Query 010666
Match_columns 504
No_of_seqs 193 out of 296
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 99.4 1.9E-11 6.4E-16 117.4 17.4 188 2-196 24-216 (242)
2 4fdd_A Transportin-1; heat rep 99.3 3.6E-10 1.2E-14 126.8 27.0 196 5-203 333-535 (852)
3 2qk1_A Protein STU2; STU2P, XM 99.2 4.2E-10 1.4E-14 110.2 19.9 198 2-199 25-234 (249)
4 4fdd_A Transportin-1; heat rep 99.2 3.1E-08 1.1E-12 111.1 32.4 235 2-240 224-494 (852)
5 1b3u_A Protein (protein phosph 99.1 7.7E-10 2.6E-14 116.5 16.9 249 2-258 290-547 (588)
6 1ibr_B P95, importin beta-1 su 99.1 5.8E-09 2E-13 106.5 20.8 183 3-188 100-289 (462)
7 2bpt_A Importin beta-1 subunit 99.0 4.2E-08 1.4E-12 108.4 23.3 224 2-227 420-672 (861)
8 2bpt_A Importin beta-1 subunit 99.0 8E-08 2.7E-12 106.1 24.7 184 2-188 104-296 (861)
9 1u6g_C TIP120 protein, CAND1; 98.9 4.4E-07 1.5E-11 105.8 30.9 259 2-262 443-724 (1230)
10 1u6g_C TIP120 protein, CAND1; 98.9 6.8E-08 2.3E-12 112.5 24.0 234 6-240 346-621 (1230)
11 1b3u_A Protein (protein phosph 98.9 1.5E-08 5.2E-13 106.6 15.6 177 2-187 372-548 (588)
12 1qgr_A Protein (importin beta 98.9 6E-07 2.1E-11 99.3 27.8 197 4-204 339-559 (876)
13 1qgr_A Protein (importin beta 98.9 2.5E-07 8.7E-12 102.3 24.0 203 2-205 417-702 (876)
14 2vgl_B AP-2 complex subunit be 98.8 1.9E-07 6.4E-12 101.5 20.9 233 2-243 130-404 (591)
15 2jdq_A Importin alpha-1 subuni 98.7 2.8E-07 9.7E-12 93.9 16.9 261 1-262 115-393 (450)
16 2vgl_A Adaptor protein complex 98.7 5.9E-07 2E-11 98.8 18.8 234 3-241 158-453 (621)
17 1ibr_B P95, importin beta-1 su 98.7 8.7E-07 3E-11 90.3 18.7 199 2-204 226-461 (462)
18 1w63_A Adapter-related protein 98.6 4.8E-07 1.6E-11 99.1 16.8 225 1-240 187-433 (618)
19 4hxt_A De novo protein OR329; 98.6 3.7E-07 1.3E-11 85.4 12.2 227 1-227 10-245 (252)
20 4b8j_A Importin subunit alpha- 98.6 3E-06 1E-10 89.4 20.1 302 1-322 168-498 (528)
21 2vgl_B AP-2 complex subunit be 98.5 4.7E-06 1.6E-10 90.5 21.7 187 1-204 247-437 (591)
22 1wa5_B Importin alpha subunit; 98.5 4.1E-06 1.4E-10 88.7 20.6 261 2-263 182-461 (530)
23 1oyz_A Hypothetical protein YI 98.5 5.6E-06 1.9E-10 80.0 19.1 216 2-257 32-248 (280)
24 1wa5_B Importin alpha subunit; 98.5 6E-06 2E-10 87.4 20.7 258 1-260 138-413 (530)
25 3ltj_A Alpharep-4; protein eng 98.5 5.8E-06 2E-10 76.0 17.0 123 33-186 13-135 (201)
26 3ltm_A Alpha-REP4; protein eng 98.5 2.1E-06 7.3E-11 79.5 13.9 145 2-187 28-172 (211)
27 2jdq_A Importin alpha-1 subuni 98.5 5.1E-06 1.8E-10 84.6 18.0 258 2-261 29-307 (450)
28 3ltj_A Alpharep-4; protein eng 98.4 3E-06 1E-10 77.9 14.3 145 1-186 22-166 (201)
29 3ltm_A Alpha-REP4; protein eng 98.4 1E-05 3.5E-10 74.9 17.5 185 32-257 17-201 (211)
30 2qk2_A LP04448P; mini spindles 98.4 8E-06 2.7E-10 77.9 17.1 189 33-228 14-210 (242)
31 4db8_A Armadillo-repeat protei 98.4 1.3E-06 4.5E-11 82.5 11.3 222 2-223 21-251 (252)
32 4hxt_A De novo protein OR329; 98.4 9.3E-06 3.2E-10 75.8 16.8 189 35-223 3-199 (252)
33 4b8j_A Importin subunit alpha- 98.4 7.4E-06 2.5E-10 86.4 16.7 262 2-263 83-362 (528)
34 1w63_A Adapter-related protein 98.4 1.8E-05 6E-10 86.7 20.0 190 34-239 313-519 (618)
35 1jdh_A Beta-catenin; beta-cate 98.3 2.3E-05 8E-10 81.6 20.0 270 2-273 26-353 (529)
36 1oyz_A Hypothetical protein YI 98.3 4.5E-05 1.5E-09 73.6 19.7 156 3-186 64-220 (280)
37 4ffb_C Protein STU2; tubulin f 98.3 1.7E-05 5.7E-10 77.7 16.7 149 32-186 53-211 (278)
38 4db6_A Armadillo repeat protei 98.3 6E-06 2.1E-10 75.9 12.0 195 29-223 7-209 (210)
39 2qk1_A Protein STU2; STU2P, XM 98.2 5E-06 1.7E-10 81.2 11.1 107 2-108 113-224 (249)
40 2z6h_A Catenin beta-1, beta-ca 98.2 0.0001 3.5E-09 80.2 21.3 272 1-272 22-349 (644)
41 3ul1_B Importin subunit alpha- 98.2 2.5E-05 8.6E-10 83.1 15.5 297 1-318 151-476 (510)
42 2of3_A ZYG-9; multifunctional 98.1 3.9E-05 1.3E-09 76.3 15.6 164 35-213 88-260 (266)
43 4db6_A Armadillo repeat protei 98.1 5E-06 1.7E-10 76.5 8.1 187 1-187 20-209 (210)
44 2z6g_A B-catenin; FULL-length, 98.1 0.00013 4.3E-09 82.1 20.8 267 5-273 205-486 (780)
45 4db8_A Armadillo-repeat protei 98.0 2.3E-05 8E-10 73.9 10.8 188 36-223 14-209 (252)
46 3tpo_A Importin subunit alpha- 98.0 0.00022 7.6E-09 75.9 18.9 261 1-262 170-452 (529)
47 1jdh_A Beta-catenin; beta-cate 97.9 0.0073 2.5E-07 62.6 28.8 256 5-262 72-388 (529)
48 2z6h_A Catenin beta-1, beta-ca 97.9 0.0067 2.3E-07 65.9 28.9 257 5-263 69-386 (644)
49 2iw3_A Elongation factor 3A; a 97.9 0.0018 6.3E-08 74.8 24.3 173 6-186 28-203 (986)
50 2vgl_A Adaptor protein complex 97.9 0.0004 1.4E-08 76.3 18.1 120 32-160 327-447 (621)
51 2z6g_A B-catenin; FULL-length, 97.8 0.0021 7E-08 72.3 22.8 258 2-262 159-431 (780)
52 3ul1_B Importin subunit alpha- 97.6 0.0066 2.3E-07 64.4 22.0 257 4-262 68-348 (510)
53 2x19_B Importin-13; nuclear tr 97.5 0.031 1.1E-06 63.1 27.0 168 32-204 443-622 (963)
54 3tpo_A Importin subunit alpha- 97.3 0.011 3.8E-07 62.7 20.0 219 5-224 88-365 (529)
55 2x1g_F Cadmus; transport prote 97.3 0.036 1.2E-06 62.8 25.2 166 33-204 458-638 (971)
56 1xqr_A HSPBP1 protein; armadil 97.3 0.001 3.5E-08 66.6 11.1 224 8-240 55-284 (296)
57 4ffb_C Protein STU2; tubulin f 97.3 0.00071 2.4E-08 66.1 9.6 102 2-108 112-216 (278)
58 2x1g_F Cadmus; transport prote 97.2 0.011 3.7E-07 67.1 19.2 216 4-227 517-764 (971)
59 3u0r_A Apoptosis inhibitor 5; 97.1 0.097 3.3E-06 56.0 24.2 233 5-260 40-319 (507)
60 2iw3_A Elongation factor 3A; a 97.1 0.0047 1.6E-07 71.4 15.4 187 2-203 104-299 (986)
61 1wa5_C Importin alpha RE-expor 96.9 0.048 1.6E-06 62.1 21.2 190 8-204 376-604 (960)
62 3now_A UNC-45 protein, SD10334 96.9 0.24 8.2E-06 56.2 26.3 190 36-231 332-573 (810)
63 1wa5_C Importin alpha RE-expor 96.8 0.0092 3.2E-07 68.0 13.7 194 3-200 465-687 (960)
64 1xqr_A HSPBP1 protein; armadil 96.8 0.052 1.8E-06 54.2 17.5 198 54-260 12-239 (296)
65 2x19_B Importin-13; nuclear tr 96.6 0.093 3.2E-06 59.2 19.7 224 31-261 332-601 (963)
66 2of3_A ZYG-9; multifunctional 96.5 0.062 2.1E-06 53.3 16.0 144 2-156 96-246 (266)
67 3now_A UNC-45 protein, SD10334 96.5 0.021 7.3E-07 64.8 13.5 254 2-258 504-781 (810)
68 1te4_A Conserved protein MTH18 96.4 0.0013 4.4E-08 56.8 2.3 123 31-185 9-131 (131)
69 1xm9_A Plakophilin 1; armadill 96.3 0.1 3.5E-06 54.6 16.7 103 2-104 11-116 (457)
70 3tjz_B Coatomer subunit gamma; 96.3 0.45 1.5E-05 48.9 21.1 181 2-199 34-218 (355)
71 3b2a_A TON_1937, putative unch 96.1 0.12 4E-06 50.8 14.9 176 2-187 42-218 (265)
72 3b2a_A TON_1937, putative unch 95.8 0.21 7.1E-06 49.1 14.9 179 32-218 31-213 (265)
73 1xm9_A Plakophilin 1; armadill 95.7 0.12 4.2E-06 53.9 14.2 188 36-225 4-222 (457)
74 3l6x_A Catenin delta-1; cateni 95.4 0.051 1.8E-06 59.5 10.1 208 13-225 28-272 (584)
75 3ibv_A Exportin-T; karyopherin 95.3 0.92 3.1E-05 52.4 20.8 201 3-204 505-752 (980)
76 3eg5_B Protein diaphanous homo 95.2 0.26 8.9E-06 51.1 14.3 174 159-370 163-344 (383)
77 3ibv_A Exportin-T; karyopherin 95.0 0.17 5.7E-06 58.5 13.3 145 34-186 193-360 (980)
78 3nmw_A APC variant protein; AR 95.0 0.37 1.3E-05 49.1 14.6 195 32-226 125-337 (354)
79 3tt9_A Plakophilin-2; cell adh 94.9 0.1 3.6E-06 50.5 9.7 188 35-226 9-232 (233)
80 2bnx_A Diaphanous protein homo 94.8 0.43 1.5E-05 49.4 14.5 174 159-370 101-282 (386)
81 3gs3_A Symplekin, LD45768P; he 94.7 3 0.0001 40.9 19.5 112 31-146 50-173 (257)
82 3m1i_C Exportin-1; heat repeat 94.7 3.7 0.00013 47.1 23.4 189 32-226 342-572 (1049)
83 3grl_A General vesicular trans 94.5 1.5 5E-05 48.6 18.6 196 29-233 16-252 (651)
84 3o2t_A Symplekin; heat repeat, 94.5 5.1 0.00017 41.6 21.7 223 31-266 60-328 (386)
85 3nmz_A APC variant protein; pr 94.4 0.54 1.8E-05 49.8 14.5 193 32-225 241-452 (458)
86 2db0_A 253AA long hypothetical 94.4 1.7 5.8E-05 41.5 16.0 139 33-186 106-245 (253)
87 3opb_A SWI5-dependent HO expre 94.2 1.3 4.3E-05 50.2 17.6 252 2-254 466-773 (778)
88 3oc3_A Helicase MOT1, MOT1; re 93.9 0.56 1.9E-05 51.4 13.3 161 2-204 183-344 (800)
89 3m1i_C Exportin-1; heat repeat 93.7 12 0.00042 42.8 27.0 114 71-186 491-617 (1049)
90 1te4_A Conserved protein MTH18 93.4 0.21 7E-06 42.7 7.5 108 2-141 21-128 (131)
91 3nmw_A APC variant protein; AR 92.6 0.48 1.6E-05 48.3 10.1 185 2-187 136-334 (354)
92 3oc3_A Helicase MOT1, MOT1; re 92.3 0.44 1.5E-05 52.2 9.5 171 3-197 237-413 (800)
93 2db0_A 253AA long hypothetical 92.0 2.8 9.5E-05 40.1 13.5 131 74-213 102-236 (253)
94 3nmz_A APC variant protein; pr 91.8 0.61 2.1E-05 49.4 10.0 185 2-187 252-450 (458)
95 3l9t_A Putative uncharacterize 91.5 8.4 0.00029 37.5 16.8 186 16-227 38-240 (240)
96 2f31_A Diaphanous protein homo 91.3 0.67 2.3E-05 44.4 8.8 94 159-273 97-193 (233)
97 3opb_A SWI5-dependent HO expre 91.0 7.3 0.00025 44.0 18.1 220 34-258 457-727 (778)
98 3l6x_A Catenin delta-1; cateni 90.1 2.1 7.3E-05 46.7 12.5 255 1-260 56-385 (584)
99 3a6p_A Exportin-5; exportin-5, 89.9 11 0.00038 44.2 19.3 209 29-239 346-635 (1204)
100 3tt9_A Plakophilin-2; cell adh 89.8 2.3 7.9E-05 40.9 11.1 111 113-223 4-124 (233)
101 3l9t_A Putative uncharacterize 87.7 7.9 0.00027 37.7 13.3 136 3-157 81-218 (240)
102 1vsy_5 Proteasome activator BL 87.2 0.36 1.2E-05 56.1 4.0 147 52-203 735-892 (997)
103 3gs3_A Symplekin, LD45768P; he 87.1 11 0.00038 36.8 14.2 86 116-206 15-102 (257)
104 4hat_C Exportin-1; heat repeat 86.8 11 0.00037 43.8 16.2 130 69-200 489-638 (1023)
105 1vsy_5 Proteasome activator BL 85.1 5.1 0.00017 46.5 12.2 105 1-108 851-970 (997)
106 3gjx_A Exportin-1; transport, 83.0 78 0.0027 37.0 24.8 172 2-186 37-235 (1073)
107 3o2t_A Symplekin; heat repeat, 82.9 24 0.0008 36.6 15.0 135 116-255 25-186 (386)
108 3u0r_A Apoptosis inhibitor 5; 82.4 51 0.0018 35.3 17.5 120 47-184 41-160 (507)
109 1w9c_A CRM1 protein, exportin 78.6 59 0.002 32.8 18.7 182 54-273 94-311 (321)
110 3grl_A General vesicular trans 77.9 3.6 0.00012 45.5 7.2 131 74-205 121-265 (651)
111 3tjz_B Coatomer subunit gamma; 77.9 64 0.0022 32.8 18.9 145 48-205 41-187 (355)
112 3a6p_A Exportin-5; exportin-5, 75.8 35 0.0012 40.0 15.3 189 5-206 108-363 (1204)
113 3jxy_A Alkylpurine DNA glycosy 75.4 20 0.00069 33.9 10.9 93 76-184 132-224 (232)
114 4flb_A Regulation of nuclear P 74.2 9.1 0.00031 33.0 7.5 103 72-184 5-112 (132)
115 1upk_A MO25 protein; transfera 73.1 85 0.0029 32.0 20.4 187 33-224 77-333 (341)
116 3ldz_A STAM-1, signal transduc 72.8 39 0.0013 29.6 11.4 102 75-186 9-113 (140)
117 1x5b_A Signal transducing adap 72.5 39 0.0013 30.5 11.6 106 71-186 15-124 (163)
118 4hat_C Exportin-1; heat repeat 66.3 1E+02 0.0035 35.7 16.0 124 74-206 15-150 (1023)
119 3s4w_B Protein FACD2, fanconi 65.8 21 0.00072 42.6 10.2 125 57-186 382-506 (1323)
120 4gmo_A Putative uncharacterize 65.0 54 0.0019 35.8 12.9 85 80-167 39-128 (684)
121 3gjx_A Exportin-1; transport, 64.9 2.1E+02 0.0072 33.3 19.7 132 50-186 753-903 (1073)
122 1lrv_A LRV, leucine-rich repea 63.5 6.7 0.00023 37.9 4.7 64 1-98 106-169 (244)
123 3g2s_A C-terminal fragment of 62.4 85 0.0029 27.9 13.0 72 115-186 46-125 (149)
124 3ldz_A STAM-1, signal transduc 60.3 34 0.0012 30.0 8.4 79 30-108 38-118 (140)
125 1lrv_A LRV, leucine-rich repea 60.3 7.1 0.00024 37.7 4.2 63 1-97 82-144 (244)
126 4ady_A RPN2, 26S proteasome re 59.8 2.5E+02 0.0085 32.5 20.4 137 167-308 587-751 (963)
127 1x5b_A Signal transducing adap 58.1 30 0.001 31.3 7.8 78 30-107 48-128 (163)
128 3ebb_A Phospholipase A2-activa 57.9 1.5E+02 0.0051 29.3 17.9 151 119-271 105-275 (304)
129 4ady_A RPN2, 26S proteasome re 53.9 2.9E+02 0.01 31.9 16.6 112 46-171 590-701 (963)
130 1elk_A Target of MYB1; superhe 53.2 1.1E+02 0.0038 27.2 10.7 99 78-186 23-129 (157)
131 1juq_A ADP-ribosylation factor 51.6 1.4E+02 0.0048 27.0 13.8 99 78-186 20-127 (171)
132 1mhq_A ADP-ribosylation factor 50.6 1.3E+02 0.0045 26.5 11.1 95 82-186 12-115 (148)
133 4gmo_A Putative uncharacterize 49.9 2E+02 0.007 31.2 14.3 68 118-187 36-105 (684)
134 1dvp_A HRS, hepatocyte growth 47.4 73 0.0025 29.8 8.9 97 29-125 37-136 (220)
135 2b6c_A Hypothetical protein EF 45.3 68 0.0023 29.9 8.3 74 76-156 125-198 (220)
136 2km4_A Regulator of TY1 transp 44.1 1.4E+02 0.0048 26.0 9.7 101 71-181 2-109 (142)
137 3zyq_A Hepatocyte growth facto 42.5 2.2E+02 0.0075 26.7 12.3 99 75-186 12-117 (226)
138 1mhq_A ADP-ribosylation factor 40.3 1.1E+02 0.0038 27.0 8.5 76 32-107 36-119 (148)
139 1vdy_A Hypothetical protein (R 38.7 49 0.0017 29.4 5.8 40 157-196 48-88 (140)
140 3jxy_A Alkylpurine DNA glycosy 38.1 1.5E+02 0.0053 27.7 9.6 183 59-262 11-198 (232)
141 3fga_B Serine/threonine-protei 37.8 3.4E+02 0.011 28.1 12.8 76 117-195 293-375 (403)
142 1elk_A Target of MYB1; superhe 36.0 1.7E+02 0.0057 26.0 9.0 79 30-108 49-134 (157)
143 2x6h_A GH13170P, VPS34, phosph 33.4 29 0.00098 38.7 4.1 50 29-83 106-155 (696)
144 3g2s_A C-terminal fragment of 33.3 1.9E+02 0.0066 25.5 8.9 77 32-108 46-130 (149)
145 3twe_A Alpha4H; unknown functi 33.2 39 0.0013 21.3 2.9 12 262-273 15-26 (27)
146 4fu3_A Regulation of nuclear P 32.7 1.1E+02 0.0039 25.9 7.1 67 72-148 4-70 (135)
147 3vld_A DNA mismatch repair pro 31.4 1.9E+02 0.0066 30.8 9.8 161 154-352 278-458 (500)
148 3mkq_A Coatomer beta'-subunit; 31.0 1.7E+02 0.0059 31.0 9.7 104 217-322 670-779 (814)
149 2a9i_A IRAK-4, interleukin-1 r 26.8 70 0.0024 27.3 4.5 31 216-246 17-48 (113)
150 2fv2_A RCD1 required for cell 24.4 5.1E+02 0.017 25.4 11.0 56 48-103 116-173 (268)
151 1lsh_A Lipovitellin (LV-1N, LV 24.4 8.5E+02 0.029 28.0 16.3 182 5-206 407-599 (1056)
152 1w9c_A CRM1 protein, exportin 24.4 5.4E+02 0.019 25.7 17.5 98 48-146 136-248 (321)
153 1juq_A ADP-ribosylation factor 23.9 1.9E+02 0.0063 26.2 7.1 77 31-107 47-131 (171)
154 4atg_A TAF6; transcription, TF 23.6 4.5E+02 0.015 24.4 16.0 126 18-144 26-160 (196)
155 3lra_A Disks large homolog 1, 21.2 1.2E+02 0.0042 29.5 5.6 37 305-345 134-170 (254)
156 3fga_B Serine/threonine-protei 21.1 2.2E+02 0.0076 29.5 7.9 115 38-153 255-373 (403)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.9e-11 Score=117.36 Aligned_cols=188 Identities=16% Similarity=0.190 Sum_probs=162.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~-s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
+.|.+-..|.+|-..|..+++.-.....-++.++++.|...+. .++..+|..++.=+..+..-.+..+-+|.+.++..+
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5688889999999999999887433223568999999999995 899999999999999999888888999999999999
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-hhh-hhhchhH
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTE-VLHFLND 158 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~-P~~-~l~~~~~ 158 (504)
+.++.|+.+.||+.|..+...++.. ..++.+++.+...+.+.+..+|..++.||..+...+ |.. +.++++.
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~ 176 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKL 176 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 9999999999999999998887663 347899999999999999999999999999998887 553 5678999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHH
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLV 196 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm 196 (504)
+.|.|++.|.|+..+|...+.+.+..++. +++.|..++
T Consensus 177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999873 333444433
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.31 E-value=3.6e-10 Score=126.76 Aligned_cols=196 Identities=16% Similarity=0.221 Sum_probs=170.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 84 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~L 84 (504)
.+-.||.+|..+|+.+-+... ..-++.+++.+...++++++..|..++.++..+.+-++..+-+|++.++..+++++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 345689999999999988764 23467899999999999999999999999999999988888899999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHH
Q 010666 85 SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 164 (504)
Q Consensus 85 sd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LL 164 (504)
.|+++.||..|..+.+.+...+........+..+++.|...+.+++..+|.+|..+|..+.+..+..+.+|.+.+++.|+
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~ 489 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLV 489 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHH
Confidence 99999999999999999888775434455678999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHh-------hchhhHHHHHHHHHhhc
Q 010666 165 KALSDPSDEVVLLVLEVHACIA-------KDLQHFRQLVVFLVHNF 203 (504)
Q Consensus 165 ksLSD~sdeVv~~~L~LLa~Is-------~~~~~F~~fm~~LL~lF 203 (504)
+.+.+...+....+++.++.|+ .++.|+..+|..+++.+
T Consensus 490 ~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 490 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 9999887777666667766665 24569999998888544
No 3
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.24 E-value=4.2e-10 Score=110.24 Aligned_cols=198 Identities=13% Similarity=0.181 Sum_probs=167.0
Q ss_pred CCCCcHHHHHHHHHHHHH-HHHHhccCC--CCchHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhcCC-cccc-ccHHH
Q 010666 2 LSDSSHEIRQQADSALWE-FLQEIKNSP--SVDYGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGG-DQLV-PYYAD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~-FLkeIk~~~--~vD~~~iI~ILv~~l-~s~e~~iRltaL~WI~efl~i~~-~~ll-pylp~ 75 (504)
+++++-.-|.+|-..|.. +++.-++.. ..+|..++..|...+ ..++..+|..++.=|..+.+--+ ..+- +|...
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 456677777777666666 765433322 567899999999999 78888999999999999988666 7888 99999
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch---hhh
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR---TEV 152 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P---~~~ 152 (504)
++..++..+.|..+.|++.|..+...++..+......-.++.+++.|...+.+.+..+|.+++.||..+...++ .++
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 99999999999999999999999999998864321112278999999999999999999999999999999998 678
Q ss_pred hhch-hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHHHHH
Q 010666 153 LHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFL 199 (504)
Q Consensus 153 l~~~-~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm~~L 199 (504)
.+++ +.++|.|.+.+.|+..+|...+.+.+..|+. ++..|..|+..|
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8899 9999999999999999999999999999883 566788877775
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.16 E-value=3.1e-08 Score=111.06 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=185.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcC--CccccccHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~--~~~llpylp~iL~~ 79 (504)
+.|++.+||..|-.+|.++.+.-...-.-.++.+++.+...+...++.+|..++.++..+.+.. ...+-||++.++..
T Consensus 224 ~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ 303 (852)
T 4fdd_A 224 AGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPV 303 (852)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4689999999998899998875442212236789999999999999999999999887776532 23356899999999
Q ss_pred Hcccc-----------cC-----------CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHH
Q 010666 80 ILPCI-----------SD-----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 137 (504)
Q Consensus 80 lLp~L-----------sd-----------~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaa 137 (504)
+++.+ .| .+..+|+.|..+...+.....+ .-++.++..+...+.+++...|.+|
T Consensus 304 ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa 379 (852)
T 4fdd_A 304 LVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESG 379 (852)
T ss_dssp HHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99998 44 2234799999999888887642 2356788889999999999999999
Q ss_pred HHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------chhhHHHHHHHHHhhccccchhhh
Q 010666 138 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLE 211 (504)
Q Consensus 138 L~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~------~~~~F~~fm~~LL~lF~~dr~LLe 211 (504)
+.++-.+.+..+..+.++.+.++|.+++.|+|+++.|...+...+.++++ ...|+..+|..|++.+..+..-..
T Consensus 380 ~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr 459 (852)
T 4fdd_A 380 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ 459 (852)
T ss_dssp HHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998889999999999999999999999999999999884 357899999999998876554444
Q ss_pred hhHHHHHHHHhhcCCh------HHHHHHHHHhhcc
Q 010666 212 KRGALIIRRLCVLLDA------ERVYRELSTILEG 240 (504)
Q Consensus 212 ~Rg~lIIRqLC~~L~a------E~Iy~~La~iL~~ 240 (504)
..+...+.++|...+. +.|...|...+.+
T Consensus 460 ~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 460 EAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH
Confidence 5555577777765544 3455555555543
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.13 E-value=7.7e-10 Score=116.55 Aligned_cols=249 Identities=10% Similarity=0.081 Sum_probs=182.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCC--CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPS--VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~--vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~ 79 (504)
+.|++++||.+|...|++|.+.+..... ...+.+++.+...+..+++.+|..+..++..+....+... +.+.++..
T Consensus 290 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~ 367 (588)
T 1b3u_A 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPL 367 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHH
Confidence 5799999999999999999887643211 2367899999999999999999999999999987766543 36788888
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHH
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI 159 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~l 159 (504)
++.++.|++++||..|..+...+.+.+.. ..-...++..+...+.+.+..+|.+++.++..+....+.++ +.+.+
T Consensus 368 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l 442 (588)
T 1b3u_A 368 FLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKL 442 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHH
Confidence 89999999999999999988888776532 11135677888888888899999999999999988877664 34678
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhh---chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChH----HHHH
Q 010666 160 FDTLLKALSDPSDEVVLLVLEVHACIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE----RVYR 232 (504)
Q Consensus 160 fp~LLksLSD~sdeVv~~~L~LLa~Is~---~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE----~Iy~ 232 (504)
+|.+++.|.|++.+|...++..++.++. ++.++..++..|.+++.........-+-..+..++..++.+ .++.
T Consensus 443 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~ 522 (588)
T 1b3u_A 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 522 (588)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999873 34456777777777765443322222333667777766664 3444
Q ss_pred HHHHhhccccChHHHHHHHHHHHHHh
Q 010666 233 ELSTILEGEADLDFACTMVQALNLIL 258 (504)
Q Consensus 233 ~La~iL~~~~Dl~F~~~mVq~Ln~iL 258 (504)
.+...+.+ .+.+--...+.+|..+.
T Consensus 523 ~l~~~l~d-~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 523 TVLRMAGD-PVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHHGGGC-SCHHHHHHHHHHHHHHG
T ss_pred HHHhhCCC-CCchHHHHHHHHHHHHH
Confidence 44444432 22222224555555544
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.09 E-value=5.8e-09 Score=106.46 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=145.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhcC-CccccccHHHHHHH
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLG-GDQLVPYYADILGA 79 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~--e~~iRltaL~WI~efl~i~-~~~llpylp~iL~~ 79 (504)
.|+++.| +.+..++..+.+.-- +.-..+.+++.|+..+.+. ++..|..++.++..+..-. +..+-+|++.++..
T Consensus 100 ~~~~~~v-~~~~~~i~~ia~~~~--~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~ 176 (462)
T 1ibr_B 100 GTETYRP-SSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176 (462)
T ss_dssp TCCCSSS-CSHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHH
T ss_pred CCCCchh-hHHHHHHHHHHHHhc--cccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHH
Confidence 4444445 444446666654321 1124678999999999998 8999999999999999854 66778999999999
Q ss_pred HcccccCC--chHHHHHHHHHHHHHHHhhcCCCCCCCh-HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch
Q 010666 80 ILPCISDK--EEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 156 (504)
Q Consensus 80 lLp~Lsd~--~~eIR~~A~~~N~~Ll~li~~~~~~~d~-~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~ 156 (504)
++.++.|+ +++||..|.++...++..+.+....-.+ .-++.++...+.+.++.+|.++++.+..+...+|..+.+|+
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 256 (462)
T 1ibr_B 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM 256 (462)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 7999999999988876554321111001 23577888878888999999999999999999999999999
Q ss_pred h-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 010666 157 N-DIFDTLLKALSDPSDEVVLLVLEVHACIAKD 188 (504)
Q Consensus 157 ~-~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~ 188 (504)
. .+++.++..+.|.+++|+..+++.|..+++.
T Consensus 257 ~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999853
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.98 E-value=4.2e-08 Score=108.39 Aligned_cols=224 Identities=10% Similarity=0.118 Sum_probs=166.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC----ccccccHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG----DQLVPYYAD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~--~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~----~~llpylp~ 75 (504)
+.|+++.||.+|-.+|+++.+.+... +.-.++.+++.|+..+... +..|..+..-+..|....+ ..+.||++.
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~ 498 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPA 498 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 57999999999999999999888642 2445899999999999775 8899999888888888654 668899999
Q ss_pred HHHHHcccccC--CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC---------------CCHHHHHHHH
Q 010666 76 ILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS---------------EWEATRIEAL 138 (504)
Q Consensus 76 iL~~lLp~Lsd--~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s---------------~~e~TRlaaL 138 (504)
++..+++.+.+ .++++|..|.++...+.+..... ..-.+..++..+...+.+ .....|..++
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 99999999984 45789999999988888765431 000133444444444321 2345688999
Q ss_pred HHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhh-----chhhHHHHHHHHHhhccccchhhhh
Q 010666 139 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDNSLLEK 212 (504)
Q Consensus 139 ~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sd-eVv~~~L~LLa~Is~-----~~~~F~~fm~~LL~lF~~dr~LLe~ 212 (504)
..|..+....+..+.++.+.+++.++..+++.+. .|...++..++.++. -..|+..++..|++.+..+..-...
T Consensus 578 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~ 657 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSI 657 (861)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999998876 888888888888772 2357788888888887544321111
Q ss_pred hHHHHHHHHhhcCCh
Q 010666 213 RGALIIRRLCVLLDA 227 (504)
Q Consensus 213 Rg~lIIRqLC~~L~a 227 (504)
.+--.+-.++..++.
