lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 390 LVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 7789999999999999999998853
No 265
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.32 E-value=8.1e+02 Score=27.39 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHhccCC--------CCchHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhc
Q 010666 15 SALWEFLQEIKNSP--------SVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKL 64 (504)
Q Consensus 15 ~lL~~FLkeIk~~~--------~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl~i 64 (504)
...+.+||-+.+.+ ..|..++.+.+..||..-+ +........|+..++.-
T Consensus 134 ~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 134 HSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred HHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 34455555555432 2366777777888876433 22233334455555443
No 266
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=30.08 E-value=5.2e+02 Score=25.10 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=49.1
Q ss_pred cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchh
Q 010666 72 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 72 ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
.++.+...-+++++-+.|++|+.|...-... ..+-.+.+..|...| .+..-+.|+.|++++.....+...
T Consensus 9 ~m~~y~k~~~~f~Gv~~P~~R~lak~~~~~~---------~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~ 79 (208)
T cd07064 9 AMKAYMKNQFPFYGIKTPERRALSKPFLKES---------KLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTP 79 (208)
T ss_pred HHHHHHhcCCccCCCChHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCH
Confidence 3455556667899999999999999886431 111122333444444 444556899999999987666644
Q ss_pred hhhhchhH
Q 010666 151 EVLHFLND 158 (504)
Q Consensus 151 ~~l~~~~~ 158 (504)
.-++.+..
T Consensus 80 ~~~~~~~~ 87 (208)
T cd07064 80 EDLPLLEE 87 (208)
T ss_pred HHHHHHHH
Confidence 44443333
No 267
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=29.48 E-value=9.9e+02 Score=28.13 Aligned_cols=205 Identities=19% Similarity=0.186 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHH---HHHhcc-CCCCchHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHH-hcC------------C
Q 010666 6 SHEIRQQADSALWEF---LQEIKN-SPSVDYGRMAEILVQRAASPDE--FTRLTAITWINEFV-KLG------------G 66 (504)
Q Consensus 6 n~eVR~~ae~lL~~F---LkeIk~-~~~vD~~~iI~ILv~~l~s~e~--~iRltaL~WI~efl-~i~------------~ 66 (504)
+.+||+.-..+|+++ |-+|-+ .=.-+.|.+||=|+.--+.+-+ +.-+.+++-++|=+ ..+ .
T Consensus 104 dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~Lk 183 (1053)
T COG5101 104 DDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLK 183 (1053)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHH
Confidence 456777777777665 444432 2234677888888776554422 33455555555432 222 2
Q ss_pred ccccccHHHHHHHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCCh---HhHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010666 67 DQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATRIEALHWIS 142 (504)
Q Consensus 67 ~~llpylp~iL~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~---~~iv~vL~~~L~s~~e~TRlaaL~WL~ 142 (504)
..|-.-+|.|.+-....|..+. +..-++. .+.|++.+.- -..|| ..+++.+..+|.+. +.||.++|.-|.
T Consensus 184 Nqm~~EF~qIF~lc~qiLE~~~~~SLi~AT---Lesllrfl~w--iPl~yIfeTnIieLv~~~f~s~-pd~r~~tl~CLt 257 (1053)
T COG5101 184 NQMKIEFPQIFGLCKQILEYSRDESLIEAT---LESLLRFLEW--IPLDYIFETNIIELVLEHFNSM-PDTRVATLSCLT 257 (1053)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCChHHHHHH---HHHHHHHHhh--CchhHHHHHHHHHHHHHHhccC-CchhHHHHHHHH
Confidence 3444557888888888777654 3344444 4445544432 12333 47788888888554 569999999999
Q ss_pred HHHhhch--hh---hhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHH-HHHHHHHhhccccchhhhhhHHH
Q 010666 143 TLLNRHR--TE---VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR-QLVVFLVHNFRVDNSLLEKRGAL 216 (504)
Q Consensus 143 ~L~~k~P--~~---~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~-~fm~~LL~lF~~dr~LLe~Rg~l 216 (504)
++.+... .+ .-..+.-.|..++-.-....--+-..--++-+....|++.|- +...+|-.+|.....+||.|-..
T Consensus 258 Ei~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~ 337 (1053)
T COG5101 258 EIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMA 337 (1053)
T ss_pred HHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcChhHH
Confidence 8877652 11 111111112211111100000011111123333334565553 44455566777778888877544
No 268
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.02 E-value=6.4e+02 Score=25.74 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccC------------C---C-CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNS------------P---S-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 67 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~------------~---~-vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~ 67 (504)
|-..|--.+- .+|++||..+.-. | . .+|+.+-+++..=+.+++.. -..+.-+..+..++..
T Consensus 19 ~~E~EF~~aL-~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~ 95 (262)
T PF14225_consen 19 IHEHEFLEAL-SLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDD 95 (262)
T ss_pred CcHHHHHHHH-HHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcH--HHHHHHHHHHhcCCCc
Confidence 3344455544 5899998887521 1 3 57888888888888777632 3345556667777665
Q ss_pred ccccc----HHHHHHHHcccccC----Cc-----hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHH
Q 010666 68 QLVPY----YADILGAILPCISD----KE-----EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 134 (504)
Q Consensus 68 ~llpy----lp~iL~~lLp~Lsd----~~-----~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TR 134 (504)
.++.- ++-.+-+.+|.+-+ +. +++++.| ..+.+.... ...-++..++......=..
T Consensus 96 ~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A----~~La~~a~~-~~~~~La~il~~ya~~~fr------ 164 (262)
T PF14225_consen 96 PLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA----EALAQVAEA-QGLPNLARILSSYAKGRFR------ 164 (262)
T ss_pred cccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH----HHHHHHHHh-CCCccHHHHHHHHHhcCCC------
Confidence 55532 34455555555543 33 3444444 444444432 2333455555543333222
Q ss_pred HHHHHHHHHHHhhchhhhh-hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 135 IEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 135 laaL~WL~~L~~k~P~~~l-~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
..=+|+.....--.+.++ +|.-.++.-|+.-|...-+.+....|++|..+-
T Consensus 165 -~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll 216 (262)
T PF14225_consen 165 -DKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLL 216 (262)
T ss_pred -CHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 233677777777666666 445567777888888888888888888887764
No 269
>PF14961 BROMI: Broad-minded protein
Probab=29.02 E-value=4.8e+02 Score=32.53 Aligned_cols=92 Identities=7% Similarity=0.040 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHhcCCcccc--ccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCC
Q 010666 33 GRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLV--PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 109 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~-~iRltaL~WI~efl~i~~~~ll--pylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~ 109 (504)
.+=.+.++++++...| ++|+-|+ +.+.+.++.+++ .+-|.+-..+.-.|+|++++|.+.+-++-..++..-+-.
