Query 010669
Match_columns 504
No_of_seqs 892 out of 4154
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0289 mRNA splicing factor [ 100.0 6E-109 1E-113 751.6 42.8 486 1-502 1-490 (506)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.9E-49 1.1E-53 358.8 30.1 303 183-501 132-443 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1E-44 2.2E-49 326.4 26.5 268 219-502 111-465 (480)
4 KOG0286 G-protein beta subunit 100.0 3.4E-42 7.3E-47 300.3 33.6 275 215-501 47-328 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 5.8E-41 1.3E-45 306.1 19.0 246 213-468 207-458 (459)
6 KOG0271 Notchless-like WD40 re 100.0 3.9E-40 8.4E-45 296.9 22.3 244 219-468 153-479 (480)
7 KOG0279 G protein beta subunit 100.0 6E-39 1.3E-43 278.4 25.4 242 218-469 58-312 (315)
8 KOG0279 G protein beta subunit 100.0 3E-38 6.5E-43 274.1 29.2 273 217-503 9-298 (315)
9 KOG0263 Transcription initiati 100.0 9.3E-39 2E-43 313.3 26.5 240 223-472 378-651 (707)
10 KOG0286 G-protein beta subunit 100.0 1.4E-36 3E-41 265.3 29.4 235 223-468 97-343 (343)
11 KOG0295 WD40 repeat-containing 100.0 2.3E-37 5E-42 277.6 23.2 267 219-500 104-388 (406)
12 KOG0265 U5 snRNP-specific prot 100.0 2.9E-36 6.3E-41 264.2 25.9 269 219-502 43-322 (338)
13 KOG0315 G-protein beta subunit 100.0 1.5E-35 3.3E-40 253.1 28.0 257 223-496 40-308 (311)
14 KOG0284 Polyadenylation factor 100.0 3.4E-37 7.3E-42 280.2 17.0 265 222-503 95-365 (464)
15 PF08606 Prp19: Prp19/Pso4-lik 100.0 2.6E-38 5.7E-43 214.7 7.2 70 64-133 1-70 (70)
16 KOG0263 Transcription initiati 100.0 5.3E-36 1.1E-40 294.0 23.5 206 218-431 446-652 (707)
17 KOG0266 WD40 repeat-containing 100.0 1.1E-34 2.3E-39 292.0 31.6 272 218-501 154-435 (456)
18 KOG0273 Beta-transducin family 100.0 8E-35 1.7E-39 269.3 27.7 260 223-501 235-506 (524)
19 KOG0285 Pleiotropic regulator 100.0 1E-34 2.2E-39 259.9 24.1 272 217-500 145-421 (460)
20 KOG0316 Conserved WD40 repeat- 100.0 4.1E-34 8.9E-39 242.4 24.6 264 218-499 12-281 (307)
21 KOG0315 G-protein beta subunit 100.0 1.1E-33 2.4E-38 241.8 27.2 252 236-502 11-272 (311)
22 KOG0318 WD40 repeat stress pro 100.0 2.6E-33 5.7E-38 262.5 32.0 280 218-504 185-589 (603)
23 KOG0284 Polyadenylation factor 100.0 1.1E-35 2.3E-40 270.5 15.3 242 218-469 133-379 (464)
24 cd00200 WD40 WD40 domain, foun 100.0 1.1E-32 2.4E-37 261.3 35.8 267 220-502 6-275 (289)
25 KOG0275 Conserved WD40 repeat- 100.0 5.6E-34 1.2E-38 252.0 23.0 298 185-497 165-488 (508)
26 KOG0645 WD40 repeat protein [G 100.0 8.7E-33 1.9E-37 239.2 29.6 274 217-503 8-297 (312)
27 KOG0295 WD40 repeat-containing 100.0 1.9E-33 4.2E-38 252.5 21.5 242 218-469 145-405 (406)
28 KOG0273 Beta-transducin family 100.0 2.2E-32 4.8E-37 253.2 27.7 240 218-469 271-522 (524)
29 KOG0276 Vesicle coat complex C 100.0 2.1E-32 4.6E-37 261.0 26.2 262 222-498 12-279 (794)
30 KOG0282 mRNA splicing factor [ 100.0 1.9E-33 4.1E-38 261.2 16.1 273 212-499 203-485 (503)
31 KOG0285 Pleiotropic regulator 100.0 5.7E-33 1.2E-37 248.7 18.4 232 256-503 142-375 (460)
32 KOG0266 WD40 repeat-containing 100.0 9.6E-32 2.1E-36 270.6 29.1 243 220-469 200-453 (456)
33 KOG0291 WD40-repeat-containing 100.0 4.5E-31 9.7E-36 257.1 32.2 282 209-502 131-492 (893)
34 KOG0296 Angio-associated migra 100.0 1.9E-31 4E-36 239.9 27.3 267 218-502 59-382 (399)
35 KOG0291 WD40-repeat-containing 100.0 3.5E-31 7.5E-36 257.9 31.2 263 223-501 265-533 (893)
36 KOG0293 WD40 repeat-containing 100.0 3.8E-31 8.3E-36 241.1 29.2 270 216-500 217-494 (519)
37 PLN00181 protein SPA1-RELATED; 100.0 5.4E-30 1.2E-34 276.7 43.3 269 221-502 481-777 (793)
38 KOG0288 WD40 repeat protein Ti 100.0 9.7E-32 2.1E-36 245.2 24.5 268 218-501 170-444 (459)
39 KOG0310 Conserved WD40 repeat- 100.0 1.1E-31 2.3E-36 250.1 24.8 276 208-502 12-293 (487)
40 KOG0300 WD40 repeat-containing 100.0 1.6E-31 3.4E-36 236.0 24.3 268 217-500 142-456 (481)
41 KOG0283 WD40 repeat-containing 100.0 9.1E-32 2E-36 266.5 25.1 243 218-471 262-577 (712)
42 KOG0292 Vesicle coat complex C 100.0 1.2E-31 2.5E-36 264.9 24.2 265 222-500 8-304 (1202)
43 KOG0643 Translation initiation 100.0 2.7E-31 5.9E-36 229.4 23.5 271 219-503 6-302 (327)
44 KOG0645 WD40 repeat protein [G 100.0 1.3E-30 2.8E-35 225.8 27.4 240 218-469 56-310 (312)
45 KOG0281 Beta-TrCP (transducin 100.0 8.1E-33 1.8E-37 246.8 12.7 255 222-497 196-458 (499)
46 PTZ00421 coronin; Provisional 100.0 9.4E-30 2E-34 255.2 35.3 266 224-499 21-314 (493)
47 KOG0319 WD40-repeat-containing 100.0 3E-31 6.5E-36 258.1 23.4 245 217-468 359-617 (775)
48 KOG0319 WD40-repeat-containing 100.0 5E-31 1.1E-35 256.5 24.3 272 221-501 321-602 (775)
49 KOG0318 WD40 repeat stress pro 100.0 1E-29 2.2E-34 238.5 32.2 277 218-502 142-544 (603)
50 KOG0292 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 257.8 26.2 248 218-470 46-321 (1202)
51 KOG0281 Beta-TrCP (transducin 100.0 5.8E-32 1.3E-36 241.3 14.6 237 218-471 232-478 (499)
52 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-29 7.9E-34 221.9 31.5 262 223-499 14-286 (311)
53 PTZ00420 coronin; Provisional 100.0 3.8E-29 8.2E-34 251.8 35.6 249 241-500 50-318 (568)
54 cd00200 WD40 WD40 domain, foun 100.0 1.8E-29 4E-34 239.1 31.6 240 219-468 47-289 (289)
55 KOG1407 WD40 repeat protein [F 100.0 5.1E-30 1.1E-34 220.9 24.5 265 219-502 16-286 (313)
56 KOG0276 Vesicle coat complex C 100.0 2E-30 4.2E-35 247.7 23.4 238 223-469 55-297 (794)
57 KOG0640 mRNA cleavage stimulat 100.0 2.3E-30 5E-35 228.0 20.8 275 219-501 108-409 (430)
58 KOG0278 Serine/threonine kinas 100.0 7.3E-31 1.6E-35 224.6 15.8 266 220-503 11-282 (334)
59 KOG0306 WD40-repeat-containing 100.0 1.6E-29 3.4E-34 246.3 26.2 269 219-501 369-647 (888)
60 KOG0299 U3 snoRNP-associated p 100.0 6.1E-29 1.3E-33 230.0 27.4 272 217-501 136-438 (479)
61 KOG0277 Peroxisomal targeting 100.0 6E-30 1.3E-34 219.6 19.0 236 223-468 60-307 (311)
62 KOG0296 Angio-associated migra 100.0 5.1E-29 1.1E-33 224.2 25.4 245 218-469 101-397 (399)
63 KOG0265 U5 snRNP-specific prot 100.0 3.8E-29 8.2E-34 219.7 23.4 242 215-467 82-333 (338)
64 PLN00181 protein SPA1-RELATED; 100.0 2.1E-28 4.6E-33 264.4 34.6 237 223-469 532-792 (793)
65 PTZ00421 coronin; Provisional 100.0 3.9E-28 8.4E-33 243.6 32.8 245 217-470 69-331 (493)
66 KOG0277 Peroxisomal targeting 100.0 2.2E-29 4.7E-34 216.2 19.5 263 227-503 12-295 (311)
67 KOG0316 Conserved WD40 repeat- 100.0 6.9E-29 1.5E-33 210.8 21.1 251 206-468 40-297 (307)
68 KOG0313 Microtubule binding pr 100.0 1.5E-28 3.3E-33 222.1 24.3 274 221-504 103-405 (423)
69 KOG0310 Conserved WD40 repeat- 100.0 7.6E-29 1.6E-33 231.1 22.8 228 223-463 68-300 (487)
70 KOG0294 WD40 repeat-containing 100.0 4.3E-28 9.4E-33 214.4 25.7 261 219-498 39-307 (362)
71 KOG0772 Uncharacterized conser 100.0 8.6E-29 1.9E-33 231.7 22.1 274 219-498 163-467 (641)
72 KOG0305 Anaphase promoting com 100.0 2.3E-28 5.1E-33 236.5 24.8 240 218-469 212-460 (484)
73 KOG0313 Microtubule binding pr 100.0 2.6E-28 5.6E-33 220.7 23.1 242 218-469 139-417 (423)
74 KOG0306 WD40-repeat-containing 100.0 1.6E-28 3.4E-33 239.3 23.0 257 205-469 394-663 (888)
75 KOG0282 mRNA splicing factor [ 100.0 3.5E-29 7.7E-34 232.9 17.1 244 215-468 250-503 (503)
76 KOG0278 Serine/threonine kinas 100.0 3.8E-29 8.3E-34 214.1 15.0 244 218-473 54-300 (334)
77 KOG0274 Cdc4 and related F-box 100.0 1.3E-27 2.8E-32 240.1 27.8 253 221-497 206-463 (537)
78 KOG0288 WD40 repeat protein Ti 100.0 1.4E-27 3E-32 218.2 24.3 237 219-467 215-458 (459)
79 KOG0264 Nucleosome remodeling 100.0 7.7E-28 1.7E-32 222.9 21.5 246 219-469 120-403 (422)
80 KOG0274 Cdc4 and related F-box 100.0 3E-27 6.6E-32 237.4 26.5 242 219-482 245-490 (537)
81 KOG0308 Conserved WD40 repeat- 100.0 4.9E-28 1.1E-32 232.5 19.2 238 228-468 29-281 (735)
82 KOG0305 Anaphase promoting com 100.0 4.3E-27 9.3E-32 227.8 25.5 256 227-502 181-445 (484)
83 PTZ00420 coronin; Provisional 100.0 2.7E-26 5.8E-31 231.3 31.9 228 218-455 69-319 (568)
84 KOG1332 Vesicle coat complex C 100.0 1.2E-27 2.5E-32 204.5 18.3 257 218-480 6-295 (299)
85 KOG0640 mRNA cleavage stimulat 100.0 7.6E-28 1.7E-32 212.1 17.5 220 259-485 106-346 (430)
86 KOG0293 WD40 repeat-containing 100.0 1.4E-27 3E-32 217.9 19.2 238 220-469 266-512 (519)
87 KOG0973 Histone transcription 100.0 7.7E-27 1.7E-31 237.3 26.1 249 218-470 64-355 (942)
88 KOG0283 WD40 repeat-containing 100.0 2E-27 4.3E-32 235.8 21.3 232 258-501 259-559 (712)
89 KOG0641 WD40 repeat protein [G 100.0 9.2E-26 2E-30 190.6 28.2 248 218-469 84-348 (350)
90 KOG0275 Conserved WD40 repeat- 100.0 5.1E-28 1.1E-32 214.3 15.0 238 222-468 262-507 (508)
91 KOG0973 Histone transcription 100.0 1E-26 2.2E-31 236.5 26.1 270 221-502 11-339 (942)
92 KOG0647 mRNA export protein (c 100.0 2.2E-26 4.8E-31 202.5 24.7 267 218-502 22-307 (347)
93 KOG0268 Sof1-like rRNA process 100.0 5.6E-28 1.2E-32 217.3 14.3 242 219-469 62-344 (433)
94 KOG0289 mRNA splicing factor [ 100.0 2.9E-26 6.2E-31 210.7 24.6 244 216-469 254-505 (506)
95 KOG1036 Mitotic spindle checkp 100.0 7.3E-26 1.6E-30 200.0 25.4 265 218-502 8-288 (323)
96 KOG0641 WD40 repeat protein [G 99.9 5.8E-25 1.3E-29 185.8 28.7 266 223-498 32-329 (350)
97 KOG0643 Translation initiation 99.9 1E-25 2.2E-30 195.1 23.8 222 260-499 5-242 (327)
98 KOG0299 U3 snoRNP-associated p 99.9 9.4E-26 2E-30 209.0 24.9 237 220-469 199-456 (479)
99 KOG0646 WD40 repeat protein [G 99.9 5.3E-26 1.1E-30 211.1 21.1 225 223-455 81-332 (476)
100 KOG0269 WD40 repeat-containing 99.9 2.3E-26 5E-31 225.2 18.2 262 223-498 39-319 (839)
101 KOG0267 Microtubule severing p 99.9 1.5E-27 3.4E-32 231.6 9.9 236 220-465 25-262 (825)
102 KOG1407 WD40 repeat protein [F 99.9 6.1E-25 1.3E-29 189.7 23.9 232 219-463 60-293 (313)
103 KOG2445 Nuclear pore complex c 99.9 1.7E-24 3.7E-29 191.1 26.6 277 216-496 6-340 (361)
104 KOG0772 Uncharacterized conser 99.9 2E-25 4.3E-30 209.3 21.7 255 223-483 214-500 (641)
105 KOG2096 WD40 repeat protein [G 99.9 8E-25 1.7E-29 193.9 24.0 273 218-502 81-387 (420)
106 KOG1274 WD40 repeat protein [G 99.9 1.2E-24 2.6E-29 217.1 28.0 262 219-500 9-282 (933)
107 KOG1273 WD40 repeat protein [G 99.9 6E-25 1.3E-29 194.4 22.6 251 226-485 26-291 (405)
108 KOG1446 Histone H3 (Lys4) meth 99.9 2.2E-24 4.8E-29 191.6 25.8 240 222-469 55-302 (311)
109 KOG0639 Transducin-like enhanc 99.9 2.2E-25 4.7E-30 208.2 18.9 264 221-502 417-688 (705)
110 KOG0267 Microtubule severing p 99.9 2.1E-26 4.6E-31 223.8 10.4 246 236-503 5-253 (825)
111 KOG0302 Ribosome Assembly prot 99.9 2.6E-24 5.7E-29 194.7 20.5 245 221-469 149-437 (440)
112 KOG1408 WD40 repeat protein [F 99.9 5.5E-24 1.2E-28 206.5 23.9 267 224-501 325-696 (1080)
113 KOG2055 WD40 repeat protein [G 99.9 6.1E-24 1.3E-28 197.0 22.7 266 222-500 212-494 (514)
114 KOG0294 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 185.8 24.2 241 238-499 4-260 (362)
115 KOG2048 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 197.9 30.8 270 218-499 20-302 (691)
116 KOG0269 WD40 repeat-containing 99.9 4.6E-25 1E-29 216.2 15.4 228 226-463 90-331 (839)
117 KOG0301 Phospholipase A2-activ 99.9 1.2E-23 2.7E-28 203.9 23.6 259 218-503 9-274 (745)
118 KOG0301 Phospholipase A2-activ 99.9 1E-23 2.2E-28 204.5 22.8 233 219-471 53-289 (745)
119 KOG4283 Transcription-coupled 99.9 3E-23 6.6E-28 182.1 23.6 269 218-501 38-348 (397)
120 KOG1408 WD40 repeat protein [F 99.9 5.7E-24 1.2E-28 206.3 19.8 245 222-470 458-713 (1080)
121 KOG0639 Transducin-like enhanc 99.9 2.3E-24 4.9E-29 201.5 16.3 234 223-469 465-703 (705)
122 KOG1036 Mitotic spindle checkp 99.9 7.9E-23 1.7E-27 180.9 23.8 231 219-462 50-294 (323)
123 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-21 2.3E-26 188.5 33.8 253 225-498 32-300 (300)
124 KOG0264 Nucleosome remodeling 99.9 1E-23 2.2E-28 195.6 18.0 234 263-500 122-385 (422)
125 KOG0308 Conserved WD40 repeat- 99.9 9.4E-24 2E-28 203.3 17.8 243 220-469 70-326 (735)
126 KOG1332 Vesicle coat complex C 99.9 1.2E-23 2.6E-28 180.0 15.7 234 262-503 8-271 (299)
127 KOG2106 Uncharacterized conser 99.9 1.1E-21 2.3E-26 184.0 29.9 267 220-502 197-505 (626)
128 KOG0270 WD40 repeat-containing 99.9 4.5E-23 9.7E-28 190.6 19.5 234 227-469 177-448 (463)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-21 6.2E-26 185.5 33.0 249 235-502 1-262 (300)
130 KOG0300 WD40 repeat-containing 99.9 7.2E-23 1.6E-27 181.3 19.7 245 218-471 185-477 (481)
131 KOG0647 mRNA export protein (c 99.9 2.4E-22 5.1E-27 177.2 22.7 233 219-463 68-315 (347)
132 KOG1539 WD repeat protein [Gen 99.9 6.7E-22 1.4E-26 195.6 27.7 274 219-502 198-631 (910)
133 KOG2106 Uncharacterized conser 99.9 1.7E-21 3.8E-26 182.5 28.4 234 223-468 246-519 (626)
134 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-22 2.8E-27 189.5 20.5 263 221-500 32-305 (673)
135 KOG0646 WD40 repeat protein [G 99.9 1.7E-22 3.8E-27 187.8 21.1 247 236-497 51-328 (476)
136 KOG0268 Sof1-like rRNA process 99.9 1.8E-23 4E-28 188.3 12.1 222 258-501 59-285 (433)
137 KOG1539 WD repeat protein [Gen 99.9 1.1E-21 2.3E-26 194.1 23.9 233 224-468 396-646 (910)
138 KOG4283 Transcription-coupled 99.9 4E-22 8.6E-27 175.1 18.1 207 263-475 41-281 (397)
139 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 195.1 24.5 228 222-460 55-288 (933)
140 KOG2055 WD40 repeat protein [G 99.9 7.7E-22 1.7E-26 183.2 20.5 232 265-503 213-450 (514)
141 KOG1063 RNA polymerase II elon 99.9 3.9E-21 8.4E-26 186.7 25.7 279 217-499 261-675 (764)
142 KOG1034 Transcriptional repres 99.9 3E-22 6.6E-27 178.4 16.1 243 222-469 88-380 (385)
143 KOG4328 WD40 protein [Function 99.9 2.9E-21 6.3E-26 179.2 22.6 257 219-484 182-460 (498)
144 KOG0321 WD40 repeat-containing 99.9 2.4E-21 5.3E-26 186.4 20.5 265 227-499 53-371 (720)
145 KOG2919 Guanine nucleotide-bin 99.9 8.8E-21 1.9E-25 168.7 22.3 268 226-500 52-352 (406)
146 KOG0321 WD40 repeat-containing 99.9 4E-21 8.6E-26 185.0 21.5 250 219-470 96-391 (720)
147 KOG0650 WD40 repeat nucleolar 99.9 5.2E-21 1.1E-25 182.8 21.7 291 198-498 376-715 (733)
148 KOG0303 Actin-binding protein 99.9 6.7E-21 1.4E-25 173.7 20.5 231 259-498 75-319 (472)
149 KOG0302 Ribosome Assembly prot 99.9 7.8E-21 1.7E-25 172.3 19.5 207 262-472 148-380 (440)
150 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-21 8.1E-26 179.9 17.3 219 226-454 82-305 (673)
151 KOG1538 Uncharacterized conser 99.9 1.3E-20 2.8E-25 182.0 19.8 254 225-503 14-278 (1081)
152 KOG2445 Nuclear pore complex c 99.9 2.3E-19 5E-24 158.8 25.5 241 262-504 10-304 (361)
153 KOG1034 Transcriptional repres 99.9 2.8E-20 6E-25 166.0 19.0 276 217-502 32-367 (385)
154 KOG0307 Vesicle coat complex C 99.9 3E-21 6.5E-26 197.7 14.3 244 223-472 64-329 (1049)
155 KOG0307 Vesicle coat complex C 99.9 3E-21 6.5E-26 197.7 13.6 261 228-500 11-308 (1049)
156 KOG2048 WD40 repeat protein [G 99.9 2.8E-19 6.1E-24 173.6 26.0 241 218-463 64-310 (691)
157 KOG1009 Chromatin assembly com 99.9 1.5E-19 3.3E-24 165.6 21.8 159 223-386 13-194 (434)
158 KOG0270 WD40 repeat-containing 99.8 2.5E-20 5.4E-25 172.5 16.4 208 219-434 239-455 (463)
159 KOG0642 Cell-cycle nuclear pro 99.8 2.7E-20 5.8E-25 177.2 16.4 257 219-485 290-572 (577)
160 KOG4328 WD40 protein [Function 99.8 5.4E-20 1.2E-24 170.9 16.8 216 251-469 172-398 (498)
161 KOG1273 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 158.9 20.3 257 215-479 57-330 (405)
162 KOG2096 WD40 repeat protein [G 99.8 6.6E-19 1.4E-23 156.6 22.2 239 225-468 134-400 (420)
163 KOG2919 Guanine nucleotide-bin 99.8 2.5E-19 5.5E-24 159.5 19.6 238 223-469 104-366 (406)
164 KOG1063 RNA polymerase II elon 99.8 3.3E-19 7.2E-24 173.4 21.2 278 217-499 355-734 (764)
165 COG2319 FOG: WD40 repeat [Gene 99.8 3.8E-17 8.2E-22 163.6 34.8 262 219-496 61-336 (466)
166 KOG1188 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 158.5 18.8 255 236-496 41-324 (376)
167 KOG0649 WD40 repeat protein [G 99.8 7.7E-18 1.7E-22 144.5 24.7 229 226-469 13-273 (325)
168 KOG1272 WD40-repeat-containing 99.8 4E-20 8.7E-25 172.0 10.8 258 225-498 131-389 (545)
169 KOG0303 Actin-binding protein 99.8 1.9E-18 4.1E-23 157.8 20.5 230 216-454 74-321 (472)
170 KOG1523 Actin-related protein 99.8 4.2E-18 9.1E-23 151.8 22.1 235 223-460 10-267 (361)
171 PRK11028 6-phosphogluconolacto 99.8 5.3E-17 1.2E-21 158.1 32.3 265 224-496 35-327 (330)
172 KOG1007 WD repeat protein TSSC 99.8 2.4E-18 5.2E-23 151.1 19.0 250 243-498 38-340 (370)
173 KOG0290 Conserved WD40 repeat- 99.8 5.1E-18 1.1E-22 149.2 20.1 236 221-463 94-357 (364)
174 KOG4227 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 154.4 20.9 273 219-500 52-369 (609)
175 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.7E-24 179.4 10.6 242 219-469 186-465 (1113)
176 KOG2110 Uncharacterized conser 99.8 5.5E-17 1.2E-21 147.4 26.6 237 223-471 5-249 (391)
177 KOG1587 Cytoplasmic dynein int 99.8 1.7E-17 3.6E-22 166.0 23.2 247 221-469 240-515 (555)
178 PRK01742 tolB translocation pr 99.8 2.8E-17 6.1E-22 165.2 24.1 234 244-499 183-426 (429)
179 KOG1517 Guanine nucleotide bin 99.8 5.8E-17 1.2E-21 164.6 25.4 266 225-499 1066-1362(1387)
180 KOG0290 Conserved WD40 repeat- 99.8 3.5E-17 7.6E-22 144.0 20.7 263 225-498 46-345 (364)
181 KOG1007 WD repeat protein TSSC 99.8 2E-17 4.3E-22 145.3 19.2 239 219-467 59-356 (370)
182 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-15 2.4E-20 152.9 34.5 259 224-498 110-380 (466)
183 KOG1538 Uncharacterized conser 99.8 1.4E-17 2.9E-22 161.3 18.9 238 217-469 47-292 (1081)
184 PRK11028 6-phosphogluconolacto 99.8 4.5E-16 9.7E-21 151.6 29.8 256 238-502 5-287 (330)
185 KOG0771 Prolactin regulatory e 99.8 7.4E-18 1.6E-22 155.7 15.4 198 227-428 148-354 (398)
186 KOG1445 Tumor-specific antigen 99.8 1.9E-17 4.1E-22 159.5 18.5 233 232-471 588-845 (1012)
187 KOG1963 WD40 repeat protein [G 99.8 2.3E-16 5E-21 158.1 26.3 281 217-503 199-524 (792)
188 KOG0650 WD40 repeat nucleolar 99.8 2.4E-17 5.1E-22 158.0 17.6 230 257-498 392-660 (733)
189 KOG1524 WD40 repeat-containing 99.8 3.9E-17 8.6E-22 154.6 17.2 203 235-463 75-277 (737)
190 KOG0649 WD40 repeat protein [G 99.7 3.7E-16 8E-21 134.3 20.8 222 267-498 12-256 (325)
191 KOG0322 G-protein beta subunit 99.7 4.7E-17 1E-21 141.4 15.5 245 220-469 11-322 (323)
192 KOG1523 Actin-related protein 99.7 2.9E-16 6.3E-21 140.1 20.0 201 264-469 9-235 (361)
193 KOG1524 WD40 repeat-containing 99.7 9.5E-17 2.1E-21 152.0 17.7 248 222-503 13-271 (737)
194 KOG1310 WD40 repeat protein [G 99.7 5E-17 1.1E-21 154.3 15.3 221 218-438 45-313 (758)
195 KOG0642 Cell-cycle nuclear pro 99.7 4.1E-17 8.9E-22 155.7 14.8 219 218-438 339-571 (577)
196 KOG0771 Prolactin regulatory e 99.7 6.7E-17 1.5E-21 149.4 15.6 194 269-470 148-354 (398)
197 KOG2110 Uncharacterized conser 99.7 3.8E-14 8.1E-19 129.2 31.9 190 226-429 49-249 (391)
198 KOG2139 WD40 repeat protein [G 99.7 3.8E-15 8.2E-20 135.1 24.3 230 224-462 99-365 (445)
199 KOG1009 Chromatin assembly com 99.7 4.2E-16 9.1E-21 143.2 17.8 194 265-461 13-249 (434)
200 PRK01742 tolB translocation pr 99.7 7.5E-16 1.6E-20 154.9 21.2 214 220-453 200-426 (429)
201 KOG1587 Cytoplasmic dynein int 99.7 1.9E-15 4.1E-20 151.3 22.9 252 244-502 221-500 (555)
202 KOG1354 Serine/threonine prote 99.7 8.9E-16 1.9E-20 138.2 17.5 249 223-472 25-361 (433)
203 KOG1188 WD40 repeat protein [G 99.7 7.5E-16 1.6E-20 138.7 16.5 186 278-471 41-243 (376)
204 KOG2111 Uncharacterized conser 99.7 2E-14 4.2E-19 128.6 24.8 235 224-471 6-257 (346)
205 KOG1334 WD40 repeat protein [G 99.7 4E-16 8.6E-21 146.5 14.1 269 219-495 138-443 (559)
206 KOG4497 Uncharacterized conser 99.7 2E-14 4.4E-19 128.8 23.7 256 225-500 50-414 (447)
207 PRK03629 tolB translocation pr 99.7 4.2E-14 9.1E-19 141.9 28.5 231 245-498 179-427 (429)
208 KOG3881 Uncharacterized conser 99.7 1.1E-14 2.4E-19 133.5 21.1 261 224-496 56-339 (412)
209 KOG1240 Protein kinase contain 99.7 1.5E-14 3.3E-19 149.5 24.2 247 220-469 1045-1333(1431)
210 KOG1310 WD40 repeat protein [G 99.7 1.5E-15 3.2E-20 144.4 15.3 212 258-472 43-305 (758)
211 KOG2394 WD40 protein DMR-N9 [G 99.7 1.9E-15 4.2E-20 143.5 15.3 171 233-408 183-383 (636)
212 PF04564 U-box: U-box domain; 99.6 7.8E-17 1.7E-21 117.4 3.8 52 1-53 5-57 (73)
213 KOG2321 WD40 repeat protein [G 99.6 3.7E-14 8E-19 135.9 22.7 259 222-501 50-326 (703)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 1.4E-14 3.1E-19 137.6 19.2 222 226-451 126-383 (636)
215 KOG1445 Tumor-specific antigen 99.6 1.8E-14 3.8E-19 139.3 19.5 207 257-469 71-292 (1012)
216 PF10282 Lactonase: Lactonase, 99.6 2.1E-12 4.6E-17 126.0 33.7 263 225-496 38-345 (345)
217 KOG1240 Protein kinase contain 99.6 5.4E-14 1.2E-18 145.5 23.0 220 250-471 1034-1274(1431)
218 PRK03629 tolB translocation pr 99.6 1.7E-13 3.6E-18 137.6 26.4 215 222-452 197-427 (429)
219 KOG1963 WD40 repeat protein [G 99.6 2.5E-13 5.5E-18 136.6 27.1 263 227-497 164-464 (792)
220 PRK04922 tolB translocation pr 99.6 1.2E-13 2.6E-18 139.2 25.4 233 245-498 184-432 (433)
221 KOG4227 WD40 repeat protein [G 99.6 6.5E-14 1.4E-18 128.1 20.9 247 219-469 101-386 (609)
222 KOG0322 G-protein beta subunit 99.6 1.2E-14 2.6E-19 126.5 15.1 230 258-500 7-305 (323)
223 PRK02889 tolB translocation pr 99.6 1.7E-13 3.6E-18 137.7 25.2 234 245-499 176-425 (427)
224 PRK05137 tolB translocation pr 99.6 5.3E-13 1.1E-17 134.7 28.3 202 245-462 182-396 (435)
225 PRK02889 tolB translocation pr 99.6 1.7E-13 3.6E-18 137.7 24.5 219 221-453 193-425 (427)
226 KOG4497 Uncharacterized conser 99.6 6.5E-15 1.4E-19 131.9 12.3 229 228-482 13-248 (447)
227 KOG1272 WD40-repeat-containing 99.6 1E-15 2.2E-20 142.9 7.3 224 227-463 174-400 (545)
228 KOG0644 Uncharacterized conser 99.6 8.9E-16 1.9E-20 152.5 7.0 227 256-502 181-452 (1113)
229 PRK04922 tolB translocation pr 99.6 2.5E-13 5.4E-18 137.0 24.8 216 221-452 201-432 (433)
230 PF08662 eIF2A: Eukaryotic tra 99.6 2.3E-13 5E-18 120.7 20.8 153 314-482 9-186 (194)
231 KOG2111 Uncharacterized conser 99.6 2.6E-12 5.7E-17 115.1 26.9 175 245-430 75-258 (346)
232 smart00504 Ubox Modified RING 99.6 2E-15 4.3E-20 107.8 5.2 52 1-53 2-53 (63)
233 COG2706 3-carboxymuconate cycl 99.6 2.1E-11 4.5E-16 111.8 32.4 271 222-497 38-345 (346)
234 PRK05137 tolB translocation pr 99.6 7.4E-13 1.6E-17 133.7 25.6 217 220-453 198-433 (435)
235 PF08662 eIF2A: Eukaryotic tra 99.6 4.1E-13 8.9E-18 119.1 20.8 155 227-395 9-186 (194)
236 KOG1517 Guanine nucleotide bin 99.6 8.3E-14 1.8E-18 142.0 18.0 203 227-431 1169-1384(1387)
237 PF02239 Cytochrom_D1: Cytochr 99.6 9.1E-12 2E-16 121.5 30.5 258 236-502 6-329 (369)
238 PF02239 Cytochrom_D1: Cytochr 99.6 6.9E-12 1.5E-16 122.4 29.5 245 227-484 40-357 (369)
239 KOG1645 RING-finger-containing 99.5 1.8E-12 4E-17 119.5 22.8 242 218-469 188-460 (463)
240 TIGR02800 propeller_TolB tol-p 99.5 6.3E-12 1.4E-16 126.8 27.2 204 244-463 169-385 (417)
241 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.7E-17 120.2 19.6 215 224-454 106-343 (412)
242 KOG2139 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 118.3 19.2 198 266-472 99-311 (445)
243 PF10282 Lactonase: Lactonase, 99.5 1.6E-10 3.4E-15 112.9 34.8 262 238-502 2-305 (345)
244 PRK00178 tolB translocation pr 99.5 3.1E-11 6.7E-16 122.0 29.2 232 246-498 180-427 (430)
245 KOG4547 WD40 repeat-containing 99.5 7.9E-12 1.7E-16 120.9 21.0 187 233-429 3-221 (541)
246 PRK00178 tolB translocation pr 99.5 2.9E-11 6.4E-16 122.2 26.2 217 221-453 196-428 (430)
247 PRK04792 tolB translocation pr 99.5 5.1E-11 1.1E-15 120.2 27.5 232 246-498 199-446 (448)
248 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.4E-16 123.1 24.6 213 222-450 188-416 (417)
249 KOG2041 WD40 repeat protein [G 99.5 6.8E-12 1.5E-16 123.3 19.7 261 223-500 14-320 (1189)
250 KOG4547 WD40 repeat-containing 99.4 1.7E-11 3.7E-16 118.7 21.7 203 275-483 3-233 (541)
251 PRK04792 tolB translocation pr 99.4 3.9E-11 8.4E-16 121.1 24.9 215 222-452 216-446 (448)
252 KOG1334 WD40 repeat protein [G 99.4 1.8E-12 3.8E-17 122.3 13.5 235 257-498 134-403 (559)
253 PRK01029 tolB translocation pr 99.4 8.9E-11 1.9E-15 117.5 25.6 222 223-454 184-426 (428)
254 KOG2315 Predicted translation 99.4 1.2E-10 2.5E-15 112.2 24.0 228 227-469 129-389 (566)
255 KOG2321 WD40 repeat protein [G 99.4 3.4E-11 7.4E-16 115.9 19.8 234 226-469 97-342 (703)
256 PRK01029 tolB translocation pr 99.4 3.3E-10 7.2E-15 113.4 27.7 213 245-469 165-402 (428)
257 KOG0280 Uncharacterized conser 99.4 5.2E-11 1.1E-15 105.7 18.4 223 243-471 44-285 (339)
258 KOG0974 WD-repeat protein WDR6 99.4 2.1E-11 4.6E-16 125.0 17.1 194 226-429 90-289 (967)
259 KOG1064 RAVE (regulator of V-A 99.4 6.4E-12 1.4E-16 134.6 13.0 200 220-439 2205-2409(2439)
260 COG5170 CDC55 Serine/threonine 99.3 2.1E-11 4.6E-16 108.9 14.1 245 223-468 26-365 (460)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.2E-09 1.6E-13 99.0 32.4 227 245-484 27-340 (352)
262 KOG0280 Uncharacterized conser 99.3 1.2E-10 2.7E-15 103.4 18.5 232 222-461 68-320 (339)
263 KOG4532 WD40-like repeat conta 99.3 3.4E-10 7.3E-15 99.4 20.8 236 228-471 72-332 (344)
264 KOG2314 Translation initiation 99.3 3.6E-10 7.8E-15 108.5 22.7 258 226-502 213-506 (698)
265 KOG1832 HIV-1 Vpr-binding prot 99.3 8E-13 1.7E-17 132.5 5.0 223 218-461 1096-1320(1516)
266 KOG4190 Uncharacterized conser 99.3 1E-11 2.2E-16 118.8 11.9 275 218-500 730-1018(1034)
267 COG2706 3-carboxymuconate cycl 99.3 5.2E-09 1.1E-13 96.3 28.5 256 244-501 15-303 (346)
268 KOG2315 Predicted translation 99.3 9.2E-10 2E-14 106.1 23.2 250 225-501 36-367 (566)
269 PF11789 zf-Nse: Zinc-finger o 99.3 2.6E-12 5.6E-17 87.3 3.7 42 1-42 12-55 (57)
270 KOG4190 Uncharacterized conser 99.3 1E-11 2.3E-16 118.7 7.5 200 258-463 728-938 (1034)
271 KOG1409 Uncharacterized conser 99.3 1.4E-09 3.1E-14 98.7 20.5 199 218-428 63-270 (404)
272 KOG1354 Serine/threonine prote 99.2 2.5E-10 5.3E-15 103.6 15.4 217 265-485 25-313 (433)
273 KOG0974 WD-repeat protein WDR6 99.2 2.9E-10 6.3E-15 116.9 17.8 181 276-469 98-287 (967)
274 KOG1409 Uncharacterized conser 99.2 4.5E-10 9.8E-15 101.9 16.6 244 219-471 20-271 (404)
275 PLN02919 haloacid dehalogenase 99.2 2.1E-08 4.5E-13 110.7 32.6 239 227-471 571-889 (1057)
276 COG4946 Uncharacterized protei 99.2 7E-09 1.5E-13 98.1 24.4 213 233-462 276-508 (668)
277 COG5354 Uncharacterized protei 99.2 1E-08 2.2E-13 97.9 23.7 259 222-501 70-372 (561)
278 KOG2314 Translation initiation 99.2 4.5E-09 9.8E-14 101.1 20.8 244 218-469 244-572 (698)
279 KOG0882 Cyclophilin-related pe 99.2 1.1E-09 2.3E-14 102.9 15.3 251 222-482 8-313 (558)
280 KOG1064 RAVE (regulator of V-A 99.1 2.1E-10 4.5E-15 123.4 11.6 196 263-484 2206-2408(2439)
281 KOG4532 WD40-like repeat conta 99.1 5.5E-09 1.2E-13 91.9 18.2 193 237-429 130-332 (344)
282 PF04762 IKI3: IKI3 family; I 99.1 6.5E-08 1.4E-12 104.9 29.5 265 224-498 22-358 (928)
283 PRK04043 tolB translocation pr 99.1 3E-08 6.4E-13 98.8 24.9 190 225-429 189-401 (419)
284 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.7E-07 3.7E-12 89.7 28.9 205 231-437 53-339 (352)
285 COG5354 Uncharacterized protei 99.1 1.6E-08 3.4E-13 96.7 21.0 233 223-469 32-305 (561)
286 PF08450 SGL: SMP-30/Gluconola 99.1 5E-07 1.1E-11 84.0 31.3 218 228-461 4-244 (246)
287 KOG3914 WD repeat protein WDR4 99.1 1.8E-09 4E-14 100.2 14.2 215 226-452 65-299 (390)
288 KOG0309 Conserved WD40 repeat- 99.1 8.5E-10 1.8E-14 109.3 11.6 259 223-492 24-303 (1081)
289 KOG2066 Vacuolar assembly/sort 99.1 7E-09 1.5E-13 104.2 17.9 184 265-470 39-233 (846)
290 PF04762 IKI3: IKI3 family; I 99.1 2.1E-07 4.5E-12 101.0 30.3 236 222-469 74-378 (928)
291 PLN02919 haloacid dehalogenase 99.1 6.7E-08 1.5E-12 106.7 26.9 202 226-432 626-892 (1057)
292 PF07433 DUF1513: Protein of u 99.0 5.6E-07 1.2E-11 83.2 28.0 232 227-469 8-282 (305)
293 KOG3914 WD repeat protein WDR4 99.0 4.5E-09 9.7E-14 97.6 14.3 163 268-438 65-233 (390)
294 PRK04043 tolB translocation pr 99.0 5E-07 1.1E-11 90.1 30.0 206 245-469 169-397 (419)
295 COG5170 CDC55 Serine/threonine 99.0 8.5E-09 1.8E-13 92.5 12.8 217 265-485 26-321 (460)
296 PF08450 SGL: SMP-30/Gluconola 99.0 2.6E-06 5.6E-11 79.2 29.9 211 270-497 4-233 (246)
297 KOG1832 HIV-1 Vpr-binding prot 99.0 4.9E-10 1.1E-14 113.0 5.0 216 256-501 1092-1314(1516)
298 TIGR03300 assembly_YfgL outer 99.0 5.6E-07 1.2E-11 89.4 26.6 234 234-485 104-349 (377)
299 KOG4714 Nucleoporin [Nuclear s 99.0 1.3E-08 2.7E-13 89.3 12.7 196 226-429 39-255 (319)
300 KOG2041 WD40 repeat protein [G 98.9 1.4E-07 3.1E-12 93.6 21.1 245 216-469 64-336 (1189)
301 KOG2066 Vacuolar assembly/sort 98.9 2.5E-08 5.3E-13 100.4 15.6 186 223-430 39-235 (846)
302 KOG1912 WD40 repeat protein [G 98.9 1.4E-07 3.1E-12 94.4 20.5 233 225-469 17-303 (1062)
303 PF13360 PQQ_2: PQQ-like domai 98.9 6.6E-07 1.4E-11 82.7 24.3 220 243-476 1-236 (238)
304 COG4946 Uncharacterized protei 98.9 3.5E-07 7.6E-12 86.8 21.9 172 234-418 331-507 (668)
305 KOG2695 WD40 repeat protein [G 98.9 4.4E-09 9.5E-14 95.7 8.9 161 281-452 228-402 (425)
306 KOG2695 WD40 repeat protein [G 98.9 5.9E-09 1.3E-13 94.9 9.2 147 326-484 228-386 (425)
307 PF15492 Nbas_N: Neuroblastoma 98.9 1.7E-06 3.6E-11 77.7 24.1 202 222-439 42-270 (282)
308 KOG1275 PAB-dependent poly(A) 98.9 5.6E-08 1.2E-12 99.0 15.5 181 234-427 146-341 (1118)
309 KOG2114 Vacuolar assembly/sort 98.9 6.2E-07 1.4E-11 91.2 22.8 207 225-437 27-252 (933)
310 KOG0309 Conserved WD40 repeat- 98.9 9.5E-09 2.1E-13 102.0 9.4 205 218-428 109-339 (1081)
311 KOG2114 Vacuolar assembly/sort 98.9 3.7E-07 8.1E-12 92.7 20.6 193 272-469 30-242 (933)
312 PF15492 Nbas_N: Neuroblastoma 98.8 4.4E-06 9.6E-11 75.1 24.9 233 229-484 3-269 (282)
313 TIGR03300 assembly_YfgL outer 98.8 2.8E-06 6.1E-11 84.4 26.5 220 235-471 65-298 (377)
314 KOG0882 Cyclophilin-related pe 98.8 7.1E-08 1.5E-12 90.9 13.2 217 219-437 49-314 (558)
315 KOG4714 Nucleoporin [Nuclear s 98.8 4.4E-08 9.5E-13 86.0 9.4 150 232-388 98-255 (319)
316 PLN03208 E3 ubiquitin-protein 98.8 1E-08 2.2E-13 87.2 5.0 54 1-55 19-88 (193)
317 KOG1920 IkappaB kinase complex 98.7 6.3E-06 1.4E-10 87.2 25.4 200 224-431 69-325 (1265)
318 KOG1645 RING-finger-containing 98.7 8.8E-06 1.9E-10 76.1 21.8 236 247-498 175-440 (463)
319 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.3E-10 74.6 22.8 191 234-434 35-236 (238)
320 KOG4642 Chaperone-dependent E3 98.7 6.7E-09 1.4E-13 90.3 1.1 51 2-53 213-264 (284)
321 KOG1912 WD40 repeat protein [G 98.6 4.3E-07 9.3E-12 91.1 13.3 246 220-469 404-740 (1062)
322 PF00400 WD40: WD domain, G-be 98.6 9.4E-08 2E-12 60.5 5.6 39 255-293 1-39 (39)
323 PF07433 DUF1513: Protein of u 98.6 1.2E-05 2.6E-10 74.5 20.8 190 229-424 56-281 (305)
324 KOG3617 WD40 and TPR repeat-co 98.6 3.7E-06 8E-11 85.4 17.1 107 229-340 21-131 (1416)
325 PF00400 WD40: WD domain, G-be 98.5 3.1E-07 6.8E-12 58.1 6.4 38 301-338 2-39 (39)
326 PF00930 DPPIV_N: Dipeptidyl p 98.5 2.7E-05 5.9E-10 76.4 21.8 260 232-502 1-341 (353)
327 PRK11138 outer membrane biogen 98.4 9.3E-05 2E-09 73.9 24.6 232 235-483 120-362 (394)
328 KOG1275 PAB-dependent poly(A) 98.4 2.7E-06 5.9E-11 87.1 13.3 149 225-386 179-341 (1118)
329 KOG3621 WD40 repeat-containing 98.4 8.3E-06 1.8E-10 81.6 15.2 210 265-482 33-253 (726)
330 KOG1920 IkappaB kinase complex 98.4 8.7E-05 1.9E-09 78.9 23.4 207 266-480 69-330 (1265)
331 PF06977 SdiA-regulated: SdiA- 98.4 0.00015 3.3E-09 66.3 21.6 199 224-425 22-247 (248)
332 PF08596 Lgl_C: Lethal giant l 98.4 9.1E-05 2E-09 72.9 21.3 240 225-469 3-334 (395)
333 KOG3621 WD40 repeat-containing 98.4 4.8E-05 1E-09 76.4 19.1 118 224-341 34-155 (726)
334 KOG1008 Uncharacterized conser 98.3 1.8E-07 4E-12 92.0 2.2 198 224-428 57-275 (783)
335 KOG0823 Predicted E3 ubiquitin 98.3 5.1E-07 1.1E-11 78.3 4.6 54 1-55 48-104 (230)
336 PRK02888 nitrous-oxide reducta 98.3 0.00028 6E-09 71.7 24.5 145 331-485 214-425 (635)
337 PF11768 DUF3312: Protein of u 98.3 2.7E-05 5.8E-10 77.0 16.6 114 268-389 208-331 (545)
338 PF02897 Peptidase_S9_N: Proly 98.3 0.0028 6E-08 63.9 30.9 246 226-480 126-412 (414)
339 PF11768 DUF3312: Protein of u 98.3 7.7E-05 1.7E-09 73.8 18.5 112 314-429 209-330 (545)
340 PRK02888 nitrous-oxide reducta 98.3 0.00024 5.1E-09 72.2 22.1 198 244-461 214-450 (635)
341 PF13923 zf-C3HC4_2: Zinc fing 98.3 1.4E-06 3.1E-11 54.8 4.1 39 3-41 1-39 (39)
342 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0014 3E-08 65.5 27.1 214 246-468 62-285 (410)
343 PRK11138 outer membrane biogen 98.2 0.00032 6.9E-09 70.1 22.5 217 235-469 69-311 (394)
344 KOG0883 Cyclophilin type, U bo 98.2 7.9E-07 1.7E-11 82.2 3.3 53 2-55 42-94 (518)
345 PF06977 SdiA-regulated: SdiA- 98.2 0.002 4.3E-08 59.0 25.4 199 260-463 16-242 (248)
346 PF00780 CNH: CNH domain; Int 98.2 0.0027 5.9E-08 59.9 27.3 229 233-485 5-266 (275)
347 PF04053 Coatomer_WDAD: Coatom 98.2 0.00022 4.8E-09 71.2 19.7 143 309-471 31-174 (443)
348 COG3391 Uncharacterized conser 98.2 0.0021 4.5E-08 63.7 26.2 220 227-452 77-308 (381)
349 PF08553 VID27: VID27 cytoplas 98.2 0.00028 6E-09 74.3 20.7 145 277-427 493-646 (794)
350 KOG3617 WD40 and TPR repeat-co 98.1 5.8E-05 1.3E-09 77.0 14.6 198 226-424 62-380 (1416)
351 KOG1008 Uncharacterized conser 98.1 8.2E-07 1.8E-11 87.5 1.6 201 265-470 56-275 (783)
352 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00079 1.7E-08 59.9 19.7 104 234-341 62-166 (354)
353 PF04053 Coatomer_WDAD: Coatom 98.1 0.00043 9.3E-09 69.1 19.7 178 264-466 31-219 (443)
354 COG3391 Uncharacterized conser 98.1 0.013 2.8E-07 58.1 30.0 244 226-484 33-293 (381)
355 PF06433 Me-amine-dh_H: Methyl 98.1 0.011 2.4E-07 55.9 27.1 245 228-485 40-331 (342)
356 PF08596 Lgl_C: Lethal giant l 98.0 0.0011 2.3E-08 65.4 21.3 229 267-502 3-320 (395)
357 cd00216 PQQ_DH Dehydrogenases 98.0 0.0061 1.3E-07 62.6 27.0 231 236-483 111-433 (488)
358 KOG3039 Uncharacterized conser 98.0 5.2E-06 1.1E-10 72.0 3.7 56 1-57 222-281 (303)
359 TIGR00599 rad18 DNA repair pro 98.0 5E-06 1.1E-10 80.2 3.3 49 1-50 27-75 (397)
360 COG0823 TolB Periplasmic compo 98.0 0.00064 1.4E-08 67.7 18.2 186 223-420 192-390 (425)
361 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.011 2.3E-07 58.2 26.7 232 223-461 42-346 (353)
362 COG3386 Gluconolactonase [Carb 97.9 0.0059 1.3E-07 58.0 23.3 221 230-463 31-276 (307)
363 COG0823 TolB Periplasmic compo 97.9 0.00084 1.8E-08 66.8 17.9 195 255-463 182-390 (425)
364 COG3386 Gluconolactonase [Carb 97.8 0.0087 1.9E-07 56.8 22.7 211 272-497 31-263 (307)
365 KOG4441 Proteins containing BT 97.8 0.0063 1.4E-07 63.3 22.3 237 232-484 282-558 (571)
366 PF08553 VID27: VID27 cytoplas 97.8 0.0016 3.4E-08 68.8 17.7 224 236-469 494-769 (794)
367 cd00216 PQQ_DH Dehydrogenases 97.7 0.028 6E-07 57.8 25.4 199 235-437 61-328 (488)
368 KOG4640 Anaphase-promoting com 97.6 0.00024 5.2E-09 70.6 9.2 94 223-319 20-114 (665)
369 PF13920 zf-C3HC4_3: Zinc fing 97.6 9.9E-05 2.1E-09 49.3 4.6 44 2-46 4-48 (50)
370 KOG2164 Predicted E3 ubiquitin 97.6 3.6E-05 7.7E-10 74.8 3.3 54 1-55 187-245 (513)
371 PF03178 CPSF_A: CPSF A subuni 97.6 0.022 4.7E-07 55.2 22.8 173 246-428 3-202 (321)
372 PF15227 zf-C3HC4_4: zinc fing 97.6 6.7E-05 1.5E-09 47.7 3.3 33 3-36 1-33 (42)
373 PF13445 zf-RING_UBOX: RING-ty 97.6 8.1E-05 1.8E-09 47.3 3.4 31 3-35 1-35 (43)
374 PF06433 Me-amine-dh_H: Methyl 97.6 0.041 8.9E-07 52.1 22.5 207 228-439 99-331 (342)
375 PF04841 Vps16_N: Vps16, N-ter 97.5 0.047 1E-06 54.6 24.2 175 224-411 81-271 (410)
376 PF14870 PSII_BNR: Photosynthe 97.5 0.081 1.8E-06 50.0 31.0 262 223-499 16-286 (302)
377 KOG2395 Protein involved in va 97.5 0.0042 9.1E-08 60.9 15.8 146 276-428 344-500 (644)
378 KOG4640 Anaphase-promoting com 97.5 0.00054 1.2E-08 68.2 9.9 93 358-452 21-115 (665)
379 PF03178 CPSF_A: CPSF A subuni 97.5 0.016 3.4E-07 56.2 20.2 144 235-387 42-202 (321)
380 PF14583 Pectate_lyase22: Olig 97.5 0.11 2.5E-06 50.2 27.6 221 230-463 42-303 (386)
381 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.013 2.7E-07 45.8 14.7 100 268-382 2-109 (111)
382 smart00320 WD40 WD40 repeats. 97.4 0.00033 7.1E-09 42.9 5.0 39 255-293 2-40 (40)
383 COG3204 Uncharacterized protei 97.4 0.048 1E-06 50.0 20.2 194 223-417 85-301 (316)
384 PF02897 Peptidase_S9_N: Proly 97.4 0.1 2.2E-06 52.5 25.4 191 268-469 126-356 (414)
385 PF05694 SBP56: 56kDa selenium 97.4 0.074 1.6E-06 51.9 22.4 223 234-462 86-393 (461)
386 PRK13616 lipoprotein LpqB; Pro 97.4 0.039 8.4E-07 57.6 22.3 231 244-484 328-582 (591)
387 COG3490 Uncharacterized protei 97.4 0.04 8.7E-07 50.1 19.1 209 228-439 72-321 (366)
388 KOG0287 Postreplication repair 97.4 3.7E-05 8E-10 70.1 0.1 49 2-51 25-73 (442)
389 PF13639 zf-RING_2: Ring finge 97.4 0.00023 5E-09 46.0 3.8 39 2-41 2-43 (44)
390 cd00162 RING RING-finger (Real 97.4 0.00025 5.5E-09 46.0 3.9 44 2-45 1-45 (45)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.27 5.9E-06 50.9 28.4 157 235-392 120-338 (527)
392 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.12 2.5E-06 46.5 24.3 136 235-382 23-160 (354)
393 PF00780 CNH: CNH domain; Int 97.3 0.07 1.5E-06 50.3 21.3 152 276-436 6-173 (275)
394 PHA02713 hypothetical protein; 97.3 0.01 2.3E-07 61.8 16.5 187 234-431 303-536 (557)
395 PF04641 Rtf2: Rtf2 RING-finge 97.3 0.00028 6E-09 65.6 4.3 53 1-55 114-170 (260)
396 KOG2979 Protein involved in DN 97.3 9.5E-05 2.1E-09 65.4 1.2 43 2-44 178-222 (262)
397 PHA02713 hypothetical protein; 97.3 0.045 9.8E-07 57.1 21.0 218 246-481 273-542 (557)
398 smart00320 WD40 WD40 repeats. 97.2 0.00099 2.1E-08 40.6 5.3 38 301-338 3-40 (40)
399 PF05096 Glu_cyclase_2: Glutam 97.2 0.17 3.7E-06 46.4 23.2 187 225-419 46-250 (264)
400 PF05096 Glu_cyclase_2: Glutam 97.2 0.17 3.7E-06 46.3 25.1 202 256-469 34-258 (264)
401 PF00097 zf-C3HC4: Zinc finger 97.2 0.00073 1.6E-08 42.9 4.4 38 3-40 1-40 (41)
402 COG3204 Uncharacterized protei 97.2 0.19 4.2E-06 46.2 21.4 197 262-463 82-304 (316)
403 COG3490 Uncharacterized protei 97.1 0.049 1.1E-06 49.6 16.7 145 313-460 70-243 (366)
404 PRK13616 lipoprotein LpqB; Pro 97.1 0.033 7.2E-07 58.1 18.4 183 225-422 351-561 (591)
405 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.051 1.1E-06 42.5 14.6 100 226-335 2-109 (111)
406 KOG2444 WD40 repeat protein [G 97.1 0.00096 2.1E-08 58.4 5.5 142 280-429 33-178 (238)
407 COG5432 RAD18 RING-finger-cont 97.1 0.00025 5.4E-09 63.4 1.6 44 2-46 27-70 (391)
408 KOG3039 Uncharacterized conser 97.0 0.00041 9E-09 60.5 2.6 31 2-33 45-75 (303)
409 KOG2079 Vacuolar assembly/sort 97.0 0.022 4.7E-07 60.7 15.0 101 234-339 98-202 (1206)
410 KOG2079 Vacuolar assembly/sort 97.0 0.0033 7.2E-08 66.6 9.2 105 368-472 98-205 (1206)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.62 1.3E-05 48.3 25.7 193 235-433 69-338 (527)
412 KOG1897 Damage-specific DNA bi 96.9 0.58 1.3E-05 50.0 24.4 256 225-499 585-879 (1096)
413 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.0014 3.1E-08 60.8 5.0 54 2-55 36-93 (260)
414 PF14870 PSII_BNR: Photosynthe 96.9 0.43 9.4E-06 45.2 23.3 152 262-421 141-296 (302)
415 PRK10115 protease 2; Provision 96.9 0.9 2E-05 48.8 30.6 244 225-480 128-402 (686)
416 PF15390 DUF4613: Domain of un 96.8 0.049 1.1E-06 54.6 15.4 151 266-428 20-186 (671)
417 smart00184 RING Ring finger. E 96.8 0.0013 2.9E-08 40.8 3.2 38 3-41 1-39 (39)
418 KOG4441 Proteins containing BT 96.7 0.085 1.8E-06 55.0 17.4 187 234-431 332-549 (571)
419 PF14583 Pectate_lyase22: Olig 96.7 0.62 1.4E-05 45.2 22.0 200 251-460 16-255 (386)
420 PHA03098 kelch-like protein; P 96.7 0.14 3.1E-06 53.4 19.3 202 275-492 293-529 (534)
421 KOG4499 Ca2+-binding protein R 96.7 0.32 6.9E-06 43.2 17.7 209 278-497 28-262 (310)
422 KOG2395 Protein involved in va 96.7 0.024 5.2E-07 55.8 11.9 144 234-386 344-499 (644)
423 TIGR02604 Piru_Ver_Nterm putat 96.7 0.74 1.6E-05 45.4 26.3 146 225-378 15-204 (367)
424 COG5113 UFD2 Ubiquitin fusion 96.7 0.0013 2.8E-08 65.4 3.3 52 2-53 856-907 (929)
425 KOG2280 Vacuolar assembly/sort 96.7 0.34 7.3E-06 50.2 20.2 224 223-456 43-273 (829)
426 KOG2042 Ubiquitin fusion degra 96.7 0.002 4.4E-08 68.3 4.8 51 3-53 873-923 (943)
427 PF14835 zf-RING_6: zf-RING of 96.7 0.00044 9.6E-09 47.2 -0.0 49 1-51 8-56 (65)
428 PF15390 DUF4613: Domain of un 96.6 0.11 2.5E-06 52.1 16.3 174 311-503 20-217 (671)
429 PHA03098 kelch-like protein; P 96.6 0.21 4.6E-06 52.1 19.6 186 233-431 293-514 (534)
430 KOG1002 Nucleotide excision re 96.6 0.00091 2E-08 64.9 1.6 47 2-49 538-589 (791)
431 TIGR03074 PQQ_membr_DH membran 96.5 1.3 2.9E-05 47.7 24.9 198 235-436 194-485 (764)
432 PF12234 Rav1p_C: RAVE protein 96.5 0.075 1.6E-06 55.1 14.7 110 360-469 32-155 (631)
433 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.2E-07 38.7 5.3 34 223-257 11-44 (47)
434 KOG2444 WD40 repeat protein [G 96.5 0.01 2.3E-07 52.1 7.0 104 235-341 70-178 (238)
435 KOG3630 Nuclear pore complex, 96.4 0.042 9.1E-07 58.9 12.5 147 312-460 102-261 (1405)
436 PF10647 Gmad1: Lipoprotein Lp 96.4 0.82 1.8E-05 42.4 23.5 147 267-421 25-187 (253)
437 KOG1916 Nuclear protein, conta 96.4 0.0078 1.7E-07 62.6 6.6 174 218-433 127-328 (1283)
438 PHA02790 Kelch-like protein; P 96.3 0.32 7E-06 49.9 18.4 182 234-430 271-472 (480)
439 PF07995 GSDH: Glucose / Sorbo 96.3 1.2 2.5E-05 43.3 23.9 238 226-467 4-330 (331)
440 PF12678 zf-rbx1: RING-H2 zinc 96.3 0.006 1.3E-07 44.3 3.9 41 2-42 21-73 (73)
441 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.3E-07 37.3 5.7 34 357-391 11-44 (47)
442 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 1.5 3.2E-05 43.5 27.1 88 228-319 6-117 (415)
443 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.73 1.6E-05 45.7 19.1 82 358-439 308-409 (415)
444 KOG3630 Nuclear pore complex, 96.2 0.12 2.6E-06 55.7 14.0 145 267-417 102-261 (1405)
445 TIGR02604 Piru_Ver_Nterm putat 96.1 0.45 9.8E-06 46.9 17.8 152 266-420 14-204 (367)
446 KOG4499 Ca2+-binding protein R 96.1 0.91 2E-05 40.4 17.8 138 266-409 109-263 (310)
447 COG4257 Vgb Streptogramin lyas 96.1 1.1 2.4E-05 40.9 21.6 225 225-458 63-291 (353)
448 KOG1916 Nuclear protein, conta 96.1 0.014 3E-07 60.9 6.7 185 285-479 109-328 (1283)
449 PF10647 Gmad1: Lipoprotein Lp 96.0 1.3 2.9E-05 41.0 21.7 152 225-380 25-188 (253)
450 PF05694 SBP56: 56kDa selenium 95.9 2 4.2E-05 42.4 22.0 195 276-472 86-344 (461)
451 PRK13684 Ycf48-like protein; P 95.9 1.9 4E-05 42.0 28.8 260 223-499 45-313 (334)
452 KOG1897 Damage-specific DNA bi 95.8 3.5 7.6E-05 44.4 25.5 229 225-461 489-733 (1096)
453 PF10433 MMS1_N: Mono-function 95.7 3.1 6.7E-05 43.1 23.0 255 232-498 219-503 (504)
454 PF10214 Rrn6: RNA polymerase 95.7 3.4 7.5E-05 45.1 23.4 125 358-482 146-288 (765)
455 PF12234 Rav1p_C: RAVE protein 95.6 0.57 1.2E-05 48.8 16.2 112 311-427 30-155 (631)
456 KOG1813 Predicted E3 ubiquitin 95.6 0.0043 9.4E-08 56.2 0.8 44 1-45 242-285 (313)
457 COG5276 Uncharacterized conser 95.6 2 4.2E-05 39.8 25.6 191 225-429 88-286 (370)
458 KOG3113 Uncharacterized conser 95.5 0.043 9.3E-07 48.6 6.4 51 1-54 112-166 (293)
459 PRK13684 Ycf48-like protein; P 95.4 2.9 6.3E-05 40.6 26.8 150 310-467 172-328 (334)
460 COG5627 MMS21 DNA repair prote 95.3 0.0059 1.3E-07 53.1 0.7 50 2-51 191-244 (275)
461 COG5276 Uncharacterized conser 95.3 2.4 5.2E-05 39.2 23.7 161 265-436 86-249 (370)
462 PF14634 zf-RING_5: zinc-RING 95.3 0.014 3.1E-07 37.5 2.2 40 3-43 2-44 (44)
463 COG5167 VID27 Protein involved 95.1 1.9 4.1E-05 42.9 16.8 146 276-428 478-632 (776)
464 PF06416 DUF1076: Protein of u 95.1 0.038 8.3E-07 42.3 4.3 52 2-53 42-98 (113)
465 TIGR00570 cdk7 CDK-activating 95.0 0.15 3.2E-06 47.7 8.8 50 2-52 5-60 (309)
466 KOG4628 Predicted E3 ubiquitin 94.9 0.024 5.1E-07 53.8 3.5 72 2-74 231-307 (348)
467 PLN00033 photosystem II stabil 94.9 4.5 9.9E-05 40.1 31.9 135 360-500 241-382 (398)
468 COG5243 HRD1 HRD ubiquitin lig 94.8 0.037 8E-07 51.8 4.3 52 2-53 289-352 (491)
469 PF14761 HPS3_N: Hermansky-Pud 94.8 2.2 4.7E-05 37.9 14.8 139 323-469 29-213 (215)
470 KOG2660 Locus-specific chromos 94.7 0.0074 1.6E-07 55.8 -0.3 47 1-47 16-62 (331)
471 COG5167 VID27 Protein involved 94.7 1.5 3.3E-05 43.5 15.0 139 321-469 478-631 (776)
472 KOG0297 TNF receptor-associate 94.6 0.016 3.5E-07 57.1 1.7 52 1-52 22-73 (391)
473 PF08728 CRT10: CRT10; InterP 94.5 2.4 5.2E-05 44.8 16.9 148 235-386 49-245 (717)
474 PRK10115 protease 2; Provision 94.5 8.5 0.00019 41.5 26.4 191 266-469 127-343 (686)
475 PF10433 MMS1_N: Mono-function 94.5 7 0.00015 40.5 21.8 220 224-452 256-503 (504)
476 TIGR03118 PEPCTERM_chp_1 conse 94.4 4.3 9.3E-05 38.0 25.9 226 226-452 25-307 (336)
477 PF14781 BBS2_N: Ciliary BBSom 94.2 1.6 3.5E-05 35.4 11.8 104 362-469 3-124 (136)
478 PF07250 Glyoxal_oxid_N: Glyox 94.2 1.7 3.6E-05 39.8 13.4 149 247-397 48-207 (243)
479 KOG2377 Uncharacterized conser 94.2 1.2 2.7E-05 43.5 13.0 146 269-418 26-172 (657)
480 PF13449 Phytase-like: Esteras 94.1 4.9 0.00011 38.9 17.6 160 311-471 20-250 (326)
481 KOG1900 Nuclear pore complex, 94.0 1.3 2.9E-05 48.9 14.4 143 242-388 96-273 (1311)
482 PF10395 Utp8: Utp8 family; I 94.0 9.2 0.0002 40.1 23.8 241 225-469 29-304 (670)
483 PF02891 zf-MIZ: MIZ/SP-RING z 94.0 0.11 2.3E-06 34.4 4.0 44 1-44 3-50 (50)
484 PLN02153 epithiospecifier prot 93.8 6.9 0.00015 38.1 23.5 150 234-390 32-228 (341)
485 PF02333 Phytase: Phytase; In 93.8 7.2 0.00016 38.2 18.7 169 320-499 66-267 (381)
486 PF10168 Nup88: Nuclear pore c 93.8 11 0.00025 40.4 21.2 80 310-389 84-181 (717)
487 PF10168 Nup88: Nuclear pore c 93.8 5.8 0.00013 42.6 18.5 73 225-298 86-182 (717)
488 KOG2247 WD40 repeat-containing 93.6 0.018 3.8E-07 56.2 -0.4 140 268-417 37-177 (615)
489 KOG1898 Splicing factor 3b, su 93.5 5.3 0.00012 43.4 17.3 158 334-499 855-1030(1205)
490 PF08728 CRT10: CRT10; InterP 93.4 3.8 8.2E-05 43.4 16.0 107 321-427 113-245 (717)
491 COG3823 Glutamine cyclotransfe 93.4 5 0.00011 35.3 13.9 177 234-417 55-247 (262)
492 TIGR03118 PEPCTERM_chp_1 conse 93.2 7.4 0.00016 36.5 23.1 210 267-484 24-289 (336)
493 PHA02790 Kelch-like protein; P 93.1 2.5 5.5E-05 43.4 14.4 144 234-389 318-472 (480)
494 PF13449 Phytase-like: Esteras 93.1 8.4 0.00018 37.3 17.3 151 266-417 20-232 (326)
495 PF07569 Hira: TUP1-like enhan 92.9 0.71 1.5E-05 41.7 8.8 66 364-429 17-96 (219)
496 PF07995 GSDH: Glucose / Sorbo 92.8 10 0.00022 36.9 24.1 109 267-378 3-134 (331)
497 COG4257 Vgb Streptogramin lyas 92.8 7.8 0.00017 35.7 18.2 202 268-478 64-268 (353)
498 COG3823 Glutamine cyclotransfe 92.6 6.8 0.00015 34.5 16.0 182 276-469 55-256 (262)
499 PF07795 DUF1635: Protein of u 92.6 0.27 5.8E-06 43.1 5.4 53 82-134 9-61 (214)
500 PF10313 DUF2415: Uncharacteri 92.6 0.47 1E-05 30.0 5.0 32 358-389 1-35 (43)
No 1
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.9e-109 Score=751.60 Aligned_cols=486 Identities=53% Similarity=0.798 Sum_probs=438.1
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccCCCccCCCCCCCCChhhHHHhhhhhh
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEW 80 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~sip~ll~~~q~Ew 80 (504)
|+|+||||+|++|||||+||++||||||||||.++|+||||++||+++|||+||.+..++||||+++|||+||++|||||
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~~satSIPalL~~lQdEW 80 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKPPSATSIPALLKTLQDEW 80 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCCCCccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhhhcCcccccccchhhhhcCCCCCCCCC
Q 010669 81 DGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDE 160 (504)
Q Consensus 81 da~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (504)
|++|||+|+||+||+.+|||||||||||||||||||||.|||++||++|+++..+.+.............+... .
T Consensus 81 DavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~-----v 155 (506)
T KOG0289|consen 81 DAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVG-----V 155 (506)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhh-----h
Confidence 99999999999999999999999999999999999999999999999999999887754322211111111111 1
Q ss_pred cCCcCccccCCCCCHHHHHHHHHHHHHHHHhhccc--CCCCCCCChhHHhhccccceec-cccCCCCCeEEEEeccCCCE
Q 010669 161 DLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSKDV 237 (504)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I~~~~~s~~~~~ 237 (504)
+++.... ..|+.+.++..+.+....|++.||+| +.|+.++..+.+..|.+...+. +|.....+|.++...+..+.
T Consensus 156 a~ge~~d--~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ 233 (506)
T KOG0289|consen 156 AAGESED--QPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSK 233 (506)
T ss_pred hcCCccc--cccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCc
Confidence 1111111 24789999999999999999999999 8899999999999999999998 88888999999999998889
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (504)
Q Consensus 238 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (504)
+++|+.|..+.++|...++.+.+++||...|+.+.|+++...+++++.|..|+||..... .+......|..+|+.+.
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLS 310 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc---cCccccccccccceeee
Confidence 999999999999999999999999999999999999999999999999999999998765 45566678999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC
Q 010669 318 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG 397 (504)
Q Consensus 318 ~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~ 397 (504)
.||.|.||++++.||++.+.|++++..+...... ...-.+++.+|||||.+|++|..||.|+|||++++..+..|.+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999999999999999999999999988877632 3345799999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccc
Q 010669 398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADW 476 (504)
Q Consensus 398 ~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~ 476 (504)
|.++|..++|+.||+||+++++|+ |++||+|+.+.++++.... ..++.++.|++.|.||+.+|.+++||.+.+.++.|
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 999999999999999999999999 9999999999999998765 34899999999999999999999999998888999
Q ss_pred eeEEEccCCCCCCceeEEEEeecCcc
Q 010669 477 NCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 477 ~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.++..+..| .+..+++.|-..-|.
T Consensus 467 ~~~~~~~~~--sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 467 TEIKELADH--SGLSTGVRFGEHAQY 490 (506)
T ss_pred eeeehhhhc--ccccceeeecccceE
Confidence 999999998 677888888665543
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-49 Score=358.78 Aligned_cols=303 Identities=27% Similarity=0.462 Sum_probs=265.8
Q ss_pred HHHHHHHHhhcccCCCCCC---CChhHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE
Q 010669 183 DCNAALSQQRKKRQVPPAL---APIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT 259 (504)
Q Consensus 183 ~~~~~l~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~ 259 (504)
.+...|...|..+..|..- .....++............+-..+|..+.|+.+++.|+||+.+|.++||+..+...+.
T Consensus 132 Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~ 211 (459)
T KOG0272|consen 132 RAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ 211 (459)
T ss_pred HHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE
Confidence 3344455555555554431 1122233222222233345567899999999999999999999999999999999999
Q ss_pred EcccCccceeEEEEeeC--CCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669 260 TLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (504)
Q Consensus 260 ~~~~h~~~v~~l~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (504)
+|.+|...|.++.|+|. +..+++|+.||++++|++.+. .++..+.+|...|..++|||+|++|++++.|.++++|
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 99999999999999996 558999999999999999886 6788899999999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417 (504)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~ 417 (504)
|++++..+.... +|...|.+++|+|||.++++|+.|..-+|||+|+++++..+.+|..+|.+|.|+|||+.|++|
T Consensus 289 D~~tk~ElL~QE-----GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 289 DLETKSELLLQE-----GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred ccccchhhHhhc-----ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence 999988776654 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC-CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeE
Q 010669 418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASF 493 (504)
Q Consensus 418 ~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~-~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~ 493 (504)
+.|+ ++|||++..+.+.++..| ..-|+.+.|+| .|.+|++++.| ++||.- .+|.+++++.|| ++.|.+
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~----~~~~~~ksLaGH--e~kV~s 435 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWST----RTWSPLKSLAGH--EGKVIS 435 (459)
T ss_pred CCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecC----CCcccchhhcCC--ccceEE
Confidence 9998 999999999998888776 77899999998 78999999999 999996 899999999999 999999
Q ss_pred EEEeecCc
Q 010669 494 LFLFVLGQ 501 (504)
Q Consensus 494 l~~~~~g~ 501 (504)
++++++|+
T Consensus 436 ~Dis~d~~ 443 (459)
T KOG0272|consen 436 LDISPDSQ 443 (459)
T ss_pred EEeccCCc
Confidence 99999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-44 Score=326.40 Aligned_cols=268 Identities=23% Similarity=0.391 Sum_probs=240.8
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+|..+|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|++||..+++
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CcceeEEeccCCcCeEEEEEcc-----CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
.....+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+. +|..+|+|+.|--+| +++
T Consensus 191 --~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-----gHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 191 --QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-----GHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred --cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-----cCccceEEEEEcCCc-eEE
Confidence 55678899999999999977 46799999999999999999999888876 788889999887654 677
Q ss_pred EEeCCCcEEEEEcCCCce--------------------------------------------------------------
Q 010669 374 TGTSEALVKIWDVKSQAN-------------------------------------------------------------- 391 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~-------------------------------------------------------------- 391 (504)
+|+.|++|++|+...|.+
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 888888888887544322
Q ss_pred -----------------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669 392 -----------------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (504)
Q Consensus 392 -----------------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~ 453 (504)
+..+.+|..-|+.+.||||++++++++-|. |++||.++|+.+.+|.+| -..|+.++|+.|
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH--v~~VYqvawsaD 420 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH--VAAVYQVAWSAD 420 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc--cceeEEEEeccC
Confidence 222345677799999999999999999998 999999999999999887 689999999999
Q ss_pred CCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 454 g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.++|++|+.| ++||++ ++.+....++|| .+.|.+++++|+|+.