T Consensus 658 ~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 658 TAVGFIADISNSLEE 672 (861)
T ss_dssp HHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHhch
Confidence 222245555555543
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.96 E-value=8e-08 Score=106.13 Aligned_cols=184 Identities=13% Similarity=0.186 Sum_probs=152.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHh-ccCCCCchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCcc---ccccHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEI-KNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQ---LVPYYADI 76 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeI-k~~~~vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~~---llpylp~i 76 (504)
|.|+++.||+++..++..+.+.- .. -..+.+++.|+..+.+. ++..|..++.-+..+..-.+.. +-++.+.+
T Consensus 104 l~~~~~~vr~~~~~~l~~i~~~~~p~---~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~l 180 (861)
T 2bpt_A 104 LVSIEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180 (861)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHH
T ss_pred HCCCchHHHHHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Confidence 46778899999888888876543 21 24689999999999998 9999999999999998754444 67899999
Q ss_pred HHHHcccccCC--chHHHHHHHHHHHHHHHhhcCCCC-CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 77 LGAILPCISDK--EEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 77 L~~lLp~Lsd~--~~eIR~~A~~~N~~Ll~li~~~~~-~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
+..++.++.|+ +++||..|.++-..++..+...-. ......+++++...+.+++...|.+|++++..+...+|..+.
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 799999999998877655432100 001235788888888889999999999999999999999999
Q ss_pred hchh-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 010666 154 HFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAKD 188 (504)
Q Consensus 154 ~~~~-~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~ 188 (504)
+|+. .+++.+++.+.|.+++|...+++.|..+++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999853
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.94 E-value=4.4e-07 Score=105.75 Aligned_cols=259 Identities=12% Similarity=0.105 Sum_probs=196.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHHh-cCCccccccHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE--FTRLTAITWINEFVK-LGGDQLVPYYADILG 78 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~--~iRltaL~WI~efl~-i~~~~llpylp~iL~ 78 (504)
|.|++..+|.+|-.+|+++++..+..-.-.++.+++.+...+....+ .+|..++.++..++. .++..+.||++.++.
T Consensus 443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp 522 (1230)
T 1u6g_C 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522 (1230)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHH
Confidence 67899999999999999999986532222478999999999987764 899999999999987 456669999999999
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCC----CCCC-C-hHhHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhchh
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADP----ADGF-D-VGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRT 150 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~----~~~~-d-~~~iv~vL~~~L--~s~~e~TRlaaL~WL~~L~~k~P~ 150 (504)
.++.++.|++..||..|..+...+.+.+... +..+ . ++.++..+...+ .+.+...|.+|+..+-.+....+.
T Consensus 523 ~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~ 602 (1230)
T 1u6g_C 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD 602 (1230)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999988887541 1122 1 467788888888 677888999999999999999999
Q ss_pred hhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhc
Q 010666 151 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 224 (504)
Q Consensus 151 ~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~------~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~ 224 (504)
.+.++++.+++.|++.+.++.. +..++..+..|+. -+.++..++..|.+.+..+..-+..-..-.+..+|..
T Consensus 603 ~~~~~~~~~l~~L~~~l~~e~~--r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~ 680 (1230)
T 1u6g_C 603 NLGSDLPNTLQIFLERLKNEIT--RLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKN 680 (1230)
T ss_dssp GCCTHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhccchh--HHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987653 3446677777763 2567788888888887765442222222245555555
Q ss_pred CC----hHHHHHHHHHhhcc--ccChHHHHHHHHHHHHHhcCch
Q 010666 225 LD----AERVYRELSTILEG--EADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 225 L~----aE~Iy~~La~iL~~--~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
.+ .+.+-..+..++.- ++|.+....+.+.|..++=+.+
T Consensus 681 ~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 681 YSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp CCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred ccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 43 35555555444332 6788888888888888775544
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.93 E-value=6.8e-08 Score=112.54 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=174.6
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc------------------
Q 010666 6 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD------------------ 67 (504)
Q Consensus 6 n~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~------------------ 67 (504)
..+||.+|..+|+.+.......-.--++.+++.|+.+++..++.+|..++..+..++.-.+.
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL 425 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHH
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchH
Confidence 45689999999999887322110123677889999999989999999999999999875432
Q ss_pred -cccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCH--HHHHHHHHHHHHH
Q 010666 68 -QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWE--ATRIEALHWISTL 144 (504)
Q Consensus 68 -~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e--~TRlaaL~WL~~L 144 (504)
.+-+++|.++.++++.+.|+++.+|..|..+...+.....+.-. -.++.++..+...+.+.+. ..|.+++.++..+
T Consensus 426 ~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 426 TMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 504 (1230)
T ss_dssp HHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 34578999999999999999999999999998888877533111 1367889999999987764 8899999999999
Q ss_pred Hhhc-hhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh---c---------hhhHHHHHHHHHhhcc--ccchh
Q 010666 145 LNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK---D---------LQHFRQLVVFLVHNFR--VDNSL 209 (504)
Q Consensus 145 ~~k~-P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~---~---------~~~F~~fm~~LL~lF~--~dr~L 209 (504)
.... |+.+.+|++.++|.+++.+.|+...|...++..++.+++ . ..|+..++..++..+. .....
T Consensus 505 ~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~ 584 (1230)
T 1u6g_C 505 LCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584 (1230)
T ss_dssp HHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHH
T ss_pred HHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHH
Confidence 8755 455888999999999999999999998899999988872 2 2688899998888884 22332
Q ss_pred hhhhHHHHHHHHhhcCCh------HHHHHHHHHhhcc
Q 010666 210 LEKRGALIIRRLCVLLDA------ERVYRELSTILEG 240 (504)
Q Consensus 210 Le~Rg~lIIRqLC~~L~a------E~Iy~~La~iL~~ 240 (504)
........+..|+...|. ..+...+.+.+..
T Consensus 585 vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~ 621 (1230)
T 1u6g_C 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN 621 (1230)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc
Confidence 233333355555555443 3444455555543
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.90 E-value=1.5e-08 Score=106.64 Aligned_cols=177 Identities=17% Similarity=0.134 Sum_probs=131.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|++++||.+|-..|+.+.+.+... .-.+.+++.|...+...+..+|..++.++..+....+.+. +.+.++..++
T Consensus 372 l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~ 447 (588)
T 1b3u_A 372 LKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCM 447 (588)
T ss_dssp HTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHH
Confidence 45667777777766676666654311 1135678888887877788888888888888877655543 3467888888
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
..+.|++.+||+.|..+...+.+.+.. ...++.++..|...+.+.+..+|.+++.++..+....+.+. +.+.++|
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~ 522 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLP 522 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHH
Confidence 888888888998888888888877633 22245677777776677788888888888888887766553 6678888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
.+++.+.|++++|...++..+..++.
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 88888888888888888888888873
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.88 E-value=6e-07 Score=99.32 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=154.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC-ccccccHHHHHHHHcc
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-DQLVPYYADILGAILP 82 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~-~~llpylp~iL~~lLp 82 (504)
|.+..+|.+|..+|+.+.+.... --++.+++.+...+.+++...|..++..+..+..-.+ ..+-+|++.++..+++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~ 415 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34567999999999998877652 2277899999999999999999999999998887655 5577899999999999
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhcCCC-CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch------------
Q 010666 83 CISDKEEKIRVVARETNEELRAIKADPA-DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR------------ 149 (504)
Q Consensus 83 ~Lsd~~~eIR~~A~~~N~~Ll~li~~~~-~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P------------ 149 (504)
++.|+++.||..|..+.+.+.+.+.... ..-.+..+++.+...+.++ ...|.+|...+..+....+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 9999999999999999999998875421 2234788999998888774 7789999988888888765
Q ss_pred --hhhhhchhHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhh-----chhhHHHHHHHHHhhcc
Q 010666 150 --TEVLHFLNDIFDTLLKALSDPS---DEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 150 --~~~l~~~~~lfp~LLksLSD~s---deVv~~~L~LLa~Is~-----~~~~F~~fm~~LL~lF~ 204 (504)
..+.+|.+.++|.|++.+.+.+ ..+...+++.+..+.. ...|...++..+++.+.
T Consensus 495 ~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 559 (876)
T 1qgr_A 495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559 (876)
T ss_dssp CCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHH
Confidence 3477899999999999998763 4566666776666652 22345555555555443
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.86 E-value=2.5e-07 Score=102.30 Aligned_cols=203 Identities=14% Similarity=0.127 Sum_probs=154.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC-------------
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG------------- 66 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~--~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~------------- 66 (504)
|.|+++.||.+|-.+|++|.+.+... ..-.++.+++.|...+... +.+|..+...+..+....+
T Consensus 417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 58999999999999999999988642 1345889999999999874 8889999999999988743
Q ss_pred -ccccccHHHHHHHHcccccCCc---hHHHHHHHHHHHHHHHhhc-----------------------------------
Q 010666 67 -DQLVPYYADILGAILPCISDKE---EKIRVVARETNEELRAIKA----------------------------------- 107 (504)
Q Consensus 67 -~~llpylp~iL~~lLp~Lsd~~---~eIR~~A~~~N~~Ll~li~----------------------------------- 107 (504)
..+.||++.++..+++++.+.+ ..+|..+-++...+.+.+.
T Consensus 496 ~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~ 575 (876)
T 1qgr_A 496 TYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRI 575 (876)
T ss_dssp CCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHH
T ss_pred chhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHH
Confidence 4588999999999999998753 4566555554443332211
Q ss_pred ------------------CCC-CC--CChHhHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHH
Q 010666 108 ------------------DPA-DG--FDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 164 (504)
Q Consensus 108 ------------------~~~-~~--~d~~~iv~vL~~~L~s~~--e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LL 164 (504)
..+ .. -..+.++..+...+.+.+ ..+|..++.++..+....+..+.+|.+.++|.++
T Consensus 576 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~ 655 (876)
T 1qgr_A 576 QFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG 655 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 00 113455666666666553 3689999999999999999999999999999999
Q ss_pred HhcCCC-CHHHHHHHHHHHHHHhh-----chhhHHHHHHHHHhhccc
Q 010666 165 KALSDP-SDEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRV 205 (504)
Q Consensus 165 ksLSD~-sdeVv~~~L~LLa~Is~-----~~~~F~~fm~~LL~lF~~ 205 (504)
+.|.|. +++|...++..+..|+. -..|...+|..+++.+..
T Consensus 656 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 656 IGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC
Confidence 999997 88999999999999873 235678888888888876
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.82 E-value=1.9e-07 Score=101.49 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=158.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc-cccc--------
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPY-------- 72 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~-llpy-------- 72 (504)
|.|+++.||..|-.++.++.+. ....+..+.+++.|...+..+++.+|..|+.-+.++..-.+.. .+..
T Consensus 130 L~d~~~~VRk~A~~al~~i~~~--~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~L 207 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHDI--NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKL 207 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhh--ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHH
Confidence 6788888988888888887762 1212333568888888888888888888888888876655432 1111
Q ss_pred -----------------------------HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC--hHhHHHH
Q 010666 73 -----------------------------YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD--VGPILSI 121 (504)
Q Consensus 73 -----------------------------lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d--~~~iv~v 121 (504)
..+++..+++++.|.++.|+-.|.++-..+...+....+.+. ++.+...
T Consensus 208 l~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 287 (591)
T 2vgl_B 208 LTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPP 287 (591)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHH
T ss_pred HHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 135667777788888888887777776554332211111111 1344445
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Q 010666 122 ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVH 201 (504)
Q Consensus 122 L~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~ 201 (504)
|. .+.+++..+|.+||++|..+...+|+.+.++...++ ++.+.+..|..++++++..++ +++..+.++..|.+
T Consensus 288 L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-----~~~~d~~~Ir~~al~~L~~l~-~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 288 LV-TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-----VKYNDPIYVKLEKLDIMIRLA-SQANIAQVLAELKE 360 (591)
T ss_dssp HH-HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-----CCTTSCHHHHHHHHHHHHHTC-CSSTHHHHHHHHHH
T ss_pred HH-HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-----eccCChHHHHHHHHHHHHHHC-ChhhHHHHHHHHHH
Confidence 55 345678899999999999999999998887766542 443444999999999999998 45567888888888
Q ss_pred hccccchhhhhhHHHHHHHHhhcCC--hHHHHHHHHHhhccccC
Q 010666 202 NFRVDNSLLEKRGALIIRRLCVLLD--AERVYRELSTILEGEAD 243 (504)
Q Consensus 202 lF~~dr~LLe~Rg~lIIRqLC~~L~--aE~Iy~~La~iL~~~~D 243 (504)
+..+...-.......-|.++|...+ ++.+...|.+.+....+
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~ 404 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVN 404 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccch
Confidence 8876544333333346777777764 36677777777755433
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.71 E-value=2.8e-07 Score=93.95 Aligned_cols=261 Identities=14% Similarity=0.042 Sum_probs=179.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhcC-CccccccHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAAS-PDEFTRLTAITWINEFVKLG-GDQLVPYYADIL 77 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s-~e~~iRltaL~WI~efl~i~-~~~llpylp~iL 77 (504)
+|.|++++||..|-.+|..+..+-... ..+--..+++.|+..+.. .++.+|..++.-+..+..-. +..-..+..+++
T Consensus 115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 194 (450)
T 2jdq_A 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 367889999999988888876532100 001113468888888885 68899999999888888654 333334558889
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL- 156 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~- 156 (504)
..++..+.+++++++..|..+...+.....+....+--..++..|...+.+++..+|..|+.=|..+-...+...-...
T Consensus 195 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 9999999999999999888887665431100000000123577788888888999999998777777666554332222
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhHH-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHH-
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER- 229 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~- 229 (504)
.+.+|.|++.|+++++.|...++..++.|+. ++...+ .++..|++++..+..-....+...+.++|..-+++.
T Consensus 275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3799999999999999999999999999994 333332 455667777776655455566678899987655542
Q ss_pred -------HHHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666 230 -------VYRELSTILEGEADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 230 -------Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
+...|.+.+.. .|.+.....+..|.+++-..+
T Consensus 355 ~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 355 KYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhch
Confidence 44555555543 466777777777777665433
No 16
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.66 E-value=5.9e-07 Score=98.77 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=158.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 82 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp 82 (504)
.|+++-||..|--++..+.+.-+. .+..+.+++.|..-+..+++..+..|+.-+.++..-.+..+.+++|.++..+-.
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ 235 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSR 235 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 799999999998899999883221 233357888888888889999999999999998887777677777766554433
Q ss_pred cc-------------------------------cC-CchHHHHHHHHHHHHHHHhhcCC---------------------
Q 010666 83 CI-------------------------------SD-KEEKIRVVARETNEELRAIKADP--------------------- 109 (504)
Q Consensus 83 ~L-------------------------------sd-~~~eIR~~A~~~N~~Ll~li~~~--------------------- 109 (504)
.+ .. ++++.++.-..+...++....+.
T Consensus 236 ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~ 315 (621)
T 2vgl_A 236 IVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315 (621)
T ss_dssp HHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHH
Confidence 22 11 23444443222222333221110
Q ss_pred -----CCCCC-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 010666 110 -----ADGFD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLEVH 182 (504)
Q Consensus 110 -----~~~~d-~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLS-D~sdeVv~~~L~LL 182 (504)
+..-+ ....++.|...+.+.+..+|..||+||..+...+|. ...+....+.++.+|. |++..|..++|+++
T Consensus 316 ~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL 393 (621)
T 2vgl_A 316 LIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLL 393 (621)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Confidence 11111 345678888888888899999999999999999873 1223445567788888 99999999999999
Q ss_pred HHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCC--hHHHHHHHHHhhccc
Q 010666 183 ACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD--AERVYRELSTILEGE 241 (504)
Q Consensus 183 a~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~--aE~Iy~~La~iL~~~ 241 (504)
..++ ++.+.+.++..|++++.....-+....-.-|..+|.... ++..-.++.+.+...
T Consensus 394 ~~l~-~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 394 YAMC-DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA 453 (621)
T ss_dssp HHHC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred HHHc-ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 9998 467899999999998875444222222224555555543 355556666666543
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.66 E-value=8.7e-07 Score=90.26 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=155.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchH-HHHHHHHHHcCCCChHHHHHHHHHHHHHHhcC---------------
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG--------------- 65 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~-~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~--------------- 65 (504)
+.|++.+||.++-.+|..+...-...-.-.++ .+++.++..+...++.+|..++..+..+....
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 46888999998888999988866432122355 88999998888889999999999777776642
Q ss_pred -----Cccc-cccHHHHHHHHcccccCC-------chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHH
Q 010666 66 -----GDQL-VPYYADILGAILPCISDK-------EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA 132 (504)
Q Consensus 66 -----~~~l-lpylp~iL~~lLp~Lsd~-------~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~ 132 (504)
...+ -+|++.++..++.++.+. +..+|..|..+...+.....+ --++.++..+...+.+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChH
Confidence 1112 246788888888888653 346999999999988887642 22467788888899999999
Q ss_pred HHHHHHHHHHHHHhhch-hhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHhhcc
Q 010666 133 TRIEALHWISTLLNRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 133 TRlaaL~WL~~L~~k~P-~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-------~~~~F~~fm~~LL~lF~ 204 (504)
.|.+|+.=+-.+.+-.. +.+-++.+.++|.+++.|.|+++.|...+...+.++++ ...|+..+|..|++.++
T Consensus 382 ~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999999888887554 45667889999999999999999999999999999983 24688888888876553
No 18
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.63 E-value=4.8e-07 Score=99.09 Aligned_cols=225 Identities=15% Similarity=0.114 Sum_probs=144.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCC--Cch----HHHHHHHHHHc-----------CCCChHHHHHHHHHHHHHHh
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSPS--VDY----GRMAEILVQRA-----------ASPDEFTRLTAITWINEFVK 63 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~--vD~----~~iI~ILv~~l-----------~s~e~~iRltaL~WI~efl~ 63 (504)
+|+|+|+.|+.+|-.+|.++... .+. -.| +.++.+|...+ +..+|..|..++.|+..+..
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~---~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCER---SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCS---HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 35677777776666666554321 010 022 33444444322 14589999999999998876
Q ss_pred cCCccccccHHHHHHHHccc---ccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHH
Q 010666 64 LGGDQLVPYYADILGAILPC---ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 140 (504)
Q Consensus 64 i~~~~llpylp~iL~~lLp~---Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~W 140 (504)
..+. ...-+-++|..+++. ..+.+..|.-.|.++-.. + .. +.--....++.|...+.+++..+|.+||.|
T Consensus 264 ~~~~-~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~---l-~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~ 336 (618)
T 1w63_A 264 NDDD-SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMD---I-KS--ESGLRVLAINILGRFLLNNDKNIRYVALTS 336 (618)
T ss_dssp TCHH-HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHH---S-CC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh---c-CC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 5332 111122333334332 233445566555554432 1 11 100013467888888888888999999999
Q ss_pred HHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Q 010666 141 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 220 (504)
Q Consensus 141 L~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRq 220 (504)
|..+...+|.-+.+|. +.++.+|+|++..|..++++++..++. +..++.++..|++++..+..-.....-..|.+
T Consensus 337 L~~i~~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~-~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 337 LLKTVQTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVN-GNNIRGMMKELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCC-SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998776654 467788899999999999999999985 45578888999988877655444444557888
Q ss_pred HhhcCC--hHHHHHHHHHhhcc
Q 010666 221 LCVLLD--AERVYRELSTILEG 240 (504)
Q Consensus 221 LC~~L~--aE~Iy~~La~iL~~ 240 (504)
+|...+ .+.....+-+.|..
T Consensus 412 la~k~~~~~~~~v~~ll~lL~~ 433 (618)
T 1w63_A 412 AAEKYAPSKRWHIDTIMRVLTT 433 (618)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHh
Confidence 888763 35555555555544
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.58 E-value=3.7e-07 Score=85.44 Aligned_cols=227 Identities=13% Similarity=0.060 Sum_probs=158.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc-ccHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILG 78 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll-pylp~iL~ 78 (504)
+|.++++++|..|-.+|..+..+-... ..+--...++.|+..+.+.++.+|..++.=|..+..-.+..-- -.-.+.+.
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 367888999999888888776543210 0111235799999999999999999888766666543222111 11235788
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-chh
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLN 157 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~~ 157 (504)
.++..|.++++++|..|..+...+...-.+....+--...+..|...+.++++.+|..|+.-|..+-...+..... ...
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 169 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 169 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 8888999999999999998887765311000000001246788899999999999999999999887766654222 235
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHH------HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh
Q 010666 158 DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 158 ~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~------~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a 227 (504)
+.+|.|++.|.+++++|...++..+..++.+..... .++..|+++...+..-....+..++++|+..-+.
T Consensus 170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 799999999999999999999999999995332222 2456777777766665566677788888875443
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.56 E-value=3e-06 Score=89.42 Aligned_cols=302 Identities=14% Similarity=0.099 Sum_probs=201.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhcCCccccccHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l-~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~ 78 (504)
+|.+++.+||..|-.+|..+-.+-... ..+--...++.|+..+ ...++.++..++.=|..+..-.+..-....++++.
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 367899999999998998886532110 0011123678888888 66788888888877777776655555556788999
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC---hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d---~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
.+.+.|.+++++++..|..+...+..- ..+... -..++..|...+.++++.+|..|+.=|..+....+...-..
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999998887665421 100000 01356788888999999999999887777766555433222
Q ss_pred -hhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhh-chhhHH-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh
Q 010666 156 -LNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK-DLQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 156 -~~~lfp~LLksLSD~-sdeVv~~~L~LLa~Is~-~~~~F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a 227 (504)
..+.+|.|++.|.++ ++.|...+...++.++. ++.... .++..|++++.++..-....+...+.++|..-++
T Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence 357899999999999 99999999999999984 333322 3445677777766554555666688888877444
Q ss_pred H--------HHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHH--------HHHHHHhhcCCcchhHHHHHHHHHh
Q 010666 228 E--------RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSE--------LRDLLKKSLVNPAGKDLFVSLYASW 291 (504)
Q Consensus 228 E--------~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~--------lR~~L~~~l~~~~~~~lF~~L~~sW 291 (504)
+ .+...|...|.. .|.+.....+..|.+++-..+.... ++..+.. .++......|
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~l~~L---- 475 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDE----AEGLEKIENL---- 475 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHH----TTHHHHHHHG----
T ss_pred HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH----CCcHHHHHHH----
Confidence 3 234556666654 6777777888888888765554322 3344433 2222222222
Q ss_pred ccChHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 010666 292 CHSPMAIISLCLLAQTYHHASAVIQSLVEED 322 (504)
Q Consensus 292 chn~vs~lsLcLl~q~Ye~A~~li~~~~~~e 322 (504)
.+++- ..-|+.|+.++..|.+.|
T Consensus 476 ~~~~~--------~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 476 QSHDN--------NEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp GGCSS--------HHHHHHHHHHHHHHCC--
T ss_pred HcCCC--------HHHHHHHHHHHHHHCCCc
Confidence 22111 246899999999886654
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.55 E-value=4.7e-06 Score=90.47 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=137.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCC-Cc--hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSPS-VD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL 77 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~-vD--~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL 77 (504)
+|.+++..|+-.|-.++..+...+..++. +. ..++++.|+. +.++++.+|..++.+|..+....|..+.+++..+
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~- 324 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF- 324 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT-
T ss_pred HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh-
Confidence 36788899999998888777654422221 21 3567777774 4568999999999999999999888777776543
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 157 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~ 157 (504)
+ |+.+.+..||..|..+. .++. +.-+.+.+++.|..++.+.+.+.|..+..+|..+-.++|.. .+
T Consensus 325 ---~-~~~~d~~~Ir~~al~~L---~~l~----~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~ 389 (591)
T 2vgl_B 325 ---F-VKYNDPIYVKLEKLDIM---IRLA----SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AE 389 (591)
T ss_dssp ---S-CCTTSCHHHHHHHHHHH---HHTC----CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HH
T ss_pred ---e-eccCChHHHHHHHHHHH---HHHC----ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HH
Confidence 3 55444489999887543 3333 23357899999999999999999999999999999999744 45
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhHHHHHHHHHhhcc
Q 010666 158 DIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 158 ~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F~~fm~~LL~lF~ 204 (504)
..++.|++.|+|..+.|+..++..+.+|.. +.+.....+..|.+.+.
T Consensus 390 ~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~ 437 (591)
T 2vgl_B 390 RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD 437 (591)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHH
Confidence 678889999999999999998888777752 23223344455555554
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.54 E-value=4.1e-06 Score=88.67 Aligned_cols=261 Identities=16% Similarity=0.053 Sum_probs=178.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcC-CccccccHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLVPYYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~-~~~llpylp~iL~~ 79 (504)
|.+++++||..|-.+|..+-.+-... ..+--...++.|+..+...++.+|..++.=|..+..-. +..-.....+++..
T Consensus 182 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 261 (530)
T 1wa5_B 182 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 261 (530)
T ss_dssp HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHH
Confidence 45678899999988888876431100 00111356888899898888899988877777776554 33334556788999
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-hH
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-ND 158 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~-~~ 158 (504)
++..|.+++++++..|..+...+...-.+....+--..++..|...+.+.+..+|..|+.=|..+....+...-... .+
T Consensus 262 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 99999999999999999887766532100000000014567788888888999999998777777655554333222 47
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhHH-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh--HH-
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ER- 229 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a--E~- 229 (504)
.+|.|++.|.+++.+|...++..|+.++. +..... .++..|++++.....-....+...+.++|..-++ +.
T Consensus 342 ~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 421 (530)
T 1wa5_B 342 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421 (530)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999999999999999994 333333 3445667777665554556667788999876544 32
Q ss_pred -------HHHHHHHhhccccChHHHHHHHHHHHHHhcCchh
Q 010666 230 -------VYRELSTILEGEADLDFACTMVQALNLILLTSSE 263 (504)
Q Consensus 230 -------Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~E 263 (504)
+...|...|.. .|.+........|.+++-..+.
T Consensus 422 ~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 422 RYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhh
Confidence 34455555543 5777777888888887765543
No 23
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.52 E-value=5.6e-06 Score=80.05 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=123.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|+++.||..|-..|.++= -+..++.|+..+.+.++..|..++.-+..+-.- +. ..+.++..+.
T Consensus 32 L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~----~~~~l~~~L~ 96 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KK----CEDNVFNILN 96 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TT----THHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cc----cchHHHHHHH
Confidence 67899999988877777542 256778888888888888888887666544211 11 2455555555
Q ss_pred -ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 82 -PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 82 -p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
.++.|++++||..|..+...+-.... .....+++.|...+.+++..+|.+|..-|-.+-. +..+
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~ 161 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATI 161 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHH
Confidence 35677778888888777776543211 1123556667777777777777777666554322 1245
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhcc
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 240 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~ 240 (504)
|.|++.|.|++..|...+...+..++.++. ..+..|.+++..+.. +.| ...++-|... +.+.+...|...|.+
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~~~L~~~l~d~~~--~vR-~~A~~aL~~~-~~~~~~~~L~~~l~d 234 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYDNS---DIRDCFVEMLQDKNE--EVR-IEAIIGLSYR-KDKRVLSVLCDELKK 234 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---HHHHHHHHHTTCSCH--HHH-HHHHHHHHHT-TCGGGHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCcH---HHHHHHHHHhcCCCH--HHH-HHHHHHHHHh-CCHhhHHHHHHHhcC
Confidence 666677777777777777777777652222 233344444443333 223 1223333322 234455555555544
Q ss_pred ccChHHHHHHHHHHHHH
Q 010666 241 EADLDFACTMVQALNLI 257 (504)
Q Consensus 241 ~~Dl~F~~~mVq~Ln~i 257 (504)
.|++ ...++.|..+
T Consensus 235 -~~vr--~~a~~aL~~i 248 (280)
T 1oyz_A 235 -NTVY--DDIIEAAGEL 248 (280)
T ss_dssp -SSCC--HHHHHHHHHH
T ss_pred -ccHH--HHHHHHHHhc
Confidence 2332 2445555554
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.51 E-value=6e-06 Score=87.44 Aligned_cols=258 Identities=16% Similarity=0.066 Sum_probs=173.3
Q ss_pred CCCCC-cHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccc-cccHHHHH
Q 010666 1 MLSDS-SHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADIL 77 (504)
Q Consensus 1 mLsDp-n~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~l-lpylp~iL 77 (504)
+|.++ +++||..|-.+|..+...-... ..+--...++.|+..+.+.++.+|..|+.-|..+..-.+..- .-.-.+++
T Consensus 138 ~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 217 (530)
T 1wa5_B 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217 (530)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcH
Confidence 46776 8899998887887765421100 001113457888888888899999999888887775432100 00123677
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 157 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~ 157 (504)
..++..+.+++++++..|..+...|..--.......-...++..|...+.++++.+|..|+.=|..|-...+..+-...+
T Consensus 218 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~ 297 (530)
T 1wa5_B 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID 297 (530)
T ss_dssp HHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 88888888889999999988877765432111111223567888999999989999998887777777665554444443
Q ss_pred -HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhH-H-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCChH--
Q 010666 158 -DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF-R-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE-- 228 (504)
Q Consensus 158 -~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F-~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE-- 228 (504)
+++|.|+..|.+++++|...++..+..++.+.... . .++..|+.++..+..-....+...+.++|.. +++
T Consensus 298 ~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~ 376 (530)
T 1wa5_B 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQI 376 (530)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHH
Confidence 78999999999999999999999999999543222 2 3566778888776555555666688888753 222
Q ss_pred ------HHHHHHHHhhccccChHHHHHHHHHHHHHhcC
Q 010666 229 ------RVYRELSTILEGEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 229 ------~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
.+...|..+|. ..|.+.....+..|.++...
T Consensus 377 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 377 QAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHTTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Confidence 23445555554 35666666777777766553
No 25
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.47 E-value=5.8e-06 Score=75.97 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 112 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~ 112 (504)
+...+-++..+.++++.+|..++.++..+-. +..+..++.+|.|+++.+|..|..+...+ .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~----- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----G----- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C-----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----C-----
Confidence 3444444555555555555555555443211 23334444444455555555444443322 0
Q ss_pred CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 113 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 113 ~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
-...+..|...+.+++..+|.+|+..|-.+-. ...++.|++.|.|++++|...+...++.++
T Consensus 74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 01334444444444555555555544443311 123444444455555555555555555543
No 26
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.46 E-value=2.1e-06 Score=79.52 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=117.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|+++.||..|-..|.++-. +..++.|+..+..+++.+|..++.-+..+- + ++.+..+.
T Consensus 28 L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~-------~~~~~~L~ 87 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---D-------ERAVEPLI 87 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---C-------GGGHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---C-------HHHHHHHH
Confidence 789999999999888776421 467888999999999999999998877653 2 46677778
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
.+|.|++++||..|..+...+- -...+..|...+.+++..+|.+|..-|-.+-. +..++
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~ 146 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVE 146 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------HHHHH
Confidence 8889999999999998877541 13567888888889999999999888877632 24677
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
.|++.|.|+++.|...+.+.|..+..
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 88899999999999999999999963
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.46 E-value=5.1e-06 Score=84.58 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=171.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCc----hHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCcccccc-HHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVD----YGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPY-YAD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD----~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~~llpy-lp~ 75 (504)
|.++++++|..|-..|.+++..-.. +.++ -..+++.|+..+.+. ++.+|..+..=+..+..-.++..-.+ -++
T Consensus 29 l~s~~~~~r~~A~~~L~~l~~~~~~-~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 107 (450)
T 2jdq_A 29 IFSKSPEQQLSATQKFRKLLSKEPN-PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107 (450)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHSSSS-CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Confidence 3567889999998899888752211 1111 126899999999998 79999999887777766433221111 257
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhc-hhhhh
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRH-RTEVL 153 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s-~~e~TRlaaL~WL~~L~~k~-P~~~l 153 (504)
++..++..|.++++++|+.|..+...+...-.+....+--..++..|...+.+ .+...|..|+.-+..+.... |..-.