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAl---q~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEAL---QILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHH---HHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 4455888999987764 7899886 578899999998 478999999999999999999999888877766543211
Q ss_pred CCCCChHhHHHHHHHhcC
Q 010666 110 ADGFDVGPILSIATRQLS 127 (504)
Q Consensus 110 ~~~~d~~~iv~vL~~~L~ 127 (504)
-..==|...++.|..+|.
T Consensus 237 ~trEiYtsL~~~l~~~Fl 254 (1296)
T PF14961_consen 237 MTREIYTSLANHLESYFL 254 (1296)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 000015666777766664
No 270
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.97 E-value=2.4e+02 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=54.7
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHH--HhcCC---------CCHHHHHHHHHH
Q 010666 113 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL--KALSD---------PSDEVVLLVLEV 181 (504)
Q Consensus 113 ~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LL--ksLSD---------~sdeVv~~~L~L 181 (504)
-++..+++.|...|.+.+..++.-||+=|.++.++.+..+....-.-...+- ..... +...|...|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 3467899999999999999999999999999999999887655544333221 22222 234788888888
Q ss_pred HHHHhh
Q 010666 182 HACIAK 187 (504)
Q Consensus 182 La~Is~ 187 (504)
++-|-+
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 877743
No 271
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=28.25 E-value=1.6e+02 Score=31.12 Aligned_cols=91 Identities=13% Similarity=0.227 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 010666 69 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 148 (504)
Q Consensus 69 llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~ 148 (504)
|.+|.++.|.-=|..|++....|+.++.=+-.. .-+.+.||.+=...|.......|+.=|==.....+.+
T Consensus 1 m~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~h----------kk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQns 70 (325)
T KOG2669|consen 1 MSAFSEEALEKKLAELSNTQESIQTLSLWLIHH----------KKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNS 70 (325)
T ss_pred CCcccHHHHHHHHHhccchHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHh
Confidence 457788888888888888888888777666432 3456888988888888887888888666667777888
Q ss_pred hhhhhhchhHHHHHHHHhcCC
Q 010666 149 RTEVLHFLNDIFDTLLKALSD 169 (504)
Q Consensus 149 P~~~l~~~~~lfp~LLksLSD 169 (504)
.++.-.|.+..+|++++.+.|
T Consensus 71 krk~~ef~~ef~~v~~~a~~~ 91 (325)
T KOG2669|consen 71 KRKGPEFVDEFWPVVLKAFAH 91 (325)
T ss_pred hhcCchhHHHHHHHHHHHHHH
Confidence 788888888999999888775
No 272
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=4.1e+02 Score=33.93 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=79.7
Q ss_pred HHHHHHhcCCccccccHHHHHHHH-cccccCCc---hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHH-hcCCCCH
Q 010666 57 WINEFVKLGGDQLVPYYADILGAI-LPCISDKE---EKIRVVARETNEELRAIKADPADGFDVGPILSIATR-QLSSEWE 131 (504)
Q Consensus 57 WI~efl~i~~~~llpylp~iL~~l-Lp~Lsd~~---~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~-~L~s~~e 131 (504)
|+.++++. ...|+|++.... .||+++.. .++..-+..+..++|... ..+..-...++.++.. -+.+.+.
T Consensus 1468 ~f~~~~~~----~~kyl~~~~~~~~~~~~~~~~y~~~d~a~~~a~~~~~lm~~~--~~~~~l~~e~l~~l~~~~~~~~tw 1541 (1710)
T KOG1851|consen 1468 WFSTLVKL----LPKYLPDLIADDLYPCLGENTYRDVDLAKNSALLCHSLMSLS--WIGHHLQPEFLRDLKMLTADSSTW 1541 (1710)
T ss_pred hHHHHHhc----chhhhhhhhcccccccccccccccchHHHHHHHHHHHHHHhh--ccchhhHHHHHHHHHHHhcccchH
Confidence 44444444 355666665544 48888753 344333333334444433 2233445677888874 4457788
Q ss_pred HHHHHHHHHHHHHHh--hchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 132 ATRIEALHWISTLLN--RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 132 ~TRlaaL~WL~~L~~--k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
..|.++|..+.+..= ..+ .--...++++-.+-+.|+|..-+|...+-.+|+-+-
T Consensus 1542 ~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1542 RVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 899999999887543 333 122456688889999999998899999999998875
No 273
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=27.77 E-value=1.6e+02 Score=33.12 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhh-hchhHHHH---------HHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHH
Q 010666 128 SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFD---------TLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV 197 (504)
Q Consensus 128 s~~e~TRlaaL~WL~~L~~k~P~~~l-~~~~~lfp---------~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~ 197 (504)
+....+|+.||.-+..+.+.-|++.+ .|++.+|| .++-+|.|++......+|||+++|-.+.+.|-....