T Consensus 421 sRLlVS~SkDsTLKvw~V----~tkKl~~DLpGh--~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDV----RTKKLKQDLPGH--ADEVFAVDWSPDGQR 465 (480)
T ss_pred ccEEEEcCCCceEEEEEe----eeeeecccCCCC--CceEEEEEecCCCce
Confidence 9999999999 999999 778889999999 889999999999974
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-42 Score=300.31 Aligned_cols=275 Identities=21% Similarity=0.315 Sum_probs=255.1
Q ss_pred eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (504)
Q Consensus 215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~ 294 (504)
.....++|.+.|.++.|++|+++|++++.||.+.|||.-+...+..+.-....|..++|+|.|+++++|+-|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34578899999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred CCC---CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCC
Q 010669 295 SED---GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGL 370 (504)
Q Consensus 295 ~~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~ 370 (504)
.+. +.....+.+.+|.+.+.|+.|-+ ..+|+++|.|.++.+||+++++.+..+. +|...|.+++++| +++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-----GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-----GHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-----CCcccEEEEecCCCCCC
Confidence 854 23355677889999999999986 6789999999999999999999998886 8889999999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEE
Q 010669 371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 449 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~ 449 (504)
.|++|+-|+..++||+|.+.+++.|.+|.+.|+.++|.|+|.-+++|++|+ .++||+|..+.+..+.......+|++++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 999999999999999999999999999999999999999999999999998 9999999999998888766678999999
Q ss_pred ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 450 ~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
|+.+|++|++|..| +.|||. -.++.+..+.+| ++.|+++.++|+|-
T Consensus 281 FS~SGRlLfagy~d~~c~vWDt----lk~e~vg~L~GH--eNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDT----LKGERVGVLAGH--ENRVSCLGVSPDGM 328 (343)
T ss_pred EcccccEEEeeecCCceeEeec----cccceEEEeecc--CCeeEEEEECCCCc
Confidence 99999999999888 999997 678889999999 99999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.8e-41 Score=306.09 Aligned_cols=246 Identities=25% Similarity=0.414 Sum_probs=231.4
Q ss_pred cceeccccCCCCCeEEEEeccC--CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669 213 LASHPLHKTSKPGIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290 (504)
Q Consensus 213 ~~~~~~~~~~~~~I~~~~~s~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~ 290 (504)
.+....+.+|.+.|.++.|+|. +..+|+|+.||++++|++.+...+..+.+|...|..++|+|+|++|.|++.|.+-+
T Consensus 207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR 286 (459)
T ss_pred cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence 3445567899999999999997 56899999999999999999899999999999999999999999999999999999
Q ss_pred EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (504)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~ 370 (504)
+||+.+. .......||...|.+++|+|||..+++|+.|..-+|||+++|.++..+. +|...|..++|+|+|.
T Consensus 287 lWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-----gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 287 LWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-----GHIKEILSVAFSPNGY 358 (459)
T ss_pred hcccccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-----ccccceeeEeECCCce
Confidence 9999986 4555567999999999999999999999999999999999999998886 7889999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669 371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i 448 (504)
.||+|+.|++++|||++..+.+.++.+|..-|+.|.|+| .|++|++++.|+ +++|..++..+++++.+| .+.|.++
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~ 436 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISL 436 (459)
T ss_pred EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEE
Confidence 999999999999999999999999999999999999999 799999999998 999999999999999887 7899999
Q ss_pred EECCCCCEEEEEeCc--EEEEE
Q 010669 449 DFDHSGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 449 ~~~~~g~~l~~~~~d--i~vw~ 468 (504)
.++++++++++++.| +++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 999999999999999 99995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-40 Score=296.90 Aligned_cols=244 Identities=25% Similarity=0.416 Sum_probs=216.7
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-EEEcccCccceeEEEEee-----CCCEEEEEeCCCcEEEE
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVT-----EGDLFLTGSADKTVRVW 292 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~-----~~~~l~s~s~dg~i~iw 292 (504)
-++|+.-|.|++|+|||+.||+|+.||+|++||.++|+. ...+.+|...|++++|.| ..++|++++.||+|+||
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 468999999999999999999999999999999998865 567899999999999975 56689999999999999
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC--------------------
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG-------------------- 352 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------------- 352 (504)
|+..+ .++..+.+|+.+|+|+.|-- ..+|++||.|++|++|+...|.+...+..+.
T Consensus 233 d~~~~---~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 233 DTKLG---TCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred EccCc---eEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 99876 78999999999999999963 4589999999999999986654322221110
Q ss_pred ------------------------------------------------------CCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 353 ------------------------------------------------------TDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 353 ------------------------------------------------------~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
..+|...|+.+.|+||++++|+++.|
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 13566778999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l 457 (504)
..|++||.++|+.+.+|++|-++|+.++|+.|.++|++|+.|. +++||+++.+....+.+| ...|.++.|+|||..+
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh--~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH--ADEVFAVDWSPDGQRV 466 (480)
T ss_pred cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC--CceEEEEEecCCCcee
Confidence 9999999999999999999999999999999999999999998 999999998887777665 7899999999999999
Q ss_pred EEEeCc--EEEEE
Q 010669 458 AVASAD--IRVYQ 468 (504)
Q Consensus 458 ~~~~~d--i~vw~ 468 (504)
++|+.| +++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 999999 88884
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6e-39 Score=278.44 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=217.8
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
.+.+|...|..+..++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++..
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g- 136 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG- 136 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-
Confidence 4667889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcceeEEeccC--CcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 298 GNYDCKHTLKDH--TAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 298 ~~~~~~~~~~~h--~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
.+..++..+ .+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+. +|...++.++++|||.+.+
T Consensus 137 ---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 137 ---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----GHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred ---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----cccccEEEEEECCCCCEEe
Confidence 455665544 789999999998 6799999999999999999988777665 7889999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCC-------CCCee
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDS-------ETPTN 446 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~-------~~~v~ 446 (504)
+|+.||.+.+||++.++.+..+. |...|.+++|+|+.++|+.+...+|+|||+.+...+..+..... .....
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 99999999999999999988877 77899999999999999999888899999999888776654321 22356
Q ss_pred EEEECCCCCEEEEEeCc--EEEEEe
Q 010669 447 SVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 447 ~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+++|+++|+.|++|-.| |++|.+
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEe
Confidence 78999999999999888 999998
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-38 Score=274.10 Aligned_cols=273 Identities=24% Similarity=0.380 Sum_probs=236.3
Q ss_pred ccccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCC-----CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669 217 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP-----SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~-----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~ 290 (504)
....+|.+.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.||...|..+..+++|++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 346789999999999887 4689999999999999865 4677899999999999999999999999999999999
Q ss_pred EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--
Q 010669 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-- 368 (504)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd-- 368 (504)
+||+.++ +..+.|.+|...|.+++|++++..+++|+.|.+|++|++-... ..++.. ..+...|+|+.|+|+
T Consensus 89 lWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~---~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 89 LWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHE---DSHREWVSCVRFSPNES 161 (315)
T ss_pred EEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEec---CCCcCcEEEEEEcCCCC
Confidence 9999986 7888899999999999999999999999999999999987654 444432 133689999999996
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669 369 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~ 447 (504)
..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.|+ +.+||++.++.+..+.. ...|.+
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~s 238 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNS 238 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeEee
Confidence 78999999999999999999999999999999999999999999999999999 99999999999877765 578999
Q ss_pred EEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC-------CCCCceeEEEEeecCccc
Q 010669 448 VDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL-------SGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 448 i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h-------~~~~~v~~l~~~~~g~~~ 503 (504)
++|+|+...|+.+... |+|||+ ....++..+... .......+++++++||++
T Consensus 239 l~fspnrywL~~at~~sIkIwdl----~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATATSIKIWDL----ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred EEecCCceeEeeccCCceEEEec----cchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 9999999888888777 999999 444455444321 012345778999999864
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.3e-39 Score=313.27 Aligned_cols=240 Identities=30% Similarity=0.500 Sum_probs=222.5
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-------------------------------ceEEEcccCccceeEE
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-------------------------------QIVTTLSGHSKKVTSV 271 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------------------------------~~~~~~~~h~~~v~~l 271 (504)
...++|+.|++|+.+||.|-.|..|++|.+... ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 467999999999999999999999999987631 1234567999999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669 272 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (504)
Q Consensus 272 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (504)
.|+|+.++|++++.|+++|+|.+.+. .+...+++|..+|+++.|+|-|-||+++|.|++-++|......+.+.+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred eecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--
Confidence 99999999999999999999999875 7888889999999999999999999999999999999999888777775
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 430 (504)
Q Consensus 352 ~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~ 430 (504)
+|-+.|.|+.|||+.+++++|+.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.|+ |.+||+.++
T Consensus 533 ---ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 533 ---GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ---ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 7888999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc
Q 010669 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 472 (504)
Q Consensus 431 ~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~ 472 (504)
..+..+..| .+.|.++.|+.+|..||+||.| |++||+...
T Consensus 610 ~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 610 SLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999887 7899999999999999999999 999998543
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=265.30 Aligned_cols=235 Identities=22% Similarity=0.449 Sum_probs=216.7
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
..-|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|++.+.|+.|.+ ...|++++.|.+..+||+++
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET 175 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc
Confidence 457999999999999999999999999998854 45667899999999999987 45799999999999999999
Q ss_pred CCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
+ +.+..|.+|.+.|.+++++| +++.|++|+.|+..++||++.+.+++.+. +|...|+++.|+|+|.-|++|
T Consensus 176 g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-----ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 176 G---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-----GHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred c---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-----ccccccceEEEccCCCeeeec
Confidence 7 78889999999999999999 99999999999999999999999999987 888999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 376 TSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
+.|++.++||+|..+.+..|.. ...+|++++||..|++|++|..|. +.+||.-+++.+-.+.+| ...|.++..+|
T Consensus 248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~ 325 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSP 325 (343)
T ss_pred CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECC
Confidence 9999999999999998888863 345899999999999999998887 999999999988888877 78999999999
Q ss_pred CCCEEEEEeCc--EEEEE
Q 010669 453 SGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~ 468 (504)
||.-+++|+.| ++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 99999999999 99994
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=277.63 Aligned_cols=267 Identities=21% Similarity=0.407 Sum_probs=250.2
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+|..+|+.+-|+|+-.++++++.|++|++||..++++...++||.+.|.+++|+..|+++++++.|=.+++||..+.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~- 182 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF- 182 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
+.+++.+.+|...|.++.|-|.|++|++++.|.+|+.|++.++.+++++. +|...|..++.+.||.++++++.|
T Consensus 183 -~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-----~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 183 -FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-----GHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred -HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-----CchHhEEEEEecCCeeEEEecCCC
Confidence 57888888999999999999999999999999999999999999999987 778899999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC---------------CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCC
Q 010669 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN---------------GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---------------g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~ 442 (504)
.+|++|-+.++++...+..|..+|.|++|.|. |.++++++.|+ |++||+.++.++.++.+| .
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh--d 334 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH--D 334 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc--c
Confidence 99999999999999999999999999999762 35899999998 999999999999999887 6
Q ss_pred CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 443 ~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
..|..++|+|.|+||+++.+| +++||+ ++.+++++++.| +..|++++|..+-
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl----~~~~cmk~~~ah--~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDL----KNLQCMKTLEAH--EHFVTSLDFHKTA 388 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEe----ccceeeeccCCC--cceeEEEecCCCC
Confidence 899999999999999999999 999999 889999999998 8899999987553
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=264.24 Aligned_cols=269 Identities=21% Similarity=0.347 Sum_probs=238.9
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC-CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
..+|++.|+.+.|+|+|.+|++||.|..|.+|++. ..+....+++|.++|..+.|.+|++.+++++.|.+|+.||++++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence 45789999999999999999999999999999954 44667788999999999999999999999999999999999997
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
++++.+++|.+.|+.+.-..-|. ++.+++.||++++||+++...++.+. ....++++.|..++..+.+|+
T Consensus 123 ---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 123 ---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred ---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc------cceeEEEEEecccccceeecc
Confidence 78899999999999998554444 67788999999999999988887774 235799999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----cceeeeecCCCCCC--eeEEE
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSETP--TNSVD 449 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----~~~~~~~~~~~~~~--v~~i~ 449 (504)
-|+.|++||++.+...+.+.||..+|+.+..+++|.++.+-+.|. +++||++-. +++..+..+.|... ...++
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999999999999999999999999999999999999999998 999999854 34666766655443 45789
Q ss_pred ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 450 ~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
|+|++.++.+|+.| +.+||. .....+..++|| .+.|.+++|.|.-.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~----~~r~~lyklpGh--~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDT----TSRRILYKLPGH--YGSVNEVDFHPTEPI 322 (338)
T ss_pred ccCCCCccccccccceEEEeec----ccccEEEEcCCc--ceeEEEeeecCCCcE
Confidence 99999999999999 999997 667899999999 999999999998654
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=253.09 Aligned_cols=257 Identities=25% Similarity=0.434 Sum_probs=223.7
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
.+.|+.+.+.|+++.||+++. ..|++||+.++. ++.++.+|+..|+++.|..+|+++++||.||+++|||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---
Confidence 567999999999999999885 579999998764 58999999999999999999999999999999999999873
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~ 380 (504)
.+.+.+ .|..+|+++..||+...|++|..+|.|++||+....+...+.. .....|.++...|||.+++.+...|.
T Consensus 116 ~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP----e~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 116 SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP----EDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC----CCCcceeeEEEcCCCcEEEEecCCcc
Confidence 444444 5779999999999999999999999999999999877766653 23367999999999999999999999
Q ss_pred EEEEEcCCC------ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cceeeeecCCCCCCeeEEEECC
Q 010669 381 VKIWDVKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 381 I~iwd~~~~------~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
.++|++-+. .++..|+.|.+.+..+.+||++++|++++.|. ++||+..+. +....+..+ ...++.++||.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~ 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSA 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeecc
Confidence 999998654 45677889999999999999999999999998 999999887 444444444 68999999999
Q ss_pred CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~ 496 (504)
||.||++|+.| .++|++ ..++.+..+.+| -....|++.
T Consensus 269 dg~YlvTassd~~~rlW~~----~~~k~v~qy~gh--~K~~vc~~l 308 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDL----SAGKEVRQYQGH--HKAAVCVAL 308 (311)
T ss_pred CccEEEecCCCCceeeccc----ccCceeeecCCc--ccccEEEEe
Confidence 99999999999 999999 778899999999 445555544
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-37 Score=280.23 Aligned_cols=265 Identities=21% Similarity=0.354 Sum_probs=231.7
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
.+-+|..+.|.|+|+.|++|+..|.+.+|+.........++.|..+|.++.|++++.++++|+.+|.|++|+... .
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----n 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM----N 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch----h
Confidence 456899999999999999999999999999755444455678999999999999999999999999999998765 3
Q ss_pred eeEEeccCC-cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669 302 CKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (504)
Q Consensus 302 ~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~ 380 (504)
.++.++.|. ..|++++|+|+...|++++.||+|+|||....+.-..+. +|.-.|.+++|||...++++|+.|..
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----GHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----cCCCCcceeccCCccceeEEccCCce
Confidence 444555554 899999999999999999999999999999887766665 77788999999999999999999999
Q ss_pred EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC-CCEEE
Q 010669 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLA 458 (504)
Q Consensus 381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~-g~~l~ 458 (504)
|++||.+++.++.++.+|...|..+.|++++.+|++++.|. +++||+|+.+.+..+..| ...++++.|+|- ..+|.
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeecccccccccee
Confidence 99999999999999999999999999999999999999998 999999999999988877 678999999995 56777
Q ss_pred EEeCc--EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEeecCccc
Q 010669 459 VASAD--IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 459 ~~~~d--i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~~g~~~ 503 (504)
+|+.| +..|.+. .-+.+..+ .+| ...|.++++.|.|-+.
T Consensus 324 sgg~Dgsvvh~~v~----~~~p~~~i~~AH--d~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVG----LEEPLGEIPPAH--DGEIWSLAYHPLGHIL 365 (464)
T ss_pred eccCCCceEEEecc----ccccccCCCccc--ccceeeeeccccceeE
Confidence 88888 8889883 23344433 344 8899999999999763
No 15
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=100.00 E-value=2.6e-38 Score=214.73 Aligned_cols=70 Identities=70% Similarity=1.022 Sum_probs=68.2
Q ss_pred CCCCChhhHHHhhhhhhHHHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHh
Q 010669 64 LTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 133 (504)
Q Consensus 64 ~~~~sip~ll~~~q~Ewda~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~ 133 (504)
|+++|||+||++|||||||+|||+|+|||||+++|||||+||||+|||||||||++||||++|++|++++
T Consensus 1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999998764
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.3e-36 Score=293.98 Aligned_cols=206 Identities=28% Similarity=0.483 Sum_probs=197.4
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
...+|.++|..+.|+|+.++|++++.|+++++|.+.+..++-.++||..+|+++.|+|.|-+++|||.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
.+.+.+.+|-+.|.|+.|||+.+|+++||.|.+|++||+.+|..++.+. +|..+|++++|+|+|++|++|+.
T Consensus 526 ---~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 526 ---KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred ---CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----CCCCceEEEEEcCCCceEeeccc
Confidence 7788889999999999999999999999999999999999999999886 79999999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 431 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~ 431 (504)
||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++|+.|. |++||+.+..
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999999999999999999999999998 9999987644
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=291.98 Aligned_cols=272 Identities=27% Similarity=0.471 Sum_probs=240.4
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
+...+...|.++.|+++|+.+++++.++.+++|+....+ ....+.+|...|.+++|+|++.++++++.|++|+|||+.
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 344557899999999999999999999999999997777 777788999999999999999999999999999999994
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
..+ .+++++.+|...|++++|+|+++.+++|+.|++|++||++++++...+. +|...|++++|+++|++|+++
T Consensus 234 ~~~--~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-----~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 234 DDG--RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-----GHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred CCC--eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-----ccCCceEEEEECCCCCEEEEc
Confidence 432 7888999999999999999999999999999999999999999998887 788899999999999999999
Q ss_pred eCCCcEEEEEcCCCc--eeeeeeCCCCC--eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCC-CCeeEEE
Q 010669 376 TSEALVKIWDVKSQA--NVAKFDGHVGA--VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE-TPTNSVD 449 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~--~~~~~~~~~~~--i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~-~~v~~i~ 449 (504)
+.||.|++||+.++. ++..+.++... ++++.|+|+|.++++++.|+ +++||++.+.....+..+... ..+.+..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 999999999999998 56777766555 99999999999999999998 999999999999988887543 2455666
Q ss_pred ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 450 ~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+++.+.++++|+.| |.+|++ .+...+..+.+|. ...+..+++.+...
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~----~s~~~~~~l~~h~-~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDS----SSGGILQRLEGHS-KAAVSDLSSHPTEN 435 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeC----CccchhhhhcCCC-CCceeccccCCCcC
Confidence 68899999999999 999998 6678888888884 56667777666543
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-35 Score=269.30 Aligned_cols=260 Identities=25% Similarity=0.446 Sum_probs=237.6
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
...|++++|+.+|.+||+|+.||.+++|+.. |..+.++..|.++|.++.|+.+|++|++++.||++.+||..++ ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---TV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---eE
Confidence 3579999999999999999999999999964 7888999999999999999999999999999999999999886 66
Q ss_pred eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 382 (504)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~ 382 (504)
...+.-|..+-.++.|- +...|++++.||.|+++.+....++.++. +|...|.++.|+|.|.+|++++.|++++
T Consensus 311 ~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred EEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeee-----cccCceEEEEECCCCceEEEecCCCeeE
Confidence 77777888887888887 56689999999999999999988888886 7889999999999999999999999999
Q ss_pred EEEcCCCceeeeeeCCCCCeEEEEEcCCC---------cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 383 IWDVKSQANVAKFDGHVGAVTAISFSENG---------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~g---------~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
||++........+..|...|..+.|+|.| ..+++++.|+ |++||+..+.++..+..| ..+|.+++|+|
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~ 462 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSP 462 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecC
Confidence 99999999999999999999999999953 5788899998 999999999999998765 78999999999
Q ss_pred CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+|+|+|+|+.| |.+|+. +.++.++.+.+ ++.|..++|...|-
T Consensus 463 ~g~ylAsGs~dg~V~iws~----~~~~l~~s~~~---~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWST----KTGKLVKSYQG---TGGIFELCWNAAGD 506 (524)
T ss_pred CCcEEEecCCCCeeEeccc----cchheeEeecC---CCeEEEEEEcCCCC
Confidence 99999999999 999998 88999999987 67799999988773
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=259.88 Aligned_cols=272 Identities=19% Similarity=0.311 Sum_probs=237.9
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
.+..+|.+-|.|+++.|.+.++++|+.|++++|||+.+|++..++.||...|..+++|+-..|+++++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
. +.++.+.+|-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+. +|...|..+.+.|-...+++|+
T Consensus 225 n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 225 N---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----GHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred h---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----CCCCcceeEEeecCCCceEEec
Confidence 6 7788888999999999999999999999999999999999999888886 8899999999999777899999
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
.|++|++||++.++....+..|...|.+++.+|....+++++.|.|+-|++..+..+..+..+ ..-+++++...|| +
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-V 373 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccc--cceeeeeeeccCc-e
Confidence 999999999999999999999999999999999999999999999999999999988887665 6788999987765 5
Q ss_pred EEEEeCc--EEEEEeeccCccceeEEEccCC---CCCCceeEEEEeecC
Q 010669 457 LAVASAD--IRVYQVASVKADWNCIKTFPDL---SGTGAASFLFLFVLG 500 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h---~~~~~v~~l~~~~~g 500 (504)
+++|+++ +.+||+.++ .+++..++..+- ..+..|.+.+|-..|
T Consensus 374 ~~~G~dng~~~fwdwksg-~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSG-HNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred EEEcCCceEEEEEecCcC-cccccccccccCCccccccceeEEeecccC
Confidence 6667766 999998443 233333222221 124556666666555
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-34 Score=242.45 Aligned_cols=264 Identities=18% Similarity=0.304 Sum_probs=234.3
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
+...++++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
+..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. +++.+. .....|.++... +..+++|
T Consensus 92 ---kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-----ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 92 ---KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-----EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-----hhcCceeEEEec--ccEEEee
Confidence 7889999999999999999999999999999999999998653 444443 334568887776 5679999
Q ss_pred eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g 454 (504)
+.||+++.||+|.|+....+.+| +|++++|+++|+..+.++-|+ +++.|-.+++.+..+.+|.....-...++....
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 99999999999999887777655 899999999999999999998 999999999999999998776677788899999
Q ss_pred CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCc-eeEEEEeec
Q 010669 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGA-ASFLFLFVL 499 (504)
Q Consensus 455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~-v~~l~~~~~ 499 (504)
..+++|++| +.+||+ -....+..++.| ... |+++++.|.
T Consensus 240 thV~sgSEDG~Vy~wdL----vd~~~~sk~~~~--~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDL----VDETQISKLSVV--STVIVTDLSCHPT 281 (307)
T ss_pred eeEEeccCCceEEEEEe----ccceeeeeeccC--CceeEEeeecccC
Confidence 999999999 999999 667788888776 333 788877764
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=241.80 Aligned_cols=252 Identities=16% Similarity=0.268 Sum_probs=219.9
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEE
Q 010669 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA 315 (504)
Q Consensus 236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 315 (504)
-+|+++|.|-+|++|...+|.+.++++...+.|+.+...|+++.|++++. -.||+||+.+.. ..++.++.+|+..|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-p~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-PNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-CCceeEEeccCCceEE
Confidence 48899999999999999999999999988889999999999999998876 479999999854 3588999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 010669 316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395 (504)
Q Consensus 316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~ 395 (504)
+.|+.+|+.+++||+||+++|||++...+.+.+ .+..+|+++..||+...|++|..+|.|++||++...+...+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 999999999999999999999999996665555 45589999999999999999999999999999988776666
Q ss_pred eC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc------eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EE
Q 010669 396 DG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR 465 (504)
Q Consensus 396 ~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~------~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~ 465 (504)
.. ...+|.++...|||.+|+.+...| .++|++-.... +..+..+ .+.+..+.+||+++||+++|.| ++
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEE
Confidence 43 345899999999999999999888 99999876432 3334443 7789999999999999999999 99
Q ss_pred EEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 466 VYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 466 vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
||+.+. -.+....+.+| ...+...+|+.+|+.
T Consensus 241 iwn~~~---~~kle~~l~gh--~rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 241 IWNTDD---FFKLELVLTGH--QRWVWDCAFSADGEY 272 (311)
T ss_pred EEecCC---ceeeEEEeecC--CceEEeeeeccCccE
Confidence 999832 24777888898 899999999999974
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-33 Score=262.50 Aligned_cols=280 Identities=21% Similarity=0.290 Sum_probs=226.8
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc---cCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~ 294 (504)
-++.|..-|.|+.|+|||+++++++.||++.+||=.+|+.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 356688899999999999999999999999999999999999997 89999999999999999999999999999996
Q ss_pred CCCC----------------------------------------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeE
Q 010669 295 SEDG----------------------------------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 334 (504)
Q Consensus 295 ~~~~----------------------------------------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i 334 (504)
.+.. .......+.+|...|+++..+|++++|++|+.||.|
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 5421 012345577899999999999999999999999999
Q ss_pred EEEECCCCeEEEE-----------eecCC----------------------CCC--------------------------
Q 010669 335 CFYDLSSGICLTQ-----------VSDAG----------------------TDG-------------------------- 355 (504)
Q Consensus 335 ~iwd~~~~~~~~~-----------~~~~~----------------------~~~-------------------------- 355 (504)
.-||..++..-.. +.... ...
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 9999976533211 00000 000
Q ss_pred -----------------CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669 356 -----------------RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLAT 416 (504)
Q Consensus 356 -----------------~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s 416 (504)
-.....+++++|++..+++|+.||.|+||.+..+.. ......|.++|++++||||+.||++
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 001235889999999999999999999999977553 3345669999999999999999999
Q ss_pred EeCCc-EEEEEcCCCcce-eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669 417 AAHDG-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAAS 492 (504)
Q Consensus 417 ~~~d~-v~vwd~~~~~~~-~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~ 492 (504)
+...+ |.+||+.+.... ..+..| ...|.+++|+|+...+|+|+-| |.||++.. ..+.+.....| ...|+
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~FH--takI~~~aWsP~n~~vATGSlDt~Viiysv~k---P~~~i~iknAH--~~gVn 577 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWAFH--TAKINCVAWSPNNKLVATGSLDTNVIIYSVKK---PAKHIIIKNAH--LGGVN 577 (603)
T ss_pred eccCCcEEEEEcccCceecceeeee--eeeEEEEEeCCCceEEEeccccceEEEEEccC---hhhheEecccc--ccCce
Confidence 99888 999999887652 223333 6899999999999999999999 99999954 34446666778 55599
Q ss_pred EEEEeecCcccC
Q 010669 493 FLFLFVLGQTCS 504 (504)
Q Consensus 493 ~l~~~~~g~~~s 504 (504)
.+.|..+..+.|
T Consensus 578 ~v~wlde~tvvS 589 (603)
T KOG0318|consen 578 SVAWLDESTVVS 589 (603)
T ss_pred eEEEecCceEEe
Confidence 999987765543
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=270.50 Aligned_cols=242 Identities=21% Similarity=0.372 Sum_probs=218.1
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
+...|.++|.++.|+++|.++++|+.+|.|++|+..- ..+..+..| ...|++++|+|+...|++++.||+|+|||...
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 6778999999999999999999999999999999763 445555554 48999999999999999999999999999877
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
. .....+.+|.-.|.+++|||....|+++|.|..|++||.+++.++..+. +|...|..+.|+|++++|++++
T Consensus 212 ~---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-----~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 212 P---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-----GHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred C---chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----hccceEEEEEEcCCCCeeEEcc
Confidence 5 5556678999999999999999999999999999999999999998876 7889999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g 454 (504)
.|..+++||+++.+.+..+++|...|+++.|+| +..+|.+|+.|+ |..|.+....++..+.. .|...|++++|+|-|
T Consensus 284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLG 362 (464)
T ss_pred CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccc
Confidence 999999999999999999999999999999999 677889999998 99999886566555543 457899999999999
Q ss_pred CEEEEEeCc--EEEEEe
Q 010669 455 SYLAVASAD--IRVYQV 469 (504)
Q Consensus 455 ~~l~~~~~d--i~vw~~ 469 (504)
.+|++|+.| +++|.-
T Consensus 363 hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTR 379 (464)
T ss_pred eeEeecCCCcceeeecc
Confidence 999999999 999975
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-32 Score=261.28 Aligned_cols=267 Identities=31% Similarity=0.565 Sum_probs=238.5
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
.+|..+|++++|+|++++|++++.||.+.+|++.+++....+..|...+..+.|+++++++++++.||.|++||+...
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 478899999999999999999999999999999988888888899999999999999999999999999999999875
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
.....+..|...+.++.|+++++++++++.||.+.+||+++++....+. .|...+.+++|+|++.++++++.+|
T Consensus 84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 4566677888899999999998899988889999999999888777665 5667899999999999999988899
Q ss_pred cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~ 458 (504)
.|++||+++++.+..+..|...+.++.|+|++..+++++.++ |++||+++++.+..+..+ ...+.++.|+|++.+++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEE
Confidence 999999999999989998988999999999998999988888 999999988887777544 56899999999999999
Q ss_pred EEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 459 ~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
+++.+ +++|++ ..+..+..+..| ...|.++.|+++|+.
T Consensus 236 ~~~~~~~i~i~~~----~~~~~~~~~~~~--~~~i~~~~~~~~~~~ 275 (289)
T cd00200 236 SGSEDGTIRVWDL----RTGECVQTLSGH--TNSVTSLAWSPDGKR 275 (289)
T ss_pred EEcCCCcEEEEEc----CCceeEEEcccc--CCcEEEEEECCCCCE
Confidence 88845 999998 567788888887 778999999998653
No 25
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-34 Score=252.01 Aligned_cols=298 Identities=20% Similarity=0.309 Sum_probs=243.8
Q ss_pred HHHHHHhhcccCCCCCCC----------ChhHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC
Q 010669 185 NAALSQQRKKRQVPPALA----------PIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS 254 (504)
Q Consensus 185 ~~~l~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 254 (504)
.++|.++.-+..+||... ....-++|+..-.+.+.-+.++.+-|..|+|||++|++|+.||.|.|||..+
T Consensus 165 GQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~ 244 (508)
T KOG0275|consen 165 GQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT 244 (508)
T ss_pred HHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhcc
Confidence 456777766666666422 1122244555555556667778899999999999999999999999999999
Q ss_pred CceEEEcc--------cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCCEE
Q 010669 255 GQIVTTLS--------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYF 325 (504)
Q Consensus 255 ~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l 325 (504)
|+..+.++ -+..+|.|+.|+.|...+++|+.||.|++|.+.++ .|++.+. .|+..|+|+.|+.|+..+
T Consensus 245 GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~Sqi 321 (508)
T KOG0275|consen 245 GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQI 321 (508)
T ss_pred chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcchh
Confidence 98765543 46789999999999999999999999999999997 7888886 899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC--CCCCeE
Q 010669 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--HVGAVT 403 (504)
Q Consensus 326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--~~~~i~ 403 (504)
++++.|.++++.-+.+|++++.+. +|.+.|+...|.+||+.+++++.||+|++|+.++.+++.+|+. ...+|+
T Consensus 322 LS~sfD~tvRiHGlKSGK~LKEfr-----GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vn 396 (508)
T KOG0275|consen 322 LSASFDQTVRIHGLKSGKCLKEFR-----GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVN 396 (508)
T ss_pred hcccccceEEEeccccchhHHHhc-----CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccce
Confidence 999999999999999999998887 8889999999999999999999999999999999999999874 445888
Q ss_pred EEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcccee
Q 010669 404 AISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC 478 (504)
Q Consensus 404 ~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~ 478 (504)
++..-| +...++++...+ |++.++. |+.++++.... ..+...+.+.+|.|.++++.++| ++.|.+ .++..
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~----~sG~L 471 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV----LSGKL 471 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe----ecCce
Confidence 888877 556777777666 9999885 77788876543 24566778899999999999999 555555 56777
Q ss_pred EEEccCCCCCCceeEEEEe
Q 010669 479 IKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 479 i~~~~~h~~~~~v~~l~~~ 497 (504)
..++..| +..|.++.-.
T Consensus 472 E~tl~Vh--EkdvIGl~HH 488 (508)
T KOG0275|consen 472 ERTLPVH--EKDVIGLTHH 488 (508)
T ss_pred eeeeecc--cccccccccC
Confidence 7777777 5555555433
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=239.18 Aligned_cols=274 Identities=22% Similarity=0.370 Sum_probs=225.2
Q ss_pred ccccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCC---ceEEEc-ccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669 217 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG---QIVTTL-SGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~---~~~~~~-~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i 291 (504)
....+|++.+..++|+|- |..||++|.|+.|++|+...+ .+...+ .+|+..|.+++|+|.|++|++||.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 346788899999999998 889999999999999998753 333334 379999999999999999999999999999
Q ss_pred EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
|.-.. +.++++.++.+|...|.+++|+++|++|++|+.|+.|-||.+..+........ +..|...|..+.|||...+
T Consensus 88 w~k~~-~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV--L~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 88 WKKED-GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV--LQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred eecCC-CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee--eccccccccEEEEcCCcce
Confidence 98654 67899999999999999999999999999999999999999985543322221 3378889999999999999
Q ss_pred EEEEeCCCcEEEEEcC---CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669 372 LGTGTSEALVKIWDVK---SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~ 447 (504)
|++++.|++|++|+-. ...++.++.+|.+.|.+++|+++|..|+++++|+ |+||-.... +. ..+...+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcccceEe
Confidence 9999999999999876 3468899999999999999999999999999998 999987621 21 123568899
Q ss_pred EEECCCCCEEEEEeCc--EEEEEeecc--CccceeEEEc-cCCCCCCceeEEEEee--cCccc
Q 010669 448 VDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTF-PDLSGTGAASFLFLFV--LGQTC 503 (504)
Q Consensus 448 i~~~~~g~~l~~~~~d--i~vw~~~~~--~~~~~~i~~~-~~h~~~~~v~~l~~~~--~g~~~ 503 (504)
+.|. ...|++++.| |++|.-... ...|+.+... ..| +..|.++.+.| .++++
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH--e~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH--EVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc--ccccceEEEcCCCCCcee
Confidence 9998 4567777777 999986431 2456666533 344 66999999999 45554
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=252.48 Aligned_cols=242 Identities=26% Similarity=0.498 Sum_probs=225.5
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
-.++|.+.|..+.|+..|+++++++.|-.+++||..+ .++++.+.+|...|.+++|-|.|+++++++.|.+|+.|++.+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 4678999999999999999999999999999999876 567888889999999999999999999999999999999998
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--------
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-------- 368 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd-------- 368 (504)
+ .++.++.+|...|..+..+.||.++++++.|.++++|-+.++.+...+. .|..+|.|++|-|.
T Consensus 225 g---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 225 G---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-----EHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred c---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-----ccccceEEEEecccccCcchhh
Confidence 7 8999999999999999999999999999999999999999998777766 67788999999763
Q ss_pred -------CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC
Q 010669 369 -------GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 440 (504)
Q Consensus 369 -------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~ 440 (504)
+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+ +++||+++.++...+..+
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah- 375 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH- 375 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-
Confidence 25899999999999999999999999999999999999999999999999998 999999999999999876
Q ss_pred CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 441 SETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 441 ~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
...++++.|+.+..|+++|+-| +++|.-
T Consensus 376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -cceeEEEecCCCCceEEeccccceeeeeec
Confidence 5689999999999999999999 999973
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-32 Score=253.20 Aligned_cols=240 Identities=25% Similarity=0.418 Sum_probs=219.4
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
....|++||.++.|+..|++|++++.||++.+||..++.....+.-|..+-..+.|-.+ ..+++++.||.|+|+.+...
T Consensus 271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC
Confidence 35569999999999999999999999999999999999999999999988788999754 46899999999999999876
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--------
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-------- 369 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-------- 369 (504)
.++.++.+|.++|.++.|+|.+.+|+++|.|++++||..........+. .|...|..+.|+|+|
T Consensus 350 ---~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 350 ---RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred ---CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-----hhccceeeEeecCCCCccCCCcC
Confidence 7888999999999999999999999999999999999988877776665 778889999999965
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669 370 -LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (504)
Q Consensus 370 -~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~ 447 (504)
..+++++.|++|++||+..+.++..|..|..+|++++|+|+|.++++|+.|+ |.+|+.++++.++.+.. ...|..
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ife 498 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFE 498 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEE
Confidence 4789999999999999999999999999999999999999999999999998 99999999999998876 467999
Q ss_pred EEECCCCCEEEEEeCc--EEEEEe
Q 010669 448 VDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 448 i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
++|+.+|.+|.++-.| +.+-|+
T Consensus 499 l~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 499 LCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EEEcCCCCEEEEEecCCCceEEEe
Confidence 9999999999888777 888876
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-32 Score=261.04 Aligned_cols=262 Identities=21% Similarity=0.328 Sum_probs=236.4
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
+.+.|.+++|+|....++++-.+|.|.|||.++...++.+.-..-+|.+..|-+..+++++|+.|..|+||+..+. .
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---e 88 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---E 88 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc---e
Confidence 6778999999999999999999999999999999999999988999999999999999999999999999999886 7
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCc
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEAL 380 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~ 380 (504)
.++.|..|.+.|.+++.||...+++++|+|-+|++||.+.+-...+.. .+|...|.+++|+| |.+.|++++-|++
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf----eGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF----EGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE----cCcceEEEEEEecCCCccceeeeecccc
Confidence 889999999999999999999999999999999999998765444332 28899999999999 8899999999999
Q ss_pred EEEEEcCCCceeeeeeCCCCCeEEEEEcCCC--cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENG--YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (504)
Q Consensus 381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l 457 (504)
|+||.+.+..+..++.+|...|+|+.|-+.| .+|++|++|. |+|||..+..+++++.+| ...|..+.|+|.-.++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVFFHPELPII 242 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEEecCCCcEE
Confidence 9999999999999999999999999999855 6999999998 999999999999999988 5689999999999999
Q ss_pred EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 458 ~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
++|++| ++||+- ++.+...++.-- -+.|.+++..+
T Consensus 243 isgsEDGTvriWhs----~Ty~lE~tLn~g--leRvW~I~~~k 279 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNS----KTYKLEKTLNYG--LERVWCIAAHK 279 (794)
T ss_pred EEecCCccEEEecC----cceehhhhhhcC--CceEEEEeecC
Confidence 999999 999996 666666666542 55666666443
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=261.23 Aligned_cols=273 Identities=16% Similarity=0.282 Sum_probs=235.4
Q ss_pred ccceeccccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcE
Q 010669 212 QLASHPLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (504)
Q Consensus 212 ~~~~~~~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i 289 (504)
+........+|..+|+++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|.+++|+.+|..++++|.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 3333445788999999999999 889999999999999999876 89999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669 290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (504)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd 368 (504)
++||++++ +++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+. .|-..|..+.|-++
T Consensus 283 KlwDtETG---~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-----~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 283 KLWDTETG---QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-----RHLGAILDITFVDE 353 (503)
T ss_pred eeeccccc---eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----hhhhheeeeEEccC
Confidence 99999997 6777664 34568999999998 899999999999999999999776664 55678999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC---CcceeeeecCCCCC
Q 010669 369 GLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK---LKNFRSFESSDSET 443 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~---~~~~~~~~~~~~~~ 443 (504)
|+.+++.+.|+.++||+.+.+.++.... .+.....++..+|++.+++.-+.|+ |.+|.+.. ....+.+.+|...+
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 9999999999999999999887665443 2334677899999999999999998 99998653 22334566665567
Q ss_pred CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
.-..+.|||||.+|++|+.+ +.+||+ ++-+.+..++.| +..++.+.+.|-
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdw----kt~kl~~~lkah--~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDW----KTTKLVSKLKAH--DQPCIGVDWHPV 485 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeec----hhhhhhhccccC--CcceEEEEecCC
Confidence 77889999999999999998 999999 888899999998 889999988874
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-33 Score=248.69 Aligned_cols=232 Identities=25% Similarity=0.419 Sum_probs=216.0
Q ss_pred ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (504)
Q Consensus 256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (504)
++.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++ +...++.+|...|..+++++-..|+++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 455677899999999999999999999999999999999997 78889999999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEE
Q 010669 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415 (504)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 415 (504)
.||++..+.+..+. +|-+.|.|++.+|.-..|++|+.|.+++|||+|+...+..+.||..+|.++.+.|-...++
T Consensus 219 CwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 99999998887775 7889999999999999999999999999999999999999999999999999999888899
Q ss_pred EEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeE
Q 010669 416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASF 493 (504)
Q Consensus 416 s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~ 493 (504)
+|+.|+ |++||++.++...++..+ ...+.+++.+|....+++++.| ++-|++ ..+..++.+.+| ++.|.+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~w~~----p~g~f~~nlsgh--~~iint 365 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQWKL----PEGEFLQNLSGH--NAIINT 365 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCccceeccC----Cccchhhccccc--cceeee
Confidence 999998 999999999988888766 6789999999999999999999 999999 788999999999 889999
Q ss_pred EEEeecCccc
Q 010669 494 LFLFVLGQTC 503 (504)
Q Consensus 494 l~~~~~g~~~ 503 (504)
+....||-..
T Consensus 366 l~~nsD~v~~ 375 (460)
T KOG0285|consen 366 LSVNSDGVLV 375 (460)
T ss_pred eeeccCceEE
Confidence 9998887543
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.6e-32 Score=270.57 Aligned_cols=243 Identities=26% Similarity=0.490 Sum_probs=217.6
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcC-CCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDR-PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
.+|...|.+++|+|+++++++++.|++|++||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+.++
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~- 278 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG- 278 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-
Confidence 678999999999999999999999999999999 556889999999999999999999999999999999999999985
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
.+...+.+|.+.|.+++|++++++|++++.|+.|++||+.++.. ...+.. ..... .+++++|+|++.++++++
T Consensus 279 --~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 279 --ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred --eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC--CCCCC-ceeEEEECCCCcEEEEec
Confidence 89999999999999999999999999999999999999999983 444432 11222 699999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCC---eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGA---VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~---i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
.|+.+++||++.+..+..+.+|... +.+..++++|.++++|+.|+ |++||+.++..+..+..+. ...+..+.|++
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~ 432 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHP 432 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCC
Confidence 9999999999999999999988774 44445677899999999998 9999999988888887764 57889999999
Q ss_pred CCCEEEEEe--Cc--EEEEEe
Q 010669 453 SGSYLAVAS--AD--IRVYQV 469 (504)
Q Consensus 453 ~g~~l~~~~--~d--i~vw~~ 469 (504)
..+++++++ .| +++|..
T Consensus 433 ~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 433 TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CcCeeeecCcCCCceEEEecC
Confidence 999999998 44 888875
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-31 Score=257.10 Aligned_cols=282 Identities=24% Similarity=0.391 Sum_probs=238.7
Q ss_pred hccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669 209 RYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSAD 286 (504)
Q Consensus 209 ~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~d 286 (504)
.|.+...+..+.+|...|+++.|+.|.++|++|+.|-.+++|++...+. ...+.+|.+.|.++-|..+...+++.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4666666777889999999999999999999999999999999876555 66778999999999999998899999999
Q ss_pred CcEEEEeCCC------------------------CC-----Cc-------------------------------------
Q 010669 287 KTVRVWQGSE------------------------DG-----NY------------------------------------- 300 (504)
Q Consensus 287 g~i~iwd~~~------------------------~~-----~~------------------------------------- 300 (504)
|.+.+|.... .. .+
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 9999997651 00 00
Q ss_pred -------ceeEEeccCCcCeEEEEEccCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 301 -------DCKHTLKDHTAEVQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 301 -------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
.+++.+.-...+|..+.|+..|+.|+.|+.. |.+-+|+.++...+.... +|...+++++++|||+++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-----gH~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-----GHSDRITSLAYSPDGQLI 365 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-----ccccceeeEEECCCCcEE
Confidence 0011111112345556666667777776553 788899988776555443 888999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
++|+.||.|+|||..++-++.+|..|.+.|+.+.|+.+|+.|++++-|| |+.||+...++.+++..+. .....+++.+
T Consensus 366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD 444 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVD 444 (893)
T ss_pred EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEc
Confidence 9999999999999999999999999999999999999999999999999 9999999999999998764 4567899999
Q ss_pred CCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 452 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 452 ~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
|.|..+.+|+.| |.||++ ++++.+..+.|| +++|.+++|.|.|..
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~----qTGqllDiLsGH--EgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSV----QTGQLLDILSGH--EGPVSGLSFSPDGSL 492 (893)
T ss_pred CCCCEEEeeccceEEEEEEEe----ecCeeeehhcCC--CCcceeeEEccccCe
Confidence 999999999998 999999 899999999999 999999999999875
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=239.89 Aligned_cols=267 Identities=21% Similarity=0.300 Sum_probs=226.3
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
.+..|+..|.+++.+|+.++++|||.|....+|+..+++....+.+|...|+++.|+.+|.+|+||+.+|.|+||...++
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
.....+...-..+.-+.|||.+..|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|||+.+++|..
T Consensus 139 ---~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 139 ---GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----GHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ---ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----CCCCCcccccccCCCceEEEEec
Confidence 3444444455778899999999999999999999999999976666665 78899999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeC------C---------------------------------------------CCCeEEEE
Q 010669 378 EALVKIWDVKSQANVAKFDG------H---------------------------------------------VGAVTAIS 406 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~------~---------------------------------------------~~~i~~l~ 406 (504)
||+|++||++++.++..+.. + ...+.|+.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988766541 0 00111222
Q ss_pred E---cCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEE
Q 010669 407 F---SENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK 480 (504)
Q Consensus 407 ~---s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~ 480 (504)
| +..=.+.|+|+-|| |.|||+.+.+....... ...|..+.|.+ ..||++++.+ |+.||. ++++++.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~v~~wDa----RtG~l~~ 362 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGKVRQWDA----RTGQLKF 362 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchheeeccCceEEeeec----cccceEE
Confidence 2 22334678888898 99999988766544432 56799999999 7888888888 999998 8999999
Q ss_pred EccCCCCCCceeEEEEeecCcc
Q 010669 481 TFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 481 ~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
++.|| ...|.+++++|+++.
T Consensus 363 ~y~GH--~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 363 TYTGH--QMGILDFALSPQKRL 382 (399)
T ss_pred EEecC--chheeEEEEcCCCcE
Confidence 99999 899999999998753
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-31 Score=257.89 Aligned_cols=263 Identities=18% Similarity=0.352 Sum_probs=237.6
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC-CcEEEEeCCCCCCcc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSEDGNYD 301 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~ 301 (504)
...|+|.+|++..+.|++|-..|...+|.+....++..+.-...+|..++|+..|++|+.|+.. |.+-||++... .
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---s 341 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---S 341 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---c
Confidence 4789999999999999999999999999999999999998777899999999999999988754 89999999885 5
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
-+...++|...+++++++|||+++++|+.||.|++||..++-|..++. .|.+.|+.+.|+..|+.+++.+-||+|
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeE
Confidence 566678999999999999999999999999999999999999999987 778999999999999999999999999
Q ss_pred EEEEcCCCceeeeeeCC-CCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669 382 KIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~ 458 (504)
+.||+...+..++|... .....|++..|.|..+++|+.|. |.+|++.+|+.+-.+.+| .++|.+++|+|+|..|+
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH--EgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH--EGPVSGLSFSPDGSLLA 494 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC--CCcceeeEEccccCeEE
Confidence 99999999999888753 34678999999999999999997 999999999999999887 78999999999999999
Q ss_pred EEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 459 ~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+++.| |++|++-. .+..+.++.- ...|+++.|.|+|+
T Consensus 495 S~SWDkTVRiW~if~---s~~~vEtl~i---~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFS---SSGTVETLEI---RSDVLAVSFRPDGK 533 (893)
T ss_pred eccccceEEEEEeec---cCceeeeEee---ccceeEEEEcCCCC
Confidence 99999 99999843 3455566643 56799999999985
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-31 Score=241.06 Aligned_cols=270 Identities=17% Similarity=0.245 Sum_probs=228.8
Q ss_pred eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (504)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw 292 (504)
.++...|.+.|..+.||++|++||+++.|.+..+|.+... +...++.+|..+|..+.||||.++|++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 3466789999999999999999999999999999986543 4578889999999999999999999999999999999
Q ss_pred eCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669 293 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 293 d~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
|+.++ .+.+.+. +|...+.+++|.|||..+++|+.|++|..||++... ...... .....|.+++..+||++
T Consensus 297 Dv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g----vr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 297 DVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG----VRDPKVHDLAITYDGKY 368 (519)
T ss_pred cCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc----cccceeEEEEEcCCCcE
Confidence 99986 3444332 355789999999999999999999999999998653 333321 12246999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~ 450 (504)
+++.+.|..|++|+..+......+. ...+|++++.|.||+++++.-.+. +.+||+...+.++.+.++.....+..-+|
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 9999999999999987765554443 446899999999999999888886 99999999899999998876667777777
Q ss_pred CC-CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 451 DH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 451 ~~-~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
-. +..++++|++| |+||+. .+++++..++|| ...|.++++.|..
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr----~sgkll~~LsGH--s~~vNcVswNP~~ 494 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHR----ISGKLLAVLSGH--SKTVNCVSWNPAD 494 (519)
T ss_pred CCCCcceEEecCCCceEEEEEc----cCCceeEeecCC--cceeeEEecCCCC
Confidence 65 44899999999 999997 889999999999 8899999998865
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.4e-30 Score=276.68 Aligned_cols=269 Identities=18% Similarity=0.283 Sum_probs=217.0
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----c----eEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEE
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----Q----IVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRV 291 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~----~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~i 291 (504)
.|...|.+++|+|+|++|++|+.||.|+||+.... . ....+. +...|.+++|++ ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 37889999999999999999999999999997531 1 122333 346799999987 5789999999999999
Q ss_pred EeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC-CCC
Q 010669 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PDG 369 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pdg 369 (504)
||+.++ ..+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++..+..+.. ...+.++.|+ ++|
T Consensus 560 Wd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g 630 (793)
T PLN00181 560 WDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANICCVQFPSESG 630 (793)
T ss_pred EECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCeEEEEEeCCCC
Confidence 999875 66778889999999999997 788999999999999999999988777642 2468999995 479
Q ss_pred CEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC------cceeeeecCCC
Q 010669 370 LILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL------KNFRSFESSDS 441 (504)
Q Consensus 370 ~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~------~~~~~~~~~~~ 441 (504)
.+|++|+.||.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|+ |++||++.. ..+..+..+
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-- 707 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-- 707 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--
Confidence 999999999999999998865 567788999999999997 778899999998 999999853 455666554
Q ss_pred CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce-------eEEEccCCCCCCceeEEEEeecCcc
Q 010669 442 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-------CIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 442 ~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~-------~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
...+..++|++++.+|++|+.| +++|+.......+. .+..+..+.+...|.+++|+++|..
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 5688999999999999999988 99999633211111 1111111112567999999998865
No 38
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=9.7e-32 Score=245.18 Aligned_cols=268 Identities=24% Similarity=0.345 Sum_probs=231.7
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
....|.+.+..+.|-++...|++|+.|..|++|++..++ .+.++.+..+.|+.+.|.+++..+++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 456789999999999999999999999999999987665 678888999999999999999999999999999999998
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
.. +...++.+|++.|+++.|......+++|+.|.+|++||+....+...+... +.+..++.+ +..+++|
T Consensus 250 ~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 250 SL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------SQCNDIVCS--ISDVISG 318 (459)
T ss_pred ch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc------ccccceEec--ceeeeec
Confidence 75 788899999999999999877777999999999999999998888777532 334445554 6679999
Q ss_pred eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC--CCCCeeEEEECC
Q 010669 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD--SETPTNSVDFDH 452 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~--~~~~v~~i~~~~ 452 (504)
..|+.|++||.++..+......+. .|+++..+++|..|.+++.|. +.++|+++......+.... .....+.+.|+|
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 999999999999999999988664 999999999999999998887 9999999988877776532 234588999999
Q ss_pred CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
++.|+++||.| ++||++ .++++...+..-.....|+++.|.+.|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v----~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSV----FTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred CCceeeeccCCCcEEEEEc----cCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 99999999999 999999 6777777776652234699999999885
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=250.08 Aligned_cols=276 Identities=20% Similarity=0.329 Sum_probs=229.3
Q ss_pred hhccccceeccccCCCCCeEEEEeccCCCE-EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669 208 ERYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD 286 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d 286 (504)
..|.+....+.++. .+.|.+++|+|...+ +|+.+ .-.+.+|+..+....+++......|.++.|..||++|++|...
T Consensus 12 ~~w~~~~~~~~~ke-~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 12 RYWRQETFPPVHKE-HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred hhhhhhcccccccc-cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCc
Confidence 33444444444443 478999999997653 34433 3469999998888888787788899999999999999999999
Q ss_pred CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 365 (504)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 365 (504)
|.|+|||+.+. ..+..+.+|+.+|..+.|+|.+ ..+++|++|+.+++||+.+......+ .+|...|.|.+|
T Consensus 90 G~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~ 161 (487)
T KOG0310|consen 90 GHVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDI 161 (487)
T ss_pred CcEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeecc
Confidence 99999996653 4567788999999999999965 57788889999999999998853333 388999999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCC
Q 010669 366 HP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET 443 (504)
Q Consensus 366 ~p-dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~ 443 (504)
+| ++.++++|+.||.|++||++.. ..+.++. |..+|..+.|-|.|..+++++.+.|++||+.+|......... |..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~-H~K 239 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN-HNK 239 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc-ccc
Confidence 99 6779999999999999999987 5666666 889999999999999999999888999999966544433332 368
Q ss_pred CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.|+|+.+..++..|++|+-| +++|++ .+++.+..+.- .++|.+++++|++++
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~----t~~Kvv~s~~~---~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDT----TNYKVVHSWKY---PGPVLSIAVSPDDQT 293 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEc----cceEEEEeeec---ccceeeEEecCCCce
Confidence 99999999999999999999 999998 78999999865 789999999998875
No 40
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=235.96 Aligned_cols=268 Identities=25% Similarity=0.440 Sum_probs=228.7
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe---
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ--- 293 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd--- 293 (504)
..+.+|+++|+.++.......+.+++.|.+.+||.++++.++.++.||.+.|++++|++.+.++++++.|++-.||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 35789999999999988888999999999999999999999999999999999999999999999999999999996
Q ss_pred ---CCC-----------------------------CC--CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669 294 ---GSE-----------------------------DG--NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (504)
Q Consensus 294 ---~~~-----------------------------~~--~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (504)
+.. ++ ...++..+.+|.+.|.+..|...|+.+++++.|.+-.+||+
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV 301 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence 111 00 01234567799999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA 418 (504)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~ 418 (504)
+++..+..+. +|....+.++-||..+++++.+.|.+.++||++.. ..+..|.||...|+++.|..+ ..+++|+
T Consensus 302 Etge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgS 375 (481)
T KOG0300|consen 302 ETGEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGS 375 (481)
T ss_pred ccCceecccc-----CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecC
Confidence 9999988876 88899999999999999999999999999999854 457789999999999999854 5688999
Q ss_pred CCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc-----CCCCCC
Q 010669 419 HDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP-----DLSGTG 489 (504)
Q Consensus 419 ~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~-----~h~~~~ 489 (504)
+|. |++||+++.+ ++.++.. ..+++.++.+..+.+++.--++ |++||+ ++..+..++ +| .-
T Consensus 376 DDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDl-----nG~RlaRlPrtsRqgH--rR 445 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDL-----NGNRLARLPRTSRQGH--RR 445 (481)
T ss_pred CCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEec-----CCCccccCCccccccc--ce
Confidence 997 9999999875 4566655 5789999999988898888777 999998 344444443 66 66
Q ss_pred ceeEEEEeecC
Q 010669 490 AASFLFLFVLG 500 (504)
Q Consensus 490 ~v~~l~~~~~g 500 (504)
-|+|.++..+-
T Consensus 446 MV~c~AW~eeh 456 (481)
T KOG0300|consen 446 MVTCCAWLEEH 456 (481)
T ss_pred eeeeeeccccC
Confidence 78888776543
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-32 Score=266.49 Aligned_cols=243 Identities=20% Similarity=0.362 Sum_probs=203.7
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--------------------------------C----------
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--------------------------------G---------- 255 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--------------------------------~---------- 255 (504)
+...|.+.|+++.||+||+|||+||.||.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 4458999999999999999999999999999998654 0
Q ss_pred ------------------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669 256 ------------------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (504)
Q Consensus 256 ------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (504)
+++..|.||.+.|.++.|+. .++|++++.|.+|++|++... .|+..| .|.+.|+|++
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVA 416 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEE
Confidence 12334668999999999996 458999999999999999875 788877 5999999999
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 010669 318 VHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396 (504)
Q Consensus 318 ~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~ 396 (504)
|+| |.+||++|+-||.|+||++...+.+..... ..-|++++|.|||+..++|+.+|.+++|+....+....+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhh------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 999 778999999999999999998876655432 2579999999999999999999999999998877655442
Q ss_pred C--C------CCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--E
Q 010669 397 G--H------VGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I 464 (504)
Q Consensus 397 ~--~------~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i 464 (504)
- | ...|+.+.|.|.. ..|++.+.|. |+|||++....+..+++......-....|+.||++|+++++| |
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 1 2279999999843 3455556666 999999999999999887666667788999999999999998 9
Q ss_pred EEEEeec
Q 010669 465 RVYQVAS 471 (504)
Q Consensus 465 ~vw~~~~ 471 (504)
+||++..
T Consensus 571 YiW~~~~ 577 (712)
T KOG0283|consen 571 YIWKNDS 577 (712)
T ss_pred EEEeCCC
Confidence 9999743
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=264.93 Aligned_cols=265 Identities=23% Similarity=0.346 Sum_probs=232.4
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
..+.|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..++|+|+..++++||.|-.|+||+..+. +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---r 84 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---R 84 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---e
Confidence 3557889999999999999999999999999999999999999999999999999999999999999999999886 8
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
|+.++.+|-+.|..+.||+.-.+|+++|+|.+|+||+..+++++..+. +|...|.|..|||...++++++-|.+|
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-----GHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-----GHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-----cCceEEEeeccCCccceEEEecccceE
Confidence 999999999999999999999999999999999999999999999987 888999999999999999999999999
Q ss_pred EEEEcCCCc-----------------------------eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669 382 KIWDVKSQA-----------------------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 431 (504)
Q Consensus 382 ~iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~ 431 (504)
||||+..-+ ..+.+.||...|+-++|+|.-.++++|++|. |++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 999984210 0134578999999999999999999999998 9999998665
Q ss_pred ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 432 ~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
....-....|.+.|.++-|+|....+++.|+| |+|||+ ...+.+++|+-- ++.-..++..|..
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm----~kRt~v~tfrre--ndRFW~laahP~l 304 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM----TKRTSVQTFRRE--NDRFWILAAHPEL 304 (1202)
T ss_pred ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec----ccccceeeeecc--CCeEEEEEecCCc
Confidence 44333334457899999999999999999999 999999 556677777543 4566666665543
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-31 Score=229.40 Aligned_cols=271 Identities=17% Similarity=0.255 Sum_probs=229.2
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+|..+++-+.|+.+|++|++++.|.+..||-..+|+.+.++.+|++.|+|+....+.+.+++|+.|.++++||++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG- 84 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG- 84 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-
Confidence 5679999999999999999999999999999998899999999999999999999999999999999999999999997
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeC-----CCeEEEEECCC-------CeEEEEeecCCCCCCCCCeEEEEEC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS-------GICLTQVSDAGTDGRPEGYTSAAFH 366 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (504)
+++..+. ...+|..+.|+++|++++.++. .+.|.++|++. ..+...+. .+.+.++.+-|.
T Consensus 85 --k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~skit~a~Wg 156 (327)
T KOG0643|consen 85 --KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKITSALWG 156 (327)
T ss_pred --cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----CCccceeeeeec
Confidence 6666664 4578999999999999888765 46799999983 33444443 345789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669 367 PDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 367 pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
|-+.+|++|..||.|.+||+++++. +.....|...|+.+.|+++..++++++.|. -++||+++...++++.. ..+
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t---e~P 233 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT---ERP 233 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee---ccc
Confidence 9999999999999999999999854 555577999999999999999999999998 99999999999999987 578
Q ss_pred eeEEEECCCCCEEEEEeCc----EEEEEeeccC--------ccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669 445 TNSVDFDHSGSYLAVASAD----IRVYQVASVK--------ADWNCIKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 445 v~~i~~~~~g~~l~~~~~d----i~vw~~~~~~--------~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
+++.+++|-..+++.|+.. |.-=.-..++ -.-+.+..+++| -++|.+++|.|+|+-.
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksY 302 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSY 302 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCccc
Confidence 9999999988877776554 2221110000 112467788999 8999999999999753
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=225.77 Aligned_cols=240 Identities=24% Similarity=0.403 Sum_probs=204.2
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
+-.+|+..|.+++|+|.|++|++|+.|.++.||.-..+ +++.++.||...|.|++|+++|++|++++.|+.|-||.+.
T Consensus 56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 45689999999999999999999999999999986644 6789999999999999999999999999999999999999
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-C--CeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-S--GICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
.+..+.+...++.|+..|..+.|||...+|+++|.|.+|++|+-. . -.+...+. +|...|.+++|++.|..|
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-----g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-----GHENTVWSLAFDNIGSRL 210 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-----CccceEEEEEecCCCceE
Confidence 888899999999999999999999999999999999999999876 2 23455554 777899999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc------ceeeeecCCCCCCe
Q 010669 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK------NFRSFESSDSETPT 445 (504)
Q Consensus 373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~------~~~~~~~~~~~~~v 445 (504)
++++.|++|+||-..+.- -..|..+++.+.|. ...|++++.|+ |++|.-...- .+... ...|...|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dV 283 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDV 283 (312)
T ss_pred EEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hccccccc
Confidence 999999999999865321 12377899999998 44788888887 9999765421 11111 12346689
Q ss_pred eEEEECCC-CCEEEEEeCc--EEEEEe
Q 010669 446 NSVDFDHS-GSYLAVASAD--IRVYQV 469 (504)
Q Consensus 446 ~~i~~~~~-g~~l~~~~~d--i~vw~~ 469 (504)
+++.|+|. .+.|++|++| +++|.+
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99999995 6889999998 999987
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.1e-33 Score=246.79 Aligned_cols=255 Identities=22% Similarity=0.406 Sum_probs=219.8
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
...+|+|+.+. ...+++|..|++|+|||..+..+...+.||++.|.|+.| +.+.+++|+.|.+|+|||++++ +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg---e 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG---E 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC---c
Confidence 35689999875 667999999999999999999999999999999999999 6679999999999999999997 7
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
++.++.+|...|..+.|+ +.++++++.|.++.+||+.....+.... ...+|...|+.+.|+. +++++++.|.+|
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr--VLvGHrAaVNvVdfd~--kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDD--KYIVSASGDRTI 342 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH--HHhhhhhheeeecccc--ceEEEecCCceE
Confidence 888889999999999996 6799999999999999998765321111 1337888999999974 599999999999
Q ss_pred EEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE
Q 010669 382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~ 460 (504)
++|++.+++.+.++.+|...|.|+.+ +|+++++|+.|. |++||+..|.+++.+.+| ..-|.++.|+ .+.+++|
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD--NKRIVSG 416 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--Cceeeec
Confidence 99999999999999999999999998 899999999998 999999999999999887 6789999995 5789999
Q ss_pred eCc--EEEEEeeccCcc-----ceeEEEccCCCCCCceeEEEEe
Q 010669 461 SAD--IRVYQVASVKAD-----WNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 461 ~~d--i~vw~~~~~~~~-----~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
+.| |+|||+...-.. --|+.++..| .+.|..++|-
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~h--sgRVFrLQFD 458 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVFRLQFD 458 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhc--cceeEEEeec
Confidence 999 999999654322 2256666677 7788777764
No 46
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=9.4e-30 Score=255.17 Aligned_cols=266 Identities=19% Similarity=0.234 Sum_probs=202.8
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE-------------EEcccCccceeEEEEee-CCCEEEEEeCCCcE
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-------------TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTV 289 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~-------------~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i 289 (504)
..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.||+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34555556666666666666666666664433221 24678999999999999 88899999999999
Q ss_pred EEEeCCCCCC----cceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669 290 RVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (504)
Q Consensus 290 ~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (504)
++||+...+. ...+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+. +|...|.+++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-----~h~~~V~sla 175 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-----CHSDQITSLE 175 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-----CCCCceEEEE
Confidence 9999976421 13566788999999999999985 699999999999999999998777664 5677899999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCC-eEEEEEcCCCcEEEEEe----CCc-EEEEEcCCCcceeeeec
Q 010669 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSENGYYLATAA----HDG-VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 365 ~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~g~~l~s~~----~d~-v~vwd~~~~~~~~~~~~ 438 (504)
|+|+|.+|++|+.||.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+ |++||+++.........
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 9999999999999999999999999999999888764 45778999877777654 356 99999998654333222
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 439 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 439 ~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
......+....|++++++|++++. | |++|++. +...+..+... ...++.+++|.|.
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~----~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM----NERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee----CCceEEEeecc-CCCCCcceEeccc
Confidence 222345667789999999998874 5 9999994 34444443322 2456777777764
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-31 Score=258.05 Aligned_cols=245 Identities=25% Similarity=0.430 Sum_probs=219.1
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEE
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRV 291 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~i 291 (504)
.+..+|...|.+++...+|.+|++|+.|.++++|.++++ -++....+|+..|.+++++..+ .+|+++|.|+++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 378899999999997778899999999999999987443 3455677999999999997644 58999999999999
Q ss_pred EeCCCCCC------cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669 292 WQGSEDGN------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 365 (504)
Q Consensus 292 wd~~~~~~------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 365 (504)
|++..... +.+..+...|...|++++++|+.+.|++||.|++.++|+++.......+. +|..++.|+.|
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-----GH~RGvw~V~F 513 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-----GHTRGVWCVSF 513 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-----CCccceEEEEe
Confidence 99876221 11122345799999999999999999999999999999999888888776 88999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669 366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
+|..+++++++.|++|+||.+.+..++.+|.||...|..+.|-.+|..|++++.|| |++|++.+..+..++..| ...
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H--~Dr 591 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH--NDR 591 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc--cce
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999987 789
Q ss_pred eeEEEECCCCCEEEEEeCc--EEEEE
Q 010669 445 TNSVDFDHSGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 445 v~~i~~~~~g~~l~~~~~d--i~vw~ 468 (504)
|++++.++.+.++++|+.| +.+|.
T Consensus 592 vWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 592 VWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999 88885
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=5e-31 Score=256.53 Aligned_cols=272 Identities=24% Similarity=0.389 Sum_probs=235.1
Q ss_pred CCCCCeEEEEe-ccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC-C
Q 010669 221 TSKPGIVSLDI-HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-G 298 (504)
Q Consensus 221 ~~~~~I~~~~~-s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~-~ 298 (504)
+..+.|..++| .|+.++|++++..+.+++|+..+..+. .+.||+..|.++....+|.+|++|+.|.++++|.++.+ .
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 34567888885 567789999999999999998877665 88999999999996567889999999999999988443 2
Q ss_pred CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEE---ee-cCCCCCCCCCeEEEEECCCCCEEE
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQ---VS-DAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~---~~-~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
...++....+|+..|.+++++..+ .+|+++|.|+++++|++...+.... +. ......|...|+|++++|+.+++|
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 234566677999999999997654 5899999999999999987322111 10 001236788999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
+|+.|.+.+||++.......++.||...|.|+.|+++.+.|++++.|. |+||.+.+..+++++.+| ...|..+.|-.
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH--~~aVlra~F~~ 557 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH--TSAVLRASFIR 557 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc--cceeEeeeeee
Confidence 999999999999999999999999999999999999999999999998 999999999999999988 67999999999
Q ss_pred CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+|..|++++.| +++|++ ++..|+.+++.| ++.|.++...+.+-
T Consensus 558 ~~~qliS~~adGliKlWni----kt~eC~~tlD~H--~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNI----KTNECEMTLDAH--NDRVWALSVSPLLD 602 (775)
T ss_pred CCcEEEeccCCCcEEEEec----cchhhhhhhhhc--cceeEEEeecCccc
Confidence 99999999999 999999 889999999999 99999998887653
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1e-29 Score=238.50 Aligned_cols=277 Identities=21% Similarity=0.314 Sum_probs=227.0
Q ss_pred cccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
-..+|...|.+++|-|... ++++|+.|++|.+|+=.-.+...++..|..-|.|+.|+|||+++++++.||+|.+||-.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4567899999999999776 799999999999999776777788889999999999999999999999999999999888
Q ss_pred CCCcceeEEec---cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC---------------------
Q 010669 297 DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG--------------------- 352 (504)
Q Consensus 297 ~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------- 352 (504)
+ ..+..+. +|.+.|.+++|+||+..|++++.|.+++|||+.+.+++..+....
T Consensus 222 g---e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 222 G---EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred c---cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 6 5555555 899999999999999999999999999999998876665543211
Q ss_pred -----------------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-----------ee----------
Q 010669 353 -----------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-----------AK---------- 394 (504)
Q Consensus 353 -----------------~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~-----------~~---------- 394 (504)
..+|...|+++..+||+.+|++|+.||.|.-||..++..- ..
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 1478889999999999999999999999999998654211 00
Q ss_pred ----------e------------------------------------------eCC--------CCCeEEEEEcCCCcEE
Q 010669 395 ----------F------------------------------------------DGH--------VGAVTAISFSENGYYL 414 (504)
Q Consensus 395 ----------~------------------------------------------~~~--------~~~i~~l~~s~~g~~l 414 (504)
+ ..+ .....+++++|++..+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 0 000 1124678899999999
Q ss_pred EEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCce
Q 010669 415 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAA 491 (504)
Q Consensus 415 ~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v 491 (504)
+.|+.|+ |++|.+.............+..+++.++|+||+.||+++... +.+|++.+.. .....+--| ++.|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~---~~~~~w~FH--takI 533 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE---VKTNRWAFH--TAKI 533 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc---eecceeeee--eeeE
Confidence 9999999 999999876655444445568899999999999999999877 9999984421 123334346 8999
Q ss_pred eEEEEeecCcc
Q 010669 492 SFLFLFVLGQT 502 (504)
Q Consensus 492 ~~l~~~~~g~~ 502 (504)
.+++++|+++.
T Consensus 534 ~~~aWsP~n~~ 544 (603)
T KOG0318|consen 534 NCVAWSPNNKL 544 (603)
T ss_pred EEEEeCCCceE
Confidence 99999999864
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-30 Score=257.80 Aligned_cols=248 Identities=23% Similarity=0.387 Sum_probs=221.0
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
-+..|.++|..++|+|++.++++||.|-.|+||+..+.+++.++.||-+.|..+.|++.-.+++++|.|.+|+||++.+.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE-----------------e-------ecCCC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ-----------------V-------SDAGT 353 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~-----------------~-------~~~~~ 353 (504)
.++..+.+|+..|.|..|||....++++|.|.+|++||+..-+.... + ...-.
T Consensus 126 ---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 126 ---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred ---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 89999999999999999999999999999999999999853211000 0 00113
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669 354 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 430 (504)
Q Consensus 354 ~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~ 430 (504)
.+|..+|+-++|||.-.+|++|+.|..|++|.+...+ .+.+..+|.+.|+++-|+|...++++.++|+ |+|||+.+.
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 5899999999999999999999999999999997655 3556789999999999999999999999998 999999999
Q ss_pred cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEee
Q 010669 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA 470 (504)
Q Consensus 431 ~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~ 470 (504)
+.++++... ....+.++-+|..+.+++|.+. +.||.+.
T Consensus 283 t~v~tfrre--ndRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 283 TSVQTFRRE--NDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cceeeeecc--CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 999998765 5788999999999999988877 8888874
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=5.8e-32 Score=241.35 Aligned_cols=237 Identities=23% Similarity=0.430 Sum_probs=205.1
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
+..+|.+.|.|+.|. .+.+++|+.|.+|+|||+++++++.++-+|...|..+.|+ +.++++++.|.++.+||+...
T Consensus 232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc
Confidence 567899999999986 5699999999999999999999999999999999999995 568999999999999999876
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
....+.+.+.+|...|+.+.|+ .+++++++.|.+|++|++.++..+..+. +|..+|.|+.+. |+++++|++
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-----gHkRGIAClQYr--~rlvVSGSS 378 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACLQYR--DRLVVSGSS 378 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-----cccccceehhcc--CeEEEecCC
Confidence 5556667788999999999995 6799999999999999999999998886 788889888774 889999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeee-------ecCCCCCCeeEEE
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF-------ESSDSETPTNSVD 449 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~-------~~~~~~~~v~~i~ 449 (504)
|.+|++||+..|.++..+.||..-|.|+.| |.+.+++|+.|| |++||+..+...+.. ....+.+.|..+.
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 999999999999999999999999999999 778999999999 999999875433111 1123467899999
Q ss_pred ECCCCCEEEEEeCc--EEEEEeec
Q 010669 450 FDHSGSYLAVASAD--IRVYQVAS 471 (504)
Q Consensus 450 ~~~~g~~l~~~~~d--i~vw~~~~ 471 (504)
|+ ...+++++.| |-|||+..
T Consensus 457 FD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 457 FD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ec--ceEEEeccCCCeEEEEEcCC
Confidence 95 3455555555 99999944
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.6e-29 Score=221.94 Aligned_cols=262 Identities=22% Similarity=0.315 Sum_probs=226.7
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC--CCcEEEEeCCCCCCc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNY 300 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~--dg~i~iwd~~~~~~~ 300 (504)
...|.++.|+++|.++++++.|.++++||..+++.++++..+.-.|..++|....+.++.++. |.+|+..++.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--- 90 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--- 90 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC---
Confidence 557999999999999999999999999999999999999988888999999877777776665 889999999886
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~ 380 (504)
+.++.+.||...|++++.+|-++.|++++.|++|++||++..++...+.. ..-..++|+|+|.++|++...+.