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 88888999999999999999988877654210000000002356777788874 68889999998888887654 54444
Q ss_pred hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhch-hhHH-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh
Q 010666 154 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-QHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 154 ~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~-~~F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a 227 (504)
....+.+|.|++.|.+++++|...+...++.++.+. .... ..+..|++++..+..-........+.++|..-+.
T Consensus 188 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence 556889999999999999999999999999999543 2211 2456677777655443334444467777654221
Q ss_pred -------HHHHHHHHHhhccccChHHHHHHHHHHHHHhcCc
Q 010666 228 -------ERVYRELSTILEGEADLDFACTMVQALNLILLTS 261 (504)
Q Consensus 228 -------E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs 261 (504)
..+...+...|.. .|.......+..|.++--..
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGN 307 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHCccHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC
Confidence 1245556666654 45555556666776665433
No 28
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.44 E-value=3e-06 Score=77.95 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=118.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
+|.|++++||..|-..|.++=. +..++.|+..+..+++.+|..++.-+..+ ++ ++.+..+
T Consensus 22 ~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~---~~-------~~~~~~L 81 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI---GD-------ERAVEPL 81 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-------GGGHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh---CC-------HHHHHHH
Confidence 3789999999999888876421 35688889999999999999999877665 22 4667777
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
...|.|++++||..|..+...+ .+ ...+..|...+.+++..+|.+|...|-.+-. ...+
T Consensus 82 ~~~l~d~~~~vr~~a~~aL~~~----~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~ 140 (201)
T 3ltj_A 82 IKALKDEDGWVRQSAAVALGQI----GD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAV 140 (201)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHH----CC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh----Cc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHH
Confidence 7888999999999999987764 11 3567888888899999999999998877632 3467
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+.|.+.|.|++++|...+...|..++
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999996
No 29
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.42 E-value=1e-05 Score=74.90 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
-++.++.|+..+.++++.+|..++..+..+-. +..+..++..|.|+++.+|..|..+...+-
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 46778999999999999999999999887532 577788888999999999999998876541
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 191 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~ 191 (504)
-...+..|...+.+++..+|.+|+..|-.+-. ...++.|.+.|.|++++|...+...|+.++.. .
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~- 143 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-R- 143 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-G-
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-H-
Confidence 14567888888999999999999998876632 34678899999999999999999999999642 2
Q ss_pred HHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHHHH
Q 010666 192 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLI 257 (504)
Q Consensus 192 F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~i 257 (504)
.+..|.+++..... ..| ...++-|+.. +.+.+...|...+.+ +|...-...++.|..+
T Consensus 144 ---~~~~L~~~l~d~~~--~vr-~~a~~aL~~~-~~~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 144 ---AVEPLIKALKDEDG--WVR-QSAADALGEI-GGERVRAAMEKLAET-GTGFARKVAVNYLETH 201 (211)
T ss_dssp ---GHHHHHHHTTCSSH--HHH-HHHHHHHHHH-CSHHHHHHHHHHHHH-CCHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHcCCCH--HHH-HHHHHHHHHh-CchhHHHHHHHHHhC-CCHHHHHHHHHHHHhc
Confidence 34455555654443 334 2234444443 456778888888764 5555555666666543
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.42 E-value=8e-06 Score=77.92 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=150.3
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc-CCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls-d~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
+++-+-+.+.+.+++-..|..++.-|..+++-.+...-..+.+++.++...+. |++..||..|..+...|.+.+... -
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-F 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-G
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-H
Confidence 44445577888899999999999999999998554344566899999999996 999999999999999999876431 1
Q ss_pred CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-h---
Q 010666 112 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-K--- 187 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~--- 187 (504)
.-....++..+...+.+.+..+|-+|..=+..+....+ .+.++|.++..|.|.+..|...++..+..+. .
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 12246788899999999999999999988888877543 4678999999999999999999999999964 2
Q ss_pred ---chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChH
Q 010666 188 ---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE 228 (504)
Q Consensus 188 ---~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE 228 (504)
...|+..+|..|.+.+.....-....+...+-.++..+|.+
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 23678899999999887555544445555677777777753
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.41 E-value=1.3e-06 Score=82.54 Aligned_cols=222 Identities=18% Similarity=0.135 Sum_probs=151.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccc-cHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llp-ylp~iL~~ 79 (504)
|.++++++|..|-.+|..++..-... ..+--...++.|+..+.+.++.+|..++.-|..+..-.+..--. .-.+.+..
T Consensus 21 L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 100 (252)
T 4db8_A 21 LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100 (252)
T ss_dssp HHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 45677888888888998877751100 01112357899999999999999999888777776532221111 12357888
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-hhH
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LND 158 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~-~~~ 158 (504)
++..|.++++++|+.|..+...+..--......+--...+..|...+.+++..+|..|+.=|..+-...+...-.. ..+
T Consensus 101 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 180 (252)
T 4db8_A 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 9999999999999999988776632100000000012467889999999999999999877777776555543332 257
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhHHH-----HHHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQ-----LVVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F~~-----fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
.+|.|++.|.+++++|...++..|..++. ++..... .+..|++++..+..-....+..++.+||.
T Consensus 181 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999984 3333322 45557777776655555566667776663
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.40 E-value=9.3e-06 Score=75.83 Aligned_cols=189 Identities=15% Similarity=0.093 Sum_probs=137.7
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc-HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCC
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF 113 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy-lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~ 113 (504)
.|+.|+..+.+.++.+|..++.-|..+..-.+...-.+ -.+++..++..|.++++++|..|..+...+...-.+....+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 47889999999999999999999988887665222222 23688899999999999999999988766542100000000
Q ss_pred ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhH
Q 010666 114 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF 192 (504)
Q Consensus 114 d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F 192 (504)
--...+..|...+.++++.+|..|+.=|..+-...|..... ...+.+|.|++.|.+++++|...++..+..++.+...-
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 01246788888888999999999987777777555543222 22478999999999999999999999999999533222
Q ss_pred -H-----HHHHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 193 -R-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 193 -~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
+ ..+..|++++.++..-....+...+.+||.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 1 366778888887766556666778888886
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.36 E-value=7.4e-06 Score=86.43 Aligned_cols=262 Identities=10% Similarity=0.019 Sum_probs=177.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC--CCchHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCcccccc-HHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPY-YADIL 77 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~--~vD~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llpy-lp~iL 77 (504)
|.++++++|..|-..|..++..-...+ .+--..+++.|+..+.+.+ +.+|..|+.-|..+..-.+..-... -.+.+
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 456788888888778877765322111 1112457899999999887 8999999888887776433221111 12678
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhchhhhhhch
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFL 156 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L-~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~ 156 (504)
..++..|.+++++||+.|..+...+...-......+--..++..|...+ .+.+..+|..|..=|..|....|.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 8888899999999999999998777532100000000013566777788 567788888888777777766666666677
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhH-H-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh---
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF-R-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--- 227 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F-~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a--- 227 (504)
.+.+|.|++.|.+++++|...++..|+.++.+.... . ..+..|+.++.....-....+-.++.+||..-+.
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999999999999999999543322 2 2455778888766554455555578888763221
Q ss_pred ----HHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchh
Q 010666 228 ----ERVYRELSTILEGEADLDFACTMVQALNLILLTSSE 263 (504)
Q Consensus 228 ----E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~E 263 (504)
..+...|..+|....+.......+.+|.++--..++
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~ 362 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH
Confidence 234566777776544666666777777777654443
No 34
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.35 E-value=1.8e-05 Score=86.66 Aligned_cols=190 Identities=17% Similarity=0.106 Sum_probs=137.8
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCC
Q 010666 34 RMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF 113 (504)
Q Consensus 34 ~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~ 113 (504)
..++.|...+.++++.+|..++.||..+....|..+.+| ...+++|+.|++..||..|.++... ++. .-
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~~l~d~d~~Ir~~alelL~~---l~~----~~ 381 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVDCLKDLDVSIKRRAMELSFA---LVN----GN 381 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHHGGGSSCHHHHHHHHHHHHH---HCC----SS
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHHHccCCChhHHHHHHHHHHH---Hcc----cc
Confidence 468899999999999999999999999999877655554 4578899999999999988886544 332 34
Q ss_pred ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhH
Q 010666 114 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHF 192 (504)
Q Consensus 114 d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F 192 (504)
+++.+++.|..++.+.+.+.|..+..||..+-.++|.... ..++.+++.|++..+.|...++..+.+|.. +++-.
T Consensus 382 nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~ 457 (618)
T 1w63_A 382 NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH 457 (618)
T ss_dssp STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH
Confidence 4789999999999989999999999999999999876554 445666666666666666666666666653 33344
Q ss_pred HHHHHHHHhhcccc---chhhhhhHHHHHHHHhhcC-------------ChHHHHHHHHHhhc
Q 010666 193 RQLVVFLVHNFRVD---NSLLEKRGALIIRRLCVLL-------------DAERVYRELSTILE 239 (504)
Q Consensus 193 ~~fm~~LL~lF~~d---r~LLe~Rg~lIIRqLC~~L-------------~aE~Iy~~La~iL~ 239 (504)
...+..|.+++..+ ..+. ..+..||-..|..+ +++.+...+..++.
T Consensus 458 ~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 519 (618)
T 1w63_A 458 AYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLI 519 (618)
T ss_dssp HHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHh
Confidence 45666666666542 3433 24555777777643 34556666666554
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.34 E-value=2.3e-05 Score=81.58 Aligned_cols=270 Identities=12% Similarity=0.040 Sum_probs=164.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCC--ccccccHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGG--DQLVPYYADIL 77 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~--~~llpylp~iL 77 (504)
|.+++++||..|-.+|..+-.+-... .-+..+..++.|+..+.+. +++.|..+..-+..+..-+. ..+. -.+.+
T Consensus 26 L~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~--~~g~i 103 (529)
T 1jdh_A 26 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF--KSGGI 103 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH--HTTHH
T ss_pred hCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH--HcCCH
Confidence 67889999999988888876432110 0123356788888888654 88999999999888643221 1111 23577
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHH------------------
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALH------------------ 139 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~------------------ 139 (504)
..++..|.+++++++..|..+...+...-.+....+--...+..|...+.+++...|..+..
T Consensus 104 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~ 183 (529)
T 1jdh_A 104 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78888899999999999998887765432110000001234566666666665555444321
Q ss_pred -----HHHHHHhhc-hhhh------------------hh-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---hhh
Q 010666 140 -----WISTLLNRH-RTEV------------------LH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD---LQH 191 (504)
Q Consensus 140 -----WL~~L~~k~-P~~~------------------l~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~---~~~ 191 (504)
.+..+.+.. +... -. ...+.++.|++.+.+++++++..++..+..++.+ ...
T Consensus 184 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 263 (529)
T 1jdh_A 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 263 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSC
T ss_pred CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHH
Confidence 111111111 0000 00 0136788888999999999999999999999842 223
Q ss_pred HHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCC--h-----HHHHHHHHHhhccc-cChHHHHHHHHHHHHHhcCchh
Q 010666 192 FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD--A-----ERVYRELSTILEGE-ADLDFACTMVQALNLILLTSSE 263 (504)
Q Consensus 192 F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~--a-----E~Iy~~La~iL~~~-~Dl~F~~~mVq~Ln~iLLTs~E 263 (504)
....+..|++++..+..-....+..++.+||..-+ . ......+.+.|... ++.+.....+..|-++--..++
T Consensus 264 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence 35677777777766655444556668888877421 0 12345566666542 3345555667777777555566
Q ss_pred HHHHHHHHHh
Q 010666 264 LSELRDLLKK 273 (504)
Q Consensus 264 l~~lR~~L~~ 273 (504)
-...|..+.+
T Consensus 344 ~~~~~~~i~~ 353 (529)
T 1jdh_A 344 AEMAQNAVRL 353 (529)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566666654
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.31 E-value=4.5e-05 Score=73.64 Aligned_cols=156 Identities=19% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~-~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
.|+++.||..|-.+|+.+ ... .-..+.++++|.. ....+++.+|..++.-+..+-.-.+ .+.+.++..+.
T Consensus 64 ~d~~~~vR~~A~~aL~~l----~~~-~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~ 134 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQI----KIC-KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQ 134 (280)
T ss_dssp TCSSHHHHHHHHHHHHHS----CCC-TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh----ccc-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHH
Confidence 455555555555444332 111 1123445555543 2344455555555555554432221 23455555555
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHH
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 161 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp 161 (504)
..+.|+++.||..|..+...+- + ...+..|...+.+++..+|.+|..-|..+- ......++
T Consensus 135 ~~l~d~~~~vR~~a~~aL~~~~----~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~~ 195 (280)
T 1oyz_A 135 ITAFDKSTNVRRATAFAISVIN----D-------KATIPLLINLLKDPNGDVRNWAAFAININK--------YDNSDIRD 195 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT--------CCCHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--------cCcHHHHH
Confidence 5566655555555555443210 0 123445555555555555555555544331 11223455
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
.|++.|.|++++|...+...|..++
T Consensus 196 ~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 196 CFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 5555555555556655555555554
No 37
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.7e-05 Score=77.75 Aligned_cols=149 Identities=9% Similarity=0.100 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc------ccccHHHHHHHHc-ccccCCchHHHHHHHHHHHHHHH
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ------LVPYYADILGAIL-PCISDKEEKIRVVARETNEELRA 104 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~------llpylp~iL~~lL-p~Lsd~~~eIR~~A~~~N~~Ll~ 104 (504)
|..+.+.+...+..++..++..++.=+..|+...+.. ...+.+.++.+++ +|++|+.+.+|+.|..+...++.
T Consensus 53 ~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 53 YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 6777888888999999999999999999999876543 2345667777766 68999999999998888766665
Q ss_pred hhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh---chhHHHHHHHHhcCCCCHHHHHHHHHH
Q 010666 105 IKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH---FLNDIFDTLLKALSDPSDEVVLLVLEV 181 (504)
Q Consensus 105 li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~---~~~~lfp~LLksLSD~sdeVv~~~L~L 181 (504)
.. .....+++.+...+.+.+..+|.+++.||..++..++.+..+ ....+++.+.+.|.|++.+|+..+.++
T Consensus 133 ~~------~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 133 LD------TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp TS------SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred hc------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 43 234677888999999999999999999999999998766543 455677788899999999999999999
Q ss_pred HHHHh
Q 010666 182 HACIA 186 (504)
Q Consensus 182 La~Is 186 (504)
+..+-
T Consensus 207 ~~~ly 211 (278)
T 4ffb_C 207 IVEIY 211 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.27 E-value=6e-06 Score=75.94 Aligned_cols=195 Identities=18% Similarity=0.148 Sum_probs=135.4
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccc-cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llp-ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
..+.+...+.|+.-+++.++.+|..++.-|..+..-.+...-. .-.+.+..++.+|.++++++|..|..+...+..--.
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 4456667788888899999999999999998887544432211 123678889999999999999999988776542100
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 108 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~-~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+....+--...+..|...+.+++..+|..|..=|..+-...+...-.. ..+.+|.|++.|.+++++|...++..+..++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 000000001356788888999999999999877777766555543222 3579999999999999999999999999999
Q ss_pred hchhhHH------HHHHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 187 KDLQHFR------QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 187 ~~~~~F~------~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
.+....+ ..+..|.++...+..-....+...+++||.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 6533322 345667777776666566677778888774
No 39
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.24 E-value=5e-06 Score=81.17 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=95.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCC-CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC---ccccccH-HHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYY-ADI 76 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~-vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~---~~llpyl-p~i 76 (504)
|.|..+.||.++..+|+.|.+.+..... -.++.+++.|...+.++++.+|..++.||..++.-.+ ..+.+|+ |.+
T Consensus 113 l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~i 192 (249)
T 2qk1_A 113 TKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEV 192 (249)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 5788999999999999999998743211 1277999999999999999999999999999999988 5688999 999
Q ss_pred HHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 77 LGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 77 L~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
+..+.+++.|++++||+.|.++...+++.+.+
T Consensus 193 ip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 193 VPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999854
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.18 E-value=0.0001 Score=80.25 Aligned_cols=272 Identities=13% Similarity=0.074 Sum_probs=153.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCccccccHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~~llpylp~iL~ 78 (504)
+|.|++++||..|-.+|..+-++-... ..++.+.+++.|+..+.+. ++..|..+..-|..+..-....-.-+-.+.+.
T Consensus 22 lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~ 101 (644)
T 2z6h_A 22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 101 (644)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHH
Confidence 367889999999998998886543211 1234467889999998765 78999999998886543322111112236788
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhh---hh--
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE---VL-- 153 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~---~l-- 153 (504)
.+..+|.+++++++..|..+...+...-......+--...+..|...+.+.+...+.+++.=|..+-...++. +.
T Consensus 102 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 8888999999999999999988776542110000001234566666666665555544432222222111110 00
Q ss_pred -------------------------------------h-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhch---hhH
Q 010666 154 -------------------------------------H-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL---QHF 192 (504)
Q Consensus 154 -------------------------------------~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~---~~F 192 (504)
. .-.+.++.|++.+.+.+.+++..++..+..++.+. ...
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 261 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM 261 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSC
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhh
Confidence 0 01245677777777777777777777777777321 223
Q ss_pred HHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh--H-----HHHHHHHHhhccccC-hHHHHHHHHHHHHHhcCchhH
Q 010666 193 RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--E-----RVYRELSTILEGEAD-LDFACTMVQALNLILLTSSEL 264 (504)
Q Consensus 193 ~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a--E-----~Iy~~La~iL~~~~D-l~F~~~mVq~Ln~iLLTs~El 264 (504)
...+..|++++..+..-....+..++.+||..=+. + .+...|...|....| -+.....+.+|-++--..++-
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~ 341 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 341 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH
Confidence 45666666666655443344455567777663111 1 134444455544322 344444555555553333443
Q ss_pred HHHHHHHH
Q 010666 265 SELRDLLK 272 (504)
Q Consensus 265 ~~lR~~L~ 272 (504)
...|..+.
T Consensus 342 ~~~q~~v~ 349 (644)
T 2z6h_A 342 EMAQNAVR 349 (644)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444343
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.16 E-value=2.5e-05 Score=83.10 Aligned_cols=297 Identities=15% Similarity=0.132 Sum_probs=187.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChH-----HHHHHHHHHHHHHhcCCc--ccccc
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEF-----TRLTAITWINEFVKLGGD--QLVPY 72 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~-----iRltaL~WI~efl~i~~~--~llpy 72 (504)
+|.+++.+||..|-.+|..+-.+-... ..+--...++.|+..+.+.+.. .+..+ .|.-.-+.-... .-+..
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a-~~~L~nl~~~~~~~~~~~~ 229 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL-TWTLSNLCRNKNPAPPLDA 229 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH-HHHHHHHHCCCSSCCCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH-HHHHHHHhhcccchhHHHH
Confidence 378899999999998998875432110 0011123467777777766532 22233 343333332222 22334
Q ss_pred HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch
Q 010666 73 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 149 (504)
Q Consensus 73 lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~---~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P 149 (504)
..+++..+..+|.+++++++..|..+...|.. ...+. +--..++..|...+.+.+..++..|+.-|..+....+
T Consensus 230 ~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~---~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTD---GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS---SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh---chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 57888889999999999999998888765532 11000 0012356778888999999999999988888766555
Q ss_pred hhhhhc-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh-HH-----HHHHHHHhhccccchhhhhhHHHHHHHHh
Q 010666 150 TEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH-FR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLC 222 (504)
Q Consensus 150 ~~~l~~-~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~-F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC 222 (504)
...... ..+.++.|.+.|++++++|...+...++.|+.+... -. .++..|+.++.+...-....+...|.+||
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 433222 346778888889999999999999999999853333 22 24455677777665545556677899998
Q ss_pred hcCChHHH--------HHHHHHhhccccChHHHHHHHHHHHHHhcCchh---HHHHHHHHHhhcCCcchhHHHHHHHHHh
Q 010666 223 VLLDAERV--------YRELSTILEGEADLDFACTMVQALNLILLTSSE---LSELRDLLKKSLVNPAGKDLFVSLYASW 291 (504)
Q Consensus 223 ~~L~aE~I--------y~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~E---l~~lR~~L~~~l~~~~~~~lF~~L~~sW 291 (504)
..-+.|.+ ...|.+.|. ..|.+.+......|.+||-.++. ...++..+.. .+|.+.-..| =
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee----~ggl~~ie~L---q 458 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE----CGGLDKIEAL---Q 458 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH----TTHHHHHHHG---G
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH----cCcHHHHHHH---H
Confidence 87666543 455666664 47888888889999988865443 2333333332 2222222222 1
Q ss_pred ccChHHHHHHHHHHhhHHHHHHHHHHh
Q 010666 292 CHSPMAIISLCLLAQTYHHASAVIQSL 318 (504)
Q Consensus 292 chn~vs~lsLcLl~q~Ye~A~~li~~~ 318 (504)
.|.. .+-|+.|+.||.+|
T Consensus 459 ~~~n---------~~i~~~A~~iie~y 476 (510)
T 3ul1_B 459 RHEN---------ESVYKASLNLIEKY 476 (510)
T ss_dssp GCSS---------HHHHHHHHHHHHHH
T ss_pred cCCC---------HHHHHHHHHHHHHH
Confidence 2221 14599999999876
No 42
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.15 E-value=3.9e-05 Score=76.33 Aligned_cols=164 Identities=14% Similarity=0.097 Sum_probs=129.4
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhcCC---cccccc-HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC
Q 010666 35 MAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 110 (504)
Q Consensus 35 iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~---~~llpy-lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~ 110 (504)
++.-+.-|+..++.-+-..++..+..++..-. -.+..| ...++..++--++|+.+.||+.+..+...+..+.
T Consensus 88 l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---- 163 (266)
T 2of3_A 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---- 163 (266)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC----
Confidence 45555667788899999999999999876543 346666 5788888888899999999999999987777653
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH---HHHHHhcCCCCHHHHHHHHHHHHHHh-
Q 010666 111 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF---DTLLKALSDPSDEVVLLVLEVHACIA- 186 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf---p~LLksLSD~sdeVv~~~L~LLa~Is- 186 (504)
....+...+..-+.+.|--+|..||+|+..+++.++.. -.+.+ |.+.+.++|++..|...|+..+.++-
T Consensus 164 ---~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 164 ---GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ---CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34778888888999999999999999999999999776 24568 99999999999999999999988875
Q ss_pred -hchhhHHHHHHHHHhhccccchhhhhh
Q 010666 187 -KDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 187 -~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
.++. +.+.+. ++=..+..+++.|
T Consensus 237 ~~Gd~-v~k~lg---~L~~~~~~~l~er 260 (266)
T 2of3_A 237 FEGDQ-MWKAAG---RMADKDKSLVEER 260 (266)
T ss_dssp HHTTH-HHHHHC---CCCHHHHHHHHHH
T ss_pred HhhHH-HHHHHh---cCCHHHHHHHHHH
Confidence 2333 333332 3444556677766
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.13 E-value=5e-06 Score=76.48 Aligned_cols=187 Identities=18% Similarity=0.087 Sum_probs=131.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccc-cHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILG 78 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llp-ylp~iL~ 78 (504)
+|.+++++||..|-.+|..+-..-... ..+--...++.|+..+.+.++.+|..++.=|..+..-.+...-. .-.+.+.
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHH
Confidence 477899999998888888876321100 01112257899999999999999998876666654322221111 1246788
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-hh
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LN 157 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~-~~ 157 (504)
.++..|.++++++|..|..+...+..--.+....+--...+..|...+.+++..+|..|+.=|..+....+...... ..
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 179 (210)
T 4db6_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC
Confidence 88899999999999999988777653100000000012467889999999999999999988888877655544333 34
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 158 DIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 158 ~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
+.++.|.+.+.+++++|...+...|..+++
T Consensus 180 g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874
No 44
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.11 E-value=0.00013 Score=82.09 Aligned_cols=267 Identities=12% Similarity=0.026 Sum_probs=161.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH-HHHHHHHccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPC 83 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl-p~iL~~lLp~ 83 (504)
.+.++|..|-.+|..+-.+-.....+--...|+.|+..+.+.++.+|..++.-|..+..-.+..--.+. .+.+..++..
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 477888888778877433211000111125799999999999999999999999998887654333332 5788888889
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhcCCCCC-CChHhHHHHHHHhcCCCCHHH-HHHHHHHHHHHHhhchhhhhhc-hhHHH
Q 010666 84 ISDKEEKIRVVARETNEELRAIKADPADG-FDVGPILSIATRQLSSEWEAT-RIEALHWISTLLNRHRTEVLHF-LNDIF 160 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~-~d~~~iv~vL~~~L~s~~e~T-RlaaL~WL~~L~~k~P~~~l~~-~~~lf 160 (504)
|.+++.+++..|..+...+..--.+.... .+ ...+..|...+.+.+... +.+|..=+..|. ..+...-.. ..+.+
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~g~l 362 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGM 362 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TSTTHHHHHHHTTHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh-cChHHHHHHHHhchH
Confidence 99999999998887766443100000000 11 133555666665544433 323332222222 233221111 24688
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhch---hhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh-------HHH
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIAKDL---QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA-------ERV 230 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is~~~---~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a-------E~I 230 (504)
|.|+..|.+.+++++..++..+..++.+. .....++..|+++++.+..-....+..++.+||..-+. +..
T Consensus 363 ~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~ 442 (780)
T 2z6g_A 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442 (780)
T ss_dssp HHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 99999999999999999999999998422 23467888888888766554445556688888774211 123
Q ss_pred HHHHHHhhccccCh-HHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010666 231 YRELSTILEGEADL-DFACTMVQALNLILLTSSELSELRDLLKK 273 (504)
Q Consensus 231 y~~La~iL~~~~Dl-~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 273 (504)
...|...|....+. +.....+.+|-+|--..++-...|..++.
T Consensus 443 i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 45555555543332 34445566666664444554444555543
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.03 E-value=2.3e-05 Score=73.87 Aligned_cols=188 Identities=18% Similarity=0.148 Sum_probs=130.9
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc-HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 36 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 36 I~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy-lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
.+-++..+++.++.+|..+...|..++.-.+...-.+ -.+.+..++..|.++++++|..|..+...+..--.+....+-
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4555556678999999999999977666533221111 246788899999999999999999887665421000000000
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhh-hhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhch-hhH
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-QHF 192 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~-l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~-~~F 192 (504)
-...+..|...+.++++.+|..|+.=|..|-...+... .-...+.+|.|++.|.+++++|...++..+..++.+. ..-
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 02367889999999999999999877777776666552 2234578999999999999999999999999999533 222
Q ss_pred H-----HHHHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 193 R-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 193 ~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
. ..+..|++++..+..-....+...+.+||.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 2 335667777776655555566667777774
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.00 E-value=0.00022 Score=75.94 Aligned_cols=261 Identities=16% Similarity=0.109 Sum_probs=167.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHH----HHHHHHHHHHHHhcCCcc--ccccH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFT----RLTAITWINEFVKLGGDQ--LVPYY 73 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~i----RltaL~WI~efl~i~~~~--llpyl 73 (504)
+|.+++.+||..|-.+|..+-.+=... ..+--...++.|+..+...+... -+....|.-.-+.-.... -....
T Consensus 170 LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 249 (529)
T 3tpo_A 170 LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV 249 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 377899999999988888775321100 00001234677777777665321 122344544444333322 23345
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
.+++..+..+|.+++++++..|+.+...+..--.+....+--..++..|...+.+++..++..|+.=|..+....+....
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 77888899999999999999888876655421100000000123567788888999999999998877777654443322
Q ss_pred h-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh-HHH-----HHHHHHhhccccchhhhhhHHHHHHHHhhcCC
Q 010666 154 H-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH-FRQ-----LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 154 ~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~-F~~-----fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~ 226 (504)
. ...+.++.|.+.|++++++|...+...|+.|+.+... ... ++..|+.++.++..-...-+...|.+||..-+
T Consensus 330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 2 2346788888999999999999999999999954333 222 34456777776655445556678899988766
Q ss_pred hHHH--------HHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666 227 AERV--------YRELSTILEGEADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 227 aE~I--------y~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
.|.+ ...|.+.|. ..|.+.+......|.+||-.++
T Consensus 410 ~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 410 VEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhH
Confidence 6644 345666664 4788888888899988875443
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.94 E-value=0.0073 Score=62.65 Aligned_cols=256 Identities=12% Similarity=0.048 Sum_probs=157.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc-HHHHHHHHccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPC 83 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy-lp~iL~~lLp~ 83 (504)
++.++|..|-.+|..+-++-.....+--...++.|+..+.+.++.+|..++.-|..+..-.+..--.. -.+.+..++..
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 46677777766776653221100011112578999999999999999999999988877654321111 25778888888
Q ss_pred ccCCchHHHHHHHHHHHHHH--------------------HhhcCCCC----------------CCCh------HhHHHH
Q 010666 84 ISDKEEKIRVVARETNEELR--------------------AIKADPAD----------------GFDV------GPILSI 121 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll--------------------~li~~~~~----------------~~d~------~~iv~v 121 (504)
|.+++++++..+..+...+. +++.+... .-+. ..++..
T Consensus 152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231 (529)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 88888888887755443221 22211100 0000 134667
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchh-hHH-----HH
Q 010666 122 ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-HFR-----QL 195 (504)
Q Consensus 122 L~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~-~F~-----~f 195 (504)
|...+.+.+...+..|+.=|..|-...|. .....+.+|.|++.|.+++++|...+...++.++.++. .-. ..
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 309 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChh--hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 77777777777777775444444433332 23456899999999999999999999999999985432 222 13
Q ss_pred HHHHHhhccc--cchhhhhhHHHHHHHHhhcCChH----------HHHHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666 196 VVFLVHNFRV--DNSLLEKRGALIIRRLCVLLDAE----------RVYRELSTILEGEADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 196 m~~LL~lF~~--dr~LLe~Rg~lIIRqLC~~L~aE----------~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
+..|++++.. +..-....+-..+++||..-+.. .....|...|..+.+.......+.+|.++-...+
T Consensus 310 v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 4555666643 22333444556788887653221 2345566777665555666666777777765443
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.90 E-value=0.0067 Score=65.92 Aligned_cols=257 Identities=11% Similarity=0.048 Sum_probs=163.3
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc-HHHHHHHHccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPC 83 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy-lp~iL~~lLp~ 83 (504)
++.++|..|-.+|..+-++-.....+--...++.|+..+.+.++.+|..++.=|..+..-.+.....+ -.+.+..++..
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 46777777766776554321100011112578999999999999999999999998887754433222 25778888888
Q ss_pred ccCCchHHHHHHHHHHHHH--------------------HHhhcCCCCC----------------CCh------HhHHHH
Q 010666 84 ISDKEEKIRVVARETNEEL--------------------RAIKADPADG----------------FDV------GPILSI 121 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~L--------------------l~li~~~~~~----------------~d~------~~iv~v 121 (504)
|.+++++++..|..+...+ ++++.+.... -+. ..++..
T Consensus 149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228 (644)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHH
T ss_pred HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 8888887777765444332 2233221100 000 124566
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHH------HH
Q 010666 122 ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QL 195 (504)
Q Consensus 122 L~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~------~f 195 (504)
|...+.+.+...|..|+.=|..|-...+. .....+.+|.|++.|.+++++|...+...++.++.+....+ ..
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~ 306 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 77777777777777776555555443333 24456899999999999999999999999999985432222 13
Q ss_pred HHHHHhhcccc--chhhhhhHHHHHHHHhhcCCh----------HHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchh
Q 010666 196 VVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDA----------ERVYRELSTILEGEADLDFACTMVQALNLILLTSSE 263 (504)
Q Consensus 196 m~~LL~lF~~d--r~LLe~Rg~lIIRqLC~~L~a----------E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~E 263 (504)
+..|++++... +.-....+...+++||..-+. ......|.+.|....+.......+.+|.++-...+.