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44456799999999999999998876 57666665 244579999999999999999999877766665555
Q ss_pred HH
Q 010666 198 FL 199 (504)
Q Consensus 198 ~L 199 (504)
++
T Consensus 87 ~~ 88 (728)
T KOG4535|consen 87 DT 88 (728)
T ss_pred cc
Confidence 44
No 274
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.60 E-value=5.9e+02 Score=25.29 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCch--HHHHHHHHHHHHH
Q 010666 32 YGRMAEILVQRAASP-------DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE--KIRVVARETNEEL 102 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~-------e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~--eIR~~A~~~N~~L 102 (504)
+..|-.+|..||-+. +..+=..|+.=..+++.......=+-++++|.++-+.-...+. ++-......-..+
T Consensus 69 l~dI~kvly~r~i~~~~~~~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f 148 (219)
T PF14677_consen 69 LCDITKVLYWRCISRLSEVEDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQF 148 (219)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhcCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHH
Confidence 566777777777432 2334445556666666665444445577788877666665554 6777777777777
Q ss_pred HHhhcC----CCCC---CC---hHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhh
Q 010666 103 RAIKAD----PADG---FD---VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEV 152 (504)
Q Consensus 103 l~li~~----~~~~---~d---~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~ 152 (504)
++.+.+ ..+. .. +-.++..|..++. ++...+ .++.|+..+-....-+-
T Consensus 149 ~r~~~~~~s~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~~--q~~~W~~~~ck~~~l~d 207 (219)
T PF14677_consen 149 QRELENFLSSEEEDFNSKEAVLLVNILSQLSDHLDPSSDQFT--QMLSWTLKFCKENSLED 207 (219)
T ss_dssp HHHHHHHHHS--SS--SHHHHHHHHHHHHHTTSS-SSSSHHH--HHHHHHHHHHHS---S-
T ss_pred HHHHhhccccccccccchhHHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHHHHhcCCCc
Confidence 777731 1222 22 3344555666665 333334 58999999998885443
No 275
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=27.34 E-value=1.4e+02 Score=32.22 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHcccccCCchHHHHHHHHH--HHHHHHhhcCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARET--NEELRAIKADP 109 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i-~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~--N~~Ll~li~~~ 109 (504)
..++.-|+.+--.+++..+...+.=|.+++.. ++.++......+...+-.|++.++..|-+.|..+ |..++.++.+.
T Consensus 254 ~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~ 333 (409)
T PF01603_consen 254 EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN 333 (409)
T ss_dssp HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC
Confidence 33555556666666677777888888888884 5678888999999999999999999888888777 77888888663
Q ss_pred CCCCChHhHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 110 ADGFDVGPILSIATRQLS-----SEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 110 ~~~~d~~~iv~vL~~~L~-----s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
-..++.++...+. +=+..+|-.|..=+.+|.+..|+-+.
T Consensus 334 -----~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 334 -----SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp -----HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence 2445555555543 22677888888888888888876544
No 276
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=27.32 E-value=7.7e+02 Score=27.56 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCccccccHHHHHHHHcccccCC---chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC--CC
Q 010666 55 ITWINEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SE 129 (504)
Q Consensus 55 L~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~---~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~--s~ 129 (504)
+.+|+.+=+++ .|..+..+.|.+-+. ...+|.+|..+...+. ...-..+.+++..-+. .+
T Consensus 508 ~~~LkaLgN~g-------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~--------~~~~~~v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 508 IVYLKALGNLG-------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA--------KHCPEKVREILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG--------GT-HHHHHHHHHHHHH-TTS
T ss_pred HHHHHHhhccC-------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHh--------hcCcHHHHHHHHHHhcCCCC
Confidence 34555555553 256777777877776 4677777776654321 1223466667666665 44
Q ss_pred CHHHHHHHHHHHHHHHhhchh
Q 010666 130 WEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 130 ~e~TRlaaL~WL~~L~~k~P~ 150 (504)
+.+.|+||+ ..|.+..|.
T Consensus 573 ~~EvRiaA~---~~lm~~~P~ 590 (618)
T PF01347_consen 573 DPEVRIAAY---LILMRCNPS 590 (618)
T ss_dssp -HHHHHHHH---HHHHHT---
T ss_pred ChhHHHHHH---HHHHhcCCC
Confidence 566788886 344444443
No 277
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.85 E-value=6.4e+02 Score=25.08 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=82.9
Q ss_pred CCCCcHHHHHHHHHHHHHHH----HHhccCCCC-----chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc--
Q 010666 2 LSDSSHEIRQQADSALWEFL----QEIKNSPSV-----DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-- 70 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FL----keIk~~~~v-----D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll-- 70 (504)
|.|+++.|-..|..+....- +.+..++.. .+..|-+-++....+.++-+|..+++.+..++.+.-..--
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 68899988887777766553 334222111 1566777788888989999999999999999888422111
Q ss_pred cc-HHHHHHHHcccccCCc-----hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 71 PY-YADILGAILPCISDKE-----EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 144 (504)
Q Consensus 71 py-lp~iL~~lLp~Lsd~~-----~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L 144 (504)
+. ...=-+.=+-.+..++ ..+...|....+.|+..+.... -....=.+++++|..+
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~------------------i~~~~~~a~insL~~I 143 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH------------------ISSPLLTAIINSLSNI 143 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--------------------HHHHHHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc------------------cchHHHHHHHHHHHHH
Confidence 00 0000001111111111 2455555555555555554422 1244456888999999
Q ss_pred HhhchhhhhhchhHHHHHHHHhcC
Q 010666 145 LNRHRTEVLHFLNDIFDTLLKALS 168 (504)
Q Consensus 145 ~~k~P~~~l~~~~~lfp~LLksLS 168 (504)
.++.|. |.+.++++|+..=.
T Consensus 144 ak~RP~----~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 144 AKQRPQ----FMSRILPALLSFNP 163 (239)
T ss_dssp HHHSGG----GHHHHHHHHHHHHH
T ss_pred HHHhhH----HHHHHHHHHHhcCc
Confidence 999984 45677888776533
No 278
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=26.74 E-value=1.3e+03 Score=28.60 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHh
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~l 105 (504)
.+..||-+..++..+.+++|.-.+.-|..+++- +++.|=-.+.--.+-.|-|.+++||.-|.=+-.++++.
T Consensus 1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 366788889999999999999988888887765 34444444444444556689999999999988877754
No 279
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=26.34 E-value=4.1e+02 Score=33.13 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHH
Q 010666 46 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 92 (504)
Q Consensus 46 ~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR 92 (504)
+|.++|.-||.||. .++.++++.|+|.++.++=--+--..+-+|
T Consensus 902 PDqeVR~~AVqwi~---~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~ 945 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIA---RLSNDELLDYLPQLVQALKFELYLKSALVQ 945 (1639)
T ss_pred CcHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 46899999999986 568899999999999998655544444444
No 280
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.32 E-value=6.7e+02 Score=31.94 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccC-CchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd-~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
.+++.-|+.|+++..+.---+|+.=+.++....+..+.|| +.++.++|-++.+ +...||+...-.-.--+.- ...+.