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCe
Confidence 78999999999999999999999999999999999999998887776652 23467899999999999998889
Q ss_pred EEEEEcCCC--ceeeeee---CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC-eeEEEECCC
Q 010669 381 VKIWDVKSQ--ANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP-TNSVDFDHS 453 (504)
Q Consensus 381 I~iwd~~~~--~~~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~-v~~i~~~~~ 453 (504)
|++||+|+. .+..+|. +.....+.|.|||||++|+.++..+ +++.|.-+|....++..+..... ..+.+|.||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999974 3444443 3456899999999999999999998 99999999998888887654332 357889999
Q ss_pred CCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 454 g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
++++++|+.| |.+|++ +++..+..+.+- +.+++.++.|.|.
T Consensus 244 s~Fvl~gs~dg~i~vw~~----~tg~~v~~~~~~-~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNL----ETGKKVAVLRGP-NGGPVSCVRFNPR 286 (311)
T ss_pred CcEEEEecCCCcEEEEEc----CCCcEeeEecCC-CCCCccccccCCc
Confidence 9999999998 999999 778888888883 3778888888764
No 53
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=3.8e-29 Score=251.85 Aligned_cols=249 Identities=19% Similarity=0.312 Sum_probs=195.4
Q ss_pred EeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCC-----cceeEEeccCCcCeE
Q 010669 241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGN-----YDCKHTLKDHTAEVQ 314 (504)
Q Consensus 241 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~ 314 (504)
|+.+|.|.+|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.+++. ..+...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998877888899999999999999996 78999999999999999976421 123456788999999
Q ss_pred EEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 010669 315 AVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 393 (504)
Q Consensus 315 ~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~ 393 (504)
+++|+|++.. +++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999998875 5789999999999999998766553 23579999999999999999999999999999999999
Q ss_pred eeeCCCCCeEE-----EEEcCCCcEEEEEeCC----c-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669 394 KFDGHVGAVTA-----ISFSENGYYLATAAHD----G-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 394 ~~~~~~~~i~~-----l~~s~~g~~l~s~~~d----~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
.+.+|.+.+.. ..|++++.+|++++.+ + |+|||+++ ..++..+......+.+......++|.++++|+.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 99999876543 2356888888887655 3 99999996 455555544332333333444556888888888
Q ss_pred c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 463 D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 463 d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
| |++|++... .+..+..+....++.+++|.|.-
T Consensus 284 D~tIr~~e~~~~-----~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLG-----SIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCC-----cEEeecccccCCCccceEEcccc
Confidence 8 999999432 23333333336788899998864
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.8e-29 Score=239.12 Aligned_cols=240 Identities=30% Similarity=0.578 Sum_probs=215.1
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
...|...+..+.|+++++++++++.+|.|++|++.+++.+..+..|...|.++.|++++.++++++.||.|.+||+.+.
T Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 125 (289)
T cd00200 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG- 125 (289)
T ss_pred EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-
Confidence 3457778899999999999999999999999999988888888899999999999999888888888999999999864
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.....+..|...|.++.|+|++.++++++.||.|++||+++++....+. .+...+.++.|+|+++.+++++.+
T Consensus 126 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 126 --KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred --EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-----cCccccceEEECCCcCEEEEecCC
Confidence 5667777899999999999999999988889999999999888777665 455689999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l 457 (504)
|.|++||++.++.+..+..|...+.++.|++++.++++++.++ |++||+.+++....+..+ ...+.+++|++++.+|
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l 276 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRL 276 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEE
Confidence 9999999999999988888989999999999999999888677 999999988887777744 5789999999999999
Q ss_pred EEEeCc--EEEEE
Q 010669 458 AVASAD--IRVYQ 468 (504)
Q Consensus 458 ~~~~~d--i~vw~ 468 (504)
++++.| +++|+
T Consensus 277 ~~~~~d~~i~iw~ 289 (289)
T cd00200 277 ASGSADGTIRIWD 289 (289)
T ss_pred EEecCCCeEEecC
Confidence 999988 98885
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.1e-30 Score=220.89 Aligned_cols=265 Identities=21% Similarity=0.315 Sum_probs=226.8
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE--EcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~ 295 (504)
..+|...|.+++|+.+|..|++|+.|+++.+|++....... .+.+|.+.|-.++|+| +...|++++.|.+|++||++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 44577789999999999999999999999999998775544 3468999999999988 66789999999999999999
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
.+ ++...+... +.-.-+.|+|+|.+++.++.|..|.+.|.++.+...... ....+.-++|+.++.+|+.-
T Consensus 96 ~~---k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~------~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 96 SG---KCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ------FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred cC---cEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc------ccceeeeeeecCCCCEEEEe
Confidence 86 666666543 344568899999999999999999999999887766553 23468889999988888888
Q ss_pred eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g 454 (504)
+..|+|.|.....-+++..++.|.....||.|+|+|++||+|+.|. +.+||+...-+++.+... .-+|..+.|+.+|
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~dg 243 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSHDG 243 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEeccCc
Confidence 8889999999999999999999999999999999999999999998 999999999888888766 6799999999999
Q ss_pred CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
++||++++| |-|=++ +++..+..++. +++-..+++.|...+
T Consensus 244 ~~lASaSEDh~IDIA~v----etGd~~~eI~~---~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEV----ETGDRVWEIPC---EGPTFTVAWHPKRPL 286 (313)
T ss_pred ceeeccCccceEEeEec----ccCCeEEEeec---cCCceeEEecCCCce
Confidence 999999999 777777 56666666643 667777888776544
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-30 Score=247.69 Aligned_cols=238 Identities=21% Similarity=0.359 Sum_probs=218.2
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
.-||.++.|-+..+++++|+.|..|+||+..+++.+..|..|.+-|.+++.+|...+++++|.|-+|++||.+. .+.+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~ 132 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWAC 132 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC--ceee
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999975 4789
Q ss_pred eEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCC
Q 010669 303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEA 379 (504)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg 379 (504)
.+++.+|...|.+++|+| |.+.|++++.|++|++|.+.+..+..++. +|..+|+|++|-+ |..+|++|+.|.
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-----ccccCcceEEeccCCCcceEEecCCCc
Confidence 999999999999999999 56799999999999999999988888876 8889999999998 446999999999
Q ss_pred cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~ 458 (504)
+|+|||..+..++.++.||...|+.+.|+|.-.++++|++|| |+||.-.+.+...++... ...+++++-.+.++.++
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIA 285 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEE
Confidence 999999999999999999999999999999999999999999 999999988877777665 56899999988888888
Q ss_pred EEeCc-EEEEEe
Q 010669 459 VASAD-IRVYQV 469 (504)
Q Consensus 459 ~~~~d-i~vw~~ 469 (504)
+|.+. ..+..+
T Consensus 286 vG~Deg~i~v~l 297 (794)
T KOG0276|consen 286 VGFDEGSVTVKL 297 (794)
T ss_pred EeccCCcEEEEc
Confidence 88776 444454
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=227.96 Aligned_cols=275 Identities=19% Similarity=0.387 Sum_probs=224.4
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC------------------CceEEEcccCccceeEEEEeeCCCEE
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDLF 280 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~l~~s~~~~~l 280 (504)
...|++++.+.+|++||.++++|+.|..|+|+|++. ...++++..|...|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 467899999999999999999999999999999751 13578888999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669 281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360 (504)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 360 (504)
++|+.|++|++||+......+..+.+ ....+|.++.|||.|.+++.|..-.++++||+++-++...-. ....|...|
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai 264 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAI 264 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--cccccccce
Confidence 99999999999999764221222223 345789999999999999999999999999999988876554 245788999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCC-CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (504)
Q Consensus 361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~-~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~ 437 (504)
+++.+++.|++.++|+.||.|++||--+++++.++. .|.+ .|.+..|..||+|+++.+.|. |++|.+.+++.+..+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 999999999999999999999999999999998885 4654 799999999999999999998 9999999999999988
Q ss_pred cCCCCC---CeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 438 SSDSET---PTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 438 ~~~~~~---~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+....+ --+...|.....|++.-.+. +.-||-.. .....+..+ +| ++.+..+.-+|.+.
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--adr~~l~sl-gH--n~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--ADRVALLSL-GH--NGAVRWIVHSPVEP 409 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccc--hhhhhhccc-CC--CCCceEEEeCCCCC
Confidence 753212 23456788888888876654 77788622 112222233 66 88888888777653
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.3e-31 Score=224.57 Aligned_cols=266 Identities=18% Similarity=0.319 Sum_probs=236.1
Q ss_pred cCCCCCeEEEEecc---CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 220 KTSKPGIVSLDIHY---SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 220 ~~~~~~I~~~~~s~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
.+|..+|..++||| +|-+|++++.||.-.+-+-++|.-+.+|.+|.+.|++..+..+....++++.|-+-++||.-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 57899999999986 788999999999998888889999999999999999999988888899999999999999988
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
+ ..++.+ .|...|..++|+.|.++|++|+.++.+++||++..+....- ..+|...|..+-|....+.|+++.
T Consensus 91 g---delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E----~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 91 G---DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE----ISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred h---hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh----hcCCCCcceeEEEeccCceEEeec
Confidence 6 455665 58889999999999999999999999999999876543222 237889999999999888999999
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
.|++||+||.++++.+.++. ...+|+++.++++|.+|.++...+|.+||..+...++.++.+ ..|.+..++|+..+
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEF 238 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc---cccccccccCCCce
Confidence 99999999999999999887 567899999999999998887777999999999999988875 57999999999999
Q ss_pred EEEEeCc--EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEeecCccc
Q 010669 457 LAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~~g~~~ 503 (504)
+++|++| ++.||+ .++..+..+ .+| .++|-|+.|+|+|..+
T Consensus 239 fVaGged~~~~kfDy----~TgeEi~~~nkgh--~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDY----NTGEEIGSYNKGH--FGPVHCVRFSPDGELY 282 (334)
T ss_pred EEecCcceEEEEEec----cCCceeeecccCC--CCceEEEEECCCCcee
Confidence 9999999 777787 678888886 888 8999999999999765
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=246.31 Aligned_cols=269 Identities=19% Similarity=0.279 Sum_probs=236.4
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+|++.|.++++|.+...+++|+ .+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence 457999999999999888888776 56899999999999999974 37999999999999999999999999999875
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-----CeEEE--EeecCCCCCCCCCeEEEEECCCCCE
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLT--QVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-----~~~~~--~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
..+.++..|.+.|++++.+||+..+++||.|.+|++||..- +...+ .+.....-.-...|.|+.++|||++
T Consensus 445 --~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 --SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred --hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 55666779999999999999999999999999999999742 11111 1110001123467999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~ 450 (504)
|+++--|.+|+||-+.+.+....+.||.-||.|+..|||+..+++|+.|. |++|-+.-|.+-+++..| ...|.++.|
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH--dDSvm~V~F 600 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH--DDSVMSVQF 600 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc--cCceeEEEE
Confidence 99999999999999999999999999999999999999999999999997 999999999999998877 679999999
Q ss_pred CCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 451 ~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
.|....++++|.| ++-||- ..+.+++.+++| ...|.+++++|+|.
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg----~kFe~iq~L~~H--~~ev~cLav~~~G~ 647 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDG----EKFEEIQKLDGH--HSEVWCLAVSPNGS 647 (888)
T ss_pred cccceeEEEecCcceEEeech----hhhhhheeeccc--hheeeeeEEcCCCC
Confidence 9999999999999 999996 789999999999 88999999999994
No 60
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.1e-29 Score=230.02 Aligned_cols=272 Identities=17% Similarity=0.288 Sum_probs=234.2
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE----EE---c-----------ccCccceeEEEEeeCCC
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV----TT---L-----------SGHSKKVTSVKFVTEGD 278 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~----~~---~-----------~~h~~~v~~l~~s~~~~ 278 (504)
..+..|.-+|.+|+++|++++.++++.+|+|.-|++.+++.. .. + ++|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 446678889999999999999999999999999998877532 11 0 26888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC
Q 010669 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358 (504)
Q Consensus 279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 358 (504)
+|++|+.|..|.||+.++. ..++.+.+|.+.|.+++|-...+.+++++.|++|++|+++....+.++. +|..
T Consensus 216 ylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-----GHqd 287 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-----GHQD 287 (479)
T ss_pred EEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-----CCcc
Confidence 9999999999999999886 6777899999999999999888899999999999999999877766665 8889
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (504)
Q Consensus 359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~ 437 (504)
.|..+....-++.+-+|+.|+++++|++.. ..-..|.+|.+.+-|++|- |...+++|+++| |.+|++.+.+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence 999999999999999999999999999944 3344677889999999998 556899999999 9999999988877665
Q ss_pred cCCC----------CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 438 SSDS----------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 438 ~~~~----------~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
..++ ..+|++++..|...++++|+.+ +++|.+..+-...+.+..++- .+.|++++|+.+|+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSGK 438 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCCC
Confidence 4221 2278999999999999999988 999999776666777777764 78999999999997
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6e-30 Score=219.59 Aligned_cols=236 Identities=21% Similarity=0.365 Sum_probs=201.6
Q ss_pred CCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 223 KPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 223 ~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
.+.+..++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++ ++..++++|.||+|++|+....
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-- 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-- 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--
Confidence 5678999999864 5888999999999999643 367889999999999999998 5567888899999999998775
Q ss_pred cceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS 377 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~ 377 (504)
..+.++.+|...|....|+| .++.|+++|.||++++||++.......+. .|...+.|+.|+. +.+.+++|+.
T Consensus 138 -~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 138 -NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-----AHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred -cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-----eccceeEeecccccCCcEEEecCC
Confidence 67888999999999999999 57899999999999999998754444454 6678999999999 7789999999
Q ss_pred CCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECC-
Q 010669 378 EALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDH- 452 (504)
Q Consensus 378 dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~- 452 (504)
|+.|++||+++. .++..+.+|.-+|..++|||. ...|++++.|- ++|||..... .+.++..| ...+..+.|++
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~ 289 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLF 289 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccc
Confidence 999999999975 578899999999999999995 56889999996 9999998554 34444433 67788999988
Q ss_pred CCCEEEEEeCc--EEEEE
Q 010669 453 SGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~ 468 (504)
++.++|.++.| +.||+
T Consensus 290 ~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWN 307 (311)
T ss_pred cCceeeecccccceeeec
Confidence 56789999988 99997
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=224.24 Aligned_cols=245 Identities=18% Similarity=0.272 Sum_probs=209.8
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
...+|+..|+++.|+.+|.+||||+.+|.|.||+..++.....+...-..|.=+.|+|.+..|+.|+.||.+-+|.+...
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 34679999999999999999999999999999999999888888766677888999999999999999999999999875
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC------------------------
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT------------------------ 353 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------ 353 (504)
...+.+.+|+.++++-.|.|+|+.++++..||+|++||+.++.+...+.....
T Consensus 181 ---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 181 ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 56677889999999999999999999999999999999999988777651100
Q ss_pred --------------C--------CCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669 354 --------------D--------GRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (504)
Q Consensus 354 --------------~--------~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (504)
. .+...+.|+.+.| .-.+.|+|+.||+|.|||+...+..+.+. |..+|+.+.|-
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~ 336 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL 336 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence 0 1111222333333 45678999999999999998877666665 88899999998
Q ss_pred CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 409 ~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+ ..+|++++.+| |+.||.|+|++...+.+| ...|.+++++|++++++++|.| .+||++
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 8 67888888898 999999999999999887 7899999999999999999999 888886
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.8e-29 Score=219.68 Aligned_cols=242 Identities=23% Similarity=0.367 Sum_probs=211.3
Q ss_pred eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEe
Q 010669 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQ 293 (504)
Q Consensus 215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd 293 (504)
+.-..++|++.|..+.|.+|++.++++|.|.+|+.||.++|+.++.+++|.+-|+.+.-+.-|. ++.+++.||++++||
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 3345668999999999999999999999999999999999999999999999999998554443 677899999999999
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
++.. .+++++. ..-+++++.|..++..+++|+-|+.|++||++.+.....+. +|...|+.+..+|+|.++.
T Consensus 162 ~R~k---~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-----Gh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 162 IRKK---EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-----GHADTITGLSLSRYGSFLL 232 (338)
T ss_pred eccc---chhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEee-----cccCceeeEEeccCCCccc
Confidence 9875 4555543 35679999999999999999999999999999999888887 8889999999999999999
Q ss_pred EEeCCCcEEEEEcCCC----ceeeeeeCCCC----CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669 374 TGTSEALVKIWDVKSQ----ANVAKFDGHVG----AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~----~~~~~~~~~~~----~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
+-+.|.++++||++-. +++..+.+|.. ....++|+|++..+.+|+.|. +++||......+..+.++ .+.
T Consensus 233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gs 310 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGS 310 (338)
T ss_pred cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--cee
Confidence 9999999999999853 45777776532 456789999999999999998 999999988888877776 789
Q ss_pred eeEEEECCCCCEEEEEeCcEEEE
Q 010669 445 TNSVDFDHSGSYLAVASADIRVY 467 (504)
Q Consensus 445 v~~i~~~~~g~~l~~~~~di~vw 467 (504)
|+.+.|+|...+|.+++.|-+||
T Consensus 311 vn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 311 VNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred EEEeeecCCCcEEEEeccCceeE
Confidence 99999999999999999994444
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.1e-28 Score=264.36 Aligned_cols=237 Identities=21% Similarity=0.343 Sum_probs=201.3
Q ss_pred CCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 223 KPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 223 ~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--- 608 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--- 608 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC---
Confidence 45688999987 478999999999999999999999999999999999999997 7889999999999999999875
Q ss_pred ceeEEeccCCcCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 301 DCKHTLKDHTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.++..+..+ ..|.++.|+ +++.+|++|+.||.|++||++++.. ...+. +|...|.++.|. ++.+|++++.|
T Consensus 609 ~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 609 VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----CCCCCEEEEEEe-CCCEEEEEECC
Confidence 556666544 679999995 5789999999999999999987653 33332 677899999997 78899999999
Q ss_pred CcEEEEEcCCC------ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec-----------CC
Q 010669 379 ALVKIWDVKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES-----------SD 440 (504)
Q Consensus 379 g~I~iwd~~~~------~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~-----------~~ 440 (504)
+.|++||++.+ .++..+.+|...+.+++|++++.+|++|+.|+ |++|+......+..+.. ..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 99999999743 56788999999999999999999999999998 99999876544333221 12
Q ss_pred CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 441 SETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 441 ~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+...|.+++|+|++.+|++|+.+ |+||++
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 24569999999999999999988 999986
No 65
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.9e-28 Score=243.56 Aligned_cols=245 Identities=18% Similarity=0.243 Sum_probs=194.0
Q ss_pred ccccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeCC-CEEEEEeCCC
Q 010669 217 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADK 287 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg 287 (504)
++..+|.+.|++++|+| ++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34678999999999999 8899999999999999998765 3467889999999999999975 6899999999
Q ss_pred cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC-CeEEEEEC
Q 010669 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAFH 366 (504)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~~ 366 (504)
+|+|||+.++ .....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +|.. ....+.|.
T Consensus 149 tVrIWDl~tg---~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-----~H~~~~~~~~~w~ 220 (493)
T PTZ00421 149 VVNVWDVERG---KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-----AHASAKSQRCLWA 220 (493)
T ss_pred EEEEEECCCC---eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-----cCCCCcceEEEEc
Confidence 9999999875 5677788999999999999999999999999999999999998877765 3333 34567889
Q ss_pred CCCCEEEEEe----CCCcEEEEEcCCCc-eeeeeeCC-CCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcceeeeec
Q 010669 367 PDGLILGTGT----SEALVKIWDVKSQA-NVAKFDGH-VGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 367 pdg~~l~~g~----~dg~I~iwd~~~~~-~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~~~~~~ 438 (504)
+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++. |+ |++||++++..+.....
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 9877776654 47899999998764 34333323 345666789999999988874 77 99999999887766544
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeCcEEEEEee
Q 010669 439 SDSETPTNSVDFDHSGSYLAVASADIRVYQVA 470 (504)
Q Consensus 439 ~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~ 470 (504)
. ...++..++|.|.-..=+-.++=.++|.+.
T Consensus 301 ~-s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 301 S-SVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred c-CCCCCcceEecccccccccceeeeEEEEec
Confidence 2 245678899988543222222226777763
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=216.18 Aligned_cols=263 Identities=21% Similarity=0.311 Sum_probs=210.4
Q ss_pred EEEEeccC-CCEEEEE-------eCCCcEEEEcCCCCceEEEcc--cCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCC
Q 010669 227 VSLDIHYS-KDVIATG-------GVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 227 ~~~~~s~~-~~~l~sg-------~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~ 295 (504)
.++.|||- .++|+++ ...|.+.|.++...+-+..+. .-.+.+..++|+++ .+.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57888882 2333333 247899999986444443332 24567999999984 5578999999999999965
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILG 373 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~ 373 (504)
.. ..+++.++.|..+|.++.|++. +..++++|.|++|++||...++.+.++. +|...|...+|+| .+++++
T Consensus 92 ~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 92 MP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-----GHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred CC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-----CCccEEEEEecCCCCCCeEE
Confidence 43 3688889999999999999984 5678888999999999999999998876 7889999999999 889999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEE
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~ 450 (504)
+++.||.+++||++..-....+..|...|.|+.|+. |.+.|++|+.|+ |+.||+|+.+ ++..+.. |...|..+.|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g--h~~AVRkvk~ 242 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG--HGLAVRKVKF 242 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC--CceEEEEEec
Confidence 999999999999987655555888999999999998 678899999998 9999999876 3444444 4789999999
Q ss_pred CCCC-CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee--cCccc
Q 010669 451 DHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV--LGQTC 503 (504)
Q Consensus 451 ~~~g-~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~--~g~~~ 503 (504)
+|.. ..|++++.| ++||+.. +.-.++.++..| +..|..+++++ .|++|
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~---~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPE---RQDSAIETVDHH--TEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred CcchhhHhhhccccceEEecccc---cchhhhhhhhcc--ceEEeccccccccCceee
Confidence 9964 688999999 9999983 345567777777 77888887764 34444
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=210.78 Aligned_cols=251 Identities=18% Similarity=0.293 Sum_probs=216.2
Q ss_pred HHhhcccccee--ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE
Q 010669 206 ALERYTQLASH--PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 283 (504)
Q Consensus 206 ~~~~~~~~~~~--~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 283 (504)
.++.|.+.... .-+.+|...|..++.+.|+..+++|+.|..+.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|
T Consensus 40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred eEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence 34455554432 2356888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (504)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (504)
+.|.++++||-+. ..+++++.+....+.|.++... +..|++|+.||+++.||++.|+...... ..+|+|+
T Consensus 120 sfD~s~r~wDCRS-~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~-------g~pit~v 189 (307)
T KOG0316|consen 120 SFDSSVRLWDCRS-RSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-------GHPITSV 189 (307)
T ss_pred cccceeEEEEccc-CCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc-------CCcceeE
Confidence 9999999999987 4567888888888899999885 7889999999999999999998766554 2579999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE--EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC
Q 010669 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT--AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 440 (504)
Q Consensus 364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~ 440 (504)
+|++|++..++++.|+++++.|-.+|+.+..+++|...-. ..+++....++++|++|| |++||+.....+..+..+
T Consensus 190 s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~- 268 (307)
T KOG0316|consen 190 SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV- 268 (307)
T ss_pred EecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-
Confidence 9999999999999999999999999999999999976443 456777788999999999 999999999888887765
Q ss_pred CCCC-eeEEEECCCCCEEEEEeCc-EEEEE
Q 010669 441 SETP-TNSVDFDHSGSYLAVASAD-IRVYQ 468 (504)
Q Consensus 441 ~~~~-v~~i~~~~~g~~l~~~~~d-i~vw~ 468 (504)
... +.++.++|....++++... +..|.
T Consensus 269 -~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 269 -STVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred -CceeEEeeecccCccceeEecCCceecee
Confidence 334 8899999987766666655 66664
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-28 Score=222.14 Aligned_cols=274 Identities=19% Similarity=0.309 Sum_probs=220.4
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC---EEEEEeCCCcEEEEeCCCC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD---LFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~---~l~s~s~dg~i~iwd~~~~ 297 (504)
.|.+-|.++... ++.+++|++||.+++||.. |+....+.+|.++|.+++|.-... .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 367778888877 7899999999999999975 889999999999999999865333 5999999999999988765
Q ss_pred CC-cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-----EEEE---------------eecCCCCCC
Q 010669 298 GN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-----CLTQ---------------VSDAGTDGR 356 (504)
Q Consensus 298 ~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-----~~~~---------------~~~~~~~~~ 356 (504)
.. ..+.....||...|.++...++|..+++|+.|.+|.+|+..+.. .... .......+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 32 23344455999999999999999999999999999999932110 0000 000013488
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc-ee
Q 010669 357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FR 434 (504)
Q Consensus 357 ~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~-~~ 434 (504)
..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...++|+.++|...+|++|+.|. +++||.|++.- +.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999998 66788999999999999999998888874 46899999999999999999998 99999998642 23
Q ss_pred eeecCCCCCCeeEEEECCCCCE-EEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcccC
Q 010669 435 SFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS 504 (504)
Q Consensus 435 ~~~~~~~~~~v~~i~~~~~g~~-l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~s 504 (504)
......|...|.++.|+|...| |++|+.| +++||+ +..+..+..+.+| .+.|.++++...+-+.|
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv---RS~k~plydI~~h--~DKvl~vdW~~~~~IvS 405 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV---RSTKAPLYDIAGH--NDKVLSVDWNEGGLIVS 405 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe---ccCCCcceeeccC--CceEEEEeccCCceEEe
Confidence 3333444789999999997654 6677888 999999 3456689999999 89999999987765543
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.6e-29 Score=231.11 Aligned_cols=228 Identities=22% Similarity=0.336 Sum_probs=201.3
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
+..|++++|-.||++|++|+..|.|+|||..+...++.+.+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+. .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~ 144 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---Y 144 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---E
Confidence 567999999999999999999999999997776778899999999999999995 557889999999999999885 3
Q ss_pred eeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 302 CKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
....+.+|++.|.|.+|+|.. ..+++||.||.|++||++.. ..+..+ .|..+|..+.+-|.|.++++++. .
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------nhg~pVe~vl~lpsgs~iasAgG-n 217 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------NHGCPVESVLALPSGSLIASAGG-N 217 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------cCCCceeeEEEcCCCCEEEEcCC-C
Confidence 466788999999999999954 58999999999999999987 444444 56789999999999999999865 5
Q ss_pred cEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669 380 LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 457 (504)
Q Consensus 380 ~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l 457 (504)
.|+|||+-+| +.+..+..|...|+|+.+..++..|++|+-|+ |++||+.+.+.+..+.. .++|.+++.+|+++.+
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTV 294 (487)
T ss_pred eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceE
Confidence 7999999855 45555566999999999999999999999999 99999999999988887 4799999999999999
Q ss_pred EEEeCc
Q 010669 458 AVASAD 463 (504)
Q Consensus 458 ~~~~~d 463 (504)
++|..+
T Consensus 295 viGmsn 300 (487)
T KOG0310|consen 295 VIGMSN 300 (487)
T ss_pred EEeccc
Confidence 999988
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-28 Score=214.35 Aligned_cols=261 Identities=17% Similarity=0.284 Sum_probs=216.6
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEEEeCCCcEEEEeCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~s~dg~i~iwd~~~ 296 (504)
+..|.++|++++.+ +.++++||.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 56789999999986 89999999999999999999988999999999999999988654 899999999999998754
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
|.++..+++|.+.|+.++.||.+++.++.+.|+.+++||+-+|+.-...... ...+.+.|+|.|.+|+.+.
T Consensus 117 ---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~------~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 ---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK------NKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred ---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC------CcceeeEEcCCCCEEEEEe
Confidence 6899999999999999999999999999999999999999998876665422 2345599999999999987
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE--CCC
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF--DHS 453 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~--~~~ 453 (504)
.++ |-+|.+.+......+.. ...+.|+.|. ++..|++|++++ |.+||.....+...+..| ...|.++.+ .|+
T Consensus 188 ~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 188 RNK-IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPE 262 (362)
T ss_pred ccE-EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecCC
Confidence 764 88999887766555542 2567888887 567888888888 999999988888888777 678888874 567
Q ss_pred CCEEEEEeCc--EEEEEeeccCc-cceeEEEccCCCCCCceeEEEEee
Q 010669 454 GSYLAVASAD--IRVYQVASVKA-DWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 454 g~~l~~~~~d--i~vw~~~~~~~-~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
+.||++++.| |+|||++...+ ..+.+..+.. +..++|+....
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~---~~RltCl~~~~ 307 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT---NVRLTCLRVKL 307 (362)
T ss_pred ceEEEEeccCceEEEEEccccccCCcceeEEeec---CCccceeeehh
Confidence 8999999999 99999866433 2345555544 66788887653
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=8.6e-29 Score=231.67 Aligned_cols=274 Identities=20% Similarity=0.309 Sum_probs=210.3
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc----eEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd 293 (504)
..+|...|.++++.|.|-.|++|+.|..|++||+.... ..+.+. .....|+++.|++.|..|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 35567789999999999999999999999999986432 122222 3445799999999999988888888999999
Q ss_pred CCCCCCc---------ceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCCCCCCeEE
Q 010669 294 GSEDGNY---------DCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 294 ~~~~~~~---------~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~ 362 (504)
-...... .-...-++|...++|.+|||.. ..|++++.||++++||+...+. ...+......+..-.++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 6542111 1123346899999999999965 5899999999999999986543 333433334456678999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCC--CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-ceee
Q 010669 363 AAFHPDGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRS 435 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-~~~~ 435 (504)
++|++||++||+|+.||.|.+||.++... ...-+.|.. .|+||.||++|++|++-+.|+ +++||++..+ ++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 99999999999999999999999865432 223356776 899999999999999999998 9999999865 4555
Q ss_pred eecCCCCCCeeEEEECCCCCEEEEEeCc--------EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 436 FESSDSETPTNSVDFDHSGSYLAVASAD--------IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 436 ~~~~~~~~~v~~i~~~~~g~~l~~~~~d--------i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
.........-+.++|+|+.++|++|..- +.+|+- .+...+..+.-- +..|..+.+.|
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~----~t~d~v~ki~i~--~aSvv~~~Whp 467 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR----MTLDTVYKIDIS--TASVVRCLWHP 467 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec----cceeeEEEecCC--CceEEEEeecc
Confidence 5444445667889999999999998653 677775 667777777543 55666666554
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-28 Score=236.51 Aligned_cols=240 Identities=18% Similarity=0.264 Sum_probs=212.1
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
+...+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.||.|..+|++.
T Consensus 212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 4444578999999999999999999999999999999999999998 99999999996 77899999999999999988
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 375 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g 375 (504)
... ...++.+|...|..+.|+++++++++|+.|+.+.|||.........+. .|...|..++|+| ...+||+|
T Consensus 290 ~~~--~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 290 SQH--VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----EHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred chh--hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----ccceeeeEeeeCCCccCceEEc
Confidence 642 222478999999999999999999999999999999997777777765 7889999999999 77788886
Q ss_pred e--CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669 376 T--SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 376 ~--~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~ 450 (504)
+ .|+.|++||..++..+.... ..+.|.+|.|++..+-|+++... + |.||+..+.+.+..+.+| ...|..+++
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~ 439 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLAL 439 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEE
Confidence 5 68999999999999988877 45689999999988777766433 4 999999998888888877 678999999
Q ss_pred CCCCCEEEEEeCc--EEEEEe
Q 010669 451 DHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 451 ~~~g~~l~~~~~d--i~vw~~ 469 (504)
+|||..+++|+.| +++|++
T Consensus 440 SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCCCCEEEEecccCcEEeccc
Confidence 9999999999998 999998
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-28 Score=220.68 Aligned_cols=242 Identities=24% Similarity=0.409 Sum_probs=205.4
Q ss_pred cccCCCCCeEEEEeccCCC---EEEEEeCCCcEEEEcCCCCce----EEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669 218 LHKTSKPGIVSLDIHYSKD---VIATGGVDTNAVLFDRPSGQI----VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~---~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~ 290 (504)
...+|.++|.+++|.-... .+++++.|.++++|..+.++. +..-.||...|-++...++|..+++|+.|.+|+
T Consensus 139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk 218 (423)
T KOG0313|consen 139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK 218 (423)
T ss_pred EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee
Confidence 4568999999888764433 699999999999998877644 233359999999999999999999999999999
Q ss_pred EEeCCCC----------------------CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669 291 VWQGSED----------------------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 348 (504)
Q Consensus 291 iwd~~~~----------------------~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (504)
||+.... +...++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+
T Consensus 219 iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 219 IWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred ecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee
Confidence 9993221 11245667889999999999997 778999999999999999999988877
Q ss_pred ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc---eeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EE
Q 010669 349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA---NVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VK 423 (504)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~---~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~ 423 (504)
.. ...+.|+.++|..++|++|+.|..|++||.|++. ...+|.+|.+.|..+.|+| +.+.|++|+.|+ ++
T Consensus 298 ~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 298 TT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ec------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 53 3579999999999999999999999999999863 4567889999999999999 567889999998 99
Q ss_pred EEEcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 424 LWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 424 vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+||+|+.+ ++..+..| ...|.++.|. .+.++++||.| ++|+..
T Consensus 372 lWDvRS~k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEeccCCCcceeeccC--CceEEEEecc-CCceEEeccCcceEEEecc
Confidence 99999887 77777666 7899999997 56789999999 888875
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=239.35 Aligned_cols=257 Identities=24% Similarity=0.355 Sum_probs=225.9
Q ss_pred hHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe
Q 010669 205 DALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s 284 (504)
+.++-|.......+..-...-+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.|++++.+||+..+++||
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 44555655544444444456789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCC----CCccee------EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 010669 285 ADKTVRVWQGSED----GNYDCK------HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 354 (504)
Q Consensus 285 ~dg~i~iwd~~~~----~~~~~~------~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 354 (504)
.|.+|++||..-. +..... .++ .-...|.|+.++|||++++++--|.++++|-+++.+....+.
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY----- 547 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY----- 547 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-----
Confidence 9999999996421 111111 112 235679999999999999999999999999999988777765
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce
Q 010669 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF 433 (504)
Q Consensus 355 ~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~ 433 (504)
+|.-+|.|+.++||++++++|+.|..|++|-+.=|.+-..|-+|...|.++.|.|....+++++.|+ |+-||-.+...+
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 8889999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 434 ~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+.+..| ...|++++.+|+|.|++++|.| |++|.-
T Consensus 628 q~L~~H--~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 628 QKLDGH--HSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeeccc--hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 999887 6799999999999999999998 999985
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.5e-29 Score=232.91 Aligned_cols=244 Identities=20% Similarity=0.396 Sum_probs=213.1
Q ss_pred eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEe
Q 010669 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQ 293 (504)
Q Consensus 215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd 293 (504)
....+.+|..+|.+++|+.+|..+++++.|+.+++||+++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence 344567899999999999999999999999999999999999999887 34568999999988 7899999999999999
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
++.+ +.++.+..|-+.|..+.|-++|.++++++.|++++||+.+.+-.+..+.. .......|+..+|++.+++
T Consensus 329 iRs~---kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~----~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 329 IRSG---KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD----PEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred ccch---HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc----hhhccCcceecCCCCCeeh
Confidence 9987 67777888999999999999999999999999999999998877766543 2334678999999999999
Q ss_pred EEeCCCcEEEEEcCCC---ceeeeeeCCC--CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669 374 TGTSEALVKIWDVKSQ---ANVAKFDGHV--GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~---~~~~~~~~~~--~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~ 447 (504)
+-+.|+.|.+|.+... .....|.+|. +.-..+.|||||.+|++|+.+| +.+||.++.+.+..+..+ ...+..
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~ 479 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIG 479 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEE
Confidence 9999999999997543 2344677775 4567789999999999999999 999999999999999887 689999
Q ss_pred EEECCCC-CEEEEEeCc--EEEEE
Q 010669 448 VDFDHSG-SYLAVASAD--IRVYQ 468 (504)
Q Consensus 448 i~~~~~g-~~l~~~~~d--i~vw~ 468 (504)
+.|+|.. ..+|+++.+ |++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 9999965 678888888 99985
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.8e-29 Score=214.08 Aligned_cols=244 Identities=22% Similarity=0.317 Sum_probs=217.9
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
-+.+|++.|++..++.+....++++.|-+.+|||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..++|||++..
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p 132 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP 132 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence 356899999999999988899999999999999999999998887 8888999999999999999999999999999875
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
. .+...+.+|.+.|..+.|....+.|++++.|++|++||.+++..+..+.. +..|+++.+++||.++.++ .
T Consensus 133 ~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia-~ 203 (334)
T KOG0278|consen 133 K--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIA-Y 203 (334)
T ss_pred C--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEe-c
Confidence 4 55667789999999999999999999999999999999999999998863 3679999999999988776 4
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
.+.|.+||.++...+..++ ....|.+.+++|+...+++|++|. ++.||..++..+..+. ..|.++|.++.|+|+|..
T Consensus 204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCce
Confidence 5679999999998888887 446799999999999999999998 9999999999888762 233689999999999999
Q ss_pred EEEEeCc--EEEEEeeccC
Q 010669 457 LAVASAD--IRVYQVASVK 473 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~~~ 473 (504)
.++|+.| |++|+....+
T Consensus 282 yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeccCCCceEEEEEecCCC
Confidence 9999999 9999986654
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=240.07 Aligned_cols=253 Identities=28% Similarity=0.519 Sum_probs=224.4
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
.+...+.+..|. +.++++++.+++|++||..++..+.. +.+|.+.|+++++..-+.++++|+.|.++++||..++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 346678888888 67899999999999999999998888 9999999999999876889999999999999998887
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
.|.+.+.+|.+.|.++... +.++++|+.|.+|++|++.++..+..+. +|..+|.++.++ +.++++|+.||
T Consensus 282 -~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-----~h~~~V~~v~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 282 -ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-----GHTGPVNCVQLD--EPLLVSGSYDG 351 (537)
T ss_pred -cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-----cccccEEEEEec--CCEEEEEecCc
Confidence 8999999999999999774 5678889999999999999999998886 588999999998 88999999999
Q ss_pred cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cceeeeecCCCCCCeeEEEECCCCCEE
Q 010669 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYL 457 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~~~~~~v~~i~~~~~g~~l 457 (504)
+|++||+.+++++..+.+|...|.++.+... ..+++|+.|+ |++||+++. +++.++..+ ...+..+. ..+++|
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~--~~~~~L 426 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLL--LRDNFL 426 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC--cccccccc--ccccee
Confidence 9999999999999999999999999998655 8999999998 999999999 899988876 44554444 467899
Q ss_pred EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669 458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 458 ~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
++++.| |++||. .++++++++.++ +.+.|+++.+.
T Consensus 427 vs~~aD~~Ik~WD~----~~~~~~~~~~~~-~~~~v~~l~~~ 463 (537)
T KOG0274|consen 427 VSSSADGTIKLWDA----EEGECLRTLEGR-HVGGVSALALG 463 (537)
T ss_pred EeccccccEEEeec----ccCceeeeeccC-CcccEEEeecC
Confidence 999999 999998 889999999883 26777777664
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=218.15 Aligned_cols=237 Identities=25% Similarity=0.371 Sum_probs=206.9
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+..++|++++|.+++..+++++.|+.+++|++...+...++.+|++.|+++.|......+++|+.|.+|++||+...
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~- 293 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA- 293 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-
Confidence 3455678999999999999999999999999999999999999999999999999876666999999999999999874
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.|..++. ..+.+.+|..+ ...+++|-.|+.|++||+++......+... +.|+++..+++|..+.+++.|
T Consensus 294 --~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g------g~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 294 --YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG------GRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred --heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC------cceeeEeeccCCeEEeeecCC
Confidence 6666553 33556777665 567889999999999999999988888632 479999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeCC----CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669 379 ALVKIWDVKSQANVAKFDGH----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~ 453 (504)
.++.++|+++......+... ....+.+.|||++.|+++|+.|| |+||++.++++...+........|++++|+|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 99999999998877777532 23588999999999999999999 99999999999988887765557999999999
Q ss_pred CCEEEEEeCc--EEEE
Q 010669 454 GSYLAVASAD--IRVY 467 (504)
Q Consensus 454 g~~l~~~~~d--i~vw 467 (504)
|.+|++++.+ +.+|
T Consensus 443 G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 GSGLLSADKQKAVTLW 458 (459)
T ss_pred CchhhcccCCcceEec
Confidence 9999999988 8888
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=7.7e-28 Score=222.86 Aligned_cols=246 Identities=20% Similarity=0.367 Sum_probs=199.4
Q ss_pred ccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCc----------eEEEcccCccceeEEEEeeCC-CEEEEEeCC
Q 010669 219 HKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQ----------IVTTLSGHSKKVTSVKFVTEG-DLFLTGSAD 286 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~----------~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~d 286 (504)
...|.+.|+.+.+-|... ++++++..+.|+|||..... .-..+.+|.+.-.+++|++.. -.|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 345788999999999654 77888889999999975431 122678999988899999844 479999999
Q ss_pred CcEEEEeCCCCCC----cceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCC
Q 010669 287 KTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 287 g~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~ 359 (504)
++|++||+...+. ......+.+|...|..++||+. ...|++++.|+.+.|||++++ +.... ..+|...
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-----~~ah~~~ 274 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-----VKAHSAE 274 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-----ccccCCc
Confidence 9999999986543 3456678899999999999994 568899999999999999963 22222 3378899
Q ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCccee-
Q 010669 360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFR- 434 (504)
Q Consensus 360 v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~- 434 (504)
+.|++|+| ++.+||+|+.|++|.+||+|+. +++.++.+|...|.+|.|+|+ ...|++++.|+ +.|||+.+-...+
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999 7889999999999999999985 578899999999999999995 57888889998 9999997543322
Q ss_pred -----------eeecCCCCCCeeEEEECCCCCEEEE-EeCc--EEEEEe
Q 010669 435 -----------SFESSDSETPTNSVDFDHSGSYLAV-ASAD--IRVYQV 469 (504)
Q Consensus 435 -----------~~~~~~~~~~v~~i~~~~~g~~l~~-~~~d--i~vw~~ 469 (504)
.|.-..|...|..+.|+|+..++++ .++| +.||+.
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 1333345788999999999987665 4555 999997
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3e-27 Score=237.36 Aligned_cols=242 Identities=24% Similarity=0.471 Sum_probs=215.4
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+|.++|.+++|..-++++++|+.|.+++|||..+|++...+.+|.+.|.++.. .+.++++|+.|.+|++|++.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~- 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG- 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc-
Confidence 5689999999999987889999999999999999999999999999999999977 5567888999999999999976
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.++..+.+|.++|.++..+ +.++++|+.||+|++||+.+++++..+. +|...|.++.+.+. ..+++|+.|
T Consensus 322 --~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-----gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 322 --ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-----GHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred --ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-----CCcceEEEEEecCc-ceEEeeeec
Confidence 7888888899999999997 8999999999999999999999999987 78899999988776 899999999
Q ss_pred CcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 379 ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 379 g~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
+.|++||+++. +++..+.+|..-+.++.+ .+.+|++++.|+ |++||...+.+.+.+... +...|..+++. ...
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEE 466 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cce
Confidence 99999999999 999999999998877776 788999999999 999999999999999874 35678888776 456
Q ss_pred EEEEeCc--EEEEEeeccCccceeEEEc
Q 010669 457 LAVASAD--IRVYQVASVKADWNCIKTF 482 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~~~~~~~~i~~~ 482 (504)
+++++.+ +++||+ .++.++..+
T Consensus 467 il~s~~~~~~~l~dl----~~~~~~~~l 490 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDL----RSGTLIRTL 490 (537)
T ss_pred EEEEecCCeeEEEec----ccCchhhhh
Confidence 6666666 999999 555555544
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=232.53 Aligned_cols=238 Identities=21% Similarity=0.421 Sum_probs=206.4
Q ss_pred EEEec-cCCCEEEEEeCCCcEEEEcCCCCc------eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 228 SLDIH-YSKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 228 ~~~~s-~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
++..+ |.+++|++||.||.|++|+..... .+.+++.|...|+.+....+++.|+++|.|-+|++|+...+. .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-T 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-c
Confidence 44444 356789999999999999976432 367788999999999999999999999999999999998754 4
Q ss_pred ceeEEeccCCcCeEEEEE-ccCCCEEEEEeCCCeEEEEECCCCeE--EEEee---cCCCC-CCCCCeEEEEECCCCCEEE
Q 010669 301 DCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGIC--LTQVS---DAGTD-GRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~-~p~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---~~~~~-~~~~~v~~~~~~pdg~~l~ 373 (504)
.|..++..|.+.|.|+++ -++...+++||.|+.|.+||++++.. +..+. ..... ++...|++++.++.|..|+
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 678888999999999999 77888999999999999999998733 22221 11122 6778999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
+|+..+.|++||.++.+.+..+.||...|..+..++||..+++++.|+ |++||+...+++.++..| ...|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cCceEEEeeCC
Confidence 999999999999999999999999999999999999999999999999 999999999999999887 55699999999
Q ss_pred CCCEEEEEeCcEEEEE
Q 010669 453 SGSYLAVASADIRVYQ 468 (504)
Q Consensus 453 ~g~~l~~~~~di~vw~ 468 (504)
+-.++++|+.|..|+.
T Consensus 266 sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYR 281 (735)
T ss_pred CcceEEecCCCCcEEe
Confidence 9999999999944443
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-27 Score=227.76 Aligned_cols=256 Identities=23% Similarity=0.321 Sum_probs=220.9
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (504)
.-++|+ ..+.|++|.. ..|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||.... ..+..+
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTL 255 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccc
Confidence 346788 4667777753 47999999999876666656889999999999999999999999999998775 566677
Q ss_pred cc-CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669 307 KD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (504)
Q Consensus 307 ~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd 385 (504)
.+ |...|.+++|. +..+.+|+.|+.|..+|++..+..... ..+|...|..+.|++|++++|+|+.|+.+.|||
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh----hhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 77 99999999997 788999999999999999988766552 337889999999999999999999999999999
Q ss_pred cCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeC--Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe
Q 010669 386 VKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAH--DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 461 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~--d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~ 461 (504)
.....+...+..|..+|..++|+| ...+||+|+. |+ |++||..++..+..+.. ...|.++.|++..+-|+++.
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence 988899999999999999999999 5678888764 45 99999999998888766 57899999999987666653
Q ss_pred Cc----EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 462 AD----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 462 ~d----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.. |.||++ .+.+.+..+.+| ...|..++++|+|..
T Consensus 407 G~s~n~i~lw~~----ps~~~~~~l~gH--~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 407 GYSENQITLWKY----PSMKLVAELLGH--TSRVLYLALSPDGET 445 (484)
T ss_pred CCCCCcEEEEec----cccceeeeecCC--cceeEEEEECCCCCE
Confidence 22 999999 668899999999 889999999999864
No 83
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.7e-26 Score=231.28 Aligned_cols=228 Identities=13% Similarity=0.200 Sum_probs=178.4
Q ss_pred cccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCc--------eEEEcccCccceeEEEEeeCCCE-EEEEeCCC
Q 010669 218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQ--------IVTTLSGHSKKVTSVKFVTEGDL-FLTGSADK 287 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg 287 (504)
...+|.++|.+++|+|+ +++|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |++++.||
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 35689999999999997 7899999999999999997542 34467899999999999998875 57899999
Q ss_pred cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCe-----EE
Q 010669 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-----TS 362 (504)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~ 362 (504)
+|+|||+.++ .....+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+. +|...+ ..
T Consensus 149 tIrIWDl~tg---~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-----gH~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIWDIENE---KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-----IHDGGKNTKNIWI 219 (568)
T ss_pred eEEEEECCCC---cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-----cccCCceeEEEEe
Confidence 9999999875 3444454 56789999999999999999999999999999998887765 344333 33
Q ss_pred EEECCCCCEEEEEeCCC----cEEEEEcCC-Cceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669 363 AAFHPDGLILGTGTSEA----LVKIWDVKS-QANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg----~I~iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~ 434 (504)
..|++++.+|++++.|+ .|+|||+++ ++++..+. .+.+.+......++|.++++|+.|+ |++|++..+. +.
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~ 298 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IR 298 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EE
Confidence 45678999999887764 799999995 55665543 2334444444456799999999998 9999998764 33
Q ss_pred eeecCCCCCCeeEEEECCCCC
Q 010669 435 SFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 435 ~~~~~~~~~~v~~i~~~~~g~ 455 (504)
.+....+..++.+++|.|...
T Consensus 299 ~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 299 KVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eecccccCCCccceEEccccc
Confidence 344333467788999999653
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=204.50 Aligned_cols=257 Identities=21% Similarity=0.325 Sum_probs=207.8
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEE
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVW 292 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iw 292 (504)
+...|++.|..+....-|+.|+|++.|++|+||...+. +++.++.+|.++|+.++|.. .|.+|+++++||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 45678889999988889999999999999999998754 56889999999999999964 79999999999999999
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCC-e-EEEEeecCCCCCCCCCeEEEEECCC
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSG-I-CLTQVSDAGTDGRPEGYTSAAFHPD 368 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~-~-~~~~~~~~~~~~~~~~v~~~~~~pd 368 (504)
.-.++ .+........|...|++++|.|. |-.|++++.||.|.+.+.+.. . ....+ ...|.-.+++++|.|-
T Consensus 86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki----~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI----VFAHEIGVNSVSWAPA 160 (299)
T ss_pred ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh----hhccccccceeeecCc
Confidence 97764 77777888899999999999885 568999999999999988765 1 12222 2377889999999995
Q ss_pred ---C-----------CEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCC----cEEEEEeCCc-EEEEEc
Q 010669 369 ---G-----------LILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWDL 427 (504)
Q Consensus 369 ---g-----------~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g----~~l~s~~~d~-v~vwd~ 427 (504)
| +.|++|+.|..|+||+..+++ ...++.+|.+.|..++|.|.- .+|++++.|+ |.||-.
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 5 569999999999999998753 445688999999999999963 5899999999 999987
Q ss_pred CCCcceee-eecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEE
Q 010669 428 RKLKNFRS-FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK 480 (504)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~ 480 (504)
+....... -..+.....+.++.|+..|++|++++.| +.+|.=+. ...|.++.
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~-~Gkw~~v~ 295 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV-DGKWEEVG 295 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC-CCcEEEcc
Confidence 63321111 1122235679999999999999998887 99997532 23455543
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.6e-28 Score=212.13 Aligned_cols=220 Identities=25% Similarity=0.443 Sum_probs=190.1
Q ss_pred EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC------------C---CCcceeEEeccCCcCeEEEEEccCCC
Q 010669 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE------------D---GNYDCKHTLKDHTAEVQAVTVHATNK 323 (504)
Q Consensus 259 ~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~------------~---~~~~~~~~~~~h~~~v~~l~~~p~~~ 323 (504)
..+..|.+++.+.+|++||.++++|+.|..|+|.|++. + .....++++..|.++|+++.|||...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45667999999999999999999999999999999761 1 11245788889999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee---eCCCC
Q 010669 324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVG 400 (504)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~ 400 (504)
.|++|+.|++|++||+......+.++.. ....+|.++.|||.|.+|++|..-..+++||+.+.++...- ..|.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999765433333211 22357999999999999999999999999999998876544 35889
Q ss_pred CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce
Q 010669 401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN 477 (504)
Q Consensus 401 ~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~ 477 (504)
.|+++.++++|.+.++++.|| |++||--+++++.++........|.+..|..+|+|+++.|.| +++|.+ .+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi----~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI----STGR 338 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee----cCCc
Confidence 999999999999999999999 999999999999999876667899999999999999999999 999999 6788
Q ss_pred eEEEccCC
Q 010669 478 CIKTFPDL 485 (504)
Q Consensus 478 ~i~~~~~h 485 (504)
++..+.|-
T Consensus 339 ~l~~YtGA 346 (430)
T KOG0640|consen 339 MLKEYTGA 346 (430)
T ss_pred eEEEEecC
Confidence 88888764
No 86
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=217.93 Aligned_cols=238 Identities=20% Similarity=0.330 Sum_probs=203.5
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
.+|..+|..+.||||.++|++++.+..+.+||+.+|.....+. +|...+.+++|.|||..+++|+.|+++..||.+..
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn- 344 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN- 344 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-
Confidence 4688999999999999999999999999999999999888775 45678999999999999999999999999998763
Q ss_pred CcceeEEeccC-CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 299 NYDCKHTLKDH-TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 299 ~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
......+- ...|.+++..+||+++++.+.|..|++++.++......+. ...+|++++++.||+++++.-.
T Consensus 345 ---~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis------e~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 345 ---ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS------EEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred ---hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc------ccCceeEEEEcCCCcEEEEEcc
Confidence 22222222 2469999999999999999999999999998776554442 2368999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCC--CeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669 378 EALVKIWDVKSQANVAKFDGHVG--AVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~ 453 (504)
+..|++||+...+.+..+.||.. .+..-+|-- |..++++|++|+ |+||+..+++++..+.+| ...|++++|+|.
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~ 493 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPA 493 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCC
Confidence 99999999999999999999865 344455654 558999999999 999999999999999887 679999999997
Q ss_pred CC-EEEEEeCc--EEEEEe
Q 010669 454 GS-YLAVASAD--IRVYQV 469 (504)
Q Consensus 454 g~-~l~~~~~d--i~vw~~ 469 (504)
.. .+|++|+| |+||..
T Consensus 494 ~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CHHHhhccCCCCeEEEecC
Confidence 65 56777777 999986
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.7e-27 Score=237.31 Aligned_cols=249 Identities=17% Similarity=0.282 Sum_probs=209.6
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC------------------CceEEEcccCccceeEEEEeeCCCE
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDL 279 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~l~~s~~~~~ 279 (504)
.+..|.+.|+|+.|++||++||+|++|+.|.||.... .+.+..+.+|...|..++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 3567899999999999999999999999999998762 1356778899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCCCCC
Q 010669 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-GTDGRPE 358 (504)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~ 358 (504)
|++++.|++|.|||..+. ..+..+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+....+.+... .......
T Consensus 144 lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred EEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 999999999999998775 788899999999999999999999999999999999998776666555422 1122345
Q ss_pred CeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-----CCc------------EEEEE
Q 010669 359 GYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKFDGHVGAVTAISFSE-----NGY------------YLATA 417 (504)
Q Consensus 359 ~v~~~~~~pdg~~l~~g~~----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-----~g~------------~l~s~ 417 (504)
.+..+.|+|||.+|++... -.++.|.+-.+.+.-..|.||.+++.++.|+| +.. .+|+|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 6789999999999998643 34788888878888889999999999999998 111 67889
Q ss_pred eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669 418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (504)
Q Consensus 418 ~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~ 470 (504)
+.|+ |.||.....+++..+... ....|..++|+|||..|++++.| |.++.+.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCccEEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 9998 999998777776555432 25789999999999999999999 7777774
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=235.81 Aligned_cols=232 Identities=22% Similarity=0.358 Sum_probs=192.3
Q ss_pred EEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC--------------------------------CC------
Q 010669 258 VTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE--------------------------------DG------ 298 (504)
Q Consensus 258 ~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~--------------------------------~~------ 298 (504)
.+.+. .|.+.|+++.|++||+|||+||.||.|+||.+.. ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44555 8999999999999999999999999999998544 00
Q ss_pred -------------------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669 299 -------------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 299 -------------------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (504)
...++..+.+|.+.|.++.|+ .+++|++++.|.+|++|++....++..+ .|...
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F------~Hndf 411 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVF------SHNDF 411 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEE------ecCCe
Confidence 012344577999999999999 5679999999999999999999999998 57789
Q ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669 360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437 (504)
Q Consensus 360 v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~ 437 (504)
|+|++|+| |.++|++|+-||.||||++...+.+.-..-+ .-|++++|.|||++.+.|+-+| +++|+....+....+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999 9999999999999999999877766555534 7899999999999999999999 9999999888766655
Q ss_pred cCCC------CCCeeEEEECCCCC-EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 438 SSDS------ETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 438 ~~~~------~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
...+ ...|+++.|.|... .|++.++| |+|||. ..-.++..|.|+...+.-..-.|..+|+
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~----~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG----RDKDLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec----cchhhhhhhcccccCCcceeeeEccCCC
Confidence 4332 33799999998554 35555555 999998 6678888898886666667778888876
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.2e-26 Score=190.63 Aligned_cols=248 Identities=19% Similarity=0.314 Sum_probs=200.2
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-----EEEcccCccceeEEEEeeC----CCEEEEEe-CCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTE----GDLFLTGS-ADK 287 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~s~~----~~~l~s~s-~dg 287 (504)
-.+.|++.|+|.+|+|+|.+|++|+.|.+|++...+...+ -..+.-|.+.|..++|..+ +.+|++++ .|.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3566899999999999999999999999999976543222 2356679999999999743 34666655 455
Q ss_pred cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC--CCCCCeEEEEE
Q 010669 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAAF 365 (504)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~ 365 (504)
.|.+-|...+ +..+.+.+|++-|.++- +-++-.|++|+.|.+|++||++-..++..+...... -..+.|..++.
T Consensus 164 ~iy~tdc~~g---~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 164 KIYITDCGRG---QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred eEEEeecCCC---CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 6666666665 67788899999998873 336889999999999999999998888877532111 12367999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cceeeeecCCCC
Q 010669 366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSE 442 (504)
Q Consensus 366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~~~~~~~~~~~ 442 (504)
.|.|++|++|..|....+||++.++++..|..|...|.|+.|+|...||++++.|. |++-|+... +.+.......|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk 319 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK 319 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999998 999998742 122223333446
Q ss_pred CCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 443 TPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 443 ~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
..+..+.|+|..--+++.+.| +.+|-+
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEecc
Confidence 788889999998888888888 999976
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.1e-28 Score=214.33 Aligned_cols=238 Identities=19% Similarity=0.284 Sum_probs=215.4
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
+..+|.|++|+.|...+++|+.||.|+||.+.+|.+++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+..+
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--- 338 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--- 338 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc---
Confidence 56789999999999999999999999999999999999997 89999999999999999999999999999999887
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCC
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEA 379 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg 379 (504)
+++..+.+|++.|+...|.++|.++++++.||+|++|+..+.+++.++... +...+|..+-.-| +...++++...+
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CCcccceeEEEcCCCCceEEEEcCCC
Confidence 788899999999999999999999999999999999999999999988744 4566888888888 667889999999
Q ss_pred cEEEEEcCCCceeeeeeC---CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 380 LVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
+|.|.++ .|+.+..|.. ..+...+.+.+|.|.++.+.++|+ ++.|...+|+..+++..+ ...+..++-+|..+
T Consensus 416 tv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh--EkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 416 TVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH--EKDVIGLTHHPHQN 492 (508)
T ss_pred eEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc--cccccccccCcccc
Confidence 9999998 5677777753 345677888999999999999999 999999999999988877 56788999999999
Q ss_pred EEEEEeCc--EEEEE
Q 010669 456 YLAVASAD--IRVYQ 468 (504)
Q Consensus 456 ~l~~~~~d--i~vw~ 468 (504)
.+++-++| +++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 99999999 88884
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1e-26 Score=236.48 Aligned_cols=270 Identities=20% Similarity=0.304 Sum_probs=220.7
Q ss_pred CCCCCeEEEEeccCCCEEEEEe--CCCcEEEEcCCC------------CceEEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGG--VDTNAVLFDRPS------------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD 286 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~--~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d 286 (504)
.+...|.+++.+|+|..+++|| .||.+.||+... .+.+.+...|.+.|+|+.|++||.+|++|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455699999999999999999 999999998532 23456677899999999999999999999999
Q ss_pred CcEEEEeCCC------C---------CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669 287 KTVRVWQGSE------D---------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (504)
Q Consensus 287 g~i~iwd~~~------~---------~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (504)
+.|.||+... . ..+++...+.+|...|..++|+|++.++++++.|++|.+||..+.+.+..+.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-- 168 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-- 168 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--
Confidence 9999998762 0 1356788899999999999999999999999999999999999998888776
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCC------CCCeEEEEEcCCCcEEEEEeCC----c
Q 010669 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENGYYLATAAHD----G 421 (504)
Q Consensus 352 ~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~g~~l~s~~~d----~ 421 (504)
+|...|..+.|.|-|++||+-+.|++|+||++.+....+.+..+ ...+..+.|||||.+|++...- .
T Consensus 169 ---~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 169 ---GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred ---cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 78899999999999999999999999999998776666665433 2367899999999999987432 2
Q ss_pred -EEEEEcCCCcceeeeecCCCCCCeeEEEECCC-------------CC----EEEEEeCc--EEEEEeeccCccceeEEE
Q 010669 422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-------------GS----YLAVASAD--IRVYQVASVKADWNCIKT 481 (504)
Q Consensus 422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~-------------g~----~l~~~~~d--i~vw~~~~~~~~~~~i~~ 481 (504)
+.|.+-.+.+.-..+-+| ..++.++.|+|. .. .+|+|+.| +.||.. ..-+++..
T Consensus 246 ~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T----~~~RPl~v 319 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT----ALPRPLFV 319 (942)
T ss_pred eeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec----CCCCchhh
Confidence 888887777766777766 679999999871 11 57788888 999997 33343333
Q ss_pred ccCCCCCCceeEEEEeecCcc
Q 010669 482 FPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 482 ~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.... -...|.+|+++|+|-.
T Consensus 320 i~~l-f~~SI~DmsWspdG~~ 339 (942)
T KOG0973|consen 320 IHNL-FNKSIVDMSWSPDGFS 339 (942)
T ss_pred hhhh-hcCceeeeeEcCCCCe
Confidence 2221 1348999999999853
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.2e-26 Score=202.48 Aligned_cols=267 Identities=18% Similarity=0.229 Sum_probs=210.6
Q ss_pred cccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCC-CceE-EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669 218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~ 294 (504)
+.....+.|.+++||| ...++++|+.||+|++|++.. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 3445567899999999 556777999999999999986 3332 344579999999999999999999999999999999
Q ss_pred CCCCCcceeEEeccCCcCeEEEEEccCCC--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
.++ ....+..|.++|..+.|-+... .|++||.|++|++||.+....+..+.. +..+.++..- ..++
T Consensus 102 ~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------PeRvYa~Dv~--~pm~ 169 (347)
T KOG0647|consen 102 ASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------PERVYAADVL--YPMA 169 (347)
T ss_pred cCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec------cceeeehhcc--Ccee
Confidence 985 3455678999999999987665 899999999999999999988888763 2345555443 4578
Q ss_pred EEEeCCCcEEEEEcCCCceeeee-e-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cceeeeecCCC------
Q 010669 373 GTGTSEALVKIWDVKSQANVAKF-D-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDS------ 441 (504)
Q Consensus 373 ~~g~~dg~I~iwd~~~~~~~~~~-~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~~~~~~~~~~------ 441 (504)
+++..+..|.+|+++++...... . .-.-.+.||+...|....+.|+-.| +.+..+..+ +.-.+|+.|..
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 88899999999999876433211 1 1234688998888877778888887 777777665 33445555542
Q ss_pred -CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 442 -ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 442 -~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
-..|++|+|+|.-..|+++|.| ..+||- .....+++.+.| ..+|++.+|..+|.+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk----dar~kLk~s~~~--~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK----DARTKLKTSETH--PQPITCCSFNRNGSI 307 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecc----hhhhhhhccCcC--CCccceeEecCCCCE
Confidence 2357889999998999999888 999996 456667888888 889999999999976
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.6e-28 Score=217.25 Aligned_cols=242 Identities=17% Similarity=0.313 Sum_probs=201.7
Q ss_pred ccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 219 HKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
..+|.++|.|++=+|.. ..+++|+.||.|++||+.+..+..+++.|.+.|..+++.. ..+++++.|.+|+.|.+...
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 37899999999999977 7899999999999999999999999999999999999975 67899999999999974321
Q ss_pred --------------------------C---------CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCC
Q 010669 298 --------------------------G---------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS 341 (504)
Q Consensus 298 --------------------------~---------~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~ 341 (504)
+ ...++..+.-..+.|.++.|+|.. ..|++|+.|+.|.+||++.
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 0 001222333334567788888855 4677778999999999999
Q ss_pred CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669 342 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHD 420 (504)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d 420 (504)
+.++..+.. ...-+.++|+|.+-.|.+|++|..++.||++.. .++..+.+|.++|.++.|||.|.-+++|+.|
T Consensus 220 ~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 220 ASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred CCccceeee------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 988877752 235678999998889999999999999999875 5788889999999999999999999999999
Q ss_pred c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 421 ~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
. |+||..+.+..-..+... .-..|.++.|+.|.+|+++||+| |++|.-
T Consensus 294 ksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7 999999887654444332 24579999999999999999999 999986
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=210.71 Aligned_cols=244 Identities=23% Similarity=0.343 Sum_probs=206.5
Q ss_pred eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
..++.+|...|+.+.|+++...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.|++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 34678899999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred CCCCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 296 EDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 296 ~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
++ ..+..... ..-.+++.+|||||..|.+|+.||.++|||+.++.....+. +|.++|..++|+.+|-+|+
T Consensus 334 ~g---~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-----ght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 334 SG---SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-----GHTGPVKAISFSENGYWLA 405 (506)
T ss_pred CC---cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----CCCCceeEEEeccCceEEE
Confidence 86 33333322 22458999999999999999999999999999988766664 7899999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCC-CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC--CCcceeeeecCCCCCCeeEEE
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG-VKLWDLR--KLKNFRSFESSDSETPTNSVD 449 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~--~~~~~~~~~~~~~~~~v~~i~ 449 (504)
+++.|+.|++||+|..+...++... ...+.++.|.+.|.+|+.++.+- |++++-. ...++..+. .+.+..+.+.
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~ 483 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVR 483 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceee
Confidence 9999999999999998877777543 23799999999999999996664 6666533 333444443 3356788999
Q ss_pred ECCCCCEEEEEeCc--EEEEEe
Q 010669 450 FDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 450 ~~~~g~~l~~~~~d--i~vw~~ 469 (504)
|....++++++|.| +++|.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 99999999999999 777654
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.3e-26 Score=200.02 Aligned_cols=265 Identities=17% Similarity=0.238 Sum_probs=207.7
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
+....+..|+++.|+|.++.|++++.||.+++|+.........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 344456789999999999999999999999999998876666665 899999999986 557999999999999999984
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
....+..|..+|.||.+.+....+++||.|++|++||.+.......+. ....|.|+... |+.|++|+.
T Consensus 86 ----~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d------~~kkVy~~~v~--g~~LvVg~~ 153 (323)
T KOG1036|consen 86 ----NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD------QGKKVYCMDVS--GNRLVVGTS 153 (323)
T ss_pred ----cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc------cCceEEEEecc--CCEEEEeec
Confidence 345567899999999999989999999999999999999744443332 22367776665 678999999
Q ss_pred CCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----cceeeeecCCC-------CC
Q 010669 378 EALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDS-------ET 443 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----~~~~~~~~~~~-------~~ 443 (504)
+..|.+||+|+........ .-...+.|+++.|++.-+++++-+| |.+=.+... ..-..|+.|.. ..
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 9999999999876543222 2345789999999887778888887 554333332 22233443321 24
Q ss_pred CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
+|++++|+|--+.+++||.| |.+||. .+.+.+..|... ...|.+++|+.+|..
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~----~~rKrl~q~~~~--~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDL----FNRKRLKQLAKY--ETSISSLSFSMDGSL 288 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccC----cchhhhhhccCC--CCceEEEEeccCCCe
Confidence 78999999999999999999 999998 566667777654 678999999999864
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.8e-25 Score=185.80 Aligned_cols=266 Identities=19% Similarity=0.291 Sum_probs=205.2
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCC------CC---------ceEEEcccCccceeEEEEeeCCCEEEEEeCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRP------SG---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~------~~---------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg 287 (504)
...|.+++|+|.|.+.++|+...+++|.-.. .+ -..+.-+.|.+.|.|.+|+|+|.++++|+.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 3579999999999999999999998887432 11 11223457899999999999999999999999
Q ss_pred cEEEEeCCCCC--CcceeEEeccCCcCeEEEEEccC----CCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669 288 TVRVWQGSEDG--NYDCKHTLKDHTAEVQAVTVHAT----NKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360 (504)
Q Consensus 288 ~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~~p~----~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 360 (504)
+|++..+.... .......+.-|.+.|..++|..+ +..+++++. |..|++-|..+|+....+. +|.+.|
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-----ghtghi 186 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-----GHTGHI 186 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-----CCcccE
Confidence 99998765431 11233456779999999999643 456776654 6788888999998887775 666667
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC--C-----CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--H-----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN 432 (504)
Q Consensus 361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--~-----~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~ 432 (504)
..+ ++-+|-+|++|+.|.+|++||++-..++.++.. | .+.|..++..|.|++|++|-.|. ..+||++.++.
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 655 333578999999999999999999888877643 2 35799999999999999999998 99999999999
Q ss_pred eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
++.+..+ ...|.++.|+|...|+++++.| |++-|+.-.-..--.+...-.| .+.+..+.+.|
T Consensus 266 iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~rwh~ 329 (350)
T KOG0641|consen 266 IQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCRWHP 329 (350)
T ss_pred eeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEEecC
Confidence 9988765 7899999999999999999999 8888873211111223344455 55555554443
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1e-25 Score=195.08 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=197.2
Q ss_pred EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669 260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (504)
Q Consensus 260 ~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (504)
.+++|..+++.+.|+.+|.+|++|+.|.+..||-..++ ..+.++.+|++.|+|++..-+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 46789999999999999999999999999999987665 788899999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEcC-------CCceeeeeeCCCCCeEEEEE
Q 010669 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVK-------SQANVAKFDGHVGAVTAISF 407 (504)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-----dg~I~iwd~~-------~~~~~~~~~~~~~~i~~l~~ 407 (504)
.+|+.+..+.. ..+|..+.|+++|++++.... .+.|.++|++ ..++...+..+.+.++.+-|
T Consensus 82 ~tGk~la~~k~------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 82 ETGKQLATWKT------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred CCCcEEEEeec------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 99999998863 367999999999998888764 3679999998 34567788888899999999
Q ss_pred cCCCcEEEEEeCCc-EEEEEcCCCccee-eeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669 408 SENGYYLATAAHDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (504)
Q Consensus 408 s~~g~~l~s~~~d~-v~vwd~~~~~~~~-~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~ 483 (504)
.|-+.+|++|.++| |..||++++..+. +...| ...|+.+.++++..++++++.| -++||+ .+..++++|.
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~FiT~s~Dttakl~D~----~tl~v~Kty~ 229 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYFITGSKDTTAKLVDV----RTLEVLKTYT 229 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccCCcceEEecccCccceeeec----cceeeEEEee
Confidence 99999999999999 9999999986543 33444 6699999999999999999999 999999 7899999997
Q ss_pred CCCCCCceeEEEEeec
Q 010669 484 DLSGTGAASFLFLFVL 499 (504)
Q Consensus 484 ~h~~~~~v~~l~~~~~ 499 (504)
. ..+|.+.+++|.
T Consensus 230 t---e~PvN~aaisP~ 242 (327)
T KOG0643|consen 230 T---ERPVNTAAISPL 242 (327)
T ss_pred e---cccccceecccc
Confidence 7 678999988884
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.4e-26 Score=209.01 Aligned_cols=237 Identities=21% Similarity=0.309 Sum_probs=199.3
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
..|...|.+++.++||+||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-- 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-- 276 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence 478889999999999999999999999999999999999999999999999999887788999999999999999875
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
..+.++.+|.+.|.+|....-++.+-+|+.|+++++|++.....+. +. ++...+-|++|-.+. .|++|+.+|
T Consensus 277 -s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli-fr-----g~~~sidcv~~In~~-HfvsGSdnG 348 (479)
T KOG0299|consen 277 -SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI-FR-----GGEGSIDCVAFINDE-HFVSGSDNG 348 (479)
T ss_pred -HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee-ee-----CCCCCeeeEEEeccc-ceeeccCCc
Confidence 5667788999999999988778888888899999999995443322 22 556789999998754 589999999
Q ss_pred cEEEEEcCCCceeeeeeC-C-----------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----cceeeeecCCCC
Q 010669 380 LVKIWDVKSQANVAKFDG-H-----------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSE 442 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~-~-----------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----~~~~~~~~~~~~ 442 (504)
.|.+|++-..+++.+... | ...|++++..|...++++|+.+| |++|-+..+ .++..+. ..
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~ 425 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LV 425 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cc
Confidence 999999999888877642 2 23799999999999999999999 999998766 3334443 36
Q ss_pred CCeeEEEECCCCCEEEEEeCc----EEEEEe
Q 010669 443 TPTNSVDFDHSGSYLAVASAD----IRVYQV 469 (504)
Q Consensus 443 ~~v~~i~~~~~g~~l~~~~~d----i~vw~~ 469 (504)
+.|++++|+++|.++++|... .+-|-.
