BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010667
(504 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1442.07c PE=4 SV=1
Length = 282
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 1 MHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDL 60
+ L D GI IM+ HRW V +++E+ P + K LG N N G I LRLRTD
Sbjct: 129 LERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSK-TLGLNHNQGAHIELRLRTDRY 187
Query: 61 KGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTS 120
GFR Y+++K TL+HEL H V+ EHD++F+ L +QL +EA A D G
Sbjct: 188 DGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGS--------- 238
Query: 121 HHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAYRRLANAS 165
+V D S++ + + DQ R +AAA RR + S
Sbjct: 239 ------YVSDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGS 277
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
Length = 269
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 13 IMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR--TDDLKGFRKYESIK 70
+M ++ ++V + E P + +LG N NHG +I LRLR TD+ + F E I
Sbjct: 58 LMKENHFKVTNLVEFYP------RDQRLLGMNVNHGSKIMLRLRCSTDEFQ-FLPMECIM 110
Query: 71 KTLLHELAHMVYSEHDANFYG-LDKQLNQEAV 101
T+LHEL H ++ HD FY LD+ + ++ V
Sbjct: 111 GTMLHELTHNLFGPHDKKFYNKLDELIGRQWV 142
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Danio rerio GN=ngly1 PE=2 SV=1
Length = 644
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 426 NVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKR 485
N++ +P+E KY+ +R NP + K A+E LF +GF E AET+LV R
Sbjct: 31 NILRNPNEEKYRSIRIGNPTFSTKLLPVKGAVECLFEMGFEE---------AETHLVFPR 81
Query: 486 N 486
+
Sbjct: 82 S 82
>sp|Q5ZJM3|NGLY1_CHICK Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
OS=Gallus gallus GN=NGLY1 PE=2 SV=1
Length = 651
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 426 NVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 467
N++ +P E KY+ +R NP + + A+E LF +GF E
Sbjct: 40 NILRNPYEEKYRSIRNGNPAFSTRLLPVRGAVECLFEMGFQE 81
>sp|Q99PL6|UBXN6_MOUSE UBX domain-containing protein 6 OS=Mus musculus GN=Ubxn6 PE=1 SV=1
Length = 442
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 419 TLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDV--VLDEIGK 476
T+ K + N+ HP+E KY++++ N + Q + + + E +GF + V D+ G+
Sbjct: 177 TIAKYLDNIHLHPEEEKYQKIKLQNKVFQERINCLEGSHEFFEAIGFKKVTLPVPDQEGQ 236
Query: 477 AETYLV 482
E Y++
Sbjct: 237 EEFYVL 242
>sp|Q2KIJ6|UBXN6_BOVIN UBX domain-containing protein 6 OS=Bos taurus GN=UBXN6 PE=2 SV=1
Length = 441
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 419 TLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDV--VLDEIGK 476
T+ K + N+ HP+E KY++++ N + Q + + E +GF + + + D+ G
Sbjct: 177 TIAKYLDNIHLHPEEEKYRKIKVQNKVFQERIHCLEGTHEFFEAIGFQKVLLPIPDQEGP 236
Query: 477 AETYLV 482
E Y++
Sbjct: 237 EEFYVL 242
>sp|E1U8D0|SOGA1_MOUSE Protein SOGA1 OS=Mus musculus GN=Soga1 PE=1 SV=3
Length = 1418
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 27/116 (23%)
Query: 169 LGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENK 228
LG+SE +P+P G++ E V G P P G E+
Sbjct: 1270 LGMSEARTKPEPPKYGIVQ--EFFRNVC-----------------GRAPSPTTAAGEESC 1310
Query: 229 LEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVV 284
+P EPL P +Y PE V ++ KK A EE P K G++
Sbjct: 1311 KKP--------EPLSPASYHQPEGVSRILNKKAAKAGGSEEVRPTMLSQVGKDGIL 1358
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 42 GFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAV 101
G N N GE I L LR D + +E + LHEL H+ HD F+ L +
Sbjct: 85 GRNWNKGECIELVLR-DASNRWLPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALI 143
Query: 102 AL 103
AL
Sbjct: 144 AL 145
>sp|Q9BZV1|UBXN6_HUMAN UBX domain-containing protein 6 OS=Homo sapiens GN=UBXN6 PE=1 SV=1
Length = 441
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 419 TLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 467
T+ K + N+ HP+E KY++++ N + Q + + E +GF +
Sbjct: 177 TIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQK 225
>sp|O94964|SOGA1_HUMAN Protein SOGA1 OS=Homo sapiens GN=SOGA1 PE=1 SV=2
Length = 1423
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Query: 169 LGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENK 228
LG+SE +P+P G++ E V G P P G E
Sbjct: 1273 LGMSETRAKPEPPKYGIVQ--EFFRNVC-----------------GRAPSPTSSAGEEGT 1313
Query: 229 LEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEE 269
+P EPL P +Y PE V ++ KK A EE
Sbjct: 1314 KKP--------EPLSPASYHQPEGVARILNKKAAKLGSSEE 1346
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3
Length = 4870
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 226 ENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGV 283
E ++ D D + D +P+ N+S PE ++ + K A + +++ D S++ WK G+
Sbjct: 2587 EKQISVDADGNFDPKPINTMNFSLPEKLEYIVTK--YAEHSHDKWACDKSQSGWKYGI 2642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,938,333
Number of Sequences: 539616
Number of extensions: 9273791
Number of successful extensions: 24139
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 22816
Number of HSP's gapped (non-prelim): 762
length of query: 504
length of database: 191,569,459
effective HSP length: 122
effective length of query: 382
effective length of database: 125,736,307
effective search space: 48031269274
effective search space used: 48031269274
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)