T Consensus 472 qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~-~~~~s 549 (1426)
T PF14631_consen 472 QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD-SSSSS 549 (1426)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH-SS---
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-cccch
Confidence 5789999999877765444577887888888888888888 7899999999988 5678998866555422222 21111
Q ss_pred CCChHhHHHHHHHhcCCCCHHH-HHHHHHHHHHHHh
Q 010666 112 GFDVGPILSIATRQLSSEWEAT-RIEALHWISTLLN 146 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~T-RlaaL~WL~~L~~ 146 (504)
.+ -+++--++.+|+.+.+... |+-.+.=+.++..
T Consensus 550 ~i-~del~ivIRKQLss~~~~~K~~GIIGav~~i~~ 584 (1426)
T PF14631_consen 550 SI-QDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKH 584 (1426)
T ss_dssp HH-HHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Confidence 11 2344446889998888776 4444444444433
No 281
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=25.41 E-value=3.2e+02 Score=23.05 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=53.7
Q ss_pred chhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHH
Q 010666 207 NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVS 286 (504)
Q Consensus 207 r~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~ 286 (504)
+.+|+.....+.+ .+.+..|+..+.++| |..+..+++..=.+.-.....+.|+.+
T Consensus 5 r~lL~~~~~~l~~----~l~p~~il~~l~~~L---------------------~~~~~e~I~a~~~~~g~~~aa~~Ll~~ 59 (88)
T cd08812 5 RRLLERLQPLLKD----TIIPRDILDHLPECL---------------------TDEDKEQILAEERNKGNIAAAEELLDR 59 (88)
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHc---------------------CHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3444444333333 356666776666654 555666666654321122356889999
Q ss_pred HHHHhccChHHHHHHHHHHhhHHHHHH
Q 010666 287 LYASWCHSPMAIISLCLLAQTYHHASA 313 (504)
Q Consensus 287 L~~sWchn~vs~lsLcLl~q~Ye~A~~ 313 (504)
|-+||-=|...+|--||-.-.|.+.+.
T Consensus 60 L~~~r~~~wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 60 LERCDKPGWFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred HHHhccCCcHHHHHHHHHHcCCccHHH
Confidence 999999999999999999888876654
No 282
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.27 E-value=3.3e+02 Score=34.61 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=64.2
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+.++.+-+.....+++...|+.|+.=+..++.+-.+..+.+.+.++|.|=+-+.|..++|-..+-.++.++-
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e 1610 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLE 1610 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 777777777777788899999999999999999999999999999999999999999999988877776664
No 283
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=24.96 E-value=8.6e+02 Score=30.01 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=68.7
Q ss_pred HHHHHccccc-CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 76 ILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 76 iL~~lLp~Ls-d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
++--|+.-++ |....+|+.|+++..+.+..... .--+..++-+|..++.+.-+..|-++++=+-.+....|.-+ .
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~---~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-~ 652 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE---ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-S 652 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccch---hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh-h
Confidence 3444555555 44445666666665554444322 12244557788888889999999999999988888888766 4
Q ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 155 FLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 155 ~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
....-+-+|..-+.|....|..+++.++-+.
T Consensus 653 ~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 653 LSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4445555666666777777777777654443
No 284
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=24.89 E-value=9.4e+02 Score=26.36 Aligned_cols=203 Identities=12% Similarity=0.141 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCCccccccHHHHHHHHcccccC-----CchHHHHHHHHHHHHHHHhhcCCC-C-CCChH-hHHHHHHHhc
Q 010666 55 ITWINEFVKLGGDQLVPYYADILGAILPCISD-----KEEKIRVVARETNEELRAIKADPA-D-GFDVG-PILSIATRQL 126 (504)
Q Consensus 55 L~WI~efl~i~~~~llpylp~iL~~lLp~Lsd-----~~~eIR~~A~~~N~~Ll~li~~~~-~-~~d~~-~iv~vL~~~L 126 (504)
++=|...+.+.++.+.|+.+.++..+..++.- ++|.----.=++-..+.+.+.+.. + .-.++ .+..++..-|
T Consensus 47 Mk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~IL 126 (435)
T PF03378_consen 47 MKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEIL 126 (435)
T ss_dssp HHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 33444556677777888877777766655531 223322222223333333332210 0 01122 2223344444
Q ss_pred CCCCHHHHHHHHHHHHHHHhhch-hhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHH--HHHHHHHhh
Q 010666 127 SSEWEATRIEALHWISTLLNRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFR--QLVVFLVHN 202 (504)
Q Consensus 127 ~s~~e~TRlaaL~WL~~L~~k~P-~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~--~fm~~LL~l 202 (504)
..+-.+=-==++.=+..|++.+| ..+-+..-.+||.||.---.+...-|--...+|..+- .+..++. .-+..++..
T Consensus 127 q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgv 206 (435)
T PF03378_consen 127 QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGV 206 (435)
T ss_dssp HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHH
Confidence 33322222234556667777787 5666677778887774333333222233334444433 1222221 222333333
Q ss_pred cccc--chhhhhhHHHHHHHHhhcCChH-------HHHHHHHHhhccccChHHHHHHHHHHHHH
Q 010666 203 FRVD--NSLLEKRGALIIRRLCVLLDAE-------RVYRELSTILEGEADLDFACTMVQALNLI 257 (504)
Q Consensus 203 F~~d--r~LLe~Rg~lIIRqLC~~L~aE-------~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~i 257 (504)
|.+= .+.-+.-|-.++.-+-..++++ .|+..+-.-|....--+|+..+|..+...