T Consensus 426 GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred cEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 789999999999977777544 555544
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.3e-26 Score=211.07 Aligned_cols=225 Identities=25% Similarity=0.405 Sum_probs=197.8
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC------
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE------ 296 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~------ 296 (504)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|.++..+.+|-..|+|+.|+.||.+|++||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~ 374 (504)
.....+.+.+..|+-+|+++...+. ..+++++|.|.++++||+..+..+..+. .+..+.+++.+|-+..+++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEcccccEEEe
Confidence 2245678889999999999998765 4689999999999999999999888875 3468999999999999999
Q ss_pred EeCCCcEEEEEcCCC----------------ceeeeeeCCCC--CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669 375 GTSEALVKIWDVKSQ----------------ANVAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 435 (504)
Q Consensus 375 g~~dg~I~iwd~~~~----------------~~~~~~~~~~~--~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~ 435 (504)
|+.+|.|.+.++... ..+..+.+|.+ +|+|++++-||.+|++|+.|| |.|||+.+.+++++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 999999999887432 23456778888 999999999999999999999 99999999999988
Q ss_pred eecCCCCCCeeEEEECCCCC
Q 010669 436 FESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 436 ~~~~~~~~~v~~i~~~~~g~ 455 (504)
+... .++|+.+.+.|-.+
T Consensus 315 l~~~--kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 315 LQTS--KGPVTNLQINPLER 332 (476)
T ss_pred Hhhh--ccccceeEeecccc
Confidence 8743 67899998866433
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-26 Score=225.20 Aligned_cols=262 Identities=20% Similarity=0.321 Sum_probs=207.9
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEccc---CccceeEEEEee-CCCEEEEEeCCCcEEEEeC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSG---HSKKVTSVKFVT-EGDLFLTGSADKTVRVWQG 294 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~---h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~ 294 (504)
+....+|..+++-..++.++.. .+.||.+... ++...+.. -.-.+..|.|.. +.++|++++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 4457788888988888888754 6777765432 22222221 112356788875 5678999999999999999
Q ss_pred CCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEE
Q 010669 295 SEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLIL 372 (504)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l 372 (504)
.....-..+..|..|...+++++||+. .++|++||.||+|++||++..+....+. +....|..+.|+| .+..|
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-----~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-----SNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----ccchhhhceeeccCCCceE
Confidence 874333566678899999999999985 5689999999999999999988877776 4557899999999 88999
Q ss_pred EEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc--eeeeecCCCCCCeeEE
Q 010669 373 GTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSDSETPTNSV 448 (504)
Q Consensus 373 ~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i 448 (504)
+++...|.+++||+|.. ++...+..|.++|.|+.|+||+.+||+|+.|+ |+|||+.+.+. ..++.. ..++.++
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---iapv~rV 269 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---IAPVGRV 269 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee---cceeeee
Confidence 99999999999999976 56778889999999999999999999999998 99999986554 333433 5789999
Q ss_pred EECCCCCE-EEEEeC--c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 449 DFDHSGSY-LAVASA--D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 449 ~~~~~g~~-l~~~~~--d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
.|-|..++ |++++. | |+|||+ .+.+-+..+|..| ...++.+++-.
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDv---rRPYIP~~t~~eH--~~~vt~i~W~~ 319 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDV---RRPYIPYATFLEH--TDSVTGIAWDS 319 (839)
T ss_pred eeccCccchhhhhhccccceEEEEee---ccccccceeeecc--CccccceeccC
Confidence 99998766 444432 3 999999 5778889999998 77777776643
No 101
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.5e-27 Score=231.63 Aligned_cols=236 Identities=25% Similarity=0.425 Sum_probs=214.7
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
..|...|.++..-..++.+++|+.|-.+-+|.......+..|.+|..+|.++.|+++..+|++|+.+|+|++||++..
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-- 102 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-- 102 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--
Confidence 356677888887677889999999999999998777777789999999999999999999999999999999999986
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
..++++.+|...+..+.|||-+.++++|+.|+.+++||++...+...+. +|...+.++.|+|+|++++.|++|.
T Consensus 103 -k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 103 -KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----SHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred -hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-----CCcceeEEEeecCCCceeeccCCcc
Confidence 6778999999999999999999999999999999999999888888775 5778899999999999999999999
Q ss_pred cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~ 458 (504)
.++|||...|+.+..|.+|.+.+..+.|+|...++++|+.|. |++||+++...+-..... ...|.+..|+|++..++
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeee
Confidence 999999999999999999999999999999999999999998 999999988777666554 57899999999999999
Q ss_pred EEeCc-EE
Q 010669 459 VASAD-IR 465 (504)
Q Consensus 459 ~~~~d-i~ 465 (504)
+|... +.
T Consensus 255 ~G~q~sl~ 262 (825)
T KOG0267|consen 255 SGEQISLS 262 (825)
T ss_pred cCchhhhh
Confidence 88776 44
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=6.1e-25 Score=189.65 Aligned_cols=232 Identities=20% Similarity=0.288 Sum_probs=202.4
Q ss_pred ccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 219 HKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
..+|.+.|-.++|+|. .+++++++.|.+|++||...+++...+....+ -.-+.|+|+|.+++.++.|..|.+.|.++.
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 5678888999999885 56999999999999999999999888774444 455789999999999999999999998774
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
+..... .....+.-++|+-++++|+.....|+|.|...-.-+++..+. .|+....|+.|+|+|++||+|+.
T Consensus 139 ---~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-----AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 139 ---KIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-----AHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred ---ceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-----cCCcceEEEEECCCCceEeeccc
Confidence 333322 345668889999888888877778999999988888877776 78889999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
|..+.+||+...-+++.+..+.-+|..++||.||++||++++|- |-|=++.+|..+..++. .++...++|+|...+
T Consensus 210 DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 210 DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRPL 286 (313)
T ss_pred cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---cCCceeEEecCCCce
Confidence 99999999999989999998999999999999999999999998 99999999998888865 578999999999999
Q ss_pred EEEEeCc
Q 010669 457 LAVASAD 463 (504)
Q Consensus 457 l~~~~~d 463 (504)
||.++.|
T Consensus 287 LAyA~dd 293 (313)
T KOG1407|consen 287 LAYACDD 293 (313)
T ss_pred eeEEecC
Confidence 9998877
No 103
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-24 Score=191.09 Aligned_cols=277 Identities=21% Similarity=0.358 Sum_probs=211.1
Q ss_pred eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee--CCCEEEEEeCCCcE
Q 010669 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTV 289 (504)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i 289 (504)
.++..+|.+-|.++.|++.|+.+|+++.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 4567789999999999999999999999999999996433 45667789999999999964 68899999999999
Q ss_pred EEEeCCC------CCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeec--------CCC
Q 010669 290 RVWQGSE------DGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSD--------AGT 353 (504)
Q Consensus 290 ~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~ 353 (504)
.||.-.. +..+....++....+.|+++.|.|. |-.+++++.||.++||+.-....+..... ...
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9997421 1234556677778889999999984 66899999999999998754333222211 112
Q ss_pred CCCCCCeEEEEECC---CCCEEEEEeCC-----CcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCC-C---cEEEEE
Q 010669 354 DGRPEGYTSAAFHP---DGLILGTGTSE-----ALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN-G---YYLATA 417 (504)
Q Consensus 354 ~~~~~~v~~~~~~p---dg~~l~~g~~d-----g~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~-g---~~l~s~ 417 (504)
..+.....|+.|+| ...+|++|+.+ +.+.||....+ ..+.++.+|..+|+.|+|.|+ | ..|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 23556788999998 45688888876 57889877543 346677889999999999996 2 578999
Q ss_pred eCCcEEEEEcCCCc-----------------ceeeee-cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce
Q 010669 418 AHDGVKLWDLRKLK-----------------NFRSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN 477 (504)
Q Consensus 418 ~~d~v~vwd~~~~~-----------------~~~~~~-~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~ 477 (504)
+.|||+||.++... .+..+. ..+|++.|+.+.|+-.|..|++.|.| +++|..+- ...|+
T Consensus 246 ~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany-~n~~k 324 (361)
T KOG2445|consen 246 TKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY-NNLWK 324 (361)
T ss_pred ecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh-hhhhe
Confidence 99999999987311 112222 34458899999999999999999999 99997543 35688
Q ss_pred eEEEccCCCCCCceeEEEE
Q 010669 478 CIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 478 ~i~~~~~h~~~~~v~~l~~ 496 (504)
|...+.. ++.++...|
T Consensus 325 C~sv~~~---e~~~~~~~~ 340 (361)
T KOG2445|consen 325 CTSVLKA---EGSVTKPDF 340 (361)
T ss_pred eeeEEec---cCCCCCccc
Confidence 8887765 344444433
No 104
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2e-25 Score=209.28 Aligned_cols=255 Identities=20% Similarity=0.221 Sum_probs=194.9
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE------------cccCccceeEEEEeeCC-CEEEEEeCCCcE
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT------------LSGHSKKVTSVKFVTEG-DLFLTGSADKTV 289 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i 289 (504)
...|.++.|++.|+.|++.+.....+|+|....+.+.. -+||...++|.+|+|+. ..+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 44799999999999998888889999999765444332 34899999999999954 479999999999
Q ss_pred EEEeCCCCCCcceeEEec-----cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC--CeEE
Q 010669 290 RVWQGSEDGNYDCKHTLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE--GYTS 362 (504)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~v~~ 362 (504)
+|||+..... ....+. +..-+++.++|+++|+.|++|+.||.|.+||..+......+.. ...|.. .|+|
T Consensus 294 RiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~g~~Its 369 (641)
T KOG0772|consen 294 RIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLPGQDITS 369 (641)
T ss_pred EEEecCCchh--heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCCCCceeE
Confidence 9999986532 222222 3345789999999999999999999999999854332222211 124444 8999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCC--CCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCCCcc
Q 010669 363 AAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGH--VGAVTAISFSENGYYLATAAHD------G-VKLWDLRKLKN 432 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~~~~ 432 (504)
+.|++||++|++-+.|+++++||+++. +++....+- ..+-+.++|||+.++|++|+.- + +.+||..+...
T Consensus 370 i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred EEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 999999999999999999999999986 455555442 3466889999999999999642 4 99999999999
Q ss_pred eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669 433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483 (504)
Q Consensus 433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~ 483 (504)
++.+... ...|..+.|+|.-+.|++|+.| ++||-=...+..+..+....
T Consensus 450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k 500 (641)
T KOG0772|consen 450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVK 500 (641)
T ss_pred EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECccccccchhheeec
Confidence 9988876 6789999999998888888877 66653222233344444433
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8e-25 Score=193.86 Aligned_cols=273 Identities=21% Similarity=0.299 Sum_probs=203.1
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-----EEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEE
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRV 291 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~i 291 (504)
..++|...|++++|+.||++|++++.|+.|++|++.+... ++. .-.-+..+.+.|.||.+- ++++-...++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4678999999999999999999999999999999876321 111 111234688999998775 455556678999
Q ss_pred EeCCCC--CCcce-------eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669 292 WQGSED--GNYDC-------KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 292 wd~~~~--~~~~~-------~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (504)
|.+... +.+.. ...-..|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+.. ....-+.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-----nq~~n~~ 233 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-----NQSSNYD 233 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-----ccccccc
Confidence 976432 11110 01112355566677777778999999999999999999 777777652 2345677
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEc---CCC-----ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC----
Q 010669 363 AAFHPDGLILGTGTSEALVKIWDV---KSQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK---- 429 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg~I~iwd~---~~~-----~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~---- 429 (504)
.+.+|+|+++++++..--|++|.+ +.| ..+..++||...|..++|+++...+++.+.|| +++||+.-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 899999999999999999999987 233 34677899999999999999999999999999 99999752
Q ss_pred ---Ccceeeee--cCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 430 ---LKNFRSFE--SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 430 ---~~~~~~~~--~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.+.++... .+...+....+.++|+|+.|+.+... +++|.. ..++..-.+..- +.+.|++++|.++|+.
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s----e~g~~~~~~e~~-h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS----EDGKDYPELEDI-HSTTISSISYSSDGKY 387 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc----ccCccchhHHHh-hcCceeeEEecCCCcE
Confidence 12222221 22224455689999999999988666 999997 445555555432 3789999999999974
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=217.14 Aligned_cols=262 Identities=18% Similarity=0.232 Sum_probs=213.2
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
..+|..+.+.++|.|+|++|++++.||.|++|+.... +...++..+...|.+++. ++.+|++|+.+++|.+|.+..+
T Consensus 9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 4578889999999999999999999999999987655 444555557778888876 5668999999999999998876
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
..... +...+-++.+++|+.+|++++.||.|-.|++.++........+. +|..+|.++.|+|.+++||+.+-
T Consensus 87 ~~~~i---L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-----gh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 87 EEDTI---LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-----GHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred Cccce---eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-----ccCCceeeeeEcCCCCEEEEEec
Confidence 32223 33445789999999999999999999999999999887777776 78899999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeC--------CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669 378 EALVKIWDVKSQANVAKFDG--------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i 448 (504)
||.|+|||+.++....++.+ ....+..++|+|+|..|+..+.|+ |++|+...+.....+....+...+..+
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 99999999999877666543 134577899999966666666665 999999999888888766555669999
Q ss_pred EECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 449 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 449 ~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
.|+|.|.|||+++.+ |.|||+++ ..-|.....|++++|-|++
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t----------~~~~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT----------HERHEFKRAVCCEAWKPNA 282 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc----------chhccccceeEEEecCCCC
Confidence 999999999999998 99999842 1113334567777776654
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6e-25 Score=194.41 Aligned_cols=251 Identities=18% Similarity=0.269 Sum_probs=196.0
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (504)
..|+.|++.|.+||+|..||.|.|||+.+...-+.+.+|..+|.+++||++|+.|+++|.|..|.+||+..+ .+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g---s~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG---SPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC---CceeE
Confidence 789999999999999999999999999999888899999999999999999999999999999999999986 45665
Q ss_pred eccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669 306 LKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (504)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw 384 (504)
+. ..++|+...|||... .++++-.+..-.+.++..+.....-. ......+..-.+..|++.|+++++|...|.+.+|
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-CCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 54 568999999999543 44444344445555555432221111 1111112233455799999999999999999999
Q ss_pred EcCCCceeeeeeCCC-CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc---------eeeeecCCCCCCeeEEEECCC
Q 010669 385 DVKSQANVAKFDGHV-GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------FRSFESSDSETPTNSVDFDHS 453 (504)
Q Consensus 385 d~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~---------~~~~~~~~~~~~v~~i~~~~~ 453 (504)
|..+.+++..++-.. ..|..+.|+..|.+|+.-+.|. |+.|+++.... .+.+...-+...-.+++|+.+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999999998887655 7899999999999999999998 99999873211 112211112345578999999
Q ss_pred CCEEEEEeCc---EEEEEeeccCccceeEEEccCC
Q 010669 454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 454 g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h 485 (504)
|.|+++++.. ++||.- ..+.+++.+.|.
T Consensus 261 geYv~a~s~~aHaLYIWE~----~~GsLVKILhG~ 291 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEK----SIGSLVKILHGT 291 (405)
T ss_pred ccEEEeccccceeEEEEec----CCcceeeeecCC
Confidence 9999999876 999996 678888888776
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-24 Score=191.63 Aligned_cols=240 Identities=21% Similarity=0.327 Sum_probs=201.5
Q ss_pred CCCCeEEEEeccCCCEEEEEeC--CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
++-+|..++|....+.++.++. |.+|+..++.+.+.++.+.||...|++++.+|-++.+++++.|++|++||++..
T Consensus 55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-- 132 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-- 132 (311)
T ss_pred ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC--
Confidence 3447888888877777777766 889999999999999999999999999999998899999999999999999864
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
.+...+.. ..-..++|.|.|-++|++.....|++||++.- .+...+.. ..+.....+.+.|+|||++++.++.
T Consensus 133 -~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 133 -KCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred -CCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc--CCCCccceeeeEEcCCCCEEEEEeC
Confidence 44444432 23345789999999999998889999999864 22333321 1134567899999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCe---EEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAV---TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i---~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~ 453 (504)
.+.+++.|.-+|....++.++...- -..+|+||++++++|+.|| |.+|+++++..+..+... +.+++.++.|.|.
T Consensus 208 ~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPR 286 (311)
T ss_pred CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCc
Confidence 9999999999999988887765432 5788999999999999999 999999999999998875 4688999999999
Q ss_pred CCEEEEEeCcEEEEEe
Q 010669 454 GSYLAVASADIRVYQV 469 (504)
Q Consensus 454 g~~l~~~~~di~vw~~ 469 (504)
-..+++++..+.+|-.
T Consensus 287 ~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 287 YAMFVSASSNLVFWLP 302 (311)
T ss_pred eeeeeecCceEEEEec
Confidence 9999999888999975
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.2e-25 Score=208.23 Aligned_cols=264 Identities=16% Similarity=0.278 Sum_probs=217.4
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEccc--CccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSG--HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~--h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
.|..-|.++.+|...+.++||+ .|.|+|||+... ..+..+.. ....|.++.++|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4667788899999999999988 567999998643 23344432 34678999999999999999999999999997
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
... ......+....-...+++.+||.+..+++..||.|.|||+.+...+..+. +|...+.|+.+++||..|.+|
T Consensus 496 apT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----GhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 496 APT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred CCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----CCCCCceeEEecCCCceeecC
Confidence 642 22333333334567889999999999999999999999999998888876 888999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g 454 (504)
+-|++||.||++.++.+.... ..+.|.++..+|++.||++|-+++ |.|-...+.. .+..+-|...|.++.|.+.|
T Consensus 570 GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccC
Confidence 999999999999998776654 457899999999999999999988 8887766543 34445557899999999999
Q ss_pred CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
+++++.|.| +..|.. .-+..+...+. .+.|++++++.+.+.
T Consensus 646 kwfvStGkDnlLnawrt----PyGasiFqskE---~SsVlsCDIS~ddky 688 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRT----PYGASIFQSKE---SSSVLSCDISFDDKY 688 (705)
T ss_pred ceeeecCchhhhhhccC----ccccceeeccc---cCcceeeeeccCceE
Confidence 999999988 999997 56777776665 689999999988753
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.1e-26 Score=223.79 Aligned_cols=246 Identities=23% Similarity=0.414 Sum_probs=217.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEE
Q 010669 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA 315 (504)
Q Consensus 236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 315 (504)
.+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+... ..+..+.+|.++|.+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIES 75 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCccee
Confidence 344555556667788763 34568888888888667889999999999999987654 566678999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 010669 316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395 (504)
Q Consensus 316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~ 395 (504)
+.|+++..+|+.|+.+|+|++||++..+.+..+. +|...+..+.|+|-+.+++.|+.|+.+.+||.+...+.+.+
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhh-----ccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 9999999999999999999999999998887765 77888999999999999999999999999999998999999
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 472 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~ 472 (504)
.+|...|..+.|+|+|.|+++|++|. ++|||+..++....|..+ ...+..+.|+|..-.++.||.| +++||+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl--- 225 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDL--- 225 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc--cccccccccCchhhhhccCCCCceeeeecc---
Confidence 99999999999999999999999988 999999999999999876 6789999999999999999999 999999
Q ss_pred CccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669 473 KADWNCIKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 473 ~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
+++..+...... ...|.+..|.++|.+.
T Consensus 226 -etfe~I~s~~~~--~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 226 -ETFEVISSGKPE--TDGVRSLAFNPDGKIV 253 (825)
T ss_pred -ceeEEeeccCCc--cCCceeeeecCCceee
Confidence 778888887765 7899999999999763
No 111
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=194.69 Aligned_cols=245 Identities=18% Similarity=0.332 Sum_probs=186.8
Q ss_pred CCCCCeEEEEeccCC--CEEEEEeCCCcEEEEcCCC----------------CceEEEcccCccceeEEEEeeC-CCEEE
Q 010669 221 TSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPS----------------GQIVTTLSGHSKKVTSVKFVTE-GDLFL 281 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~--~~l~sg~~dg~i~vwd~~~----------------~~~~~~~~~h~~~v~~l~~s~~-~~~l~ 281 (504)
.|.+.+..+..++-+ .+.++-+..|.|+||++.. .+.+.++.+|.+.=..++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 355566666666644 4667778899999999642 2457788899999999999992 23488
Q ss_pred EEeCCCcEEEEeCCCCCCcce-eEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669 282 TGSADKTVRVWQGSEDGNYDC-KHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (504)
+|..-+.|++|...+ +.+.. ...+.+|+..|-.++|+|.. ..|++||.||+|+|||++.+.....+.. ..|...
T Consensus 229 sGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNSD 304 (440)
T ss_pred cCccccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCCc
Confidence 888889999999887 33332 34566899999999999964 5899999999999999999854443332 377889
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCC---CceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcc--
Q 010669 360 YTSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN-- 432 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~-- 432 (504)
|+.+.|+.+-.+||+|+.||+++|||+|+ ++++..|+-|..+|++|.|+|. ...|++++.|. |.+||+.-..-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999999888999999999999999986 5688999999999999999995 45666666676 99999863211
Q ss_pred --------------eeeeecCCCCCCeeEEEECCCC-CEEEEEeCc-EEEEEe
Q 010669 433 --------------FRSFESSDSETPTNSVDFDHSG-SYLAVASAD-IRVYQV 469 (504)
Q Consensus 433 --------------~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d-i~vw~~ 469 (504)
.+.+..|.....+..+.|++.- .+|++.+.| +.||..
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 1122223335678889999864 466666666 888763
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=5.5e-24 Score=206.46 Aligned_cols=267 Identities=19% Similarity=0.263 Sum_probs=211.3
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE---EEcccCccceeEEEEeeC-----------CCEEEEEeCCCcE
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV---TTLSGHSKKVTSVKFVTE-----------GDLFLTGSADKTV 289 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~l~~s~~-----------~~~l~s~s~dg~i 289 (504)
+...++.|++....|.+...|..++|||+.+-..+ ..+-.|...|+++.--|. ...+++++.|++|
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 45668889999999999999999999998764432 334458888888876541 1248999999999
Q ss_pred EEEeCCCCCCccee----------------------------------EEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669 290 RVWQGSEDGNYDCK----------------------------------HTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (504)
Q Consensus 290 ~iwd~~~~~~~~~~----------------------------------~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (504)
++||+....+.... ....+....+.+++.+|+|++|++|..-|.++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 99997652110000 00112234689999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEE-------
Q 010669 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTA------- 404 (504)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~------- 404 (504)
+||+........+. .|...|.|+.|+. ..++||+++.|..|+|||+.. ..++.++.+|...|++
T Consensus 485 Vy~Lq~l~~~~~~e-----AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 485 VYDLQELEYTCFME-----AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred EEEehhhhhhhhee-----cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence 99999877666655 7889999999997 457899999999999999853 3444555555444444
Q ss_pred ------------------------------------------EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-
Q 010669 405 ------------------------------------------ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD- 440 (504)
Q Consensus 405 ------------------------------------------l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~- 440 (504)
++..|+..++++++.|. |+|||+.+++..+.|++..
T Consensus 560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD 639 (1080)
T ss_pred CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence 45566777889999997 9999999999999998743
Q ss_pred CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 441 SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 441 ~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+.+....+..+|+|.||++.+.| +.+||+ .+++++.+..|| ...||++.|.+|.+
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df----~sgEcvA~m~GH--sE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDF----VSGECVAQMTGH--SEAVTGVKFLNDCK 696 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEe----ccchhhhhhcCc--chheeeeeecccch
Confidence 45778899999999999999988 999999 789999999999 88999999998864
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-24 Score=197.01 Aligned_cols=266 Identities=17% Similarity=0.269 Sum_probs=214.9
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--CceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~ 298 (504)
..++|+++.|+|...+|++++.||.+++|.+.. ...+..+.--..+|.+.+|.|+|. .+++++....+..||+.+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 357899999999999999999999999998753 344666666678899999999999 89999999999999998743
Q ss_pred CcceeEEeccCC-cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 299 NYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 299 ~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
...+....++. ..+.....+|++++|+..+..|.|.+.-..+++.+..+.. .+.+..++|+.||+.|++++.
T Consensus 292 -~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki------eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 292 -VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI------EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred -cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee------ccEEeeEEEecCCcEEEEEcC
Confidence 23344444544 3567788899999999999999999999999988887763 357999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCC-CeEEEEEcCCCcEEEEEeCCc-EEEEEcCC------CcceeeeecCCCCCCeeEEE
Q 010669 378 EALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK------LKNFRSFESSDSETPTNSVD 449 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~------~~~~~~~~~~~~~~~v~~i~ 449 (504)
+|.|.+||++...+++.|....+ .-++++.+++|.|||+|++.| |.|||..+ .+++..+... ...|+++.
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~ 442 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQ 442 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeee
Confidence 99999999999999999874322 235677789999999999999 99999653 2344444433 56899999
Q ss_pred ECCCCCEEEEEeCc----EEEEEeeccCccceeEEEccCCC-CCCceeEEEEeecC
Q 010669 450 FDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDLS-GTGAASFLFLFVLG 500 (504)
Q Consensus 450 ~~~~g~~l~~~~~d----i~vw~~~~~~~~~~~i~~~~~h~-~~~~v~~l~~~~~g 500 (504)
|++++++|+.++.. +++-.+ .+......|+.-. .-+.|+||+|+|.|
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHv----PS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHV----PSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred eCcchhhhhhhhhccccceEEEec----cceeeeccCCCCCCcccceEEEEecCCC
Confidence 99999999998864 888887 5566666665431 24679999999965
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=185.78 Aligned_cols=241 Identities=16% Similarity=0.237 Sum_probs=197.1
Q ss_pred EEEEeCCCcEEEEcCCCC------------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669 238 IATGGVDTNAVLFDRPSG------------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 238 l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (504)
|++|++...|.-+++.-. ..+..+..|.++|++++. ++.++++||.|-+|+|||+... .....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcc
Confidence 556666665555544211 224566789999999999 6899999999999999999876 55667
Q ss_pred eccCCcCeEEEEEccCCC--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010669 306 LKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383 (504)
Q Consensus 306 ~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~i 383 (504)
+..|.+.|+++.|.+.-. .|++|+.||.|.+|+.....++..+. +|...|+.++.||.|++.++.+.|+.++.
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----ccccccceeEecCCCceEEEEcCCceeee
Confidence 778999999999998654 89999999999999999998888887 77788999999999999999999999999
Q ss_pred EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
||+-.|+.-..++- ...-+.+.|+|.|.+++.+..++|-+|.+.+......+..+ ..+.++.|. ++.+|++|++|
T Consensus 154 WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCC
Confidence 99988876655542 22334599999999999999999999999988777766553 457777775 56778888887
Q ss_pred --EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 464 --IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 464 --i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
|++||- ....+...|.+| ++.|-++.++.+
T Consensus 229 ~~i~~~D~----ds~~~~~~~~AH--~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 229 EWISLKDT----DSDTPLTEFLAH--ENRVKDIASYTN 260 (362)
T ss_pred ceEEEecc----CCCccceeeecc--hhheeeeEEEec
Confidence 999997 457888999999 889988886654
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.2e-23 Score=197.92 Aligned_cols=270 Identities=15% Similarity=0.240 Sum_probs=219.8
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-EEEcccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
+..-..++|.+++|+.+.+.||.+-.||.|.+|++..+=. ...+.++ ...|-+++|+ ++..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 4455578999999999999999999999999999987633 3344443 4679999999 45578899999999999998
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
+. +....+....+.|++++.+|.+..++.|++||.+..+++..++...... .....+.+.+++|+|++..++.|
T Consensus 99 ~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~---l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 99 TL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS---LMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred cC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee---cccccceEEEEEecCCccEEEec
Confidence 86 6677777888999999999999999999999988888888887665554 22345789999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeee--------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee
Q 010669 376 TSEALVKIWDVKSQANVAKFD--------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 446 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~--------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~ 446 (504)
+.||.|++||..++..+.... +...-|.++.|-.++ .|++|...| |.+||...+..++.+..+ ...|.
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 999999999999987766221 122357778777555 678887778 999999999999998887 67899
Q ss_pred EEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 447 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 447 ~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
+++.++++.+++++|.| +.-|......+.|........| ...|.+++.+++
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h--~hdvrs~av~~~ 302 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH--AHDVRSMAVIEN 302 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC--cccceeeeeecc
Confidence 99999999999999999 4445554444557777777777 778888888765
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-25 Score=216.15 Aligned_cols=228 Identities=19% Similarity=0.353 Sum_probs=182.6
Q ss_pred eEEEEecc-CCCEEEEEeCCCcEEEEcCCC---CceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 226 IVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 226 I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
+..|.|+. +.++||+++..|.|.+||+.. .+.+..|..|...++++.|++ ...+|++||.||+|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 44566764 467999999999999999976 566678899999999999998 5678999999999999999986
Q ss_pred ceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 301 DCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
....++.+....|.++.|+| .+++|+++.+.|.+.+||++........ ...|.++|.|+.|||++.+||+|+.|+
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k----~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK----LTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH----hhcccCceEEEeecCCCceeeecCCCc
Confidence 55666777888999999999 5779999999999999999976433222 338899999999999999999999999
Q ss_pred cEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCC-cEEEEEeCC--c-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECC
Q 010669 380 LVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG-YYLATAAHD--G-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 380 ~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d--~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~ 452 (504)
.|+|||+.+++. +.++. ...+|.++.|-|.. +.|++++.- . |+|||++..- +..++..| ...++.++|..
T Consensus 243 ~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~ 319 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDS 319 (839)
T ss_pred cEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccC
Confidence 999999986543 33333 34689999999964 567776643 3 9999998643 44555554 67889999976
Q ss_pred -CCCEEEEEeCc
Q 010669 453 -SGSYLAVASAD 463 (504)
Q Consensus 453 -~g~~l~~~~~d 463 (504)
|-..+.+++.|
T Consensus 320 ~d~~~l~s~sKD 331 (839)
T KOG0269|consen 320 GDRINLWSCSKD 331 (839)
T ss_pred CCceeeEeecCc
Confidence 34566677777
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.2e-23 Score=203.94 Aligned_cols=259 Identities=17% Similarity=0.317 Sum_probs=215.7
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE--EEcccCccceeE-EEEee-CCCEEEEEeCCCcEEEEe
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV--TTLSGHSKKVTS-VKFVT-EGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~-l~~s~-~~~~l~s~s~dg~i~iwd 293 (504)
...+|+..|..+++.+ +..++++|.||++++|+-..++.+ ..+.+|.+-|.+ ++|.+ ++-.+++|+.|++|.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 4578999998888764 458999999999999997665544 356778888877 88876 455699999999999999
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
..+. .+..++.+|...|.+++...++. +++||.|.++++|-.... ...+ .+|...|..++.-|++ .++
T Consensus 88 ~~~~---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l-----~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 88 LSQA---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSL-----QGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred cCCC---CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hccc-----CCcchheeeeeecCCC-cEE
Confidence 8776 78889999999999999877776 999999999999976543 3333 3899999999999988 899
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
+|+.|.+|++|.- ++.+.+|.+|...|..+++-+++ .+++++.|| |++|++ ++..+..+.+| ...+.++....
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecC
Confidence 9999999999974 78899999999999999999765 467788888 999999 67788777766 78899999889
Q ss_pred CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
++..++++|+| ++||+. ..+.+.+.-- .-.|.++.+.++|-+.
T Consensus 230 ~~~~Ivs~gEDrtlriW~~------~e~~q~I~lP--ttsiWsa~~L~NgDIv 274 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKK------DECVQVITLP--TTSIWSAKVLLNGDIV 274 (745)
T ss_pred CCCeEEEecCCceEEEeec------CceEEEEecC--ccceEEEEEeeCCCEE
Confidence 99999999999 999996 2666666432 4478999999888664
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1e-23 Score=204.47 Aligned_cols=233 Identities=24% Similarity=0.379 Sum_probs=200.2
Q ss_pred ccCCCCCeEE-EEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 219 HKTSKPGIVS-LDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 219 ~~~~~~~I~~-~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
..+|.+-|.+ +++.+ ++-.+++|+.|+.+.+|.+.+..++.++++|...|.|+....++. +++||.|.++++|...
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG- 130 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch-
Confidence 3445566666 77775 555799999999999999999999999999999999998776776 9999999999999764
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
++...+.+|...|+++..-|.+ .+++||.|++|++|.- ++....+. +|...|+.+++-+++. |++++
T Consensus 131 ----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-----gHtD~VRgL~vl~~~~-flScs 197 (745)
T KOG0301|consen 131 ----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-----GHTDCVRGLAVLDDSH-FLSCS 197 (745)
T ss_pred ----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-----cchhheeeeEEecCCC-eEeec
Confidence 5666789999999999999987 8999999999999975 55666665 7899999999998765 77888
Q ss_pred CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
.||.|++|++ ++..+.++.+|...|.+++...++..++++++|+ +++|+.. .+.+.+..+ ...++++.+-++|.
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD 272 (745)
T ss_pred CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC
Confidence 9999999999 8899999999999999999888889999999998 9999976 677777765 46899999999998
Q ss_pred EEEEEeCc-EEEEEeec
Q 010669 456 YLAVASAD-IRVYQVAS 471 (504)
Q Consensus 456 ~l~~~~~d-i~vw~~~~ 471 (504)
.++.||+. |+||....
T Consensus 273 Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEeccCceEEEEEecc
Confidence 87766666 99998753
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3e-23 Score=182.05 Aligned_cols=269 Identities=16% Similarity=0.310 Sum_probs=196.2
Q ss_pred cccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCc----------eEE-----EcccCccceeEEEEee-CCCEE
Q 010669 218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQ----------IVT-----TLSGHSKKVTSVKFVT-EGDLF 280 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~----------~~~-----~~~~h~~~v~~l~~s~-~~~~l 280 (504)
+.+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++.. .+. .-.+|.-.|..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567889999999988 68899999999999999987542 111 1136788899999999 66688
Q ss_pred EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC---CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC
Q 010669 281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357 (504)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 357 (504)
.+++.|.+++|||..+. +....|+ ..+.|.+-+++|- .-++++|..|-.|++-|+.+|.....+. +|.
T Consensus 118 tssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-----GHr 188 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-----GHR 188 (397)
T ss_pred ecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----ccc
Confidence 99999999999999875 4444443 4567888888883 3478888889999999999999888876 889
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCC-ceeeee--------------eCCCCCeEEEEEcCCCcEEEEEeCCc
Q 010669 358 EGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQ-ANVAKF--------------DGHVGAVTAISFSENGYYLATAAHDG 421 (504)
Q Consensus 358 ~~v~~~~~~pdg~-~l~~g~~dg~I~iwd~~~~-~~~~~~--------------~~~~~~i~~l~~s~~g~~l~s~~~d~ 421 (504)
..|.++.|+|... .|++|+.||.|++||+|.. .+...+ ..|.+.|+.++|+.+|.++++++.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9999999999554 6789999999999999764 333333 24677899999999999999999887
Q ss_pred -EEEEEcCCCcceeeeecCCCCCCeeEEEE---CCC-CCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEE
Q 010669 422 -VKLWDLRKLKNFRSFESSDSETPTNSVDF---DHS-GSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLF 495 (504)
Q Consensus 422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~---~~~-g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~ 495 (504)
+++|+..+|.....-.+......-.++++ +-+ +-++..-..+ +.++++ ..+..+..+..| -..|.+..
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~----~sgs~ir~l~~h--~k~i~c~~ 342 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNL----LEGSFVRRLSTH--LKRINCAA 342 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEc----cCceEEEeeecc--cceeeEEe
Confidence 99999998765332211111111111111 112 2222222223 777777 667788888887 55666666
Q ss_pred EeecCc
Q 010669 496 LFVLGQ 501 (504)
Q Consensus 496 ~~~~g~ 501 (504)
+-++=|
T Consensus 343 ~~~~fq 348 (397)
T KOG4283|consen 343 YRPDFE 348 (397)
T ss_pred ecCchh
Confidence 555433
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=206.34 Aligned_cols=245 Identities=19% Similarity=0.297 Sum_probs=209.8
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee---CCCEEEEEeCCCcEEEEeCCCCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---EGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
.+-+|.+++++|+|.+||+|..-|.++||++.+-+....+..|...|.|+.|+. ..++|++++.|..|.|||+..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-- 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-- 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--
Confidence 456899999999999999999999999999999888889999999999999984 346899999999999999874
Q ss_pred CcceeEEeccCCcCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
++..+.++.+|...|+++.|...| ..+++++.|+.|.+--.+.......+...........+..++..|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 467888999999999999998776 689999999987654333211111221111112345689999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeC---CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 377 SEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
.|..|+|||+.+++....|++ |.+....+...|.|.||++.+.|. +.++|+.+++++....+| ...|+.+.|.+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH--sE~VTG~kF~n 693 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH--SEAVTGVKFLN 693 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc--chheeeeeecc
Confidence 999999999999999999975 667888999999999999999997 999999999999988877 67899999999
Q ss_pred CCCEEEEEeCc--EEEEEee
Q 010669 453 SGSYLAVASAD--IRVYQVA 470 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~ 470 (504)
|.+.|++.+.| |.||.+.
T Consensus 694 DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchhheeecCCceEEEEECc
Confidence 99999999988 9999984
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.3e-24 Score=201.47 Aligned_cols=234 Identities=18% Similarity=0.280 Sum_probs=202.3
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
..-|.++.+.|||+.|++|+.-.++.|||+..... ...+....-...+++.+||.+..+++..||.|.|||+.+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--- 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--- 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---
Confidence 34688999999999999999999999999876543 2334433455778899999999999999999999999875
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~ 380 (504)
..++.|++|.+.+.||.++++|..|-+|+-|.+|+.||++.++.+.... ..+.|.++.++|.+.++++|-.++.
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd------F~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD------FSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh------hhhhheecccCCCccceeeecccCc
Confidence 7889999999999999999999999999999999999999998776553 3468999999999999999999999
Q ss_pred EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (504)
Q Consensus 381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~ 459 (504)
+.|..... ...+.+.-|.+-|.++.|.+.|+|+++.+.|+ +..|...-|..+...+. ...|.++.++.|.+|+++
T Consensus 616 vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 616 VEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVT 691 (705)
T ss_pred EEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEe
Confidence 99887644 34455666899999999999999999999999 99999988877665544 578999999999999999
Q ss_pred EeCc--EEEEEe
Q 010669 460 ASAD--IRVYQV 469 (504)
Q Consensus 460 ~~~d--i~vw~~ 469 (504)
|+.| -.||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 9998 888876
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=7.9e-23 Score=180.89 Aligned_cols=231 Identities=23% Similarity=0.313 Sum_probs=188.3
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
.-.|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+.+++....+++||+|++|++||.+..
T Consensus 50 ~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~- 126 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK- 126 (323)
T ss_pred heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-
Confidence 345788999999986 567889999999999999987654 44569999999999998888999999999999999863
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.....+. ....|.++.. .++.|++|+.|..+.+||+++.....+.... .-...+.|+++-|++.-+++++-|
T Consensus 127 --~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS---~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 127 --VVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRES---SLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred --ccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccc---cceeEEEEEEEecCCCceEEEeec
Confidence 3333333 3347888876 4889999999999999999987765544322 345679999999988889999999
Q ss_pred CcEEEEEcCCC----ceeeeeeCCC---------CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669 379 ALVKIWDVKSQ----ANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 379 g~I~iwd~~~~----~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
|.|.+=.+... +....|+.|. .+|++|+|+|--..|++|+.|| |.+||+.+.+.+..+... ...
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~S 276 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETS 276 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCc
Confidence 99988666554 3455666664 2799999999988999999999 999999988877777554 567
Q ss_pred eeEEEECCCCCEEEEEeC
Q 010669 445 TNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 445 v~~i~~~~~g~~l~~~~~ 462 (504)
|.+++|+.+|..||+++.
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 999999999999999874
No 123
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.1e-21 Score=188.49 Aligned_cols=253 Identities=15% Similarity=0.142 Sum_probs=190.4
Q ss_pred CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCCcce
Q 010669 225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~ 302 (504)
.+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.|++||+.+. ..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---~~ 107 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR---KV 107 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC---eE
Confidence 35679999999976 5677889999999999888877765544 5778999999876554 56899999999874 44
Q ss_pred eEEeccCCcCeEEEEEccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCCCc
Q 010669 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEAL 380 (504)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~dg~ 380 (504)
+..+.. ...+.+++|+|+++++++++.++ .+.+||..++........ .....+++|+|+|.+|+++ ..+|.
T Consensus 108 ~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 108 LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCE
Confidence 444432 34468899999999999988775 567789988876654431 1245779999999988655 46899
Q ss_pred EEEEEcCCCceeeeeeCCC-------CCeEEEEEcCCCcEEEEE-eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669 381 VKIWDVKSQANVAKFDGHV-------GAVTAISFSENGYYLATA-AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 381 I~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~g~~l~s~-~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
|++||+++++.+..+..+. .....++|+|+|.+++++ +.++ |.+||+++++....+.. ...+.+++|+
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~ 257 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFT 257 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEEC
Confidence 9999999988776654221 123568899999986554 3344 99999998877655432 3468899999
Q ss_pred CCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 452 HSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 452 ~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
|+|++|++++. + |.+||+ ..++++..+... ....+++|.|
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~----~~~~~~~~~~~~---~~~~~~~~~~ 300 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDV----AALKVIKSIKVG---RLPWGVVVRP 300 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEEC----CCCcEEEEEEcc---cccceeEeCC
Confidence 99999988643 3 999998 778888888653 4457777754
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=195.57 Aligned_cols=234 Identities=20% Similarity=0.340 Sum_probs=184.6
Q ss_pred cCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCC-------CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCe
Q 010669 263 GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDG-------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT 333 (504)
Q Consensus 263 ~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~ 333 (504)
.|.+.|+.+.+.|+. ..+++++..+.|.|||...-. ...+-..+.+|...-.+++|++.. -++++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999999954 467778889999999976532 123334788999888999999854 48999999999
Q ss_pred EEEEECCCCeEE-E-EeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcC--CCceeeeeeCCCCCeEEEEEc
Q 010669 334 WCFYDLSSGICL-T-QVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK--SQANVAKFDGHVGAVTAISFS 408 (504)
Q Consensus 334 i~iwd~~~~~~~-~-~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~s 408 (504)
|.+||+...... . ........+|...|..++|++ +..+|++++.|+.+.|||+| +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999764331 0 000011347889999999999 77889999999999999999 556677788999999999999
Q ss_pred C-CCcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeeccCcc-------
Q 010669 409 E-NGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKAD------- 475 (504)
Q Consensus 409 ~-~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~~~~------- 475 (504)
| ++..||+|+.|+ |.+||+|+.. ++.++..| ...|..+.|+|.. ..|++++.| +.|||+......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H--~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGH--EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCC--CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 9 678899999898 9999999875 45556555 7899999999965 678888888 999999553322
Q ss_pred ---ceeEEEccCCCCCCceeEEEEeecC
Q 010669 476 ---WNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 476 ---~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
-+++....|| .+.|..+++.|+-
T Consensus 360 dgppEllF~HgGH--~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 360 DGPPELLFIHGGH--TAKVSDFSWNPNE 385 (422)
T ss_pred cCCcceeEEecCc--ccccccccCCCCC
Confidence 2345677788 8899999888764
No 125
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.4e-24 Score=203.29 Aligned_cols=243 Identities=14% Similarity=0.253 Sum_probs=201.8
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEE-eeCCCEEEEEeCCCcEEEEeCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~-s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
..|.+-|..+....+|+.|++++.|-+|++|+...+ -++.++..|.+.|.|+++ -++..++++||-|+.|.+||+..
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~ 149 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT 149 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence 457788999999999999999999999999998776 567788899999999999 67888999999999999999986
Q ss_pred CCC-------cceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669 297 DGN-------YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (504)
Q Consensus 297 ~~~-------~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd 368 (504)
+.. ......+. ++...|++++.++.|..|++|+..+.+++||.++++.+..+. +|...|.++-.++|
T Consensus 150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-----GHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-----GHTDNVRVLLVNDD 224 (735)
T ss_pred cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-----ccccceEEEEEcCC
Confidence 521 11122233 788999999999999999999999999999999999888876 88899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669 369 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 447 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~ 447 (504)
|..++++++||+|++||+...+++.++..|...|.++..+|+=.++++|+.|+ |..=|+++......+... ..+|..
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~ 302 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLK 302 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhh
Confidence 99999999999999999999999999999999999999999999999999999 999999985432222222 456666
Q ss_pred EEECCCCCEEEEEeCc--EEEEEe
Q 010669 448 VDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 448 i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+..+...+-+-+++.| |+-|..
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred hhhccccCCceeeeccccceecCC
Confidence 6666433322333333 777754
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-23 Score=180.00 Aligned_cols=234 Identities=18% Similarity=0.235 Sum_probs=187.6
Q ss_pred ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEEC
Q 010669 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDL 339 (504)
Q Consensus 262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~ 339 (504)
..|.+.|.++...-.|+.|++++.|++|+|+.++..+....+.++.+|.++|+.++|.. -|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 46888898888877899999999999999999988766678889999999999999954 6899999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCC---ceeeeeeCCCCCeEEEEEcCC---C
Q 010669 340 SSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSEN---G 411 (504)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~---g 411 (504)
.+++-.+... ...|...|++++|-| -|..|++++.||.|.|.+.+.. ........|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 88 ENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred CCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 8885444333 347889999999999 5789999999999999998764 223344679999999999995 5
Q ss_pred -----------cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC----CEEEEEeCc--EEEEEeeccC
Q 010669 412 -----------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG----SYLAVASAD--IRVYQVASVK 473 (504)
Q Consensus 412 -----------~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g----~~l~~~~~d--i~vw~~~~~~ 473 (504)
+.|++|+.|. |+||+...+.-...-....|...|+.++|.|.- .+|++++.| +.||......
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 5799999998 999999876422222233447899999999964 689999999 8899875443
Q ss_pred ccce--eEEEccCCCCCCceeEEEEeecCccc
Q 010669 474 ADWN--CIKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 474 ~~~~--~i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
..|+ ++..| ...+..+.++..|.++
T Consensus 245 e~wk~tll~~f-----~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 245 EPWKKTLLEEF-----PDVVWRVSWSLSGNIL 271 (299)
T ss_pred CcccccccccC-----CcceEEEEEeccccEE
Confidence 4443 33443 5578999999888765
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.1e-21 Score=183.95 Aligned_cols=267 Identities=18% Similarity=0.244 Sum_probs=202.2
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE---cccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT---LSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
+.....|..+.|+|.+..++.....|.+.+|++..+...++ +..+ ..-|.|++|.++|+ +++|..+|.|.||+..
T Consensus 197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 34456788999999776555555578999999988866543 3333 36799999999887 7899999999999986
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-----------EEEeecCC------------
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-----------LTQVSDAG------------ 352 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~~~------------ 352 (504)
+. +..+....|.+.|.+++...+|.++- |+.|..|..||-.-.+. ++.+....
T Consensus 276 ~~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 276 TN---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred Cc---eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 54 44445559999999999998887555 99999999998321100 01110000
Q ss_pred ------------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669 353 ------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420 (504)
Q Consensus 353 ------------~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d 420 (504)
..+|......++.+|+...+++++.|+.+++|+ ..+++.+.. -..+..|+.|+|.| .++.|+..
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeecc
Confidence 024556778999999999999999999999999 444444333 34688999999999 89999988
Q ss_pred c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669 421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 421 ~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
| ..+.|..+... .++... +.+++.+.|+|+|.+||+|+.| |.||.++ .++.....+..|.+ ++|+.++|+
T Consensus 428 G~w~V~d~e~~~l-v~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs---~~g~~y~r~~k~~g-s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDL-VTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS---ANGRKYSRVGKCSG-SPITHLDWS 500 (626)
T ss_pred ceEEEEeccccee-EEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEEC---CCCcEEEEeeeecC-ceeEEeeec
Confidence 8 88999988443 333333 6789999999999999999999 9999984 44555555555544 899999999
Q ss_pred ecCcc
Q 010669 498 VLGQT 502 (504)
Q Consensus 498 ~~g~~ 502 (504)
+|+|.
T Consensus 501 ~Ds~~ 505 (626)
T KOG2106|consen 501 SDSQF 505 (626)
T ss_pred CCCce
Confidence 99985
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.5e-23 Score=190.58 Aligned_cols=234 Identities=21% Similarity=0.296 Sum_probs=180.0
Q ss_pred EEEEecc-------CCCEEEEEeCCCcEEEEcCCCCce---E------------------EEcccCccceeEEEEeeC-C
Q 010669 227 VSLDIHY-------SKDVIATGGVDTNAVLFDRPSGQI---V------------------TTLSGHSKKVTSVKFVTE-G 277 (504)
Q Consensus 227 ~~~~~s~-------~~~~l~sg~~dg~i~vwd~~~~~~---~------------------~~~~~h~~~v~~l~~s~~-~ 277 (504)
.|+.|.. .|+++|.|+.|..|.|||+.-... . ..-.+|+..|..++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 367999999999999999742110 0 012369999999999874 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCC
Q 010669 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDG 355 (504)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~ 355 (504)
+.|++||.|.+|++||+.++ ++..++..|.+.|.++.|||. ..++++|+.|++|.+.|++... .-..+.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk------ 327 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK------ 327 (463)
T ss_pred eeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE------
Confidence 57999999999999999997 788888889999999999995 5689999999999999999422 122221
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCc
Q 010669 356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK 431 (504)
Q Consensus 356 ~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~ 431 (504)
..+.|-.++|+| ....+++++.||+|+-+|+|+. +++.+++.|.++|++|+++.. -.+|++++.++ |++|++....
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 125789999999 5578889999999999999986 899999999999999999885 46788888888 9999987544
Q ss_pred ceeeeecCCCCCCeeEEEECCCCCE-EEEEeCc--EEEEEe
Q 010669 432 NFRSFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQV 469 (504)
Q Consensus 432 ~~~~~~~~~~~~~v~~i~~~~~g~~-l~~~~~d--i~vw~~ 469 (504)
.-......-.-+...|++++|+-.+ ++.||.. ++|||+
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 3211111111234778888888755 4555555 999998
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.8e-21 Score=185.54 Aligned_cols=249 Identities=15% Similarity=0.166 Sum_probs=187.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (504)
++++++++.|+.+++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..++ .....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC-c
Confidence 35788999999999999999998888876544 6789999999876 56778899999998875 44444544433 5
Q ss_pred EEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCce
Q 010669 314 QAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVKSQAN 391 (504)
Q Consensus 314 ~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg-~I~iwd~~~~~~ 391 (504)
..+.|+|+++.++++ +.|+.+++||+++++.+..+.. ...+.+++|+|+|.+++++..++ .+.+||.++++.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 678999999977654 5689999999998877666531 12467899999999999988765 567789988876
Q ss_pred eeeeeCCCCCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCCCcceeeeecCCC-----CCCeeEEEECCCCCEEEEEe--C
Q 010669 392 VAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSDS-----ETPTNSVDFDHSGSYLAVAS--A 462 (504)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~~~~~~~~~~~~~-----~~~v~~i~~~~~g~~l~~~~--~ 462 (504)
+..+.. ...+.+++|+++|.+|++++ .++ |++||+.+++.+..+..... ......++|+|++++++++. .
T Consensus 150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 150 VDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 655442 23567899999999886554 466 99999999887766643210 11345788999999866543 3
Q ss_pred c-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 463 D-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 463 d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
+ +.+||. .+++.+..+.. ...+.++.|+|+|+.
T Consensus 229 ~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 229 NRVAVVDA----KTYEVLDYLLV---GQRVWQLAFTPDEKY 262 (300)
T ss_pred CeEEEEEC----CCCcEEEEEEe---CCCcceEEECCCCCE
Confidence 3 999998 56676665532 347889999999874
No 130
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.2e-23 Score=181.34 Aligned_cols=245 Identities=21% Similarity=0.351 Sum_probs=200.3
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcC------CC------------------------------C----ce
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDR------PS------------------------------G----QI 257 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~------~~------------------------------~----~~ 257 (504)
-+.+|.+.|+++.|++.+.++++++.|++..||.. .. + .+
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 46789999999999999999999999999999961 11 0 12
Q ss_pred EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (504)
Q Consensus 258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (504)
+..+.+|.+.|.+..|...|+.+++++.|.+..+||++++ ..+..+.+|....+.++-||..+++++++.|.+.++|
T Consensus 265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence 4567889999999999999999999999999999999997 7888999999999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLAT 416 (504)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s 416 (504)
|++..-....+ ..+|...|+++.|..|.+ +++|+.|.+|+|||+++.. ++.++. ..++++.++.+..+..++.
T Consensus 342 DFReaI~sV~V----FQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 342 DFREAIQSVAV----FQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred cchhhcceeee----ecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEe
Confidence 99854332222 338899999999998765 7899999999999999864 566666 4578999999988888888
Q ss_pred EeCCc-EEEEEcCCCcceeee--ecCCCCCCeeEEEECCCC--CEEEEEeCc--EEEEEeec
Q 010669 417 AAHDG-VKLWDLRKLKNFRSF--ESSDSETPTNSVDFDHSG--SYLAVASAD--IRVYQVAS 471 (504)
Q Consensus 417 ~~~d~-v~vwd~~~~~~~~~~--~~~~~~~~v~~i~~~~~g--~~l~~~~~d--i~vw~~~~ 471 (504)
--++. |++||+...+..+.- ....|...|.+++|..+- .-|+++|-| +.=|+++.
T Consensus 416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 87777 999999865433211 122346789999997653 457778877 77788743
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.4e-22 Score=177.22 Aligned_cols=233 Identities=24% Similarity=0.320 Sum_probs=189.3
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEEEeCCCcEEEEeCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~s~dg~i~iwd~~~ 296 (504)
...|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... .|++||.|.+|+.||.+.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 45688999999999999999999999999999999985 556777999999999987555 799999999999999987
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
. .++.++. -.+.+.++.. ....++++..+..|.+|+++++......... .-.-.+.|++..+|....+.|+
T Consensus 147 ~---~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~S---pLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 147 S---NPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIES---PLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred C---Ceeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcC---cccceeeEEEEEecCCceEeee
Confidence 5 5555554 3466777765 3568889999999999999876443322211 2345789999999998899999
Q ss_pred CCCcEEEEEcCCC--ceeeeeeCCCC---------CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669 377 SEALVKIWDVKSQ--ANVAKFDGHVG---------AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 377 ~dg~I~iwd~~~~--~~~~~~~~~~~---------~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
-.|.+.|..+..+ +.-..|+.|.. +|++|+|+|.-..|++++.|| +.+||-.....++....+ ..+
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qp 295 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQP 295 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCc
Confidence 9999999998776 44556666652 688999999988999999999 999998777666666655 789
Q ss_pred eeEEEECCCCCEEEEE-eCc
Q 010669 445 TNSVDFDHSGSYLAVA-SAD 463 (504)
Q Consensus 445 v~~i~~~~~g~~l~~~-~~d 463 (504)
|++..|+.+|.+++.+ |.|
T Consensus 296 Itcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cceeEecCCCCEEEEEeecc
Confidence 9999999999988765 555
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=6.7e-22 Score=195.59 Aligned_cols=274 Identities=21% Similarity=0.289 Sum_probs=220.1
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~ 297 (504)
+..+.+.|+++.=+|--+.++.|..+|+|.+++++.++.+.+++...+.|+.++|..||+ .+++|+..|.+.+||++..
T Consensus 198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred ecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence 345678999999999999999999999999999999999999996569999999999998 4677778899999999875
Q ss_pred CCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-----------------EEEe-------ecCC
Q 010669 298 GNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-----------------LTQV-------SDAG 352 (504)
Q Consensus 298 ~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-----------------~~~~-------~~~~ 352 (504)
..+..+ ..|.+.|....|.|....+++++.|..+++|=.+++.- +..+ ...+
T Consensus 278 ---kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~ 354 (910)
T KOG1539|consen 278 ---KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAK 354 (910)
T ss_pred ---eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecc
Confidence 333333 47889999999999999999999999888774432110 0000 0000
Q ss_pred C-------------------------------------------------------------------------------
Q 010669 353 T------------------------------------------------------------------------------- 353 (504)
Q Consensus 353 ~------------------------------------------------------------------------------- 353 (504)
.
T Consensus 355 ~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~ 434 (910)
T KOG1539|consen 355 QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS 434 (910)
T ss_pred cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc
Confidence 0
Q ss_pred ----------CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee---eCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669 354 ----------DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD 420 (504)
Q Consensus 354 ----------~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~~~d 420 (504)
......+++++.++-|++.+.|+..|.|-+|++.+|-....| ..|.++|+.++...-++.+++++.+
T Consensus 435 G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 435 GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCc
Confidence 001134678899999999999999999999999999888888 4799999999998888899999999
Q ss_pred c-EEEEEcCCCcceeeeec---------------------------------------CCCCCCeeEEEECCCCCEEEEE
Q 010669 421 G-VKLWDLRKLKNFRSFES---------------------------------------SDSETPTNSVDFDHSGSYLAVA 460 (504)
Q Consensus 421 ~-v~vwd~~~~~~~~~~~~---------------------------------------~~~~~~v~~i~~~~~g~~l~~~ 460 (504)
| +++||+.+......+.. ..|...|++++|||||++|+++
T Consensus 515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 9 99999876442211110 1135689999999999999999
Q ss_pred eCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 461 SAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 461 ~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
+.| |++||+ .++.++..+.- ..+.+++.|+|+|..
T Consensus 595 smD~tIr~wDl----pt~~lID~~~v---d~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 595 SMDSTIRTWDL----PTGTLIDGLLV---DSPCTSLSFSPNGDF 631 (910)
T ss_pred ecCCcEEEEec----cCcceeeeEec---CCcceeeEECCCCCE
Confidence 998 999999 77888888855 678999999999964
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.7e-21 Score=182.52 Aligned_cols=234 Identities=20% Similarity=0.361 Sum_probs=188.6
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC-----
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED----- 297 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~----- 297 (504)
+.-|.|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccc
Confidence 46799999999887 56899999999999988888777779999999999998887 555999999999982110
Q ss_pred ----------------C--------Cc--------ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE
Q 010669 298 ----------------G--------NY--------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345 (504)
Q Consensus 298 ----------------~--------~~--------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (504)
+ +. .......+|.+..+.++.||+.+.+++++.|+.+++|+ ..+..
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 0 00 01123457889999999999999999999999999999 33333
Q ss_pred EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEE
Q 010669 346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL 424 (504)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~v 424 (504)
.... ...+..|+.|||.| .++.|+..|...+.|..+...+..-. .+.++++++|+|+|.+||.|+.|+ |++
T Consensus 402 wt~~------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 402 WTKI------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred EEEE------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 3322 12578999999999 99999999999999998855554444 488999999999999999999999 999
Q ss_pred EEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEE
Q 010669 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~ 468 (504)
|-+.............+..+|+.+.|++|++||.+-+.| +-.|.
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 998765443333332334899999999999999999888 88894
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-22 Score=189.53 Aligned_cols=263 Identities=17% Similarity=0.290 Sum_probs=207.2
Q ss_pred CCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCC--ce--EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 221 TSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG--QI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~--~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
....++.++.|+.... .+++.+.|..+++|.-... +. +....+. .-.|++......++++|+..++|+|||++
T Consensus 32 t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 32 TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 3355799999998665 2344456888999964321 12 2333332 34555555556899999999999999998
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-EEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGT 374 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-~l~~ 374 (504)
.. .+.+.+++|.+.|+++.++-...||++++..|.|.|..+.++.....+.. +....+.-+.|+|..+ +|.+
T Consensus 110 ~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~----~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 110 AK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI----DSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred HH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----CCCCeEEEeecccccceeeEe
Confidence 64 66777889999999999999999999999999999999999877766652 2234577899999654 6677
Q ss_pred EeCCCcEEEEEcCCCceeeee-eCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669 375 GTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 375 g~~dg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|. |.+||.+..+....+.. ..+...++|.
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~ 259 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFS 259 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeec
Confidence 899999999999888777666 46999999999999 567788889997 99999998777766665 4689999999
Q ss_pred CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 452 ~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
++|.+|++|+.. +..||+ ......+..+..| ...|++++|-+.-
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~---R~~k~Pv~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDM---RSTKAPVAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCceEEEEec---ccCCCCceEeeec--ccceeEEEeeecc
Confidence 999999999888 777777 3456788888888 7779999998763
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=187.81 Aligned_cols=247 Identities=14% Similarity=0.203 Sum_probs=200.6
Q ss_pred CEEEEEe-CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669 236 DVIATGG-VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (504)
Q Consensus 236 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (504)
++++++. .-..+.+|.+..........--.++|.+++-+|+|.+|+.|+..|.|++|.+.++ ..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc---cHHHHHHhhcccee
Confidence 4555554 3457889988655444433345688999999999999999989999999999997 67777789999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCC---------CeEEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEE
Q 010669 315 AVTVHATNKYFVTASLDNTWCFYDLSS---------GICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKI 383 (504)
Q Consensus 315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~i 383 (504)
++.|+-||.+|++||.||.|.+|++.. -+....+ ..|.-+|+.+...+. ...+++++.|.++++
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-----~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~ 202 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-----SDHTLSITDLQIGSGGTNARLYTASEDRTIKL 202 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-----ccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence 999999999999999999999998742 1223333 367888999988875 368999999999999
Q ss_pred EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc----------------ceeeeecCCCCCCee
Q 010669 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK----------------NFRSFESSDSETPTN 446 (504)
Q Consensus 384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~----------------~~~~~~~~~~~~~v~ 446 (504)
||+..+..+.++. ....+.+++.+|-+..++.|+.+| |.+.++.+.. .+..+.++.....|+
T Consensus 203 wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 203 WDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred EEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 9999999888876 557899999999999999999999 8888775433 233444554445999
Q ss_pred EEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669 447 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 447 ~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
+++++-||..|++|+.| +.|||+ .+.++++++..- .++|+.+.+-
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi----~S~Q~iRtl~~~--kgpVtnL~i~ 328 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDI----YSKQCIRTLQTS--KGPVTNLQIN 328 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEec----chHHHHHHHhhh--ccccceeEee
Confidence 99999999999999999 999999 778888888643 7899999883
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.8e-23 Score=188.32 Aligned_cols=222 Identities=21% Similarity=0.324 Sum_probs=186.4
Q ss_pred EEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEE
Q 010669 258 VTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (504)
Q Consensus 258 ~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (504)
+..+.+|.+.|.|++=+|.. ..+++|+.||.|+|||+... .+..++..|.+.|.+|+++. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 44567899999999999866 67999999999999999876 78889999999999999975 78999999999999
Q ss_pred EECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC-cEEE
Q 010669 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLA 415 (504)
Q Consensus 337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~ 415 (504)
|.++.. ....+. ....+..+..+..+..+++++. .|.|||.....++..+..-...|.++.|+|.. ..|+
T Consensus 134 wk~~~~-p~~til------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 134 WKIDGP-PLHTIL------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeccCC-cceeee------ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 998764 444443 2346778888888888999876 59999999999999998777899999999965 5667
Q ss_pred EEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669 416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAAS 492 (504)
Q Consensus 416 s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~ 492 (504)
+++.|+ |.+||+|.+.+++.+.. ....+.|+|+|.+-.+++|++| +..||+ ..--..+..+.+| .+.|.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~Dm---R~l~~p~~v~~dh--vsAV~ 276 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDM---RNLSRPLNVHKDH--VSAVM 276 (433)
T ss_pred eeccCCceEEEecccCCccceeee---eccccceecCccccceeeccccccceehhh---hhhcccchhhccc--ceeEE
Confidence 776787 99999999999888766 3567889999977777888888 888887 3445678888998 99999
Q ss_pred EEEEeecCc
Q 010669 493 FLFLFVLGQ 501 (504)
Q Consensus 493 ~l~~~~~g~ 501 (504)
+++|+|.|+
T Consensus 277 dVdfsptG~ 285 (433)
T KOG0268|consen 277 DVDFSPTGQ 285 (433)
T ss_pred EeccCCCcc
Confidence 999999997
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=194.13 Aligned_cols=233 Identities=21% Similarity=0.359 Sum_probs=198.7
Q ss_pred CCeEEEEeccC-----CCEEEEEeCCCcEEEEcCCCCce-EEEcc-----cCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669 224 PGIVSLDIHYS-----KDVIATGGVDTNAVLFDRPSGQI-VTTLS-----GHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (504)
Q Consensus 224 ~~I~~~~~s~~-----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~-----~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw 292 (504)
++|..+++... .+.+++.-.+..++.|+..+... ...+. .....+++++.++.|++.+.|+..|+|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 46777766542 24566666778899999876544 22222 233678999999999999999999999999
Q ss_pred eCCCCCCcceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669 293 QGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (504)
Q Consensus 293 d~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg 369 (504)
+++.+ .....+ ..|.++|++++....++.+++++.+|.+++||..+...+..+.. ...+.++..|...
T Consensus 476 NmQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l------~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 476 NMQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL------GSSITGIVYHRVS 546 (910)
T ss_pred EcccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc------CCCcceeeeeehh
Confidence 99986 455555 48999999999998889999999999999999999887777653 2568999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 448 (504)
Q Consensus 370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i 448 (504)
.+++.+..|-.|+++|+.+.+.++.|.+|.+.|++++|||||+||++++.|+ |++||+.++.++-.+.. ..++.++
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sl 623 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSL 623 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceee
Confidence 9999999999999999999999999999999999999999999999999998 99999999999887766 4789999
Q ss_pred EECCCCCEEEEEeCc---EEEEE
Q 010669 449 DFDHSGSYLAVASAD---IRVYQ 468 (504)
Q Consensus 449 ~~~~~g~~l~~~~~d---i~vw~ 468 (504)
.|+|+|.|||+...| |.+|.
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEE
Confidence 999999999999887 88885
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4e-22 Score=175.06 Aligned_cols=207 Identities=25% Similarity=0.429 Sum_probs=168.2
Q ss_pred cCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCc---------cee---EEeccCCcCeEEEEEcc-CCCEEEEE
Q 010669 263 GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY---------DCK---HTLKDHTAEVQAVTVHA-TNKYFVTA 328 (504)
Q Consensus 263 ~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~---~~~~~h~~~v~~l~~~p-~~~~l~s~ 328 (504)
.|.+.|+++...+ .|+++++|+.||.|.+||++....+ .++ ..-.+|.-.|.++.|-| |...|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4778899999987 7889999999999999998764311 111 11136778899999998 55688899
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEE
Q 010669 329 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI 405 (504)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l 405 (504)
+.|.++++||..+.+....+.. +..|.+-+++| ..-++|+|..+-.|++.|+.+|...+.+.+|.+.|..+
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~m------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKM------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred cccceEEEeecccceeeEEeec------CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 9999999999999888777752 35688888888 34578899999999999999999999999999999999
Q ss_pred EEcCCC-cEEEEEeCCc-EEEEEcCCC-cceeeeecC------------CCCCCeeEEEECCCCCEEEEEeCc--EEEEE
Q 010669 406 SFSENG-YYLATAAHDG-VKLWDLRKL-KNFRSFESS------------DSETPTNSVDFDHSGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 406 ~~s~~g-~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~------------~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~ 468 (504)
.|+|.. ..|++|+.|+ |++||+|.. .+...+..+ .+.+.+++++|..+|.++++++.| +++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 999965 5678889999 999999875 344433322 246789999999999999999887 99999
Q ss_pred eeccCcc
Q 010669 469 VASVKAD 475 (504)
Q Consensus 469 ~~~~~~~ 475 (504)
..++..+
T Consensus 275 ~~~G~nt 281 (397)
T KOG4283|consen 275 MESGRNT 281 (397)
T ss_pred cccCccc
Confidence 8665543
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=195.09 Aligned_cols=228 Identities=18% Similarity=0.302 Sum_probs=189.5
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
+...|.+++.. +.+|++|+.+++|.+|...+++.-..+...+-++++++|+.+|++++.||.|-.|++-++.+. .
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s 129 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---S 129 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---c
Confidence 45567777644 569999999999999999888766566666788999999999999999999999999999876 5
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC---CCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT---DGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
....+.+|.++|.++.|+|.+++|++.+.||.|++||+.++.....+..... ......+..++|+|+|..|++...|
T Consensus 130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence 6677889999999999999999999999999999999999887766653211 0113456789999998889999999
Q ss_pred CcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 379 ALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
+.|++|+...+.....+.. +...++++.|+|+|.|||+++.++ |.|||..+.. .+.....|.+++|.|+++
T Consensus 210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~------~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE------RHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch------hccccceeEEEecCCCCC
Confidence 9999999999988877754 444599999999999999999998 9999998721 133356899999999887
Q ss_pred EEEEE
Q 010669 456 YLAVA 460 (504)
Q Consensus 456 ~l~~~ 460 (504)
.+-..
T Consensus 284 ~it~~ 288 (933)
T KOG1274|consen 284 AITLI 288 (933)
T ss_pred eeEEE
Confidence 65543
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.7e-22 Score=183.16 Aligned_cols=232 Identities=21% Similarity=0.274 Sum_probs=194.7
Q ss_pred ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCe
Q 010669 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI 343 (504)
Q Consensus 265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~ 343 (504)
.+.|+++.|+|...+|++|+.||+++||.++...+ ..++.+.-...+|.+..|+|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46799999999999999999999999999876433 35555555678999999999999 89999999999999999887
Q ss_pred EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-E
Q 010669 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V 422 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v 422 (504)
....-...+. ....+..+..++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+|+.|++++.+| |
T Consensus 292 ~~k~~~~~g~--e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 292 VTKLKPPYGV--EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred cccccCCCCc--ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 6554432222 13467889999999999999999999999999999999888 568899999999999999988888 9
Q ss_pred EEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc--CccceeEEEccCCCCCCceeEEEEee
Q 010669 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 423 ~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~--~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
.+||++...+++.+.... .-.-++++.+++|.|||+|+.. |.||+.++. ....++++++... ...|++|.|.+
T Consensus 369 ~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~ 445 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNH 445 (514)
T ss_pred EEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeeeeCc
Confidence 999999999999887643 2334678888999999999988 999996542 3456778888776 88999999999
Q ss_pred cCccc
Q 010669 499 LGQTC 503 (504)
Q Consensus 499 ~g~~~ 503 (504)
++|++
T Consensus 446 d~qiL 450 (514)
T KOG2055|consen 446 DAQIL 450 (514)
T ss_pred chhhh
Confidence 99975
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=3.9e-21 Score=186.66 Aligned_cols=279 Identities=15% Similarity=0.265 Sum_probs=213.8
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-------eEEEcccCccceeEEEEeeCCCEEEEEeCCCcE
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i 289 (504)
.+..+|.+-|+++.|+|.+..|++++.|.++.+|...+.. .+..+.+..+......|+|+++.+++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 3567999999999999999999999999999999865431 122334556678999999999999999999999
Q ss_pred EEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC---------------------------
Q 010669 290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--------------------------- 342 (504)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--------------------------- 342 (504)
++|.......+.....+.+|.+.|.+++|+|.|.++++.|.|.+-++|-.-..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99985554555666677899999999999999999999999988777533200
Q ss_pred --------eEEEEeecC---------------------------------------------------------------
Q 010669 343 --------ICLTQVSDA--------------------------------------------------------------- 351 (504)
Q Consensus 343 --------~~~~~~~~~--------------------------------------------------------------- 351 (504)
+.++.+...
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 000000000
Q ss_pred -------------------CCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeCCCCCeEEEEE
Q 010669 352 -------------------GTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVAKFDGHVGAVTAISF 407 (504)
Q Consensus 352 -------------------~~~~~~~~v~~~~~~pdg~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~i~~l~~ 407 (504)
..-+|...|.+++.+|+|+++|+++... .|++|+..+...+..+.+|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 0035566788999999999999998653 5999999999888899999999999999
Q ss_pred cCCCcEEEEEeCCc-EEEEEcCCCcc-eeeee-cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEE-
Q 010669 408 SENGYYLATAAHDG-VKLWDLRKLKN-FRSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKT- 481 (504)
Q Consensus 408 s~~g~~l~s~~~d~-v~vwd~~~~~~-~~~~~-~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~- 481 (504)
||||++|++.+.|. +.+|....... ...+. ...|..-|+++.|+|++.+++++|.| ++||....... +.+..
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d--~~i~~~ 658 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD--KYISRF 658 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh--hhhhhh
Confidence 99999999999998 99998754321 11111 23346678999999999999999999 99999844321 22222
Q ss_pred -ccCCCCCCceeEEEEeec
Q 010669 482 -FPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 482 -~~~h~~~~~v~~l~~~~~ 499 (504)
...+ ...||++++.+.
T Consensus 659 a~~~~--~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 659 ACLKF--SLAVTAVAYLPV 675 (764)
T ss_pred chhcc--CCceeeEEeecc
Confidence 2233 778999888764
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3e-22 Score=178.40 Aligned_cols=243 Identities=21% Similarity=0.331 Sum_probs=188.5
Q ss_pred CCCCeEEEEeccCC----CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCC
Q 010669 222 SKPGIVSLDIHYSK----DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 222 ~~~~I~~~~~s~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~ 296 (504)
|......++|+.+. .++|+||.-|.|+|.|+.+++....+.+|...|+.+.|+|+ .++++++|.|.+|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 66678888888753 38999999999999999999999999999999999999995 56899999999999999998
Q ss_pred CCCcceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC----------------------
Q 010669 297 DGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA---------------------- 351 (504)
Q Consensus 297 ~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------------------- 351 (504)
. .|+..+ .+|.+.|.++.|+++|.+|++++.|.++++|++...+....+...
T Consensus 168 ~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 168 D---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 7 676665 479999999999999999999999999999999843221111100
Q ss_pred -CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc-CCCc-------------eeeeeeCCCCCeEEEEE--cCCCcEE
Q 010669 352 -GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV-KSQA-------------NVAKFDGHVGAVTAISF--SENGYYL 414 (504)
Q Consensus 352 -~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~-~~~~-------------~~~~~~~~~~~i~~l~~--s~~g~~l 414 (504)
....|...|-|+.|- |.++++-+-++.|..|.. +-.+ .+..++-....|.-+.| .+-+++|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 122455566666665 578888888899999987 2111 12333334445655554 5568899
Q ss_pred EEEeCCc-EEEEEcCCCcce--eeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669 415 ATAAHDG-VKLWDLRKLKNF--RSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 415 ~s~~~d~-v~vwd~~~~~~~--~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
+.|...| |++||++...+. .++..+.....|...+|+.||.+|+..++|..||.+
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 9999998 999999987653 233333346789999999999999999999777776
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.9e-21 Score=179.20 Aligned_cols=257 Identities=18% Similarity=0.212 Sum_probs=195.7
Q ss_pred ccCCCCCeEEEEeccCC--CEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEE
Q 010669 219 HKTSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRV 291 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~--~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~i 291 (504)
.+-+..+|++++|+|.. +++++|..-|+|-+||+.+. .-+..+..|..+|.++.|+| +...+++.|+||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 44567899999999965 48899999999999999522 33566788999999999999 5568999999999999
Q ss_pred EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCC
Q 010669 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGL 370 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~ 370 (504)
-|++.. ....+..+......+.++.|+.+...++.++.=|...+||++++....... .-|...|..++++| ...