T Consensus 307 v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 55666666542 233344556688888864331 135667777787666666666777888777655443
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.85 E-value=0.0018 Score=74.78 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=136.8
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc--cccccHHHHHHHHccc
Q 010666 6 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD--QLVPYYADILGAILPC 83 (504)
Q Consensus 6 n~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~--~llpylp~iL~~lLp~ 83 (504)
..+++.+|..+-+.+..++... .+. ..+++.|...+..+..- --|+.=+..+.+..+. .+-||+=.++..+|-.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEH-DVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSS-SCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccc-ccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 3567777764433333343322 333 37888888888876433 5566666666654432 5679988899999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhchhhhhhchhHHHHH
Q 010666 84 ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 162 (504)
Q Consensus 84 Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~-~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~ 162 (504)
.+|....||++|..+-..+.+.+.. .-+..++..|...+.+. .=+++++||+-+..|.+.+|..+-..+..++|.
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNP----VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPV 179 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcc
Confidence 9999999999999999999998844 22477888888888644 578999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 163 LLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 163 LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+-.++-|.-+||-..+...+.++|
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred hHhhcccCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999988
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.85 E-value=0.0004 Score=76.28 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc-CCchHHHHHHHHHHHHHHHhhcCCC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPA 110 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls-d~~~eIR~~A~~~N~~Ll~li~~~~ 110 (504)
....++.|...+.++++.+|..++.||..++...|. .+++......++.||. |++..||..|..+ +++++.+
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~l---L~~l~~~-- 399 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDL---LYAMCDR-- 399 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHH---HHHHCCH--
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHH---HHHHcCh--
Confidence 345788899999999999999999999999988753 2356677788899999 9999999888877 4444432
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 111 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
-+++.+++.|..++.+.+.+.|..+..||..+..++|.+.-.+.+.++
T Consensus 400 --~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll 447 (621)
T 2vgl_A 400 --SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTIL 447 (621)
T ss_dssp --HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 357899999999999888999999999999999999876655555443
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.78 E-value=0.0021 Score=72.26 Aligned_cols=258 Identities=10% Similarity=0.046 Sum_probs=163.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhcCCc--cccccHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGD--QLVPYYADIL 77 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~-e~~iRltaL~WI~efl~i~~~--~llpylp~iL 77 (504)
|.+++.+||..|-.+|..+-++-... ..++.+.+++.|+..+.+. ++.+|..|+.-|..+...... .+. -.+.+
T Consensus 159 L~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~--~~g~I 236 (780)
T 2z6g_A 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF--KSGGI 236 (780)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH--HTTHH
T ss_pred HCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH--HcCCH
Confidence 45667778877777777765432110 1223467899999888754 889999999988885443211 122 23678
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-ch
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FL 156 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~ 156 (504)
..++..|.++++++|..|..+...+...-.+....+--..++..|...+.+++...+..|+.=+..+-...++.-.. ..
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~ 316 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 316 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 88889999999999999999988876542110000101246778888888888777766654443333222222111 12
Q ss_pred hHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhhchhhHHHH-----HHHHHhhccccchhhhhhHHHHHHHHhhcCC----
Q 010666 157 NDIFDTLLKALSDPSDEVV-LLVLEVHACIAKDLQHFRQL-----VVFLVHNFRVDNSLLEKRGALIIRRLCVLLD---- 226 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv-~~~L~LLa~Is~~~~~F~~f-----m~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~---- 226 (504)
.+.++.|++.|.+.+++++ ..+..++..++....+...+ +..|+.++.....-.......++++||..-.
T Consensus 317 ~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 396 (780)
T 2z6g_A 317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 396 (780)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSC
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhh
Confidence 3568888888888776554 46678888888666565554 4667777776544344455668888886542
Q ss_pred hHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666 227 AERVYRELSTILEGEADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 227 aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
-+.+...|...|.. .|.+.....+..|.++--..+
T Consensus 397 ~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 397 MEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp CHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH
T ss_pred hhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence 24566777776653 566665666777766655443
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.58 E-value=0.0066 Score=64.38 Aligned_cols=257 Identities=13% Similarity=0.079 Sum_probs=145.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCccccc-cHHHHHH
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVP-YYADILG 78 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD---~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llp-ylp~iL~ 78 (504)
..+++.+-.|-..+.++|..= .+|.+| =...||.|++.+...+ +.+|..|..=|..+..-.++.--. .=.+.+.
T Consensus 68 s~d~~~q~~a~~~~rklls~e-~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp 146 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 146 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHTCS-SCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC-CCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Confidence 345666665656777776432 233333 2357899999997654 788887765555554433321111 1135677
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHH----HHHHHHHHHHHHh--hchhhh
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEAT----RIEALHWISTLLN--RHRTEV 152 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~T----RlaaL~WL~~L~~--k~P~~~ 152 (504)
.+..+|.+++++||+.|..+...+..--.+....+--...+..|...+.+.+..+ -+...-|...-+. +.|..-
T Consensus 147 ~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 226 (510)
T 3ul1_B 147 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 226 (510)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhH
Confidence 8888899999999999999877664210000000000123455666665544322 1122234333332 334444
Q ss_pred hhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHH------HHHHHHhhccccchhhhhhHHHHHHHHhhcCC
Q 010666 153 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQ------LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 153 l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~------fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~ 226 (504)
+....+.+|.|.+.|.+++++|...+...|+.++.+..+-.. .+..|++++..+..-....+...+.++|..-+
T Consensus 227 ~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 227 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 456678999999999999999999999999999964443322 34556777776655444444556777664322
Q ss_pred hHH-------HHHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666 227 AER-------VYRELSTILEGEADLDFACTMVQALNLILLTSS 262 (504)
Q Consensus 227 aE~-------Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~ 262 (504)
..+ +...|...|. ..+.+.....+-+|.+|--..+
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcH
Confidence 111 1111222222 3444554555666666654444
No 53
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.48 E-value=0.031 Score=63.05 Aligned_cols=168 Identities=9% Similarity=0.112 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHc----CCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 32 YGRMAEILVQRA----ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 32 ~~~iI~ILv~~l----~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
++.+.+.+...+ .+.+-..+-.++.++..+.+-.....-++++.++. +++.+.++++.||..|..+.+.+-+.+.
T Consensus 443 l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 443 LSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp HHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344555555555 55566778888989998888877777789999999 5567777788899999999999888775
Q ss_pred CCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Q 010666 108 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACI 185 (504)
Q Consensus 108 ~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD--~sdeVv~~~L~LLa~I 185 (504)
... -.+..+++.+...+.+ ..+|.+|-.=+..|.+.++..+.+|.+.++..+.+.+.. -+.++....++-++.+
T Consensus 522 ~~~--~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 522 DHP--VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp HCH--HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hCH--HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 422 2356788888888865 556666666677778889999999999999999888774 3567787888888777
Q ss_pred hh------chhhHHHHHHHHHhhcc
Q 010666 186 AK------DLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 186 s~------~~~~F~~fm~~LL~lF~ 204 (504)
.. -..|+..+|.-+...+.
T Consensus 598 ~~~~~~~~~~~~~~~l~~~l~~~l~ 622 (963)
T 2x19_B 598 LSALQVEEILKNLHSLISPYIQQLE 622 (963)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 62 23567777777666554
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.34 E-value=0.011 Score=62.73 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=141.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCcc-ccccHHHHHHH
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQ-LVPYYADILGA 79 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD---~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~-llpylp~iL~~ 79 (504)
++++.+-.|-..+..+|.. ..++.+| -..+||.|+..+...+ +.+|..|..=|..+..-.+.. -.-.-.+.+..
T Consensus 88 ~d~~~q~~a~~~~rklLs~-~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~ 166 (529)
T 3tpo_A 88 NNLESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 166 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTS-SSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-CCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 4455555554566665532 1223333 2468999999997554 778887765455554433322 11223467778
Q ss_pred HcccccCCchHHHHHHHHHHHHHHH--------------------hhcCC------------------------CCCCC-
Q 010666 80 ILPCISDKEEKIRVVARETNEELRA--------------------IKADP------------------------ADGFD- 114 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~--------------------li~~~------------------------~~~~d- 114 (504)
+..+|.++++++++.|..+...+.. ++... ....+
T Consensus 167 Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 246 (529)
T 3tpo_A 167 FISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH
Confidence 8889999999999999888665532 11110 01122
Q ss_pred --hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhh
Q 010666 115 --VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 191 (504)
Q Consensus 115 --~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~ 191 (504)
...++.+|...+.++++.++..|..=|..+....++..-. ...+.+|.|...|.+++..|...++..+..|+..+..
T Consensus 247 ~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 326 (529)
T 3tpo_A 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 326 (529)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH
Confidence 2456788899999999999888775555555544433222 2357899999999999999999999999999864444
Q ss_pred HHHH------HHHHHhhccccchhhhhhHHHHHHHHhhc
Q 010666 192 FRQL------VVFLVHNFRVDNSLLEKRGALIIRRLCVL 224 (504)
Q Consensus 192 F~~f------m~~LL~lF~~dr~LLe~Rg~lIIRqLC~~ 224 (504)
.... +..|+.++.+...-...-+..++.+||..
T Consensus 327 ~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 327 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 3332 33456677666555555667788888763
No 55
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.33 E-value=0.036 Score=62.85 Aligned_cols=166 Identities=11% Similarity=0.060 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcCC-----CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccccc--CCchHHHHHHHHHHHHHHHh
Q 010666 33 GRMAEILVQRAAS-----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 33 ~~iI~ILv~~l~s-----~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Ls--d~~~eIR~~A~~~N~~Ll~l 105 (504)
+.+.+.+...+.+ .+-..+-.++-=+..+.+-.+...-+++|.++. +++.+. |+++.||..|..+.+.+-+.
T Consensus 458 ~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~ 536 (971)
T 2x1g_F 458 EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNW 536 (971)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence 4444444444432 333445555555666555555566689999999 777777 56899999999999999988
Q ss_pred hcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 010666 106 KADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHA 183 (504)
Q Consensus 106 i~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD--~sdeVv~~~L~LLa 183 (504)
+.+.. -.+..+++.+...+ + ..++.+|-.=+..|.+..+..+.+|.+.++..+++.+.. .+.++....++-++
T Consensus 537 l~~~~--~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~ 611 (971)
T 2x1g_F 537 LMENP--AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIG 611 (971)
T ss_dssp HC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred HhcCH--HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 87533 34788888888877 3 445666666667788889999999999999999988887 35778888888888
Q ss_pred HHhhc------hhhHHHHHHHHHhhcc
Q 010666 184 CIAKD------LQHFRQLVVFLVHNFR 204 (504)
Q Consensus 184 ~Is~~------~~~F~~fm~~LL~lF~ 204 (504)
.|... ..||..++..+++.+.
T Consensus 612 ~i~~~~~~~~~~~~~~~ll~~l~~~l~ 638 (971)
T 2x1g_F 612 KLMSLLRPEEIPKYLDIIVSPCFEELQ 638 (971)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 87632 4667777666665443
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.33 E-value=0.001 Score=66.64 Aligned_cols=224 Identities=14% Similarity=0.052 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHhcCCc---cccccHHHHHHHHccc
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPC 83 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~-~l~s~e~~iRltaL~WI~efl~i~~~---~llpylp~iL~~lLp~ 83 (504)
+-|..|-..|.++++.+.....+--...++.|+. .+.++++.+|..|+.=|..+..-.+. .++.. +.+..++.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHH
Confidence 4555555677777776653322222345788888 88999999999988878777765432 23322 566667777
Q ss_pred cc-CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-hHHHH
Q 010666 84 IS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFD 161 (504)
Q Consensus 84 Ls-d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~-~~lfp 161 (504)
|. ++++++|+.|..+...+.+--......+--...+..|...+.+.+..+|..|..=|..|....|+..-... .+.+|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 76 45788999998887776531100000111123577888888888888988887666666666665443333 47999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHHHhhcc
Q 010666 162 TLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 240 (504)
Q Consensus 162 ~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~ 240 (504)
.|.+.|++++.+|+..++..+..|..+...-..-....- ..=..+|+.+ +..|...=..+.+|....++++.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~---~~l~~lL~~~----~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE---LGLEELLRHR----CQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG---GCHHHHHHHH----HHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccH---HHHHHHHHHH----HHHccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865222111111000 0002344443 34433222236778777777754
No 57
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00071 Score=66.07 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc---ccHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV---PYYADILG 78 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll---pylp~iL~ 78 (504)
|+|+.+.+|..|-.++..+... ......+++.+..-+.+.+|-+|..++.||..++.-.|...+ ++++.++.
T Consensus 112 l~~~k~~~~~~a~~~l~~~~~~-----~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~ 186 (278)
T 4ffb_C 112 LTSSRATTKTQSMSCILSLCGL-----DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLK 186 (278)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHT-----SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGG
T ss_pred hcCccHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHH
Confidence 6888888988887777776642 223466788999999999999999999999999987665544 36788899
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
.+.++++|.+++||+.|.++-..+++.+.+
T Consensus 187 ~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 187 HVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999998753
No 58
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.21 E-value=0.011 Score=67.14 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=144.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 4 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 4 Dpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
|+++-||..|-.++++|=+-+...+ -.++.+++.|+..+. +.++..|..=+..|.+-++..+.||++.|+..++.+
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~ 592 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHAS 592 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 7889999999999999998887553 458889999998883 667888888888899888899999999999999999
Q ss_pred ccCC--chHHHHHHHHHHHHHHHhhcCCCCC-CChHhHHHHHHH----hcCCC--CHHHHHHHHHHHHHHHhhc------
Q 010666 84 ISDK--EEKIRVVARETNEELRAIKADPADG-FDVGPILSIATR----QLSSE--WEATRIEALHWISTLLNRH------ 148 (504)
Q Consensus 84 Lsd~--~~eIR~~A~~~N~~Ll~li~~~~~~-~d~~~iv~vL~~----~L~s~--~e~TRlaaL~WL~~L~~k~------ 148 (504)
+..+ +.+.+..+-++-..+...+.. .+. -.+..++..+.. ..... ++..+..+.+++..|-...
T Consensus 593 l~~~~~~~~~~~~~~~ai~~i~~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 593 LNTGRMKNSDSVRLMFSIGKLMSLLRP-EEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHSTTSCHHHHHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HcCCCCChHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 9984 456777777776666654421 110 112333333333 33332 4445566666665543221
Q ss_pred ----------hhhhhhchhHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh-----chhhHHHHHHHHHhhccccchhhh
Q 010666 149 ----------RTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDNSLLE 211 (504)
Q Consensus 149 ----------P~~~l~~~~~lfp~LLksLSD--~sdeVv~~~L~LLa~Is~-----~~~~F~~fm~~LL~lF~~dr~LLe 211 (504)
+..+.++.+.++|.++..+.+ .+++|++.+..++..++. -..|+..++..++.-|.+.+. .
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~--~ 749 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC--A 749 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC--H
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc--h
Confidence 334567788888988887754 367999999999999762 246788888888888877542 1
Q ss_pred hhHHHHHHHHhhcCCh
Q 010666 212 KRGALIIRRLCVLLDA 227 (504)
Q Consensus 212 ~Rg~lIIRqLC~~L~a 227 (504)
+ .--++-.++..++.
T Consensus 750 ~-~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 750 P-TLEISKTAIVMFFK 764 (971)
T ss_dssp H-HHHHHHHHHTTCCC
T ss_pred H-HHHHHHHHHHHhCC
Confidence 1 11255555555655
No 59
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.15 E-value=0.097 Score=56.00 Aligned_cols=233 Identities=17% Similarity=0.152 Sum_probs=158.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 84 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~L 84 (504)
++...+..|.+.+.+|-+..+.- -.+=|+-++.-|...|..||..|+ +.+-.++.+ .+++++.+++.++|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qai---k~Lp~~ck~---~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAI---KELPQFATG---ENLPRVADILTQLL 109 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHH---HHGGGGCCT---TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHH---HhhHHHhhh---hhhhhHHHHHHHHH
Confidence 34677888888999998877632 134578888999999999999875 566677776 67888888888888
Q ss_pred cCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-ch-hHHHHH
Q 010666 85 SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FL-NDIFDT 162 (504)
Q Consensus 85 sd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~-~~lfp~ 162 (504)
.-.++.-.. .|+..|+.++. .|-..++..+..|+.++.|.+|..+|..|..=...-|.+++. -. +-+...
T Consensus 110 qtdd~~E~~---~V~~sL~sllk-----~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 QTDDSAEFN---LVNNALLSIFK-----MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp TCCCHHHHH---HHHHHHHHHHH-----HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred hccchHHHH---HHHHHHHHHHh-----cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 876655444 44455555552 355678888888888788999999999998877776666553 11 235556
Q ss_pred HHHhcCCCCHHHHHHHHHHHH-------------------HHh--------hchhhHHHHHHHH---Hhhccccchhhhh
Q 010666 163 LLKALSDPSDEVVLLVLEVHA-------------------CIA--------KDLQHFRQLVVFL---VHNFRVDNSLLEK 212 (504)
Q Consensus 163 LLksLSD~sdeVv~~~L~LLa-------------------~Is--------~~~~~F~~fm~~L---L~lF~~dr~LLe~ 212 (504)
+.|.|.|-+.+=..+.|++|. +.+ ++.+++++++..+ +-+|+....
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~---- 257 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVH---- 257 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBC----
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCC----
Confidence 777777776544444444442 222 2456677776666 678876643
Q ss_pred hHHHHHHHHhhcC----C---h--------HHHHHHHHHhhccccChHHHHHHHHHHHHHhcC
Q 010666 213 RGALIIRRLCVLL----D---A--------ERVYRELSTILEGEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 213 Rg~lIIRqLC~~L----~---a--------E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
++-.+-.+|..+ + . =++.+.+|++-.--.+.+.+..++..+-..|+.
T Consensus 258 -StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ 319 (507)
T 3u0r_A 258 -STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLE 319 (507)
T ss_dssp -CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHH
Confidence 222444444432 1 1 167888888877767788888888887776664
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.15 E-value=0.0047 Score=71.45 Aligned_cols=187 Identities=11% Similarity=0.130 Sum_probs=151.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
++|-+..||++|+..++.+.+.+.. .-...++|.|...+.+.. =..+..|+.-|..+..-++..+-..+|+++..+
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 5899999999999999999998853 234888999999887664 578999999999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-----c
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-----F 155 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-----~ 155 (504)
-.|+-|..+||+++|.++-..+-..|. +.|+.+.+..|+..+.+..+. -- .+|......+.. -
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~----n~d~~~~~~~~~~~~~~p~~~-~~-------~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVD----NKDIERFIPSLIQCIADPTEV-PE-------TVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCC----CTTTGGGHHHHHHHHHCTTHH-HH-------HHHHHTTCCCCSCCCHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCC----CcchhhhHHHHHHHhcChhhh-HH-------HHHHhhcCeeEeeecchh
Confidence 999999999999999999999888874 478899999999888777542 11 123333333332 2
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hchhhHHHHHHHHHhhc
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNF 203 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is---~~~~~F~~fm~~LL~lF 203 (504)
..-+.|.|.+.|.+.+..+-.++--++.++| .|...-..|+-.|+--.
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGL 299 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence 3357889999999999999999999999998 57777777777765433
No 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.94 E-value=0.048 Score=62.14 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcC------CCChHHHHHHHHHHHHHHhcC---C---c---ccccc
Q 010666 8 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA------SPDEFTRLTAITWINEFVKLG---G---D---QLVPY 72 (504)
Q Consensus 8 eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~------s~e~~iRltaL~WI~efl~i~---~---~---~llpy 72 (504)
.+|.+|..+|+.+.+..++. -++.+++.+.+.+. +.+-..|-.|+.-+..+..-. . . ..+.+
T Consensus 376 s~R~aa~~~L~~l~~~~~~~---v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVL---VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 58888988888888765421 13445555544444 344456777887777775421 1 1 11233
Q ss_pred HHHHHHHHcccccCC---chHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--
Q 010666 73 YADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-- 147 (504)
Q Consensus 73 lp~iL~~lLp~Lsd~---~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k-- 147 (504)
.+-+...++|.|.|+ ++-||..|+.+.+.+...+.. -.+..+++.+..++.+++..+|.+|-.=+..|.+.
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 333456788999888 899999999999988776521 23788899999999988888888888777777663
Q ss_pred ---------chhhhhhchhHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHhh--chhhHHHHHHHHHhhcc
Q 010666 148 ---------HRTEVLHFLNDIFDTLLKALSDP--------SDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 148 ---------~P~~~l~~~~~lfp~LLksLSD~--------sdeVv~~~L~LLa~Is~--~~~~F~~fm~~LL~lF~ 204 (504)
.+..+.+|.+.++..|++.+... ..+.+..++.-+..... -..|+..+|..|...+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 25668899999999999988774 22333333333322222 24688888888877665
No 62
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.92 E-value=0.24 Score=56.24 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=125.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhcCC--cccccc----HHHHHHHHcccccCC--chHHHHHHHHHHHHHHHhhc
Q 010666 36 AEILVQRAASPDEFTRLTAITWINEFVKLGG--DQLVPY----YADILGAILPCISDK--EEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 36 I~ILv~~l~s~e~~iRltaL~WI~efl~i~~--~~llpy----lp~iL~~lLp~Lsd~--~~eIR~~A~~~N~~Ll~li~ 107 (504)
++.|+.-+.+.++.+|..|+.=|-.+-..++ ...-++ +..++..+.+.|.++ ++++++.|......|-.
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~--- 408 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL--- 408 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT---
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---
Confidence 3999999998888999877774444433222 122223 567888888899988 88899999888765531
Q ss_pred CCCCC---CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch-----------------------------------
Q 010666 108 DPADG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR----------------------------------- 149 (504)
Q Consensus 108 ~~~~~---~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P----------------------------------- 149 (504)
++... ..-...+..|...+.+++...+..|+.=|..+-.-++
T Consensus 409 ~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~ 488 (810)
T 3now_A 409 DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488 (810)
T ss_dssp SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence 10000 0013456666666666666666666655555554221
Q ss_pred hhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHH------HHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 150 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQL------VVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 150 ~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~f------m~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
+.+. -.+..|.|...|+.++++|...+...|..|+.+++ .+.. +.-|+.+++++..-...-....+.+||.
T Consensus 489 ~~Vv--eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 489 TVLA--NEGITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHH--HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 1111 22689999999999999999999999999997554 4433 3446777776654445556668889998
Q ss_pred cCChHHHH
Q 010666 224 LLDAERVY 231 (504)
Q Consensus 224 ~L~aE~Iy 231 (504)
.-+++.+|
T Consensus 566 ~~~p~~~~ 573 (810)
T 3now_A 566 TINPEVSF 573 (810)
T ss_dssp HSCHHHHT
T ss_pred CCChhhhh
Confidence 88876654
No 63
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.79 E-value=0.0092 Score=68.04 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=132.7
Q ss_pred CCC---cHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-----------CCcc
Q 010666 3 SDS---SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL-----------GGDQ 68 (504)
Q Consensus 3 sDp---n~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i-----------~~~~ 68 (504)
.|+ ++-||..|-.++++|=..+. .-.+..+++.++.++..+++.+|..|..=+..|++. ++..
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 466 88999999999999987762 235889999999999988889999999999999875 3466
Q ss_pred ccccHHHHHHHHcccccCCc---hH--HHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC-----CCCHHHHHHHH
Q 010666 69 LVPYYADILGAILPCISDKE---EK--IRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-----SEWEATRIEAL 138 (504)
Q Consensus 69 llpylp~iL~~lLp~Lsd~~---~e--IR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~-----s~~e~TRlaaL 138 (504)
+.||++.++..++..+.... ++ ..+.+.++...+.....+. -.-.+..++..|...+. .++...+..++
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 620 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTF 620 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999998751 11 2234444444444444321 11124455555444432 22444455566
Q ss_pred HHHHHHHhh-chhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----hhhHHHHHHHHH
Q 010666 139 HWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD----LQHFRQLVVFLV 200 (504)
Q Consensus 139 ~WL~~L~~k-~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~----~~~F~~fm~~LL 200 (504)
+=|..+... .|+.+..+.+.++|.+...|.....++...++++++.+... ..|+..+...++
T Consensus 621 e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 621 ESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHc
Confidence 666666665 66778888899999999988777667777788887776532 234444444454
No 64
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.77 E-value=0.052 Score=54.20 Aligned_cols=198 Identities=16% Similarity=0.145 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHH---------HHHHHHHHHHHHhhcCCCCCCCh--HhHHHHH
Q 010666 54 AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR---------VVARETNEELRAIKADPADGFDV--GPILSIA 122 (504)
Q Consensus 54 aL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR---------~~A~~~N~~Ll~li~~~~~~~d~--~~iv~vL 122 (504)
-+.|+.+++.= . +=-++.+..++..|.++.++++ +.-..+...|..++.+.....++ ...+..|
T Consensus 12 ~~~~~~~~~~~-~----~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~L 86 (296)
T 1xqr_A 12 GLVPRGSHMRG-Q----RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLL 86 (296)
T ss_dssp --------CCS-C----HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHcC-C----CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHH
Confidence 46799888652 1 2235666666666777632111 11222344555555432211122 2345677
Q ss_pred HH-hcCCCCHHHHHHHHHHHHHHHhhchh---hhhhchhHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh-chhh---HH
Q 010666 123 TR-QLSSEWEATRIEALHWISTLLNRHRT---EVLHFLNDIFDTLLKALS-DPSDEVVLLVLEVHACIAK-DLQH---FR 193 (504)
Q Consensus 123 ~~-~L~s~~e~TRlaaL~WL~~L~~k~P~---~~l~~~~~lfp~LLksLS-D~sdeVv~~~L~LLa~Is~-~~~~---F~ 193 (504)
.. .|.++++..|..|..=|-.+....|. .++ -.+.+|.|++.|+ +++++|..+++-.|+.|+. +... |.
T Consensus 87 v~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv--~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~ 164 (296)
T 1xqr_A 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL--GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL 164 (296)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH--HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 88 88899999999888777777766653 233 2378899999998 5689999999999999984 3332 32
Q ss_pred --HHHHHHHhhccccchhhhhhHHHHHHHHhhcCChH--------HHHHHHHHhhccccChHHHHHHHHHHHHHhcC
Q 010666 194 --QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--------RVYRELSTILEGEADLDFACTMVQALNLILLT 260 (504)
Q Consensus 194 --~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE--------~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLT 260 (504)
..+.-|+.+++++..-+..+....|.+||.. ++| .+.+.|.+.|.. .|.+........|.+|+-.
T Consensus 165 ~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 165 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcC-CChhHHHHHHHHHHHHHhC
Confidence 2455677777776666778888899999876 442 356667777654 4677777777888766544
No 65
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.56 E-value=0.093 Score=59.17 Aligned_cols=224 Identities=10% Similarity=0.083 Sum_probs=137.3
Q ss_pred chHHHHHHHHHHcCC-----CChHHHHHHHHHHHHHHh-cC----------CccccccHHHHHHHHcccccCCch-----
Q 010666 31 DYGRMAEILVQRAAS-----PDEFTRLTAITWINEFVK-LG----------GDQLVPYYADILGAILPCISDKEE----- 89 (504)
Q Consensus 31 D~~~iI~ILv~~l~s-----~e~~iRltaL~WI~efl~-i~----------~~~llpylp~iL~~lLp~Lsd~~~----- 89 (504)
++..+++.++..... .++.+...++.....+.+ +. ...+-|+++.++.++++.+..++.
T Consensus 332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~ 411 (963)
T 2x19_B 332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411 (963)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 456777878776653 355556666654444443 21 123458999999999998865432
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 90 ----------KIRVVARETNEELRAIKADPADGFDVGPILSIATRQL----SSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 90 ----------eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L----~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
+.|..+..+...+.....+ --+..+++.+...+ .+.+-..|-+++-++-.+-+..+.+.-++
T Consensus 412 ~~~de~~~~~~~r~~~~~~L~~~~~~~~~----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~ 487 (963)
T 2x19_B 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGA----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDV 487 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHccH----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHH
Confidence 1244444444444433321 01233444555555 55566778899988888888777666667
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh----
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA---- 227 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is----~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a---- 227 (504)
.+.+++. +..+.++.+.|...++.++.+.+ .+.+|+..++..++..+.+ +-...++..-++++|...+.
T Consensus 488 l~~l~~~-l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p 564 (963)
T 2x19_B 488 VPGLIGL-IPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPP 564 (963)
T ss_dssp HHHHHHH-GGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTT
T ss_pred HHHHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777774 45677778889999999999987 3567889999999888854 33355666677777764322
Q ss_pred --HHHHHHHHHhhccc-cChHHHHHHHHHHHHHhcCc
Q 010666 228 --ERVYRELSTILEGE-ADLDFACTMVQALNLILLTS 261 (504)
Q Consensus 228 --E~Iy~~La~iL~~~-~Dl~F~~~mVq~Ln~iLLTs 261 (504)
+.|...+..++.+. .+.+--..++..+..++-+.
T Consensus 565 ~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 565 YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 45555555555431 12222333455555555443
No 66
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.54 E-value=0.062 Score=53.28 Aligned_cols=144 Identities=8% Similarity=0.035 Sum_probs=114.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CC-Cc--hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PS-VD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL 77 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~-vD--~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL 77 (504)
+.|+|..|-..+=..|..++.-.... +. .+ ...++|.|+++++.+.+..|-.+-.=+..+..++|. +.+.
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~ 169 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMT 169 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHH
Confidence 45888888887777888887777542 22 34 368999999999999999999888888888877544 4466
Q ss_pred HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHH---HHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh
Q 010666 78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPIL---SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 154 (504)
Q Consensus 78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv---~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~ 154 (504)
+.++..+.+.+...|..+..+...+...-.- . ....+ ..+..++.+.+..+|-||++=+..+|...++++..
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~---~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGI---S--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS---G--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCC---C--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6677788889999999998888887766422 2 34556 88999999999999999999999999999999876
Q ss_pred ch
Q 010666 155 FL 156 (504)
Q Consensus 155 ~~ 156 (504)
+.
T Consensus 245 ~l 246 (266)
T 2of3_A 245 AA 246 (266)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 67
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.45 E-value=0.021 Score=64.81 Aligned_cols=254 Identities=13% Similarity=0.041 Sum_probs=159.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccc-ccc--HHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPY--YADILG 78 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~l-lpy--lp~iL~ 78 (504)
|..++++||..|-.+|..+=.+=.....+==...++.|+.-+.+.++..|..|..=|..+..-..... .+- ..+.+.
T Consensus 504 L~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 504 AKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIR 583 (810)
T ss_dssp HTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHH
Confidence 45678888888887877664221100011113468888888888888888888776766654332222 111 234566
Q ss_pred HHcccccCC-chHHHHHHHHHHHHHHHhhcCCCCC-CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch
Q 010666 79 AILPCISDK-EEKIRVVARETNEELRAIKADPADG-FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 156 (504)
Q Consensus 79 ~lLp~Lsd~-~~eIR~~A~~~N~~Ll~li~~~~~~-~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~ 156 (504)
.+...|.++ ....+..|..+...|...-.+.... ++ ...+..|...+.++++.+|.+|+.=|..+.. .|...-.+.
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v 661 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFE 661 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHH
Confidence 666666644 3333444555544433210000000 00 1245667777778889999998877766654 444433343
Q ss_pred --hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhh----HH--HHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh
Q 010666 157 --NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQH----FR--QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 157 --~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~----F~--~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a 227 (504)
.+.++.|++.+..++.+|...+...|+.|+. ++.. ++ ..+..|+.+..++..-...++...|.+++.. +.
T Consensus 662 ~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~ 740 (810)
T 3now_A 662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GE 740 (810)
T ss_dssp SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CH
Confidence 3689999999999999999999999999985 3322 22 3666788888888777788999999999872 33
Q ss_pred H--------HHHHHHHHhhccc--cChHHHHHHHHHHHHHh
Q 010666 228 E--------RVYRELSTILEGE--ADLDFACTMVQALNLIL 258 (504)
Q Consensus 228 E--------~Iy~~La~iL~~~--~Dl~F~~~mVq~Ln~iL 258 (504)
| -+...|.++|... .|.+++...++.|..++
T Consensus 741 e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 741 EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 2 2344555555443 47888888888887765
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.35 E-value=0.0013 Score=56.83 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC
Q 010666 31 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 110 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~ 110 (504)
..+.-++.|+..+.++++.+|..++..+.. +++. . +..++.+|.|+++.||..|..+...+ .