T Consensus 207 FQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 207 FQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 3210 1112344666777777777765 35555555555556667888888777644
No 285
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=24.88 E-value=7.5e+02 Score=25.21 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHhhcccc--chhhhhhH--HH-HHHHHhhcC
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA-----KDLQHFRQLVVFLVHNFRVD--NSLLEKRG--AL-IIRRLCVLL 225 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-----~~~~~F~~fm~~LL~lF~~d--r~LLe~Rg--~l-IIRqLC~~L 225 (504)
....+..+...+.+. +++..+....+.... .+...+..++..=++-|..+ ..+++... .+ +||-++..+
T Consensus 274 i~~~l~~~~~~l~~~-~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~l~~~i~~~v~~dL~~IrinGall 352 (367)
T PF04286_consen 274 ISELLEELIDKLKED-PELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDDEELEELIESKVGKDLQWIRINGALL 352 (367)
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhHhhhhhhHHH
Confidence 333444444444443 555544444444333 22345555555556655544 22222211 11 555555555
Q ss_pred Ch
Q 010666 226 DA 227 (504)
Q Consensus 226 ~a 227 (504)
|+
T Consensus 353 G~ 354 (367)
T PF04286_consen 353 GG 354 (367)
T ss_pred HH
Confidence 54
No 286
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=24.77 E-value=4.4e+02 Score=31.31 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCc-----hHHHHHHHHHHHHHHHhhcC-------------
Q 010666 47 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-----EKIRVVARETNEELRAIKAD------------- 108 (504)
Q Consensus 47 e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~-----~eIR~~A~~~N~~Ll~li~~------------- 108 (504)
.|-+|-.+=..++.++.+-+.+++||+|..+..+|.-..-.+ +=+.+..+..+..++.+..+
T Consensus 710 ~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi 789 (980)
T KOG2021|consen 710 FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVI 789 (980)
T ss_pred cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456787777789999999999999999999998865332211 12445555555555544322
Q ss_pred --CCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh--chhHHHHHHHHhcCCCCHHHHHHHHHH
Q 010666 109 --PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH--FLNDIFDTLLKALSDPSDEVVLLVLEV 181 (504)
Q Consensus 109 --~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~--~~~~lfp~LLksLSD~sdeVv~~~L~L 181 (504)
.+...|-++++ +...-|.+--..|..+..+.=..++. -...++|.++-++-.-++++..-.+++
T Consensus 790 ~r~a~p~dt~aa~---------ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQk 857 (980)
T KOG2021|consen 790 ERIAKPIDTAAAA---------EKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQK 857 (980)
T ss_pred cccCCCCChhHHH---------HHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHH
Confidence 12222222222 11112445556666666555444442 234578888887776665555544444
No 287
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=24.76 E-value=7e+02 Score=24.80 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=107.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhcCC-CCCCC-------hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh----
Q 010666 84 ISDKEEKIRVVARETNEELRAIKADP-ADGFD-------VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE---- 151 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll~li~~~-~~~~d-------~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~---- 151 (504)
|.|+++.|-+-|..+-..++..+-+. ...-+ +..+-+.+...+.++++-+|++|++.+..+....-..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 56788888888888877766553221 01111 2344455666688889999999999888776433211
Q ss_pred --------------------------hhhchhHHHHHHHHhcCCCC--HHHHHHHHHHHHHHh-hchhhHHHHHHHHHhh
Q 010666 152 --------------------------VLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIA-KDLQHFRQLVVFLVHN 202 (504)
Q Consensus 152 --------------------------~l~~~~~lfp~LLksLSD~s--deVv~~~L~LLa~Is-~~~~~F~~fm~~LL~l 202 (504)
+-.--.++|..||+.|.++. ..++.-.+.-|+.|. .-..+...++..|+.+
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 11223368999999999876 666667777777777 4677888888888777
Q ss_pred cccc-chhhhhhHHHHHHHHhhcCChHHHHHHHHHhhcc-ccChHHHHHHHHHHHHHhcCchhHHHHHHH
Q 010666 203 FRVD-NSLLEKRGALIIRRLCVLLDAERVYRELSTILEG-EADLDFACTMVQALNLILLTSSELSELRDL 270 (504)
Q Consensus 203 F~~d-r~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~-~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~ 270 (504)
-... ..-........+|-. ||.+|.+--.+.+ .--.+|...+.+.|+-+=-+..|..+.-.+
T Consensus 162 ~~~~~~~~~~~~~~~~v~sv------~k~lk~~l~~llk~~~~~~~~~~i~~~L~~lg~~~~e~~~~~~~ 225 (239)
T PF11935_consen 162 NPNLSPMQPPTLSKLQVKSV------EKTLKIFLLHLLKHPASSPFQGRITQALTDLGASQREIADEAKR 225 (239)
T ss_dssp HHS------TTCSHHHHHHH------HHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTT--HHHHHHT---
T ss_pred CccccccCCccchHHHHHHH------HHHHHHHHHHHHCCCCchhhHHHHHHHHHHHccCHHHHHHHhhh
Confidence 6644 000011111222211 4455544444333 223399999999999777777776665554
No 288
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.48 E-value=1.2e+03 Score=27.95 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=65.4
Q ss_pred HHHHHHccc-ccCCchHHHHHHHHHHHHH-----------HHhhcC-CCCCCC---------------hHhHHHHHHHhc
Q 010666 75 DILGAILPC-ISDKEEKIRVVARETNEEL-----------RAIKAD-PADGFD---------------VGPILSIATRQL 126 (504)
Q Consensus 75 ~iL~~lLp~-Lsd~~~eIR~~A~~~N~~L-----------l~li~~-~~~~~d---------------~~~iv~vL~~~L 126 (504)
+.+.-+|+. .||.+.+||++|.-..+-. ..++.+ .+.++- ....++.|-...
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~ 633 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLT 633 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhh
Confidence 344445555 7777888888777665321 111111 111111 234455555555
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010666 127 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 183 (504)
Q Consensus 127 ~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa 183 (504)
.+....+|-.|+-=+.|+.-..-++.-+-..++-..+.+-..|..+++..+-=.+++
T Consensus 634 ~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 634 SDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred cChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 677788899998888888877777777777777777777777766655444333333
No 289
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=1.4e+03 Score=28.24 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCC-ChHHHHHHH-------------HH----HHHHHhc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAI-------------TW----INEFVKL 64 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~-e~~iRltaL-------------~W----I~efl~i 64 (504)
++|| .||++|-...+++...-+....-.-.++|...+.++... ++-+|.-.. .| .+.+++.
T Consensus 687 ~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~ 765 (1133)
T KOG1943|consen 687 TLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLEL 765 (1133)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhcc
Confidence 5677 899999989998888776442222225777777777665 322221110 00 2333333
Q ss_pred CCcc------------------------ccccHHHHHHHHcccccC----Cc----hHHHHHHHHHHHHHHHhhcC
Q 010666 65 GGDQ------------------------LVPYYADILGAILPCISD----KE----EKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 65 ~~~~------------------------llpylp~iL~~lLp~Lsd----~~----~eIR~~A~~~N~~Ll~li~~ 108 (504)
.|.+ .-.-..++...++.||.| +. .=||++|-+...++......