T Consensus 262 ~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 262 QDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh----hhhhcccceeecCCCCch
Confidence 999874 334444444345567788888888888888888899999999876533221 14566899999999 567
Q ss_pred EEEEEeCCCcEEEEEcCCCc----eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC----CCcceeeeecCC-
Q 010669 371 ILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR----KLKNFRSFESSD- 440 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~----~~~~~~~~~~~~- 440 (504)
+|++++.|++.+|||+|... ++.....|...|.+..|||.|-.|++.+.|. |+|||.. ...+...+....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence 89999999999999998642 2233345999999999999877788888887 9999983 333333333211
Q ss_pred CC--CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669 441 SE--TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 441 ~~--~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~ 484 (504)
+. -......|+|+..++++|..- |-||+- +.++.+..+.+
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~----~~~q~v~el~~ 460 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG----NGGQMVCELHD 460 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcC----CCCEEeeeccC
Confidence 11 124467899999999999876 999995 55665666543
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=186.40 Aligned_cols=265 Identities=16% Similarity=0.225 Sum_probs=190.4
Q ss_pred EEEEeccC---CCEEEEEeCCCcEEEEcCCCCce------EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 227 VSLDIHYS---KDVIATGGVDTNAVLFDRPSGQI------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 227 ~~~~~s~~---~~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
.++.|++. ...|+.+..||.|.++|...... +.....|...|..+.|-|....|++++.|.++++||+.+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34556653 34899999999999999765432 3455689999999999996668999999999999999885
Q ss_pred CCcceeEE--eccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEE----------eec------------CC
Q 010669 298 GNYDCKHT--LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQ----------VSD------------AG 352 (504)
Q Consensus 298 ~~~~~~~~--~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~------------~~ 352 (504)
.+... +.+|.+.|.+++|+|.+ ..|++|+.||.|.|||++-...... ... ..
T Consensus 133 ---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 133 ---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 34433 78999999999999965 5889999999999999974331000 000 00
Q ss_pred CCCCCCCeEE---EEECCCCCEEEEEeC-CCcEEEEEcCCCceeee--------eeCC---CCCeEEEEEcCCCcEEEEE
Q 010669 353 TDGRPEGYTS---AAFHPDGLILGTGTS-EALVKIWDVKSQANVAK--------FDGH---VGAVTAISFSENGYYLATA 417 (504)
Q Consensus 353 ~~~~~~~v~~---~~~~pdg~~l~~g~~-dg~I~iwd~~~~~~~~~--------~~~~---~~~i~~l~~s~~g~~l~s~ 417 (504)
...+...|.+ +.+..|...||+++. |+.|+|||++....... +..| .-.++++.....|.+|++.
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 1122333444 555667778888777 99999999987644322 2223 2367788888778888777
Q ss_pred eCCc-EEEEEcCCCcc--eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669 418 AHDG-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAAS 492 (504)
Q Consensus 418 ~~d~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~ 492 (504)
+.|+ |++|+++.... +..+..+.....-..-..+|++.+|++|+.| ..+|.+ +..+.....+.+| .-.|+
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v---s~~e~~~~~l~Gh--t~eVt 364 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV---SSPEAPPALLLGH--TREVT 364 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee---cCccCChhhhhCc--ceEEE
Confidence 7787 99999987543 3333332212222334568999999999999 999998 4557777788898 77899
Q ss_pred EEEEeec
Q 010669 493 FLFLFVL 499 (504)
Q Consensus 493 ~l~~~~~ 499 (504)
++++.|.
T Consensus 365 ~V~w~pS 371 (720)
T KOG0321|consen 365 TVRWLPS 371 (720)
T ss_pred EEeeccc
Confidence 9988764
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=8.8e-21 Score=168.73 Aligned_cols=268 Identities=18% Similarity=0.241 Sum_probs=196.1
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCc------------eEEEcc-cCccceeEEEEe-------eCCCEEEEEeC
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------------IVTTLS-GHSKKVTSVKFV-------TEGDLFLTGSA 285 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~s~ 285 (504)
...+.|+|||..|++-+.|..+.+|++...- ....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4578999999999999999999999875210 011111 123457777774 56778999999
Q ss_pred CCcEEEEeCCCCCCcceeEEeccCCcC---eEEEEEccCCCEEEEEeCCCeEEEEEC-CCCeEEEEe--ecCCCCCCCCC
Q 010669 286 DKTVRVWQGSEDGNYDCKHTLKDHTAE---VQAVTVHATNKYFVTASLDNTWCFYDL-SSGICLTQV--SDAGTDGRPEG 359 (504)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~l~s~s~dg~i~iwd~-~~~~~~~~~--~~~~~~~~~~~ 359 (504)
+.-|++||.-++. .++......|.+. ..+++|+|||.+|++| ....|++||+ +.|..-... ...+..+..+-
T Consensus 132 ~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999998853 2333333345543 4689999999999876 5679999999 555432221 11212344667
Q ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCc-ceee
Q 010669 360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLK-NFRS 435 (504)
Q Consensus 360 v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~-~~~~ 435 (504)
+.|++|+| +...+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|.... |-.||+|..+ ++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 89999999 667999999999999999888999999999999999999999999999998764 9999999754 4444
Q ss_pred eecCCC-CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 436 FESSDS-ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 436 ~~~~~~-~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
+..+.. ...-.-+..+|+|++|++|+.+ |++||+. +-+..+..+..| ...|..+++.|-=
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk---~~gn~~sv~~~~--sd~vNgvslnP~m 352 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK---DLGNEVSVTGNY--SDTVNGVSLNPIM 352 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecC---CCCCcccccccc--cccccceecCccc
Confidence 444321 1112234557899999999888 9999982 235666677666 6677777776643
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=4e-21 Score=184.96 Aligned_cols=250 Identities=17% Similarity=0.278 Sum_probs=187.4
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE--cccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~ 295 (504)
...|.+.|..+.|-|....|++++.|.++++||+++++++.. +.+|.+.|.+++|.+ +...|++|+.||.|.|||+.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 456889999999999666899999999999999999988777 889999999999999 45579999999999999975
Q ss_pred CCCC---------------c---------ceeEEeccCCcCeEE---EEEccCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 010669 296 EDGN---------------Y---------DCKHTLKDHTAEVQA---VTVHATNKYFVTASL-DNTWCFYDLSSGICLTQ 347 (504)
Q Consensus 296 ~~~~---------------~---------~~~~~~~~h~~~v~~---l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~ 347 (504)
-... . +.+..-..+...|.+ +.+..|...|++++. |+.|+|||+++......
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 4320 0 001112234444544 455568889999988 99999999998766554
Q ss_pred eecCCC---C---CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCC--eEEEEEcCCCcEEEEE
Q 010669 348 VSDAGT---D---GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGA--VTAISFSENGYYLATA 417 (504)
Q Consensus 348 ~~~~~~---~---~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~--i~~l~~s~~g~~l~s~ 417 (504)
....+. . .....+.++.....|.+|++.+.|+.|++||+.+- .++..+.++... -..-..+|++.+|++|
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG 335 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc
Confidence 432211 1 12456888999999999999999999999999864 345555554321 1223468899999999
Q ss_pred eCCc-EEEEEcCCCccee-eeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEee
Q 010669 418 AHDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVA 470 (504)
Q Consensus 418 ~~d~-v~vwd~~~~~~~~-~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~ 470 (504)
+.|. .++|.+.+...-. .+.++ ...|++++|.|.. .-++++++| ++||++.
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred CCCcceeeeeecCccCChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 9998 9999998765433 33333 6789999998854 345566888 9999984
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.2e-21 Score=182.82 Aligned_cols=291 Identities=19% Similarity=0.194 Sum_probs=217.3
Q ss_pred CCCCCChhHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC
Q 010669 198 PPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG 277 (504)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~ 277 (504)
-+.+++...+..|...-. .++.+|.+.|.|+..+|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+
T Consensus 376 iPkLPsp~dLrPFPt~~~-lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 376 IPKLPSPKDLRPFPTRCA-LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLS 453 (733)
T ss_pred cccCCChhhcCCCcceee-eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCC
Confidence 356777777777765443 4688999999999999999999999999999999999999999887 45679999999977
Q ss_pred CE-EEEEeCCCcEEEEeCCCCC----------------------------------CcceeEEeccCCcCeEEEEEccCC
Q 010669 278 DL-FLTGSADKTVRVWQGSEDG----------------------------------NYDCKHTLKDHTAEVQAVTVHATN 322 (504)
Q Consensus 278 ~~-l~s~s~dg~i~iwd~~~~~----------------------------------~~~~~~~~~~h~~~v~~l~~~p~~ 322 (504)
.. ++.+..++.+.|-+..-+. ...-+...-.|...|..+.||..|
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 63 3333333335554421110 000112233577889999999999
Q ss_pred CEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC
Q 010669 323 KYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399 (504)
Q Consensus 323 ~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~ 399 (504)
.||++...+ ..|.|+++.......-+. ...+.+.++.|||...+|++++. ..|+|||+.....+..+....
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC
Confidence 999998764 468899988765544442 23457999999999999988875 579999998888887777667
Q ss_pred CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec----
Q 010669 400 GAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS---- 471 (504)
Q Consensus 400 ~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~---- 471 (504)
..|..++.+|+|..|+.|+.|+ +..||+.-. ++.+++..| ...+++++|++.-.++++|+.| +.||--..
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 7899999999999999999998 999999754 566666665 6789999999999999999998 55553111
Q ss_pred -cCccceeEEEccCCCCC--CceeEEEEee
Q 010669 472 -VKADWNCIKTFPDLSGT--GAASFLFLFV 498 (504)
Q Consensus 472 -~~~~~~~i~~~~~h~~~--~~v~~l~~~~ 498 (504)
.+.-.-.++.+.+|.-. ..|....|.|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccC
Confidence 11235578899999432 2355555655
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=6.7e-21 Score=173.68 Aligned_cols=231 Identities=22% Similarity=0.316 Sum_probs=183.7
Q ss_pred EEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC----cceeEEeccCCcCeEEEEEccC-CCEEEEEeCCC
Q 010669 259 TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDN 332 (504)
Q Consensus 259 ~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg 332 (504)
-.+.||+++|..++|+| +...+++||.|.+|.||.+..++. ...+..+.+|...|--+.|||. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999999 666899999999999999876532 2456778899999999999995 57899999999
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCC-CeEEEEEcCCC
Q 010669 333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENG 411 (504)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g 411 (504)
+|.+||+.+|+.+..+ .|...|.++.|+-||.+|++.+.|..|||||.++++.+..-.+|.+ .-..+.|-.+|
T Consensus 155 ~v~iWnv~tgeali~l------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITL------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred eEEEEeccCCceeeec------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 9999999999988776 4788999999999999999999999999999999999988888876 45567788899
Q ss_pred cEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccC
Q 010669 412 YYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 412 ~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~ 484 (504)
.++.+|-.. . +-+||..+......+...+....|.---|+++.++++.+|.. |+.|.+.....-...+.+|..
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 866666433 3 999998876654444444445678778899999998877754 999999554333444555544
Q ss_pred CCCCCceeEEEEee
Q 010669 485 LSGTGAASFLFLFV 498 (504)
Q Consensus 485 h~~~~~v~~l~~~~ 498 (504)
..+-.+|.|-|
T Consensus 309 ---~epQRG~g~mP 319 (472)
T KOG0303|consen 309 ---KEPQRGMGFMP 319 (472)
T ss_pred ---CCccccccccc
Confidence 44555555544
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=7.8e-21 Score=172.30 Aligned_cols=207 Identities=19% Similarity=0.373 Sum_probs=163.8
Q ss_pred ccCccceeEEEEeeCC--CEEEEEeCCCcEEEEeCCC-------------CCCcceeEEeccCCcCeEEEEEccCC-CEE
Q 010669 262 SGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSE-------------DGNYDCKHTLKDHTAEVQAVTVHATN-KYF 325 (504)
Q Consensus 262 ~~h~~~v~~l~~s~~~--~~l~s~s~dg~i~iwd~~~-------------~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l 325 (504)
..|.+.++.+.-++-+ .+.++-+..|.|.||++.. .....++.++.+|.+.=++++|+|-. ..+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577888888877754 4566667899999999643 12346788889999999999999933 358
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCe
Q 010669 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAV 402 (504)
Q Consensus 326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i 402 (504)
++|..-+.|++|...++.-..... ...+|...|-.++|+| ....|++|+-||+|+|||+|.+. .....+.|.+.|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~--Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQR--PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCc--cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 888888999999998865433322 2447899999999999 55789999999999999999883 222337899999
Q ss_pred EEEEEcCCCcEEEEEeCCc-EEEEEcCCC---cceeeeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeecc
Q 010669 403 TAISFSENGYYLATAAHDG-VKLWDLRKL---KNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASV 472 (504)
Q Consensus 403 ~~l~~s~~g~~l~s~~~d~-v~vwd~~~~---~~~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~ 472 (504)
+-|.|+.+-.+|++|+++| ++|||+|.. +++..|+.| ..+|+++.|+|.. ..++++|.| |.+||+...
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999888999999999 999999864 467778777 7899999999954 556666666 999999654
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.7e-21 Score=179.88 Aligned_cols=219 Identities=17% Similarity=0.247 Sum_probs=180.8
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (504)
-.|++......++++||..+.|+|||+....+.+.+++|...|+++.+.....+|++++..|.|.|..+.++ .....
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---~~tt~ 158 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---QKTTT 158 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---ccccc
Confidence 345555555589999999999999999977778889999999999999998999999999999999998885 33344
Q ss_pred eccC-CcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEE
Q 010669 306 LKDH-TAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVK 382 (504)
Q Consensus 306 ~~~h-~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~ 382 (504)
|... ...|.-+.|+|..+ +|.+++.+|.|.+||+.....+..+. ..|..+...++|+| +..+|++.+.|..|.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----EAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh----hhccCCcCcceecCCccceEEEecccceEE
Confidence 4433 34566899999776 56678999999999999877766553 37888999999999 667889999999999
Q ss_pred EEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCC
Q 010669 383 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSG 454 (504)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g 454 (504)
+||.+.......+. ...+.+.++|+++|.+|+.|+..| |..||+|..+ ++..+..| ...|++++|-|.-
T Consensus 235 ~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred Eeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec--ccceeEEEeeecc
Confidence 99999877666665 446899999999999999999999 9999999754 55566555 5679999998765
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=181.99 Aligned_cols=254 Identities=16% Similarity=0.272 Sum_probs=197.5
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
.|..++|-|||..|+.+.. ..+.+||...|..+.++++|.+.|+|++|+.||+.+++|+.|..|.+|+..-.+ +.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG----~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG----IL 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----ee
Confidence 6889999999998877754 479999999999999999999999999999999999999999999999866532 12
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw 384 (504)
. ..|++.|.|+.|+|-...+++++.. ..-+|........+. .....+.+++|..||.+|+.|..||+|.+-
T Consensus 89 k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-------kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 89 K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-------KSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-------hhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 2 3699999999999999999998764 467887664432221 123578999999999999999999999997
Q ss_pred EcCCCceeeeee---CCCCCeEEEEEcCCC-----cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 385 DVKSQANVAKFD---GHVGAVTAISFSENG-----YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 385 d~~~~~~~~~~~---~~~~~i~~l~~s~~g-----~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
+- +++....+. +.+.+|.+++|+|+. ..+++...+. +.+|.+. |+.+..-... .....++.+.++|.
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L--~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL--NFDPCCISYFTNGE 235 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC--CCCchhheeccCCc
Confidence 64 444433333 467899999999963 3555555554 6666654 3332211111 34567899999999
Q ss_pred EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669 456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
|+..||.| +++|- +.+..+.++-.. ...|..++.-|+||..
T Consensus 236 y~LiGGsdk~L~~fT-----R~GvrLGTvg~~--D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-----RDGVRLGTVGEQ--DSWIWTVQAKPNSQYV 278 (1081)
T ss_pred EEEEccCCCceEEEe-----ecCeEEeecccc--ceeEEEEEEccCCceE
Confidence 99999998 88886 578888888664 6789999999999864
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.3e-19 Score=158.82 Aligned_cols=241 Identities=20% Similarity=0.322 Sum_probs=181.0
Q ss_pred ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC-CCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 010669 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG-SEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYD 338 (504)
Q Consensus 262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd 338 (504)
.+|.+-|+++.|.+.|+.+++|+.|++|+|||. ...+++.+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478889999999999999999999999999995 44467888889999999999999965 488999999999999997
Q ss_pred CCCCe--E--EEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCc------eeeeee-------CCC
Q 010669 339 LSSGI--C--LTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQA------NVAKFD-------GHV 399 (504)
Q Consensus 339 ~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~~~~------~~~~~~-------~~~ 399 (504)
-.... . ..-............|+.+.|.| -|-.|++++.||.+|||+.-... ....+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52110 0 01111111224567899999999 68899999999999999875432 223332 355
Q ss_pred CCeEEEEEcCC---CcEEEEEeCC------cEEEEEcCCCc--ceeeeecCCCCCCeeEEEECCC----CCEEEEEeCc-
Q 010669 400 GAVTAISFSEN---GYYLATAAHD------GVKLWDLRKLK--NFRSFESSDSETPTNSVDFDHS----GSYLAVASAD- 463 (504)
Q Consensus 400 ~~i~~l~~s~~---g~~l~s~~~d------~v~vwd~~~~~--~~~~~~~~~~~~~v~~i~~~~~----g~~l~~~~~d- 463 (504)
.+..|+.|+|. ..+|+.|+.+ .++||...... ..+.-...++..+|+.++|.|+ -..||+++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67899999984 5689999877 48888765432 2222223355889999999995 3578999999
Q ss_pred EEEEEeeccC----------------ccceeEEEccCCCCCCceeEEEEeecCcccC
Q 010669 464 IRVYQVASVK----------------ADWNCIKTFPDLSGTGAASFLFLFVLGQTCS 504 (504)
Q Consensus 464 i~vw~~~~~~----------------~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~s 504 (504)
|+||.+.... -.-+.+..|.+| .+.|..+.+.-.|.+.|
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H--~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH--NGEVWRVRWNMTGTILS 304 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC--CCceEEEEEeeeeeEEe
Confidence 9999985211 123456778888 88999999988887653
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.8e-20 Score=165.97 Aligned_cols=276 Identities=14% Similarity=0.288 Sum_probs=203.6
Q ss_pred ccccCCCCCeEEEEecc-----CCCEEEEEeCCCcEEEEcCCCC---ceEEEcc--cCccceeEEEEeeC----CCEEEE
Q 010669 217 PLHKTSKPGIVSLDIHY-----SKDVIATGGVDTNAVLFDRPSG---QIVTTLS--GHSKKVTSVKFVTE----GDLFLT 282 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~-----~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~l~~s~~----~~~l~s 282 (504)
.+...|..+|..++|++ +...+++.|. ..+.+|..... ..+..+. .|......++|+-+ ..+++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 35667888999999985 2236666664 46888886543 3334442 36777888899753 347889
Q ss_pred EeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeE
Q 010669 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361 (504)
Q Consensus 283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 361 (504)
||.-|.|+|.|+..+ ++...+.+|...|+.+.++|+. ++++++|.|..|++|++++..++..+.. ..+|...|.
T Consensus 111 ~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVL 185 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVL 185 (385)
T ss_pred ecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEE
Confidence 999999999999886 7888889999999999999965 6899999999999999999999988853 568999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCce------e-------------------e---eeeCCCCCeEEEEEcCCCcE
Q 010669 362 SAAFHPDGLILGTGTSEALVKIWDVKSQAN------V-------------------A---KFDGHVGAVTAISFSENGYY 413 (504)
Q Consensus 362 ~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~------~-------------------~---~~~~~~~~i~~l~~s~~g~~ 413 (504)
++.|+++|.+|++++.|.+|++|++...+. . . +-..|...|.|+.| -|.+
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhh
Confidence 999999999999999999999999973211 0 0 11236677777877 4678
Q ss_pred EEEEeCCc-EEEEEcCCC-c-------------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccc
Q 010669 414 LATAAHDG-VKLWDLRKL-K-------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 476 (504)
Q Consensus 414 l~s~~~d~-v~vwd~~~~-~-------------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~ 476 (504)
+++-+-++ |..|..-+. + .+..++.....-.....+|+|-++.||.|... +.+||+......
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~- 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP- 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-
Confidence 88877777 999987221 1 12233333212223445677889999999876 999999553322
Q ss_pred eeEEEccCCCCCCceeEEEEeecCcc
Q 010669 477 NCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 477 ~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
...++..+.....|...+|+.+|.+
T Consensus 343 -~~ttl~~s~~~~tVRQ~sfS~dgs~ 367 (385)
T KOG1034|consen 343 -KCTTLTHSKSGSTVRQTSFSRDGSI 367 (385)
T ss_pred -cCceEEeccccceeeeeeecccCcE
Confidence 2333333334678999999999865
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3e-21 Score=197.71 Aligned_cols=244 Identities=19% Similarity=0.309 Sum_probs=193.5
Q ss_pred CCCeEEEEeccCCCE----EEEEeCCCcEEEEcCCC---C---ceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEE
Q 010669 223 KPGIVSLDIHYSKDV----IATGGVDTNAVLFDRPS---G---QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRV 291 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~----l~sg~~dg~i~vwd~~~---~---~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~i 291 (504)
....+.++|.+.|.. |+.|..||.|.+||... + ..+.++..|++.|..+.|++. +++|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678999987764 89999999999999754 2 346677889999999999994 559999999999999
Q ss_pred EeCCCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-
Q 010669 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG- 369 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg- 369 (504)
||+.......... -....+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+... .....+..++|||++
T Consensus 144 WDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~---~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT---PGRMHCSVLAWHPDHA 219 (1049)
T ss_pred eccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC---CCccceeeeeeCCCCc
Confidence 9998743211111 1234578999999864 457888999999999999999887777633 223568899999966
Q ss_pred CEEEEEeCCC---cEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669 370 LILGTGTSEA---LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443 (504)
Q Consensus 370 ~~l~~g~~dg---~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~ 443 (504)
..+++++.|. .|.+||+|.. .++..+.+|...|.++.|++.+ .+|++++.|+ |.+|+..+++.+..+... ..
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n 297 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN 297 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence 4555555543 6999999864 5788889999999999999965 8999999998 999999999998888764 67
Q ss_pred CeeEEEECCCCC-EEEEEeCc--EEEEEeecc
Q 010669 444 PTNSVDFDHSGS-YLAVASAD--IRVYQVASV 472 (504)
Q Consensus 444 ~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~ 472 (504)
++..+.|+|... .+++++-| |.||.+...
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 999999999876 66666666 999988543
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3e-21 Score=197.73 Aligned_cols=261 Identities=15% Similarity=0.247 Sum_probs=198.3
Q ss_pred EEEeccCCC-EEEEE----------eCCCcEEEEcCCC--Cc----eEEEcccCccceeEEEEeeCCCE----EEEEeCC
Q 010669 228 SLDIHYSKD-VIATG----------GVDTNAVLFDRPS--GQ----IVTTLSGHSKKVTSVKFVTEGDL----FLTGSAD 286 (504)
Q Consensus 228 ~~~~s~~~~-~l~sg----------~~dg~i~vwd~~~--~~----~~~~~~~h~~~v~~l~~s~~~~~----l~s~s~d 286 (504)
.++|+|.+. ++++| +.+.++-+|.+.. .+ .+..+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 577888876 55554 2345556665432 22 233333 2356789999986664 8888999
Q ss_pred CcEEEEeCCC---CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669 287 KTVRVWQGSE---DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 287 g~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (504)
|.|.+||... +.....+.+...|.+.|..+.|++.. +.+++|+.||.|.|||+.+.+...... .......|.+
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~ 166 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKC 166 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceE
Confidence 9999999765 34445667778999999999999965 499999999999999998855444432 2234578999
Q ss_pred EEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCC--CeEEEEEcCCC-cEEEEEeCC-c---EEEEEcCCCc-ce
Q 010669 363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVG--AVTAISFSENG-YYLATAAHD-G---VKLWDLRKLK-NF 433 (504)
Q Consensus 363 ~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~g-~~l~s~~~d-~---v~vwd~~~~~-~~ 433 (504)
++|+. ..++|++++.+|.+.|||+|..+++..+..+.+ .+..+.|+|++ ..|+++++| + |.+||+|... .+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 99998 667899999999999999999988888876544 57889999975 445555544 3 9999999754 45
Q ss_pred eeeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 434 RSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 434 ~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
+.+..| ...|.++.|++.+ .+|++++.| +.+|+. ++++.+..+..- .+.+..+.|+|..
T Consensus 247 k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~----~tgEvl~~~p~~--~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 247 KILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNP----NTGEVLGELPAQ--GNWCFDVQWCPRN 308 (1049)
T ss_pred hhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecC----CCceEeeecCCC--CcceeeeeecCCC
Confidence 556555 7899999999977 888899988 888987 778899999874 6788888888754
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=173.58 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=191.1
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
++.+....|.+++|+ ++..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+..++.|+.||.+..++...+
T Consensus 64 i~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred EecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 455556789999999 5667788888999999999999999999999999999999999999999999997777776653
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec--CCCC-CCCCCeEEEEECCCCCEEEE
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTD-GRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~pdg~~l~~ 374 (504)
.......+.-..++|.+++|+|++..+++|+.||.|++||..++........ .... ....-|.++.|-.++ .|++
T Consensus 143 -~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s 220 (691)
T KOG2048|consen 143 -KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS 220 (691)
T ss_pred -eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE
Confidence 2333444555678999999999999999999999999999999987773321 1111 133457778877555 6899
Q ss_pred EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc--eeeeecCCCCCCeeEEEEC
Q 010669 375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 375 g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~ 451 (504)
|.+.|+|.+||...+..+..+..|.+.|.+++..+++.++++++.|+ |..|...+.+. +.......|...+.+++..
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 99999999999999999999999999999999999999999999998 76676655433 1111112235578888777
Q ss_pred CCCCEEEEEeCc
Q 010669 452 HSGSYLAVASAD 463 (504)
Q Consensus 452 ~~g~~l~~~~~d 463 (504)
++ .+++||.|
T Consensus 301 ~~--~l~sgG~d 310 (691)
T KOG2048|consen 301 EN--ALISGGRD 310 (691)
T ss_pred cc--eEEeccee
Confidence 65 77777777
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.5e-19 Score=165.64 Aligned_cols=159 Identities=19% Similarity=0.374 Sum_probs=128.8
Q ss_pred CCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCC---------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669 223 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (504)
Q Consensus 223 ~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw 292 (504)
..+|.++.|.+++. .+++|+.|..|++|.+..+ +....+..|...|+++.|+|+|++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999776 9999999999999986532 2345677899999999999999999999999999999
Q ss_pred eCC--------C-----CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669 293 QGS--------E-----DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 293 d~~--------~-----~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (504)
-.. + ...+.....+.+|...|..++|+|++.++++++.|..+++||+..|+....+. .|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-----dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-----DHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-----ccccc
Confidence 765 2 22356667788999999999999999999999999999999999998877765 55556
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEc
Q 010669 360 YTSAAFHPDGLILGTGTSEALVKIWDV 386 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~I~iwd~ 386 (504)
+..++|.|-++++++-+.|...+.+++
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeee
Confidence 666666666666666555554444443
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.5e-20 Score=172.51 Aligned_cols=208 Identities=19% Similarity=0.347 Sum_probs=166.2
Q ss_pred ccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCC
Q 010669 219 HKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~ 296 (504)
..+|.+.|.++.|+..- +.||+||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 34688889999998764 5899999999999999999999999999999999999998 567899999999999999985
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECC-CCCEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILG 373 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~ 373 (504)
........ ...+.|-.++|+|.. ..+++++.||+++-+|+|.. +++..+. .|..+|.++++++ ...+++
T Consensus 319 ~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-----AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-----AHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-----eccCCcceEEecCCCCccee
Confidence 32212222 235779999999854 57888889999999999986 6677665 7889999999999 556889
Q ss_pred EEeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCccee
Q 010669 374 TGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFR 434 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~ 434 (504)
+++.|+.|++|++....+ +..-.-.-+...|.++.|+- .+|+.|+..+ ++|||+.+...+.
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 999999999999865433 22111122346777888864 5677788777 9999998876544
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.7e-20 Score=177.24 Aligned_cols=257 Identities=18% Similarity=0.220 Sum_probs=195.6
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--------CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~ 290 (504)
...|.+.|.++.|++....|++++.||++.+|++.. -+.+.+|.+|.++|.|+++.+++..+++|+.||+|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 456788999999999999999999999999999932 256788999999999999999999999999999999
Q ss_pred EEeCCCCCC-------cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669 291 VWQGSEDGN-------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (504)
Q Consensus 291 iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (504)
.|++..... ......+.||.+.|+.+++|+....|++++.||+++.|+...... ..+... .......++
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~---~e~g~Plsv 445 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP---KEHGYPLSV 445 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc---cccCCcceE
Confidence 997653211 133456779999999999999999999999999999999876655 222211 111234555
Q ss_pred EECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeCC-------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669 364 AFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGH-------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (504)
Q Consensus 364 ~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~ 434 (504)
++-... .+.++....+.-.++|+.....+..+... ...+..+.++|++.+.+++..+. |+++|..++..+.
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 554432 23333333344444555544444444321 13577889999999999999998 9999999999988
Q ss_pred eeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCC
Q 010669 435 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 435 ~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h 485 (504)
....+ ...++++++.|+|.+|++++.| +++|.+ ....++.....|
T Consensus 526 s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kl----d~k~~~~es~~~ 572 (577)
T KOG0642|consen 526 SMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKL----DVKTCVLESTAH 572 (577)
T ss_pred heeec--cceecceeecCCCceEEeecCCceeehhhc----cchheeeccccc
Confidence 88776 6789999999999999999999 999998 444555555444
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=5.4e-20 Score=170.85 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=170.2
Q ss_pred cCCCCceEEEcccCccceeEEEEeeCC--CEEEEEeCCCcEEEEeCCCC-CCcceeEEeccCCcCeEEEEEccCC-CEEE
Q 010669 251 DRPSGQIVTTLSGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATN-KYFV 326 (504)
Q Consensus 251 d~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~ 326 (504)
|+.+......++-+.+.|++++|+|.. +++++|..-|+|-+||+.+. ....-+..+..|..+|.++.|+|.+ ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333344445566688999999999944 57889999999999999532 2234556677899999999999954 6899
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEE
Q 010669 327 TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAI 405 (504)
Q Consensus 327 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l 405 (504)
+.|.||+|++-|++++..-..+.. +.....+..+.|+.+...++.|..=|...+||+|++.. ...+.-|...|++|
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhc---CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 999999999999987754333331 12345678899999888888888778999999998765 55566788899999
Q ss_pred EEcCC-CcEEEEEeCCc-EEEEEcCCCcceee--eecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 406 SFSEN-GYYLATAAHDG-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 406 ~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~--~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+++|- ..+|++++.|+ ++|||+|....-.. +....|...|.+..|+|+|..|++.+.| |+|||.
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 99994 67889999998 99999998655443 4445567899999999998888888888 999997
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=158.92 Aligned_cols=257 Identities=13% Similarity=0.185 Sum_probs=192.1
Q ss_pred eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEe
Q 010669 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd 293 (504)
...+..+|--+|++++||++|+.|++++.|..|.+||+..|.++..+. ...+|+.+.|+|. .+.+++.-.+..-.+-+
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVID 135 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence 334678899999999999999999999999999999999999888887 6788999999994 34444444444444555
Q ss_pred CCCCCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669 294 GSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 294 ~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
+.... ..++..-. .-+....+..|++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|..
T Consensus 136 ~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 136 FSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRF 210 (405)
T ss_pred ecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcE
Confidence 44311 01110000 011122334688999999999999999999999999988876321 357899999999999
Q ss_pred EEEEeCCCcEEEEEcCCC-------c--eeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeec
Q 010669 372 LGTGTSEALVKIWDVKSQ-------A--NVAKFDG--HVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~~~-------~--~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~ 438 (504)
|+..+.|..||.|+++.- + +.+.+.. ....-.+++|+.+|.|+++++... ++||.-..|..++.+.+
T Consensus 211 liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 211 LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 999999999999998621 1 1122211 123456789999999999998774 99999999999998887
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeE
Q 010669 439 SDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI 479 (504)
Q Consensus 439 ~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i 479 (504)
.. +.....+.|+|-...+++...+ ++||..... .+|...
T Consensus 291 ~k-gE~l~DV~whp~rp~i~si~sg~v~iw~~~~~-enwsaf 330 (405)
T KOG1273|consen 291 TK-GEELLDVNWHPVRPIIASIASGVVYIWAVVQV-ENWSAF 330 (405)
T ss_pred Cc-hhheeecccccceeeeeeccCCceEEEEeecc-cchhhc
Confidence 64 3567889999999999988777 999987442 345443
No 162
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.6e-19 Score=156.56 Aligned_cols=239 Identities=12% Similarity=0.190 Sum_probs=178.5
Q ss_pred CeEEEEeccCCCEE-EEEeCCCcEEEEcCCC---CceEE---------EcccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669 225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPS---GQIVT---------TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (504)
Q Consensus 225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~---~~~~~---------~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i 291 (504)
.-+.+.|+||-+-+ ++.-...++++|.+.. |.... .-+.|.-.|-.+-...++.+|++++.|..|.+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 46889999998744 4444556799997532 22111 11235555666666667889999999999999
Q ss_pred EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC---CCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~~~~~~pd 368 (504)
|++.. +.+..+......-+..+.+|+|+++++++..-.|++|.+- .|..........+.+|...|..++|+++
T Consensus 214 w~lkG----q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 214 WDLKG----QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred EecCC----ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 99984 5666666556667788899999999999999999999863 2222111112235699999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC-------Cceeeeee----CCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeee
Q 010669 369 GLILGTGTSEALVKIWDVKS-------QANVAKFD----GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE 437 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~-------~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~ 437 (504)
...+++.+.||.++|||+.- .+.+.++. .-.+....+.++|+|..|+.+....+++|..++++....+.
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH
Confidence 99999999999999999742 12222221 12234458999999999998877779999999988776665
Q ss_pred cCCCCCCeeEEEECCCCCEEEEEeCc-EEEEE
Q 010669 438 SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQ 468 (504)
Q Consensus 438 ~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~ 468 (504)
.. |...|.+++|+++|+|++++|+. ++++.
T Consensus 370 ~~-h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 370 DI-HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred Hh-hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 42 36789999999999999999988 88876
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.5e-19 Score=159.52 Aligned_cols=238 Identities=21% Similarity=0.335 Sum_probs=185.6
Q ss_pred CCCeEEEEec-------cCCCEEEEEeCCCcEEEEcCCCCceEEEccc--Ccc---ceeEEEEeeCCCEEEEEeCCCcEE
Q 010669 223 KPGIVSLDIH-------YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--HSK---KVTSVKFVTEGDLFLTGSADKTVR 290 (504)
Q Consensus 223 ~~~I~~~~~s-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~---~v~~l~~s~~~~~l~s~s~dg~i~ 290 (504)
...|...+|- |+.+++++.+.+.-|++||..+|+....+.+ |.. ...+++|+|||..|++| ...+|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 3457777775 6778999999999999999999998887763 433 34689999999998875 557999
Q ss_pred EEeCCCCCCcceeEEec-----cCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669 291 VWQGSEDGNYDCKHTLK-----DHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (504)
Q Consensus 291 iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (504)
++|+...+......... +..+.|.+++|+|.. ..+++|+....+-||.-..+.+...+. +|.+.|+.++
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-----gh~gGvThL~ 257 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-----GHGGGVTHLQ 257 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-----ccCCCeeeEE
Confidence 99995544322332222 336789999999954 589999999999999888888777765 7889999999
Q ss_pred ECCCCCEEEEEeC-CCcEEEEEcCCC-ceeeeeeCCCC-CeEEEEE--cCCCcEEEEEeCCc-EEEEEcCC-Ccceeeee
Q 010669 365 FHPDGLILGTGTS-EALVKIWDVKSQ-ANVAKFDGHVG-AVTAISF--SENGYYLATAAHDG-VKLWDLRK-LKNFRSFE 437 (504)
Q Consensus 365 ~~pdg~~l~~g~~-dg~I~iwd~~~~-~~~~~~~~~~~-~i~~l~~--s~~g~~l~s~~~d~-v~vwd~~~-~~~~~~~~ 437 (504)
|+++|+.|++|.. |..|..||+|.. .++..+..|.+ .-..|.| .|.|.+|++|+.+| |++||+.+ +..+..+.
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 9999999999875 678999999864 56777777765 3334544 57899999999999 99999998 55455555
Q ss_pred cCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669 438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 438 ~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
.+ ...++.++++|--.++++++.. ++|..
T Consensus 338 ~~--sd~vNgvslnP~mpilatssGq-r~f~~ 366 (406)
T KOG2919|consen 338 NY--SDTVNGVSLNPIMPILATSSGQ-RIFKY 366 (406)
T ss_pred cc--cccccceecCcccceeeeccCc-eeecC
Confidence 44 5689999999998888888766 44544
No 164
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=3.3e-19 Score=173.36 Aligned_cols=278 Identities=21% Similarity=0.311 Sum_probs=208.6
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw 292 (504)
+.-.+|.++|..++|+|.|++|++.|.|-+-++|-.-.. -.+..-+-|.-.++|++|-+....+++|.....+|+|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 356789999999999999999999999999999865411 1233345688889999998866678999999999999
Q ss_pred eCCC-------------------------------------------CCC------------------------------
Q 010669 293 QGSE-------------------------------------------DGN------------------------------ 299 (504)
Q Consensus 293 d~~~-------------------------------------------~~~------------------------------ 299 (504)
+... ++.
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 7110 000
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~ 374 (504)
+..++.+.+|.-.|.+++.+|+++++++++... .|++|+..+......+. +|.-.|+.++|+|||++|++
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEE
Confidence 112334668999999999999999999998754 58999998877776554 78889999999999999999
Q ss_pred EeCCCcEEEEEcCCCce----eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cceeeeecCCCCCCeeE
Q 010669 375 GTSEALVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSETPTNS 447 (504)
Q Consensus 375 g~~dg~I~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~~~~~~~~~~~~~v~~ 447 (504)
.+.|.++.+|....... ....+.|..-|.+..|+|++.++++++.|. |++|..... +.+..+........|+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 99999999999854321 223567999999999999999999999998 999999887 55555545555788999
Q ss_pred EEECCC----CC-EEEEEeCc--EEEEEeecc-----CccceeEEEccCC-CCCCceeEEEEeec
Q 010669 448 VDFDHS----GS-YLAVASAD--IRVYQVASV-----KADWNCIKTFPDL-SGTGAASFLFLFVL 499 (504)
Q Consensus 448 i~~~~~----g~-~l~~~~~d--i~vw~~~~~-----~~~~~~i~~~~~h-~~~~~v~~l~~~~~ 499 (504)
++|.|- .. .+++|-.. |.+|..... ..++.....+..+ .+.+.|.-+.+.|.
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 999772 23 45555554 888886411 1123333333322 12567777777765
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=3.8e-17 Score=163.61 Aligned_cols=262 Identities=27% Similarity=0.523 Sum_probs=209.9
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-eEEEcccCcc-ceeEEEE-eeCCC-EEEEEeC-CCcEEEEe
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSK-KVTSVKF-VTEGD-LFLTGSA-DKTVRVWQ 293 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~-~v~~l~~-s~~~~-~l~s~s~-dg~i~iwd 293 (504)
...|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+|+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 45678899999999999999999999999999998876 6677766443 7777777 77777 5555444 99999999
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-E
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-I 371 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-~ 371 (504)
.... ......+..|...|..+.|+|++.++++++. |+.+++|++..+.....+. +|...+.+++|+|++. +
T Consensus 141 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 141 LSTP--GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred ecCC--CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----cCCCceEEEEEcCCcceE
Confidence 9861 1566777899999999999999998888886 9999999999877776665 4778999999999998 5
Q ss_pred EEEEeCCCcEEEEEcCCCceee-eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc-eeeeecCCCCCCeeEE
Q 010669 372 LGTGTSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSV 448 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~-~~~~~~~~~~~~v~~i 448 (504)
+++++.|+.|++||...+..+. .+.+|.... ...|++++.++++++.++ +++||++.... ...+ ..+...+.++
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 290 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSV 290 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEE
Confidence 5555899999999998777777 688887775 448999998888888898 99999987665 4444 2336789999
Q ss_pred EECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc--CCCCCCceeEEEE
Q 010669 449 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP--DLSGTGAASFLFL 496 (504)
Q Consensus 449 ~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~--~h~~~~~v~~l~~ 496 (504)
.|+|++..+++++.| +.+|+. .......... .| .+.+..+.+
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~ 336 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDL----ETGKLLSSLTLKGH--EGPVSSLSF 336 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEc----CCCceEEEeeeccc--CCceEEEEE
Confidence 999999998888888 899977 3344444433 66 556777777
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.7e-19 Score=158.54 Aligned_cols=255 Identities=16% Similarity=0.265 Sum_probs=182.5
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC-cC
Q 010669 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AE 312 (504)
Q Consensus 236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~ 312 (504)
..+|++..+|.|++||..+++.+..++++...++.+.|.. .+..+.+|+.||+|++||++.... .....+..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhheeccCCCCCc
Confidence 5788888999999999999999999999999999999987 456799999999999999988543 2333344554 45
Q ss_pred eEEEEEccCCCEEEEEeC----CCeEEEEECCCCeE-EEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEc
Q 010669 313 VQAVTVHATNKYFVTASL----DNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV 386 (504)
Q Consensus 313 v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~ 386 (504)
..+++.+-.++.+++|+. |-.+.+||++..+. +..+. ..|...|+++.||| +.++|++|+.||.|.+||+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN----ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh----hhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 677777767788888764 67899999998876 44443 37888999999999 7789999999999999999
Q ss_pred CCCc---eeeeeeCCCCCeEEEEEcCCCc-EEEEEeCC-cEEEEEcCCCcceeeeecCCC----------CCCeeEEEEC
Q 010669 387 KSQA---NVAKFDGHVGAVTAISFSENGY-YLATAAHD-GVKLWDLRKLKNFRSFESSDS----------ETPTNSVDFD 451 (504)
Q Consensus 387 ~~~~---~~~~~~~~~~~i~~l~~s~~g~-~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~----------~~~v~~i~~~ 451 (504)
+... .+...-.|...|.++.|..+++ .|.+-+.. +..+|++..+.+...+..+.. ...+......
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 7642 2222334777899999999882 34444555 499999998876555544321 1112222222
Q ss_pred CCCCEEEEEeCc---EEEEEee--ccCccceeEEEccCCCCCCceeEEEE
Q 010669 452 HSGSYLAVASAD---IRVYQVA--SVKADWNCIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 452 ~~g~~l~~~~~d---i~vw~~~--~~~~~~~~i~~~~~h~~~~~v~~l~~ 496 (504)
.++..++.++.+ +.++-+. ......+.+..+.+| +...|.++.|
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~ 324 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILF 324 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhh
Confidence 345566666554 6666553 333456667777774 2444544433
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.7e-18 Score=144.50 Aligned_cols=229 Identities=19% Similarity=0.309 Sum_probs=175.3
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCC---------C-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPS---------G-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~---------~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
|.+-+|+|.+++|++|..+|.|.++.+.+ + ..+-..++|.++|+.++|. ..+|++|+. |.|+-|...
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeeh
Confidence 55667899999999999999999998753 1 2345568999999999997 456777654 999999765
Q ss_pred CCCC-------cceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669 296 EDGN-------YDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 365 (504)
Q Consensus 296 ~~~~-------~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 365 (504)
.... ++..... ...-..|+++...|..+-++.++.|+.++-||+++|+....+. +|...+.++.-
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-----GHtDYvH~vv~ 164 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-----GHTDYVHSVVG 164 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-----CCcceeeeeee
Confidence 4321 1111001 1122468999999988888888899999999999999988887 88899999998
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC---------CC-CCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceee
Q 010669 366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDG---------HV-GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRS 435 (504)
Q Consensus 366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~---------~~-~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~ 435 (504)
-.....+++|++||++|+||.++++.+..+.. |. ..|.+++. +..+|++|+.-.+.+|.++..++...
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEE
Confidence 66556789999999999999999998877643 22 24666665 66799988877799999999999988
Q ss_pred eecCCCCCCeeEEEECCCCCEEEEEe-Cc-EEEEEe
Q 010669 436 FESSDSETPTNSVDFDHSGSYLAVAS-AD-IRVYQV 469 (504)
Q Consensus 436 ~~~~~~~~~v~~i~~~~~g~~l~~~~-~d-i~vw~~ 469 (504)
+..+ ..+..+.|..+ .+++++ .+ +.-|.+
T Consensus 243 fpip---a~v~~v~F~~d--~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 243 FPIP---ARVHLVDFVDD--CVLIGGEGNHVQSYTL 273 (325)
T ss_pred Eecc---cceeEeeeecc--eEEEeccccceeeeee
Confidence 8875 56888888643 344444 33 888876
No 168
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=4e-20 Score=171.95 Aligned_cols=258 Identities=20% Similarity=0.316 Sum_probs=209.9
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
+-+.+.++.+|+.|+.|+..|.|-.+|..++++...+.. ...|.++.|..+.++++++-. .-+.|||-.. ..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G----tElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNG----TELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCC----cEEe
Confidence 346789999999999999999999999999999888773 466999999988887777654 5799998654 4555
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw 384 (504)
-++.| ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+. ...+.+..++-+|-...+-+|..+|+|.+|
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCCccceEEEcCCCceEEec
Confidence 55555 568999999988899999999999999999999988876 234578889999999999999999999999
Q ss_pred EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
...+.+++..+-.|.++|.+|++.++|+|+++.+.|. ++|||+|+...+.++.. ..+...++||..|-+.++-|..
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~SqkglLA~~~G~~ 355 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKGLLALSYGDH 355 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCccccccccccceeeecCCe
Confidence 9999999999999999999999999999999999998 99999999887777765 2467788888776544444444
Q ss_pred EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 464 IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 464 i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
+.||.=... .++..-..+-.|.-.+.|..+.|+|
T Consensus 356 v~iw~d~~~-~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 356 VQIWKDALK-GSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred eeeehhhhc-CCCCCCcchhhhccCcccccceecc
Confidence 999953211 1223344455665567888888886
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.9e-18 Score=157.82 Aligned_cols=230 Identities=20% Similarity=0.340 Sum_probs=176.0
Q ss_pred eccccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeC-CCEEEEEeCC
Q 010669 216 HPLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSAD 286 (504)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~d 286 (504)
+++..+|+.+|..++|+|- ...||+||.|.+|.||.+..+ +.+..+.+|...|.-++|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 4678899999999999994 568999999999999998754 446778899999999999995 4579999999
Q ss_pred CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (504)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (504)
.+|.+||+.++ ....++. |.+.|+++.|+.+|.+|++.+.|+.|+|||.++++.+..-.. ..+ ..-..+.|-
T Consensus 154 n~v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~--heG--~k~~Raifl 225 (472)
T KOG0303|consen 154 NTVSIWNVGTG---EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA--HEG--AKPARAIFL 225 (472)
T ss_pred ceEEEEeccCC---ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc--ccC--CCcceeEEe
Confidence 99999999987 4555565 999999999999999999999999999999999988776532 112 234566788
Q ss_pred CCCCEEEEEe---CCCcEEEEEcCCCce---eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCccee-eee
Q 010669 367 PDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFR-SFE 437 (504)
Q Consensus 367 pdg~~l~~g~---~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~-~~~ 437 (504)
.+|.++-+|. ++..+-+||..+-+. ...+.. .+.|.---|.++...++.++.+ + |+.|.+....+.. -+.
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred ccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 8888666664 467899999866432 334443 3456666688888877766654 5 9999998765432 222
Q ss_pred cCCCCCCeeEEEECCCC
Q 010669 438 SSDSETPTNSVDFDHSG 454 (504)
Q Consensus 438 ~~~~~~~v~~i~~~~~g 454 (504)
......+-..+.|-|..
T Consensus 305 ~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 305 TFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ccccCCccccccccccc
Confidence 22224455667777654
No 170
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=4.2e-18 Score=151.78 Aligned_cols=235 Identities=19% Similarity=0.226 Sum_probs=188.9
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 299 (504)
..+|+|.+|++|+..+|++-.+..|.||..... +...+++.|...|+++.|+|..+.|++|+.|..-.||....++.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999987655 46788999999999999999999999999999999999977788
Q ss_pred cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
++....+..++..++++.|+|.++.|++||....|.+|-++..+....-+.. ...+.+.|++++|||++-+|++|+.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi-kkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI-KKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh-CCccccceeeeeccCCcceecccccCc
Confidence 8888888899999999999999999999999999999988765543222111 124567899999999999999999999
Q ss_pred cEEEEEcC-----C-------------CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-ceeeeecC
Q 010669 380 LVKIWDVK-----S-------------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRSFESS 439 (504)
Q Consensus 380 ~I~iwd~~-----~-------------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~ 439 (504)
..+||..- . |+.+.++....+.|..+.|+|+|..|+-.+.|+ +.+-|..... .+......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99999741 1 122344444567899999999999999999998 8888876554 23333332
Q ss_pred CCCCCeeEEEECCCCCEEEEE
Q 010669 440 DSETPTNSVDFDHSGSYLAVA 460 (504)
Q Consensus 440 ~~~~~v~~i~~~~~g~~l~~~ 460 (504)
..+..++.|-.+...+++|
T Consensus 249 --~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 249 --QLPLLSVSWISENSVVAAG 267 (361)
T ss_pred --cCCceeeEeecCCceeecC
Confidence 3567777776554444433
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=5.3e-17 Score=158.12 Aligned_cols=265 Identities=15% Similarity=0.202 Sum_probs=174.7
Q ss_pred CCeEEEEeccCCCEEEEEe-CCCcEEEEcCC-CCce--EEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCCC
Q 010669 224 PGIVSLDIHYSKDVIATGG-VDTNAVLFDRP-SGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG 298 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~-~dg~i~vwd~~-~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~~ 298 (504)
+....++++|++++|++++ .++.|.+|++. ++.. +.... ..+....++|+|+++++++++. ++.|.+|++...+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4566789999999887664 57889999986 3432 22222 2335678999999998887764 8899999997533
Q ss_pred Cc-ceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 299 NY-DCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVS-DAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 299 ~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
.. .....+. +.....+++++|+++++++++ .++.|.+||+.+...+.... .............+.|+|+|++++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 21 2223232 234467889999999886655 56899999998743221100 00000112346789999999999888
Q ss_pred eC-CCcEEEEEcCC--Cc--eeeeeeCC------CCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcc----eeeeec
Q 010669 376 TS-EALVKIWDVKS--QA--NVAKFDGH------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN----FRSFES 438 (504)
Q Consensus 376 ~~-dg~I~iwd~~~--~~--~~~~~~~~------~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~----~~~~~~ 438 (504)
+. ++.|.+||+.. ++ .+..+..+ ......+.|+|+|++|+++... + |.+|++..... +..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 22 23333221 1123468999999999998654 4 99999865332 222222
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669 439 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 439 ~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~ 496 (504)
......+.|+|+|++|++++. + |.+|+++........+..+.. .....++.|
T Consensus 273 ---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~---g~~P~~~~~ 327 (330)
T PRK11028 273 ---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV---GQGPMWVSV 327 (330)
T ss_pred ---cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc---CCCceEEEE
Confidence 234568999999999998875 3 999998654444555665543 334566665
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=151.09 Aligned_cols=250 Identities=19% Similarity=0.327 Sum_probs=181.0
Q ss_pred CCCcEEEEcCCCC--ce-EEEcccCccceeEEEEee-CCCEEEEEeCC-------CcEEEEeCCCCCC------cceeEE
Q 010669 243 VDTNAVLFDRPSG--QI-VTTLSGHSKKVTSVKFVT-EGDLFLTGSAD-------KTVRVWQGSEDGN------YDCKHT 305 (504)
Q Consensus 243 ~dg~i~vwd~~~~--~~-~~~~~~h~~~v~~l~~s~-~~~~l~s~s~d-------g~i~iwd~~~~~~------~~~~~~ 305 (504)
.|+.|.+.++..+ .+ -..|..|.+.|+.++-+| +...|+++..+ -.+.||.+...-. +.++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3566777665443 22 234567889999999999 45556665432 2467999875421 233444
Q ss_pred ec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcE
Q 010669 306 LK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALV 381 (504)
Q Consensus 306 ~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I 381 (504)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+......++....++-+|+| ||+.+++. .|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence 43 4556899999999999988876 88999999998776 44444333334567789999999 88888775 68999
Q ss_pred EEEEcCCCceeeeee-CCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCC-CCE
Q 010669 382 KIWDVKSQANVAKFD-GHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHS-GSY 456 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~-g~~ 456 (504)
..||+|+.+....+. .|...|..+.|+|+- .+|+++++|+ |++||.|+.+ ++..+..| ...|+++.|+|. .++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H--sHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH--SHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC--ceEEEEEEecCccceE
Confidence 999999988776664 588889999999985 5678888888 9999999765 44455444 679999999995 577
Q ss_pred EEEEeCc--EEEEEeeccCc-------------------------cceeEEEccCCCCCCceeEEEEee
Q 010669 457 LAVASAD--IRVYQVASVKA-------------------------DWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~~~~-------------------------~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
+++||.| |.+|...+.+. .-..+.+|..| ++.|.+++++.
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh--EDSVY~~aWSs 340 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH--EDSVYALAWSS 340 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc--ccceEEEeecc
Confidence 8888888 88886543220 01245678888 88888888764
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=5.1e-18 Score=149.17 Aligned_cols=236 Identities=18% Similarity=0.263 Sum_probs=181.9
Q ss_pred CCCCCeEEEEeccCCC-----EEEEEeCCCcEEEEcCCC--Cce--EEEc-----ccCccceeEEEEee-CCCEEEEEeC
Q 010669 221 TSKPGIVSLDIHYSKD-----VIATGGVDTNAVLFDRPS--GQI--VTTL-----SGHSKKVTSVKFVT-EGDLFLTGSA 285 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~-----~l~sg~~dg~i~vwd~~~--~~~--~~~~-----~~h~~~v~~l~~s~-~~~~l~s~s~ 285 (504)
.|.-+++.+-|.|+.. +||+.+ ..+++|.+.. .+. ...+ ..+..++++..|+. +.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4677899999999863 566654 3799998863 221 1111 24667899999987 7789999999
Q ss_pred CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669 286 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (504)
Q Consensus 286 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (504)
|-+..|||++.+........+-.|..+|..++|...+ +.|++++.||.+++||++.......+.... ....+...++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC--CCCCcceeec
Confidence 9999999999863434566677999999999999754 589999999999999999887666555321 2246788999
Q ss_pred ECC-CCCEEEEEeCC-CcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcc------e
Q 010669 365 FHP-DGLILGTGTSE-ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN------F 433 (504)
Q Consensus 365 ~~p-dg~~l~~g~~d-g~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~------~ 433 (504)
|++ |-+++|+-..| ..|.|.|+|.. .++..+.+|.+.|+.++|.|. ...|+++++|. +.+||+...-. +
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 999 66777775544 57999999975 678899999999999999995 67899999998 99999975322 2
Q ss_pred eeeecCCCCCCeeEEEECC-CCCEEEEEeCc
Q 010669 434 RSFESSDSETPTNSVDFDH-SGSYLAVASAD 463 (504)
Q Consensus 434 ~~~~~~~~~~~v~~i~~~~-~g~~l~~~~~d 463 (504)
..+. ..++|+.+.|++ .+..++++...
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC
Confidence 2232 257899999996 46788877665
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.6e-18 Score=154.44 Aligned_cols=273 Identities=13% Similarity=0.175 Sum_probs=199.0
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC------CceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------GQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~i 291 (504)
..+|.+-|.++.|+.++++|++|+.|..+.+|++.. .+.+.... .|...|.|++|...+.++++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 456889999999999999999999999999999753 24444433 46689999999988889999999999999
Q ss_pred EeCCCCCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECC-
Q 010669 292 WQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP- 367 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p- 367 (504)
.|+++. +.+..+. ...+.|+.+..||..+.|++.+.+|.|.+||.+... ....+. ..........+.|+|
T Consensus 132 HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 132 HDIETK---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL---PANSGKNFYTAEFHPE 205 (609)
T ss_pred eecccc---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee---ecCCCccceeeeecCC
Confidence 999985 4444432 233589999999999999999999999999998765 222222 113345688999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCc-eeeeeeC---C---CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce-eeeec
Q 010669 368 DGLILGTGTSEALVKIWDVKSQA-NVAKFDG---H---VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF-RSFES 438 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~---~---~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~-~~~~~ 438 (504)
...+|++.+..+-+-+||.+... ++....+ - ...-.++.|+|+|..|.+--... -.+||+-..++. ..+..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 56788999999999999998653 3322221 1 22336788999999988877665 567888764442 22221
Q ss_pred CC----CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccc-------------------eeEEEccCCCCCCceeE
Q 010669 439 SD----SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW-------------------NCIKTFPDLSGTGAASF 493 (504)
Q Consensus 439 ~~----~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~-------------------~~i~~~~~h~~~~~v~~ 493 (504)
.. ....+.+++|..+.. +++|+.+ +++|.+......+ ..+..+.|| -+.+..
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--RSv~NQ 362 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--RSVPNQ 362 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--cccccc
Confidence 11 123466788876544 7888888 9999985432221 245677888 777888
Q ss_pred EEEeecC
Q 010669 494 LFLFVLG 500 (504)
Q Consensus 494 l~~~~~g 500 (504)
+.|++-.
T Consensus 363 VRF~~H~ 369 (609)
T KOG4227|consen 363 VRFSQHN 369 (609)
T ss_pred eeecCCc
Confidence 8887654
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=179.39 Aligned_cols=242 Identities=17% Similarity=0.285 Sum_probs=190.7
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..+|.+.|+|+.|...|.++++|+.|..++||...++.++....||.+.|+.++.+.+..++++++.|..|++|.+..+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~- 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG- 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-
Confidence 4578999999999999999999999999999999999999999999999999999988889999999999999999886
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE--------------eec--C---------CC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ--------------VSD--A---------GT 353 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~--------------~~~--~---------~~ 353 (504)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+.. +.. . ..
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 7788889999999999999854 788999999999871111110 000 0 00
Q ss_pred CCCCCCeEEEEECCCCCEEEEEe-----------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc
Q 010669 354 DGRPEGYTSAAFHPDGLILGTGT-----------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG 421 (504)
Q Consensus 354 ~~~~~~v~~~~~~pdg~~l~~g~-----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~ 421 (504)
......+.+++|...+..++++. .+-.+.+|++.++...+.+.+|...+..+.++| |.....+++.||
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 01112233445555444455544 344578899999999999999999999999999 566677888888
Q ss_pred -EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669 422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
..|||+-.+.+++.+... .+.+..-.|+++|..++....-..+|-+
T Consensus 419 st~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 419 STIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEe
Confidence 999999999988887754 4677788999999988765544444443
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=5.5e-17 Score=147.45 Aligned_cols=237 Identities=17% Similarity=0.284 Sum_probs=179.9
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC--CcEEEEeCCCCCCc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNY 300 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~ 300 (504)
...+..+.|+.+...|..|+.|| .++|+................|..+-|+ ..+++..+.+ ..+++++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~--- 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK--- 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC---
Confidence 45677888999999999999998 6778766544322222223345555664 4455555543 35888988764
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--CC
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SE 378 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--~d 378 (504)
..+..+ .....|.++.++ .+.|+++-.+. |+|||+++.+.+.++... ..+...+..+.+++.+.+++.-+ ..
T Consensus 79 ~~ICe~-~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 79 TTICEI-FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ceEEEE-ecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCCCCceEEecCCCCC
Confidence 222222 134678899886 45666665544 999999999999888642 13445677777777888888643 46
Q ss_pred CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
|.|.+||..+-+++..+..|.+++.+++|+++|.+||++++.| |+||.+.+++.+..|........|.+++|+|++++
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 8999999999999999999999999999999999999999998 99999999999988876544567899999999999
Q ss_pred EEEEeCc--EEEEEeec
Q 010669 457 LAVASAD--IRVYQVAS 471 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~ 471 (504)
|++.|+. |+||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 9988876 99999854
No 177
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=1.7e-17 Score=166.00 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=178.9
Q ss_pred CCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCce--EEE----cccCccceeEEEEeeCC--CEEEEEeCCCcEEE
Q 010669 221 TSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQI--VTT----LSGHSKKVTSVKFVTEG--DLFLTGSADKTVRV 291 (504)
Q Consensus 221 ~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~--~~~----~~~h~~~v~~l~~s~~~--~~l~s~s~dg~i~i 291 (504)
...+.|+|+.|+|. .++++.|..+|.|.+||+..+.. ... ...|..+++.+.|..+. .-+++++.||.|..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 34678999999994 56888899999999999987654 222 23688999999997644 34999999999999
Q ss_pred EeCCCCCCcceeE---Eec------cCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEE--Eee-cCCCCCCCC
Q 010669 292 WQGSEDGNYDCKH---TLK------DHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLT--QVS-DAGTDGRPE 358 (504)
Q Consensus 292 wd~~~~~~~~~~~---~~~------~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-~~~~~~~~~ 358 (504)
|+++.-....... ... .....++++.|.+. .+.|+.|+.+|.|..-+......-. .+. ......|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 9876532111100 000 12246889999984 5689999999998873322221111 111 112346788
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcc--e
Q 010669 359 GYTSAAFHPDGLILGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN--F 433 (504)
Q Consensus 359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~--~ 433 (504)
.|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||-. ..|+++..+| +.+||+..... +
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 99999999966555444459999999988 777888888888889999999965 5666667678 99999986543 3
Q ss_pred eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 434 ~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
.+.... ....+.+.|+++|+.|++|... +.+|++
T Consensus 480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 333333 4567788999999999999987 888888
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.8e-17 Score=165.19 Aligned_cols=234 Identities=16% Similarity=0.132 Sum_probs=165.1
Q ss_pred CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320 (504)
Q Consensus 244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 320 (504)
+..|.+||..... ...+..|...+.+..|+|||+.|+.++.+ ..|.+||+.++. ...+..+.+| ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCceeECC
Confidence 5789999986544 55667788889999999999998887654 369999997642 2233334343 44689999
Q ss_pred CCCEEEEEe-CCCeEEE--EECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCC-ceeeee
Q 010669 321 TNKYFVTAS-LDNTWCF--YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQ-ANVAKF 395 (504)
Q Consensus 321 ~~~~l~s~s-~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~-~~~~~~ 395 (504)
+|+.|+.++ .+|.+.| ||+.++... .+. .+...+....|+|||+.|+..+ .+|...||++... .....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPS-QLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeE-eec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 999888764 6776555 566666543 332 2334577899999999776554 5788888887542 222222
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccC
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK 473 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~ 473 (504)
.+.+ .+..|+|+|.+|+..+.+++.+||+.++........ .....+.|+|+|++|++++.+ ..+|.+..
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-- 402 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVS-- 402 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEE--
Confidence 3433 467899999999988877777899988765432211 123567899999999998877 77776533
Q ss_pred ccceeEEEccCCCCCCceeEEEEeec
Q 010669 474 ADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 474 ~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
..+..+..+.+| .+.+...+|+|-
T Consensus 403 ~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCC--CCCCCCcccCCC
Confidence 457788888887 677888888764
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.8e-17 Score=164.56 Aligned_cols=266 Identities=16% Similarity=0.263 Sum_probs=193.8
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccC---ccceeEEEEee--CCCEEEEEeCCCcEEEEeCCCC--
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED-- 297 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~~-- 297 (504)
+-..+.|+|-...++++...-.|.|||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4567788998889999987789999999999988877643 35688898875 4558999999999999974332
Q ss_pred CCcceeEEecc-------CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CC
Q 010669 298 GNYDCKHTLKD-------HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 369 (504)
Q Consensus 298 ~~~~~~~~~~~-------h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg 369 (504)
++.+.+....+ -.+.-.-+.|.....+|+++|.-..|+|||.........+.. +....++++.-+- .|
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~----~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY----GSSTLVTALSADLVHG 1221 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----CCCccceeecccccCC
Confidence 22233332221 111124456776666777777788999999998887777753 3345667665544 57
Q ss_pred CEEEEEeCCCcEEEEEcCCCc---eeeeeeCCCCC--eEEEEEcCCCcE-EEEEeCCc-EEEEEcCCCcce--eeeecCC
Q 010669 370 LILGTGTSEALVKIWDVKSQA---NVAKFDGHVGA--VTAISFSENGYY-LATAAHDG-VKLWDLRKLKNF--RSFESSD 440 (504)
Q Consensus 370 ~~l~~g~~dg~I~iwd~~~~~---~~~~~~~~~~~--i~~l~~s~~g~~-l~s~~~d~-v~vwd~~~~~~~--~~~~~~~ 440 (504)
+++++|..||.|++||.|... .+...+.|+.. |..+.+.++|.- |++|+.+| |++||+|..... ..+..+.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999998753 46677888876 999999998765 99999999 999999984222 2222221
Q ss_pred C-CCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCC-----CCCceeEEEEeec
Q 010669 441 S-ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS-----GTGAASFLFLFVL 499 (504)
Q Consensus 441 ~-~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~-----~~~~v~~l~~~~~ 499 (504)
. ++..+++..++....+|+|+.. |+||++ .++.+..+..+. ..+.++|+.|.|-
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~q~ikIy~~-----~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSAQLIKIYSL-----SGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCcceEEEEec-----ChhhhcccccCcccccCcCCCcceeeecch
Confidence 1 2348999999999999999977 999997 344444433321 1456788888763
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=3.5e-17 Score=143.99 Aligned_cols=263 Identities=16% Similarity=0.289 Sum_probs=186.9
Q ss_pred CeEEEEecc--C-CCEEEEEeC----CCcEEEEcC--CCCceEEEc-ccCccceeEEEEeeCCC-----EEEEEeCCCcE
Q 010669 225 GIVSLDIHY--S-KDVIATGGV----DTNAVLFDR--PSGQIVTTL-SGHSKKVTSVKFVTEGD-----LFLTGSADKTV 289 (504)
Q Consensus 225 ~I~~~~~s~--~-~~~l~sg~~----dg~i~vwd~--~~~~~~~~~-~~h~~~v~~l~~s~~~~-----~l~s~s~dg~i 289 (504)
+++++.|+. + +.+|+.|+. .+.|.|..+ .+++.+..- ..|.-+++.+.|.|+.. +|++++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 578888884 2 347888873 455666543 344444332 25888999999999653 455543 379
Q ss_pred EEEeCCCC-CCcceeEEe-----ccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCe
Q 010669 290 RVWQGSED-GNYDCKHTL-----KDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGY 360 (504)
Q Consensus 290 ~iwd~~~~-~~~~~~~~~-----~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v 360 (504)
|+|.+... ....+...+ ..+..+++++.|+. +.++|.++|-|-+..|||++++.. +++. +..|...|
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ----LIAHDKEV 199 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ----LIAHDKEV 199 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE----EEecCcce
Confidence 99998752 222222222 24667999999986 667999999999999999999733 2222 23788999
Q ss_pred EEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeee---eCCCCCeEEEEEcC-CCcEEEEEeCCc--EEEEEcCCC-cc
Q 010669 361 TSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSE-NGYYLATAAHDG--VKLWDLRKL-KN 432 (504)
Q Consensus 361 ~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~s~-~g~~l~s~~~d~--v~vwd~~~~-~~ 432 (504)
..++|...+ ..||+.+.||.||+||+|.......+ .....+...++|++ |-++|++-..|+ |.+.|+|.. ..
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 999999955 58899999999999999987543333 22245888999998 457888888885 999999964 35
Q ss_pred eeeeecCCCCCCeeEEEECCC-CCEEEEEeCc--EEEEEeeccCc-c-ceeEEEccCCCCCCceeEEEEee
Q 010669 433 FRSFESSDSETPTNSVDFDHS-GSYLAVASAD--IRVYQVASVKA-D-WNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 433 ~~~~~~~~~~~~v~~i~~~~~-g~~l~~~~~d--i~vw~~~~~~~-~-~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
+..+..| ...|+.++|.|. ...|+++|+| ..+||+....+ . ...+..+.. ++.|..+.+++
T Consensus 280 va~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a---~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 280 VARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA---GGEVNQIQWSS 345 (364)
T ss_pred eehhhcC--cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc---cceeeeeeecc
Confidence 5666655 789999999995 5788889988 99999966433 1 223444432 56777777764
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=2e-17 Score=145.34 Aligned_cols=239 Identities=19% Similarity=0.277 Sum_probs=174.9
Q ss_pred ccCCCCCeEEEEeccCC-CEEEEEeCC-------CcEEEEcCCCC---------ceEEEcc-cCccceeEEEEeeCCCEE
Q 010669 219 HKTSKPGIVSLDIHYSK-DVIATGGVD-------TNAVLFDRPSG---------QIVTTLS-GHSKKVTSVKFVTEGDLF 280 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~-~~l~sg~~d-------g~i~vwd~~~~---------~~~~~~~-~h~~~v~~l~~s~~~~~l 280 (504)
+..|.+.|..++-+|-. ++|+++..+ ..+.||.+... +++..+. .+-+.|.|+.|.|++..+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 34567789999988855 456655432 23678987532 2333443 455689999999999988
Q ss_pred EEEeCCCcEEEEeCCCCCCcceeEEe-----ccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 010669 281 LTGSADKTVRVWQGSEDGNYDCKHTL-----KDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT 353 (504)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (504)
++-. |..|.+|++...... ...+ ..|....++-+|+| +++.+++. .|+++..||+++.+....+..
T Consensus 139 asm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d--- 211 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED--- 211 (370)
T ss_pred EEec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh---
Confidence 8765 789999999876431 2221 13556678888988 67777765 578999999999887777753
Q ss_pred CCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCC
Q 010669 354 DGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRK 429 (504)
Q Consensus 354 ~~~~~~v~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~ 429 (504)
.|...+..+.|+|+. .+|++|+.||.|+|||.|.. .++..+.+|...|.++.|+|. ..++++|+.|. |.+|....
T Consensus 212 -AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 212 -AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred -hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 677789999999965 57889999999999999875 578899999999999999994 67888899897 98986532
Q ss_pred Cc-----------------------------ceeeeecCCCCCCeeEEEECCCCCEEE-EEeCcEEEE
Q 010669 430 LK-----------------------------NFRSFESSDSETPTNSVDFDHSGSYLA-VASADIRVY 467 (504)
Q Consensus 430 ~~-----------------------------~~~~~~~~~~~~~v~~i~~~~~g~~l~-~~~~di~vw 467 (504)
-. .+.++.. |...|++++|+.-..+++ +-+.|.|+.
T Consensus 291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEE
Confidence 11 1122332 367899999998777655 457774443
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.1e-15 Score=152.90 Aligned_cols=259 Identities=29% Similarity=0.541 Sum_probs=196.6
Q ss_pred CCeEEEEe-ccCCC-EEEEEeC-CCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCCC
Q 010669 224 PGIVSLDI-HYSKD-VIATGGV-DTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG 298 (504)
Q Consensus 224 ~~I~~~~~-s~~~~-~l~sg~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~~ 298 (504)
..+..+.+ ++++. +++..+. |+.+.+|+... ......+..|...|..++|+|++..+++++. |+.+++|+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 188 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG- 188 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-
Confidence 36777777 77787 5555444 99999999987 7888889999999999999999998888885 999999999874
Q ss_pred CcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEE-eecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGT 376 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~pdg~~l~~g~ 376 (504)
.....+.+|...|.+++|+|++. .+++++.|+.|.+||...+..... +. .|.... ...|+|++.++++++
T Consensus 189 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 189 --KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-----GHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred --ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-----CCCcce-eEeECCCCCEEEEec
Confidence 56777778999999999999998 555559999999999887766663 33 444443 338999998999999
Q ss_pred CCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669 377 SEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g 454 (504)
.|+.+++||++.... +..+.+|...+.++.|+|++..+++++.++ +.+||+.+...........+...+..+.|.+++
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 999999999987665 444467888999999999888888888888 999999887766655511224468889994333
Q ss_pred CEEEEE-eCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 455 SYLAVA-SAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 455 ~~l~~~-~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
..++.+ ..| +.+|++.. .........+ ..+..+.+.+
T Consensus 341 ~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~ 380 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDLRT----GKPLKTLEGH---SNVLSVSFSP 380 (466)
T ss_pred CEEEEeecCCCcEEeeecCC----CceeEEecCC---ceEEEEEECC
Confidence 566666 455 78898833 2233333332 1256666654
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=161.33 Aligned_cols=238 Identities=13% Similarity=0.217 Sum_probs=182.5
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
+..++|++.|+|++|+.||+.+++|+.|..|.+|+..-.. +..+ .|++.|-|+.|+|-...|++++-+ ..-+|....
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q 123 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ 123 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence 3467899999999999999999999999999999854222 2223 499999999999988889998764 467897765
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-----CE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----LI 371 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-----~~ 371 (504)
. .+... .....|.+.+|..||.+++.|-.+|+|.+-+-.... ...+.. ..+.+++|.+++|+|.. .+
T Consensus 124 K----~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~R--pgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 124 K----SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIER--PGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred h----hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-ceEEeC--CCCCCCCceEEEecCCCCCCccce
Confidence 2 22211 234578999999999999999999999998654333 333332 23567899999999943 47
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~ 450 (504)
+++..-+.++.+|.+ +|+.+..-+.-.-...|+.+.+||.+++.|+.|+ +.+|- |.|-.+-++... +.+|+.++.
T Consensus 196 ~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~--D~WIWtV~~ 271 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ--DSWIWTVQA 271 (1081)
T ss_pred EEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc--ceeEEEEEE
Confidence 777777788888877 4555543333444667999999999999999998 88884 556555555443 679999999
Q ss_pred CCCCCEEEEEeCc--EEEEEe
Q 010669 451 DHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 451 ~~~g~~l~~~~~d--i~vw~~ 469 (504)
.|++++++.|+.| +..|++
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCceEEEEEccCeeehhhh
Confidence 9999999999999 777776
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=4.5e-16 Score=151.63 Aligned_cols=256 Identities=12% Similarity=0.170 Sum_probs=168.2
Q ss_pred EEEEeCCCcEEEEcCCC-Cc--eEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669 238 IATGGVDTNAVLFDRPS-GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (504)
Q Consensus 238 l~sg~~dg~i~vwd~~~-~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (504)
+++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++...+......... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 445554 345678899999999887664 58899999997433333333332 23456
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc
Q 010669 314 QAVTVHATNKYFVTASL-DNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA 390 (504)
Q Consensus 314 ~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~ 390 (504)
..+.|+|+++++++++. ++.|.+||+++.. ....... . .+.....+++++|+|+++++++ .++.|.+||+.+..