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~---~~~~-------~-~~~L~~~L~d~~~~vR~~A~~aL~~~----~--- 70 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSR---MGDE-------A-FEPLLESLSNEDWRIRGAAAWIIGNF----Q--- 70 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTS---CSST-------T-HHHHHHGGGCSCHHHHHHHHHHHGGG----C---
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHH---hCch-------H-HHHHHHHHcCCCHHHHHHHHHHHHhc----C---
Confidence 345567777888888888888777665543 2222 1 35666778888888998888776432 1
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 111 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 185 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~I 185 (504)
-...+..|...+.+++..+|.+|...|-.+- .....|.|.+.|.|++..|...+..-|.+|
T Consensus 71 ----~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 71 ----DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1456777777777888888888887776653 234677888888888888888887766543
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.28 E-value=0.1 Score=54.55 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=67.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc-cccccHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-QLVPYYADILGA 79 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~-~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~-~llpylp~iL~~ 79 (504)
|..++++++..|-..|..+...=.... .+--...|+.|+..+.+.++..|..|..=+..+..-.++ ...-.=.+.+..
T Consensus 11 L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~ 90 (457)
T 1xm9_A 11 LSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIRE 90 (457)
T ss_dssp HHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 456678888888878887652110000 122345799999999999999998888777776653121 111112356777
Q ss_pred Hccccc-CCchHHHHHHHHHHHHHHH
Q 010666 80 ILPCIS-DKEEKIRVVARETNEELRA 104 (504)
Q Consensus 80 lLp~Ls-d~~~eIR~~A~~~N~~Ll~ 104 (504)
+...|. ++++++++.|..+...+..
T Consensus 91 Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 91 AVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 777788 6788999888887766654
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.27 E-value=0.45 Score=48.90 Aligned_cols=181 Identities=15% Similarity=0.083 Sum_probs=125.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD---~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~ 78 (504)
+.|+..+.|... ..+.+.|--+-...++- ...+..-.+.-++++|...|..+---+.++...+++ ++ -...
T Consensus 34 fn~~~~~~~kc~-~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~i----Lv~N 107 (355)
T 3tjz_B 34 FNETPINPRKCA-HILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VI----IVTS 107 (355)
T ss_dssp TTSSSCCHHHHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GG----GGHH
T ss_pred hcCCCCcHHHHH-HHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HH----HHHH
Confidence 344544444433 35555555444332221 233444455677888877766666555667777444 43 4567
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhH
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 158 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~ 158 (504)
.+.+-+.|+++-||-.|-++...+ ..+ . =++.+...+.+.+.+.++.+|-+|+-=..+|+.++|+-+-.
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I----~~~--~-m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~---- 176 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQI----TDS--T-MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKR---- 176 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH----CCT--T-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHT----
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcC----CCH--H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHH----
Confidence 778889999999999998887654 221 1 15778888999999999999999988888999999997754
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhchh-hHHHHHHHH
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-HFRQLVVFL 199 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~-~F~~fm~~L 199 (504)
.+..+-..++|.++-|+-.++.++.+|+.++. .+.+++..+
T Consensus 177 ~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l 218 (355)
T 3tjz_B 177 WVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKF 218 (355)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 45567777899999999999999999996443 555554443
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.13 E-value=0.12 Score=50.81 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=136.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~-~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
|.|-|+.|+-.|=.+|.+.||+-... ...-+.++.+-++.-+.+.|+-+-.-|+.=|+.++.=-|..== -+-.+..++
T Consensus 42 L~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~-~y~Kl~~aL 120 (265)
T 3b2a_A 42 AGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK-TFLKAAKTL 120 (265)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Confidence 78999999999999999999985321 1234778888888888999999999999999998865432211 235667777
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
.-.+..+++-++..|..+.+.+ + ..-.+..+++.+..-+.|.+..++.++|.-+..+-.+..++ ++...+|
T Consensus 121 ~dlik~~~~il~~eaae~Lgkl-k------v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~--~i~~~I~ 191 (265)
T 3b2a_A 121 VSLLESPDDMMRIETIDVLSKL-Q------PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS--GHLTLIL 191 (265)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHC-C------BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC--CCGGGTT
T ss_pred HHHhcCCCchHHHHHHHHhCcC-C------cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH--HHHHHHH
Confidence 7777788888999999888876 2 22347889999988889999999999999999888877543 3445555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
..+=.-|+.+++.++.++|..+..|.+
T Consensus 192 ~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 192 DEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp TTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 555455667899999999999999984
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.79 E-value=0.21 Score=49.09 Aligned_cols=179 Identities=17% Similarity=0.121 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccc-ccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 110 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~ll-pylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~ 110 (504)
..+.+.+|...++..|+.++..++.=|.+++.-.+..+- .-+-++|+.++..+.++++.|---|.+|...++.-++ -
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp--L 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP--M 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC--B
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC--C
Confidence 466899999999999999999999999999998654443 3467788888888899998888888888887776553 2
Q ss_pred CCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---h
Q 010666 111 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---K 187 (504)
Q Consensus 111 ~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is---~ 187 (504)
..-+|..++++++.-..+.++.-+..|.+=+--+ ++.....++...+..-++..+.+|-..++.++-+|+ +
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3445899999999999999998888877666555 444555666666666667788999999999999998 3
Q ss_pred chhhHHHHHHHHHhhccccchhhhhhHHHHH
Q 010666 188 DLQHFRQLVVFLVHNFRVDNSLLEKRGALII 218 (504)
Q Consensus 188 ~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lII 218 (504)
+...++.+...+-.+.+++...+-.||=.++
T Consensus 183 D~~i~~~I~~eI~elL~~eD~~l~e~aLd~L 213 (265)
T 3b2a_A 183 DSGHLTLILDEIPSLLQNDNEFIVELALDVL 213 (265)
T ss_dssp SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5677888888888888888777777764433
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.72 E-value=0.12 Score=53.92 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=117.2
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc-cccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC
Q 010666 36 AEILVQRAASPDEFTRLTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD 114 (504)
Q Consensus 36 I~ILv~~l~s~e~~iRltaL~WI~efl~i~~~-~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d 114 (504)
++.|+..+.+.++..|..|...|..+..-.+. ...-.-.+.+..+..+|.+++++++..|..+...+..--.+....+-
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56677778888999999999999997643322 21222457788888899999999999998887776541000000000
Q ss_pred hHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcC--------C--------CCHHHHHH
Q 010666 115 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS--------D--------PSDEVVLL 177 (504)
Q Consensus 115 ~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLS--------D--------~sdeVv~~ 177 (504)
=...+..|...+. +.++.++..|. |.+.-+...+.--....++.+|.|++.|. + .+.+|...
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~-~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLT-GLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHH-HHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHH-HHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 0123567777787 77788877765 44333333322111122389999999993 2 24678889
Q ss_pred HHHHHHHHhhchhhHHH------HHHHHHhhccc-------cchhhhhhHHHHHHHHhhcC
Q 010666 178 VLEVHACIAKDLQHFRQ------LVVFLVHNFRV-------DNSLLEKRGALIIRRLCVLL 225 (504)
Q Consensus 178 ~L~LLa~Is~~~~~F~~------fm~~LL~lF~~-------dr~LLe~Rg~lIIRqLC~~L 225 (504)
+...|..+|.++++.+. .+..|+.++.+ |.+..+ .+--++|+||..+
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e-~a~~~L~nLs~~~ 222 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE-NCMCVLHNLSYRL 222 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHH-HHHHHHHHHTTTH
T ss_pred HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHH-HHHHHHHhcccch
Confidence 99999999976544433 34446666653 333333 2345688888543
No 74
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.38 E-value=0.051 Score=59.51 Aligned_cols=208 Identities=8% Similarity=0.041 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc-cccccHHHHHHHHcccccCCchHH
Q 010666 13 ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKI 91 (504)
Q Consensus 13 ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~-~llpylp~iL~~lLp~Lsd~~~eI 91 (504)
+-.-|+++++.-+....+. ..-|+.|+..+.+.++..|..|..+|..+..-.+. ...-.-.+.+..+...|.++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~v 106 (584)
T 3l6x_A 28 SLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106 (584)
T ss_dssp ------------CCCCCCC-CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred hHHHHHHHHhcCCCCCCcc-cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHH
Confidence 3346778877644333332 33477788888999999999999888776642211 111112356777888889999999
Q ss_pred HHHHHHHHHHHHHhh-cCCCCCCChHhHHHHHHHhcCC-CCHHHHHHH--HHHHHHHHhhchhhhhhchhHHHHHHHHhc
Q 010666 92 RVVARETNEELRAIK-ADPADGFDVGPILSIATRQLSS-EWEATRIEA--LHWISTLLNRHRTEVLHFLNDIFDTLLKAL 167 (504)
Q Consensus 92 R~~A~~~N~~Ll~li-~~~~~~~d~~~iv~vL~~~L~s-~~e~TRlaa--L~WL~~L~~k~P~~~l~~~~~lfp~LLksL 167 (504)
++.|..+...|..-- .+....+--...|..|+..|.+ .++.++..| .=|-.-.....+..|. .+-+|.|++.|
T Consensus 107 q~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~---~~alp~Lv~LL 183 (584)
T 3l6x_A 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV---DHALHALTDEV 183 (584)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH---HHTHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH---hccHHHHHHHH
Confidence 999988876653210 0000000001345667777764 455544433 2344433443334444 34477777755
Q ss_pred ------------------CCCCHHHHHHHHHHHHHHhhchhhHHHHHH-------HHHhhccc-------cchhhhhhHH
Q 010666 168 ------------------SDPSDEVVLLVLEVHACIAKDLQHFRQLVV-------FLVHNFRV-------DNSLLEKRGA 215 (504)
Q Consensus 168 ------------------SD~sdeVv~~~L~LLa~Is~~~~~F~~fm~-------~LL~lF~~-------dr~LLe~Rg~ 215 (504)
..++++|...+...|..++.+.++.++.|. .|+.+++. +.+.. .-..
T Consensus 184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~-enav 262 (584)
T 3l6x_A 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV-ENCV 262 (584)
T ss_dssp HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHH-HHHH
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHH-HHHH
Confidence 123579999999999999976655555443 45666542 22322 2245
Q ss_pred HHHHHHhhcC
Q 010666 216 LIIRRLCVLL 225 (504)
Q Consensus 216 lIIRqLC~~L 225 (504)
-++|+||..+
T Consensus 263 ~aL~NLs~~~ 272 (584)
T 3l6x_A 263 CLLRNLSYQV 272 (584)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHhhccc
Confidence 5889999775
No 75
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.32 E-value=0.92 Score=52.39 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=130.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH--HcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ--RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~--~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
.|+++-||..+=.+++++=+-+...+ -.++.+++.++. .+..+++.+|..|-.=+..|++-++..+.||++.|+..+
T Consensus 505 ~~~hp~V~~~~~~~l~rys~~~~~~~-~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 505 RHPHPLVQLLYMEILVRYASFFDYES-AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAML 583 (980)
T ss_dssp TCCCHHHHHHHHHHHHHTGGGGGTCC-TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 58899999988889999988887654 457888888888 777778889999999999999999999999999999999
Q ss_pred cccccCCc-----hH-----HHHH-----------HHHHHHHHHHhhcCCCCC--CChHhHHHH----HHHhcC---CC-
Q 010666 81 LPCISDKE-----EK-----IRVV-----------ARETNEELRAIKADPADG--FDVGPILSI----ATRQLS---SE- 129 (504)
Q Consensus 81 Lp~Lsd~~-----~e-----IR~~-----------A~~~N~~Ll~li~~~~~~--~d~~~iv~v----L~~~L~---s~- 129 (504)
-++|.-.. ++ ++++ --++-+.++.....+.+. .-++.++.. +...+. ++
T Consensus 584 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~ 663 (980)
T 3ibv_A 584 GDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL 663 (980)
T ss_dssp TGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 99988311 11 1111 112222233222211110 112233333 222232 11
Q ss_pred CHHHHH-HHHHHHHHHHhhchhh------hhhchhHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhh-----chhhHHHH
Q 010666 130 WEATRI-EALHWISTLLNRHRTE------VLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACIAK-----DLQHFRQL 195 (504)
Q Consensus 130 ~e~TRl-aaL~WL~~L~~k~P~~------~l~~~~~lfp~LLksLS--D~sdeVv~~~L~LLa~Is~-----~~~~F~~f 195 (504)
.+..++ ..+.|+-.+-+..+.. +...+....++++.+|+ ..+..|++.+-..++++-. -..+..++
T Consensus 664 ~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~ 743 (980)
T 3ibv_A 664 ENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQL 743 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHH
Confidence 222233 5678888888776432 56677788888888887 5678899999888888651 12444555
Q ss_pred HHHHHhhcc
Q 010666 196 VVFLVHNFR 204 (504)
Q Consensus 196 m~~LL~lF~ 204 (504)
+..++..|+
T Consensus 744 i~~ll~~~~ 752 (980)
T 3ibv_A 744 ISILLNSID 752 (980)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhcCC
Confidence 555554444
No 76
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.21 E-value=0.26 Score=51.06 Aligned_cols=174 Identities=10% Similarity=0.125 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--c-hhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHH
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK--D-LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELS 235 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~-~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La 235 (504)
.+..|..+|..+...|+..++++|+.+|. + +.-++.++..+-. |+. .. =..| |..+-
T Consensus 163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~-~~~-~~-e~~R-----------------F~~lv 222 (383)
T 3eg5_B 163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE-RAE-MD-EVER-----------------FQPLL 222 (383)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH-HHH-HH-TSCT-----------------THHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH-HHH-hC-CCCc-----------------HHHHH
Confidence 35567777888888999999999999983 2 2248888887744 332 11 0122 44444
Q ss_pred HhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHH-----
Q 010666 236 TILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHH----- 310 (504)
Q Consensus 236 ~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~----- 310 (504)
+.|..+.+.+|.....+..|.++-+.+++ ++|..||+-+..-.=..++..| +. +.++-=.. =-+.|+.
T Consensus 223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ef~~~Gl~~il~~l-r~-~~~~~L~~----Qi~~fe~~~~eD 295 (383)
T 3eg5_B 223 DGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRSELMRLGLHQVLQEL-RE-IENEDMKV----QLCVFDEQGDED 295 (383)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHTTHHHHHHHH-TT-SCCHHHHH----HHHHHHHHHHHH
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCChHHHHHHH-hc-CCChhHHH----HHHHHHHHHHHh
Confidence 55655689999999999999988877654 4566666422111222223221 11 11221111 1122222
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhc
Q 010666 311 ASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 370 (504)
Q Consensus 311 A~~li~~~~~~eitv~~L~qiD~LVqLlESPiF~~LRLqLLep~~~p~L~k~LyglLMlL 370 (504)
-.++...|.++.+..+.. + .+|..|.-++=.-..+||+.-.|..||++-
T Consensus 296 ~~el~~r~~~~~~d~~d~------~-----~~~~~l~~~~~~t~a~~~flSiLQhLlli~ 344 (383)
T 3eg5_B 296 FFDLKGRLDDIRMEMDDF------G-----EVFQIILNTVKDSKAEPHFLSILQHLLLVR 344 (383)
T ss_dssp HHHHHHHHHHHHHHCCSH------H-----HHHHHHHHHTTTSTTHHHHHHHHHHTTCSC
T ss_pred HHHHHhhccccCcCcCCH------H-----HHHHHHHHHhcCCcchHHHHHHHHHHHhcc
Confidence 123344443222111111 1 135556666666777899999999988864
No 77
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.00 E-value=0.17 Score=58.54 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCC
Q 010666 34 RMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF 113 (504)
Q Consensus 34 ~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~ 113 (504)
....+|.....+.++.++..++.=+..++.--+...+.- +.+++.++.+|++ +++|++|.+|...+...-.++.
T Consensus 193 ~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~--- 266 (980)
T 3ibv_A 193 FVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPL--- 266 (980)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHH---
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChh---
Confidence 344444444444667777777776666666434333322 7899999999987 7899999999887766532211
Q ss_pred ChHhHHHHH--HHhc---C--CCCHHH--HHH------HHHHHHHHHhhchh--------hhhhchhHHHHHHHHhcCCC
Q 010666 114 DVGPILSIA--TRQL---S--SEWEAT--RIE------ALHWISTLLNRHRT--------EVLHFLNDIFDTLLKALSDP 170 (504)
Q Consensus 114 d~~~iv~vL--~~~L---~--s~~e~T--Rla------aL~WL~~L~~k~P~--------~~l~~~~~lfp~LLksLSD~ 170 (504)
+...++..+ ...+ . +++++. +++ +-.|+.. .+.|. +..+++..+++.+|.+++++
T Consensus 267 ~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~ 344 (980)
T 3ibv_A 267 EKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI--KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD 344 (980)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH--HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS
T ss_pred hHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH--ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC
Confidence 111222221 1212 1 233332 222 3377777 56652 45578889999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 010666 171 SDEVVLLVLEVHACIA 186 (504)
Q Consensus 171 sdeVv~~~L~LLa~Is 186 (504)
+++|...+++.|....
T Consensus 345 ~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 345 YDETSTAVFPFLSDLL 360 (980)
T ss_dssp SHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999998876
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.97 E-value=0.37 Score=49.11 Aligned_cols=195 Identities=14% Similarity=0.061 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHcccc-cCCchHHHHHHHHHHHHHHHhhcC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCI-SDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~iL~~lLp~L-sd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
.+..|+.|+.-+++.++.+|..+..=|..+-.-...+.-.. -.+.+..+...| ..+++++++.|..+...|-..-.+
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 46679999999999999999877665655543222111111 124555566653 456778888777766555431111
Q ss_pred CCCCCC-hHhHHHHHHHhcCCCCH----HHHHHHH---HHHHHHHhhchhhhhhc-hhHHHHHHHHhcCCCCHHHHHHHH
Q 010666 109 PADGFD-VGPILSIATRQLSSEWE----ATRIEAL---HWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVL 179 (504)
Q Consensus 109 ~~~~~d-~~~iv~vL~~~L~s~~e----~TRlaaL---~WL~~L~~k~P~~~l~~-~~~lfp~LLksLSD~sdeVv~~~L 179 (504)
....+- ....+..|...+.+.++ ..+..|. .-|.......++..-.. ..+.+|.|+..|.+.+++|...+.
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 000111 23567778888865543 2443333 22222111244332222 246899999999999999999999
Q ss_pred HHHHHHhh-chhhHH-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcCC
Q 010666 180 EVHACIAK-DLQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 180 ~LLa~Is~-~~~~F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~ 226 (504)
..|..++. +++.=. ..+..|.++......-....+...+++|+..-+
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999994 333322 224556777766544445555668888888744
No 79
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.91 E-value=0.1 Score=50.49 Aligned_cols=188 Identities=13% Similarity=0.029 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCCCh--HHHHHHHHHHHHHHhcCC-ccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCC
Q 010666 35 MAEILVQRAASPDE--FTRLTAITWINEFVKLGG-DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 111 (504)
Q Consensus 35 iI~ILv~~l~s~e~--~iRltaL~WI~efl~i~~-~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~ 111 (504)
-++.|++.+.+.++ ..|..+..+|..+..-.+ ..-.-.-.+.+..+...|.++++++++.|..+...|-.--.+...
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46778888898887 788889988877664322 111112235667888888899999999999887766431000000
Q ss_pred CCChHhHHHHHHHhcC-CCCHHHHHHHH--HHHHHHHhhchhhhhhchhHHHHHHHHhcC-------C---------CCH
Q 010666 112 GFDVGPILSIATRQLS-SEWEATRIEAL--HWISTLLNRHRTEVLHFLNDIFDTLLKALS-------D---------PSD 172 (504)
Q Consensus 112 ~~d~~~iv~vL~~~L~-s~~e~TRlaaL--~WL~~L~~k~P~~~l~~~~~lfp~LLksLS-------D---------~sd 172 (504)
.+--...+..|...|. +.+..+|..|. =|=...++.....+.. .-+|.|...+. | .+.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~---~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT---EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH---HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh---ccHHHHHHHHhccccCCcccccccccccchH
Confidence 0000124556666665 45666665544 5655555555445543 34677765442 1 256
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHH-------HHHHhhccc-------cchhhhhhHHHHHHHHhhcCC
Q 010666 173 EVVLLVLEVHACIAKDLQHFRQLV-------VFLVHNFRV-------DNSLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 173 eVv~~~L~LLa~Is~~~~~F~~fm-------~~LL~lF~~-------dr~LLe~Rg~lIIRqLC~~L~ 226 (504)
+|...+...|..+|+.+...++-| +.|+.+.+. |.+..|. ..-++|+||..|.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En-~v~~L~nLs~~~~ 232 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATEN-CVCILHNLSYQLE 232 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHH-HHHHHHHHHhhhc
Confidence 999999999999997554445444 444555443 3333332 3459999998764
No 80
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.76 E-value=0.43 Score=49.39 Aligned_cols=174 Identities=9% Similarity=0.133 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chh-hHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHH
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELS 235 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~-~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La 235 (504)
.+..+..+|..+...+...++++|+-+|. +++ .++.++..+-.+ .. .+.+. -|..+-
T Consensus 101 ~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~-~~----~~e~~---------------RF~~lv 160 (386)
T 2bnx_A 101 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER-AE----MDEVE---------------RFQPLL 160 (386)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH-HH----HHTSC---------------TTHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH-HH----hCchh---------------hHHHHH
Confidence 35677788888889999999999999993 222 377777777543 21 01111 133333
Q ss_pred HhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHH----
Q 010666 236 TILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHA---- 311 (504)
Q Consensus 236 ~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A---- 311 (504)
+.+....+.+|.....+..|.++-+.++ .++|..||+-+..-.=..++..| +.+ .|| . |=-=-+.|+..
T Consensus 161 ~~l~~~~~~e~~~a~m~lIN~lv~~~~d-l~~R~~LR~Ef~~~GL~~il~~L-r~~-~~~--~--L~~Qi~~fe~~~~eD 233 (386)
T 2bnx_A 161 DGLKSGTSIALKVGCLQLINALITPAEE-LDFRVHIRSELMRLGLHQVLQEL-REI-ENE--D--MKVQLCVFDEQGDED 233 (386)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHTTHHHHHHHH-TTC-CCH--H--HHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCChHHHHHHH-hcc-CCh--h--HHHHHHHHHHHHHHH
Confidence 4445568899999999999999888776 45677776532111112223222 221 222 1 11112223322
Q ss_pred -HHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhc
Q 010666 312 -SAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 370 (504)
Q Consensus 312 -~~li~~~~~~eitv~~L~qiD~LVqLlESPiF~~LRLqLLep~~~p~L~k~LyglLMlL 370 (504)
-.+.+.|.++++.++... -+|..+.-++=+-+.+||+.-.|..||++-
T Consensus 234 ~~el~~r~~~i~~d~~d~~-----------~~~~~l~~~~~~t~~~~~flSiLQhLLli~ 282 (386)
T 2bnx_A 234 FFDLKGRLDDIRMEMDDFG-----------EVFQIILNTVKDSKAEPHFLSILQHLLLVR 282 (386)
T ss_dssp HHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHTTSTHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhhhcCCCCCCCHH-----------HHHHHHHHHHcCCCchhHHHHHHHHHHhCC
Confidence 123333333322222211 134555555556667899999999998864
No 81
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.67 E-value=3 Score=40.93 Aligned_cols=112 Identities=9% Similarity=0.122 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhh----
Q 010666 31 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK---- 106 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li---- 106 (504)
-|+++++-++.....++.++|.+.+..|.|...-. ..+.+.+++.+.-.+.|+++.|-+-|..+-..++..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999888888888987777776665332 3588899999999999999998888888887766544
Q ss_pred cCCCCCC-C-------hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 010666 107 ADPADGF-D-------VGPILSIATRQLSSEWEATRIEALHWISTLLN 146 (504)
Q Consensus 107 ~~~~~~~-d-------~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~ 146 (504)
...++.- + +..+-+.+...+.+.++-+|+.|++.+..+..
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 2222211 1 22334455666788999999999999988773
No 82
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.66 E-value=3.7 Score=47.11 Aligned_cols=189 Identities=13% Similarity=0.076 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-c-----CCccccccHHHHHHHHcccccCCch----------------
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVK-L-----GGDQLVPYYADILGAILPCISDKEE---------------- 89 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~-i-----~~~~llpylp~iL~~lLp~Lsd~~~---------------- 89 (504)
+..+++.++.-.+..|+++...++.+...+.+ + ....+-++++.++..+++.+..++.
T Consensus 342 l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 55678888887777888999999986666665 2 2234558999999999998854310
Q ss_pred ------HHHHHHHHHHHHHHHhhcCCCCCCC-hHhHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhchhhhh-hchhHH
Q 010666 90 ------KIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTEVL-HFLNDI 159 (504)
Q Consensus 90 ------eIR~~A~~~N~~Ll~li~~~~~~~d-~~~iv~vL~~~L~s--~~e~TRlaaL~WL~~L~~k~P~~~l-~~~~~l 159 (504)
+.|+.+..+...+...... + +..+.+.+..++.+ .+-..|-||+-=+-.+.......+- .+.+.+
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~~~-----~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v 496 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTV 496 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHH
Confidence 2355566655555433211 1 12333455555543 2333444544333333232222222 235555
Q ss_pred HHHHHHhcCC------CCHHHHHHHHHHHHHHh----hchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCC
Q 010666 160 FDTLLKALSD------PSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 226 (504)
Q Consensus 160 fp~LLksLSD------~sdeVv~~~L~LLa~Is----~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~ 226 (504)
++.++. +.+ +.+.|...++.++.+++ .+.+++..++..+++.+....+-...++..-++++|...+
T Consensus 497 ~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 497 IKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 555544 222 22333335778888776 4667889999999888876555557777778888887644
No 83
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.50 E-value=1.5 Score=48.57 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=132.9
Q ss_pred CCchHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhcCCcccccc-HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhh
Q 010666 29 SVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEELRAIK 106 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e-~~iRltaL~WI~efl~i~~~~llpy-lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li 106 (504)
.-.-.+-|+.|.+|+.+.- .+=|..|+.=++.|-.-++..+-.. +|.+++.+=.-- .+.|+-+.+.+ .|+.++
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~--~D~e~v~~~Le---tL~~l~ 90 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR--SDSEIIGYALD---TLYNII 90 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT--TCHHHHHHHHH---HHHHHH
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc--ccHHHHHHHHH---HHHHHh
Confidence 3457889999999997653 6779999999999987777766554 555554443332 23344444444 443333
Q ss_pred cCCCC----------CCCh-----------HhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc---hhHHHHH
Q 010666 107 ADPAD----------GFDV-----------GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF---LNDIFDT 162 (504)
Q Consensus 107 ~~~~~----------~~d~-----------~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~---~~~lfp~ 162 (504)
...++ .-++ .+-+..|...|.+++..+|+.+++-|..|....|.+.-.. .+.-.|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~ 170 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSR 170 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHH
Confidence 22110 0111 2346778888899999999999999999999999876543 2367899
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHH------HHHhhccccchhhhhhHHHH-------HHHHhhcCC--h
Q 010666 163 LLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV------FLVHNFRVDNSLLEKRGALI-------IRRLCVLLD--A 227 (504)
Q Consensus 163 LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~------~LL~lF~~dr~LLe~Rg~lI-------IRqLC~~L~--a 227 (504)
|+..|+|+.+-|...++-+|..++.+.....+++. .|.+.+..+.. .+|..+ +-+|... | .
T Consensus 171 Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~---~~Ggivv~DCL~ll~nLLr~-N~sN 246 (651)
T 3grl_A 171 LMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN---SDGGIVVEDCLILLQNLLKN-NNSN 246 (651)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG---GGSHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC---CccchhHHHHHHHHHHHHhc-CHHH
Confidence 99999999999999999999999976666555544 46777776654 246655 5555444 5 3
Q ss_pred HHHHHH
Q 010666 228 ERVYRE 233 (504)
Q Consensus 228 E~Iy~~ 233 (504)
.+.|++
T Consensus 247 Q~~FrE 252 (651)
T 3grl_A 247 QNFFKE 252 (651)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 567775
No 84
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.47 E-value=5.1 Score=41.60 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=139.8
Q ss_pred chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc---
Q 010666 31 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA--- 107 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~--- 107 (504)
=++++++-+++....++.++|..++..|.|...- -..+++.+++.+.-.|.|+++.|-+.+..+-..++.++-
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988899998777777776653 344578888888888889998888888888777665442
Q ss_pred -CCCCCC----C----hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch-----------------------------
Q 010666 108 -DPADGF----D----VGPILSIATRQLSSEWEATRIEALHWISTLLNRHR----------------------------- 149 (504)
Q Consensus 108 -~~~~~~----d----~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P----------------------------- 149 (504)
..++.- + +..+-+.+...+.+.++-+|++|++.+..+....-
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~ 215 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQ 215 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSC
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCC
Confidence 222211 1 23444455666788999999999999888773221
Q ss_pred -hhhhhchhHHHHHHHHhcCCC--CHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcC
Q 010666 150 -TEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 225 (504)
Q Consensus 150 -~~~l~~~~~lfp~LLksLSD~--sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L 225 (504)
.++..-..++|..||+.|.++ ++-.+.-.+.-|+.|. .-..+...++..|+.+-.+-..-+ .++. ++-+
T Consensus 216 ~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t~-sk~q--vkSv---- 288 (386)
T 3o2t_A 216 YNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTL-AKSQ--VSSV---- 288 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC-----CGGG--HHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCccH-HHHH--HHHH----
Confidence 112222347899999999864 3445555666677777 356677777777765433222111 1111 1111
Q ss_pred ChHHHHH-HHHHhhccccChHHHHHHHHHHHHHhcCchhHHH
Q 010666 226 DAERVYR-ELSTILEGEADLDFACTMVQALNLILLTSSELSE 266 (504)
Q Consensus 226 ~aE~Iy~-~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~ 266 (504)
|+-.| .|..+|..-.-.+|...+.+.|...--+-.|.++
T Consensus 289 --~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~Ei~~ 328 (386)
T 3o2t_A 289 --RKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIAR 328 (386)
T ss_dssp --HHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHHHHHH
Confidence 11111 2333444444568999999999886656566654
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.41 E-value=0.54 Score=49.80 Aligned_cols=193 Identities=14% Similarity=0.041 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHcccc-cCCchHHHHHHHHHHHHHHHhhcC
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCI-SDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~iL~~lLp~L-sd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
.+..|+.|+..+++.++.+|..+..=|..+-.-.+...-.. -.+.+..+...| ..+++++++.|..+...|-..-.+
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 46679999999999999998877654544322111111111 135566666653 446778888777776555432111
Q ss_pred CCCCCC-hHhHHHHHHHhcCCCCH----HHHHHHHHHHHHHHh----hchhhhhhc-hhHHHHHHHHhcCCCCHHHHHHH
Q 010666 109 PADGFD-VGPILSIATRQLSSEWE----ATRIEALHWISTLLN----RHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLV 178 (504)
Q Consensus 109 ~~~~~d-~~~iv~vL~~~L~s~~e----~TRlaaL~WL~~L~~----k~P~~~l~~-~~~lfp~LLksLSD~sdeVv~~~ 178 (504)
....+- ....+..|...+.+.++ ..+..|. |.+.-+. ..++..-.. ..+.+|.|+..|.+.+++|...+
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~-~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A 399 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG-GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 399 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHH-HHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHH
Confidence 001111 23467777777765433 2444333 3332222 344433222 24789999999999999999999
Q ss_pred HHHHHHHhh-chhhHH-----HHHHHHHhhccccchhhhhhHHHHHHHHhhcC
Q 010666 179 LEVHACIAK-DLQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 225 (504)
Q Consensus 179 L~LLa~Is~-~~~~F~-----~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L 225 (504)
...|+.++. +++.=. ..+..|.++......-...-+...+++|+..-
T Consensus 400 ~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 400 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999994 333222 22455677776554444555667888888764
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.37 E-value=1.7 Score=41.52 Aligned_cols=139 Identities=20% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCC
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 112 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~ 112 (504)
..++|+|..+..-.++.+|...=.=+.|+..-.|. .+|.+..-++.++++++.+=|-+|.++ ...+.+ ++
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnF----i~alGe--n~ 175 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNF----IEAMGE--NS 175 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHH----HHTCCT--TT
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHhc--cC
Confidence 55777777777777777777666666666666655 456777777777777775544444333 333322 11
Q ss_pred CC-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 113 FD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 113 ~d-~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+. +.+-+.-|...|.+.++-+|..|.+=|.++-.+.|. + -.+.-.-+.-+.|.|+.|..++-+-|++|.