T Consensus 766 ~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 766 LPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC
Confidence 3332 222345667777777776 22 34899998888877766655
No 290
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=24.17 E-value=1.1e+03 Score=26.81 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCC--------CCchHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 15 SALWEFLQEIKNSP--------SVDYGRMAEILVQRAASPD--EFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 15 ~lL~~FLkeIk~~~--------~vD~~~iI~ILv~~l~s~e--~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
...+.||+-+.+.+ .-+..++.+.|..||..-+ +........||.....-.+ +++-++-+..+..
T Consensus 134 ~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg---i~id~eAl~lLa~ 208 (563)
T PRK06647 134 SAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ---IKYEDEALKWIAY 208 (563)
T ss_pred HHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Confidence 34566777776542 2246788888999987543 2223445667777665433 3344555555443
No 291
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.78 E-value=3.5e+02 Score=24.55 Aligned_cols=71 Identities=13% Similarity=-0.026 Sum_probs=48.6
Q ss_pred HhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhchhhhhh-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 116 GPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 116 ~~iv~vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~~l~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
-.++..|...+..+ +..|-.-|..=|-++.+.+|+..-- ---+.-..++..+++++++|...||..+.++-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46788888888544 4445555667788888889874321 11235567889999999999999999888763
No 292
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=23.76 E-value=7.3e+02 Score=24.64 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=29.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhh-----chhhHHHHHHHH-Hhhccccc-hhhhhhHHHHHHHHhh
Q 010666 165 KALSDPSDEVVLLVLEVHACIAK-----DLQHFRQLVVFL-VHNFRVDN-SLLEKRGALIIRRLCV 223 (504)
Q Consensus 165 ksLSD~sdeVv~~~L~LLa~Is~-----~~~~F~~fm~~L-L~lF~~dr-~LLe~Rg~lIIRqLC~ 223 (504)
+.+.|.+..+-..+++.+.+|.. -+..|..|+..+ ..-...+. .-+..+..++||++-.
T Consensus 85 ~~~~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r 150 (219)
T PF14677_consen 85 SEVEDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQR 150 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHH
T ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHH
Confidence 44567778888899998888872 344455555554 22222222 3556678889998744
No 293
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=23.31 E-value=99 Score=26.43 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc---HHHHHHHHcccccCCchHHHHHH
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY---YADILGAILPCISDKEEKIRVVA 95 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy---lp~iL~~lLp~Lsd~~~eIR~~A 95 (504)
.....+++..|..++...++--=.+.+.|++.++..-+..+... +-..+..+...+......+++.+
T Consensus 27 ~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~ 96 (110)
T PF04003_consen 27 FSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLL 96 (110)
T ss_pred HHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777764443344567999999999987766655 44555555555555555544443
No 294
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=23.21 E-value=7.1e+02 Score=24.31 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhchhhhhhc-hhHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhh--------chhhHHHH
Q 010666 133 TRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALS--------DPSDEVVLLVLEVHACIAK--------DLQHFRQL 195 (504)
Q Consensus 133 TRlaaL~WL~~L~~k~P~~~l~~-~~~lfp~LLksLS--------D~sdeVv~~~L~LLa~Is~--------~~~~F~~f 195 (504)
+=..+++++..+..+.|..+-.+ ++.+|+.+....+ +.++++-...-+++..|-. .-.-|-..
T Consensus 4 ~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~ 83 (223)
T PF10441_consen 4 SILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSV 83 (223)
T ss_pred HHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHH
Confidence 44568899988999988877654 5567777766654 3456777777788877762 12346677
Q ss_pred HHHHHhhcc
Q 010666 196 VVFLVHNFR 204 (504)
Q Consensus 196 m~~LL~lF~ 204 (504)
+..|+..+.
T Consensus 84 l~~LL~~l~ 92 (223)
T PF10441_consen 84 LQRLLRCLF 92 (223)
T ss_pred HHHHHHHHH
Confidence 777777665
No 295
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.12 E-value=5.9e+02 Score=23.34 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=54.5
Q ss_pred ChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhchh-H-HHHH-HHHhcCC---CCHHHHHHHHHHHHHHh
Q 010666 114 DVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLN-D-IFDT-LLKALSD---PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 114 d~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~-~-lfp~-LLksLSD---~sdeVv~~~L~LLa~Is 186 (504)
.-...+..|...+. +.++.+.+-||.=+..+.+.++..|...+. + .... |.+.+++ ...+|..+.++++..-+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 45688899999997 457878888899999999999988864322 2 2233 5566653 44699999999988876
No 296
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.06 E-value=5.9e+02 Score=23.33 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=56.7
Q ss_pred CCchHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhcCCccccccHH--HHHHH-HcccccC---CchHHHHHHHHHHHH
Q 010666 29 SVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGA-ILPCISD---KEEKIRVVARETNEE 101 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~-s~e~~iRltaL~WI~efl~i~~~~llpylp--~iL~~-lLp~Lsd---~~~eIR~~A~~~N~~ 101 (504)
...-..-+..|..|+. +.++-.++.+++-+..++.-+|..+...+. ++++. +...++. ...+|++-...+-..
T Consensus 33 ~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 33 EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHH
Confidence 3445667888999997 468889999999999999999987774332 45554 4455543 345788777777776
Q ss_pred HHHhhcC
Q 010666 102 LRAIKAD 108 (504)
Q Consensus 102 Ll~li~~ 108 (504)
.....++
T Consensus 113 W~~~f~~ 119 (141)
T cd03565 113 WADAFRG 119 (141)
T ss_pred HHHHhCC
Confidence 6666544
No 297
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.56 E-value=2.5e+02 Score=26.39 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=35.9
Q ss_pred CCCCChH---hHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 110 ADGFDVG---PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 110 ~~~~d~~---~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
.+.+.++ .++..+..-+.+..|.-..+||+|+..+.++....|.+
T Consensus 59 ~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~ 106 (164)
T PF13925_consen 59 PEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRS 106 (164)
T ss_pred cCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 55667788888999999999999999999998777654
No 298
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=22.09 E-value=9.2e+02 Score=28.83 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhcCCCCC-------CChHhHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhc
Q 010666 93 VVARETNEELRAIKADPADG-------FDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRH 148 (504)
Q Consensus 93 ~~A~~~N~~Ll~li~~~~~~-------~d~~~iv~vL~~~L~--s~~e~TRlaaL~WL~~L~~k~ 148 (504)
.+....-..|++.+.++... -+.+.++..|..++. .=...+.-...+||..+.++.