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--I-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--c-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 78999999998888775 8899999997432 1111110 0 1123467789999998886554 56999999997633
Q ss_pred eee-------eeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCC--C--cceeeeecCC----CCCCeeEEEECCC
Q 010669 391 NVA-------KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRK--L--KNFRSFESSD----SETPTNSVDFDHS 453 (504)
Q Consensus 391 ~~~-------~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~--~--~~~~~~~~~~----~~~~v~~i~~~~~ 453 (504)
.+. ... .......+.|+|+|++++++.. ++ |.+||+.. + +.+..+.... .......+.|+|+
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111 1234678999999999988876 45 99999973 2 2233332211 1122346889999
Q ss_pred CCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 454 g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
|++++++... |.+|+++......+.+..+.. ......+.++++|+.
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKY 287 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCE
Confidence 9999998543 999999654434445554433 123457788888864
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7.4e-18 Score=155.74 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=152.2
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (504)
.+++|+.+|..|++|+.||+++||++.+...+.....|.+.|.++.|+|||++|++-+.| ..+||+..++. ++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~---~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA---ALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc---hhhhc
Confidence 689999999999999999999999998888888888899999999999999999999999 89999998862 33222
Q ss_pred c--cCCcCeEEEEEccCC---C--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669 307 K--DHTAEVQAVTVHATN---K--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379 (504)
Q Consensus 307 ~--~h~~~v~~l~~~p~~---~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg 379 (504)
. ........+.|+.++ . .++....-+.|..||+.....-..+...........|++++.++||++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2 223345667777666 2 23333445567777664332211111111112235799999999999999999999
Q ss_pred cEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669 380 LVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~ 428 (504)
.|.|++..+.+.++..+ .|...|+.+.|+|+.+++++.+.+. ..|..+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999888776664 6999999999999999999988876 7766654
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.9e-17 Score=159.48 Aligned_cols=233 Identities=16% Similarity=0.297 Sum_probs=169.1
Q ss_pred ccCCCEEEE--EeCCCcEEEEcCCCC-ce----EEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC----
Q 010669 232 HYSKDVIAT--GGVDTNAVLFDRPSG-QI----VTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN---- 299 (504)
Q Consensus 232 s~~~~~l~s--g~~dg~i~vwd~~~~-~~----~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~---- 299 (504)
+.+..++++ .+..|.|-||++... ++ +-.+. ....|+.+.|.| |...|++++.||.|++|.+..++.
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 334455544 355789999998642 22 22222 345699999999 777899999999999999876542
Q ss_pred cceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
......+..|...|+++.||| ..+.|++++.|.+|++||+.+++....+. +|...|..++|+|||+.+++.+.|
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-----gHtdqIf~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-----GHTDQIFGIAWSPDGRRIATVCKD 741 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-----cCcCceeEEEECCCCcceeeeecC
Confidence 234566789999999999999 45789999999999999999988777665 888999999999999999999999
Q ss_pred CcEEEEEcCCCc-eeeeeeCCC-CCeEEEEEcCCCcEEEEEeCC----c-EEEEEcCCCc--ceeeeecCCCCCCeeEEE
Q 010669 379 ALVKIWDVKSQA-NVAKFDGHV-GAVTAISFSENGYYLATAAHD----G-VKLWDLRKLK--NFRSFESSDSETPTNSVD 449 (504)
Q Consensus 379 g~I~iwd~~~~~-~~~~~~~~~-~~i~~l~~s~~g~~l~s~~~d----~-v~vwd~~~~~--~~~~~~~~~~~~~v~~i~ 449 (504)
|+|++|..+++. +++.-++.. ..--.|.|.-+|+++++.+-| . |.+||..+.. .+.+..... ...+.--.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~LvP~ 820 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPLVPH 820 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCcccccc
Confidence 999999998764 444433322 233467788899998887766 2 8899977643 333332211 12223335
Q ss_pred ECCCCCEEE-EEeCc--EEEEEeec
Q 010669 450 FDHSGSYLA-VASAD--IRVYQVAS 471 (504)
Q Consensus 450 ~~~~g~~l~-~~~~d--i~vw~~~~ 471 (504)
+++|.+.|+ +|-.| |.+|.+-.
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEecC
Confidence 677766655 45455 88888743
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-16 Score=158.10 Aligned_cols=281 Identities=16% Similarity=0.226 Sum_probs=206.9
Q ss_pred ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC----CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292 (504)
Q Consensus 217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw 292 (504)
.....|.-.++|.++||+++++++|..||.|.+|.-.. ......+.-|...|++++|+++|.+|++||..|.+.+|
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 34555666799999999999999999999999996332 23356677899999999999999999999999999999
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC------CCCCCeEEEEEC
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD------GRPEGYTSAAFH 366 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~ 366 (504)
.+.+++ ..-+..-.++|..+.++||+.+.+....|..|.+....+......+...... ...+-.+.++++
T Consensus 279 q~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 279 QLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred eecCCC----cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 998863 2333445688999999999999999999999999877655444443321110 123456789999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-----------CCCCeEEEEEcCCCcEEEEEe--------CCc---EEE
Q 010669 367 PDGLILGTGTSEALVKIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAA--------HDG---VKL 424 (504)
Q Consensus 367 pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~g~~l~s~~--------~d~---v~v 424 (504)
|..+.++..+..|.|.+||+-+.+.+..+.. +.-.++.++.+-+|.++++.- .|+ +++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 9777888888999999999988777665531 223578888888999999973 232 889
Q ss_pred EEcCCCc----ceeeeecCCCCCCeeEEEECCCCC-EEEEEeCc--EEEEEe------eccCccceeEEEccCCCCCCce
Q 010669 425 WDLRKLK----NFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQV------ASVKADWNCIKTFPDLSGTGAA 491 (504)
Q Consensus 425 wd~~~~~----~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~------~~~~~~~~~i~~~~~h~~~~~v 491 (504)
|-..... ....+..++....+..+..++... .+++++.| ++||.+ .+....|.|...-.-| ..++
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~--k~~i 512 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH--KTPI 512 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc--cCcc
Confidence 9765433 222333332233333444444444 77788777 999998 5555678887765456 7899
Q ss_pred eEEEEeecCccc
Q 010669 492 SFLFLFVLGQTC 503 (504)
Q Consensus 492 ~~l~~~~~g~~~ 503 (504)
++.+|+.||.+.
T Consensus 513 ~a~~fs~dGsll 524 (792)
T KOG1963|consen 513 TALCFSQDGSLL 524 (792)
T ss_pred cchhhcCCCcEE
Confidence 999999999653
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.4e-17 Score=158.03 Aligned_cols=230 Identities=20% Similarity=0.278 Sum_probs=173.8
Q ss_pred eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC--EEEEEeCCCeE
Q 010669 257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVTASLDNTW 334 (504)
Q Consensus 257 ~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i 334 (504)
+-..+.+|++.|.++...|.|.+|++|+.||+|+||.+.++ .|+.++. ..+.|.|++|+|.++ .|+++ .+..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCce
Confidence 34567899999999999999999999999999999999997 7888775 456899999999765 33333 33334
Q ss_pred EEEECCCCeEE----------------------EEeecC----------CCCCCCCCeEEEEECCCCCEEEEEeCC---C
Q 010669 335 CFYDLSSGICL----------------------TQVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTSE---A 379 (504)
Q Consensus 335 ~iwd~~~~~~~----------------------~~~~~~----------~~~~~~~~v~~~~~~pdg~~l~~g~~d---g 379 (504)
.|.+..-|..+ ...... -...|...|..+.||..|.+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 44443221000 000000 001355678999999999999997654 4
Q ss_pred cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459 (504)
Q Consensus 380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~ 459 (504)
.|.|+++.......-|.-..+.|.++.|+|...+|++++...|++||+.+...++.+... ...|.+++.+|.|.-|+.
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEE
Confidence 799999987766666655667899999999999999999999999999987777766544 568999999999999999
Q ss_pred EeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 460 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 460 ~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
|+.| +..||++..++ ..+++..| ...|++++|.+
T Consensus 625 gs~d~k~~WfDldlssk---Pyk~lr~H--~~avr~Va~H~ 660 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSK---PYKTLRLH--EKAVRSVAFHK 660 (733)
T ss_pred ecCCCeeEEEEcccCcc---hhHHhhhh--hhhhhhhhhcc
Confidence 9999 88889865544 44556666 66777777654
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=3.9e-17 Score=154.58 Aligned_cols=203 Identities=15% Similarity=0.261 Sum_probs=163.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (504)
.+.++.++.||.+.+.+- .++..+.+..|.+.|.+-.|+|+|.-|++++.||.|++|.-.. ....++.....+|.
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hHHHHHhhcCceeE
Confidence 357788889999999874 5777788899999999999999999999999999999998543 33344445667899
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 010669 315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK 394 (504)
Q Consensus 315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~ 394 (504)
|++|.|+.+.++.+- .+.+.|=-+.....+.... .|.+-|.++.|++..+++++|++|-..+|||- .|..+..
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-----AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~ 222 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-----AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFT 222 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccceeEEe-----ccCcEEEEeecCccccceeecCCceeEEeecc-cCccccc
Confidence 999999887666653 3456665665554454554 77889999999999999999999999999996 5677777
Q ss_pred eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 395 FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 395 ~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
-..|..+|++++|+|+ ..++.++.+.++ +..+ ..+.|..++|++||..+++|+..
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYNTAR------------FSSP-RVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeeeeee------------ecCC-CccceEEEEEcCCCceeeccccC
Confidence 7889999999999999 666777665555 2221 24679999999999999988877
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.7e-16 Score=134.28 Aligned_cols=222 Identities=11% Similarity=0.142 Sum_probs=159.5
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC-------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG-------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (504)
Q Consensus 267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (504)
.|..-+|+|.+++|+.|+.+|+|.+..+.... ....+...++|.++|+.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 46667889999999999999999999876421 113445568999999999998 55677766 499999877
Q ss_pred CCCeEE------EEeecC--CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC
Q 010669 340 SSGICL------TQVSDA--GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411 (504)
Q Consensus 340 ~~~~~~------~~~~~~--~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g 411 (504)
+..... ...... .....-..|+++...|..+-++.++.|+.++.||+.+|+...++++|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 543221 001000 000112358899999977666666799999999999999999999999999999985555
Q ss_pred cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC------CeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEcc
Q 010669 412 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSET------PTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFP 483 (504)
Q Consensus 412 ~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~------~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~ 483 (504)
..+++|++|| +++||+++++++..+...++.. .-+-.+..-+..+|++|+.- +.+|.+.+ .+-.++..++
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrs--se~t~vfpip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRS--SESTCVFPIP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccC--CCceEEEecc
Confidence 6788999999 9999999999988887644321 11124555677899998877 99999943 2334444444
Q ss_pred CCCCCCceeEEEEee
Q 010669 484 DLSGTGAASFLFLFV 498 (504)
Q Consensus 484 ~h~~~~~v~~l~~~~ 498 (504)
+| |..+.|..
T Consensus 247 a~-----v~~v~F~~ 256 (325)
T KOG0649|consen 247 AR-----VHLVDFVD 256 (325)
T ss_pred cc-----eeEeeeec
Confidence 43 55555543
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=4.7e-17 Score=141.38 Aligned_cols=245 Identities=13% Similarity=0.188 Sum_probs=185.0
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
+.|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .|...|+.+.-.|+ ..+.+-+.|+.+.+|++....
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 47888999999987665 8899999999999999988888887 67778888888876 568888999999999865410
Q ss_pred CcceeE-----------------------------------------------Ee----ccCCcCeEEEEEcc-CCC--E
Q 010669 299 NYDCKH-----------------------------------------------TL----KDHTAEVQAVTVHA-TNK--Y 324 (504)
Q Consensus 299 ~~~~~~-----------------------------------------------~~----~~h~~~v~~l~~~p-~~~--~ 324 (504)
+..++ .. .+..+.+.+..+.. ++. +
T Consensus 89 -~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 89 -FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred -eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 00000 00 01223455555432 233 5
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ce--eeee
Q 010669 325 FVTASLDNTWCFYDLSSGICLTQVSDA-----GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--AN--VAKF 395 (504)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~--~~--~~~~ 395 (504)
++.|-.+|.+.+||+.++..+..+... ....|..++.++.|.+.-..=++|+.+..+..|++... .. -...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 667788999999999998544443311 12357789999999986555667788888899988643 21 1122
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
.-.+-.|..+..-||++.+++++.|+ |+||..+++.++..+..| ...|.+++|+|+...+|+++.| |.+|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22345688999999999999999998 999999999999999887 5899999999999999999999 999986
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=2.9e-16 Score=140.14 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=163.8
Q ss_pred CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC-CCC
Q 010669 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL-SSG 342 (504)
Q Consensus 264 h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~-~~~ 342 (504)
...+|+|.+|++|+..++.+-....|.||.....+.++..+++..|...|++++|+|..+.|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999999887768999999999999999999999999999999999999998 444
Q ss_pred eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----eeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV----AKFDGHVGAVTAISFSENGYYLATAA 418 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~g~~l~s~~ 418 (504)
+-...+. ...++...+++.|+|.++.|++|+....|.||-+.....- +.-+.+.+.|+++.|+||+-+|++|+
T Consensus 89 ~Wkptlv---LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLV---LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred eecccee---EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 4333332 1245678999999999999999999999999987654322 22245678899999999999999999
Q ss_pred CCc-EEEEEcC-----C-------------CcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 419 HDG-VKLWDLR-----K-------------LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 419 ~d~-v~vwd~~-----~-------------~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
.|+ .+||..- . |..+..+. ...+.+..+.|+|+|..|+-.+.| +.+=|.
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 998 8888642 0 11222222 226789999999999999999988 766665
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=9.5e-17 Score=152.03 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=174.9
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEE-cCCCCceEEEcccCccceeEEEE-e-------eCCCEEEEEeCCCcEEEE
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLF-DRPSGQIVTTLSGHSKKVTSVKF-V-------TEGDLFLTGSADKTVRVW 292 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vw-d~~~~~~~~~~~~h~~~v~~l~~-s-------~~~~~l~s~s~dg~i~iw 292 (504)
|...|.|+.|+.+...+.+++++ .+.+| |+.+. ....+.-...-|....+ - .....|+.++.||.+.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh-~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDH-QIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccccceEEEeccCc-eEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 44456789999877777766544 55555 44332 22222211111111111 0 123468889999999998
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
+-.. +....+..|.+.+.+-.|+|+|.-+++++.||.|++|.- +|.....+. ....+|.|++|.|+.+-+
T Consensus 91 ~k~~----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-----Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 91 NKSA----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-----QNEESIRCARWAPNSNSI 160 (737)
T ss_pred cccc----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-----hcCceeEEEEECCCCCce
Confidence 7543 556677899999999999999999999999999999984 343333332 223579999999987766
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
+.+ ..+.+.|=.+.....+..++.|.+-|.++.|++...++++|++|- .++||-. |..+..-.. +..+|++++|.
T Consensus 161 l~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~--~ey~ITSva~n 236 (737)
T KOG1524|consen 161 VFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA--EEYAITSVAFN 236 (737)
T ss_pred EEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh--hccceeeeeec
Confidence 554 346777877777777888999999999999999999999999997 9999975 444444433 37899999999
Q ss_pred CCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669 452 HSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 452 ~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
|+ ..++.++.+ .+ |.. ...+.|..+++++||..+
T Consensus 237 pd-~~~~v~S~nt~R----------------~~~-p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 237 PE-KDYLLWSYNTAR----------------FSS-PRVGSIFNLSWSADGTQA 271 (737)
T ss_pred cc-cceeeeeeeeee----------------ecC-CCccceEEEEEcCCCcee
Confidence 99 556666655 44 211 136778888888888654
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5e-17 Score=154.32 Aligned_cols=221 Identities=21% Similarity=0.319 Sum_probs=166.8
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc-ccCccceeEEEEee--CCCEEEEEeCCCcEEEEeC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQG 294 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~ 294 (504)
...+|.+-|.|+.|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-| +.+.+++|..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 46789999999999999999999999999999999888887776 58999999999998 5568999999999999998
Q ss_pred CCCC-------CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeec-----CCCCCCCCCeE
Q 010669 295 SEDG-------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSD-----AGTDGRPEGYT 361 (504)
Q Consensus 295 ~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~v~ 361 (504)
.... ......-+..|...|..|+..|++ +.|.+++.||+|+-+|++....-..-.. ......--...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 7421 123445566899999999999988 7899999999999999986321110000 00001123467
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEEcCCC--------c----------eeeeee-CCC-----------CCeEEEEEcCC
Q 010669 362 SAAFHP-DGLILGTGTSEALVKIWDVKSQ--------A----------NVAKFD-GHV-----------GAVTAISFSEN 410 (504)
Q Consensus 362 ~~~~~p-dg~~l~~g~~dg~I~iwd~~~~--------~----------~~~~~~-~~~-----------~~i~~l~~s~~ 410 (504)
|+.++| +..+|++|+.|-..++||.|.. . ++..|. +|. ..++.+.|+||
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN 284 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN 284 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence 999999 6689999999999999995321 1 122221 221 12567899999
Q ss_pred CcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669 411 GYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 411 g~~l~s~~~d~-v~vwd~~~~~~~~~~~~ 438 (504)
|.-|++.-.+. |++||+..++....+..
T Consensus 285 GtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 285 GTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred CcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 98777665554 99999998876655543
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.1e-17 Score=155.71 Aligned_cols=219 Identities=20% Similarity=0.283 Sum_probs=163.7
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----------ceEEEcccCccceeEEEEeeCCCEEEEEeCCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg 287 (504)
-+++|.++|.|+++.+++..+++||.||+|+.|++... .....+.||++.|+.+++|+....|++++.||
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence 35789999999999999999999999999999965421 23456789999999999999888999999999
Q ss_pred cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCC--CCCCCeEEEE
Q 010669 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAA 364 (504)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~ 364 (504)
+++.|+...... +........+.-.++.+-... .+.++...-+.--++|++.......+...... .....+.-+.
T Consensus 419 Tvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 419 TVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred eEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 999999876432 111111122334555554332 23333333334444555555444444322111 1124578899
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669 365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 365 ~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~ 438 (504)
++|.+.+.+++..|+.|+++|..+++.+.....|...++++++.|+|-+|++++.|+ +++|.+....++.....
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 999999999999999999999999999999999999999999999999999999999 99999876666554443
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.7e-17 Score=149.44 Aligned_cols=194 Identities=22% Similarity=0.349 Sum_probs=153.9
Q ss_pred eEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669 269 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 348 (504)
Q Consensus 269 ~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (504)
.+++|+.+|..+++|+.||++|||++... ..+.....|...|.++.|+|||++|++.+.| ...||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999997664 5556667888999999999999999999999 9999999999766665
Q ss_pred ecCCCCCCCCCeEEEEECCCC-----CEEEEEeCCCcEEEEEcCCCce-----eeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669 349 SDAGTDGRPEGYTSAAFHPDG-----LILGTGTSEALVKIWDVKSQAN-----VAKFDGHVGAVTAISFSENGYYLATAA 418 (504)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~pdg-----~~l~~g~~dg~I~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~g~~l~s~~ 418 (504)
.. ...+..+..+.|+.|+ .+++.-..-+.|+.||+..... ..+...-...|++++.+++|++++.|+
T Consensus 224 t~---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 224 TP---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred CC---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 42 2445567788898877 3444445567788887754322 111111234799999999999999999
Q ss_pred CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669 419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470 (504)
Q Consensus 419 ~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~ 470 (504)
.+| |-|++..+.+.++.++. .|...|+.+.|+|+.+++++.+.+ ..|..+.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999 99999999887776554 346799999999999999988777 7777763
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3.8e-14 Score=129.18 Aligned_cols=190 Identities=14% Similarity=0.280 Sum_probs=149.1
Q ss_pred eEEEEeccCCCEEEEEeCC--CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669 226 IVSLDIHYSKDVIATGGVD--TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (504)
|.-+-|+ ..++|..+.+ ..+++++.+.+..+..+. ....|.+|.++ .+.|+++-.+ .|.|||+++. +.+
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~M---klL 119 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDM---KLL 119 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccc---eee
Confidence 4444455 5566655544 348999988887777766 45679999984 4567776665 4999999886 444
Q ss_pred EEec---cCCcCeEEEEEccCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 304 HTLK---DHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 304 ~~~~---~h~~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
+++. .+...+.++.+++.+.+++.-+ ..|.|.+||..+-+.+..+. .|.+.+.|++|+++|.+||+++..
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-----aH~~~lAalafs~~G~llATASeK 194 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-----AHKGPLAALAFSPDGTLLATASEK 194 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-----ecCCceeEEEECCCCCEEEEeccC
Confidence 4443 4556688888887778888643 46899999999998888886 788999999999999999999999
Q ss_pred Cc-EEEEEcCCCceeeeeeCC--CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669 379 AL-VKIWDVKSQANVAKFDGH--VGAVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (504)
Q Consensus 379 g~-I~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~ 429 (504)
|+ ||||.+.+|+.+.+|+.- ...|.+++|+|++.+|++.+..+ |.+|.+.+
T Consensus 195 GTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 195 GTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 96 699999999999999742 24688999999999999888777 99998864
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.8e-15 Score=135.07 Aligned_cols=230 Identities=19% Similarity=0.262 Sum_probs=162.6
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
..+.-++|++.-..++++..|-.|++|+-.. +....++ .....|+|++|-|.+ ..|+.|+.. -|.+|......+..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3577889999777889999999999999765 5545554 234679999999954 457777665 58999765432111
Q ss_pred -----------eeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669 302 -----------CKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (504)
Q Consensus 302 -----------~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg 369 (504)
.+....+| .+|+++.|++||..+++++. |..|.|||.+++..+.... .....++-+.|+|||
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-----~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-----KGLGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-----cCCCceeeEEEcCCC
Confidence 11222345 67999999999999999886 5689999999987765542 123568899999999
Q ss_pred CEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCc----c-----------e
Q 010669 370 LILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK----N-----------F 433 (504)
Q Consensus 370 ~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~----~-----------~ 433 (504)
.+|++++-|+..++|+... .....-.- ..+.|...+|+|+|.+|+....+.-++|.+.-.. . +
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred CEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeee
Confidence 9999999999999996543 33332222 3458999999999998887776654445432110 0 0
Q ss_pred eeeec---C----CCCCCeeEEEECCCCCEEEEEeC
Q 010669 434 RSFES---S----DSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 434 ~~~~~---~----~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
..+.. . -..+++.+++|+|.|.||++.-.
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 00000 0 01457889999999999998743
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=4.2e-16 Score=143.22 Aligned_cols=194 Identities=18% Similarity=0.308 Sum_probs=152.0
Q ss_pred ccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCC------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669 265 SKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (504)
Q Consensus 265 ~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (504)
..+|..+.|.++.. .++||+.|..|++|-+.... .......+..|...|+++.|+|+|+.+++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35788999988665 89999999999999876532 233455677899999999999999999999999999999
Q ss_pred ECC--------C-----Ce-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE
Q 010669 338 DLS--------S-----GI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT 403 (504)
Q Consensus 338 d~~--------~-----~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~ 403 (504)
-.. + .+ .+.... ..+|...+..++|+|+++++++|+.|..+++||+..|+....+..|...+.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~---lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKV---LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEE---ecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 765 2 11 111111 236788999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee---------------------cCCCCCCeeEEEECCCCCEEEEEe
Q 010669 404 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE---------------------SSDSETPTNSVDFDHSGSYLAVAS 461 (504)
Q Consensus 404 ~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~---------------------~~~~~~~v~~i~~~~~g~~l~~~~ 461 (504)
.++|.|-++++++-+.|. .+.+++...+.+.... ..........++|+|+|..|++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999999999999988886 6666654332221111 000123456789999999998764
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.5e-16 Score=154.90 Aligned_cols=214 Identities=16% Similarity=0.139 Sum_probs=150.6
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEE-
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW- 292 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iw- 292 (504)
..|...+.+..|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.+.||
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3466789999999999999887643 4699999988753 3444444 34689999999887764 68877666
Q ss_pred -eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCC
Q 010669 293 -QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDG 369 (504)
Q Consensus 293 -d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg 369 (504)
|+.++ ....+..+...+....|+|+|+.|+.++ .+|...+|++.... ....+. +.. .+..|+|||
T Consensus 277 ~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~------~~~--~~~~~SpDG 344 (429)
T PRK01742 277 MGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG------GRG--YSAQISADG 344 (429)
T ss_pred EECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec------CCC--CCccCCCCC
Confidence 44442 2344556777788999999999777655 57888888765322 122221 111 357899999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEc--CCCcceeeeecCCCCCCee
Q 010669 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL--RKLKNFRSFESSDSETPTN 446 (504)
Q Consensus 370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~--~~~~~~~~~~~~~~~~~v~ 446 (504)
+.|++.+.++ +.+||+.+++.......+ ....+.|+|||.+|+.++.++ +.+|++ .+++..+.+..+ .+.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~ 419 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVK 419 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCC
Confidence 9998887765 556999888654322222 335678999999999998876 777765 356677777654 46688
Q ss_pred EEEECCC
Q 010669 447 SVDFDHS 453 (504)
Q Consensus 447 ~i~~~~~ 453 (504)
..+|+|-
T Consensus 420 ~p~wsp~ 426 (429)
T PRK01742 420 FPAWSPY 426 (429)
T ss_pred CcccCCC
Confidence 8999884
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.9e-15 Score=151.35 Aligned_cols=252 Identities=18% Similarity=0.167 Sum_probs=172.3
Q ss_pred CCcEEEEcCCCC-ceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC--ccee-EEeccCCcCeEEEEE
Q 010669 244 DTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN--YDCK-HTLKDHTAEVQAVTV 318 (504)
Q Consensus 244 dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~-~~~~~h~~~v~~l~~ 318 (504)
++.+.||++.+. ..-..+. ....|+++.|+| +..+++.|..+|+|.+||+...+. ...+ .....|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 347999999876 3333333 567899999999 677889999999999999987643 1111 122368899999999
Q ss_pred ccCC--CEEEEEeCCCeEEEEECCCCeEEEEeecC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q 010669 319 HATN--KYFVTASLDNTWCFYDLSSGICLTQVSDA-------GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS 388 (504)
Q Consensus 319 ~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~ 388 (504)
..+. .-|++++.||.|..|+++.-......... ........+++++|.+ +-..|++|+.+|.|.--+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7643 45999999999999988754432111100 0112335689999999 778899999999988744322
Q ss_pred Cc--------eeeeeeCCCCCeEEEEEcCCCc-EEEEEeCCcEEEEEcC-CCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669 389 QA--------NVAKFDGHVGAVTAISFSENGY-YLATAAHDGVKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 389 ~~--------~~~~~~~~~~~i~~l~~s~~g~-~l~s~~~d~v~vwd~~-~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~ 458 (504)
.+ ....+..|.++|+.+.++|=+. .+.++++.+|+||... ...++..+... ...+++++|||...-++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc--cceeeeeEEcCcCceEE
Confidence 21 2334556889999999999654 4445554459999987 55566555544 45699999999886555
Q ss_pred EEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 459 VASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 459 ~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
+... + +.+||+.. ..-..+.+..-+ ....+.+.+++.|++
T Consensus 458 ~~~d~~G~l~iWDLl~--~~~~Pv~s~~~~--~~~l~~~~~s~~g~~ 500 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQ--DDEEPVLSQKVC--SPALTRVRWSPNGKL 500 (555)
T ss_pred EEEcCCCceehhhhhc--cccCCccccccc--ccccceeecCCCCcE
Confidence 5444 4 99999955 334445554443 445555666665654
No 202
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.70 E-value=8.9e-16 Score=138.20 Aligned_cols=249 Identities=22% Similarity=0.396 Sum_probs=177.2
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-----eEEEcccCc------------cceeEEEEeeCCC--EEEEE
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLTG 283 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~s~~~~--~l~s~ 283 (504)
.+-|.++.|...|++|++|..+|.|.+|...... ....++.|. ..|+.+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999654322 334444454 4688999998665 57777
Q ss_pred eCCCcEEEEeCCCCCCc--------------------------------ceeEEe-ccCCcCeEEEEEccCCCEEEEEeC
Q 010669 284 SADKTVRVWQGSEDGNY--------------------------------DCKHTL-KDHTAEVQAVTVHATNKYFVTASL 330 (504)
Q Consensus 284 s~dg~i~iwd~~~~~~~--------------------------------~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~ 330 (504)
+.|.+|++|.+...+.. .+.+.+ ..|.--|++|.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 89999999986542210 111112 2577789999999998888876 5
Q ss_pred CCeEEEEECCCCeEEEEeecC---CCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCce------eee------
Q 010669 331 DNTWCFYDLSSGICLTQVSDA---GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN------VAK------ 394 (504)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~------~~~------ 394 (504)
|=.|.+|+++-......+... ....-...|++..||| ..+.|+-.++.|+|++.|+|.... +..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 678999998754333333221 1111224588999999 567888889999999999985321 111
Q ss_pred ----eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEc-CCCcceeeeecCCC----------C---CCeeEEEECCCCCE
Q 010669 395 ----FDGHVGAVTAISFSENGYYLATAAHDGVKLWDL-RKLKNFRSFESSDS----------E---TPTNSVDFDHSGSY 456 (504)
Q Consensus 395 ----~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~-~~~~~~~~~~~~~~----------~---~~v~~i~~~~~g~~ 456 (504)
|..--..|..+.|+++|+|+++-..-.|++||+ ...+++.++..|.. . ..-..++|+.++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 111224689999999999999877777999999 45667777766532 1 12346889999999
Q ss_pred EEEEeCc--EEEEEeecc
Q 010669 457 LAVASAD--IRVYQVASV 472 (504)
Q Consensus 457 l~~~~~d--i~vw~~~~~ 472 (504)
+++|+.. .++|+...+
T Consensus 344 v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EecccccceEEEecCCCC
Confidence 9999988 999996443
No 203
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.5e-16 Score=138.65 Aligned_cols=186 Identities=18% Similarity=0.306 Sum_probs=145.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCC
Q 010669 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 355 (504)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 355 (504)
..++++...|.|++||..++ +.+..++++...++.+.|.. ....+.+|+.||+|++||++.......+...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-- 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-- 115 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence 46888889999999999886 66778888888899999976 467899999999999999998877666653222
Q ss_pred CCCCeEEEEECCCCCEEEEEe----CCCcEEEEEcCCCce-eeee-eCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEc
Q 010669 356 RPEGYTSAAFHPDGLILGTGT----SEALVKIWDVKSQAN-VAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDL 427 (504)
Q Consensus 356 ~~~~v~~~~~~pdg~~l~~g~----~dg~I~iwd~~~~~~-~~~~-~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~ 427 (504)
...+..|++....++++++|+ .+-.|.+||+|..+. +..+ ..|...|+++.|+| +..+|++|+.|| |.+||+
T Consensus 116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 125778888888899999986 367899999998766 5544 56999999999999 568999999999 999999
Q ss_pred CCCcc----eeeeecCCCCCCeeEEEECCCC-CEEEEEeC-c-EEEEEeec
Q 010669 428 RKLKN----FRSFESSDSETPTNSVDFDHSG-SYLAVASA-D-IRVYQVAS 471 (504)
Q Consensus 428 ~~~~~----~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~-d-i~vw~~~~ 471 (504)
..... +..+. +...|..+.|..++ +.+.+-+. . ..+|++..
T Consensus 196 ~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 196 KKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred CCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 86532 22222 25679999999887 23444433 3 99999854
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2e-14 Score=128.56 Aligned_cols=235 Identities=17% Similarity=0.311 Sum_probs=168.8
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccc--eeEEEEeeCCCEEE-EEeCC------CcEEEEeC
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFL-TGSAD------KTVRVWQG 294 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~-s~s~d------g~i~iwd~ 294 (504)
....+++|+.|...+++|..+| .+||+.+--+....-..+.+. +..+-| ..++|+ +||.+ +.|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 3456699999999999998777 899987653332222222222 223333 334433 44433 47999993
Q ss_pred CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
... .++..+. ...+|.++.+.+ +.|++. ..+.|++|... +.+.+..+... ..+.+..+++-+.+..+||
T Consensus 83 ~k~---~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~---~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 83 LKE---RCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETR---SNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ccC---cEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecc---cCCCceEeecCCCCceEEE
Confidence 332 5666653 568899999975 445544 35789999987 44555555422 2234455555555556666
Q ss_pred E-EeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669 374 T-GTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSV 448 (504)
Q Consensus 374 ~-g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i 448 (504)
. |..-|.|+|-|+...+. ...+..|.+.|.|++.+-+|..+|+++..| |+|||..++..+..+........|.++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 5 44569999999977654 467788999999999999999999999998 999999999999988766556789999
Q ss_pred EECCCCCEEEEEeCc--EEEEEeec
Q 010669 449 DFDHSGSYLAVASAD--IRVYQVAS 471 (504)
Q Consensus 449 ~~~~~g~~l~~~~~d--i~vw~~~~ 471 (504)
+|+|++.+|+++|+. ++||.+..
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999987 99998844
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4e-16 Score=146.46 Aligned_cols=269 Identities=20% Similarity=0.296 Sum_probs=199.3
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc-ccCccceeEEEEee--CCCEEEEEeCCCcEEEEeCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~ 295 (504)
...|.+-|..|.|+..|..|++|+.|..|.+||+..+.....+ .+|...|....|.| +..-+++++.||.|++=.+.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 5678899999999999999999999999999999988776666 48999999999988 34569999999999998877
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC---CCeEEEEECC-CCC
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP---EGYTSAAFHP-DGL 370 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~~p-dg~ 370 (504)
..+.......+..|.++|.-++.-|+. .-|.+++.|+.+.-+|++.+.....+... ..+. -....++.+| +..
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceeeeeEecCCCCcc
Confidence 655444456677899999999999865 47899999999999999987655444321 1222 2678899999 455
Q ss_pred EEEEEeCCCcEEEEEcCCCc------eeeeeeCC------CCCeEEEEEcCCCcEEEEEeCC-cEEEEEcCC--C-----
Q 010669 371 ILGTGTSEALVKIWDVKSQA------NVAKFDGH------VGAVTAISFSENGYYLATAAHD-GVKLWDLRK--L----- 430 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~------~~~~~~~~------~~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~--~----- 430 (504)
.+++|+.|..+++||.+.-. .+..|..| .-.|++++|+.++.-|.++-.| .|++|.-.. +
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 89999999999999987532 23333322 3479999999776555555555 499995332 2
Q ss_pred -----ccee-eeecCCCCCCeeEEEE-CCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEE
Q 010669 431 -----KNFR-SFESSDSETPTNSVDF-DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLF 495 (504)
Q Consensus 431 -----~~~~-~~~~~~~~~~v~~i~~-~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~ 495 (504)
..++ .+++|.....|..+-| -|...|+++|+.- |.||+- ++.+.|.-+.+- ...|.||.
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K----~t~eii~~MegD--r~VVNCLE 443 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK----KTGEIIRFMEGD--RHVVNCLE 443 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec----chhHHHHHhhcc--cceEeccC
Confidence 1122 3677766667888866 5677888888765 888985 556666555553 23555544
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=2e-14 Score=128.80 Aligned_cols=256 Identities=16% Similarity=0.218 Sum_probs=177.5
Q ss_pred CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCCcce
Q 010669 225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
.|.-+.|..|..++ .....++.|.+|++...+-...+.....++.+++|||||+. |.+...|-.|.||.+.+. .
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~ 125 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----K 125 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----e
Confidence 46678888887754 45577889999999988888888888889999999999964 556678889999999874 2
Q ss_pred eEEeccCCcCeEEEEEccCCCEEEEEeCC------------------------------------CeEEEEECCCCeEEE
Q 010669 303 KHTLKDHTAEVQAVTVHATNKYFVTASLD------------------------------------NTWCFYDLSSGICLT 346 (504)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------------------------------------g~i~iwd~~~~~~~~ 346 (504)
..-+.-....+..++|+|+|++.+.+++- ..+.+||---...+.
T Consensus 126 ~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 126 GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 22333334557899999999988777531 234444432222222
Q ss_pred EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee--------------------------------
Q 010669 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK-------------------------------- 394 (504)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~-------------------------------- 394 (504)
.+. ..-++..++|+|.+++|++|+.|+.+||.+--+.++...
T Consensus 206 aYe------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 206 AYE------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred eee------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 221 124688999999999999999999998865322111100
Q ss_pred ----------------------------ee------CCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeee
Q 010669 395 ----------------------------FD------GHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFE 437 (504)
Q Consensus 395 ----------------------------~~------~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~ 437 (504)
++ .....+.-++|++|..++++-.+. + +-+||+++.+....+.
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi 359 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI 359 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh
Confidence 00 011246678999999999998876 4 9999999877655544
Q ss_pred cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
. ..+|....|+|....|+.+... +.+|.. .|......++. .-.|..+.+..+|
T Consensus 360 Q---k~piraf~WdP~~prL~vctg~srLY~W~p-----sg~~~V~vP~~--GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 360 Q---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP-----SGPRVVGVPKK--GFNIQKLQWLQPG 414 (447)
T ss_pred h---ccceeEEEeCCCCceEEEEcCCceEEEEcC-----CCceEEecCCC--CceeeeEEecCCC
Confidence 3 4689999999999888877666 666653 44443333332 3456666666555
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.2e-14 Score=141.94 Aligned_cols=231 Identities=11% Similarity=0.098 Sum_probs=155.4
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe---CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS---ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (504)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+ .+..|.+|++.++. ...+..+ .+.+....|+||
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~---~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASF---PRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCC---CCCcCCeEECCC
Confidence 4688999875443 33444667899999999999887654 34578999987642 2222223 333556899999
Q ss_pred CCEEEEE-eCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-Cc--EEEEEcCCCceeeee
Q 010669 322 NKYFVTA-SLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-AL--VKIWDVKSQANVAKF 395 (504)
Q Consensus 322 ~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-g~--I~iwd~~~~~~~~~~ 395 (504)
|+.|+.. +.+| .|++||+.++....... +...+....|+|||+.|+..+.+ |. |.++|+.++.. ..+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l 326 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRI 326 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccC------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEe
Confidence 9988765 4455 58899999886543322 22356789999999988776654 44 45556665543 333
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEE
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRV 466 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~v 466 (504)
..+........|+|||++|+..+.+ . |.+||+.++.. ..+... .......|+|||++|+.++.+ +.+
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3344456678999999998876543 2 88999987754 333321 223467899999999998876 344
Q ss_pred EEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 467 YQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 467 w~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
+++ ++.....+.+| .+.+...+|+|
T Consensus 403 ~~~-----~G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 403 VST-----DGRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEC-----CCCCeEECccC--CCCcCCcccCC
Confidence 443 45666777777 66777777765
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-14 Score=133.46 Aligned_cols=261 Identities=18% Similarity=0.216 Sum_probs=188.4
Q ss_pred CCeEEEEeccCCC--EEEEEeCCCcEEEEcCCCCceEEE------cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 224 PGIVSLDIHYSKD--VIATGGVDTNAVLFDRPSGQIVTT------LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 224 ~~I~~~~~s~~~~--~l~sg~~dg~i~vwd~~~~~~~~~------~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
..|.+++|.-+++ .+...+.+..+..+......+... .....++|..++.. ...|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 3567777776554 555555666777777666554433 23455667777653 3468888999999999987
Q ss_pred CCCC-cceeEEeccCCcCeEEEEEccCCC-EEEEEeCC--CeEEEEECCCCeEEEEeecCCCC----CCCCCeEEEEECC
Q 010669 296 EDGN-YDCKHTLKDHTAEVQAVTVHATNK-YFVTASLD--NTWCFYDLSSGICLTQVSDAGTD----GRPEGYTSAAFHP 367 (504)
Q Consensus 296 ~~~~-~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p 367 (504)
.+.. ......+..+ ..+..+.-++... ++++|+.. ..+.+||++..+.+..-.....+ .-+-.++.+.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 5321 1223333333 4566777776555 45558888 78999999998665544322110 1123567889998
Q ss_pred C--CCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee-eecCCCC
Q 010669 368 D--GLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS-FESSDSE 442 (504)
Q Consensus 368 d--g~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~-~~~~~~~ 442 (504)
. ...|++++.-+.+++||.+.+ +++..|.-...+++++...|.|+++++|...+ +..||+++++.... +... .
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--t 290 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--T 290 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc--c
Confidence 7 889999999999999999876 57888887788999999999999999999988 99999999887766 5443 6
Q ss_pred CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669 443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 443 ~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~ 496 (504)
+.++++..+|.+++++++|-| +||||+ ++.+.+....- ...++++-+
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~----ktrkll~kvYv---Ks~lt~il~ 339 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDI----KTRKLLHKVYV---KSRLTFILL 339 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeec----ccchhhhhhhh---hccccEEEe
Confidence 889999999999999999999 999998 55555544433 344555554
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-14 Score=149.46 Aligned_cols=247 Identities=16% Similarity=0.183 Sum_probs=174.3
Q ss_pred cCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669 220 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i 291 (504)
..|++.|..++.++.. .++++||.||+|++|+...- +...++..-...+.++.+.+.++.++.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 3467778888877654 89999999999999997531 223344445677899999999999999999999999
Q ss_pred EeCCCC--CCc--ceeEEeccC-CcCeEEE-EEcc-CCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669 292 WQGSED--GNY--DCKHTLKDH-TAEVQAV-TVHA-TNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (504)
Q Consensus 292 wd~~~~--~~~--~~~~~~~~h-~~~v~~l-~~~p-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (504)
.+++.. ... .+......+ .+.+.++ +|.. .+. .++.+..-+.|..||++.......++. ....+.|+++
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QLRHGLVTSI 1201 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---CccccceeEE
Confidence 998762 111 111222222 2333333 3322 233 788888899999999998766655542 2344689999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcCC---CcEEEEEeC--Cc-EEEEEcCCCcceeee
Q 010669 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSEN---GYYLATAAH--DG-VKLWDLRKLKNFRSF 436 (504)
Q Consensus 364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~---g~~l~s~~~--d~-v~vwd~~~~~~~~~~ 436 (504)
+.+|.+++++.|+..|.+.+||+|=+.++..+. ++..+|+.+..+|- ....++++. .+ |.+|++.++.+...+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 999999999999999999999999888887775 35578888888762 355666555 35 999999988765555
Q ss_pred ecCC-----------------CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 437 ESSD-----------------SETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 437 ~~~~-----------------~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
-... .........+..-+.++.+|+.| |+.||.
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 4320 01112234444556788888888 999997
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=144.41 Aligned_cols=212 Identities=21% Similarity=0.367 Sum_probs=151.4
Q ss_pred EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe-ccCCcCeEEEEEcc--CCCEEEEEeCCCeE
Q 010669 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHA--TNKYFVTASLDNTW 334 (504)
Q Consensus 258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p--~~~~l~s~s~dg~i 334 (504)
...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-.- +.++.+ .+|...|.++.|-| ++..+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3568899999999999999999999999999999998754 444444 48999999999998 45689999999999
Q ss_pred EEEECCCCeEEEEe-----ecCCCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCce----------eeeeeCC
Q 010669 335 CFYDLSSGICLTQV-----SDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQAN----------VAKFDGH 398 (504)
Q Consensus 335 ~iwd~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~----------~~~~~~~ 398 (504)
++||+...+.-..- ...--..|...|..++..|++ +.|.++++||+|+-||+|.... +..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999852211000 000012456678889999988 8999999999999999987421 1111222
Q ss_pred CCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCc------------------ceeeeecCCC-------C---CCeeEE
Q 010669 399 VGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK------------------NFRSFESSDS-------E---TPTNSV 448 (504)
Q Consensus 399 ~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~------------------~~~~~~~~~~-------~---~~v~~i 448 (504)
.-...|+.++|. .++|++|+.|- .++||.|... ++..+..... . ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 235778999994 67899999988 9999954211 1222211100 0 125678
Q ss_pred EECCCCCEEEE-EeCc-EEEEEeecc
Q 010669 449 DFDHSGSYLAV-ASAD-IRVYQVASV 472 (504)
Q Consensus 449 ~~~~~g~~l~~-~~~d-i~vw~~~~~ 472 (504)
.|+|+|.-|++ -+.+ |.+|+++..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCC
Confidence 89999965554 4555 999999543
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=143.45 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=131.1
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCCceEEEcc----cCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCC----------
Q 010669 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSED---------- 297 (504)
Q Consensus 233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~---------- 297 (504)
+.+--++.|-..|.|.+.|....+..+.+. -....|+|+.|-| +...++.+-.+|.+.+||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 445567778888999998876532222121 1346799999999 4456777888999999974321
Q ss_pred ----CCc-----------ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669 298 ----GNY-----------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 298 ----~~~-----------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (504)
..+ .++..+.--.+.|..++|+|||++|++.+.||.++|||..+.+.+..++ ..-....|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-----SYFGGLLC 337 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-----SYFGGLLC 337 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-----hhccceEE
Confidence 000 0111111223578899999999999999999999999999877665554 33467999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669 363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (504)
++|+|||++|++|++|..|.||.+...+.+..-.+|.+.|+.|+|.
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999999999999999999999999998
No 212
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.65 E-value=7.8e-17 Score=117.44 Aligned_cols=52 Identities=37% Similarity=0.677 Sum_probs=43.7
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI 53 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 53 (504)
|.|+|||++|.+||++| +|++|||..|++||++ +++||+|+++|+.++|+|-
T Consensus 5 f~CpIt~~lM~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 5 FLCPITGELMRDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GB-TTTSSB-SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cCCcCcCcHhhCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 57999999999999997 8999999999999999 6789999999999999886
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.7e-14 Score=135.86 Aligned_cols=259 Identities=15% Similarity=0.216 Sum_probs=184.7
Q ss_pred CCCCeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCc--cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 222 SKPGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
+...-+.|..+|||+|+ ++|.....|++||+.+-.+ .|..|. ..|.-.-.+.|-..++.-..|.+|-+...-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-- 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-- 125 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence 34556789999999964 6777889999999976543 333333 3344444454555566667777776653221
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
....+. -...-.++++|.-.--|++++....|+-++++.|..+..+.. ....++++..++-..+|++|+.+
T Consensus 126 ---~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 126 ---RHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred ---eeeeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-----ccccceeeeecCccceEEecccC
Confidence 111111 112335667765444455556667799999999988877752 23679999999999999999999
Q ss_pred CcEEEEEcCCCceeeeee------CCCC-----CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee
Q 010669 379 ALVKIWDVKSQANVAKFD------GHVG-----AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 446 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~------~~~~-----~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~ 446 (504)
|.|.+||.|....+..+. .|.+ .|+++.|+.+|-.+++|+..| |.|||+|..+++..- .|....+|.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~ 275 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIK 275 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCcccee
Confidence 999999999877665553 2333 499999999999999999999 999999998876543 444567899
Q ss_pred EEEECCC--CCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 447 SVDFDHS--GSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 447 ~i~~~~~--g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
.+.|.+. ++.|++.... ++||+- .+++....+.. ...+..++++|++-
T Consensus 276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~----~~Gk~~asiEp---t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSMDKRILKIWDE----CTGKPMASIEP---TSDLNDFCFVPGSG 326 (703)
T ss_pred eecccccCCCceEEecchHHhhhccc----ccCCceeeccc---cCCcCceeeecCCc
Confidence 9999776 4566666665 999996 66777777655 45688888888763
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.4e-14 Score=137.63 Aligned_cols=222 Identities=15% Similarity=0.223 Sum_probs=151.5
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCce----EEEcccCccceeEEEEe-----eCCCEEEEEeCCCcEEEEeCCC
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI----VTTLSGHSKKVTSVKFV-----TEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s-----~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
+....++-.|++|+-.- ...+++|+...+.. +....-.....+|-.|. +.+--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44455555667666543 23588888764321 11111111223444442 3455688888889999998765
Q ss_pred CCCcceeEEe--ccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCC--------------CeEEEEeecCCC------
Q 010669 297 DGNYDCKHTL--KDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS--------------GICLTQVSDAGT------ 353 (504)
Q Consensus 297 ~~~~~~~~~~--~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~~~~------ 353 (504)
. ....+... .-....|+++.|-|.+ ..|+.+-.+|.+++||..- +...........
T Consensus 205 ~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 205 F-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred h-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 2 11111111 1134689999999854 4677777899999997631 111111110000
Q ss_pred ---CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669 354 ---DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (504)
Q Consensus 354 ---~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~ 429 (504)
......|..++|+|||++||+.+.||.+||||..+.+.+..++..-+...|++|||||+||++|++|. |.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 01134688999999999999999999999999999888888877778999999999999999999999 99999999
Q ss_pred CcceeeeecCCCCCCeeEEEEC
Q 010669 430 LKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
.+.+..-.+| ..+|..++|+
T Consensus 364 rRVVARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 364 RRVVARGQGH--KSWVSVVAFD 383 (636)
T ss_pred ceEEEecccc--ccceeeEeec
Confidence 8888766655 7899999998
No 215
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=1.8e-14 Score=139.28 Aligned_cols=207 Identities=19% Similarity=0.308 Sum_probs=160.8
Q ss_pred eEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcc---eeEEeccCCcCeEEEEEccCCCEEEEEeCCC
Q 010669 257 IVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYD---CKHTLKDHTAEVQAVTVHATNKYFVTASLDN 332 (504)
Q Consensus 257 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 332 (504)
.+..+.+|...|+.+.|+| +..+|++|+.|..|+||.+..+.... ....+.+..-.|.++.|||...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4566789999999999999 55689999999999999988532211 1122333445789999999887777777889
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCC-CeEEEEEcCC
Q 010669 333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVG-AVTAISFSEN 410 (504)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~-~i~~l~~s~~ 410 (504)
++++||+.+++....+. +|...|.++.|+.||.++++++.|..|+|||.|. ++++....+|.+ .=..+.|.-+
T Consensus 151 ~v~i~D~stqk~~~el~-----~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn 225 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELS-----GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGN 225 (1012)
T ss_pred eEEEEEcccCceeeccc-----CCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccc
Confidence 99999999998887765 7888999999999999999999999999999986 577888888865 3345788766
Q ss_pred CcEEEEEeCC----c-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669 411 GYYLATAAHD----G-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (504)
Q Consensus 411 g~~l~s~~~d----~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~ 469 (504)
-..|++.+-+ . |++||.++.. .++++.... ...|.---|+||.++|+-+|.. +..+.+
T Consensus 226 ~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~-stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 226 WERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDS-STGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhhhhhcccchhhheeeeeeeccccCCcceeEEeec-ccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 5577776655 2 9999999754 455555432 4567777899999988877765 555555
No 216
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=2.1e-12 Score=126.02 Aligned_cols=263 Identities=13% Similarity=0.202 Sum_probs=172.3
Q ss_pred CeEEEEeccCCCEEEEEeC----CCcEEEEcCCCC--c--eEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCC
Q 010669 225 GIVSLDIHYSKDVIATGGV----DTNAVLFDRPSG--Q--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGS 295 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~--~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~ 295 (504)
....++++|++++|.+... +|.|..|++... + .+............++++|++++|+++. .+|+|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3456888999999888866 578999987653 2 3333333344567799999999988887 48999999998
Q ss_pred CCCCcceeEEec-----------cCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCe--EEE--EeecCCCCCCCCC
Q 010669 296 EDGNYDCKHTLK-----------DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGI--CLT--QVSDAGTDGRPEG 359 (504)
Q Consensus 296 ~~~~~~~~~~~~-----------~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~ 359 (504)
..+......... .......++.|+|+++++++... ...|.+|++.... ... .+.. .....
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~----~~G~G 193 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV----PPGSG 193 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC----STTSS
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc----ccCCC
Confidence 754332221111 12245789999999998888754 3479999997655 222 2221 22356
Q ss_pred eEEEEECCCCCEEEEEe-CCCcEEEEEcC--CCc--eeeeeeC----C--CCCeEEEEEcCCCcEEEEEeCCc--EEEEE
Q 010669 360 YTSAAFHPDGLILGTGT-SEALVKIWDVK--SQA--NVAKFDG----H--VGAVTAISFSENGYYLATAAHDG--VKLWD 426 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~-~dg~I~iwd~~--~~~--~~~~~~~----~--~~~i~~l~~s~~g~~l~s~~~d~--v~vwd 426 (504)
...+.|+|+|+++++.+ .++.|.+|++. .+. .+..+.. . ......|.++|||++|+++..+. |.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 88999999999876655 57889999987 332 2222221 1 12578899999999999887663 99999
Q ss_pred cCC--Cc--ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669 427 LRK--LK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 427 ~~~--~~--~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~ 496 (504)
+.. ++ .+..+... ....+.+.++|+|++|++++.+ |.+|+++..+........... .....||.|
T Consensus 274 ~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~---~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP---IPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE---SSSEEEEEE
T ss_pred EecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc---CCCCEEEeC
Confidence 942 32 23333332 3458999999999999999865 999998654444444443211 335566654
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=5.4e-14 Score=145.49 Aligned_cols=220 Identities=22% Similarity=0.289 Sum_probs=164.2
Q ss_pred EcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCC----CCcceeEEeccCCcCeEEEEEccCCCE
Q 010669 250 FDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSED----GNYDCKHTLKDHTAEVQAVTVHATNKY 324 (504)
Q Consensus 250 wd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~ 324 (504)
|+.+ |..+..+..|...|..++.++. +.++++||.||+|++|+...- +..+...++..-...+.++.+.+.++.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6654 7889999999999999998874 489999999999999997642 233444555545678999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeEEE----EeecCCCCCCCCCeEEEEECC-CCC-EEEEEeCCCcEEEEEcCCCceeeeee--
Q 010669 325 FVTASLDNTWCFYDLSSGICLT----QVSDAGTDGRPEGYTSAAFHP-DGL-ILGTGTSEALVKIWDVKSQANVAKFD-- 396 (504)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~p-dg~-~l~~g~~dg~I~iwd~~~~~~~~~~~-- 396 (504)
+++++.||.|.+.+++..+... .............+..-+|.. ++. .++.+...+.|..||+++.....+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987621111 111111112222344444444 334 78888899999999999876655543
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC---CEEEEEeC---c-EEEEE
Q 010669 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG---SYLAVASA---D-IRVYQ 468 (504)
Q Consensus 397 ~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g---~~l~~~~~---d-i~vw~ 468 (504)
...|.|++++.+|.+.+++.|+..| +.+||+|-+.++..+..+. ..++..+..+|-. .+.++++. + +.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 3457999999999999999999999 9999999988888887665 4788888877643 46666554 2 99999
Q ss_pred eec
Q 010669 469 VAS 471 (504)
Q Consensus 469 ~~~ 471 (504)
+..
T Consensus 1272 ~~~ 1274 (1431)
T KOG1240|consen 1272 MET 1274 (1431)
T ss_pred ccc
Confidence 944
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.7e-13 Score=137.60 Aligned_cols=215 Identities=11% Similarity=0.065 Sum_probs=145.5
Q ss_pred CCCCeEEEEeccCCCEEEEEe---CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-eCCC--cEEEEeCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADK--TVRVWQGS 295 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg--~i~iwd~~ 295 (504)
+...+.+.+|+|||+.|+..+ .+..+++|++.+++... +....+.+....|+|||+.|+.. +.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 456789999999999887654 34579999998875432 22233335578999999987754 4455 48889987
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
++ . ...+..+...+....|+|+|+.|+.++.+ + .|.++|+.++... .+.. .........|+|||+++
T Consensus 276 tg---~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-----~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 276 SG---Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-----EGSQNQDADVSSDGKFM 345 (429)
T ss_pred CC---C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----CCCCccCEEECCCCCEE
Confidence 64 2 23344444567889999999988777654 4 4555577766543 2221 11235678999999998
Q ss_pred EEEeCC---CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCe
Q 010669 373 GTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 373 ~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v 445 (504)
+..+.+ ..|.+||+.++... .+... .......|+|||.+|+.++.++ +.++++. +.....+..+ ...+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~ 420 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQV 420 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCc
Confidence 876543 35888999877643 33221 2234678999999999888763 6777874 5555556543 4567
Q ss_pred eEEEECC
Q 010669 446 NSVDFDH 452 (504)
Q Consensus 446 ~~i~~~~ 452 (504)
...+|+|
T Consensus 421 ~~p~Wsp 427 (429)
T PRK03629 421 KFPAWSP 427 (429)
T ss_pred CCcccCC
Confidence 8888887
No 219
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.5e-13 Score=136.60 Aligned_cols=263 Identities=15% Similarity=0.202 Sum_probs=192.1
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE----EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC-CCCcc
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYD 301 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~ 301 (504)
.++.+++.|.+....-. ..+.+|+...+.... .-..|.-.+++.++||+++++++|..||.|.+|.--. .+.-.
T Consensus 164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 46777888887666654 468888877654211 1124777799999999999999999999999996433 12223
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
....+.-|...|.++.|+++|.+|++|+..|.+.+|.+.+++. .-+. .-.++|..+.++||+.+.+....|+.|
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP-----RLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP-----RLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc-----ccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 3455667889999999999999999999999999999999872 2222 234689999999999999999999999
Q ss_pred EEEEcCCCceeeeeeC-----------CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC---C-----
Q 010669 382 KIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD---S----- 441 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~---~----- 441 (504)
.+....+.....++.+ ..+-.+.++++|.-..++-.+..+ |.+||+.+...+..+.... +
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 9998765543333322 234567889999666677777777 9999998877666554321 1
Q ss_pred -CCCeeEEEECCCCCEEEEEeC--------c----EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669 442 -ETPTNSVDFDHSGSYLAVASA--------D----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 442 -~~~v~~i~~~~~g~~l~~~~~--------d----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
.-.++.++.+-.|+++++.-. | +++|.++...++|.+...+..- |...+....|+
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~ 464 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFL 464 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEe
Confidence 124677888888999998731 1 8999999988999987766532 23334443333
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=139.23 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=153.1
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (504)
..|.+||... .....+..+...+.+..|+|||+.|+.++.+ ..|.+||+.++. . ..+..+.+...+..|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~-~~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---R-ELVASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---E-EEeccCCCCccCceECCC
Confidence 4688999854 4445566677789999999999988877643 469999997642 1 223334445567899999
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CCc--EEEEEcCCCceeeee
Q 010669 322 NKYFV-TASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EAL--VKIWDVKSQANVAKF 395 (504)
Q Consensus 322 ~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~--I~iwd~~~~~~~~~~ 395 (504)
|+.++ +.+.+| .|++||+.++.... +. .+.......+|+|||+.|+.++. +|. |+++|+.+++.. .+
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~l 331 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RL 331 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee
Confidence 99775 445555 59999999886533 32 22234567899999998887664 444 666777666533 22
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEE
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~ 468 (504)
..+.......+|+|+|++|+..+.+ + |.+||+.+++.. .+.. ........|+|+|++++..+.+ ..||-
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 2233345578999999998876533 2 899999877643 3322 1234567899999998877664 44554
Q ss_pred eeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 469 VASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 469 ~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
++. .+.....+..+ .+.+...+++|
T Consensus 408 ~~~---~g~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 408 VST---DGRVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred EEC---CCCceEEcccC--CCCCCCCccCC
Confidence 422 33445555544 45566666554
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.5e-14 Score=128.15 Aligned_cols=247 Identities=14% Similarity=0.201 Sum_probs=178.7
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc--CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
-..|.+.|.|++|......+++|+.+|+|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||...
T Consensus 101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 345778999999999999999999999999999999888776652 235899999999999999999999999999987
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeec--CCCCCCCCCeEEEEECCCCCEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
..+.....-..........+.|+|.. .+|++.+..+.+.+||++.......... .++.........+.|+|+|+.|+
T Consensus 181 ~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 181 RQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred CCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 54322222233445567889999954 5788888999999999986543211110 01111122346789999999988
Q ss_pred EEeCCCcEEEEEcCCCce-eeeeeCCC-------CCeEEEEEcCCCcEEEEEeCC-cEEEEEcCCCc-------------
Q 010669 374 TGTSEALVKIWDVKSQAN-VAKFDGHV-------GAVTAISFSENGYYLATAAHD-GVKLWDLRKLK------------- 431 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~-~~~~~~~~-------~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~~~------------- 431 (504)
+--....-.+||+-+..+ +..+. |+ ..+.+++|..+ +.+++|+++ +|++|.+....
T Consensus 261 siRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred hhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchh
Confidence 876666677889877443 44443 22 25667888744 458888888 59999875311
Q ss_pred ----------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 432 ----------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 432 ----------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
.+..+.+| ..-++.+.|+|...+|++.|-. ++||.-
T Consensus 339 ~~~~~~~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hCchhheecceeEEEecc--cccccceeecCCcceEeccchhhheecccc
Confidence 11223333 5678899999998888887766 999964
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=126.51 Aligned_cols=230 Identities=15% Similarity=0.178 Sum_probs=166.4
Q ss_pred EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEE
Q 010669 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCF 336 (504)
Q Consensus 258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~i 336 (504)
...+.+|.+.|+++.|..++. |++|..-|.|++|++.+. .....+. .|...|+.+..-|+ ..+.+-+.|+.+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecC---ccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 445668999999999987665 899999999999999885 3444445 56678888888876 67888899999999
Q ss_pred EECCCCeEEEEe--------------ecCC----------------------------------CCCCCCCeEEEEECC-
Q 010669 337 YDLSSGICLTQV--------------SDAG----------------------------------TDGRPEGYTSAAFHP- 367 (504)
Q Consensus 337 wd~~~~~~~~~~--------------~~~~----------------------------------~~~~~~~v~~~~~~p- 367 (504)
|++.-+..+... .... ..+..+.+.|..+.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 998753222110 0000 001123345555333
Q ss_pred CC--CEEEEEeCCCcEEEEEcCCCceee----------eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cc
Q 010669 368 DG--LILGTGTSEALVKIWDVKSQANVA----------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KN 432 (504)
Q Consensus 368 dg--~~l~~g~~dg~I~iwd~~~~~~~~----------~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~ 432 (504)
++ -++++|.++|.+.+||+.++..+. ....|..+|.++.|.+.-..=++|+.+. +..|++... ..
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 23 356788999999999999874433 3345889999999987544445566554 888887643 22
Q ss_pred e--eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 433 F--RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 433 ~--~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
. ..+... +-.+..+.+-||++++|++|.| ||||.+ ++.+.+..+.-| .+.|.+++|+|+.
T Consensus 242 q~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVysw----rtl~pLAVLkyH--sagvn~vAfspd~ 305 (323)
T KOG0322|consen 242 QIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSW----RTLNPLAVLKYH--SAGVNAVAFSPDC 305 (323)
T ss_pred cccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEe----ccCCchhhhhhh--hcceeEEEeCCCC
Confidence 1 112221 4568889999999999999999 999999 889999999999 7899999999984
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.7e-13 Score=137.74 Aligned_cols=234 Identities=16% Similarity=0.125 Sum_probs=149.8
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (504)
..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++. . ..+....+.+....|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~-~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---R-RVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---E-EEeecCCCCccceEECCC
Confidence 467788874 44445555677889999999999988877643 359999998752 2 223333455678999999
Q ss_pred CCEEE-EEeCCCeEEEE--ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEc--CCCceeeee
Q 010669 322 NKYFV-TASLDNTWCFY--DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDV--KSQANVAKF 395 (504)
Q Consensus 322 ~~~l~-s~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~--~~~~~~~~~ 395 (504)
|+.|+ +.+.+|...+| |+.++. ...+. .+........|+|||+.|+..+. +|...||.+ ..+.. ..+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECC-----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE
Confidence 99876 46777776655 454443 33332 22234566789999998876554 466666655 34432 222
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEE
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~ 468 (504)
..+........|+|||++|+..+.+ + |.+||+.+++.. .+... .......|+|+|++|+.++.+ -.+|-
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC---CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 2222334567899999999876644 2 999999877643 23221 234678999999999988765 34454
Q ss_pred eeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 469 VASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 469 ~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
++. .+.....+..+ .+.+...+++|-
T Consensus 400 ~~~---~g~~~~~l~~~--~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS---DGRIKQRLSVQ--GGDVREPSWGPF 425 (427)
T ss_pred EEC---CCCceEEeecC--CCCCCCCccCCC
Confidence 422 34445555544 456666666653
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.3e-13 Score=134.73 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=142.0
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 321 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 321 (504)
..|.++|.. +.....+..|...+.+..|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+....|+|+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCC
Confidence 478889975 4445566678889999999999998887653 4689999997742 2334455667788999999
Q ss_pred CCEEE-EEeCCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeee
Q 010669 322 NKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKF 395 (504)
Q Consensus 322 ~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~ 395 (504)
|+.|+ +.+.++. |++||+.++.... +. .+........|+|||+.|+..+. +| .|++||+..+.. ..+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEE-cc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence 98775 5555554 7788998876533 32 22334567899999998887664 33 688888866544 333
Q ss_pred eCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669 396 DGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 396 ~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
..+.+.+....|+|+|.+|+..+.+ . |.+||+..+. ...+.. ...+..+.|+|||+.|+..+.
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEc
Confidence 3344556778999999999877543 2 8888975543 333322 224677899999999887654
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.7e-13 Score=137.75 Aligned_cols=219 Identities=15% Similarity=0.131 Sum_probs=146.8
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSE 296 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~ 296 (504)
.+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||.++.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 456778999999999988877643 459999998886543 333345567899999998776 567788877776543
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEE--CCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYD--LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
.+ .....+..+........|+|||+.|+..+. +|...+|. +.++....... . + ......+|+|||++++
T Consensus 272 ~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-~---g--~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 272 DG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-T---G--SYNTSPRISPDGKLLA 343 (427)
T ss_pred CC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec-C---C--CCcCceEECCCCCEEE
Confidence 22 223445555555677899999998876654 45556664 44544322221 1 1 2234578999999998
Q ss_pred EEeCCC---cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCee
Q 010669 374 TGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTN 446 (504)
Q Consensus 374 ~g~~dg---~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v~ 446 (504)
..+.++ .|.+||+.+++...... ........|+|||++|+.++.++ +.+.++ ++.....+..+ .+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CCCCC
Confidence 776554 69999998876443222 22346789999999988877552 666666 35555555433 45677
Q ss_pred EEEECCC
Q 010669 447 SVDFDHS 453 (504)
Q Consensus 447 ~i~~~~~ 453 (504)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 7788874
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=6.5e-15 Score=131.93 Aligned_cols=229 Identities=18% Similarity=0.248 Sum_probs=163.2
Q ss_pred EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcceeEEe
Q 010669 228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTL 306 (504)
Q Consensus 228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (504)
-++|||+|+++|+.+.- .+.|-|..+-+..+.+. .-..|.-+.|..|..+++ ....|+.|.+|++... .-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEe
Confidence 46799999999999865 77788877666544443 245688899998777644 5577889999999874 334455
Q ss_pred ccCCcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669 307 KDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (504)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd 385 (504)
.....++.+++|+|+|+.| .+...|-.|.+|.+.+.+...... ....+..++|+|||++.+..+.-.....++
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc------cccCceeEEECCCCceeeeeecccHHHHHH
Confidence 6667889999999999655 556668899999999876654332 123568899999999998887643322222
Q ss_pred c---CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669 386 V---KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 386 ~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
+ +....+..|+...-..+.+.|+|||..|++ ||---.-.+..+.. ...+..++|+|.+++|++|+.
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEE--------ecchhhheeeeeee---ccceeEEEeccccceEEeecc
Confidence 2 233455666666667899999999988765 44221111112222 357889999999999999999
Q ss_pred c--EEEEEeeccCccceeEEEc
Q 010669 463 D--IRVYQVASVKADWNCIKTF 482 (504)
Q Consensus 463 d--i~vw~~~~~~~~~~~i~~~ 482 (504)
| ++|-+- -+|+.+..|
T Consensus 231 D~~lrvlnh----~tWk~f~ef 248 (447)
T KOG4497|consen 231 DQMLRVLNH----FTWKPFGEF 248 (447)
T ss_pred chhhhhhce----eeeeehhhh
Confidence 9 887764 567766655
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1e-15 Score=142.86 Aligned_cols=224 Identities=16% Similarity=0.233 Sum_probs=175.4
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (504)
..+.|-.+..++|++ ....++|||- .|..+..++.|. .|..+.|.|.--+|++++..|.++.-|+.++ +.+..+
T Consensus 174 ~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G---klVa~~ 247 (545)
T KOG1272|consen 174 RDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG---KLVASI 247 (545)
T ss_pred hhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechh---hhhHHH
Confidence 333343444555655 4568999995 477788888664 5999999998888999999999999999987 666677
Q ss_pred ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 010669 307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV 386 (504)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~ 386 (504)
....+.+..++-+|-+..+-+|...|+|.+|.......+..+. .|.++|.+++++++|.++++.+.|..++|||+
T Consensus 248 ~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-----cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 248 RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-----CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-----hcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 7777889999999999999999999999999999888777665 67889999999999999999999999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEE-cCC--CcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD-LRK--LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd-~~~--~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
|+...+.++.. ..+...++||..| +|+.+-.+.|.+|. .-+ +..-..+-.|.....|..+.|.|-...|-+|...
T Consensus 323 R~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 323 RNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred ccccccceeec-CCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence 99887777664 4577889998655 45555555599994 333 2233334445556789999999987777766544
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=8.9e-16 Score=152.46 Aligned_cols=227 Identities=19% Similarity=0.334 Sum_probs=170.0
Q ss_pred ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335 (504)
Q Consensus 256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~ 335 (504)
+.++.+.+|..+|.|+.|...|.++++|+.|..++||.+++. .+...+.||.+.|+.++.+.++.+++++|.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 345566799999999999999999999999999999998876 88899999999999999998888999999999999
Q ss_pred EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--------------eeee------
Q 010669 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--------------VAKF------ 395 (504)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~--------------~~~~------ 395 (504)
+|-+..+..+..+. +|.+.|++++|+|-. +.+.||++++||.+-.-. +..+
T Consensus 258 vWrl~~~~pvsvLr-----ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLR-----GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEecCCCchHHHHh-----ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 99999999888876 888999999999953 678899999999871100 0000
Q ss_pred ---e-C------CCCCeEEEEEcCCCcEEEEEe-----------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669 396 ---D-G------HVGAVTAISFSENGYYLATAA-----------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453 (504)
Q Consensus 396 ---~-~------~~~~i~~l~~s~~g~~l~s~~-----------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~ 453 (504)
. + ....+-+++|..++..+++++ .+- +.+|++.++...+....+ ...+..+.++|-
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVLDVHPF 406 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeeeeecCC
Confidence 0 0 001223334444444444433 233 678888888877777666 567888999996
Q ss_pred CCEE-EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 454 GSYL-AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 454 g~~l-~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
...+ .+++.| ..|||+ -.+..++.+.. +.+.+..-.|+++|+.
T Consensus 407 n~ri~msag~dgst~iwdi----~eg~pik~y~~--gh~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDI----WEGIPIKHYFI--GHGKLVDGKFSQDGTS 452 (1113)
T ss_pred CcHhhhhccCCCceEeeec----ccCCcceeeec--ccceeeccccCCCCce
Confidence 6544 466777 999998 33444444432 1467777888888753
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.5e-13 Score=136.95 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=147.4
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCC--cEEEEeC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG 294 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg--~i~iwd~ 294 (504)
.+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +..+.+...+..|+|+|+.|+ +.+.+| .|.+||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 345678999999999988887643 469999998776533 333444556789999998765 555555 5889998
Q ss_pred CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
.++ ....+..+.......+|+|+|++|+.++. +|. |+++|+.+++...... . + ......+|+|||++
T Consensus 280 ~~g----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~---g--~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GSR----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q---G--NYNARASVSPDGKK 349 (433)
T ss_pred CCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C---C--CCccCEEECCCCCE
Confidence 774 23344555555678899999998887764 444 7777777765433221 1 1 23446899999999
Q ss_pred EEEEeCCC---cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCC
Q 010669 372 LGTGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 372 l~~g~~dg---~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
++..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ + |.++|+.. .....+..+ .+.
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~ 424 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGE 424 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccC--CCC
Confidence 98765443 6999999877654 332 22244567999999988777654 3 88888854 444444433 345
Q ss_pred eeEEEECC
Q 010669 445 TNSVDFDH 452 (504)
Q Consensus 445 v~~i~~~~ 452 (504)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 66777876
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=2.3e-13 Score=120.66 Aligned_cols=153 Identities=22% Similarity=0.415 Sum_probs=110.0
Q ss_pred EEEEEccCCCEEEEEeC----------CCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE--eCCCc
Q 010669 314 QAVTVHATNKYFVTASL----------DNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG--TSEAL 380 (504)
Q Consensus 314 ~~l~~~p~~~~l~s~s~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g--~~dg~ 380 (504)
..+.|+|+|++|+.-.. -|...+|.++.. .....+.. ....+|.+++|+|+|+.|++. ..++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l----~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL----KKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec----cCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 46788999987765433 123455555322 22333321 223469999999999987654 46779
Q ss_pred EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669 381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~ 456 (504)
|.+||++ ++.+..+. ...++.+.|+|+|++|++++.+ | |.+||.++.+.+..... ..+..++|+|+|++
T Consensus 85 v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----SDATDVEWSPDGRY 157 (194)
T ss_pred cEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----CcEEEEEEcCCCCE
Confidence 9999996 66676664 4678899999999999998744 5 99999998887766643 35789999999999
Q ss_pred EEEEeC------c--EEEEEeeccCccceeEEEc
Q 010669 457 LAVASA------D--IRVYQVASVKADWNCIKTF 482 (504)
Q Consensus 457 l~~~~~------d--i~vw~~~~~~~~~~~i~~~ 482 (504)
+++++. | ++||++ .++.+...
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~-----~G~~l~~~ 186 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSF-----QGRLLYKK 186 (194)
T ss_pred EEEEEeccceeccccEEEEEe-----cCeEeEec
Confidence 998864 3 899998 35555543
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.6e-12 Score=115.08 Aligned_cols=175 Identities=14% Similarity=0.279 Sum_probs=130.7
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec--cCCcCeEEEEEccCC
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATN 322 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~ 322 (504)
..|.|||-....++.++. ...+|.++.+.++ .+++.- .+.|.||...++- +.++.+. .....+.+++-+.+.
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh--hheeeeecccCCCceEeecCCCCc
Confidence 469999966677777776 5678999999654 455544 4689999987532 3333332 222335555444344
Q ss_pred CEEEE-EeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCceeeeeeC-
Q 010669 323 KYFVT-ASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL-VKIWDVKSQANVAKFDG- 397 (504)
Q Consensus 323 ~~l~s-~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~-I~iwd~~~~~~~~~~~~- 397 (504)
.+|+. |-.-|.|.|-|+...+. ...+. .|...|.|++++-+|.++|+++..|+ |||||..+|..+.+++.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-----AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIIN-----AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEE-----cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 45544 34468999999987655 23333 78899999999999999999999997 79999999999999863
Q ss_pred -CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669 398 -HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 430 (504)
Q Consensus 398 -~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~ 430 (504)
....|.+++||||+.+|+++++.| |.||.++..