T Consensus 176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-l----Rkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-L----RKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-H----HHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-H----HHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22 234555666667777777777777777777777765 2 234445566777777777777766666664
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=94.24 E-value=1.3 Score=50.16 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=149.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChH---HHHHHHHHHHHHHhcC-Cccccc-cH-HH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF---TRLTAITWINEFVKLG-GDQLVP-YY-AD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~---iRltaL~WI~efl~i~-~~~llp-yl-p~ 75 (504)
++.+++++|..|-.+|..+=.+-.....+-=..-++.|+..+.+..+. .|..|..=|..+.--. |..+.+ |- .+
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 445678888888888877744311111111134577788888776544 6877777666666322 222221 11 15
Q ss_pred HHHHHcccccC-Cch------------HH-HHHHHHHHHHHHHhhcCCCCC-----CChHhHHHHHHHhcCCCCHHHHHH
Q 010666 76 ILGAILPCISD-KEE------------KI-RVVARETNEELRAIKADPADG-----FDVGPILSIATRQLSSEWEATRIE 136 (504)
Q Consensus 76 iL~~lLp~Lsd-~~~------------eI-R~~A~~~N~~Ll~li~~~~~~-----~d~~~iv~vL~~~L~s~~e~TRla 136 (504)
.+..++..|.. +.. .+ +-.|..+...|...-.+.++. +.-...+..|...+.++++..|.+
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 56666666652 211 11 333444433333221000000 111236778899999999999999
Q ss_pred HHHHHHHHHhhchhhhh-hchh----H---HHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhh----H--HHHHHHHHh
Q 010666 137 ALHWISTLLNRHRTEVL-HFLN----D---IFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQH----F--RQLVVFLVH 201 (504)
Q Consensus 137 aL~WL~~L~~k~P~~~l-~~~~----~---lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~----F--~~fm~~LL~ 201 (504)
|..=+..|.. .|..+. .+++ . -++.|++-+..+++++...+...++.++ .++.. + ..++..++.
T Consensus 626 A~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 626 TLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp HHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHH
Confidence 9877777775 776442 3321 1 3788888888888999999999999985 33321 1 367788888
Q ss_pred hccc--cchhhhhhHHHHHHHHhhcCC-------------hHHHHHHHHHhhccc-cChHHHHHHHHHH
Q 010666 202 NFRV--DNSLLEKRGALIIRRLCVLLD-------------AERVYRELSTILEGE-ADLDFACTMVQAL 254 (504)
Q Consensus 202 lF~~--dr~LLe~Rg~lIIRqLC~~L~-------------aE~Iy~~La~iL~~~-~Dl~F~~~mVq~L 254 (504)
+|.. +..-+..||..++++|-.... ..+...++..+|... .|-+|++.|=.+|
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~~~~ 773 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVIL 773 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 8888 778888999999999986332 135566666666553 3455555444433
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.92 E-value=0.56 Score=51.41 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=100.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|-||.=|||.||...|.+.++.-....... ..... |=.+|+.+|==+..|- .|
T Consensus 183 LFdp~WEiRHGAALGLREILR~hG~GAGR~---------~~~N~-DLAvRLLCVLALDRFG--------DY--------- 235 (800)
T 3oc3_A 183 LLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ---------IRVDS-KLFSKIYEILVTDKFN--------DF--------- 235 (800)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCC----CC---------CCCCT-THHHHHHHHHHHBCCB--------BC---------
T ss_pred hcCcchhhhhHHHHHHHHHHHHhccCCcee---------ccccH-HHHHHHHHHHHhcccc--------cc---------
Confidence 568888999999999999998864321110 11111 3345554443222222 22
Q ss_pred ccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHH
Q 010666 82 PCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 160 (504)
Q Consensus 82 p~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lf 160 (504)
.||.. .=||+.|.++.+.+ .-+.+. -.++..|...+....=++|-.+|-=|.-+ .+++.-+++++
T Consensus 236 --VSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv 301 (800)
T 3oc3_A 236 --VDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLC 301 (800)
T ss_dssp --SSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHH
T ss_pred --ccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHH
Confidence 23322 23899999999987 444332 24566555555666667887766333333 44444489999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcc
Q 010666 161 DTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 204 (504)
Q Consensus 161 p~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~ 204 (504)
++++..|+|++|+|..-|.+.|.-|+ ..+.+..++..+-+.+.
T Consensus 302 ~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~~LL~iLWd~L~ 344 (800)
T 3oc3_A 302 RKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLDLVLEKCWKNIE 344 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcccHHHHHHHHHhhhhc-chhhHHHHHHHHHHHhh
Confidence 99999999999999999998888887 44555555555544443
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.70 E-value=12 Score=42.78 Aligned_cols=114 Identities=9% Similarity=0.066 Sum_probs=83.9
Q ss_pred ccHHHHHHHHccccc-----CCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010666 71 PYYADILGAILPCIS-----DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 145 (504)
Q Consensus 71 pylp~iL~~lLp~Ls-----d~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~ 145 (504)
+|+|.++..++.... |+.+-++..++.+-+.+-+.+...+ --+..+++.+...+.+++..+|.+|-.=+..|.
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~ 568 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 457777777765332 3456666567778777666654422 236788898888888888889988888888888
Q ss_pred hhchhhhh--------hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 146 NRHRTEVL--------HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 146 ~k~P~~~l--------~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+.++..+. +|.+.++..+...+.+.+++-....++-+..|.
T Consensus 569 ~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 569 QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88888876 999999999988888877665666666666665
No 90
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.43 E-value=0.21 Score=42.71 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=79.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHc
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 81 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lL 81 (504)
|.|++++||..|-..|.++ .. +. ++.|+..+..+++.+|..++..+..+ +. +..+..+.
T Consensus 21 L~~~~~~vR~~A~~~L~~~----~~------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~---~~-------~~a~~~L~ 79 (131)
T 1te4_A 21 MADENKWVRRDVSTALSRM----GD------EA-FEPLLESLSNEDWRIRGAAAWIIGNF---QD-------ERAVEPLI 79 (131)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS------TT-HHHHHHGGGCSCHHHHHHHHHHHGGG---CS-------HHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHh----Cc------hH-HHHHHHHHcCCCHHHHHHHHHHHHhc---CC-------HHHHHHHH
Confidence 5666667766665444321 11 12 58888999999999999998876553 22 56677888
Q ss_pred ccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHH
Q 010666 82 PCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWI 141 (504)
Q Consensus 82 p~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL 141 (504)
.+|.|+++.||..|..+...+- -...+..|...+.+++..+|.+|..-|
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8889999999999998877541 256788899999888999999987655
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.63 E-value=0.48 Score=48.29 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=114.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH--hccCCCCchHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhcCCcccccc--HHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGGDQLVPY--YADI 76 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLke--Ik~~~~vD~~~iI~ILv~~l-~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~i 76 (504)
|..++++|+..|-.+|..+-.. -.....+--...|+.|+..+ .+.++.++..++.=+..+-...+..=... -.+.
T Consensus 136 L~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Ga 215 (354)
T 3nmw_A 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 215 (354)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTH
T ss_pred HCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCc
Confidence 5567788888887777666321 00000111123567777763 55677777766655555544332211111 2456
Q ss_pred HHHHcccccCCch----HHHHHHHHHHHHHHHhhcCCCCC----CChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 010666 77 LGAILPCISDKEE----KIRVVARETNEELRAIKADPADG----FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 148 (504)
Q Consensus 77 L~~lLp~Lsd~~~----eIR~~A~~~N~~Ll~li~~~~~~----~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~ 148 (504)
+..+...|.++.+ +|++.|..+...+-..+....+. .+ ...+..|...+.+.+..++..|..=|..|-...
T Consensus 216 i~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 294 (354)
T 3nmw_A 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294 (354)
T ss_dssp HHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC
Confidence 6666666666543 58888888777666543221111 11 235778888898888888888876565665344
Q ss_pred hhhhhhc-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 149 RTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 149 P~~~l~~-~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
++..-.. -.+.+|.|..-|.+.++++...+...|..++.
T Consensus 295 ~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 295 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 5443322 34789999999999999999999999999984
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.26 E-value=0.44 Score=52.24 Aligned_cols=171 Identities=14% Similarity=0.177 Sum_probs=111.5
Q ss_pred CCCc-HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHH---HHHHHHHHHHhcCCccccccHHHHHH
Q 010666 3 SDSS-HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRL---TAITWINEFVKLGGDQLVPYYADILG 78 (504)
Q Consensus 3 sDpn-~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRl---taL~WI~efl~i~~~~llpylp~iL~ 78 (504)
||.. .-||..|.++|+-. +-.. +. -.++..|+..+...+=++|. ..++++ .+++.-++.++.
T Consensus 237 SDqVVAPVRETaAQtLGaL-~hLp--~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL--------~DLL~~Ld~Vv~ 302 (800)
T 3oc3_A 237 DDRTVAPVRDAAAYLLSRI-YPLI--GP---NDIIEQLVGFLDSGDWQVQFSGLIALGYL--------KEFVEDKDGLCR 302 (800)
T ss_dssp SSSCBCHHHHHHHHHHHHH-TTTS--CS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHT--------GGGCCCHHHHHH
T ss_pred cCeeeeehHHHHHHHHHHH-HhCC--hh---HHHHHHHHhhcCCCCeeehhhhHHHHHHH--------HHHHHHHHHHHH
Confidence 4433 25999999999996 3332 22 24566666666666667776 555565 333333899999
Q ss_pred HHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhchhhhhhch
Q 010666 79 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHFL 156 (504)
Q Consensus 79 ~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~--e~TRlaaL~WL~~L~~k~P~~~l~~~ 156 (504)
+++..|+|++.+||.+|..+..-.. ..-.++.+++++-..|.+.+ ...--.+++-|..|+..-+. ....
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA-------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~d 373 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP-------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIP 373 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC-------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCC
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc-------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccC
Confidence 9999999999999999988764332 22336777887777665332 22344555666666665432 2223
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHH
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV 197 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~ 197 (504)
+.+.|-|.+.|.++...|+..+++.+..+. +...|+.+-+
T Consensus 374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL-~~~~LRLIFQ 413 (800)
T 3oc3_A 374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS-EESIDFLVAE 413 (800)
T ss_dssp SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 477888888888888888888888776665 3334443333
No 93
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.03 E-value=2.8 Score=40.06 Aligned_cols=131 Identities=20% Similarity=0.265 Sum_probs=91.8
Q ss_pred HHHHHHHcccc----cCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch
Q 010666 74 ADILGAILPCI----SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 149 (504)
Q Consensus 74 p~iL~~lLp~L----sd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P 149 (504)
|++++.+.|.| .-.++.+|-=-.-+.++.++.-+ --++.++.-+.-.+.+.+..-|++||++|.-+-+..|
T Consensus 102 Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 102 PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 44444444433 33556666444444444444321 1145666677778889999999999999999988888
Q ss_pred hhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccchhhhhh
Q 010666 150 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 213 (504)
Q Consensus 150 ~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~~~F~~fm~~LL~lF~~dr~LLe~R 213 (504)
+-+-+|.+++ ...|.|.++-|...+.+-|-.++.-..-|++.+..-++-|.....++...
T Consensus 177 ~yv~PfLprL----~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 177 KYVNPFLPRI----INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp HHHGGGHHHH----HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred cccCcchHHH----HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8777766554 55667877788888999999999644449999999999998766666554
No 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.83 E-value=0.61 Score=49.36 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=114.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH--hccCCCCchHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhcCCc---cccccHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGGD---QLVPYYAD 75 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLke--Ik~~~~vD~~~iI~ILv~~l-~s~e~~iRltaL~WI~efl~i~~~---~llpylp~ 75 (504)
|..++++|+..|-.+|..+=.. -.....+--...|+.|+..+ .+.++.++..++.=|..+...+++ .+.. -.+
T Consensus 252 L~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~-~~G 330 (458)
T 3nmz_A 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA-VDG 330 (458)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-STT
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-hcC
Confidence 4556777877777666554210 00000011124577888864 556777887766655555543322 1110 145
Q ss_pred HHHHHcccccCCch----HHHHHHHHHHHHHHHhhcCCCCCC---ChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 010666 76 ILGAILPCISDKEE----KIRVVARETNEELRAIKADPADGF---DVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 148 (504)
Q Consensus 76 iL~~lLp~Lsd~~~----eIR~~A~~~N~~Ll~li~~~~~~~---d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~ 148 (504)
.+..+...|.++.+ +|++.|..+...+-..+....+.. --...+..|...+.+.+..++..|..=|..|-...
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 56666666666543 588888887777665432211110 00234677888898888888888876666665445
Q ss_pred hhhhhhc-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 149 RTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 149 P~~~l~~-~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
|+..-.. -.+.+|.|...|...+++|...+...|..|+.
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 5544333 24789999999999999999999999999984
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.49 E-value=8.4 Score=37.50 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=116.9
Q ss_pred HHHHHHHHhccCC---------------CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 16 ALWEFLQEIKNSP---------------SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 16 lL~~FLkeIk~~~---------------~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
-+.+++++|.... ..|.++++++-..-......+.|..|+..|..+ . -.+++|..+
T Consensus 38 ~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~i 108 (240)
T 3l9t_A 38 YVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFM 108 (240)
T ss_dssp HHHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHH
Confidence 4666666665431 446788888877777777789999999965544 1 237888888
Q ss_pred cc-cccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHH
Q 010666 81 LP-CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI 159 (504)
Q Consensus 81 Lp-~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~l 159 (504)
.+ .-.|+.=.||+++..+-..++... +++.++.++..-..+++..+|-+|.+=+.-.- +.| +....-+.+
T Consensus 109 r~~va~D~~WrVre~lA~a~~~~~~~~-------~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~-~~~-~~k~dp~~l 179 (240)
T 3l9t_A 109 RDEVSKDNNWRVQEVLAKAFDEFCKKI-------EYKKALPIIDEWLKSSNLHTRRAATEGLRIWT-NRP-YFKENPNEA 179 (240)
T ss_dssp HHTGGGCSCHHHHHHHHHHHHHHHHHH-------CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGG-GST-TTTTCHHHH
T ss_pred HHHhCCCCCccHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHh-ccc-hhhcCHHHH
Confidence 87 555777899999988887776522 22346677777788999999888875332111 112 223344456
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCCh
Q 010666 160 FDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 227 (504)
Q Consensus 160 fp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a 227 (504)
+|.|-+...|++.=|..-.---|..||. +.+--..| ++--..+. ....+|+|.-++.|.+
T Consensus 180 l~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~----~~~w~~~~----~~~~~i~k~A~k~l~~ 240 (240)
T 3l9t_A 180 IRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE----LKNWKLES----KEINQVYKLASKFIDA 240 (240)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH----HHTCCCCS----HHHHHHHHHHTTTCC-
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH----HHHhhccC----HhHHHHHHHHHhhccC
Confidence 7766555566666666555577888874 33333333 22222222 2346788888777653
No 96
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.28 E-value=0.67 Score=44.42 Aligned_cols=94 Identities=10% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhh-HHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHHH
Q 010666 159 IFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQH-FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELS 235 (504)
Q Consensus 159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~-F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~La 235 (504)
.+..+..+|..+...+...++++|+-+|. +++- ++.++..+-.+ +.- +.+ .-|..+-
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~-~~~----~e~---------------~RF~~lv 156 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER-AEM----DEV---------------ERFQPLL 156 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH-HHH----HTS---------------CTTHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-HHh----CCc---------------chHHHHH
Confidence 45778888888889999999999999993 3234 77777776542 210 111 1233444
Q ss_pred HhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010666 236 TILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 273 (504)
Q Consensus 236 ~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 273 (504)
+.+....+.+|.....+..|.++-+.+++ ++|..||+
T Consensus 157 ~~l~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ 193 (233)
T 2f31_A 157 DGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRS 193 (233)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHH
Confidence 44555688999999999999888776554 46777765
No 97
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=91.03 E-value=7.3 Score=43.98 Aligned_cols=220 Identities=12% Similarity=0.162 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCc---cccccHHHHHHHHcccccCCchH---HHHHHHHHHHHHHHhhc
Q 010666 34 RMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEK---IRVVARETNEELRAIKA 107 (504)
Q Consensus 34 ~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~---~llpylp~iL~~lLp~Lsd~~~e---IR~~A~~~N~~Ll~li~ 107 (504)
..|+.|+..+.+.++.+|..+++=|..+- ..+. .++. .+.+..+++.+....+. +|..|..+...+.-..
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~- 532 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT- 532 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-
Confidence 48999999999999999998886555553 3332 2332 36778888888887544 8888888877766321
Q ss_pred CCCC---CCChHhHHHHHHHhcCC-CCH-------------HHHHHHHHHHHHHHhhc-------hhhhhhchhHHHHHH
Q 010666 108 DPAD---GFDVGPILSIATRQLSS-EWE-------------ATRIEALHWISTLLNRH-------RTEVLHFLNDIFDTL 163 (504)
Q Consensus 108 ~~~~---~~d~~~iv~vL~~~L~s-~~e-------------~TRlaaL~WL~~L~~k~-------P~~~l~~~~~lfp~L 163 (504)
++.. +-+.-..+..|...|.. ... .-+..||.=|..|-... ..+|+.. .+.+|.|
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L 611 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTI 611 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHH
Confidence 1000 11112677888888762 221 22667777777776654 2223321 3678999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhhchh-----hHH----H---HHHHHHhhccccchhhhhhHHHHHHHHhhcCCh----
Q 010666 164 LKALSDPSDEVVLLVLEVHACIAKDLQ-----HFR----Q---LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA---- 227 (504)
Q Consensus 164 LksLSD~sdeVv~~~L~LLa~Is~~~~-----~F~----~---fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~a---- 227 (504)
...|.++++.|...+.++++.++.++. +|. . =+.-|+.+...+..-...-+.-++.+++..-+.
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999999999999999995432 331 1 155667777665442222233355665432221
Q ss_pred ----HHHHHHHHHhhccc-cChHHHHHHHHHHHHHh
Q 010666 228 ----ERVYRELSTILEGE-ADLDFACTMVQALNLIL 258 (504)
Q Consensus 228 ----E~Iy~~La~iL~~~-~Dl~F~~~mVq~Ln~iL 258 (504)
++-...+-+++.+. +|.+-....+-.+.++.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 22333444444442 45555555555555554
No 98
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.13 E-value=2.1 Score=46.72 Aligned_cols=255 Identities=14% Similarity=0.136 Sum_probs=142.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHh-ccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcC-C---ccccccHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEI-KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-G---DQLVPYYAD 75 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeI-k~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~-~---~~llpylp~ 75 (504)
+|..++++++..|-..|..+-..= .....+--..-|+.|+..+.+.++.+|..|+.=|..+..-. + ..++. .+
T Consensus 56 ~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--~G 133 (584)
T 3l6x_A 56 MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN--CD 133 (584)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH--TT
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--cC
Confidence 467778888877766665554210 00001222346799999999999999998876666554321 1 12222 25
Q ss_pred HHHHHcccccC-CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc------------------CCCCHHHHHH
Q 010666 76 ILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL------------------SSEWEATRIE 136 (504)
Q Consensus 76 iL~~lLp~Lsd-~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L------------------~s~~e~TRla 136 (504)
.+..++..|.. ++.++++.|..+...|-. ..+....+ ....+..|+..+ ..+.+..+..
T Consensus 134 aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I-~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~n 211 (584)
T 3l6x_A 134 GVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEI-VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN 211 (584)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHH-HHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHH-HhccHHHHHHHHhcccccccccccccccccccccHHHHHH
Confidence 56666667765 577888888877766643 11100001 012234444433 1224566666
Q ss_pred HHHHHHHHHhhch--hhhhhchhHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhc---h----hhH---------
Q 010666 137 ALHWISTLLNRHR--TEVLHFLNDIFDTLLKALS------DPSDEVVLLVLEVHACIAKD---L----QHF--------- 192 (504)
Q Consensus 137 aL~WL~~L~~k~P--~~~l~~~~~lfp~LLksLS------D~sdeVv~~~L~LLa~Is~~---~----~~F--------- 192 (504)
|..=|..|-...+ .+.+--..++.+.|+..|. +.++.++..++-.|..+|-. + ..|
T Consensus 212 Aa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~ 291 (584)
T 3l6x_A 212 TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVAN 291 (584)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----------
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccc
Confidence 6655555543332 2333334677777777664 46789999999999888721 1 011
Q ss_pred ---------------HHHHHHHHhhccc-cchhhhhhHHHHHHHHhhcCCh-----------HHHHHHHHHhhccccChH
Q 010666 193 ---------------RQLVVFLVHNFRV-DNSLLEKRGALIIRRLCVLLDA-----------ERVYRELSTILEGEADLD 245 (504)
Q Consensus 193 ---------------~~fm~~LL~lF~~-dr~LLe~Rg~lIIRqLC~~L~a-----------E~Iy~~La~iL~~~~Dl~ 245 (504)
...+..|+.++.. ++.-..+.+.-.+++||..-.+ +.....|.+.|.. .|.+
T Consensus 292 ~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s-~~~~ 370 (584)
T 3l6x_A 292 NTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN-EHER 370 (584)
T ss_dssp ----CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC-SCHH
T ss_pred cccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC-CCHH
Confidence 1334555666642 2333344556688999864321 3445555555543 3445
Q ss_pred HHHHHHHHHHHHhcC
Q 010666 246 FACTMVQALNLILLT 260 (504)
Q Consensus 246 F~~~mVq~Ln~iLLT 260 (504)
-....+..|-++-..
T Consensus 371 v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 371 VVKAASGALRNLAVD 385 (584)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 555566666555433
No 99
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.94 E-value=11 Score=44.23 Aligned_cols=209 Identities=14% Similarity=0.115 Sum_probs=114.2
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHH-HHHHHHhc--C-CccccccHHHHHHHH---cccccCCch------------
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKL--G-GDQLVPYYADILGAI---LPCISDKEE------------ 89 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~-WI~efl~i--~-~~~llpylp~iL~~l---Lp~Lsd~~~------------ 89 (504)
..++..+++.+......++..+=..++. |..-+-.. + ...+.+|++.++.++ +..+.++..
T Consensus 346 ~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D 425 (1204)
T 3a6p_A 346 PSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFD 425 (1204)
T ss_dssp CTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcc
Confidence 4578999999999998888777666664 65443332 1 234668999999999 555544321
Q ss_pred -----HH---HHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCC-----------------------CCH-----HH
Q 010666 90 -----KI---RVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-----------------------EWE-----AT 133 (504)
Q Consensus 90 -----eI---R~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s-----------------------~~e-----~T 133 (504)
|- -....+...++++.+.......-+.-+.+.+...+.+ .++ ++
T Consensus 426 ~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea 505 (1204)
T 3a6p_A 426 FDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEA 505 (1204)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHH
Confidence 10 0011111222222222100000112222333333322 011 22
Q ss_pred HHHHHHHHHHHHhhchhhhhhchh-HHHHHHHHhc---CCCCHHHHHHHHHHHHHHh----hchhhHHHHHHHHHhhccc
Q 010666 134 RIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKAL---SDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRV 205 (504)
Q Consensus 134 RlaaL~WL~~L~~k~P~~~l~~~~-~lfp~LLksL---SD~sdeVv~~~L~LLa~Is----~~~~~F~~fm~~LL~lF~~ 205 (504)
-..+++.+..-..+..+ -++.. .++|.|+..+ ..+++.+....+.+|...+ .+.+++..++..++..+..
T Consensus 506 ~~~~leav~~~~~~~~e--~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~ 583 (1204)
T 3a6p_A 506 MTLFLESVITQMFRTLN--REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTF 583 (1204)
T ss_dssp HHHHHHHHHHHHHHHSC--TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccc--cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhcc
Confidence 33445555443311110 02222 2444444442 4567888889999988776 4678999999999877643
Q ss_pred ------------cchhhhhhHHHHHHHHhhcCCh------HHHHHHHHHhhc
Q 010666 206 ------------DNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILE 239 (504)
Q Consensus 206 ------------dr~LLe~Rg~lIIRqLC~~L~a------E~Iy~~La~iL~ 239 (504)
..+-+..++..-+++||...+. +.|+..+..++.
T Consensus 584 ~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 584 ETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp CTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 1234456667777888887754 567777777665
No 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=89.75 E-value=2.3 Score=40.94 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=75.0
Q ss_pred CChHhHHHHHHHhcCCCCH--HHHHHHHHHHHHHHhhchh-hhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhch
Q 010666 113 FDVGPILSIATRQLSSEWE--ATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL 189 (504)
Q Consensus 113 ~d~~~iv~vL~~~L~s~~e--~TRlaaL~WL~~L~~k~P~-~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~~~ 189 (504)
.++.-.+..++..|.++++ ..+..|..+|..|-...+. +..=...+.+|.|+..|+.++++|...+...|..|+.+.
T Consensus 4 ~~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp SCCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cchhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 3455667788888888877 7888888999888766543 322233467799999999999999999999999999643
Q ss_pred hhHHHH------HHHHHhhcc-ccchhhhhhHHHHHHHHhh
Q 010666 190 QHFRQL------VVFLVHNFR-VDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 190 ~~F~~f------m~~LL~lF~-~dr~LLe~Rg~lIIRqLC~ 223 (504)
..-+.. +..|+++++ +...-...-+.-.+.+|+.
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 333332 344566665 2222223333445666664
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=87.74 E-value=7.9 Score=37.67 Aligned_cols=136 Identities=11% Similarity=-0.019 Sum_probs=93.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHh-cCCccccccHHHHHHHH
Q 010666 3 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVK-LGGDQLVPYYADILGAI 80 (504)
Q Consensus 3 sDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~-s~e~~iRltaL~WI~efl~-i~~~~llpylp~iL~~l 80 (504)
.|+..+||-.|-.+|+.+ . ..+.+.+.+...+. ...=-+|-.+-.=+.+++. ..++. .+..+
T Consensus 81 ~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------~l~~~ 144 (240)
T 3l9t_A 81 QSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------ALPII 144 (240)
T ss_dssp TCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------THHHH
T ss_pred hCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------HHHHH
Confidence 356668887776666655 2 22567777776332 2222344443333344443 44443 56677
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhchh
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 157 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~ 157 (504)
..-..|+++.||+.|.+.-.-.-+ .+....|.+.++.+|.....+++..+|-++=.||..+-+.+|+-+..+..
T Consensus 145 ~~W~~d~n~~VRR~Ase~~rpW~~---~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 145 DEWLKSSNLHTRRAATEGLRIWTN---RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHCSSHHHHHHHHHHTCSGGG---STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhhHHHhc---cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 788899999999999887532111 13445778889999999999999999999999999999999999886544
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=87.17 E-value=0.36 Score=56.07 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCCc-cccccHHH-HHHHHcccccCCch-HHHHH-HHHHHHHHHHhhcC-CCCCCChHhHHHHHHHhc
Q 010666 52 LTAITWINEFVKLGGD-QLVPYYAD-ILGAILPCISDKEE-KIRVV-ARETNEELRAIKAD-PADGFDVGPILSIATRQL 126 (504)
Q Consensus 52 ltaL~WI~efl~i~~~-~llpylp~-iL~~lLp~Lsd~~~-eIR~~-A~~~N~~Ll~li~~-~~~~~d~~~iv~vL~~~L 126 (504)
.|++.||..-+.-+.. .+.||+|. ++..++.+..+.+. |+... |..+ +..+.. +-..-..+.+++.+....
T Consensus 735 kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~----l~~ls~~~~~~~~~~~~l~~l~~~~ 810 (997)
T 1vsy_5 735 STIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRL----YAGLGYMPIRKNHVAAIVDYVCSSN 810 (997)
T ss_dssp HHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHH----HHHTSSSCCCHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 6999999998877644 37788888 78878887777654 55544 3333 333432 112222456777776656
Q ss_pred C-CCCHHHHHHHHHHHHHHHhhchhhhh-hchhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhch---hhHHHHHHHHH
Q 010666 127 S-SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL---QHFRQLVVFLV 200 (504)
Q Consensus 127 ~-s~~e~TRlaaL~WL~~L~~k~P~~~l-~~~~~lfp~LLksLSD~s-deVv~~~L~LLa~Is~~~---~~F~~fm~~LL 200 (504)
. +.+- +|.++|.-+..++=++==-+. .....++..+++.|.|+. -||...|-++|+-+-... ..-...+..+-
T Consensus 811 ~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~ 889 (997)
T 1vsy_5 811 VALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFA 889 (997)
T ss_dssp TTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHT
T ss_pred hcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 5 4566 999999997666554311111 122467889999999999 999999999999985322 22234445554
Q ss_pred hhc
Q 010666 201 HNF 203 (504)
Q Consensus 201 ~lF 203 (504)
+.|
T Consensus 890 ~~~ 892 (997)
T 1vsy_5 890 KGL 892 (997)
T ss_dssp TSS
T ss_pred HHH
Confidence 555
No 103
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.13 E-value=11 Score=36.79 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=65.6
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHH
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTL-LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFR 193 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L-~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~ 193 (504)
+.+++-|.+--..++ +.|+..|.=..+| .++.|. +.+.+++.+|.--.|++.+|..-..+.+.++| ...++..
T Consensus 15 ~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 15 AKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444 6999999888884 555664 56788888888788999999999999999999 5667788
Q ss_pred HHHHHHHhhcccc
Q 010666 194 QLVVFLVHNFRVD 206 (504)
Q Consensus 194 ~fm~~LL~lF~~d 206 (504)
+.+..|..+++.+
T Consensus 90 ~~l~~L~~Ll~d~ 102 (257)
T 3gs3_A 90 HVINVVSMLLRDN 102 (257)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCC
Confidence 8888888888754
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.83 E-value=11 Score=43.77 Aligned_cols=130 Identities=8% Similarity=0.050 Sum_probs=97.4
Q ss_pred ccccHHHHHHHHcccccC-----CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010666 69 LVPYYADILGAILPCISD-----KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST 143 (504)
Q Consensus 69 llpylp~iL~~lLp~Lsd-----~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~ 143 (504)
.-+|+|.++..++..+.+ +...||..+.-+.+..-+.+...++ -+..+++.|...+.++++...-+|-.=+..
T Consensus 489 e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~--~L~~vl~~L~~~l~~~~~~v~~~A~~al~~ 566 (1023)
T 4hat_C 489 EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN--FLRTVILKLFEFMHETHEGVQDMACDTFIK 566 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 568999999999988763 4455777777787776666654322 278999999999988888777777777888
Q ss_pred HHhhchhhhh--------hchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------chhhHHHHHHHHH
Q 010666 144 LLNRHRTEVL--------HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLV 200 (504)
Q Consensus 144 L~~k~P~~~l--------~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-------~~~~F~~fm~~LL 200 (504)
|-++++..+. +|++.++..+..+.++-.++-.....+-++.+.+ ..+++..+|..+.