T Consensus 131 ~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 131 MVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred hcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 33334445677777775433 234556665554432 111123344557887776554
No 299
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.95 E-value=1.1e+03 Score=25.90 Aligned_cols=173 Identities=15% Similarity=0.084 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHh--ccCCCCchHH--HHHHHHHHcCCCChHHHHHHHHHHHHHH-hcCCcccc-ccHHHHHHHHcc
Q 010666 9 IRQQADSALWEFLQEI--KNSPSVDYGR--MAEILVQRAASPDEFTRLTAITWINEFV-KLGGDQLV-PYYADILGAILP 82 (504)
Q Consensus 9 VR~~ae~lL~~FLkeI--k~~~~vD~~~--iI~ILv~~l~s~e~~iRltaL~WI~efl-~i~~~~ll-pylp~iL~~lLp 82 (504)
+-.||-.+++.++-.- +..+.+.++. +++-+..-+...++-+=.-++.=+..++ .-.+..+. ..-+.+++.+..
T Consensus 272 ~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~ 351 (464)
T PF11864_consen 272 VLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEE 351 (464)
T ss_pred HHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHH
Confidence 3346666888888888 4445666666 9999998888777654444555555555 22222221 122333333322
Q ss_pred cccC------Cc------hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh
Q 010666 83 CISD------KE------EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 83 ~Lsd------~~------~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
+... .. ..++..-......+-++..+..-.-.-+++++.+......-.+.+...++ ........|.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl--~~~~~~~~Ps 429 (464)
T PF11864_consen 352 IFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVL--FYEERSCSPS 429 (464)
T ss_pred HHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHH--HHHhcccCCC
Confidence 2111 11 23444444444444444444223335678888777777666666666666 4444555554
Q ss_pred hhhhchhHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 010666 151 EVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACI 185 (504)
Q Consensus 151 ~~l~~~~~lfp~LLksLS--D~sdeVv~~~L~LLa~I 185 (504)
.- ++-.-.-.|+...- +.+.+|..++|+++.+|
T Consensus 430 ~~--~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 430 NP--DWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred Ch--HHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence 42 22233334445443 55689999999998765
No 300
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.90 E-value=5.2e+02 Score=30.03 Aligned_cols=79 Identities=33% Similarity=0.462 Sum_probs=52.2
Q ss_pred cCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHHHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCC
Q 010666 275 LVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPG 354 (504)
Q Consensus 275 l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVqLlESPiF~~LRLqLLep~ 354 (504)
+..+-+..||..|-.+....+-=.-+|.||+.- |+. |-=.|-++.++|.|..| |..|..+
T Consensus 63 ~~~P~~K~~~~~l~~~~~~~~~Rl~~L~Ll~~~-------v~~------------qp~~l~~i~~t~Lf~~L-Lk~L~~D 122 (668)
T PF04388_consen 63 VQEPHDKHLFDKLNDYFVKPSYRLQALTLLGHF-------VRS------------QPPWLYKILQTPLFKSL-LKCLQFD 122 (668)
T ss_pred cCCccHHHHHHHHHHHHcCchhHHHHHHHHHHH-------Hhc------------CCchHHHHhcChhHHHH-HHHHhhc
Confidence 455767899999999887776444555555432 111 11234456889999987 4444444
Q ss_pred CC-hhHHHHHHHHhhhccCc
Q 010666 355 RY-TWLLKALYGLLMLLPQQ 373 (504)
Q Consensus 355 ~~-p~L~k~LyglLMlLPQ~ 373 (504)
.. .-+.-+|+.|.|+||+.
T Consensus 123 ~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 123 TSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred ccHHHHHHHHHHHHHHhccc
Confidence 44 45778899999999994
No 301
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.27 E-value=2.3e+02 Score=27.30 Aligned_cols=44 Identities=32% Similarity=0.359 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHH
Q 010666 7 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLT 53 (504)
Q Consensus 7 ~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRlt 53 (504)
.++...|. +|..||++++.+ -+. .++.+.++......++..|..
T Consensus 72 ~d~h~va~-~lK~fLreLp~p-li~-~~~~~~~~~~~~~~~~~~~~~ 115 (203)
T cd04386 72 SDPHAVAS-ALKSYLRELPDP-LLT-YNLYEDWVQAANKPDEDERLQ 115 (203)
T ss_pred CCHHHHHH-HHHHHHHhCCCc-cCC-HHHHHHHHHHHccCCHHHHHH
Confidence 36778885 999999999865 233 234444444455555555543
No 302
>PF09245 MA-Mit: Mycoplasma arthritidis-derived mitogen; InterPro: IPR015326 Mycoplasma arthritidis-derived mitogen (MA-Mit) adopts a completely alpha-helical structure consisting of ten alpha helices arranged in two orthogongal bundles. MA-Mit is a superantigen that can activate large fractions of T cells bearing particular TCR V-beta elements. Two MA-Mit molecules form an asymmetric dimer and cross-link two MHC antigens to form a dimerised MA-Mit-MHC complex []. ; PDB: 3KPH_B 2OJE_H 2ICW_G 1R5I_H.