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 345899999999999999999998 999998753
No 232
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.58 E-value=2e-15 Score=107.81 Aligned_cols=52 Identities=46% Similarity=0.793 Sum_probs=49.8
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (504)
++|+||++++++||++| +||+|||++|++|++++++||+|+++++.+||++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDPVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCCEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 57999999999999996 89999999999999999999999999999999987
No 233
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.1e-11 Score=111.81 Aligned_cols=271 Identities=13% Similarity=0.206 Sum_probs=182.9
Q ss_pred CCCCeEEEEeccCCCEEEEEeC---CCcEEEEcCCC--Cce--EEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEe
Q 010669 222 SKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPS--GQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQ 293 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~---dg~i~vwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd 293 (504)
+.+..+-++|+|+++.|.++-. +|.|..|.+.. |.+ +........+-..++++++|++++++.. .|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 3455778999999998888754 46777776653 443 2222222334488999999999988874 57899999
Q ss_pred CCCCCCcceeEEeccCCcC----------eEEEEEccCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669 294 GSEDGNYDCKHTLKDHTAE----------VQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (504)
+...+..........|.+. +....+.|+++++++.+.. -.|.+|++..|......... . ........
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v-~~G~GPRH 195 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-V-KPGAGPRH 195 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-c-CCCCCcce
Confidence 9776554444334456655 8899999999999988652 36999999977654332211 1 22356789
Q ss_pred EEECCCCCEEEEEe-CCCcEEEEEcCCC-ceeeeeeC---------CCCCeEEEEEcCCCcEEEEEeCC--cEEEEEcCC
Q 010669 363 AAFHPDGLILGTGT-SEALVKIWDVKSQ-ANVAKFDG---------HVGAVTAISFSENGYYLATAAHD--GVKLWDLRK 429 (504)
Q Consensus 363 ~~~~pdg~~l~~g~-~dg~I~iwd~~~~-~~~~~~~~---------~~~~i~~l~~s~~g~~l~s~~~d--~v~vwd~~~ 429 (504)
+.|||++++..+.+ -+++|.+|..... ..+..+.. -......|..++||++|.++... .|.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999999887765 4899999998763 22222221 12356789999999999998765 388888764
Q ss_pred Ccc-eeeeec-CCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669 430 LKN-FRSFES-SDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 430 ~~~-~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
... +..... .......+.+.|+++|++|++++.+ +.+|..+..+.....+.+... .....|+.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~---~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV---VPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC---CCCcEEEEEc
Confidence 322 222221 2224457899999999999999877 999998664333333333211 3455666664
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=7.4e-13 Score=133.66 Aligned_cols=217 Identities=10% Similarity=0.066 Sum_probs=149.0
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeC---CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCc--EEEEe
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKT--VRVWQ 293 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~--i~iwd 293 (504)
..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+.|+ +.+.+|. |.+||
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 346678999999999998887653 468999999887653 4445666778899999998765 5566665 66668
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~ 370 (504)
+.++ ....+..+........|+|+|+.|+..+. +| .|++||+.++....... ....+....|+|||+
T Consensus 277 ~~~~----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~------~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 277 LRSG----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF------GGGRYSTPVWSPRGD 346 (435)
T ss_pred CCCC----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec------CCCcccCeEECCCCC
Confidence 7663 23445556666778999999998887764 33 68888987765433321 123456688999999
Q ss_pred EEEEEeCC---CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCCCcceeeeecCC
Q 010669 371 ILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD------G-VKLWDLRKLKNFRSFESSD 440 (504)
Q Consensus 371 ~l~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~~~~~~~~~~~~ 440 (504)
.|+....+ ..|.+||+..+. ...+. ....+....|+|||++|+..+.+ . +.++|+..+.. ..+..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-- 421 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-- 421 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC--
Confidence 99876643 368888875543 23332 22356788999999988765432 3 77788865443 34432
Q ss_pred CCCCeeEEEECCC
Q 010669 441 SETPTNSVDFDHS 453 (504)
Q Consensus 441 ~~~~v~~i~~~~~ 453 (504)
...+...+|+|-
T Consensus 422 -~~~~~~p~Wsp~ 433 (435)
T PRK05137 422 -PGDASDPAWSPL 433 (435)
T ss_pred -CCCccCcccCCC
Confidence 234667778763
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=4.1e-13 Score=119.06 Aligned_cols=155 Identities=18% Similarity=0.241 Sum_probs=112.0
Q ss_pred EEEEeccCCCEEEEEeC----------CCcEEEEcCCC-CceEEEccc-CccceeEEEEeeCCCEEEE--EeCCCcEEEE
Q 010669 227 VSLDIHYSKDVIATGGV----------DTNAVLFDRPS-GQIVTTLSG-HSKKVTSVKFVTEGDLFLT--GSADKTVRVW 292 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~----------dg~i~vwd~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~s--~s~dg~i~iw 292 (504)
..+.|+++|++|++-.. -|...+|.+.. +..+..+.- ..++|.+++|+|+|+.|++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987665432 12344554422 233344432 3457999999999997654 4467899999
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg 369 (504)
|++. ..+..+ +...+..+.|+|+|+++++++.+ |.+.+||+++.+.+.... | ..++.++|+|||
T Consensus 89 d~~~----~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~------~-~~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVKG----KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE------H-SDATDVEWSPDG 155 (194)
T ss_pred cCcc----cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc------c-CcEEEEEEcCCC
Confidence 9963 555555 35678899999999999998754 679999999888876653 2 347899999999
Q ss_pred CEEEEEeC------CCcEEEEEcCCCceeeee
Q 010669 370 LILGTGTS------EALVKIWDVKSQANVAKF 395 (504)
Q Consensus 370 ~~l~~g~~------dg~I~iwd~~~~~~~~~~ 395 (504)
++|+++.. |+.++||+. .|+.+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99999874 678999998 46655543
No 236
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.3e-14 Score=142.02 Aligned_cols=203 Identities=19% Similarity=0.281 Sum_probs=152.5
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
.-++|.....+|+++|.-..|+|||......+..+. +....|+++.-+. .|+.++.|..||.|++||.+....-..+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 456788766677777778899999998877777665 3445577775543 57899999999999999988754434566
Q ss_pred EeccCCcC--eEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 305 TLKDHTAE--VQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 305 ~~~~h~~~--v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
..+.|+.. |..+.+.+.|- .+++|+.||.|++||++.......+.....-...+..+++..|++..++|+|+. +.|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 77788887 99999998665 599999999999999998522221111100011124899999999999999998 999
Q ss_pred EEEEcCCCceeeeeeC-------CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669 382 KIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 431 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~ 431 (504)
+||++. |+.+..++. ..+.+.|++|+|...++++|+.|. |.||...+..
T Consensus 1328 kIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999984 444433332 235789999999999999999998 9999876643
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=9.1e-12 Score=121.51 Aligned_cols=258 Identities=14% Similarity=0.150 Sum_probs=166.3
Q ss_pred CEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669 236 DVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (504)
Q Consensus 236 ~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (504)
+++ ++-..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+. +.+.++... ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G-~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG-GNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-CCcc
Confidence 444 45567899999999999999999865444455789999999999999999999999886 566666543 4468
Q ss_pred EEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCC--CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCc
Q 010669 315 AVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQA 390 (504)
Q Consensus 315 ~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~~~~~ 390 (504)
+++++++|++++++. .++.+.++|.++.+.+..+...+.. .....+..+..+|....+++.-. .+.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 899999999988775 5899999999999998887632111 13456778888888886665544 5889888987765
Q ss_pred eee-eeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCC---------------------------
Q 010669 391 NVA-KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSD--------------------------- 440 (504)
Q Consensus 391 ~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~--------------------------- 440 (504)
.+. .............|+|+++|++++... . |-++|..+++.+..+....
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 432 222234567889999999988776543 3 8888877654433221100
Q ss_pred ------------C-------------CCCeeEEEECCCCCEEEEE---eCc---EEEEEeeccCccceeEEEccCCCCCC
Q 010669 441 ------------S-------------ETPTNSVDFDHSGSYLAVA---SAD---IRVYQVASVKADWNCIKTFPDLSGTG 489 (504)
Q Consensus 441 ------------~-------------~~~v~~i~~~~~g~~l~~~---~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~ 489 (504)
+ .+.-..+..+|+++++.+. +.+ |.|+|. ++.+.+.++.... ..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~----~tl~~~~~i~~~~-~~ 316 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDK----KTLKVVKTITPGP-GK 316 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEEC----CGTEEEE-HHHHH-T-
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEEC----cCcceeEEEeccC-CC
Confidence 0 0111456679999999998 444 999998 6677778775431 22
Q ss_pred ceeEEEEeecCcc
Q 010669 490 AASFLFLFVLGQT 502 (504)
Q Consensus 490 ~v~~l~~~~~g~~ 502 (504)
.+..+.|.++|..
T Consensus 317 ~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 317 RVVHMEFNPDGKE 329 (369)
T ss_dssp -EEEEEE-TTSSE
T ss_pred cEeccEECCCCCE
Confidence 4889999999864
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=6.9e-12 Score=122.38 Aligned_cols=245 Identities=18% Similarity=0.206 Sum_probs=162.4
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCcceeEE
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 305 (504)
..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++++||+++++++ .++.+.++|..+. +.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl---e~v~~ 115 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL---EPVKT 115 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc---cceee
Confidence 457799999999999999999999999999999998544 468899999999988765 6899999998875 45554
Q ss_pred ecc-------CCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-e
Q 010669 306 LKD-------HTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-T 376 (504)
Q Consensus 306 ~~~-------h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~ 376 (504)
+.. ....+.++..+|....++..-. .+.|.+.|....+....... ..........|+|++++++++ .
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i----~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI----KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE----E--TTEEEEEE-TTSSEEEEEEG
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee----cccccccccccCcccceeeeccc
Confidence 432 2346788888888886665555 48888889876543322111 112357789999999987665 4
Q ss_pred CCCcEEEEEcCCCceeeeee-------------CC-----------------------------------------CCCe
Q 010669 377 SEALVKIWDVKSQANVAKFD-------------GH-----------------------------------------VGAV 402 (504)
Q Consensus 377 ~dg~I~iwd~~~~~~~~~~~-------------~~-----------------------------------------~~~i 402 (504)
.++.|-++|.++++.+..+. .| .+.-
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 56678888887765433211 00 0111
Q ss_pred EEEEEcCCCcEEEEE---eCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc----EEEEEeeccC
Q 010669 403 TAISFSENGYYLATA---AHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVK 473 (504)
Q Consensus 403 ~~l~~s~~g~~l~s~---~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d----i~vw~~~~~~ 473 (504)
..+.-+|++.++.+. +.+ . |.++|.++.+.+..+.... ...+..+.|+++|.++..+..+ |.|||-
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~---- 346 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA---- 346 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEET----
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEEC----
Confidence 345669999999998 444 4 9999999988777765421 2358899999999988776544 999997
Q ss_pred ccceeEEEccC
Q 010669 474 ADWNCIKTFPD 484 (504)
Q Consensus 474 ~~~~~i~~~~~ 484 (504)
++++.++.++.
T Consensus 347 ~Tl~~~~~i~~ 357 (369)
T PF02239_consen 347 KTLKEKKRIPV 357 (369)
T ss_dssp TTTEEEEEEE-
T ss_pred CCcEEEEEEEe
Confidence 88999888863
No 239
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-12 Score=119.48 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=145.4
Q ss_pred cccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~ 295 (504)
+...|...|..++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. ++++.|..+|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4556677899999999887 7888999999999999999999999888 789999998754 578888899999999998
Q ss_pred CCCCcceeEEeccCCcCeEEEEEcc------CCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECC
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHA------TNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p------~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
..........-.-...+|..++.-+ .|.+++..+.+ ...|.+.-. ....... .+..+...++++++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle----le~pG~cismqy~~ 340 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE----LEPPGICISMQYHG 340 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc----cCCCcceeeeeecC
Confidence 7543222111111223455444322 34444444332 345554321 1111111 12234566777777
Q ss_pred CCCEE-EEEeCCC------cEE-EEEcCCCceeeeee-CC-CCC-----eE-EEEEcCCCcEEEEEeCC-c-EEEEEcCC
Q 010669 368 DGLIL-GTGTSEA------LVK-IWDVKSQANVAKFD-GH-VGA-----VT-AISFSENGYYLATAAHD-G-VKLWDLRK 429 (504)
Q Consensus 368 dg~~l-~~g~~dg------~I~-iwd~~~~~~~~~~~-~~-~~~-----i~-~l~~s~~g~~l~s~~~d-~-v~vwd~~~ 429 (504)
..+.+ ++.-.+. .|- --|-+.|.++..-+ ++ .+. -+ .+.-.++.++++.-+++ . +.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 44443 3332211 011 11222333322111 11 000 01 11123345566555555 3 99999999
Q ss_pred CcceeeeecCCCCCCeeEEEECC--CCCEEEEEeCc-EEEEEe
Q 010669 430 LKNFRSFESSDSETPTNSVDFDH--SGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~i~~~~--~g~~l~~~~~d-i~vw~~ 469 (504)
+..++++... .+|..++... .+.||++-.++ ++||..
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheecceEEEEec
Confidence 9999988774 5777776544 34688888888 999875
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=6.3e-12 Score=126.79 Aligned_cols=204 Identities=14% Similarity=0.143 Sum_probs=138.7
Q ss_pred CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320 (504)
Q Consensus 244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 320 (504)
...|.++|..... ...+..+...+....|+|+|++|+.++.+ ..|.+||+.++. . ..+..+.+.+.++.|+|
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~-~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---R-EKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---E-EEeecCCCCccceEECC
Confidence 3457788875433 44455566778999999999998877644 479999998742 2 22334555677899999
Q ss_pred CCCEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeee
Q 010669 321 TNKYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK 394 (504)
Q Consensus 321 ~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~ 394 (504)
+|+.|+. .+.++ .|++||+.++...... .+........|+|||+.|+..+. ++ .|+++|+.+++. ..
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~ 316 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RR 316 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 9987764 44444 5889999887543322 12223456789999998876654 33 588888876653 33
Q ss_pred eeCCCCCeEEEEEcCCCcEEEEEeCC----cEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 395 FDGHVGAVTAISFSENGYYLATAAHD----GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 395 ~~~~~~~i~~l~~s~~g~~l~s~~~d----~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
+..+...+..+.|+|+|.+|+.++.+ .|.+||+.++.. ..+... .......|+|+|++|+..+.+
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT---GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC---CCCCCceECCCCCEEEEEEeC
Confidence 44345567788999999998887765 288999887543 223221 223456899999999887765
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.3e-12 Score=120.15 Aligned_cols=215 Identities=15% Similarity=0.200 Sum_probs=161.1
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc----eEEEcccCccceeEEEEeeCC-CEEEEEeCC--CcEEEEeCCC
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEG-DLFLTGSAD--KTVRVWQGSE 296 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~d--g~i~iwd~~~ 296 (504)
.+|..+... ...|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++.. ..+++||.. ..+.|||+..
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 345444433 3467777889999999987442 23333333 346666666643 456668888 8899999986
Q ss_pred CCCcceeEEeccC-----------CcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCCCCCCeEE
Q 010669 297 DGNYDCKHTLKDH-----------TAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 297 ~~~~~~~~~~~~h-----------~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~ 362 (504)
. . ..+.+. .-.++++.|-+. ...|++++.-+.+++||.+.++.. ..+. ....++++
T Consensus 183 ~---~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-----~~E~~is~ 252 (412)
T KOG3881|consen 183 S---K--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-----FLENPISS 252 (412)
T ss_pred c---e--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-----cccCccee
Confidence 4 2 222211 123567888887 789999999999999999976543 3332 23568999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeee-eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC
Q 010669 363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 440 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~ 440 (504)
+...|+|+++++|...|.+..||++.++.... +++..+.|++|..+|++.+|++++-|. |+|+|+.+.+.+.....
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-- 330 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-- 330 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--
Confidence 99999999999999999999999999988776 888999999999999999999999998 99999999777665544
Q ss_pred CCCCeeEEEECCCC
Q 010669 441 SETPTNSVDFDHSG 454 (504)
Q Consensus 441 ~~~~v~~i~~~~~g 454 (504)
...++++.+.++-
T Consensus 331 -Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 331 -KSRLTFILLRDDV 343 (412)
T ss_pred -hccccEEEecCCc
Confidence 3567777776543
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.6e-12 Score=118.29 Aligned_cols=198 Identities=20% Similarity=0.313 Sum_probs=141.4
Q ss_pred cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCe
Q 010669 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGI 343 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~ 343 (504)
..+..++|++.-..++++..|-.|++||-.. .+...++ .....|++++|-|.+ ..|++|+. +.|.+|.....-
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss----t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC----CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 3467889988666788999999999998765 2333333 234679999999965 45666665 558999775321
Q ss_pred EEEE----ee-----cCCCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcE
Q 010669 344 CLTQ----VS-----DAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413 (504)
Q Consensus 344 ~~~~----~~-----~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 413 (504)
.... .. .....+| ..|+++.|.+||..+++++. |..|.|||..++..+.-..-..+.++-+.|||||.+
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 1111 00 0012234 68999999999999998874 678999999988766544334568999999999999
Q ss_pred EEEEeCCc-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeecc
Q 010669 414 LATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASV 472 (504)
Q Consensus 414 l~s~~~d~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~ 472 (504)
|++++-|+ .++|.... ....+-... .+.|...+|+|+|++|...... -++|.+...
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred EEEecccceeeeehhcccceecceecc---CCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 99999998 99995543 333333323 4589999999999988776665 778877543
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=1.6e-10 Score=112.93 Aligned_cols=262 Identities=14% Similarity=0.238 Sum_probs=172.6
Q ss_pred EEEEeCC----CcEEEEcC--CCCce--EEEcccCccceeEEEEeeCCCEEEEEeC----CCcEEEEeCCCC-CCcceeE
Q 010669 238 IATGGVD----TNAVLFDR--PSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA----DKTVRVWQGSED-GNYDCKH 304 (504)
Q Consensus 238 l~sg~~d----g~i~vwd~--~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~----dg~i~iwd~~~~-~~~~~~~ 304 (504)
+++|+.. +.|++|++ .++++ +..+. -......++++|++++|+++.. +|.|..|++... +.+..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 67888877 44443 22222 3344677899999999998876 579999998875 4445555
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCC-CeEEEEee---c--CCC---CCCCCCeEEEEECCCCCEEEE
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSS-GICLTQVS---D--AGT---DGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~-~~~~~~~~---~--~~~---~~~~~~v~~~~~~pdg~~l~~ 374 (504)
...........++++|++++++++.. +|.|.++++.. +....... . .+. ........++.|+|||+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 55434455678999999999998875 88999999987 43332211 0 000 112345789999999998877
Q ss_pred Ee-CCCcEEEEEcCCCc--e--eeeee-CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcC--CCc--ceeeeecC---
Q 010669 375 GT-SEALVKIWDVKSQA--N--VAKFD-GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLR--KLK--NFRSFESS--- 439 (504)
Q Consensus 375 g~-~dg~I~iwd~~~~~--~--~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~--~~~--~~~~~~~~--- 439 (504)
.. ....|++|++.... . ...+. ........+.|+|+|+++++..+. + |.+|++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 64 34589999997654 2 12222 234578899999999999888776 3 9999888 332 22333221
Q ss_pred -CCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 440 -DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 440 -~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
........+.++|||++|+++... |.+|+++......+.+..+... ......+.+.|+|+.
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRY 305 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCE
Confidence 112257889999999999988654 9999996554556666666542 345788999999874
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.1e-11 Score=122.02 Aligned_cols=232 Identities=15% Similarity=0.072 Sum_probs=146.8
Q ss_pred cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC
Q 010669 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 322 (504)
Q Consensus 246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 322 (504)
.|.++|...+. ...+..+...+....|+|||+.|+..+.+ ..|.+||+.++. ...+....+.+....|+|+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----~~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----REQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----EEEccCCCCCcCCeEECCCC
Confidence 47777876544 34455567789999999999988776543 368889997742 12233333445678999999
Q ss_pred CEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeee
Q 010669 323 KYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 396 (504)
Q Consensus 323 ~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~~ 396 (504)
+.|+. .+.+| .|++||+.++.... +. .+........|+|||+.++..+. +| .|+++|+.+++... +.
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt 327 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VT-----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT 327 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-cc-----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence 98774 44455 68888999876543 32 22234566789999997776553 33 57777887766432 22
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669 397 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (504)
Q Consensus 397 ~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~ 469 (504)
..........|+|+|.+|+..+.+ + |.+||+.++.. ..+... .......|+|+|+.++..+.+ .++|-+
T Consensus 328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 112234467899999998877643 2 88999987754 333221 122356899999999887654 444444
Q ss_pred eccCccceeEEEccCCCCCCceeEEEEee
Q 010669 470 ASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 470 ~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
.. .+.....+..+ .+.+...+++|
T Consensus 404 ~~---~g~~~~~l~~~--~g~~~~p~ws~ 427 (430)
T PRK00178 404 SI---NGRVRLPLPTA--QGEVREPSWSP 427 (430)
T ss_pred EC---CCCceEECcCC--CCCcCCCccCC
Confidence 22 23344445443 44555555554
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=7.9e-12 Score=120.95 Aligned_cols=187 Identities=19% Similarity=0.292 Sum_probs=150.9
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCCceEEEccc---CccceeEEEEe--------------------eCCCEEEEEeCCCcE
Q 010669 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG---HSKKVTSVKFV--------------------TEGDLFLTGSADKTV 289 (504)
Q Consensus 233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s--------------------~~~~~l~s~s~dg~i 289 (504)
|...++|....||.+++|+...++....|.. -.+..++..|. .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887666642 23444555553 123367788889999
Q ss_pred EEEeCCCCCCcceeEEe--ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669 290 RVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 290 ~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
.+|++..+ +....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+...++.+.... .....+.+++++|
T Consensus 83 ~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-----~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-----EQKPLVSSLCISP 154 (541)
T ss_pred EEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-----cCCCccceEEEcC
Confidence 99998875 344444 4799999999999888999999999999999999998888776 3345789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC-----CcEEEEEeCC--cEEEEEcCC
Q 010669 368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-----GYYLATAAHD--GVKLWDLRK 429 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----g~~l~s~~~d--~v~vwd~~~ 429 (504)
||.++++++ +.|++||+.+++.+..|.+|.++|++++|-.+ |.+++++..- ++.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999875 68999999999999999999999999999887 7777776543 388887654
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.9e-11 Score=122.18 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=142.9
Q ss_pred CCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCC--cEEEEeC
Q 010669 221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG 294 (504)
Q Consensus 221 ~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg--~i~iwd~ 294 (504)
.+...+....|+|||+.|+..+.+ ..|++|++.+++... +....+.+....|+|||+.|+ +.+.+| .|.+||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345678999999999988776543 368999998876533 333344456789999999776 455555 5778888
Q ss_pred CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
.++ ....+..+........|+|+|+.|+..+. +| .|+++|+.+++....... + .......|+|||+.
T Consensus 275 ~~~----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----~--~~~~~~~~Spdg~~ 344 (430)
T PRK00178 275 ASR----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----G--NYNARPRLSADGKT 344 (430)
T ss_pred CCC----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----C--CCccceEECCCCCE
Confidence 764 22334455555677899999998776654 33 577888887764332211 1 12345789999999
Q ss_pred EEEEeCC-C--cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCC
Q 010669 372 LGTGTSE-A--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETP 444 (504)
Q Consensus 372 l~~g~~d-g--~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~ 444 (504)
++..+.+ + .|.+||+.+++... +. +........|+|||++++..+.+ . +.++++.. .....+... .+.
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g~ 419 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QGE 419 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CCC
Confidence 8877643 3 58889998775432 22 11222356899999998877654 2 77778753 333344432 345
Q ss_pred eeEEEECCC
Q 010669 445 TNSVDFDHS 453 (504)
Q Consensus 445 v~~i~~~~~ 453 (504)
+...+|+|-
T Consensus 420 ~~~p~ws~~ 428 (430)
T PRK00178 420 VREPSWSPY 428 (430)
T ss_pred cCCCccCCC
Confidence 667778763
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=5.1e-11 Score=120.23 Aligned_cols=232 Identities=13% Similarity=0.047 Sum_probs=144.2
Q ss_pred cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CC--cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC
Q 010669 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 322 (504)
Q Consensus 246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 322 (504)
.+.++|...... +.+..+...+.+..|+|||+.|+..+. ++ .|.+||+.++. ...+..+ .+......|+|+|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~---~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF---PGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC---CCCcCCeeECCCC
Confidence 566777654433 445556778899999999998876653 33 58888887642 1222222 2334578999999
Q ss_pred CEEEE-EeCCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeee
Q 010669 323 KYFVT-ASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 396 (504)
Q Consensus 323 ~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~~ 396 (504)
+.|+. .+.+|. |++||+.+++... +. .+.......+|+|||+.|+..+. +| .|+++|+.+++... +.
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt 346 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-IT-----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT 346 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence 97765 455664 8888988776433 22 12234567899999998776553 33 46777877765432 22
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669 397 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 469 (504)
Q Consensus 397 ~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~ 469 (504)
.........+|+|||++|+..+.+ + |.++|+.++... .+... .......|+|+|++|+..+.+ ..+|-+
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 122233457899999988776553 2 666788776542 22221 112245799999998876654 334443
Q ss_pred eccCccceeEEEccCCCCCCceeEEEEee
Q 010669 470 ASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 470 ~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
+ .++.....+..+ .+.+...+|+|
T Consensus 423 ~---~~G~~~~~l~~~--~g~~~~p~Wsp 446 (448)
T PRK04792 423 S---IDGRFKARLPAG--QGEVKSPAWSP 446 (448)
T ss_pred E---CCCCceEECcCC--CCCcCCCccCC
Confidence 2 245555666554 45566666665
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2e-11 Score=123.10 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=141.4
Q ss_pred CCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCC--cEEEEeCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQGS 295 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg--~i~iwd~~ 295 (504)
+...+.+.+|+|||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|+|+.|+ +.+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 44568899999999998887644 479999998876533 333555677899999998765 444444 58888887
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
++ ....+..+........|+|+|+.|+.++.. + .|+++|+.+++... +. .+........|+|+|+++
T Consensus 267 ~~----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-----~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 267 GK----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-----FRGGYNASPSWSPDGDLI 336 (417)
T ss_pred CC----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-----cCCCCccCeEECCCCCEE
Confidence 64 223344454555677899999988776543 3 58888888776433 22 122346678999999999
Q ss_pred EEEeCCC---cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCe
Q 010669 373 GTGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 373 ~~g~~dg---~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v 445 (504)
+.++.++ .|.+||+.++... .+... .......|+|+|.+|+..+.++ +++.+.. +.....+..+ .+.+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~g~~ 411 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLG--NGDV 411 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCC--CCCc
Confidence 9888776 7899998875432 22222 2345568999999888876652 5565543 4444444332 2344
Q ss_pred eEEEE
Q 010669 446 NSVDF 450 (504)
Q Consensus 446 ~~i~~ 450 (504)
..+.|
T Consensus 412 ~~~~w 416 (417)
T TIGR02800 412 REPAW 416 (417)
T ss_pred CCCCC
Confidence 44444
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.8e-12 Score=123.30 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=186.0
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc---------------eEEEcccCccceeEEEEeeCCCEEEEEeCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---------------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~---------------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg 287 (504)
.....|+.|+.+..++++||.||.++|..+.+.. .-+++.||++.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4467899999999999999999999999775421 1346779999999999999888899999999
Q ss_pred cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
.|.||-+-.+ .|-....-....+.|.+++|+.+|..|...-.||.|.+=.++.++....-. .+ .....+.|++
T Consensus 94 lIiVWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL----kg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 94 LIIVWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL----KG--QLLAHVLWSE 166 (1189)
T ss_pred eEEEEeeecc-cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc----ch--heccceeecc
Confidence 9999987664 222222223455779999999999999999999999988777654332211 11 2356789999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-------ceeee----eeCCCCCeEEEEEc--------CCCcEEEEEeCCc-EEEEEc
Q 010669 368 DGLILGTGTSEALVKIWDVKSQ-------ANVAK----FDGHVGAVTAISFS--------ENGYYLATAAHDG-VKLWDL 427 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~-------~~~~~----~~~~~~~i~~l~~s--------~~g~~l~s~~~d~-v~vwd~ 427 (504)
|...++.+-.+|.+.+||.... .+... +......|-.+.|. |+...|+.+-.+| +.+..-
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 9999999999999999997532 11111 11122235666664 4677888888888 777655
Q ss_pred CCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----------EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669 428 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----------IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL 496 (504)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----------i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~ 496 (504)
.+......+.. .-.+..+.|+++|.+|+++|.+ |.+|. .-+..+.++... ...|+++++
T Consensus 247 eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvp--g~~It~lsW 316 (1189)
T KOG2041|consen 247 ENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVP--GSCITGLSW 316 (1189)
T ss_pred cCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecC--CceeeeeEE
Confidence 44444444443 3578899999999999999875 33333 345666666554 456777666
Q ss_pred eecC
Q 010669 497 FVLG 500 (504)
Q Consensus 497 ~~~g 500 (504)
=..|
T Consensus 317 Eg~g 320 (1189)
T KOG2041|consen 317 EGTG 320 (1189)
T ss_pred cCCc
Confidence 4443
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.7e-11 Score=118.65 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=159.3
Q ss_pred eCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEc------c--------------CCCEEEEEeCCCeE
Q 010669 275 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH------A--------------TNKYFVTASLDNTW 334 (504)
Q Consensus 275 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~------p--------------~~~~l~s~s~dg~i 334 (504)
|-..+++....||.+++|+...+...........-.+...+..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345688999999999999988763222222222223444444441 1 23467888889999
Q ss_pred EEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEE
Q 010669 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 414 (504)
Q Consensus 335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 414 (504)
.+|++..++....+. ...|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+......+.+++.+|||..|
T Consensus 83 ~~ys~~~g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 999999999888887 34788999999999999999999999999999999999999999888899999999999999
Q ss_pred EEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCC-----CCEEEEEeC-c--EEEEEeeccCccceeEEEcc
Q 010669 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-----GSYLAVASA-D--IRVYQVASVKADWNCIKTFP 483 (504)
Q Consensus 415 ~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~-----g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~ 483 (504)
++++ ..|++||+.+.+.+..|.+| .++|+++.|-.+ |.|+.++.. + +.+|.+....+.......+.
T Consensus 160 ~~as-~~ik~~~~~~kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~ 233 (541)
T KOG4547|consen 160 LTAS-RQIKVLDIETKEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLT 233 (541)
T ss_pred Eecc-ceEEEEEccCceEEEEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeec
Confidence 8875 34999999999999999887 789999999876 777776533 2 99998876555555555443
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.9e-11 Score=121.08 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=138.4
Q ss_pred CCCCeEEEEeccCCCEEEEEeC-C--CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEE-EeCCCc--EEEEeCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGV-D--TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSADKT--VRVWQGS 295 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~-d--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~s~dg~--i~iwd~~ 295 (504)
+...+.+..|+|||+.|+..+. + ..|++||+.+++... +....+......|+|||+.|+. .+.+|. |.+||+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 3557889999999998877653 2 258889998776432 2222333457899999997764 566665 6677776
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
++ ....+..+........|+|+|+.|+..+. ++ .|.++|+.+++....... + ......+|+|||++|
T Consensus 295 tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~----g--~~~~~~~~SpDG~~l 364 (448)
T PRK04792 295 TK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE----G--EQNLGGSITPDGRSM 364 (448)
T ss_pred CC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC----C--CCCcCeeECCCCCEE
Confidence 63 23344455556678899999998876654 33 577778877764432211 1 123456899999988
Q ss_pred EEEeC-CC--cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCe
Q 010669 373 GTGTS-EA--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 373 ~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v 445 (504)
+..+. ++ .|.++|+.+++... +... .......|+|||+.|+..+.+ + +++++. ++.....+... .+.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~ 439 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEV 439 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCc
Confidence 77654 34 45667887775432 2211 122345799999988776544 2 777786 45555555443 3456
Q ss_pred eEEEECC
Q 010669 446 NSVDFDH 452 (504)
Q Consensus 446 ~~i~~~~ 452 (504)
...+|+|
T Consensus 440 ~~p~Wsp 446 (448)
T PRK04792 440 KSPAWSP 446 (448)
T ss_pred CCCccCC
Confidence 7778877
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=122.27 Aligned_cols=235 Identities=18% Similarity=0.226 Sum_probs=173.2
Q ss_pred eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeE
Q 010669 257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTW 334 (504)
Q Consensus 257 ~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i 334 (504)
+...+..|.+.|+.|.|...|..|++|+.|..|.+||+.... ....-..+|...|....|-|. ...+++++.||.+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 345678899999999999999999999999999999998753 223334588888888888883 4689999999999
Q ss_pred EEEECCCCeEEE-EeecCCCCCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeee---CCCC---CeEEEE
Q 010669 335 CFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFD---GHVG---AVTAIS 406 (504)
Q Consensus 335 ~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~pd-g~~l~~g~~dg~I~iwd~~~~~~~~~~~---~~~~---~i~~l~ 406 (504)
++=.+....... ... ...|.+.|.-++.-|+ ..-|.+++.|+.+.-+|++.+.+...+. .+.. ....++
T Consensus 212 r~s~i~~t~~~e~t~r---l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 212 RVSEILETGYVENTKR---LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred eeeeeccccceeccee---cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 987765433332 222 3367789999999994 4678899999999999999876544442 2333 567888
Q ss_pred EcCC-CcEEEEEeCCc-EEEEEcCCCcce------eeeecC----CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc
Q 010669 407 FSEN-GYYLATAAHDG-VKLWDLRKLKNF------RSFESS----DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 472 (504)
Q Consensus 407 ~s~~-g~~l~s~~~d~-v~vwd~~~~~~~------~~~~~~----~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~ 472 (504)
..|. .+.+++|+.|. +++||.+..... ..+..+ .....|++++|+.++.-|.++-+| |++|. +.
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~--~~ 366 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN--KS 366 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec--cc
Confidence 9884 56899999998 999998864322 222211 224578999999887766666666 66663 33
Q ss_pred Cccc----------eeEEE-ccCCCCCCceeEEEEee
Q 010669 473 KADW----------NCIKT-FPDLSGTGAASFLFLFV 498 (504)
Q Consensus 473 ~~~~----------~~i~~-~~~h~~~~~v~~l~~~~ 498 (504)
.+.+ ..++. |+||.+...|-++.||-
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG 403 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG 403 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeecc
Confidence 3334 34444 89998888899998884
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.9e-11 Score=117.53 Aligned_cols=222 Identities=9% Similarity=0.001 Sum_probs=135.8
Q ss_pred CCCeEEEEeccCCCE---EEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CC----cEEEE
Q 010669 223 KPGIVSLDIHYSKDV---IATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVW 292 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~---l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg----~i~iw 292 (504)
...+.+-.|+|||+. +++...+| .|++.++.+++... +....+......|+|||+.|+..+. +| .+.+|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 345667799999974 22444443 57777888775432 2223444566899999988776542 23 34446
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEE--ECCC-CeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFY--DLSS-GICLTQVSDAGTDGRPEGYTSAAFHPD 368 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iw--d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pd 368 (504)
++..+...........+.+......|+|||+.|+..+ .+|...+| ++.. +.....+. .....+....|+||
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----~~~~~~~~p~wSPD 337 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----KKYRNSSCPAWSPD 337 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-----cCCCCccceeECCC
Confidence 6654211122222222233456789999999877665 46654554 4432 22223332 12235678899999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCC
Q 010669 369 GLILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDS 441 (504)
Q Consensus 369 g~~l~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~ 441 (504)
|+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+..+.+ . |++||+..++.......
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--- 413 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--- 413 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC---
Confidence 9988876543 369999998876543322 33456789999999988754432 3 89999987765433322
Q ss_pred CCCeeEEEECCCC
Q 010669 442 ETPTNSVDFDHSG 454 (504)
Q Consensus 442 ~~~v~~i~~~~~g 454 (504)
.+.+...+|+|-.
T Consensus 414 ~g~~~~p~Ws~~~ 426 (428)
T PRK01029 414 SGEKRFPSWGAFP 426 (428)
T ss_pred CCcccCceecCCC
Confidence 3456678888753
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.2e-10 Score=112.22 Aligned_cols=228 Identities=16% Similarity=0.259 Sum_probs=156.6
Q ss_pred EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEE-----EeCCCcEEEEeCCCCCC
Q 010669 227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLT-----GSADKTVRVWQGSEDGN 299 (504)
Q Consensus 227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s-----~s~dg~i~iwd~~~~~~ 299 (504)
++..|+.|..+.+- -..+.+++|++.+.+.+.. +-|...|+.+.++|.+. .+++ .|.-+.|+||.....+.
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 67888887764332 2356799999876443222 23677899999998633 3332 35567899998764322
Q ss_pred cceeEEeccCCcCeEEEEEccCCCE-EEEE--eCC---------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669 300 YDCKHTLKDHTAEVQAVTVHATNKY-FVTA--SLD---------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 300 ~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~--s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
...+..-.-....=..+.|++-|.- |+.+ .-| .++++.+++.......+. ..++|.++.|+|
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~------k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL------KEGPVHDVTWSP 280 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC------CCCCceEEEECC
Confidence 1111111111223356788887763 2222 223 368888888555544442 357899999999
Q ss_pred CCCEEEE--EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCC
Q 010669 368 DGLILGT--GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDS 441 (504)
Q Consensus 368 dg~~l~~--g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~ 441 (504)
+|+-|++ |-.-..+.|||++ +.++..| ..++-+++-|+|.|++++.++-+ | |-|||+.+.+++..+...
T Consensus 281 s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-- 355 (566)
T KOG2315|consen 281 SGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-- 355 (566)
T ss_pred CCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--
Confidence 9987765 4567789999985 4566555 35778899999999999988876 5 999999998888888764
Q ss_pred CCCeeEEEECCCCCEEEEEeCc--------EEEEEe
Q 010669 442 ETPTNSVDFDHSGSYLAVASAD--------IRVYQV 469 (504)
Q Consensus 442 ~~~v~~i~~~~~g~~l~~~~~d--------i~vw~~ 469 (504)
..+-+.|+|||.+++++... ++||++
T Consensus 356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 45668999999999988653 999997
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.4e-11 Score=115.85 Aligned_cols=234 Identities=15% Similarity=0.195 Sum_probs=162.8
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
|...-++.|-.-++.-..|.+|.+..- -|.... +. -...-.+++++. ... |+.++....|.=++++.+ ..+.
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy~-~R-IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqG---rfL~ 169 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHYR-TR-IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQG---RFLN 169 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhh-cCeeee-ee-cCcCCccccccCCCcc-EEEeecCcceEEEEcccc---cccc
Confidence 444444444444444455666655432 122111 11 112234566653 344 444444456777888876 5566
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCCCC-----CCeEEEEECCCCCEEEEEeCC
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRP-----EGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~-----~~v~~~~~~pdg~~l~~g~~d 378 (504)
.+....+.++++..++-..+|++|+.+|.|.+||.+....+..+.... ...+. ..|+++.|+.+|-.+++|+.+
T Consensus 170 P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 170 PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC
Confidence 666667899999999999999999999999999999877666654221 11222 349999999999999999999
Q ss_pred CcEEEEEcCCCceeeeee-CCCCCeEEEEEcCC--CcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 379 ALVKIWDVKSQANVAKFD-GHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~--g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
|.|.|||+|+.+++..-. +...+|..+.|.+. +..+++....-++|||-.+++....+.. ...++.+++-|++.
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSG 326 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCc
Confidence 999999999998876543 23458999999876 4556655444499999999999888765 35699999999999
Q ss_pred EEEEEeCc--EEEEEe
Q 010669 456 YLAVASAD--IRVYQV 469 (504)
Q Consensus 456 ~l~~~~~d--i~vw~~ 469 (504)
+++++..+ +..|-+
T Consensus 327 m~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYI 342 (703)
T ss_pred eEEEecCCCcceeEEc
Confidence 99999887 444443
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.3e-10 Score=113.43 Aligned_cols=213 Identities=10% Similarity=0.076 Sum_probs=130.4
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE---EEEEeCCC--cEEEEeCCCCCCcceeEEeccCCcCeEEEEEc
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL---FLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~---l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (504)
+.|.+.|...+.. +.+......+..-.|+|||+. +++...+| .|.+.++.++. ...+.. ..+......|+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~lt~---~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKKILA---LQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceEeec---CCCCccceEEC
Confidence 4677777764443 345445556677899999974 23444444 46666776642 222332 33445678999
Q ss_pred cCCCEEEEEeC-CC----eEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEE--EcCC-
Q 010669 320 ATNKYFVTASL-DN----TWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIW--DVKS- 388 (504)
Q Consensus 320 p~~~~l~s~s~-dg----~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iw--d~~~- 388 (504)
|||+.|+..+. +| .+..|++..+ .....+.. .........+|+|||+.|+..+ .+|...+| ++..
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec----CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 99998887653 22 3445777653 11222221 1112345679999999777655 46655555 4432
Q ss_pred CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-
Q 010669 389 QANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD- 463 (504)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d- 463 (504)
+.....+..+...+....|+|||++|+..+.+ . |.+||+.+++... +... ...+....|+|||++|+..+.+
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~--~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS--PENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC--CCCccceEECCCCCEEEEEECCC
Confidence 23334444444567789999999988876543 2 9999998876543 3222 2356778999999988865432
Q ss_pred ----EEEEEe
Q 010669 464 ----IRVYQV 469 (504)
Q Consensus 464 ----i~vw~~ 469 (504)
+.+|++
T Consensus 393 g~~~L~~vdl 402 (428)
T PRK01029 393 NESELYLISL 402 (428)
T ss_pred CCceEEEEEC
Confidence 666666
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=5.2e-11 Score=105.73 Aligned_cols=223 Identities=13% Similarity=0.132 Sum_probs=152.3
Q ss_pred CCCcEEEEcCCCCceEE---EcccCccceeEEEEee---CCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCC---cC
Q 010669 243 VDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVT---EGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AE 312 (504)
Q Consensus 243 ~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s~---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~ 312 (504)
..|.+.+|++...+... .....+..+..+.|.- +|. .++-+..+|.|.+|.............+.... ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678888887654433 1122345678888863 555 56677888999999766532111111121111 12
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-c
Q 010669 313 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-A 390 (504)
Q Consensus 313 v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~-~ 390 (504)
..++.|++.+..++++..+|.+.+.+........... -..|........|+. +.+++.+|+.||.+..||+|.. +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~---wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQT---WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccc---ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 4578899999999999999999866655544333111 236778888899987 5679999999999999999943 3
Q ss_pred eeee-eeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCC--CEEEEEeCc-
Q 010669 391 NVAK-FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSG--SYLAVASAD- 463 (504)
Q Consensus 391 ~~~~-~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g--~~l~~~~~d- 463 (504)
.+.. .+.|...|.+|.-+| .+.++++|+.|. |++||.|+ ++++..-.. .+.|+.+.++|.- ..|+++-.+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcC
Confidence 3333 455888999998887 688999999998 99999995 455544333 5789999999953 345555444
Q ss_pred EEEEEeec
Q 010669 464 IRVYQVAS 471 (504)
Q Consensus 464 i~vw~~~~ 471 (504)
.+|-+.+.
T Consensus 278 ~ki~~~~~ 285 (339)
T KOG0280|consen 278 AKILDSSD 285 (339)
T ss_pred ceEEEecc
Confidence 66666644
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=2.1e-11 Score=125.01 Aligned_cols=194 Identities=19% Similarity=0.295 Sum_probs=155.3
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccce----eEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV----TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v----~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
|....+.-+...++.+..+..+.+||...+.....+....... .-+.++++.-++++|+.-+.|.+|+..... .
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--~ 167 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--K 167 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--C
Confidence 4445566677788888889999999998877766665333221 112234555689999999999999988542 2
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
. ..+.+|.+.|.++.|+-+|.+++++|.|.++++|++++.+..... .-+|...+..++|+|+ .+++++.|-+.
T Consensus 168 p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 168 P-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred c-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----cccccceeEEEEeccc--eeEEeccceEE
Confidence 2 257899999999999999999999999999999999998766522 2388999999999998 89999999999
Q ss_pred EEEEcCCCceeeeeeCCCC-CeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669 382 KIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~ 429 (504)
++|+. ++..+..+.+|.+ .|..++..++...+++++.|+ +++||+..
T Consensus 241 rvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99976 4555668887764 799999999999999999998 99999753
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=6.4e-12 Score=134.63 Aligned_cols=200 Identities=21% Similarity=0.346 Sum_probs=163.2
Q ss_pred cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
+.+-..|.++.-+|...+.++|+.||.|++|....++.+..+. ..+..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence 3445678888889999999999999999999998888777664 3348899999999999999999999999998763
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
+.....+.|+....++.|-. ..+++++ .++.+.+||..-......+. ..|..+++++++-|...+|++|
T Consensus 2283 --k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 --KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred --cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEEEec
Confidence 66677788998888888864 5666664 47789999975432222221 2788899999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 439 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~ 439 (504)
+.+|.|++||++..+.++.+.. +. ...++++|+..| ++||++.....++++...
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 9999999999999888877764 44 567888998888 999999988777777653
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=2.1e-11 Score=108.90 Aligned_cols=245 Identities=20% Similarity=0.347 Sum_probs=166.3
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-----eEEEcccCc------------cceeEEEEeeCCC--EEEEE
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLTG 283 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~s~~~~--~l~s~ 283 (504)
...|+++.|...|.||++|...|.|.+|...... ....+++|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999765432 233456654 3588899976443 56777
Q ss_pred eCCCcEEEEeCCCC-------------------CCc--------------------ceeEEe-ccCCcCeEEEEEccCCC
Q 010669 284 SADKTVRVWQGSED-------------------GNY--------------------DCKHTL-KDHTAEVQAVTVHATNK 323 (504)
Q Consensus 284 s~dg~i~iwd~~~~-------------------~~~--------------------~~~~~~-~~h~~~v~~l~~~p~~~ 323 (504)
+.|.+|++|.+... +.. .+.+.. ..|.--|.++.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 88999999975432 000 000111 35777788999998777
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeec---CCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCce------ee
Q 010669 324 YFVTASLDNTWCFYDLSSGICLTQVSD---AGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN------VA 393 (504)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~------~~ 393 (504)
.++++ .|=.|.+|+++-......+.. .....-...|++..||| ..+.+.-.+..|.|++-|+|.... +.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77765 567899999875433333221 11111124578999999 456777788899999999985321 11
Q ss_pred e----------eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCc-ceeeeecCCC----------CCC---eeEEE
Q 010669 394 K----------FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK-NFRSFESSDS----------ETP---TNSVD 449 (504)
Q Consensus 394 ~----------~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~-~~~~~~~~~~----------~~~---v~~i~ 449 (504)
. |.+-...|..+.|+++|+++++-+.-.|++||.+..+ ++.++..+.. ... -..+.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1 1122357889999999999998877779999998654 5666644321 112 24578
Q ss_pred ECCCCCEEEEEeCc--EEEEE
Q 010669 450 FDHSGSYLAVASAD--IRVYQ 468 (504)
Q Consensus 450 ~~~~g~~l~~~~~d--i~vw~ 468 (504)
|+.+...+.+|+.. .-+|-
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred ecCCcccccccccccceeeec
Confidence 88888888888766 55554
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=7.2e-09 Score=99.04 Aligned_cols=227 Identities=13% Similarity=0.152 Sum_probs=157.6
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC----------CCcEEEEeCCCCCCcceeEEeccC-----
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA----------DKTVRVWQGSEDGNYDCKHTLKDH----- 309 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~h----- 309 (504)
+.|.+.|..+++.+.++.....+- .+ ++||++.|+++.. +..|.+||..+. +.+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCCchh
Confidence 899999999999988887544333 34 8999998777665 789999999886 555554421
Q ss_pred --CcCeEEEEEccCCCEEEEEe-C-CCeEEEEECCCCeEEEEeecCCC----------------CCCC----------CC
Q 010669 310 --TAEVQAVTVHATNKYFVTAS-L-DNTWCFYDLSSGICLTQVSDAGT----------------DGRP----------EG 359 (504)
Q Consensus 310 --~~~v~~l~~~p~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~----------~~ 359 (504)
...-..++++|+|+++++.. . +..|.++|+.+++.+..+..... ++.. ..
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 12234788999999998776 3 68999999998877765542110 0000 00
Q ss_pred eEEE--------------EECC-CCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeC-------CCCCeEEEEEcCCCc
Q 010669 360 YTSA--------------AFHP-DGLILGTGTSEALVKIWDVKSQ-----ANVAKFDG-------HVGAVTAISFSENGY 412 (504)
Q Consensus 360 v~~~--------------~~~p-dg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~-------~~~~i~~l~~s~~g~ 412 (504)
.... .|.+ +|.++++... |.|.+.|+... ..+..+.. ..+.+.-++++++|.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 1111 1233 7887777766 99999996433 22322211 233445599999998
Q ss_pred EEEEEe----------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC--c-EEEEEeeccCccce
Q 010669 413 YLATAA----------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA--D-IRVYQVASVKADWN 477 (504)
Q Consensus 413 ~l~s~~----------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~--d-i~vw~~~~~~~~~~ 477 (504)
.+++.. ..+ |.++|..+++.+..+.. ...+..++++|||+ +|++... + +.++|. .+.+
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~----~t~k 333 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA----ETGK 333 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC----cCCe
Confidence 888743 113 99999999999998876 35899999999999 7776553 2 999998 7788
Q ss_pred eEEEccC
Q 010669 478 CIKTFPD 484 (504)
Q Consensus 478 ~i~~~~~ 484 (504)
.++++..
T Consensus 334 ~i~~i~~ 340 (352)
T TIGR02658 334 ELSSVNQ 340 (352)
T ss_pred EEeeecc
Confidence 8888743
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=1.2e-10 Score=103.38 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=163.3
Q ss_pred CCCCeEEEEecc---CCC-EEEEEeCCCcEEEEcCCCCceEEEcccCc------cceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669 222 SKPGIVSLDIHY---SKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHS------KKVTSVKFVTEGDLFLTGSADKTVRV 291 (504)
Q Consensus 222 ~~~~I~~~~~s~---~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~------~~v~~l~~s~~~~~l~s~s~dg~i~i 291 (504)
-.+.+..+.|.. +|. .++-+-.+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345666777764 455 56677788999999765444333333221 12457788888888999999999986
Q ss_pred EeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECC-C
Q 010669 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP-D 368 (504)
Q Consensus 292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p-d 368 (504)
-+... ...+..+..+.|.-+++...|+. +.+.+++|+.|+.+..||++..+ .+..- ...|..+|.++.-+| .
T Consensus 148 v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 148 VYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSPPK 222 (339)
T ss_pred Eecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCCCC
Confidence 55443 33345557889999999999976 44689999999999999999433 22221 236778899999888 7
Q ss_pred CCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEEEEEcCC--CcEEEEEeCCcEEEEEcCCCcce-----eeeecCC
Q 010669 369 GLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNF-----RSFESSD 440 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~--g~~l~s~~~d~v~vwd~~~~~~~-----~~~~~~~ 440 (504)
+.++++|+.|-.|++||.|+ ++++..-. -.+.|..+.++|. +..|+++-.+|.+|-+....... ...+.
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~-- 299 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI-- 299 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc--
Confidence 88999999999999999995 56665544 3478999999994 45667777777888887654322 12222
Q ss_pred CCCCeeEEEECCCCCEEEEEe
Q 010669 441 SETPTNSVDFDHSGSYLAVAS 461 (504)
Q Consensus 441 ~~~~v~~i~~~~~g~~l~~~~ 461 (504)
+.+-+..-.|+....+|++++
T Consensus 300 hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 300 HDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ccceeeccccccccceeeeee
Confidence 244556666765567788865
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=3.4e-10 Score=99.39 Aligned_cols=236 Identities=17% Similarity=0.140 Sum_probs=160.7
Q ss_pred EEEecc-----CCCEEEEEeCCCcEEEEcCCCCce-EEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 228 SLDIHY-----SKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 228 ~~~~s~-----~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
.+.|-| ...+|+.||.-|...+|...+.+. ......|...|+-+.=..+ ..-+..++.|.++++.+++.+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 355655 234899999999999999886544 3333444443332211112 224777889999999998775321
Q ss_pred ceeEEeccCCc--CeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 301 DCKHTLKDHTA--EVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 301 ~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
. ..|.. .+.++.++++++++++.+....|..|.+.... .+..+... .....-.+..|+.....+|++..
T Consensus 152 ~-----~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 152 F-----AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA---PTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred c-----eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---ccCCCceeeeeccCcceEEEEec
Confidence 1 12333 37889999999999999999999999886532 22222211 23345678899999999999999
Q ss_pred CCcEEEEEcCCCceeee-----eeCCCCCeEEEEEcCCCc--EEEEEeCCc-EEEEEcCCCcceeeeecCCC------CC
Q 010669 378 EALVKIWDVKSQANVAK-----FDGHVGAVTAISFSENGY--YLATAAHDG-VKLWDLRKLKNFRSFESSDS------ET 443 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~-----~~~~~~~i~~l~~s~~g~--~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~------~~ 443 (504)
||++.|||+|....... -..|.+++..+.|++.|. +|+..-.-+ +.+.|+|+++..+.+...+. ..
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQ 303 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccc
Confidence 99999999987543222 234889999999998653 233322224 99999999887666654322 13
Q ss_pred CeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669 444 PTNSVDFDHSGSYLAVASAD-IRVYQVAS 471 (504)
Q Consensus 444 ~v~~i~~~~~g~~l~~~~~d-i~vw~~~~ 471 (504)
.+..-.|+.++.-+.+.+++ +.=|++.+
T Consensus 304 ~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred ccccccccCCCcccccccchhhheeeccc
Confidence 47777888888887777777 77677633
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.6e-10 Score=108.52 Aligned_cols=258 Identities=16% Similarity=0.191 Sum_probs=180.0
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-----------CCcEEEEeC
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----------DKTVRVWQG 294 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-----------dg~i~iwd~ 294 (504)
-+-+.|||.|.||++--.-| |.+|--.+-..++.+. |.+ |.-+.|||+.++|+|=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999988776 8899765555555555 554 889999999999998653 257999999
Q ss_pred CCCCCcceeEEecc---CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669 295 SEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371 (504)
Q Consensus 295 ~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~ 371 (504)
.++ ...+.+.. ....-.-+.|+.|+++++.-.. ..|.||+..+...+-.-. -....|....|+|.+++
T Consensus 290 ~tG---~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-----lki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 290 ATG---LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-----LKISGIRDFSWSPTSNL 360 (698)
T ss_pred ccc---chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----cCCccccCcccCCCcce
Confidence 997 33343332 2222345689999999998776 568899876643322111 22357899999999988
Q ss_pred EEEEeC-----CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC-------C----cEEEEEcCCCcc-ee
Q 010669 372 LGTGTS-----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-------D----GVKLWDLRKLKN-FR 434 (504)
Q Consensus 372 l~~g~~-----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~-------d----~v~vwd~~~~~~-~~ 434 (504)
||-=+. -..+.+-.+.+++.+++-.-|+-.=..+-|-.+|.+|+.--+ . ++.|+.++.... +.
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 886432 134666777777666665545433345677788988876421 1 266777775442 33
Q ss_pred eeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 435 SFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 435 ~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.+.. ...|...+|.|.|+.+++.+.+ +.+|.+....+.++++..|+.. ..+.+.++|.|+-
T Consensus 441 ~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~----~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 441 VVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK----FANTVFWSPKGRF 506 (698)
T ss_pred eeec---chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc----ccceEEEcCCCcE
Confidence 3333 4678999999999877765543 9999998767788999988653 5678889998873
No 265
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=8e-13 Score=132.51 Aligned_cols=223 Identities=19% Similarity=0.296 Sum_probs=170.6
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC--cEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~ 295 (504)
.++.|....+|++|+-+.+.|++|+..|.|++|++.+|.....+.+|..+|+.+.-+.+|..+++.+.-. -..+|++.
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 4556778999999999999999999999999999999999999999999999999998999777655433 46799987
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
.. ....+++. .-.++.|+.....-+.|+......+||++++....++... ..+....-++..|+|+..+++
T Consensus 1176 s~--~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1176 ST--GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred cc--cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhhccccccCCCcceEe--
Confidence 53 24455553 3467888766555566666677899999999877664322 113333447899999888776
Q ss_pred eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
.|| .+||+|..+.++.|......+ .=.|+|+|..++..+ .|||+|+.+.++..... .-..+.|+..|.
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L----dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL----DQCAVTFNSTGD 1314 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHHHHhcCccc----cceEEEeccCcc
Confidence 466 469999998888887554332 335999999888876 58999999988877654 346788999998
Q ss_pred EEEEEe
Q 010669 456 YLAVAS 461 (504)
Q Consensus 456 ~l~~~~ 461 (504)
.++..-
T Consensus 1315 VmYa~~ 1320 (1516)
T KOG1832|consen 1315 VMYAML 1320 (1516)
T ss_pred chhhhh
Confidence 887654
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1e-11 Score=118.78 Aligned_cols=275 Identities=13% Similarity=0.127 Sum_probs=179.6
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-------CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~ 290 (504)
-+.+|...|.+++--.+.+-+++++.|++|++|.++. ..+..+++.|..+|.++.|..+.++++++ ||-|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 3567888888887666788899999999999998753 24667889999999999999888777654 88999
Q ss_pred EEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
+||.--+........-..| +.+..+..-+ +...++ .++...+|+++|.+.+.....++.....+....+.+++.-+
T Consensus 808 lWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9997654211111111112 2333333333 333443 34778899999999988877776544445567789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEE-EEcCCCcceeeeecCCCCCCe
Q 010669 368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL-WDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~v-wd~~~~~~~~~~~~~~~~~~v 445 (504)
.|+.++++-.+|+|.+.|.|+|+.+..+.........++ .|....|+....|. +.+ |-...+......+.+ ..+.
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp--pepa 963 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP--PEPA 963 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC--Ccch
Confidence 999999999999999999999999988876655554454 34556677666665 766 876655444333322 1111
Q ss_pred eEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 446 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 446 ~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
.- ...-|.-|+++... +.||.-.........+..++...-.+..|++...|.+
T Consensus 964 hf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen 964 HF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred hh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence 11 11234455555444 6777421111222333333333235667777777654
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5.2e-09 Score=96.30 Aligned_cols=256 Identities=14% Similarity=0.168 Sum_probs=167.8
Q ss_pred CCcEEEEcCCCC--ce-EEEcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCC-CCcceeEEeccCCcCeEEE
Q 010669 244 DTNAVLFDRPSG--QI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSED-GNYDCKHTLKDHTAEVQAV 316 (504)
Q Consensus 244 dg~i~vwd~~~~--~~-~~~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l 316 (504)
+.-|++|++.+. +. ...+-.+.+.++-++|+|+++.|.++.. +|.|..|.++.. +.+..+........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999988732 22 1122346677899999999998888865 477888877753 3333333322223344889
Q ss_pred EEccCCCEEEEEeC-CCeEEEEECCC-CeEE---EEeecCCCCCC----CCCeEEEEECCCCCEEEEEeC-CCcEEEEEc
Q 010669 317 TVHATNKYFVTASL-DNTWCFYDLSS-GICL---TQVSDAGTDGR----PEGYTSAAFHPDGLILGTGTS-EALVKIWDV 386 (504)
Q Consensus 317 ~~~p~~~~l~s~s~-dg~i~iwd~~~-~~~~---~~~~~~~~~~~----~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~ 386 (504)
+++++|++++++.. .|.|.++-++. |... ..+...+...| ...+.+..+.|+++++++..- -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998875 57899998865 3222 12221111111 122788999999999888753 347999999
Q ss_pred CCCceeeee---eCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCC-c---ceeeeecC----CCCCCeeEEEECCC
Q 010669 387 KSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL-K---NFRSFESS----DSETPTNSVDFDHS 453 (504)
Q Consensus 387 ~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~-~---~~~~~~~~----~~~~~v~~i~~~~~ 453 (504)
..++....- .........|.|+|+|++....++= + |.+|..... . .++.+... ....+...|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 877542211 1234567899999999998887764 4 999988763 2 22222211 12456778999999
Q ss_pred CCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 454 g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
|+||+++... |.+|.++........+...+.+ .-.-..+.|.+.|.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~ 303 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE--GQFPRDFNINPSGR 303 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC--CcCCccceeCCCCC
Confidence 9999998543 9999987655555555555554 22356677766664
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=9.2e-10 Score=106.10 Aligned_cols=250 Identities=17% Similarity=0.203 Sum_probs=158.0
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-----eC-----CCcEEEEeC
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-----SA-----DKTVRVWQG 294 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----s~-----dg~i~iwd~ 294 (504)
++...+++++|++++.+. +..+.|++..++..+.+.... .+.++.|+|.|++|.+- .. .-.+++|++
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 367788999999888765 668999998888655444433 78999999999988753 12 235779998
Q ss_pred CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--CEE
Q 010669 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LIL 372 (504)
Q Consensus 295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--~~l 372 (504)
.++ .....+......-++..|++|..+.+- -..+.+++|++.+.+..... -|...++.+.++|.+ ..+
T Consensus 113 et~---~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~k------l~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 113 ETG---VQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHK------LSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred ccc---eehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeee------eeccceeeEEecCCCCCceE
Confidence 873 222222222222267888877654322 12356777777653322211 122334444444431 112
Q ss_pred EE-----EeCCCcE---------------------------------------------------------EEEEcCCCc
Q 010669 373 GT-----GTSEALV---------------------------------------------------------KIWDVKSQA 390 (504)
Q Consensus 373 ~~-----g~~dg~I---------------------------------------------------------~iwd~~~~~ 390 (504)
|+ ++.-+.| +++++....
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 21 1222233 344433112
Q ss_pred eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc----
Q 010669 391 NVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---- 463 (504)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---- 463 (504)
....+. ..++|.++.|+++|+-++++-.- . +.|||++ +..+..+. .++-+++-|+|.|++++.+|-+
T Consensus 263 ~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 263 VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCC
Confidence 222222 36899999999999877766433 3 9999987 44544443 4677889999999999988765
Q ss_pred -EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669 464 -IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ 501 (504)
Q Consensus 464 -i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~ 501 (504)
+.|||+ .+.+++..+..- .-+-++|+|+|+
T Consensus 337 ~mEvwDv----~n~K~i~~~~a~----~tt~~eW~PdGe 367 (566)
T KOG2315|consen 337 DMEVWDV----PNRKLIAKFKAA----NTTVFEWSPDGE 367 (566)
T ss_pred ceEEEec----cchhhccccccC----CceEEEEcCCCc
Confidence 999999 668888888653 457789999996
No 269
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.28 E-value=2.6e-12 Score=87.31 Aligned_cols=42 Identities=43% Similarity=0.724 Sum_probs=33.4
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCCCC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTG 42 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~ 42 (504)
+.|+||+.++++||.+.++||+|||+.|++||+.++ +||++|
T Consensus 12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred cCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 579999999999999999999999999999996555 499987
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1e-11 Score=118.68 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=145.3
Q ss_pred EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC----CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe
Q 010669 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 333 (504)
Q Consensus 258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 333 (504)
+..+.||...|..++-..+.+-+++++.|++|++|.++..+ ...|..+++.|..+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45677999999988777778889999999999999987543 234778889999999999999888888765 899
Q ss_pred EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeee-----CCCCCeEEEEE
Q 010669 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQANVAKFD-----GHVGAVTAISF 407 (504)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~dg~I~iwd~~~~~~~~~~~-----~~~~~i~~l~~ 407 (504)
|++||.--+..+..+......+....|.|+.- -+..++..| +...+|+++|.|...-...++ +.++.+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988877765553322222223333321 144555555 678899999999887655554 34567899999
Q ss_pred cCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 408 SENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 408 s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
.+.|++|+++-.+| |.+.|.|+|+.+..+.... .....++ .|+.+.|+....|
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpme--cdllqla-apsdq~L~~sald 938 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPME--CDLLQLA-APSDQALAQSALD 938 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCccc--chhhhhc-CchhHHHHhhccc
Confidence 99999999998888 9999999999887775432 1222222 3455555554444
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=1.4e-09 Score=98.74 Aligned_cols=199 Identities=16% Similarity=0.313 Sum_probs=144.5
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC----CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP----SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd 293 (504)
++..-..+++++.+.++...|++|-.+|++.-+.+. ....++.+..|...|..+.|+....++++.+.|..+. |.
T Consensus 63 I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~h 141 (404)
T KOG1409|consen 63 IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WH 141 (404)
T ss_pred hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EE
Confidence 344456789999999999999999999999988653 3455677778999999999998888999999997764 53
Q ss_pred C-CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669 294 G-SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGL 370 (504)
Q Consensus 294 ~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~ 370 (504)
. +.+.... -..+. ...+++.+.- .+.+.|...|.|.+-.+... ..+..+. +|...+.+++|.+...
T Consensus 142 c~e~~~~lg-~Y~~~---~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-----~h~~~~~~l~Wd~~~~ 210 (404)
T KOG1409|consen 142 CTESGNRLG-GYNFE---TPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFN-----GHTGEVTCLKWDPGQR 210 (404)
T ss_pred eeccCCccc-ceEee---ccCCCCceee--EEEEecccccceEEEEEeecCCceEEEEc-----CcccceEEEEEcCCCc
Confidence 3 2221100 01110 1111111211 15566666676666554433 3333333 7888999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669 371 ILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~ 428 (504)
+|++|..|..+.+||+.-.+ ....+.+|...|..+...+--+.|++++.|+ |.+||+.
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999996554 3456678999999998888888999999998 9999975
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=2.5e-10 Score=103.55 Aligned_cols=217 Identities=14% Similarity=0.277 Sum_probs=148.1
Q ss_pred ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--CcceeEEeccCC------------cCeEEEEEccCCC--EEEEE
Q 010669 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATNK--YFVTA 328 (504)
Q Consensus 265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~p~~~--~l~s~ 328 (504)
..-|.++.|...|.+|++|..+|.|.++.-.... .+.....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999654322 222344444453 3588899988664 78888
Q ss_pred eCCCeEEEEECCCCeEEE--------------------Eee-----------cCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 329 SLDNTWCFYDLSSGICLT--------------------QVS-----------DAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 329 s~dg~i~iwd~~~~~~~~--------------------~~~-----------~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
+.|.+|++|.+....... .+. ..-...|...|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999886432211 000 00124677789999999999988886 5
Q ss_pred CCcEEEEEcCCCce---eeeeeCCC-----CCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcc----eeeeecCC---
Q 010669 378 EALVKIWDVKSQAN---VAKFDGHV-----GAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN----FRSFESSD--- 440 (504)
Q Consensus 378 dg~I~iwd~~~~~~---~~~~~~~~-----~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~----~~~~~~~~--- 440 (504)
|=.|-+|++.-... +..++++. .-|++..|+|. ..+++-++..| |++-|+|.... .+.+..+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67899999864322 33334443 36889999994 45555555556 99999994321 11111111
Q ss_pred -------CCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC
Q 010669 441 -------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 441 -------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h 485 (504)
.-..|..+.|+++|+|+++-..- +++||++. ..+.+.+++.|
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nm---e~~pv~t~~vh 313 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNM---EAKPVETYPVH 313 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccc---cCCcceEEeeh
Confidence 02367889999999999998877 99999954 34455555555
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=2.9e-10 Score=116.88 Aligned_cols=181 Identities=11% Similarity=0.185 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC-----eEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 010669 276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE-----VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350 (504)
Q Consensus 276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-----v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (504)
+...++.++.++.+.+||.... .....+ .+... ..-+-++++.-++++|+.-+.|.+|+....+....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~---~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~--- 170 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNS---SVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR--- 170 (967)
T ss_pred hcceEEEEEcCceEEEEecccC---ceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce---
Confidence 4556888888889999998764 222222 22222 12233455666899999999999999873332222
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (504)
Q Consensus 351 ~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~ 428 (504)
..+|.+.+..+.|+-||.++++.++|.++|+|++.+.+... ..-+|...|..++|.|+ .+++++.|- .++|+..
T Consensus 171 --l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 171 --LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred --ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 33899999999999999999999999999999999987665 56679999999999998 899999997 9999765
Q ss_pred CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~ 469 (504)
+..+..+..|. ...++.++.++....+++++.| +++|++
T Consensus 247 -~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 247 -GTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred -cceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 34444666553 5679999999999999999999 999997
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.24 E-value=4.5e-10 Score=101.91 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=178.5
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEc-CCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFD-RPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~ 296 (504)
..+|.+.|++...-|..+-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|+.|-.+|++.-+.+..
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence 456777888888888888899999999999994 44555544443 3457789999999999999999999999887654
Q ss_pred C-CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 297 D-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 297 ~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
. ......+....|...|..+.|+-....+++.+.|..+.-.-.+.+..+..+... ..-+++.+.-. +...|
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~------~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE------TPASALQFDAL--YAFVG 171 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee------ccCCCCceeeE--EEEec
Confidence 3 112344555689999999999988999999999988776555555444333210 01111222111 55666
Q ss_pred eCCCcEEEEEc--CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 376 TSEALVKIWDV--KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 376 ~~dg~I~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
...|.|..-.+ ..-.++.++.+|.+.+++++|.+....|++|..|. |.+||+--.+... +....+...|..+..-+
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-YELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-eeeccchhhhhhhhhhh
Confidence 66776665544 34467889999999999999999999999999998 9999997554332 33333467788888777
Q ss_pred CCCEEEEEeCc--EEEEEeec
Q 010669 453 SGSYLAVASAD--IRVYQVAS 471 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~ 471 (504)
--+.+++++.| |-+|+++.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 78888999888 99999843
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=2.1e-08 Score=110.68 Aligned_cols=239 Identities=11% Similarity=0.179 Sum_probs=154.3
Q ss_pred EEEEeccC-CCEEEEEeCCCcEEEEcCCCCceEEEccc--C------------ccceeEEEEeeCCCEEEEEe-CCCcEE
Q 010669 227 VSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSG--H------------SKKVTSVKFVTEGDLFLTGS-ADKTVR 290 (504)
Q Consensus 227 ~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h------------~~~v~~l~~s~~~~~l~s~s-~dg~i~ 290 (504)
..++++++ ++++++-+.++.|.+||.. +..+..+.+ . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35678764 6677777788899999975 444433322 1 12357899998887665554 457899
Q ss_pred EEeCCCCCCcceeEEeccC-----------------CcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 010669 291 VWQGSEDGNYDCKHTLKDH-----------------TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAG 352 (504)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (504)
++|..++ .+.++.+- -..-.+++++| ++..+++.+.++.|++||..++.... +...+
T Consensus 650 ~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 650 EIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 9998663 23322110 01236789999 56666777788999999998875432 21110
Q ss_pred C----C------CCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeee-------------eCC--------CC
Q 010669 353 T----D------GRPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKF-------------DGH--------VG 400 (504)
Q Consensus 353 ~----~------~~~~~v~~~~~~pdg~-~l~~g~~dg~I~iwd~~~~~~~~~~-------------~~~--------~~ 400 (504)
. . ..-.....++++|+|. ++++-+.++.|++||+.++...... -.. -.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 0 0 0113456799999988 5555566799999999876432111 000 11
Q ss_pred CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-----------CCCCCeeEEEECCCCCEEEEEeCc--EEE
Q 010669 401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------DSETPTNSVDFDHSGSYLAVASAD--IRV 466 (504)
Q Consensus 401 ~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-----------~~~~~v~~i~~~~~g~~l~~~~~d--i~v 466 (504)
....++|+++|.++++-+.++ |++||..++......... ..-.....++++++|+++++-+.+ |++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 346899999998777777776 999999876544222110 011256789999999977776655 999
Q ss_pred EEeec
Q 010669 467 YQVAS 471 (504)
Q Consensus 467 w~~~~ 471 (504)
|++..
T Consensus 885 id~~~ 889 (1057)
T PLN02919 885 LDLNK 889 (1057)
T ss_pred EECCC
Confidence 99844
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=7e-09 Score=98.05 Aligned_cols=213 Identities=18% Similarity=0.196 Sum_probs=154.4
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCCceEEEcc-c--------Ccccee---EEE-Eee-CCCEEEEEeCCCcEEEEeCCCCC
Q 010669 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLS-G--------HSKKVT---SVK-FVT-EGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~--------h~~~v~---~l~-~s~-~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
.||+.++- +..|.|++||..+..... +. + ....+. -+. |++ +|++++..|. |...|.+...+
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~- 351 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG- 351 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC-
Confidence 46665554 356789999987654322 21 1 001111 111 333 6888887776 67777766543
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
-.+ . -+|.+.|.-..+..+++-++.|..|| .+-++|.++++...... .-+.|.++..+++|+.++++..
T Consensus 352 --~~i-q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 352 --YSI-Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------DLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred --eeE-E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC------CccceEEEEEcCCCcEEEEEcC
Confidence 222 2 36778899888888888999999999 89999999987655443 2356999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-----EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-----VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-----v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
...|.++|+.+++....-+...+-|+...|+|+++++|-+--+| |+++|+..++....-.. ...=.+-+|+|
T Consensus 422 r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~ 498 (668)
T COG4946 422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDP 498 (668)
T ss_pred ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCC
Confidence 99999999999987666566678899999999999999886653 89999998776554332 23345678999
Q ss_pred CCCEEEEEeC
Q 010669 453 SGSYLAVASA 462 (504)
Q Consensus 453 ~g~~l~~~~~ 462 (504)
+|++|..-+.
T Consensus 499 d~ryLYfLs~ 508 (668)
T COG4946 499 DGRYLYFLSA 508 (668)
T ss_pred CCcEEEEEec
Confidence 9999886654
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=1e-08 Score=97.87 Aligned_cols=259 Identities=15% Similarity=0.159 Sum_probs=175.8
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCC---------------cEEEEcCCCCceEEEcccCccc--ee-EEEEeeCCCEEEEE
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDT---------------NAVLFDRPSGQIVTTLSGHSKK--VT-SVKFVTEGDLFLTG 283 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg---------------~i~vwd~~~~~~~~~~~~h~~~--v~-~l~~s~~~~~l~s~ 283 (504)
..+.|..+.|+|.+++|.+-+..+ .+.+||..+|.++..+.+...+ .+ -+.|+-+.++++-.