T Consensus 567 l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN 638 (1023)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHH
Confidence 8888887774 5999999999998888777777777787777763 2345655555443
No 105
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=85.06 E-value=5.1 Score=46.49 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCCCc-HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCC---C---------ChHHHHHHHHHHHHHHhcCCc
Q 010666 1 MLSDSS-HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS---P---------DEFTRLTAITWINEFVKLGGD 67 (504)
Q Consensus 1 mLsDpn-~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s---~---------e~~iRltaL~WI~efl~i~~~ 67 (504)
+|.|+. .|||++|..+|..+++-.+ +..+..++|.-+..++.. . +.-.|..+|-=+..++.=.|=
T Consensus 851 ~L~D~q~~EVRe~Aa~tLsgll~c~~--~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py 928 (997)
T 1vsy_5 851 NLYNEQFVEVRVRAASILSDIVHNWK--EEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPY 928 (997)
T ss_dssp TTTCSSCHHHHHHHHHHHHHHHHSCC--SHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCC
Confidence 689999 9999999999999998641 111223566666666533 1 113567788888888888888
Q ss_pred cc--cccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC
Q 010666 68 QL--VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 108 (504)
Q Consensus 68 ~l--lpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~ 108 (504)
++ =+|+|++|..+-...+|+.+ |+..+.++..+|.+-=++
T Consensus 929 ~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 929 VFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp CSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred CCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 77 56999999999999999888 999999999999876544
No 106
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.01 E-value=78 Score=36.96 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-----CCccccccHHHH
Q 010666 2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL-----GGDQLVPYYADI 76 (504)
Q Consensus 2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i-----~~~~llpylp~i 76 (504)
+.+|+.+.|++|+ ++|.++++++.. ......+| . .+.++.+|.+++.-++..+.- ++++-...=..+
T Consensus 37 ly~p~~~~r~qA~----~~L~q~q~sp~a-w~~~~~iL-~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~L 108 (1073)
T 3gjx_A 37 LYHGEGAQQRMAQ----EVLTHLKEHPDA-WTRVDTIL-E--FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYV 108 (1073)
T ss_dssp TTCSSHHHHHHHH----HHHHTSSCCSCH-HHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHH----HHHHHHHcCchH-HHHHHHHh-c--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 4567788888887 566777766421 22223333 2 256899999999999999884 333322222333
Q ss_pred HHHHcccccC-----CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---c
Q 010666 77 LGAILPCISD-----KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR---H 148 (504)
Q Consensus 77 L~~lLp~Lsd-----~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k---~ 148 (504)
++.+...-++ .++-++.....+-..+.+.- .++ +....+.-+...+. .++..+...|.=|..|.+. .
T Consensus 109 l~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~--~P~--~Wp~fi~dLv~~~~-~~~~~~~~~L~IL~~L~EEV~d~ 183 (1073)
T 3gjx_A 109 VGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE--WPK--HWPTFISDIVGASR-TSESLCQNNMVILKLLSEEVFDF 183 (1073)
T ss_dssp HHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH--TTT--TCTTHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHccCccccccchHHHHHHHHHHHHHHHHh--Chh--hccHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence 4433333222 23445433333333333221 111 12233333333222 2344455555545444443 1
Q ss_pred -------------hhhhhhchhHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 010666 149 -------------RTEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 149 -------------P~~~l~~~~~lfp~LLksLSD-~sdeVv~~~L~LLa~Is 186 (504)
.+.|-..++.++..+...|.. .+++++..+|+.+.+..
T Consensus 184 ~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~ 235 (1073)
T 3gjx_A 184 SSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFL 235 (1073)
T ss_dssp HHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 112334455566655555543 46788888888888765
No 107
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.90 E-value=24 Score=36.61 Aligned_cols=135 Identities=16% Similarity=0.248 Sum_probs=92.6
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHH
Q 010666 116 GPILSIATRQLSSEWEATRIEALHWISTL-LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFR 193 (504)
Q Consensus 116 ~~iv~vL~~~L~s~~e~TRlaaL~WL~~L-~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~ 193 (504)
+.+++.|.+--...+ ..|+..|+=+.+| .++.|. ..+.+||.++.--.|++.+|..-..+.++++| .+.++..
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~ 99 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL 99 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443333 4799999999996 667874 67888999999889999999999999999999 4667788
Q ss_pred HHHHHHHhhccccch-hh----hhhHH---HHHHHHhhcCCh----HHHHHHHHHhhcc-------cc------ChHHHH
Q 010666 194 QLVVFLVHNFRVDNS-LL----EKRGA---LIIRRLCVLLDA----ERVYRELSTILEG-------EA------DLDFAC 248 (504)
Q Consensus 194 ~fm~~LL~lF~~dr~-LL----e~Rg~---lIIRqLC~~L~a----E~Iy~~La~iL~~-------~~------Dl~F~~ 248 (504)
+.+..|..++..+.. .+ .+=++ .++|.+|..=+. |..|..+..+-.. +. =++|+.
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle 179 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVE 179 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 888888888874422 21 22222 377888876552 5677666655332 11 167888
Q ss_pred HHHHHHH
Q 010666 249 TMVQALN 255 (504)
Q Consensus 249 ~mVq~Ln 255 (504)
++|++..
T Consensus 180 ~VIl~qS 186 (386)
T 3o2t_A 180 GLIVTLS 186 (386)
T ss_dssp HHHHHTS
T ss_pred HHHHHhC
Confidence 8776553
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.37 E-value=51 Score=35.27 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc
Q 010666 47 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 126 (504)
Q Consensus 47 e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L 126 (504)
.+..+..|=..|.-|..--|+ .--+-+++++-...|.+..||..|.+- |-.++++ -.+..++.||++.|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~---Lp~~ck~----~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKE---LPQFATG----ENLPRVADILTQLL 109 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHH---GGGGCCT----TCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHh---hHHHhhh----hhhhhHHHHHHHHH
Confidence 455666666777666554332 334557888888899999999877654 4444443 33899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010666 127 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 184 (504)
Q Consensus 127 ~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~ 184 (504)
..+...-+-++=+=|..|++..|...+. ++|..+.+ .++.|..+++.-|+.
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl~---~lf~~i~~----~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTLG---GLFSQILQ----GEDIVRERAIKFLST 160 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHH----SCHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHHH---HHHHHHcc----cchHHHHHHHHHHHH
Confidence 9887777777778889999999987663 55666655 247888888887765
No 109
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=78.65 E-value=59 Score=32.82 Aligned_cols=182 Identities=12% Similarity=0.184 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHH
Q 010666 54 AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEAT 133 (504)
Q Consensus 54 aL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~T 133 (504)
+++-+..+++--+..+.|++|.|+++++-| +++.++.- +.+-++-
T Consensus 94 VL~l~~tii~kl~~~i~~~vp~Il~~VFe~----------------------------------TL~MI~~d-f~eyPeh 138 (321)
T 1w9c_A 94 VLSTMAIIVNKLGGHITAEIPQIFDAVFEC----------------------------------TLNMINKD-FEEYPEH 138 (321)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----------------------------------HHHHHSST-TTCSHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----------------------------------HHHHHhcc-cccChHH
Confidence 455556666666666777777777666422 22222221 1455667
Q ss_pred HHHHHHHHHHHHhhchhhhhhchhHHHHHH----HHhcCCCCHHHHHHHHHHHHHHh----hc----hhhHHHHHHHHHh
Q 010666 134 RIEALHWISTLLNRHRTEVLHFLNDIFDTL----LKALSDPSDEVVLLVLEVHACIA----KD----LQHFRQLVVFLVH 201 (504)
Q Consensus 134 RlaaL~WL~~L~~k~P~~~l~~~~~lfp~L----LksLSD~sdeVv~~~L~LLa~Is----~~----~~~F~~fm~~LL~ 201 (504)
|++=.++|..+-..+..-++..-+..|..+ +=...++..+|-...|+.+.++- .+ .++|+.|...+++
T Consensus 139 R~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~ 218 (321)
T 1w9c_A 139 RTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQ 218 (321)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 777777777777777777766555544444 44488999999998887765543 21 2334444444432
Q ss_pred -hcc--cc--chhhhhhHHHHHHHHhhcC----------------ChHHHHHHHHHhhccc-c--ChHHHHHHHHHHHHH
Q 010666 202 -NFR--VD--NSLLEKRGALIIRRLCVLL----------------DAERVYRELSTILEGE-A--DLDFACTMVQALNLI 257 (504)
Q Consensus 202 -lF~--~d--r~LLe~Rg~lIIRqLC~~L----------------~aE~Iy~~La~iL~~~-~--Dl~F~~~mVq~Ln~i 257 (504)
.|. +| ++--=+.=..|+++|.... |.+-|..-+++.|... . ..+=+..+|+-|=
T Consensus 219 ~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf-- 296 (321)
T 1w9c_A 219 HIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLF-- 296 (321)
T ss_dssp HHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH--
T ss_pred HHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--
Confidence 222 23 2211112245778777322 3455666666666432 1 1222222333322
Q ss_pred hcCchhHHHHHHHHHh
Q 010666 258 LLTSSELSELRDLLKK 273 (504)
Q Consensus 258 LLTs~El~~lR~~L~~ 273 (504)
=...+..+||+.||+
T Consensus 297 -~~~~d~~~Fk~~lrD 311 (321)
T 1w9c_A 297 -SLNQDIPAFKEHLRD 311 (321)
T ss_dssp -HTTTCHHHHHHHHHH
T ss_pred -HccCCHHHHHHHHHH
Confidence 224577788888887
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=77.95 E-value=3.6 Score=45.48 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=95.6
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcC-CCC-CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh-
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKAD-PAD-GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT- 150 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~-~~~-~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~- 150 (504)
++-+..++.+|...+..+|-.|.++...|..--.+ ..+ -++-..-+..|..-|.++.|..|-.|+--|..|-+.+++
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 46678888899999999999998888776643211 000 011124567788888999999999999999999998875
Q ss_pred -hhhhchhHHHHHHHHhcCCCC----HHHHHHHHHHHHHHh----hchhhHHH--HHHHHHhhccc
Q 010666 151 -EVLHFLNDIFDTLLKALSDPS----DEVVLLVLEVHACIA----KDLQHFRQ--LVVFLVHNFRV 205 (504)
Q Consensus 151 -~~l~~~~~lfp~LLksLSD~s----deVv~~~L~LLa~Is----~~~~~F~~--fm~~LL~lF~~ 205 (504)
|++.| ++.|+.|+.-+..+. -.||.-+|.++..+. +|+.+|+. .+..|..+|..
T Consensus 201 QklVAF-EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~ 265 (651)
T 3grl_A 201 QKIVAF-ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV 265 (651)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCC
T ss_pred HHHHHH-hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCC
Confidence 55553 455666666555544 499999999999998 47888874 67777777653
No 111
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=77.92 E-value=64 Score=32.82 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHhcCCccccc-cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 126 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llp-ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L 126 (504)
+.....+++-+--+...+ +.+=. -...+.-.+++++..++.++|++.--.-..+.+. ++ +.--++|.+.+-+
T Consensus 41 ~~kc~~~l~kll~l~~~G-~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~----~~--e~iLv~Nsl~kDl 113 (355)
T 3tjz_B 41 PRKCAHILTKILYLINQG-EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI----AE--DVIIVTSSLTKDM 113 (355)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT----SS--CGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----HH--HHHHHHHHHHhhc
Confidence 333344555555566665 22210 1456677788899999999999887776655444 12 2337789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhccc
Q 010666 127 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRV 205 (504)
Q Consensus 127 ~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~ 205 (504)
.+.++..|-.||+=|-.+.. .+ ..+.+.+.+-++|.|.++-|...|+-...++. .+.+--+.|+..+-++...
T Consensus 114 ~~~N~~iR~lALRtL~~I~~---~~---m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d 187 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQITD---ST---MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASS 187 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHCC---TT---THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTC
T ss_pred CCCcHhHHHHHHHHHhcCCC---HH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Confidence 99999999999988776633 22 45678888999999999999999998888777 3445556677766666643
No 112
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=75.79 E-value=35 Score=40.01 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=107.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHH---HHHHHHHHHHhcCC-----------cccc
Q 010666 5 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRL---TAITWINEFVKLGG-----------DQLV 70 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRl---taL~WI~efl~i~~-----------~~ll 70 (504)
+.+-||+..-.++....+.-- .-..+.+++-|+..+.+ ++..+. .++..|.|=+.... ..|.
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~---p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREW---PQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHS---TTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhC---cccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 457788877777777655421 12467889999888876 333333 34444433211111 1245
Q ss_pred ccHHHHHHHHcccccCC-------------------chHHHHHHHHHHHHHHHhhcCCCCCCCh-------HhHHHHHHH
Q 010666 71 PYYADILGAILPCISDK-------------------EEKIRVVARETNEELRAIKADPADGFDV-------GPILSIATR 124 (504)
Q Consensus 71 pylp~iL~~lLp~Lsd~-------------------~~eIR~~A~~~N~~Ll~li~~~~~~~d~-------~~iv~vL~~ 124 (504)
..+|+|+..+...+.+. +.+++..|.++-..++. -++. ..+++.+..
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~-------Wi~~~~i~~~~~~ll~~l~~ 256 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID-------WVSMSHITAENCKLLEILCL 256 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT-------TSCHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh-------ccCHHHHHhccchHHHHHHH
Confidence 56778877777766542 12233333333322222 1222 236777665
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhc--hhh---hhhchh-HHHHHHHHhc--------CCCCHHHHHHHHHHHHHHh----
Q 010666 125 QLSSEWEATRIEALHWISTLLNRH--RTE---VLHFLN-DIFDTLLKAL--------SDPSDEVVLLVLEVHACIA---- 186 (504)
Q Consensus 125 ~L~s~~e~TRlaaL~WL~~L~~k~--P~~---~l~~~~-~lfp~LLksL--------SD~sdeVv~~~L~LLa~Is---- 186 (504)
.+. ++..|.+|++=|..+..++ |+. ++.++. ..+..++..+ .|.+.++..+.-+++..++
T Consensus 257 ~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~ 334 (1204)
T 3a6p_A 257 LLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLC 334 (1204)
T ss_dssp GGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 544 4668999999999999877 554 333332 1122333332 2334567777777777765
Q ss_pred ---------hchhhHHHHHHHHHhhcccc
Q 010666 187 ---------KDLQHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 187 ---------~~~~~F~~fm~~LL~lF~~d 206 (504)
.....|..|+..++.++.++
T Consensus 335 ~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 335 ALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp HHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 14567889999999888765
No 113
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=75.35 E-value=20 Score=33.92 Aligned_cols=93 Identities=10% Similarity=-0.064 Sum_probs=66.1
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
.+..+.+...|+++-+|+.|...- +.. ....|+..+..++...+.+++..+|.++=-||.....+.|+.+.+|
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~---l~~----~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ---LKY----KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT---TTC----GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH---HHH----HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 445555666666777777776542 211 2346778888888889999999999999999999999999999988
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010666 156 LNDIFDTLLKALSDPSDEVVLLVLEVHAC 184 (504)
Q Consensus 156 ~~~lfp~LLksLSD~sdeVv~~~L~LLa~ 184 (504)
++.= .-++-+...+++-+.+
T Consensus 205 l~~~---------~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 205 VQNN---------ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp HHHS---------CCCHHHHHHHTTTTHH
T ss_pred HHHC---------CCCHHHHHHHHHhccc
Confidence 7641 2345556666555443
No 114
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=74.25 E-value=9.1 Score=33.03 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=70.8
Q ss_pred cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh----
Q 010666 72 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR---- 147 (504)
Q Consensus 72 ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k---- 147 (504)
++-.-+...|..|+.+.+.|+.++.=+-.. .-..+.||+++..++.......|+..|==+..+...
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~ 74 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIEN----------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRK 74 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhccc
Confidence 445667778888888888888877666532 123678999999999888888999999555555544
Q ss_pred chhhhhhchhHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q 010666 148 HRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHAC 184 (504)
Q Consensus 148 ~P~~~l~~~~~lfp~LLksLSD~s-deVv~~~L~LLa~ 184 (504)
++..+.+.+...+|.++....|+. -.-+.+.+.+|.+
T Consensus 75 ~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 75 NAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWED 112 (132)
T ss_dssp TCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 344556667777887777776653 2444555555554
No 115
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.10 E-value=85 Score=31.95 Aligned_cols=187 Identities=15% Similarity=0.174 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcc---cccc---HHHHHHHHcccccCCc------hHHHHHHH----
Q 010666 33 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ---LVPY---YADILGAILPCISDKE------EKIRVVAR---- 96 (504)
Q Consensus 33 ~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~---llpy---lp~iL~~lLp~Lsd~~------~eIR~~A~---- 96 (504)
..++..|+.++..-+-+.|.-+..-...++.-.... .+.| -|+|++.++.+-.+++ .-+|+++.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 456777888888778777776666555555543221 2223 3899999999998876 22443331
Q ss_pred --HHH-----HHHHHhhcCCC----------------C---------CCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010666 97 --ETN-----EELRAIKADPA----------------D---------GFDVGPILSIATRQLSSEWEATRIEALHWISTL 144 (504)
Q Consensus 97 --~~N-----~~Ll~li~~~~----------------~---------~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L 144 (504)
-+. ..|.+.+..+. . .-+|+........-+.+++=.||.-+|+-|-.|
T Consensus 157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 010 12333333211 0 135777777777777899999999999999988
Q ss_pred Hhhch--hhhhhchhH--HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------------chhhHHHHHHHHHhhccc-
Q 010666 145 LNRHR--TEVLHFLND--IFDTLLKALSDPSDEVVLLVLEVHACIAK--------------DLQHFRQLVVFLVHNFRV- 205 (504)
Q Consensus 145 ~~k~P--~~~l~~~~~--lfp~LLksLSD~sdeVv~~~L~LLa~Is~--------------~~~~F~~fm~~LL~lF~~- 205 (504)
+--.+ .-|..|+++ -+-.++.-|.|+|..|--.|.-|..--.- |.+-+-.| +.-|.+
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~f----l~~f~~d 312 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF----LSKFQND 312 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH----HHHTTTT
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHH----HHhCCCC
Confidence 87633 455666663 57778888999999998888877665442 22223222 334443
Q ss_pred ---cchhhhhhHHHHHHHHhhc
Q 010666 206 ---DNSLLEKRGALIIRRLCVL 224 (504)
Q Consensus 206 ---dr~LLe~Rg~lIIRqLC~~ 224 (504)
|..+.++| +++|+++-.+
T Consensus 313 ~~eDeqF~dEK-~~lI~~I~~L 333 (341)
T 1upk_A 313 RTEDEQFNDEK-TYLVKQIRDL 333 (341)
T ss_dssp C-CCSHHHHHH-HHHHHHHHTC
T ss_pred CcchhhHHHHH-HHHHHHHHhC
Confidence 45677777 8899988654
No 116
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=72.80 E-value=39 Score=29.61 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=66.4
Q ss_pred HHHHHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 75 DILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
.|-.+.=+.+..++ .-+-+.|..+| . +...-...+..+...+.+.++.+.+-||.=|..+.+.++..+.
T Consensus 9 ~iekAT~~~l~~~dw~~ileicD~I~--------~--~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~ 78 (140)
T 3ldz_A 9 DVEKATSEMNTAEDWGLILDICDKVG--------Q--SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFH 78 (140)
T ss_dssp HHHHHTCTTSSSCCHHHHHHHHHHHT--------T--STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHH--------C--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 33344444454444 23444454444 2 2233467788999999999999999999999999998877665
Q ss_pred hch-h-HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 154 HFL-N-DIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 154 ~~~-~-~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
..+ + ..+..+.+.++..+++|..+.++++..-+
T Consensus 79 ~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 79 LEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 221 1 22223334444567899999999987765
No 117
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.47 E-value=39 Score=30.49 Aligned_cols=106 Identities=8% Similarity=0.048 Sum_probs=70.9
Q ss_pred ccHHHHHHHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhch
Q 010666 71 PYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR 149 (504)
Q Consensus 71 pylp~iL~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P 149 (504)
||--.|=.+.-+.+..++ .-+-++|..+|.. ...-...+..|..++.+.++.+++-||.=|..+...++
T Consensus 15 p~~~~IekATs~~~~~~Dw~~~leicD~I~~~----------~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG 84 (163)
T 1x5b_A 15 PFEQDVEKATNEYNTTEDWSLIMDICDKVGST----------PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCG 84 (163)
T ss_dssp TTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHS----------SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 344444455555655555 3466666666642 22346778899999999999999999999999999988
Q ss_pred hhhhhchh-H-HHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 010666 150 TEVLHFLN-D-IFDTLLKALSD-PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 150 ~~~l~~~~-~-lfp~LLksLSD-~sdeVv~~~L~LLa~Is 186 (504)
..+...+. . ++..|.+-++. ..++|..++++++..-+
T Consensus 85 ~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 85 KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 77652221 1 22233333333 56799999999877765
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=66.35 E-value=1e+02 Score=35.67 Aligned_cols=124 Identities=13% Similarity=0.105 Sum_probs=71.9
Q ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc----h
Q 010666 74 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH----R 149 (504)
Q Consensus 74 p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~----P 149 (504)
..-|..++..+-+++.+.|+.|.+....+.+- ++. ......+|. .+.+..+|..|+.-+.....+. |
T Consensus 15 v~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s----p~a--w~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDN----PDA--WQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC----TTG--GGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC----ccH--HHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34566666666676666888888777665543 222 233334443 2456789998887777777653 2
Q ss_pred h-hhhhchhHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhch--hhHHHHHHHHHhhcccc
Q 010666 150 T-EVLHFLNDIFDTLLKALSDP-----SDEVVLLVLEVHACIAKDL--QHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 150 ~-~~l~~~~~lfp~LLksLSD~-----sdeVv~~~L~LLa~Is~~~--~~F~~fm~~LL~lF~~d 206 (504)
. +-...=+.++..+...-+++ ..-|+.+.-++++.|...+ +....|+..++..+.++
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~ 150 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS 150 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC
Confidence 2 22222234444444433333 3567777778888887432 44556666666666544
No 119
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=65.76 E-value=21 Score=42.63 Aligned_cols=125 Identities=11% Similarity=0.036 Sum_probs=98.3
Q ss_pred HHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHH
Q 010666 57 WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIE 136 (504)
Q Consensus 57 WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRla 136 (504)
|+.....-....+-.|+|.+|+..=-++...++.|+.-+...=..+.+... ...=+.|+..|..|..+.+...--+
T Consensus 382 ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd----~~~qqeVl~~Lv~hi~sg~~~eVd~ 457 (1323)
T 3s4w_B 382 LLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD----TYCQQEVVGALVTHVCSGTEAEVDT 457 (1323)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHhhhcCCCcHHHHH
Confidence 555555555567788999999998888989999999888877666666641 2222689999999987777666667
Q ss_pred HHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 137 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 137 aL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
||+=|..|...+|..+.++.. ++-.+|..+.+=+..=+.+...+++.++
T Consensus 458 ALdvL~~L~~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 458 ALDVLLELIVLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HHHHHHHHHHHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 888888888999998887555 5667789999888888888899998887
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=65.05 E-value=54 Score=35.81 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=55.8
Q ss_pred HcccccCCchHHHHHHHHHHHHHHHhhcCCC--CCCChHhHHH-HHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-
Q 010666 80 ILPCISDKEEKIRVVARETNEELRAIKADPA--DGFDVGPILS-IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF- 155 (504)
Q Consensus 80 lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~--~~~d~~~iv~-vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~- 155 (504)
++..|.+++++.|..|+.+...+.. ++. ..+....+|. ++...+.+++.++|.+|..=|.-|-.....++..+
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 4456788999999999999877642 211 1122345555 45666788999999999988877766554444433
Q ss_pred -hhHHHHHHHHhc
Q 010666 156 -LNDIFDTLLKAL 167 (504)
Q Consensus 156 -~~~lfp~LLksL 167 (504)
..+++|.|+..|
T Consensus 116 ~~~~il~~L~~~l 128 (684)
T 4gmo_A 116 YRLDVLTAIEHAA 128 (684)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHcChHHHHHHHH
Confidence 334666665544
No 121
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=64.92 E-value=2.1e+02 Score=33.33 Aligned_cols=132 Identities=12% Similarity=0.155 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhcCCcc---ccccHHHHHHHHcccccC-----CchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHH
Q 010666 50 TRLTAITWINEFVKLGGDQ---LVPYYADILGAILPCISD-----KEEKIRVVARETNEELRAIKADPADGFDVGPILSI 121 (504)
Q Consensus 50 iRltaL~WI~efl~i~~~~---llpylp~iL~~lLp~Lsd-----~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~v 121 (504)
+|.-.++-+..++.-+++. .-.++|.+++.++.--.. .+++|=.....+-.++-..+.. ++..|++.
T Consensus 753 ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~-----~~~~il~~ 827 (1073)
T 3gjx_A 753 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA-----EIPQIFDA 827 (1073)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGG-----GHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcch-----hHHHHHHH
Confidence 4555666777777766431 336778888888875554 4566655555555555444432 13334333
Q ss_pred H----HHhc---CCCCHHHHHHHHHHHHHHHhhchhhhhhchh----HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 122 A----TRQL---SSEWEATRIEALHWISTLLNRHRTEVLHFLN----DIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 122 L----~~~L---~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~----~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
+ ...+ +.+.+++|+.=.+.+.-+..+++.-++..-. .++..++=...++..+|...+|..+.++-
T Consensus 828 vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 828 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 2 2222 3778999999999999999999999987444 46667777789999999998887766543
No 122
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=63.52 E-value=6.7 Score=37.91 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=38.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
++.|++.+||.++-.- +. .++|..-+..+++.+|..+.. .+++ ..+
T Consensus 106 ll~D~d~~VR~~aA~~-------l~----------~~~L~~L~~D~d~~VR~~aA~------~l~~-----------~~l 151 (244)
T 1lrv_A 106 LMFDEDREVRITVADR-------LP----------LEQLEQMAADRDYLVRAYVVQ------RIPP-----------GRL 151 (244)
T ss_dssp TTTCSCHHHHHHHHHH-------SC----------TGGGGGGTTCSSHHHHHHHHH------HSCG-----------GGG
T ss_pred HHcCCCHHHHHHHHHh-------CC----------HHHHHHHHcCCCHHHHHHHHH------hcCH-----------HHH
Confidence 5788999999887642 11 013333356667778877765 2221 123
Q ss_pred cccccCCchHHHHHHHHH
Q 010666 81 LPCISDKEEKIRVVARET 98 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~ 98 (504)
...+.|++++||..+...
T Consensus 152 ~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp GGTTTCSCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHc
Confidence 455667778888776653
No 123
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.42 E-value=85 Score=27.91 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=57.5
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhh-chh-HHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 010666 115 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLN-DIFDTLLKALSD------PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 115 ~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~-~~~-~lfp~LLksLSD------~sdeVv~~~L~LLa~Is 186 (504)
-...+..|...+.+.++.+.+-||.=|..+.+.++..|.. ... .++..|.+.+++ ...+|..+.++++..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999888743 222 244456677765 46899999999988876
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.32 E-value=34 Score=30.02 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccCCchHHHHHHHHHHHHHHHhhc
Q 010666 30 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKA 107 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~ 107 (504)
..-..-+..|..|+.+.++-.++.|+.-+..++.-+|..+..-+ -++++.+...+...+++|++-+..+-........
T Consensus 38 ~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 38 TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 44566788899999999999999999999999999997665322 3344444444445677888887777776666554
Q ss_pred C
Q 010666 108 D 108 (504)
Q Consensus 108 ~ 108 (504)
+
T Consensus 118 ~ 118 (140)
T 3ldz_A 118 N 118 (140)
T ss_dssp T
T ss_pred C
Confidence 3
No 125
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=60.30 E-value=7.1 Score=37.73 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 1 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
++.|++..||.++-.-|. .+.|..-+..+++.+|..+..- +++ ..+
T Consensus 82 L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll~D~d~~VR~~aA~~------l~~-----------~~L 127 (244)
T 1lrv_A 82 LIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADR------LPL-----------EQL 127 (244)
T ss_dssp GTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHH------SCT-----------GGG
T ss_pred HccCcCHHHHHHHHHHCC-----------------HHHHHHHHcCCCHHHHHHHHHh------CCH-----------HHH
Confidence 368999999999974321 1356666788899999988873 222 235
Q ss_pred cccccCCchHHHHHHHH
Q 010666 81 LPCISDKEEKIRVVARE 97 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~ 97 (504)
...+.|++++||..+..
T Consensus 128 ~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 128 EQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGTTCSSHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 56688999999988876
No 126
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.85 E-value=2.5e+02 Score=32.47 Aligned_cols=137 Identities=15% Similarity=0.204 Sum_probs=91.6
Q ss_pred cCCCCHHHHHHHHHHHHHHh-hchhhHHHHHHHHHhhcccc-chhhhhhHHHHHHHHhhcCChHHHHHHHHHhhccccCh
Q 010666 167 LSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADL 244 (504)
Q Consensus 167 LSD~sdeVv~~~L~LLa~Is-~~~~~F~~fm~~LL~lF~~d-r~LLe~Rg~lIIRqLC~~L~aE~Iy~~La~iL~~~~Dl 244 (504)
.+|+++.|...+..-|+.|. .+++. +..++.++..+ .......+.+-+=.+|.-=+..++..+|...+. +.|-
T Consensus 587 ~~d~~d~VRraAViaLGlI~~g~~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~ 661 (963)
T 4ady_A 587 VSDSNDDVRRAAVIALGFVLLRDYTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVD 661 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHTSSSCSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSH
T ss_pred ccCCcHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCH
Confidence 45888899988888888887 33322 34444444332 344445555566777766666788888887764 4566
Q ss_pred HHHHHHHHHHHHHhcCc-----hhHHHHHHHHHhhcCC--cchhHHHHHHHH-------------------HhccChHHH
Q 010666 245 DFACTMVQALNLILLTS-----SELSELRDLLKKSLVN--PAGKDLFVSLYA-------------------SWCHSPMAI 298 (504)
Q Consensus 245 ~F~~~mVq~Ln~iLLTs-----~El~~lR~~L~~~l~~--~~~~~lF~~L~~-------------------sWchn~vs~ 298 (504)
.-...-+..|-.|..-. |.+..+|++|.+...+ +|....|-..+- .=.-|++|+
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~ 741 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSV 741 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHH
Confidence 66667888999998743 4689999998774433 344556665542 223479999
Q ss_pred HHHHHHHhhH
Q 010666 299 ISLCLLAQTY 308 (504)
Q Consensus 299 lsLcLl~q~Y 308 (504)
.+|..++|.+
T Consensus 742 ~Gl~~f~q~w 751 (963)
T 4ady_A 742 VGLVMFSQFW 751 (963)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9999987665
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.10 E-value=30 Score=31.32 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=56.6
Q ss_pred CchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHH--HHHHHHcccccC-CchHHHHHHHHHHHHHHHhh
Q 010666 30 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISD-KEEKIRVVARETNEELRAIK 106 (504)
Q Consensus 30 vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp--~iL~~lLp~Lsd-~~~eIR~~A~~~N~~Ll~li 106 (504)
..-..-+..|..|+...++-.++.||.-+..++.-+|..+...+. ++++.+...+.. .+++||+-+..+-.......
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 344567788999999999999999999999999999986664333 255555444443 55778877777766665554
Q ss_pred c
Q 010666 107 A 107 (504)
Q Consensus 107 ~ 107 (504)
.
T Consensus 128 ~ 128 (163)
T 1x5b_A 128 Q 128 (163)
T ss_dssp T
T ss_pred c
Confidence 4
No 128
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=57.90 E-value=1.5e+02 Score=29.30 Aligned_cols=151 Identities=19% Similarity=0.143 Sum_probs=97.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc-----hhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhch---
Q 010666 119 LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-----LNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKDL--- 189 (504)
Q Consensus 119 v~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~-----~~~lfp~LLksLSD~-sdeVv~~~L~LLa~Is~~~--- 189 (504)
++.+..-+ +=.++.|..+||=++.+.- +|.--.-+ -+.++..+++.++++ .+.-...+++++++.-++.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 34444433 3344568888887777653 44322111 234555666766543 4556777888888876433
Q ss_pred ----hhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCC-------hHHHHHHHHHhhccccChHHHHHHHHHHHHHh
Q 010666 190 ----QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD-------AERVYRELSTILEGEADLDFACTMVQALNLIL 258 (504)
Q Consensus 190 ----~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~-------aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iL 258 (504)
.++..++..+...+..+.+.+..-++-++-++...+. .+.+...+..+++.++|.|=+-++.+.|-+++
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 2355666666666666667777777777777777652 24566666677777889888889999999888
Q ss_pred cCchhHHHHHHHH
Q 010666 259 LTSSELSELRDLL 271 (504)
Q Consensus 259 LTs~El~~lR~~L 271 (504)
-..+|+.++-+.+
T Consensus 263 ~~~~~~~~lak~l 275 (304)
T 3ebb_A 263 SDDSNAVQLAKSL 275 (304)
T ss_dssp TTCHHHHHHHHHT
T ss_pred hCChhHHHHHHHc
Confidence 8888877766654
No 129
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=53.88 E-value=2.9e+02 Score=31.87 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHh
Q 010666 46 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 125 (504)
Q Consensus 46 ~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~ 125 (504)
.++++|..|+.=|- ++.++..++ .|++++.+. .+.++.||..|.-+.+.+- .++ ...++++.|...