Probab=21.13 E-value=1e+02 Score=29.46 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 010666 250 MVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEED 322 (504)
Q Consensus 250 mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~e 322 (504)
.||.+|+...|-.||.++-+ |.++|.-.=-..+|++ =+-|-|+||++|+..+-.++
T Consensus 16 ~~~~~~n~v~t~~el~~i~~-----lsn~~~tkev~~~f~~------------k~n~fy~haf~i~~~y~g~~ 71 (214)
T PF09245_consen 16 FVQNVNNEVFTNNELDDIYN-----LSNKDKTKEVIKQFRS------------KVNQFYQHAFNIVNDYNGIE 71 (214)
T ss_dssp S-TT-SSTS--HHHHHHHHT-----T--SSGGHHHHHHHHH------------HHHHHHHHHHHHHHHHTTST
T ss_pred HHHHhhhheeehHHHHHHHh-----hcchHHHHHHHHHHHH------------HHHHHHHHHHhhHHHhhhHH
Confidence 37889999999999887533 3444433333445553 36788999999999886554
No 303
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=21.10 E-value=7.3e+02 Score=25.59 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHh
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 125 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~ 125 (504)
|..|++.+.=|..+++..+.+++.|+ .+|+.-.|.++..+.+--|.+|.-+-++++.-= .+++
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd----~GL~----------- 174 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDD----VGLN----------- 174 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSH----HHHH-----------
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcch----hHHH-----------
Confidence 56799999999999998888888874 467777777777766666666665554433210 0000
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccc
Q 010666 126 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV 205 (504)
Q Consensus 126 L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~ 205 (504)
..+... .|..|+..+. .++...+ ..++|..+....+..-.++|+|..--..+-..|.+.+++
T Consensus 175 yiC~t~-eRf~av~~vL--------------~~mV~~l---~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd 236 (262)
T PF04078_consen 175 YICQTA-ERFFAVAMVL--------------NKMVEQL---VKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRD 236 (262)
T ss_dssp HHTSSH-HHHHHHHHHH--------------HHHHHHH---HHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTS
T ss_pred HHhcCH-HHHHHHHHHH--------------HHHHHHH---ccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhc
Confidence 001110 1222221111 1111111 224566666666666666766666655555666666665
Q ss_pred c--chhhhhhH--HHHHHHHhhcCC
Q 010666 206 D--NSLLEKRG--ALIIRRLCVLLD 226 (504)
Q Consensus 206 d--r~LLe~Rg--~lIIRqLC~~L~ 226 (504)
+ ...++.=. .-+..||..+++
T Consensus 237 ~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 237 GTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp STTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 4 33332211 226667666654
No 304
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=1.2e+03 Score=29.40 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=84.7
Q ss_pred CccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC--CCCC-hHhHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010666 66 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA--DGFD-VGPILSIATRQLSSEWEATRIEALHWIS 142 (504)
Q Consensus 66 ~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~--~~~d-~~~iv~vL~~~L~s~~e~TRlaaL~WL~ 142 (504)
+..++. +..=+..|++-|+-.++..|.-|. ++|.+++.+.. ..++ ++.-..+..+-..+.+..+|.+.-+=+.
T Consensus 33 ~~~~~~-~dsel~~I~kkL~KkD~~TK~KaL---~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s 108 (1312)
T KOG0803|consen 33 DPFVLE-LDSELDIIVKKLLKRDETTKIKAL---QELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFS 108 (1312)
T ss_pred ChHHhc-cCHHHHHHHHHHhccChHHHHHHH---HhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 333444 455677888888887776664444 45555664422 2233 2233334455556888899999999999
Q ss_pred HHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 143 TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 143 ~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+|..+..+++-+|.-.+.|..+-.-.|..-.|-..+........
T Consensus 109 ~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 109 KLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred HHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999888888877766665
No 305
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.71 E-value=3.1e+02 Score=25.98 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHH
Q 010666 7 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLT 53 (504)
Q Consensus 7 ~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRlt 53 (504)
.++...|. +|..||++++.+ -+.+ .+.+-+++-.+..++..|..
T Consensus 71 ~d~~~va~-~LK~fLreLp~p-Li~~-~~~~~~~~~~~~~~~~~~~~ 114 (192)
T cd04398 71 SDIHSVAS-LLKLFFRELPEP-LLTK-ALSREFIEAAKIEDESRRRD 114 (192)
T ss_pred ccHHHHHH-HHHHHHHhCCCc-cCCH-HHHHHHHHHHhCCCHHHHHH
Confidence 47888885 999999999865 2221 22233333345555544443
No 306
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.43 E-value=9.5e+02 Score=26.84 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=61.0
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh--HHHHHHHHhcCCC--CHHHHHHHHHHHHHH----h
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDP--SDEVVLLVLEVHACI----A 186 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~--~lfp~LLksLSD~--sdeVv~~~L~LLa~I----s 186 (504)
-.++|..|.+.+.+.+..+.+-||.=|.++.+.++..|-..+. +++..+++..... +-.|..++|.+|..= |
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 3588999999999888889999999888899999877764333 4677788877765 568888998887664 3
Q ss_pred hchhhHHHH
Q 010666 187 KDLQHFRQL 195 (504)
Q Consensus 187 ~~~~~F~~f 195 (504)
+.+.|+..+
T Consensus 116 ~~~~~~~~~ 124 (470)
T KOG1087|consen 116 GPDGYLPDY 124 (470)
T ss_pred CCCCcchhH
Confidence 445565544
No 307
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.11 E-value=6.6e+02 Score=29.74 Aligned_cols=138 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHh-hchhhHHHHHHH-HHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHH
Q 010666 169 DPSDEVVLLVLEVHACIA-KDLQHFRQLVVF-LVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDF 246 (504)
Q Consensus 169 D~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~-LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F 246 (504)
++..+.+...++=+...- +-.++++.++.. .-....+=...|+.-|..|...+...+++ .++..|.++++-.++++-
T Consensus 172 ~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~-~~~~~L~~i~~l~~~~~~ 250 (806)
T PF05478_consen 172 DDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLLGGDIQDQLGS-NVYPALDSILDLAQAMQE 250 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcCchhHH-HHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHHHHHHHHhhccccch
Q 010666 247 ACTMVQALNLILLTSSELS-ELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNV 325 (504)
Q Consensus 247 ~~~mVq~Ln~iLLTs~El~-~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~li~~~~~~eitv 325 (504)
+..-.+.+|..+-...+.. .||..|++. .+++-.++.. +|+++ .+.++.......+++.
T Consensus 251 ~~~~L~~v~~~~~~L~~~~~qL~~~L~~v-----K~~L~~~l~~-~C~~~--------------~C~~i~~~~~~l~l~~ 310 (806)
T PF05478_consen 251 TKELLQNVNSSLKDLQEYQSQLRDGLRGV-----KRDLNNTLQD-LCTNR--------------ECNSILSSLDILQLDA 310 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh-hCCCh--------------hhHHHHHhccccccCC
Q ss_pred HH
Q 010666 326 KF 327 (504)
Q Consensus 326 ~~ 327 (504)
++
T Consensus 311 ~~ 312 (806)
T PF05478_consen 311 DF 312 (806)
T ss_pred Cc
Done!