BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010667
         (504 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CCQ|A Chain A, The Pub Domain Functions As A P97 Binding Module In Human
           Peptide N-Glycanase
          Length = 99

 Score = 33.1 bits (74), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 411 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVV 470
           LE++ +L T      N++ +P++ KY+ +R  N      +   + A+E LF +GF E   
Sbjct: 19  LEASKLLLTYAD---NILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE--- 72

Query: 471 LDEIGKAETYLVLKR 485
                  ET+L+  +
Sbjct: 73  ------GETHLIFPK 81


>pdb|2HPJ|A Chain A, Crystal Structure Of The Pub Domain Of Mouse Pngase
          Length = 99

 Score = 32.3 bits (72), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 411 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 467
           LE++ +L T      N++ +P + KY+ +R  N      +   + A+E LF +GF E
Sbjct: 18  LEASKLLLTYAD---NILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 71


>pdb|2D5U|A Chain A, Solution Structure Of The N-Terminal Portion Of The Pub
           Domain Of Mouse Peptide:n-Glycanase
          Length = 124

 Score = 32.0 bits (71), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 411 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 467
           LE++ +L T      N++ +P + KY+ +R  N      +   + A+E LF +GF E
Sbjct: 34  LEASKLLLTYAD---NILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 87


>pdb|2HPL|A Chain A, Crystal Structure Of The Mouse P97PNGASE COMPLEX
          Length = 100

 Score = 32.0 bits (71), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 411 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 467
           LE++ +L T      N++ +P + KY+ +R  N      +   + A+E LF +GF E
Sbjct: 18  LEASKLLLTYAD---NILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 71


>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
           Protein With Beta-Lactamase And Rhodanese Domains
 pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
           Protein With Beta-Lactamase And Rhodanese Domains
          Length = 474

 Score = 28.9 bits (63), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 239 GEPLEPENYSDPEMVQQVSPKKLAATNPYEEPD-PDDSETAWKSGVVV 285
           G+P  P  ++  ++V +V P+ LA     E  D P +   AW+ G VV
Sbjct: 242 GQPEAPIYFARXKLVNKVGPRLLAELGAPERVDLPPERVRAWREGGVV 289


>pdb|4ITY|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase
 pdb|4IU0|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
           Complex With Inhibitor Abh
 pdb|4IU1|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
           Complex With Inhibitor Nor-noha
 pdb|4IU4|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
           Complex With Inhibitor Bec
 pdb|4IU5|A Chain A, Crystal Structure Of Leishmania Mexicana Arginase In
           Complex With Catalytic Product L-ornithine
          Length = 330

 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 62  GFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQ--EAVA 102
           G R  +  +K +LH+L    +S H  + YG+DK ++   EAV+
Sbjct: 190 GLRAVDDEEKKILHDLNIAAFSMHHVDRYGIDKVVSMAIEAVS 232


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,981,497
Number of Sequences: 62578
Number of extensions: 681759
Number of successful extensions: 1181
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 17
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)