T Consensus 590 ~~d~VRraAViaLG-lI~~g~~e~---v~rlv~~L~---~~~d~~VR~gAalALGli~-----aGn--~~~~aid~L~~L 655 (963)
T 4ady_A 590 SNDDVRRAAVIALG-FVLLRDYTT---VPRIVQLLS---KSHNAHVRCGTAFALGIAC-----AGK--GLQSAIDVLDPL 655 (963)
T ss_dssp SCHHHHHHHHHHHH-HHTSSSCSS---HHHHTTTGG---GCSCHHHHHHHHHHHHHHT-----SSS--CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH-hhccCCHHH---HHHHHHHHH---hcCCHHHHHHHHHHHHHhc-----cCC--CcHHHHHHHHHH
Confidence 45667776655443 444444332 334333222 3577899988887765421 122 237888999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhchhhhhhchhHHHHHHHHhcCCCC
Q 010666 126 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 171 (504)
Q Consensus 126 L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~s 171 (504)
..+.+..+|.+|..=|-++-....+..-+-...++..|.+..+|..
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 9999999999999888888877766655566666666777766644
No 130
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=53.18 E-value=1.1e+02 Score=27.15 Aligned_cols=99 Identities=13% Similarity=0.091 Sum_probs=67.8
Q ss_pred HHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 78 GAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 78 ~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
.+.=+.+..++ .-+-+.|..+|.. ...-...+..|..++. +.++.+.+-||.=|..+...++..+...
T Consensus 23 kATs~~l~~~Dw~~~leicD~I~~~----------~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 23 KATDGSLQSEDWALNMEICDIINET----------EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHS----------SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHhCC----------CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 44444444444 3355666666642 2335678889999997 5889999999999999999998877642
Q ss_pred -hhH-HHHH-HHHhcC---CCCHHHHHHHHHHHHHHh
Q 010666 156 -LND-IFDT-LLKALS---DPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 156 -~~~-lfp~-LLksLS---D~sdeVv~~~L~LLa~Is 186 (504)
.+. .+.. |.+.++ ++..+|..++++++..-+
T Consensus 93 va~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 93 VASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 222 3334 455554 456799999999988775
No 131
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.56 E-value=1.4e+02 Score=27.02 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch
Q 010666 78 GAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 156 (504)
Q Consensus 78 ~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~ 156 (504)
.+.=+.+..++ .-+-+.|..+|.. ...-...+..|...+.+.++.+.+-||.=|..+...++..+...+
T Consensus 20 kATs~~l~~~Dw~~ileicD~I~~~----------~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 20 KATNPSNRQEDWEYIIGFCDQINKE----------LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHS----------TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHcC----------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34444444444 3355666666653 123467788999999999999999999999999999988776322
Q ss_pred -h-HHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 010666 157 -N-DIFDTLLKALSD------PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 157 -~-~lfp~LLksLSD------~sdeVv~~~L~LLa~Is 186 (504)
+ .++..|.+.++. ...+|..++++++..-+
T Consensus 90 as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 90 GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 2 244556666652 35899999999988876
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.64 E-value=1.3e+02 Score=26.50 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=68.1
Q ss_pred ccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch-h-H
Q 010666 82 PCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-N-D 158 (504)
Q Consensus 82 p~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~-~-~ 158 (504)
+.+..++ .-+-+.|..+|.. ...-...+..|..++.+.++.+.+-||.=|..+...++..+...+ + .
T Consensus 12 ~~l~~~dw~~~leicD~I~~~----------~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 12 PSMSEQDWSAIQNFCEQVNTD----------PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp TTCSSCCHHHHHHHHHHHHHS----------SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred CCCCCcCHHHHHHHHHHHHcC----------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 3343343 3355666666643 122356788899999999999999999999999999988874432 3 3
Q ss_pred HHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 010666 159 IFDTLLKALSD------PSDEVVLLVLEVHACIA 186 (504)
Q Consensus 159 lfp~LLksLSD------~sdeVv~~~L~LLa~Is 186 (504)
++..|.+.+++ ...+|..+.++++..-+
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 44566666664 36899999999988776
No 133
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=49.92 E-value=2e+02 Score=31.18 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchh-hhhhchhHHHH-HHHHhcCCCCHHHHHHHHHHHHHHhh
Q 010666 118 ILSIATRQLSSEWEATRIEALHWISTLLNRHRT-EVLHFLNDIFD-TLLKALSDPSDEVVLLVLEVHACIAK 187 (504)
Q Consensus 118 iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~-~~l~~~~~lfp-~LLksLSD~sdeVv~~~L~LLa~Is~ 187 (504)
++.+| ++|.+.+...|..|+.=|..|.. .|. .-+-.-.++++ .+-+.|+|++.+|+..+...|..++.
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34444 56889999999999988888876 433 22222334554 45567999999999999999999984
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.37 E-value=73 Score=29.78 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=64.0
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHH--HHHHHHccccc-CCchHHHHHHHHHHHHHHHh
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCIS-DKEEKIRVVARETNEELRAI 105 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp--~iL~~lLp~Ls-d~~~eIR~~A~~~N~~Ll~l 105 (504)
...-.+-+..|..++.+.++-.++.||.-+..++.-+|..+...+. ++++.+...+. ..+++||+-+.++-......
T Consensus 37 ~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 37 DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3455667788999999999999999999999999998865543211 24444444443 34678888888887777766
Q ss_pred hcCCCCCCChHhHHHHHHHh
Q 010666 106 KADPADGFDVGPILSIATRQ 125 (504)
Q Consensus 106 i~~~~~~~d~~~iv~vL~~~ 125 (504)
..+.+.--.+.++.+.|...
T Consensus 117 f~~~~~~~~i~~~y~~Lk~~ 136 (220)
T 1dvp_A 117 FRSSDKYQAIKDTMTILKAK 136 (220)
T ss_dssp TTTCSSCCHHHHHHHHHHHT
T ss_pred hccchHHHHHHHHHHHHhhc
Confidence 65432211134445555444
No 135
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=45.31 E-value=68 Score=29.92 Aligned_cols=74 Identities=8% Similarity=-0.095 Sum_probs=59.0
Q ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhc
Q 010666 76 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 155 (504)
Q Consensus 76 iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~ 155 (504)
+...+..-..|++.-+|+.|.... +..+ ..-|.+.+..++...+.+++..+|.++=-+|..+..++|+.+.+|
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~----~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLK----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCG----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHH----HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 556677788888888888887633 2222 234667888888889999999999999999999999999999987
Q ss_pred h
Q 010666 156 L 156 (504)
Q Consensus 156 ~ 156 (504)
+
T Consensus 198 l 198 (220)
T 2b6c_A 198 M 198 (220)
T ss_dssp H
T ss_pred H
Confidence 7
No 136
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=44.09 E-value=1.4e+02 Score=25.98 Aligned_cols=101 Identities=8% Similarity=0.102 Sum_probs=62.0
Q ss_pred ccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhc
Q 010666 71 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WEATRIEALHWISTLLNRH 148 (504)
Q Consensus 71 pylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~--~e~TRlaaL~WL~~L~~k~ 148 (504)
.|-.+.+...|..|....+.|..++.=+-. .......+++.+.+++... ....|++-|==+..+....
T Consensus 2 ~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~----------h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqns 71 (142)
T 2km4_A 2 AFSSEQFTTKLNTLEDSQESISSASKWLLL----------QYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQA 71 (142)
T ss_dssp CCCHHHHHHHHHTCCSCHHHHHHHHHHHHT----------CGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccccHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHH
Confidence 355677788888888888888876665542 2235688999999999875 6788999885555555433
Q ss_pred h----hhhhhchhHHHHHHHHhcCC-CCHHHHHHHHHH
Q 010666 149 R----TEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEV 181 (504)
Q Consensus 149 P----~~~l~~~~~lfp~LLksLSD-~sdeVv~~~L~L 181 (504)
. .++...+...+|.++..... .++++..+...+
T Consensus 72 k~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rv 109 (142)
T 2km4_A 72 KGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRV 109 (142)
T ss_dssp GGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 33444444455544443321 234444443333
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.52 E-value=2.2e+02 Score=26.71 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=66.9
Q ss_pred HHHHHHcccccCCc-hHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 75 DILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 75 ~iL~~lLp~Lsd~~-~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
.|-.+.=+.+..++ .-|-+++..+|. +...-...+..|...+.+.++.+.+-||.=|..+.+..+..+.
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~----------~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~ 81 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQ----------GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVH 81 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHT----------TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhC----------CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHH
Confidence 33444445554444 345566666652 2233578889999999999999999999999999888887664
Q ss_pred h------chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 010666 154 H------FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 186 (504)
Q Consensus 154 ~------~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is 186 (504)
. |++. +-.+++. ....+|..++++++..-+
T Consensus 82 ~eias~~fl~~-l~~l~~~--~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 82 DEVANKQTMEE-LKDLLKR--QVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHSSHHHHHH-HHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHH-HHHHhcc--CCCHHHHHHHHHHHHHHH
Confidence 2 2322 2223343 356899999999887765
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=40.32 E-value=1.1e+02 Score=27.01 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccC------CchHHHHHHHHHHHHHH
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISD------KEEKIRVVARETNEELR 103 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd------~~~eIR~~A~~~N~~Ll 103 (504)
-..-+..|..|+++.++-.++.|++-+..++.-+|..+...+ -++++.+...+++ .+++||+-+.++-....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999997665433 3566666666653 36788887777766665
Q ss_pred Hhhc
Q 010666 104 AIKA 107 (504)
Q Consensus 104 ~li~ 107 (504)
....
T Consensus 116 ~~f~ 119 (148)
T 1mhq_A 116 VWFP 119 (148)
T ss_dssp HHCT
T ss_pred HHcC
Confidence 5553
No 139
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.66 E-value=49 Score=29.41 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-chhhHHHHH
Q 010666 157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 196 (504)
Q Consensus 157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~-~~~~F~~fm 196 (504)
..+..-|++.|.|.+..|+.|+|++|.-++. +.+.|..-+
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~ 88 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREM 88 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHH
Confidence 5677789999999999999999999999983 445554433
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=38.14 E-value=1.5e+02 Score=27.66 Aligned_cols=183 Identities=12% Similarity=0.076 Sum_probs=92.1
Q ss_pred HHHHhcCCccccccHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHH
Q 010666 59 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEAL 138 (504)
Q Consensus 59 ~efl~i~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL 138 (504)
.++-.+++..-..+...+.....++++=..|++|+.|.+.-... .. ....|..+.+.. ...++..+.|..|+
T Consensus 11 ~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~----~~-~~~~~~~~~~~~---L~~~~~~E~r~~ai 82 (232)
T 3jxy_A 11 EHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIH----TL-PDQKDFQIIIRE---LWDLPEREFQAAAL 82 (232)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHH----CC-CCGGGHHHHHHH---HHTSSBHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhc----cc-cchhhHHHHHHH---HhcCcHHHHHHHHH
Confidence 34555556556666677777778999999999999999875432 11 122333333333 33456777999999
Q ss_pred HHHHHHHhhchhhhhhchhHHHHHHHHhcCCCCHHHHHHH-HHHHHHHhh-chhhHHHHHHHHHhhccccchhhhhhHHH
Q 010666 139 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV-LEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGAL 216 (504)
Q Consensus 139 ~WL~~L~~k~P~~~l~~~~~lfp~LLksLSD~sdeVv~~~-L~LLa~Is~-~~~~F~~fm~~LL~lF~~dr~LLe~Rg~l 216 (504)
.++.....+...+-++.++. .+++ .++=+|+... -.++..+.. ++..+ ...+..... +...-..|..
T Consensus 83 ~~l~~~~k~~~~~~l~~~~~----~l~~--~~nWd~~D~~a~~~~g~~~~~~p~~~---~~~l~~W~~-s~~~w~rR~a- 151 (232)
T 3jxy_A 83 DIMQKYKKHINETHIPFLEE----LIVT--KSWWDSVDSIVPTFLGDIFLKHPELI---SAYIPKWIA-SDNIWLQRAA- 151 (232)
T ss_dssp HHHHHTGGGCCGGGHHHHHH----HHTS--SCCHHHHHHHTTTHHHHHHHHCGGGG---GGTHHHHHH-SSCHHHHHHH-
T ss_pred HHHHHHHHhCCHHHHHHHHH----HHcc--CCChHHHHHhhHHHHHHHHHHCHHHH---HHHHHHHhc-CCchHHHHHH-
Confidence 99975544443333333333 3332 3344444322 122222221 11111 122222223 3334455533
Q ss_pred HHHHHhhc--CChHHHHHHHHHhhccccChHHHHHHHH-HHHHHhcCch
Q 010666 217 IIRRLCVL--LDAERVYRELSTILEGEADLDFACTMVQ-ALNLILLTSS 262 (504)
Q Consensus 217 IIRqLC~~--L~aE~Iy~~La~iL~~~~Dl~F~~~mVq-~Ln~iLLTs~ 262 (504)
|+-+|.-. .+++.++..+...+ .++-.|+.++|- .|+.+.-+.|
T Consensus 152 i~~~l~~~~~~d~~~~~~~i~~~~--~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 152 ILFQLKYKQKMDEELLFWIIGQLH--SSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp HHTTTTCGGGCCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhCH
Confidence 33333332 34455555444433 234457777665 3444444444
No 141
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=37.80 E-value=3.4e+02 Score=28.14 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=49.8
Q ss_pred hHHHHHHHhcCCCCHHHHHHHH-HH----HHHHHhhchhhhhhchhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhh-ch
Q 010666 117 PILSIATRQLSSEWEATRIEAL-HW----ISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK-DL 189 (504)
Q Consensus 117 ~iv~vL~~~L~s~~e~TRlaaL-~W----L~~L~~k~P~~~l~~~~~lfp~LLksLSD~-sdeVv~~~L~LLa~Is~-~~ 189 (504)
.+...+...+.|.+-++-.+|| -| +..+...+++.+++ -+||+|.++.... +..|..++..++.-+.+ |.
T Consensus 293 ~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlP---ii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 293 PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILP---IMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHH---HHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHH---HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 3445667777899988888888 33 44455556555543 4566666654444 78999999988888773 44
Q ss_pred hhHHHH
Q 010666 190 QHFRQL 195 (504)
Q Consensus 190 ~~F~~f 195 (504)
+-|+..
T Consensus 370 ~lF~~~ 375 (403)
T 3fga_B 370 KLFDDC 375 (403)
T ss_dssp CCCCTT
T ss_pred HHHHHH
Confidence 445433
No 142
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.96 E-value=1.7e+02 Score=26.02 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhcCCccccccHH--HHHHH-Hccccc---CCchHHHHHHHHHHHHH
Q 010666 30 VDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGA-ILPCIS---DKEEKIRVVARETNEEL 102 (504)
Q Consensus 30 vD~~~iI~ILv~~l~-s~e~~iRltaL~WI~efl~i~~~~llpylp--~iL~~-lLp~Ls---d~~~eIR~~A~~~N~~L 102 (504)
..-.+-+..|..|+. ..++-.++.||+-+..++.-+|..+..-+. ++++. +...++ ++..+||+-+.++-...
T Consensus 49 ~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 49 EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 345567788999997 588999999999999999999987765333 25554 344443 34567888887777776
Q ss_pred HHhhcC
Q 010666 103 RAIKAD 108 (504)
Q Consensus 103 l~li~~ 108 (504)
......
T Consensus 129 ~~~f~~ 134 (157)
T 1elk_A 129 ADAFRS 134 (157)
T ss_dssp HHHHTT
T ss_pred HHHcCC
Confidence 666543
No 143
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=33.45 E-value=29 Score=38.73 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHccc
Q 010666 29 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 83 (504)
Q Consensus 29 ~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~ 83 (504)
.+|...=++.|-..- .++.+|.+||+||.. .++++++-|+|.++.++=--
T Consensus 106 ~~~~~dALeLL~~~f--~~~~VR~yAV~~L~~---~~de~L~~YLlQLVQALKyE 155 (696)
T 2x6h_A 106 PMDVEDALELLSPTF--THPQVRKYAVSRLAQ---APDEDLLLYLLQLVQALKYE 155 (696)
T ss_dssp CCCHHHHHHHHSTTC--CCHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHGGGS
T ss_pred CCCHHHHHHHhcccC--CCHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhc
Confidence 566666677665433 689999999999987 48999999999999986443
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.30 E-value=1.9e+02 Score=25.54 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHcccccC------CchHHHHHHHHHHHHHH
Q 010666 32 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISD------KEEKIRVVARETNEELR 103 (504)
Q Consensus 32 ~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpy--lp~iL~~lLp~Lsd------~~~eIR~~A~~~N~~Ll 103 (504)
-..-+..|..|+.+.++-.++.|++-+..++.-+|..|..- --++++.+.+.+++ .+++||+-..++-....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999765322 12455555555553 45778887777777666
Q ss_pred HhhcC
Q 010666 104 AIKAD 108 (504)
Q Consensus 104 ~li~~ 108 (504)
....+
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 66543
No 145
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.24 E-value=39 Score=21.29 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHh
Q 010666 262 SELSELRDLLKK 273 (504)
Q Consensus 262 ~El~~lR~~L~~ 273 (504)
+.|..||++||.
T Consensus 15 erlrklrkklrs 26 (27)
T 3twe_A 15 ERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 456777888775
No 146
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=32.73 E-value=1.1e+02 Score=25.91 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=49.2
Q ss_pred cHHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 010666 72 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 148 (504)
Q Consensus 72 ylp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~ 148 (504)
|-.+.+...|..|+.+.+.|..++.=+-.. .-..+.|++++.+++.......|++.|==+..+....
T Consensus 4 f~~~~l~~~L~~L~~s~~sI~~~s~w~l~~----------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 4 FSESALEKKLSELSNSQQSVQTLSLWLIHH----------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp CCHHHHHHHHHHCCSSTTHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 556777888888888888888777666532 1235788899999998777778999996666665544
No 147
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=31.41 E-value=1.9e+02 Score=30.84 Aligned_cols=161 Identities=14% Similarity=0.205 Sum_probs=99.6
Q ss_pred hchhHHHHHHHHhcCCCC--HHHH----HHHHHHHHHHh--hchh--hHHHHHHHHHhhccccchhhhhhHHHHHHHHhh
Q 010666 154 HFLNDIFDTLLKALSDPS--DEVV----LLVLEVHACIA--KDLQ--HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCV 223 (504)
Q Consensus 154 ~~~~~lfp~LLksLSD~s--deVv----~~~L~LLa~Is--~~~~--~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~ 223 (504)
.+....++.+.+-..|.+ .+|- ....++++++| .+++ .|+.+=.+.++.+..+.. ++ .+=.
T Consensus 278 ~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~d~e~~~Fk~ld~~~l~i~~~~~~--------~~-~fLS 348 (500)
T 3vld_A 278 RHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEEDEYSLFKTMDKDSLKIGSEAKL--------IT-EWLE 348 (500)
T ss_dssp HHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSSCSTTHHHHHHHHHTTCTTSSGGG--------HH-HHHH
T ss_pred HHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcccchhHHHHhccccceecCCcchh--------HH-HHHH
Confidence 355566666666665543 4442 35668899999 5667 799887777777664433 33 3445
Q ss_pred cCChHHHHHHHHHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHH
Q 010666 224 LLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCL 303 (504)
Q Consensus 224 ~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcL 303 (504)
.+||+.+|+.-.+++.. .-+++...+.=+|+-..+ .+.|..+=.-+--+. +
T Consensus 349 ~iNP~yL~~~~~d~l~~---------------~~~l~~s~l~Il~NLIs~-------~~~F~~ik~~lts~~-------I 399 (500)
T 3vld_A 349 LINPQYLVKYHKDVVEN---------------YFHVSGYSIGMLRNLSAD-------EECFNAIRNKFSAEI-------V 399 (500)
T ss_dssp HSCHHHHHHHCHHHHHH---------------HCCCSGGGHHHHHHHTTS-------HHHHHTTGGGCCHHH-------H
T ss_pred hcCHHHHHHHHHHHHHh---------------ccccChhHHHHHHHHhcC-------HHHHHHHHhccCHHH-------H
Confidence 68999999886666533 223455555555554433 334555444443333 3
Q ss_pred HHhhHHHHHHHHHHhhccccchHHHHHH--HHHHHHhhchh--------hHHHHHHhcC
Q 010666 304 LAQTYHHASAVIQSLVEEDLNVKFLVQL--DKLIRLLETPI--------FAYLRLQLLE 352 (504)
Q Consensus 304 l~q~Ye~A~~li~~~~~~eitv~~L~qi--D~LVqLlESPi--------F~~LRLqLLe 352 (504)
++=-|.-=+.++..++..+=++++|++- -..=.|+++|. -..+|++-||
T Consensus 400 l~LPy~eqm~LL~~lS~y~ys~~yLln~LP~VmsnLi~~~~~~~I~e~Et~~Lr~~~le 458 (500)
T 3vld_A 400 LRLPYLEQMQVVETLTRYEYTSKFLLNEMPKVMGSLIGDGSAGAIIDLETVHYRNSALR 458 (500)
T ss_dssp HTSCHHHHHHHHHHHTTSHHHHHHHHHHCHHHHHHHHCSSCGGGCCCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcCchhHHHHHhhhhHHHHHHhcCCCcccccChHHHHHHHHHHH
Confidence 4445777889999999999999999993 22334666433 4455655444
No 148
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.95 E-value=1.7e+02 Score=31.00 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=66.5
Q ss_pred HHHHHhhcCChHHHHHHHHHhhccccChHHHHHHHHHHH------HHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHH
Q 010666 217 IIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALN------LILLTSSELSELRDLLKKSLVNPAGKDLFVSLYAS 290 (504)
Q Consensus 217 IIRqLC~~L~aE~Iy~~La~iL~~~~Dl~F~~~mVq~Ln------~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~s 290 (504)
.-.++|..++.+..++.+|+.-...-|++.|.+.-+.+. .+.........+++..+.....++-..-|...++
T Consensus 670 ~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~- 748 (814)
T 3mkq_A 670 LARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI- 748 (814)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred HHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH-
Confidence 334778889999999999999988888888877665532 2211122222222222221111111112222222
Q ss_pred hccChHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 010666 291 WCHSPMAIISLCLLAQTYHHASAVIQSLVEED 322 (504)
Q Consensus 291 Wchn~vs~lsLcLl~q~Ye~A~~li~~~~~~e 322 (504)
+.++-.++-+|.=+..|+.|+.+-+.++.-+
T Consensus 749 -~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 749 -AGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp -HTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred -cCCHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 7899999999999999999999999987544
No 149
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=26.79 E-value=70 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=24.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhcc-ccChHH
Q 010666 216 LIIRRLCVLLDAERVYRELSTILEG-EADLDF 246 (504)
Q Consensus 216 lIIRqLC~~L~aE~Iy~~La~iL~~-~~Dl~F 246 (504)
.+.|+||..|++..-++.||..+.. +...+|
T Consensus 17 ~~r~~L~~~LD~~~~W~~La~~i~~~~~~~ky 48 (113)
T 2a9i_A 17 GILRKLSDFIDPQEGWKKLAVAIKKPSGDDRY 48 (113)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHHCBCTTSSBSS
T ss_pred HHHHHHHHHhCCcccHHHHHHHHcCccccCCC
Confidence 4789999999999999999998755 333444
No 150
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.45 E-value=5.1e+02 Score=25.38 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELR 103 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll 103 (504)
|..|+++++=|-.+++..+.+++.|+ .+|+.-.+..+..+.+--|.+|.-+-++.+
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 56799999999999999888888884 677777777777777776767766655544
No 151
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=24.39 E-value=8.5e+02 Score=27.96 Aligned_cols=182 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhccC----CCCchHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666 5 SSHEIRQQADSALWEFLQEIKNS----PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 80 (504)
Q Consensus 5 pn~eVR~~ae~lL~~FLkeIk~~----~~vD~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l 80 (504)
+++.+|+.|--.++.+++..-.. +.-....+.+.|.+.+...+++-+.. ||+.+=+++-...++.+-.++.+.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~---~LkaLGN~g~p~~l~~l~~~l~~~ 483 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVL---ALKALGNAGQPNSIKKIQRFLPGQ 483 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHTCGGGHHHHHTTSTTS
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHH---HHHHhhccCChhHHHHHHHhhcCc
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhchhhhhhchhH
Q 010666 81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLND 158 (504)
Q Consensus 81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L--~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~~~ 158 (504)
=..=.+....||..|..+...+- ..+-..+-+++.+-+ ..++.+.|++| +..|.+..|..-.
T Consensus 484 ~~~~~~~~~rvr~aAi~ALr~~~--------~~~p~~v~~il~~i~~n~~e~~EvRiaA---~~~Lm~t~P~~~~----- 547 (1056)
T 1lsh_A 484 GKSLDEYSTRVQAEAIMALRNIA--------KRDPRKVQEIVLPIFLNVAIKSELRIRS---CIVFFESKPSVAL----- 547 (1056)
T ss_dssp SSCCCCSCHHHHHHHHHTTTTGG--------GTCHHHHHHHHHHHHHCTTSCHHHHHHH---HHHHHHTCCCHHH-----
T ss_pred cccccccchHHHHHHHHHHHHhh--------hhchHHHHHHHHHHhcCCCCChHHHHHH---HHHHHHHCcCHHH-----
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHh----hchhhHHHHHHHHHhhcccc
Q 010666 159 IFDTLLKALSD-PSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVD 206 (504)
Q Consensus 159 lfp~LLksLSD-~sdeVv~~~L~LLa~Is----~~~~~F~~fm~~LL~lF~~d 206 (504)
+..+...+.. ++.+|..-...-+..++ -....+..-....++++...
T Consensus 548 -l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a~~~l~~k 599 (1056)
T 1lsh_A 548 -VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLGSK 599 (1056)
T ss_dssp -HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHTTSCSG
T ss_pred -HHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhccc
No 152
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=24.38 E-value=5.4e+02 Score=25.70 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHhcCCcccccc----HHHHHHHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCC----------
Q 010666 48 EFTRLTAITWINEFVKLGGDQLVPY----YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF---------- 113 (504)
Q Consensus 48 ~~iRltaL~WI~efl~i~~~~llpy----lp~iL~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~---------- 113 (504)
|+.|..-..+++.+..-+-..++.. +-.++++++...-|++++|.+.+.++..+|++-+.+ ++.+
T Consensus 136 PehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~-~~~~~~~Fy~~fy~ 214 (321)
T 1w9c_A 136 PEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ-EEAAAQSFYQTYFC 214 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 8899999999999999988877765 556788888889999999999999999999998864 1111
Q ss_pred C-hHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 010666 114 D-VGPILSIATRQLSSEWEATRIEALHWISTLLN 146 (504)
Q Consensus 114 d-~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~ 146 (504)
+ +..+..++|.-.....=......|.=|..+.+
T Consensus 215 ~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve 248 (321)
T 1w9c_A 215 DILQHIFSVVTDTSHTAGLTMHASILAYMFNLVE 248 (321)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHH
Confidence 1 34667778877765555455566666655554
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=23.86 E-value=1.9e+02 Score=26.17 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccH--HHHHHHHcccccC------CchHHHHHHHHHHHHH
Q 010666 31 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISD------KEEKIRVVARETNEEL 102 (504)
Q Consensus 31 D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpyl--p~iL~~lLp~Lsd------~~~eIR~~A~~~N~~L 102 (504)
.-..-+..|..++.+.++-.++.||+-+..++.-+|..+..-+ -++++.+...++. .+++||+-+.++-...
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999987555322 2345555555542 3577888777777666
Q ss_pred HHhhc
Q 010666 103 RAIKA 107 (504)
Q Consensus 103 l~li~ 107 (504)
.....
T Consensus 127 ~~~f~ 131 (171)
T 1juq_A 127 TMALP 131 (171)
T ss_dssp HHHCT
T ss_pred HHHcC
Confidence 65553
No 154
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.58 E-value=4.5e+02 Score=24.40 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=88.8
Q ss_pred HHHHHHhccCCCCc--hHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHHcccccCCc---hH
Q 010666 18 WEFLQEIKNSPSVD--YGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE---EK 90 (504)
Q Consensus 18 ~~FLkeIk~~~~vD--~~~iI~ILv~~l~--s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~lLp~Lsd~~---~e 90 (504)
++=|..++..+.+. +|+++.-+.+.+. ..|-+.=...+.-++.+++-+...+-||+-.++..++.|+-... ..
T Consensus 26 ~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~ 105 (196)
T 4atg_A 26 DIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDD 105 (196)
T ss_dssp HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHH
T ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHH
Confidence 44456666555444 6666666555442 22555555678889999999999999999999999999986532 37
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCC--CHHHHHHHHHHHHHH
Q 010666 91 IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WEATRIEALHWISTL 144 (504)
Q Consensus 91 IR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~--~e~TRlaaL~WL~~L 144 (504)
+|+-|.++...+.+--.+....+ -..+.+.+...|.++ +..|..-|+.=|..|
T Consensus 106 LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 106 VRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 99999998888777765533333 478888998888754 566677776554443
No 155
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7 homolog C; tripartite complex, L27 tetramer, cell junction; 2.95A {Homo sapiens} PDB: 1rso_A
Probab=21.23 E-value=1.2e+02 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.0
Q ss_pred HhhHHHHHHHHHHhhccccchHHHHHHHHHHHHhhchhhHH
Q 010666 305 AQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAY 345 (504)
Q Consensus 305 ~q~Ye~A~~li~~~~~~eitv~~L~qiD~LVqLlESPiF~~ 345 (504)
..|.++|.+++..++...-+ -+...|.+||-+|-|-.
T Consensus 134 ~~A~~La~EVle~L~~~~~s----~ea~EL~~LLs~PHfQA 170 (254)
T 3lra_A 134 HGAAALADDLAEELQNKPLN----SEIRELLKLLSKPNVKA 170 (254)
T ss_dssp SCHHHHHHHHHHHHHTSCCC----HHHHHHHHHTTSHHHHH
T ss_pred hhHHHHHHHHHHHHhhcCCC----hHHHHHHHHhcCHHHHH
Confidence 47788888898888764422 36788999999999975
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=21.06 E-value=2.2e+02 Score=29.48 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=77.1
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHcccccCCchHHHHHHHHH--HHHHHHhhcCCCCCCC
Q 010666 38 ILVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARET--NEELRAIKADPADGFD 114 (504)
Q Consensus 38 ILv~~l~s~e~~iRltaL~WI~efl~i-~~~~llpylp~iL~~lLp~Lsd~~~eIR~~A~~~--N~~Ll~li~~~~~~~d 114 (504)
-|+.+=-.+++-.+..-+.=|.+++++ ++.++.+....+...+-.|++.++-.|-+.|..+ |..++.++.+... .=
T Consensus 255 ~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~-~I 333 (403)
T 3fga_B 255 ALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA-KI 333 (403)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH-HH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH-HH
Confidence 333333444445555666667777765 4567788888999999999999998887777776 7888888866221 11
Q ss_pred hHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhhhh
Q 010666 115 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL 153 (504)
Q Consensus 115 ~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~~l 153 (504)
+.-+...|-.-.. +=+..+|-.|.+=+.+|.+..|.-+-
T Consensus 334 lPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 334 LPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp HHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 2333334433332 34788898999999999988876544
Done!