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 346789999999999999976543 4999999999999999876665 55 67888888876544
Q ss_pred eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC--EEEE-----EeCCCeEEEEECCCCeEEEEeecCCCCCC
Q 010669 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVT-----ASLDNTWCFYDLSSGICLTQVSDAGTDGR 356 (504)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 356 (504)
. ...+.|+++...-.......++ ...|....|+|.++ .|+. .+.++.+++|.+..+..+......
T Consensus 150 v-~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf----- 221 (561)
T COG5354 150 V-GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF----- 221 (561)
T ss_pred c-cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-----
Confidence 2 3469999972211111222222 35688889999644 3343 356788999999877665544321
Q ss_pred CCCeEEEEECCCCCEEEEEe-----------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe--CCc-E
Q 010669 357 PEGYTSAAFHPDGLILGTGT-----------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-V 422 (504)
Q Consensus 357 ~~~v~~~~~~pdg~~l~~g~-----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~--~d~-v 422 (504)
...-..+.|++.|.++++-- ....++|++++... +.....-.++|...+|.|.+..+++.+ ... +
T Consensus 222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~ 300 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASV 300 (561)
T ss_pred eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccce
Confidence 12235688999888776521 12457888886433 222224578999999999887776665 334 9
Q ss_pred EEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497 (504)
Q Consensus 423 ~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~ 497 (504)
.++|++.. ....+ + ...-+.+.|+|.+++++.++-+ +-+|+. .....++..+.+. .-+-++|+
T Consensus 301 s~~~lr~N-l~~~~--P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~---~~rf~~~~~~~~~----n~s~~~ws 368 (561)
T COG5354 301 SVFDLRGN-LRFYF--P--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP---AGRFKVAGAFNGL----NTSYCDWS 368 (561)
T ss_pred eecccccc-eEEec--C--CcccccccccCcccEEEEecCCccccceEEecc---CCceEEEEEeecC----CceEeecc
Confidence 99999865 32222 2 3455678899999999998766 888986 3456666677653 34556778
Q ss_pred ecCc
Q 010669 498 VLGQ 501 (504)
Q Consensus 498 ~~g~ 501 (504)
|+||
T Consensus 369 pd~q 372 (561)
T COG5354 369 PDGQ 372 (561)
T ss_pred CCce
Confidence 8876
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4.5e-09 Score=101.14 Aligned_cols=244 Identities=13% Similarity=0.245 Sum_probs=148.0
Q ss_pred cccCCCCCeEEEEeccCCCEEEEEeC-----------CCcEEEEcCCCCceEEEcccC--ccce-eEEEEeeCCCEEEEE
Q 010669 218 LHKTSKPGIVSLDIHYSKDVIATGGV-----------DTNAVLFDRPSGQIVTTLSGH--SKKV-TSVKFVTEGDLFLTG 283 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h--~~~v-~~l~~s~~~~~l~s~ 283 (504)
+++.....|.-++|||..+||+|-+. ...+.|||+.+|...+.+... ...+ .-..||.|+++++--
T Consensus 244 ~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 244 IQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred HHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe
Confidence 44445578999999999999999753 246899999999988877642 2223 346899999998876
Q ss_pred eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC----------------CCe---EEEEECCC---
Q 010669 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----------------DNT---WCFYDLSS--- 341 (504)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~----------------dg~---i~iwd~~~--- 341 (504)
..| +|.||+...- ..+..-.-.-..|....|+|.++.|+--+. ... ..++++..
T Consensus 324 ~~~-sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckL 399 (698)
T KOG2314|consen 324 TGN-SISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKL 399 (698)
T ss_pred ccc-eEEEEecCce---eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEE
Confidence 664 6888875431 111110112234555666665554432210 011 11222111
Q ss_pred -----CeEEE---------------------EeecCC----CCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCC
Q 010669 342 -----GICLT---------------------QVSDAG----TDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKS 388 (504)
Q Consensus 342 -----~~~~~---------------------~~~~~~----~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd~~~ 388 (504)
|..+. .+.... .-.-...|...+|-|.|+.+++-+. ..++.+|-+.+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 11000 000000 0012345778999999988876543 35788998873
Q ss_pred -C---ceeeeeeCCCCCeEEEEEcCCCcEEEEEeC---Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE
Q 010669 389 -Q---ANVAKFDGHVGAVTAISFSENGYYLATAAH---DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 460 (504)
Q Consensus 389 -~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~---d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~ 460 (504)
. +.+..+.. ...+.+.|+|.|++++.+.- .| +.++|+....... ..... ....+.+.|+|.|+|++++
T Consensus 480 ~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-~~~~e-h~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 480 NIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD-TASPE-HFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred CCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh-ccCcc-ccccccceECCCCCEEEEe
Confidence 2 23444432 45788999999999988754 35 9999987432222 11122 2457789999999999998
Q ss_pred eCc--------EEEEEe
Q 010669 461 SAD--------IRVYQV 469 (504)
Q Consensus 461 ~~d--------i~vw~~ 469 (504)
+.- -++|++
T Consensus 556 ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 556 SSSWRHKVDNGYRIFTF 572 (698)
T ss_pred eehhhhccccceEEEEe
Confidence 754 566665
No 279
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-09 Score=102.88 Aligned_cols=251 Identities=15% Similarity=0.157 Sum_probs=176.8
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC---CceEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSED 297 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~ 297 (504)
|++.|+.+... -.+++.+++.||.++.|.-.. -+.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 56667766544 468999999999999997543 2445566788999999999999999999777 999999998764
Q ss_pred CCcceeEEeccCCcCeEEEEEccCC-C-EEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATN-K-YFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~-~-~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~ 374 (504)
..... ..+..-.+.+..+ .++.. . .++ +.-.+|.+.++|-....+...+. ..-|..+|.++.+.+-+..+.+
T Consensus 87 Dminm-iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---kklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 87 DMINM-IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---KKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred chhhh-cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---cccccCceEEEEeeccccceee
Confidence 21111 1111122222222 22211 1 333 33457899999987665433333 2367789999999999999999
Q ss_pred EeCCCcEEEEEcCC------Ccee---------eeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669 375 GTSEALVKIWDVKS------QANV---------AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 375 g~~dg~I~iwd~~~------~~~~---------~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~ 438 (504)
....|.|..|.... .+.. ..+.......+++.|+|+|..+.+-+.|. |+++++++++.++.+..
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 99999999998762 1111 11222345788999999999999999887 99999999887665532
Q ss_pred CCC-------------------------------CCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEc
Q 010669 439 SDS-------------------------------ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 482 (504)
Q Consensus 439 ~~~-------------------------------~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~ 482 (504)
... ...-+.+.|+.+|++|+.|+-- |+|.++ .+..+.+.+
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~----~tn~v~ri~ 313 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINL----DTNTVVRIL 313 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEe----ecCeEEEEe
Confidence 110 1134568899999999999887 999999 556666666
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=123.42 Aligned_cols=196 Identities=20% Similarity=0.343 Sum_probs=148.9
Q ss_pred cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 010669 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342 (504)
Q Consensus 263 ~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~ 342 (504)
.+-..|.++.-+|...+.++|+.||.|++|....+....+.++. +. ..|+.+.|+..|+.+..+..||.+.+|.+. .
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 35566788888888889999999999999998776433333332 33 889999999999999999999999999987 2
Q ss_pred eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA 418 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~ 418 (504)
+...... .|....+.+.|-. ..+++++ .++.+.+||.--. .....-..|.+.++++++.|....|++|+
T Consensus 2283 k~~~s~q-----chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2283 KPYTSWQ-----CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cceeccc-----cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 2222222 5566677777765 4555543 5688999997432 22222267999999999999999999999
Q ss_pred CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669 419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 419 ~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~ 484 (504)
.+| |++||++..+..+.+.. ++ ...++++|+.. ++||++ .....+.+|+.
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~----s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRL----SEFGLLHTFPS 2408 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEc----cccchhhcCch
Confidence 999 99999998887777754 45 56788888776 999999 55677777754
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=5.5e-09 Score=91.91 Aligned_cols=193 Identities=9% Similarity=0.025 Sum_probs=137.5
Q ss_pred EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEE
Q 010669 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 316 (504)
Q Consensus 237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 316 (504)
-+..++.|.++++.++..+.....+.-..-.+.++.++++++++++.+....|..|.+...+.+..........+.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 34556677777777765443222221111237899999999999999999999999998865544333444445556788
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeee
Q 010669 317 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTSEALVKIWDVKSQANVAK 394 (504)
Q Consensus 317 ~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--~~l~~g~~dg~I~iwd~~~~~~~~~ 394 (504)
.|+.....||+++.||++.|||++...............|.+.+..+.|++.| .+|+..-.-+.+.+.|+|+++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 89999999999999999999999986555444433344688999999999855 3555555567899999999875544
Q ss_pred ee-------CCCC-CeEEEEEcCCCcEEEEEeCCcEEEEEcCC
Q 010669 395 FD-------GHVG-AVTAISFSENGYYLATAAHDGVKLWDLRK 429 (504)
Q Consensus 395 ~~-------~~~~-~i~~l~~s~~g~~l~s~~~d~v~vwd~~~ 429 (504)
+. .|.. .|..-.|+.++.-+.+.+++.+.-|++.+
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence 32 2333 37888888888777777777666676654
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=6.5e-08 Score=104.86 Aligned_cols=265 Identities=11% Similarity=0.153 Sum_probs=168.1
Q ss_pred CCeEEEEeccCCCEE--EEEeCCC--cEEEEcCCCC---ceEEEcc-----cCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669 224 PGIVSLDIHYSKDVI--ATGGVDT--NAVLFDRPSG---QIVTTLS-----GHSKKVTSVKFVTEGDLFLTGSADKTVRV 291 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l--~sg~~dg--~i~vwd~~~~---~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~s~dg~i~i 291 (504)
..+...+|.+..+.+ +++.... .|.+...... +.+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356777777766533 3333322 2333332222 2334443 24567999999999999999999999999
Q ss_pred E----eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE----------------------
Q 010669 292 W----QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL---------------------- 345 (504)
Q Consensus 292 w----d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~---------------------- 345 (504)
. +.... ..+.+. .-...|.+++|+||+..++..+.++++.+.+-. ...+
T Consensus 102 ~~~~~~~~~~-~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVG---SVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEccCCCCCc-eeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCc
Confidence 9 55442 223333 335679999999999999999999988775421 1111
Q ss_pred --EEeecCCCC-------------------CCCCCeEEEEECCCCCEEEEEeC---C---CcEEEEEcCCCceeeeeeCC
Q 010669 346 --TQVSDAGTD-------------------GRPEGYTSAAFHPDGLILGTGTS---E---ALVKIWDVKSQANVAKFDGH 398 (504)
Q Consensus 346 --~~~~~~~~~-------------------~~~~~v~~~~~~pdg~~l~~g~~---d---g~I~iwd~~~~~~~~~~~~~ 398 (504)
.++.+...+ .....-..++|-.||.+||+.+- . ..|+||+- .|....+-..-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccC
Confidence 011000000 02235568899999999999874 2 47999995 46554444433
Q ss_pred CCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecC--CCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669 399 VGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS 471 (504)
Q Consensus 399 ~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~--~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~ 471 (504)
.+--.+++|.|.|.++|+.... . |.+|.- +|-....|... .....|..+.|++|+..||+.-.| |.+|-...
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N 334 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN 334 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC
Confidence 4445678999999999988652 2 788874 34333334432 235679999999999999999888 99998733
Q ss_pred cCccceeEEEccCCCCCCceeEEEEee
Q 010669 472 VKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 472 ~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
..|-.-+.+.-. ....+..+.|.|
T Consensus 335 --YHWYLKqei~~~-~~~~~~~~~Wdp 358 (928)
T PF04762_consen 335 --YHWYLKQEIRFS-SSESVNFVKWDP 358 (928)
T ss_pred --CEEEEEEEEEcc-CCCCCCceEECC
Confidence 456665555432 122333355554
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3e-08 Score=98.83 Aligned_cols=190 Identities=10% Similarity=0.031 Sum_probs=123.2
Q ss_pred CeEEEEeccCCCE-EEEEeC---CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEE-EeCC--CcEEEEeCCCC
Q 010669 225 GIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSAD--KTVRVWQGSED 297 (504)
Q Consensus 225 ~I~~~~~s~~~~~-l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~s~d--g~i~iwd~~~~ 297 (504)
.+..-.|+|||+. ++..+. +..|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 554433 3569999998886544333 4455667889999986653 4434 45777777653
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~ 374 (504)
. ...+..+........|+|||+.|+..+. .+ .|.++|+.++........ +. ....|+|||+.++.
T Consensus 268 ---~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g~----~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 268 ---T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----GK----NNSSVSTYKNYIVY 335 (419)
T ss_pred ---c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----CC----cCceECCCCCEEEE
Confidence 2 2333333333445689999997776664 33 688889988766443321 11 12489999998877
Q ss_pred EeCC---------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCC
Q 010669 375 GTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRK 429 (504)
Q Consensus 375 g~~d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~ 429 (504)
.... ..|.+.|+.++... .+... .......|+|||+.|+..+.. . +.+.++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 6543 36888898777543 33322 233458899999988776544 2 67777754
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=1.7e-07 Score=89.68 Aligned_cols=205 Identities=14% Similarity=0.173 Sum_probs=137.6
Q ss_pred eccCCCEEEEEeC----------CCcEEEEcCCCCceEEEcccCcc-------ceeEEEEeeCCCEEEEEe-C-CCcEEE
Q 010669 231 IHYSKDVIATGGV----------DTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTGS-A-DKTVRV 291 (504)
Q Consensus 231 ~s~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~s-~-dg~i~i 291 (504)
++|||+.|+++.. +..|.+||..+.+.+..+..... ....++++|||++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999997766654 78999999999999988874222 234788999999988776 3 688999
Q ss_pred EeCCCCCCcc------eeEEecc-------C--C-------------cCeEEE--------------EEcc-CCCEEEEE
Q 010669 292 WQGSEDGNYD------CKHTLKD-------H--T-------------AEVQAV--------------TVHA-TNKYFVTA 328 (504)
Q Consensus 292 wd~~~~~~~~------~~~~~~~-------h--~-------------~~v~~l--------------~~~p-~~~~l~s~ 328 (504)
.|+.+..... |...+.. | . ..+... .|.+ +|.+++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9977642110 0000000 0 0 001111 1223 66666665
Q ss_pred eCCCeEEEEECCCCe-----EEEEeecC--CCCCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCce
Q 010669 329 SLDNTWCFYDLSSGI-----CLTQVSDA--GTDGRPEGYTSAAFHPDGLILGTGT----------SEALVKIWDVKSQAN 391 (504)
Q Consensus 329 s~dg~i~iwd~~~~~-----~~~~~~~~--~~~~~~~~v~~~~~~pdg~~l~~g~----------~dg~I~iwd~~~~~~ 391 (504)
.. |.|.+.|+.... ....+... ...-....+.-++++++++.+++.. ..+.|.++|..+++.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 55 999999964432 22222111 0112344556699999999888742 225799999999999
Q ss_pred eeeeeCCCCCeEEEEEcCCCc-EEEEEeC-Cc-EEEEEcCCCcceeeee
Q 010669 392 VAKFDGHVGAVTAISFSENGY-YLATAAH-DG-VKLWDLRKLKNFRSFE 437 (504)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~g~-~l~s~~~-d~-v~vwd~~~~~~~~~~~ 437 (504)
+..+.. ...+..++|+|||+ +|++.+. ++ |.++|..+++.+.++.
T Consensus 292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 988873 34789999999999 7777764 45 9999999999988883
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=1.6e-08 Score=96.69 Aligned_cols=233 Identities=14% Similarity=0.157 Sum_probs=157.3
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC---------------
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--------------- 287 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg--------------- 287 (504)
.-++..++|||.|.+|++....| |.+|.-.....+..+. | ..|..+.|+|.+++|.+-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 34688899999999999887665 8899877766555555 3 3489999999999999875443
Q ss_pred cEEEEeCCCCCCcceeEEeccCCcC--eE-EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669 288 TVRVWQGSEDGNYDCKHTLKDHTAE--VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 364 (504)
Q Consensus 288 ~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 364 (504)
.+.+||+.++ ..+..+.....+ .+ -+.|+-+.++++-. -...++|+++ ++.... ... ..-....+....
T Consensus 109 ~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~-~p~--~~lr~~gi~dFs 180 (561)
T COG5354 109 NVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEE-HPF--KNLRPVGILDFS 180 (561)
T ss_pred ceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcccc-Cch--hhccccceeeEE
Confidence 4999999886 566666555444 44 67888888876654 3457899997 333221 110 111235788999
Q ss_pred ECCCC--CEEEE-----EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe------------CCcEEEE
Q 010669 365 FHPDG--LILGT-----GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA------------HDGVKLW 425 (504)
Q Consensus 365 ~~pdg--~~l~~-----g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~------------~d~v~vw 425 (504)
|+|.| ..|+. ++..+.+++|.+..++.+.+-.-....=..+.|.+.|.+|+.-. +.+++++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 99953 34443 45678999999987665544322222334688888888776531 1238888
Q ss_pred EcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe-Cc---EEEEEe
Q 010669 426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS-AD---IRVYQV 469 (504)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~-~d---i~vw~~ 469 (504)
+++...+.... +..++|..++|.|.++.+++.+ .. +.++++
T Consensus 261 ~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 261 RITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred eecccccceec---cccccceeeeecccCCceeEEecccccceeeccc
Confidence 88743332222 2267999999999887777665 33 777876
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.11 E-value=5e-07 Score=83.98 Aligned_cols=218 Identities=15% Similarity=0.157 Sum_probs=144.6
Q ss_pred EEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEe-eCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669 228 SLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 228 ~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (504)
++.|.+ ++.++++--..+.|+.|+..++.... +.... ...+++. +++ .|+.+..+ .+.++|..++ ....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCC-cEEEEee
Confidence 567887 67777777788999999998776533 22122 6777887 565 45555554 4566688774 2233333
Q ss_pred ec--c-CCcCeEEEEEccCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-
Q 010669 306 LK--D-HTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG- 373 (504)
Q Consensus 306 ~~--~-h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~- 373 (504)
.. . .....+.+++.|+|++.++.... |.|..++.. ++....... -...+.++|+|+++.|+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~------~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG------LGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE------ESSEEEEEEETTSSEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC------cccccceEECCcchheee
Confidence 31 1 34568899999999987776643 568888887 554433321 23578999999998765
Q ss_pred EEeCCCcEEEEEcCCCce-------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCe
Q 010669 374 TGTSEALVKIWDVKSQAN-------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v 445 (504)
+-+..+.|..|++..... ...+....+..-.+++..+|++.++....+ |.++|.. ++.+..+... ...+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~ 227 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRP 227 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCE
Confidence 556778899999864321 112222223478899999998877766666 9999987 8888888876 3489
Q ss_pred eEEEE-CCCCCEEEEEe
Q 010669 446 NSVDF-DHSGSYLAVAS 461 (504)
Q Consensus 446 ~~i~~-~~~g~~l~~~~ 461 (504)
++++| -++.+.|++.+
T Consensus 228 t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEESTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 99999 46767666554
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=1.8e-09 Score=100.18 Aligned_cols=215 Identities=13% Similarity=0.168 Sum_probs=135.4
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCc----eEEEcccCccceeEEEEeeCCCEEEE---EeCCCcEEEEeCCCCC
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEGDLFLT---GSADKTVRVWQGSEDG 298 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s---~s~dg~i~iwd~~~~~ 298 (504)
...+..+++++++|++..+....++++.... ++..+. -...-+++.|..+...... ++....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 3455677888899988888887777655432 222222 1223345555554444443 34455566666554
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.+...+-+|-+.+.+++|+||+++|+++..|..|++-.......+..+. -||...|..++.-++. .|++|+.|
T Consensus 142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----lGH~eFVS~isl~~~~-~LlS~sGD 214 (390)
T KOG3914|consen 142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----LGHKEFVSTISLTDNY-LLLSGSGD 214 (390)
T ss_pred --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----cccHhheeeeeeccCc-eeeecCCC
Confidence 2333455899999999999999999999999999997766554444442 3788899999998754 48999999
Q ss_pred CcEEEEEcCCCceeeeeeCCC--CCeE----------EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCe
Q 010669 379 ALVKIWDVKSQANVAKFDGHV--GAVT----------AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~~--~~i~----------~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v 445 (504)
++|++||+++++.+..+.-.. .+|. .+.|......++..+++. |.++.....+....+... ...+
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~v~l~~--~~qv 292 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSLVPLVS--EVQV 292 (390)
T ss_pred CcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCceeEEEEe--cccc
Confidence 999999999999887664211 1111 122222223333334343 777776655443333222 3346
Q ss_pred eEEEECC
Q 010669 446 NSVDFDH 452 (504)
Q Consensus 446 ~~i~~~~ 452 (504)
+++++-.
T Consensus 293 ~d~a~~e 299 (390)
T KOG3914|consen 293 WDLALLE 299 (390)
T ss_pred eeeeeee
Confidence 6776644
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=8.5e-10 Score=109.28 Aligned_cols=259 Identities=15% Similarity=0.226 Sum_probs=172.3
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-ceEEEcccCc--cceeEEEEeeCCC---EEEEEeCCCcEEEEeCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHS--KKVTSVKFVTEGD---LFLTGSADKTVRVWQGSE 296 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~--~~v~~l~~s~~~~---~l~s~s~dg~i~iwd~~~ 296 (504)
..++.++.++|.|+-++.++.-| +.+.|+... ...+-+. |. -.|-.+.|++... ++++.+.- .-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhc
Confidence 45788999999999999998887 556676543 3322222 32 3467788887433 45555544 456898876
Q ss_pred CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEE
Q 010669 297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGT 374 (504)
Q Consensus 297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~ 374 (504)
.........+.+|+..|+++.|+|.. ..+++++.|-.+..||+++......... .....-+.++|+. +++.+|
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~asqVkwnyk~p~vla- 175 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAASQVKWNYKDPNVLA- 175 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccCceeeecccCcchhh-
Confidence 54445556677999999999999865 5889999999999999998654433221 2234567899998 555554
Q ss_pred EeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669 375 GTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 375 g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
.+..+.|++||++.| .++..+++|...|+.+.|+.- -..+.+++.|+ |+.||..+........... +.+++.-.+-
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~ 254 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYL 254 (1081)
T ss_pred hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcceecccc
Confidence 456678999999876 578889999999999999763 23566777777 9999998765433222221 4667777777
Q ss_pred CCCC--EEE-EEeCc-EEEEEeeccC------ccceeEEEccCCCCCCcee
Q 010669 452 HSGS--YLA-VASAD-IRVYQVASVK------ADWNCIKTFPDLSGTGAAS 492 (504)
Q Consensus 452 ~~g~--~l~-~~~~d-i~vw~~~~~~------~~~~~i~~~~~h~~~~~v~ 492 (504)
|-|. ++. ..|.+ +.+++..... ...+.+.+|.|| .+.|.
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~ 303 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVL 303 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHH
Confidence 7543 222 11222 4444332211 234678899998 55543
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=7e-09 Score=104.23 Aligned_cols=184 Identities=16% Similarity=0.213 Sum_probs=135.0
Q ss_pred ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (504)
Q Consensus 265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (504)
...+.|++++ +++|+-|..+|.|++++.... . .+...|+.. ..+|.++++||.||+|.|..+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3557777774 678999999999999987652 2 333455443 55899999999999999999988877
Q ss_pred EEEeecCCCCCCCCCeEEEEECCC-----CCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669 345 LTQVSDAGTDGRPEGYTSAAFHPD-----GLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATA 417 (504)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~pd-----g~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~ 417 (504)
...+. ...++.+++++|+ .+.+++|+..| +.++.-+-. +.-..+....|+|.++.| .|.++|-+
T Consensus 106 ~~~~d------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa 176 (846)
T KOG2066|consen 106 ITQYD------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA 176 (846)
T ss_pred ceeEe------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence 66654 2367999999997 56899999988 777653211 111134456789999999 78999999
Q ss_pred eCCcEEEEEcCCCcceeeeecCCC----CCCeeEEEECCCCCEEEEEeCcEEEEEee
Q 010669 418 AHDGVKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASADIRVYQVA 470 (504)
Q Consensus 418 ~~d~v~vwd~~~~~~~~~~~~~~~----~~~v~~i~~~~~g~~l~~~~~di~vw~~~ 470 (504)
++.||+|||+.+.+.+..+..+.. ......+.|.++.+.++.-+..|+|..+.
T Consensus 177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 999999999998887766655421 22345688887765555444449999885
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=2.1e-07 Score=100.97 Aligned_cols=236 Identities=14% Similarity=0.221 Sum_probs=158.1
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEE----cCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLF----DRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vw----d~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
..+.|.++.|-++...++.+..+|.|.++ +..+. +.+..+ ...|.+++||||+..|+....+|++.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 35679999999999999999999999999 54433 334443 4679999999999999999989988876411
Q ss_pred C------------CCC-------------------cce--------------eEEeccCCcCeEEEEEccCCCEEEEEeC
Q 010669 296 E------------DGN-------------------YDC--------------KHTLKDHTAEVQAVTVHATNKYFVTASL 330 (504)
Q Consensus 296 ~------------~~~-------------------~~~--------------~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 330 (504)
- .+. .+. ...+. +.+.-..|+|-.||.+|++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 0 000 000 00111 3335567899999999999875
Q ss_pred ---C---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeee----C
Q 010669 331 ---D---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFD----G 397 (504)
Q Consensus 331 ---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd~~~~~~~~~~~----~ 397 (504)
. ..+++|+-+ |.....-. .-.+--.+++|-|.|+++|+... ...|.+|. |+|-.-..|. .
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 3 479999976 54433332 11223457899999999998764 34566666 4554333332 3
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee--eeecCCCCCCeeEEEECCCC-CEEEEEeC-c-EEEEEe
Q 010669 398 HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESSDSETPTNSVDFDHSG-SYLAVASA-D-IRVYQV 469 (504)
Q Consensus 398 ~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~--~~~~~~~~~~v~~i~~~~~g-~~l~~~~~-d-i~vw~~ 469 (504)
....|..+.|++|+..|+....+.|.+|-..+..-.. .+.... ...+..+.|+|.. ..|.+.+. + +..+++
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 4568999999999999999888889999988765322 233222 2345559999954 33555554 3 544443
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=6.7e-08 Score=106.69 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=134.1
Q ss_pred eEEEEeccCCCEEEEEe-CCCcEEEEcCCCCceEEEcccC-----------------ccceeEEEEee-CCCEEEEEeCC
Q 010669 226 IVSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTTLSGH-----------------SKKVTSVKFVT-EGDLFLTGSAD 286 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h-----------------~~~v~~l~~s~-~~~~l~s~s~d 286 (504)
-..++++++++.|+++. .++.|+++|..++. +.++.+- -...+.++|+| ++.++++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 46788888887655544 45678989987654 3333210 11246899999 56667777788
Q ss_pred CcEEEEeCCCCCCcceeEEecc---------C------CcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeec
Q 010669 287 KTVRVWQGSEDGNYDCKHTLKD---------H------TAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSD 350 (504)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~---------h------~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (504)
+.|++||..++. +..+.+ + -.....|+++|+++.| ++-+.++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 705 HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 999999987631 111111 1 1235679999999854 4555678999999987653221100
Q ss_pred C----------C-CC-----CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-------------CCCCC
Q 010669 351 A----------G-TD-----GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-------------GHVGA 401 (504)
Q Consensus 351 ~----------~-~~-----~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-------------~~~~~ 401 (504)
. + .. ..-.....++++++|+++++-..++.|++||..++....... +.-..
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 0 0 00 011234689999999999999999999999998765443221 11125
Q ss_pred eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669 402 VTAISFSENGYYLATAAHDG-VKLWDLRKLKN 432 (504)
Q Consensus 402 i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~ 432 (504)
...|+++++|+++++-+.++ |++||+.+++.
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 77899999999877777777 99999988764
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=5.6e-07 Score=83.16 Aligned_cols=232 Identities=17% Similarity=0.242 Sum_probs=163.6
Q ss_pred EEEEecc-CCCEEEEEeCCCc-EEEEcCCCCceEEEcccCccce--eEEEEeeCCCEEEEEe-----CCCcEEEEeCCCC
Q 010669 227 VSLDIHY-SKDVIATGGVDTN-AVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGS-----ADKTVRVWQGSED 297 (504)
Q Consensus 227 ~~~~~s~-~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~s-----~dg~i~iwd~~~~ 297 (504)
..++.+| .+..++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.- ..|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence 4678888 4567777777665 6789999998887765433322 2468999999999863 458999999983
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEe------------------CCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (504)
.+..+..+..|.-.-..+.+.|+|+.|+++- .+..+.+.|..+|+.+.+.... ...|...
T Consensus 87 -~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lS 164 (305)
T PF07433_consen 87 -GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLS 164 (305)
T ss_pred -CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccc
Confidence 3577778887777778899999998877762 1335666778888877775532 1346678
Q ss_pred eEEEEECCCCCEEEEEeCCCc-------EEEEEcCCCceeeeee-------CCCCCeEEEEEcCCCcEEEEEeCCc--EE
Q 010669 360 YTSAAFHPDGLILGTGTSEAL-------VKIWDVKSQANVAKFD-------GHVGAVTAISFSENGYYLATAAHDG--VK 423 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~-------I~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~s~~~d~--v~ 423 (504)
+..+++.++|..++..-..|. |-+++. +..+..+. ...+.+-+|+++++|.++++.+-.+ +.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 999999999987777654442 334432 33222222 2346899999999999888877764 99
Q ss_pred EEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 424 vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
+||..++..+...... .+..++-.+++ ++++.+.. .++.+
T Consensus 243 ~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~G-~~~~~ 282 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQG-QLIRL 282 (305)
T ss_pred EEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCCc-cEEEc
Confidence 9999999988777654 46778777777 66655544 34444
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=4.5e-09 Score=97.63 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=110.5
Q ss_pred eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC-cceeEEeccCCcCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCe
Q 010669 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGI 343 (504)
Q Consensus 268 v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~ 343 (504)
...+..++.+++++.+..+....+++...... .++..... -...-+++.|..+......+.. ...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34445566777777777777766666655322 22222221 2223344455444454444444 4455555555444
Q ss_pred EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-eCCCCCeEEEEEcCCCcEEEEEeCCc-
Q 010669 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG- 421 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~- 421 (504)
+...+ +|-+.++.++|+||+++++++..|..|+|-.....-.+..| -||...|..++.-++ +.|++|+.|+
T Consensus 144 ~~~~l------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEPIL------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cchhh------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 33333 78889999999999999999999999999877666556555 479999999999855 5588888887
Q ss_pred EEEEEcCCCcceeeeec
Q 010669 422 VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 422 v~vwd~~~~~~~~~~~~ 438 (504)
|++||+++++.+.++..
T Consensus 217 lr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEEecccCCcccccch
Confidence 99999999998876654
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5e-07 Score=90.12 Aligned_cols=206 Identities=11% Similarity=0.037 Sum_probs=124.9
Q ss_pred CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeC---CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669 245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320 (504)
Q Consensus 245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 320 (504)
..|.+-|..... .+.+... +.+..-.|+|||+. ++..+. +..|.++|+.++. . ..+....+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---~-~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---K-EKIASSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---E-EEEecCCCcEEeeEECC
Confidence 345555554332 2333323 36788999999984 554443 3468888887642 2 22223445566788999
Q ss_pred CCCEEEEE-eCC--CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeee
Q 010669 321 TNKYFVTA-SLD--NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK 394 (504)
Q Consensus 321 ~~~~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~ 394 (504)
||+.++.. +.+ ..|.++|+.++.... +.. +........|+|||+.|+..+. .| .|.++|+.+++....
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~-----~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN-----YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEEE-ccc-----CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 99876644 333 468888988876433 321 1112334579999987776653 33 688888877765332
Q ss_pred eeCCCCCeEEEEEcCCCcEEEEEeCC---------c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-
Q 010669 395 FDGHVGAVTAISFSENGYYLATAAHD---------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD- 463 (504)
Q Consensus 395 ~~~~~~~i~~l~~s~~g~~l~s~~~d---------~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d- 463 (504)
... +. ....|+|+|.+|+..+.. . |.+.|+.++.. ..+... .......|+|||+.|+..+..
T Consensus 317 t~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~---~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 317 VFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN---GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred ccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC---CCcCCeEECCCCCEEEEEEccC
Confidence 221 11 124899999988776532 3 78888877654 333322 123358899999988877654
Q ss_pred --EEEEEe
Q 010669 464 --IRVYQV 469 (504)
Q Consensus 464 --i~vw~~ 469 (504)
-.+|-+
T Consensus 390 ~~~~L~~~ 397 (419)
T PRK04043 390 NQSALGII 397 (419)
T ss_pred CcEEEEEE
Confidence 344444
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=8.5e-09 Score=92.49 Aligned_cols=217 Identities=18% Similarity=0.318 Sum_probs=144.0
Q ss_pred ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--CcceeEEeccCC------------cCeEEEEEccCC--CEEEEE
Q 010669 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATN--KYFVTA 328 (504)
Q Consensus 265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~p~~--~~l~s~ 328 (504)
...|+++.|...|.+|++|...|.|.+|.-.... .++....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999754421 122333455554 347788887544 478888
Q ss_pred eCCCeEEEEECCCCeEEEE----------------------e--------------ec--CCCCCCCCCeEEEEECCCCC
Q 010669 329 SLDNTWCFYDLSSGICLTQ----------------------V--------------SD--AGTDGRPEGYTSAAFHPDGL 370 (504)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~----------------------~--------------~~--~~~~~~~~~v~~~~~~pdg~ 370 (504)
+.|.+|++|.+........ + .. .....|...+.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998854311000 0 00 01135666788999999988
Q ss_pred EEEEEeCCCcEEEEEcCCCc---eeeeeeCCC-----CCeEEEEEcCC--CcEEEEEeCCcEEEEEcCCCcc------ee
Q 010669 371 ILGTGTSEALVKIWDVKSQA---NVAKFDGHV-----GAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKN------FR 434 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~--g~~l~s~~~d~v~vwd~~~~~~------~~ 434 (504)
.++++ .|=.|.+|++.-.. .+..+++|. .-|++..|+|. ..++.+.+.+.|++-|+|.... +.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 88775 56789999986433 233445554 36889999994 3344444444499999984321 11
Q ss_pred --eeecCC------CCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC
Q 010669 435 --SFESSD------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 435 --~~~~~~------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h 485 (504)
.+.... ....|..+.|+++|+|+++-+.- ++|||++. ...++++++-|
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm---~k~pikTi~~h 321 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM---AKNPIKTIPMH 321 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc---ccCCceeechH
Confidence 111111 13467889999999999998887 99999954 34566666554
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=2.6e-06 Score=79.20 Aligned_cols=211 Identities=14% Similarity=0.102 Sum_probs=134.0
Q ss_pred EEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 010669 270 SVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQ 347 (504)
Q Consensus 270 ~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (504)
+..|.+ ++.++++--..+.|..|+..++ ....+... . ...+.+. ++ ..++.+..++ +.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~~~~~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEVIDLP-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEESS-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEEEecC-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEE
Confidence 567887 6777777778899999998774 22222222 2 7778887 55 5555555544 55569999866554
Q ss_pred eecCCCCCCCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (504)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d--------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~ 419 (504)
.............+.+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+.+..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 4431111144678899999999987776543 567777776 44333333 3456889999999998876655
Q ss_pred C-c-EEEEEcCCCcc----eeee-ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCc
Q 010669 420 D-G-VKLWDLRKLKN----FRSF-ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGA 490 (504)
Q Consensus 420 d-~-v~vwd~~~~~~----~~~~-~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~ 490 (504)
. + |..|++..... ...+ .........-.++++.+|++.++.... |.+++ ..++.+..+..- ...
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~-----p~G~~~~~i~~p--~~~ 226 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD-----PDGKLLREIELP--VPR 226 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE-----TTSCEEEEEE-S--SSS
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC-----CCccEEEEEcCC--CCC
Confidence 4 4 88888863222 1222 222212347889999999877765444 66666 347777777653 458
Q ss_pred eeEEEEe
Q 010669 491 ASFLFLF 497 (504)
Q Consensus 491 v~~l~~~ 497 (504)
+++++|-
T Consensus 227 ~t~~~fg 233 (246)
T PF08450_consen 227 PTNCAFG 233 (246)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8999994
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=4.9e-10 Score=112.95 Aligned_cols=216 Identities=17% Similarity=0.260 Sum_probs=160.4
Q ss_pred ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC--e
Q 010669 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--T 333 (504)
Q Consensus 256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~ 333 (504)
+..+++..|+...+|++|+.+.+.|+.|+..|.|++|++.++ .......+|.+.|+-+.-+.+|..+++.+.-. .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCch
Confidence 445677788999999999999999999999999999999987 55566789999999999999998777765433 4
Q ss_pred EEEEECCC-CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-eC---CCCCeEEEEEc
Q 010669 334 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DG---HVGAVTAISFS 408 (504)
Q Consensus 334 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-~~---~~~~i~~l~~s 408 (504)
..+|++.+ +.....+ ..-.++.|+.....-+.|+......+||+.++.++.++ .+ ....-++..|+
T Consensus 1169 saLW~~~s~~~~~Hsf---------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HHHhccccccCccccc---------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 67899864 2223333 24568889887666667777778999999999877663 22 22234788999
Q ss_pred CCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCC
Q 010669 409 ENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGT 488 (504)
Q Consensus 409 ~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~ 488 (504)
|+..+++- ||| +||+|....++.|... . .-..-.|+|+|.-++..+ .|||+ ++++.+++.+..
T Consensus 1240 P~D~LIln---dGv-LWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS---EIwD~----RTF~lLh~VP~L--- 1302 (1516)
T KOG1832|consen 1240 PCDTLILN---DGV-LWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS---EIWDM----RTFKLLHSVPSL--- 1302 (1516)
T ss_pred CCcceEee---Cce-eeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec---hhhhh----HHHHHHhcCccc---
Confidence 99887763 444 7999998777777543 1 222346999999998877 68998 778888777664
Q ss_pred CceeEEEEeecCc
Q 010669 489 GAASFLFLFVLGQ 501 (504)
Q Consensus 489 ~~v~~l~~~~~g~ 501 (504)
.-..+.|...|-
T Consensus 1303 -dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGD 1314 (1516)
T ss_pred -cceEEEeccCcc
Confidence 235556665554
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=5.6e-07 Score=89.44 Aligned_cols=234 Identities=16% Similarity=0.144 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (504)
Q Consensus 234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (504)
++..+++++.+|.++.+|..+|+.+...... +.+.+.... .+..++.++.+|.+..||..++ +.+-.+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATG---ERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCC---ceeeEEccCCCce
Confidence 4667788888999999999999887765532 222221111 3456777888999999999876 3333222211111
Q ss_pred -----EEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC--CCeEEEEECC--CCCEEEEEeCCCcEEEE
Q 010669 314 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW 384 (504)
Q Consensus 314 -----~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p--dg~~l~~g~~dg~I~iw 384 (504)
.+... .+..++.++.+|.+..+|.++|+...........+.. .....+.-+| .+..+++++.+|.++.|
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 01111 1346788888999999999999876544311010000 0000111112 34577778889999999
Q ss_pred EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
|..+++.+..... . ....... .+..++.++.++ |..+|..+++.+....... .....+... .+..|++++.+
T Consensus 257 d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCC
Confidence 9999987765542 1 1222222 456677777777 9999999988765542211 111222222 46688888777
Q ss_pred --EEEEEeeccCccceeEEEccCC
Q 010669 464 --IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 464 --i~vw~~~~~~~~~~~i~~~~~h 485 (504)
+.+++. .+++.+.+++.+
T Consensus 330 G~l~~~d~----~tG~~~~~~~~~ 349 (377)
T TIGR03300 330 GYLHWLSR----EDGSFVARLKTD 349 (377)
T ss_pred CEEEEEEC----CCCCEEEEEEcC
Confidence 777775 567777777654
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=1.3e-08 Score=89.31 Aligned_cols=196 Identities=16% Similarity=0.272 Sum_probs=118.3
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCce------------EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI------------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~------------~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd 293 (504)
|+.+.++. ...|+++..++.+..+....+.+ ...+..|.++-.+-..+-.++-+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55555553 34566666666666555433322 222222333222222233456799999999999998
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-----CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 367 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p- 367 (504)
.+.. +...+.+..-...-.+.++...++.+.++.- -+..+.|+++..+....-. . . ...|++++-||
T Consensus 118 ~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~-~-~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 118 TDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---K-A-LDAVTALCSHPA 190 (319)
T ss_pred chHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc---c-c-cccchhhhCCcc
Confidence 7642 1222222211111122223334555544321 2345566665433222111 1 1 13499999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCC
Q 010669 368 DGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK 429 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~ 429 (504)
..+++++|+.||.+-+||.|+.. +...++.|..+|..+-|+| ++..|+++++|| +..||-.+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 66788899999999999999874 4455678999999999999 688999999999 99999763
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.4e-07 Score=93.58 Aligned_cols=245 Identities=12% Similarity=0.154 Sum_probs=169.4
Q ss_pred eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc--ccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd 293 (504)
.+-..+|...|.-+.|+.+...|-+...+|.|.||-+-.|.-.... ....+.|.+++|..+|..++..-.||.|.|=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 3446789999999999999999999999999999998777543322 23456789999999999999999999998877
Q ss_pred CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-------EEEEeecCCCCCCCCCeEEEEEC
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-------CLTQVSDAGTDGRPEGYTSAAFH 366 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~ 366 (504)
++....+. ..+++ .....+.|++|.+.++.+-..|.+++||.+..- +....... .......+..+.|.
T Consensus 144 vdGNRIwg--KeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~-~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 144 VDGNRIWG--KELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI-FSNFPTKIAEIEWN 218 (1189)
T ss_pred eccceecc--hhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee-ecCCCccccceeec
Confidence 76532111 11221 224478899999999988899999999976431 11111110 11122335555553
Q ss_pred --------CCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---------c-EEEEEcC
Q 010669 367 --------PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---------G-VKLWDLR 428 (504)
Q Consensus 367 --------pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---------~-v~vwd~~ 428 (504)
||-..|+++..+|.+.|..-.+......+. ....+..+.|+++|..|+.++.+ + |.+|. .
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-P 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-c
Confidence 477889999999998886544433222333 22578899999999999998754 2 44444 3
Q ss_pred CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~ 469 (504)
-|+.+.+++.+ ...|++++|-..|-.++.+-.. |.+=++
T Consensus 297 ~G~i~gtlkvp--g~~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 297 YGHIVGTLKVP--GSCITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred chhheEEEecC--CceeeeeEEcCCceEEEEEecceEEEEee
Confidence 46777777776 5789999998877776666555 444333
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.5e-08 Score=100.41 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=132.4
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
...++|++++ +++++-|+.+|.|++++.. +.. .+...|... ..+|.++++|+.||+|.|-.+-++ ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~---~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD---DE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCC---cc
Confidence 3457788877 7899999999999999875 333 333345443 558999999999999999988775 33
Q ss_pred eEEeccCCcCeEEEEEccC-----CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 303 KHTLKDHTAEVQAVTVHAT-----NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
..++ ....++.+++++|+ .+.+++|+.-| +.++.-+-........ .....++|.++.|. |+++|-++.
T Consensus 106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~---l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV---LSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee---eecCccceEEEEec--CcEEEEecC
Confidence 3333 23578999999997 56899999988 7776533211111111 12345789999997 678888877
Q ss_pred CCcEEEEEcCCCceeeeeeCCCC------CeEEEEEcCCCcEEEEEeCCcEEEEEcCCC
Q 010669 378 EALVKIWDVKSQANVAKFDGHVG------AVTAISFSENGYYLATAAHDGVKLWDLRKL 430 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~------~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~ 430 (504)
+| |+|||+..++.+..+..... ....+.|.++ ..|+.|-.+.|+|..++++
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEecc
Confidence 77 99999999888777654333 2345777754 4677788888999988843
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=1.4e-07 Score=94.43 Aligned_cols=233 Identities=14% Similarity=0.078 Sum_probs=167.1
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC------------CEEEEEeCCCcEEEE
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG------------DLFLTGSADKTVRVW 292 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~------------~~l~s~s~dg~i~iw 292 (504)
.-.+++|+|.| ++|.|+. ..|.|-|..+-+.+..+..|...|+.+.|.|-. -+|+++.-.|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35688999866 6666664 478899999999999999999999999998621 147778888999999
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEcc---CC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHA---TN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 367 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p- 367 (504)
|.... ..+..+..|.+++..++|-+ +. ..++.-....++.+|+..+|+...... .......|+.+.|
T Consensus 95 d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-----ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 95 DFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-----YSHEILSCFRVDPF 166 (1062)
T ss_pred Eehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-----cCCcceeeeeeCCC
Confidence 99875 45556778889999999976 33 466666777899999999998877664 2235678899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-------CceeeeeeCCCC------------C-------------eEEEEEcCCC-cEE
Q 010669 368 DGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVG------------A-------------VTAISFSENG-YYL 414 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~-------~~~~~~~~~~~~------------~-------------i~~l~~s~~g-~~l 414 (504)
|.+.+..-+..|.+.+-+.-. ++..+.-..|.. . .-.++|+|.- +.+
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 778888878888887776522 122221112211 0 1124677753 344
Q ss_pred EEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCC--CEEEEEeCc--EEEEEe
Q 010669 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG--SYLAVASAD--IRVYQV 469 (504)
Q Consensus 415 ~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g--~~l~~~~~d--i~vw~~ 469 (504)
+..-..++.++|+.-..++..+... .+.+.-+.|-|++ ..|++...| +.+|--
T Consensus 247 fi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 4444556999999988888888776 3455556666654 578888877 888864
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=6.6e-07 Score=82.69 Aligned_cols=220 Identities=16% Similarity=0.124 Sum_probs=134.6
Q ss_pred CCCcEEEEcCCCCceEEEcccCccceeEEE--EeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669 243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVK--FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320 (504)
Q Consensus 243 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~--~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p 320 (504)
.+|+|..||..+|+.+....--. .+.... ..+++..+++++.++.|..||..++ +.+..+.. .+.+.... ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VV 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EE
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCC---CEEEEeec-ccccccee-ee
Confidence 36899999999999888775311 122222 2335667888899999999999876 34433332 11111111 22
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC
Q 010669 321 TNKYFVTASLDNTWCFYDLSSGICLTQV-SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399 (504)
Q Consensus 321 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~ 399 (504)
.+..+++++.++.+..+|..+|+..... ..... ... .........++..++++..+|.|..+|+++|+.+.......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC-TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccccccceeeeEecccCCcceeeeecccccc-ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 4667777778889999999999998874 32111 111 12222333347788888889999999999999987776533
Q ss_pred CC----------eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEE
Q 010669 400 GA----------VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 466 (504)
Q Consensus 400 ~~----------i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~v 466 (504)
.. +..-....++ .++.++.++ +..+|+.+++.+.... . ..+.. ....++..|++++.+ +..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTTEEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCCEEEE
Confidence 22 1222222345 666666665 4444999998553222 1 12332 145678888888755 888
Q ss_pred EEeeccCccc
Q 010669 467 YQVASVKADW 476 (504)
Q Consensus 467 w~~~~~~~~~ 476 (504)
||..+++..|
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9984443333
No 304
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=3.5e-07 Score=86.84 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=132.3
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC-cEEEEeCCCCCCcceeEEeccCCcC
Q 010669 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK-TVRVWQGSEDGNYDCKHTLKDHTAE 312 (504)
Q Consensus 234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~h~~~ 312 (504)
+|++++..| -|...+.+...+-.+. -+|.+.|.-..+..+++-++.|..|| .+-|||..++ ....+...-+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGN 403 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccc
Confidence 578888877 4678887765554433 25677788888888888899999999 8999999874 44555666788
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC----cEEEEEcCC
Q 010669 313 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA----LVKIWDVKS 388 (504)
Q Consensus 313 v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg----~I~iwd~~~ 388 (504)
|.++..+++|++++.+.....+.+.|+++++....-. ....-|+.+.|||+++++|-+-.+| .|++||+..
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-----S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-----SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-----cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999999999999999999997654332 3346799999999999999987766 689999988
Q ss_pred CceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669 389 QANVAKFDGHVGAVTAISFSENGYYLATAA 418 (504)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~ 418 (504)
++...... ..+.=.+-+|.|+|++|.--+
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 77544332 233334567888998876554
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=4.4e-09 Score=95.66 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=123.3
Q ss_pred EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-----eEEEEeecCCCCC
Q 010669 281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDG 355 (504)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~ 355 (504)
++.+.+-.|-+-|+.++ ....|. ..+.|.++.|+..+++++.|+.+|.|..+|++.+ .+...+ -
T Consensus 228 fs~G~sqqv~L~nvetg----~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl------y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG----HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL------Y 296 (425)
T ss_pred ecccccceeEEEEeecc----cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE------E
Confidence 55666777888888874 233343 5677999999999999999999999999999865 233333 4
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCCCeEEE--EEcCCCcEEEEEeCCc-EEEEEcC
Q 010669 356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAI--SFSENGYYLATAAHDG-VKLWDLR 428 (504)
Q Consensus 356 ~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l--~~s~~g~~l~s~~~d~-v~vwd~~ 428 (504)
|.+.|+++..-. ++.+|++.+.+|.|.+||+|.-++ +..+.||...-..+ -..+....++++++|. .+||.++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 667899998888 889999999999999999987766 88999986544333 3345566788888888 9999999
Q ss_pred CCcceeeeecCCC--CCCeeEEEECC
Q 010669 429 KLKNFRSFESSDS--ETPTNSVDFDH 452 (504)
Q Consensus 429 ~~~~~~~~~~~~~--~~~v~~i~~~~ 452 (504)
.+..+.+++.... ...+.+++|+.
T Consensus 377 ~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCceeeccCCCCccccccccceehhc
Confidence 9999888876532 23456666653
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=5.9e-09 Score=94.86 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=118.2
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeCCCC
Q 010669 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-----ANVAKFDGHVG 400 (504)
Q Consensus 326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~~~~ 400 (504)
++.+.+..+-+-|+++|....- ...+.|.++.|+..+++++.|+.+|.|..+|+|.+ .+...+. |.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS 299 (425)
T ss_pred ecccccceeEEEEeeccccccc-------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc
Confidence 5666777889999998753322 23457889999999999999999999999999865 3455555 888
Q ss_pred CeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcc---eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccC
Q 010669 401 AVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK 473 (504)
Q Consensus 401 ~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~ 473 (504)
.|+++..-. ++.+|.+.+.+| |++||+|..++ +..+.+|.....-.-+..++...+++++|.| .+||.+
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl---- 375 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL---- 375 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec----
Confidence 999987766 778888888888 99999998777 8888888665556667778888899999999 999999
Q ss_pred ccceeEEEccC
Q 010669 474 ADWNCIKTFPD 484 (504)
Q Consensus 474 ~~~~~i~~~~~ 484 (504)
+.+..+.+++-
T Consensus 376 ~~ghLl~tipf 386 (425)
T KOG2695|consen 376 DSGHLLCTIPF 386 (425)
T ss_pred ccCceeeccCC
Confidence 77888877754
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=1.7e-06 Score=77.71 Aligned_cols=202 Identities=15% Similarity=0.229 Sum_probs=122.7
Q ss_pred CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-------CccceeEEEEeeCC------CEEEEEeCCCc
Q 010669 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEG------DLFLTGSADKT 288 (504)
Q Consensus 222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~l~~s~~~------~~l~s~s~dg~ 288 (504)
..+.=.-++||||+.+||.+...|+|++||+... .+..+.. -..+|..+.|.+.. ..|++-..+|.
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 3444567999999999999999999999998753 3333332 23567777776421 24777788898
Q ss_pred EEEEeCCC--CCCcceeEEec---cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669 289 VRVWQGSE--DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 363 (504)
Q Consensus 289 i~iwd~~~--~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 363 (504)
++-|-+.. .+.++..+.+. .+...|.++.++|..+.|++|+.... +.+. .. .....+++-
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~-------a~~~GLtaW 185 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--SK-------ASSCGLTAW 185 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--cc-------ccccCceEE
Confidence 88887632 34455555544 24668999999999898888765322 0000 00 001122222
Q ss_pred EECCCCCE--EEEEeCCCc------EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669 364 AFHPDGLI--LGTGTSEAL------VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (504)
Q Consensus 364 ~~~pdg~~--l~~g~~dg~------I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~ 434 (504)
..-.+..+ .++...|+. -.+|.+-+.+...........|..|..||||..|++...+| |.+|++...+...
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 21111110 011111111 12333222211111122456899999999999999999999 9999999988877
Q ss_pred eeecC
Q 010669 435 SFESS 439 (504)
Q Consensus 435 ~~~~~ 439 (504)
.+...
T Consensus 266 ~W~~~ 270 (282)
T PF15492_consen 266 SWKQD 270 (282)
T ss_pred ccchh
Confidence 77654
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.87 E-value=5.6e-08 Score=99.02 Aligned_cols=181 Identities=21% Similarity=0.308 Sum_probs=138.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (504)
Q Consensus 234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (504)
++..++.|+-...+..+|+.+.+..+...-..+.|+-+.. +++++++|...|+|.+-|..+. +.++++..|++.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---ETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC---ceeeeeeccccce
Confidence 4556777887888889999988877776655545666654 7889999999999999998775 8899999999999
Q ss_pred EEEEEccCCCEEEEEeC---------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEE
Q 010669 314 QAVTVHATNKYFVTASL---------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI 383 (504)
Q Consensus 314 ~~l~~~p~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~i 383 (504)
.++.. .|+.|++||. |..|++||++..+.+.-+.. .....-+.|+| -...+++.+..|...+
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------~~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------PYGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc------ccCchhhhhcccccceEEEEecccceee
Confidence 88876 4899999975 55689999998766554431 12235678888 3457888889999999
Q ss_pred EEc---CCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEc
Q 010669 384 WDV---KSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 427 (504)
Q Consensus 384 wd~---~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~ 427 (504)
-|. .+.. .+..+......+..+.++++|..|+.|..+| |.+|--
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 993 3331 2333333445699999999999999999999 999973
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=6.2e-07 Score=91.19 Aligned_cols=207 Identities=15% Similarity=0.222 Sum_probs=141.6
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCc-----EEEEeCCCC-
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKT-----VRVWQGSED- 297 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~-----i~iwd~~~~- 297 (504)
.|+| |++.+..++.|+.+|.|.+++.. -+.+..++.+...|...-|.- +.++|++.+.|+. ++||+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 56788899999999999888742 455577887777733333443 4467888776654 899998753
Q ss_pred -CC-ccee--EEecc-----CCcCeEEEEEccCCCEEEEEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669 298 -GN-YDCK--HTLKD-----HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFH 366 (504)
Q Consensus 298 -~~-~~~~--~~~~~-----h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (504)
++ ..+. +.+.. ...++.+++.|.+-+.+++|-.+|.|..+.-+ ..+..+... ......+|+.+++.
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~---~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY---SHRGKEPITGLALR 180 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee---eccCCCCceeeEEe
Confidence 12 3444 12222 34678999999999999999999999988422 111111111 11335789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeee
Q 010669 367 PDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE 437 (504)
Q Consensus 367 pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~ 437 (504)
.++..++.......|.+|.+....+ ...+..|...++|.+|++....+++++...+.+||....+.-..+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 9998733333445799999974443 4447778889999999987666777777779999988655555555
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=9.5e-09 Score=102.04 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=144.5
Q ss_pred cccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~ 295 (504)
+..+|...|+.+.|+|.. ..+++++.|-.+..||+.+. ..+..+..-...-..++|+-....+++.+..+.|++||.+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 457899999999999975 58999999999999998765 3344444444557889998744445555667789999999
Q ss_pred CCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--CCEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLIL 372 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l 372 (504)
.++ .+...+++|...|+.+.|+. ....+.+++.||+|++||.+....-.... .....++.--.+.|- |.++
T Consensus 189 ~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 189 KGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred CCC--cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceeccccccCceeEe
Confidence 876 66778888999999999875 33578899999999999987643222211 122356666677773 3333
Q ss_pred EEEeCCCcEEEEE---------cCC-CceeeeeeCCCCCeEEEEEcCC----------CcEEEEEeCCc-EEEEEcC
Q 010669 373 GTGTSEALVKIWD---------VKS-QANVAKFDGHVGAVTAISFSEN----------GYYLATAAHDG-VKLWDLR 428 (504)
Q Consensus 373 ~~g~~dg~I~iwd---------~~~-~~~~~~~~~~~~~i~~l~~s~~----------g~~l~s~~~d~-v~vwd~~ 428 (504)
.-.-.+..+.+++ ..+ .++++.|.||...|....|-.. ...|++-+.|. +++|-+.
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 2222222444443 332 3678999999988877666432 34689999997 9999765
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.7e-07 Score=92.75 Aligned_cols=193 Identities=16% Similarity=0.181 Sum_probs=129.1
Q ss_pred EEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC-eEEEEEccCCCEEEEEeCCC-----eEEEEECCCC---
Q 010669 272 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHATNKYFVTASLDN-----TWCFYDLSSG--- 342 (504)
Q Consensus 272 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~--- 342 (504)
+|++.+..++.|+.+|.|.+++-.- +..+.++.+... |..+....+.++|++.+.|+ .+++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3577888999999999998886433 555667777666 44443333346888877765 4899998642
Q ss_pred ---eEEEEee--cCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc---CC-CceeeeeeCCCCCeEEEEEcCCCcE
Q 010669 343 ---ICLTQVS--DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV---KS-QANVAKFDGHVGAVTAISFSENGYY 413 (504)
Q Consensus 343 ---~~~~~~~--~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~---~~-~~~~~~~~~~~~~i~~l~~s~~g~~ 413 (504)
.++.... .........++.+++.|.+-+.+++|-.+|.|..+.= |. +....-......+|+.+.|..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 2331111 1112234678999999999999999999999998842 11 1111112224569999999998877
Q ss_pred -EEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669 414 -LATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 414 -l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~ 469 (504)
+++++...|.+|.+.. +....-....++..+.|..|++...-+++++.. +.+|+.
T Consensus 186 ~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~s 242 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDS 242 (933)
T ss_pred eEEEEecceeEEEEecC-CCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence 6666666799999984 432222122336788899998866645555555 999997
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=4.4e-06 Score=75.07 Aligned_cols=233 Identities=15% Similarity=0.192 Sum_probs=132.9
Q ss_pred EEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcc---cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669 229 LDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (504)
Q Consensus 229 ~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (504)
++.+.+|++||.-- |..|.|=..++. ..+.+.+ ...-.-..++||||+.+|+.+...|+|++||+... .+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~----~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS----EL 77 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc----ee
Confidence 56678899888764 566766554332 2223322 22233578999999999999999999999998753 22
Q ss_pred EEec-------cCCcCeEEEEEccC------CCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCCCCCCCCeEEEEE
Q 010669 304 HTLK-------DHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGYTSAAF 365 (504)
Q Consensus 304 ~~~~-------~h~~~v~~l~~~p~------~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~ 365 (504)
..+. .-...|.++.|.+. ...|++-..+|.++-|-+.. .+....+.. ...+...|.++.+
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf--~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF--SSHYPHGINSAVY 155 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe--cccCCCceeEEEE
Confidence 2222 12356777777542 22567777888877766532 222223321 2244678999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC-cE-EEEEeCCcE-------EEEEcCCCcceeee
Q 010669 366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YY-LATAAHDGV-------KLWDLRKLKNFRSF 436 (504)
Q Consensus 366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~-l~s~~~d~v-------~vwd~~~~~~~~~~ 436 (504)
+|..++|++|+.... ..+. -......+++-..-.+. ++ .++..++.+ .+|.+-+.+... .
T Consensus 156 ~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~ 224 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-R 224 (282)
T ss_pred cCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-c
Confidence 999888888765322 0000 00111222222222111 11 112222221 233333222111 1
Q ss_pred ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669 437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 437 ~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~ 484 (504)
.. .....|..|..+|||..||+...+ +.+|++ ...+....+..
T Consensus 225 ~~-~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i----PsL~~~~~W~~ 269 (282)
T PF15492_consen 225 QG-QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI----PSLRLQRSWKQ 269 (282)
T ss_pred cc-cCCCceEEEEECCCCCEEEEEEcCCeEEEEec----Ccchhhcccch
Confidence 11 125689999999999999999887 999999 44555544443
No 313
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=2.8e-06 Score=84.42 Aligned_cols=220 Identities=17% Similarity=0.134 Sum_probs=133.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 314 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 314 (504)
++.+++++.+|.|+.+|..+|+.+..+............ ++..++.++.+|.+..+|..++ +........ +.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~-~~~~ 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDG---KELWRAKLS-SEVL 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCC---cEeeeeccC-ceee
Confidence 678888889999999999999988766543322222222 5677888899999999998775 333322211 2222
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 010669 315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK 394 (504)
Q Consensus 315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~ 394 (504)
+.-.. .+..++.++.+|.+..||.++|+.+................+... .+..++++..+|.+..+|.++++.+..
T Consensus 139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence 11111 355777788899999999999988776643211000000011111 124677888899999999999987654
Q ss_pred eeCCC--C--C------e-EEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669 395 FDGHV--G--A------V-TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 395 ~~~~~--~--~------i-~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
..... + . + ....+ .+..++.++.++ ++.||..+++.+...... ...... ..+..+++++.
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred eccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC----CccCce--EeCCEEEEECC
Confidence 32110 0 0 0 11112 244666667676 999999998876655422 111222 24566666666
Q ss_pred c--EEEEEeec
Q 010669 463 D--IRVYQVAS 471 (504)
Q Consensus 463 d--i~vw~~~~ 471 (504)
+ +..+|...
T Consensus 288 ~G~l~~~d~~t 298 (377)
T TIGR03300 288 DGVVVALDRRS 298 (377)
T ss_pred CCeEEEEECCC
Confidence 6 77777633
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.1e-08 Score=90.87 Aligned_cols=217 Identities=18% Similarity=0.154 Sum_probs=153.0
Q ss_pred ccCCCCCeEEEEeccCCCEEEEEeC-CCcEEEEcCCCCceEEEcccCccceeEEEEe-eCC----CEEEEEeCCCcEEEE
Q 010669 219 HKTSKPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEG----DLFLTGSADKTVRVW 292 (504)
Q Consensus 219 ~~~~~~~I~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-~~~----~~l~s~s~dg~i~iw 292 (504)
...|-..|.+++.+.++.++++++. |..++++|+.+-..+..++-.. ....+.|. ..| ..-++.-.+|.+.|+
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~Vv 127 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVV 127 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEE
Confidence 4557778999999999999999887 9999999988765543332111 11122232 223 123334468899999
Q ss_pred eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC------CeEEEEeec----CCCCCCCCCeEE
Q 010669 293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS------GICLTQVSD----AGTDGRPEGYTS 362 (504)
Q Consensus 293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~----~~~~~~~~~v~~ 362 (504)
|-..+.. +....-.-|..+|..+.+++.++.+++....|.|..|.... .+....+.. .+.........+
T Consensus 128 D~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 128 DGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred CCcCCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 9765431 23333456999999999999999999999999999999873 111111110 001123456789
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC--------------------------------CC-CCeEEEEEcC
Q 010669 363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--------------------------------HV-GAVTAISFSE 409 (504)
Q Consensus 363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--------------------------------~~-~~i~~l~~s~ 409 (504)
+.|+|+|..+.+-+.|..|+++++++++.++.+.. |. ..-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 99999999999999999999999999876554321 11 1345678999
Q ss_pred CCcEEEEEeCCcEEEEEcCCCcceeeee
Q 010669 410 NGYYLATAAHDGVKLWDLRKLKNFRSFE 437 (504)
Q Consensus 410 ~g~~l~s~~~d~v~vwd~~~~~~~~~~~ 437 (504)
.|++|+-|+-=||++.++.++.+.+.+.
T Consensus 287 s~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 287 SGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred CCCEEEeecceeEEEEEeecCeEEEEec
Confidence 9999999998899999999888776553
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=4.4e-08 Score=85.98 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=96.3
Q ss_pred ccCCCEEEEEeCCCcEEEEcCCCCc-eEEEcccCccceeEEEEeeCCCEEEEEeC-----CCcEEEEeCCCCCCcceeEE
Q 010669 232 HYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----DKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 232 s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~ 305 (504)
+--++.+++++.||.+.+++.+.-. ....+..-...-.+.++...++++.++.. -+..+.|+++..+.+.. .
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~--~ 175 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP--S 175 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc--c
Confidence 3446789999999999999875411 11111111111222333345555554432 23455666554321111 1
Q ss_pred eccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEE
Q 010669 306 LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI 383 (504)
Q Consensus 306 ~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~i 383 (504)
..-...|.+++-||.. +.+++|+.||.+.+||.+.......+ ...|+..+..+-||| ++..|+++++||.+.-
T Consensus 176 -~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 176 -KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred -ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----HHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 1112349999999965 56777888999999999987544433 337888999999999 7889999999999999
Q ss_pred EEcCC
Q 010669 384 WDVKS 388 (504)
Q Consensus 384 wd~~~ 388 (504)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99763
No 316
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.75 E-value=1e-08 Score=87.22 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=48.7
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh----------------cCCCCCCCCCCCCCccccccC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD----------------YGKCPVTGEPLTMDDIVPIKT 55 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~p~~~~~~~~~~~~~~~~ 55 (504)
+.|+|+.+..++||+++ +||+|++.||.+|+.. ..+||++..+++..+|+||-.
T Consensus 19 ~~CpICld~~~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 19 FDCNICLDQVRDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCccCCCcCCCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 46999999999999996 9999999999999863 247999999999999999975
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.72 E-value=6.3e-06 Score=87.15 Aligned_cols=200 Identities=13% Similarity=0.193 Sum_probs=134.5
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC----CCCC
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS----EDGN 299 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~----~~~~ 299 (504)
..|.++.|..+++-++.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-. ....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 58999999999999999999999999988766432 222234679999999999999888888887765420 0000
Q ss_pred ----------------cceeEEeccC---------------------CcCeEEEEEccCCCEEEEEe----CC-CeEEEE
Q 010669 300 ----------------YDCKHTLKDH---------------------TAEVQAVTVHATNKYFVTAS----LD-NTWCFY 337 (504)
Q Consensus 300 ----------------~~~~~~~~~h---------------------~~~v~~l~~~p~~~~l~s~s----~d-g~i~iw 337 (504)
.+....+.+. .+.=+.|.|--||.+|++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0101112111 11123588999999998842 23 789999
Q ss_pred ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCC
Q 010669 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN 410 (504)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~ 410 (504)
|-+ |..-..-. .....-.+++|-|.|.++++-. +|+.|.+|.- +| .....+......|..++|+.+
T Consensus 228 drE-g~Lns~se-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 228 DRE-GALNSTSE-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred ccc-chhhcccC-----cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence 977 43222111 2223457899999999998853 4567888874 33 222233333445999999999
Q ss_pred CcEEEE---EeCCc-EEEEEcCCCc
Q 010669 411 GYYLAT---AAHDG-VKLWDLRKLK 431 (504)
Q Consensus 411 g~~l~s---~~~d~-v~vwd~~~~~ 431 (504)
+..|++ ..... |++|-+.+..
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeE
Confidence 999998 44455 9999987754
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.8e-06 Score=76.12 Aligned_cols=236 Identities=9% Similarity=0.051 Sum_probs=134.4
Q ss_pred EEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CE
Q 010669 247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KY 324 (504)
Q Consensus 247 i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~ 324 (504)
+++.+..+.+....+.+|...|.+++|+|..+ ++..++.+..|+|.|+++. .++..+..+ ..+++++|.-+. ++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcce
Confidence 66666665555666778889999999999766 7889999999999999985 556666666 789999998765 57
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC------CCCCEEEEEeCCCcEEEEEcCCC----ceeee
Q 010669 325 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH------PDGLILGTGTSEALVKIWDVKSQ----ANVAK 394 (504)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------pdg~~l~~g~~dg~I~iwd~~~~----~~~~~ 394 (504)
|..|...|.|.+||++..+........ .-...+|..++.- +.|.+++....+ +..|.+.-. .++..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a--~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVA--NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhh--hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence 778888999999999876433221110 0111234443332 234444443332 445655321 12222
Q ss_pred eeCCCCCeEEEEEcCCCc-EEEEEeCC----cEE----EEEcCCCcceeeeec----CC-CCCCeeEEEE-CCCCCEEEE
Q 010669 395 FDGHVGAVTAISFSENGY-YLATAAHD----GVK----LWDLRKLKNFRSFES----SD-SETPTNSVDF-DHSGSYLAV 459 (504)
Q Consensus 395 ~~~~~~~i~~l~~s~~g~-~l~s~~~d----~v~----vwd~~~~~~~~~~~~----~~-~~~~v~~i~~-~~~g~~l~~ 459 (504)
+. ..+...++.+.+-.+ .|++.-.+ .++ --|.+.|..+..-.. .. ..-.-....+ .++.++++.
T Consensus 327 le-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 22 234555566655333 34443331 011 112222222211110 00 0000111222 345577776
Q ss_pred EeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669 460 ASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV 498 (504)
Q Consensus 460 ~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~ 498 (504)
.+.+ +.+||. .+++.++++.- ..+|.++..+.
T Consensus 406 ~gd~tn~lil~D~----~s~evvQ~l~~---~epv~Dicp~~ 440 (463)
T KOG1645|consen 406 VGDSTNELILQDP----HSFEVVQTLAL---SEPVLDICPND 440 (463)
T ss_pred ecCCcceeEEecc----chhheeeeccc---Ccceeecceee
Confidence 6555 999998 77888888865 45666665554
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.66 E-value=1.1e-05 Score=74.59 Aligned_cols=191 Identities=12% Similarity=0.139 Sum_probs=120.1
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe-ccC---
Q 010669 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDH--- 309 (504)
Q Consensus 234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h--- 309 (504)
++..+++++.++.++.||..+|+.+..+.. .+.+.... ...+..++.++.++.+..+|..++ ...... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG---~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTG---KVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTS---CEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCc---ceeeeeccccccc
Confidence 567777778999999999999998877764 22222212 224556777778889999998876 333331 111
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC------CeEEEEECCCCCEEEEEeCCCcEEE
Q 010669 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE------GYTSAAFHPDGLILGTGTSEALVKI 383 (504)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~v~~~~~~pdg~~l~~g~~dg~I~i 383 (504)
............++.++.+..++.|..+|+++|+.+........ .... .+..-....++ .++.++.+|.+.-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 11122233333488899999899999999999999887764211 1111 12233333345 6666677775444
Q ss_pred EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 434 (504)
Q Consensus 384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~ 434 (504)
+|+.+++.+.... ...+..+ ...++..|+.++.++ |..||+++++...
T Consensus 188 ~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 188 VDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 4999998664333 2233332 345667777777666 9999999998654
No 320
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.7e-09 Score=90.29 Aligned_cols=51 Identities=35% Similarity=0.540 Sum_probs=48.2
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCCCccccc
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI 53 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~ 53 (504)
.|.||.+++.+||++| ||.+|||.-|++|++.-|. ||+|+.+|+.++|||=
T Consensus 213 cgkIt~el~~~pvi~p-sgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN 264 (284)
T KOG4642|consen 213 CGKITLELMREPVITP-SGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPN 264 (284)
T ss_pred hhhhhHHhhcCCccCc-cccchhHHHHHHHHHHhccCCchhcccCCHHhhccc
Confidence 4889999999999998 8999999999999999996 9999999999999874
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=4.3e-07 Score=91.13 Aligned_cols=246 Identities=14% Similarity=0.148 Sum_probs=158.9
Q ss_pred cCCCCCeEEEEecc-----------CC-------CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE
Q 010669 220 KTSKPGIVSLDIHY-----------SK-------DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL 281 (504)
Q Consensus 220 ~~~~~~I~~~~~s~-----------~~-------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 281 (504)
..|.++.++....| .| .++|.|...|+|.|+|+.++.....+..|++.|.++.|..+.. |+
T Consensus 404 g~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lv 482 (1062)
T KOG1912|consen 404 GSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LV 482 (1062)
T ss_pred CCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EE
Confidence 45777777776654 22 2688999999999999999999999999999999999975544 44
Q ss_pred EEeC----------CCcEEEEeCCCCCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEE----
Q 010669 282 TGSA----------DKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT---- 346 (504)
Q Consensus 282 s~s~----------dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~---- 346 (504)
+.+. -+.+.+-|++++-. +..+.+ .....+|..+..+..+.|++..-.|.-+.+||+++..++.
T Consensus 483 Sfsys~~n~~sg~vrN~l~vtdLrtGls-k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~ 561 (1062)
T KOG1912|consen 483 SFSYSHVNSASGGVRNDLVVTDLRTGLS-KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL 561 (1062)
T ss_pred EeeeccccccccceeeeEEEEEcccccc-cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh
Confidence 3332 24566778887522 222222 2345789999999999999999999999999996532211
Q ss_pred ------EeecC--C--------C-------------CCCCCCeE---------------------------EEEECCCCC
Q 010669 347 ------QVSDA--G--------T-------------DGRPEGYT---------------------------SAAFHPDGL 370 (504)
Q Consensus 347 ------~~~~~--~--------~-------------~~~~~~v~---------------------------~~~~~pdg~ 370 (504)
.+... . . ......+. .++| .+.
T Consensus 562 a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d 639 (1062)
T KOG1912|consen 562 ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDD 639 (1062)
T ss_pred cCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCC
Confidence 11000 0 0 00000111 1222 245
Q ss_pred EEEEEeCCCcEEEEEcCCCceee--eeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669 371 ILGTGTSEALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSV 448 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i 448 (504)
.++.|..+|.+.+||+...+... ....|........+-|....+++--.|.+-+||.+....+..+.+.+....+..+
T Consensus 640 ~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldv 719 (1062)
T KOG1912|consen 640 ILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDV 719 (1062)
T ss_pred eeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEE
Confidence 79999999999999985443222 1222333344445556444566666788999999988888888655445556667
Q ss_pred EECCCCCEEEEEeCcEEEEEe
Q 010669 449 DFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 449 ~~~~~g~~l~~~~~di~vw~~ 469 (504)
.|+.....++..++.+++-..
T Consensus 720 dlc~~~~~~l~~d~~~Rf~~m 740 (1062)
T KOG1912|consen 720 DLCEKSPLVLPNDNKERFRVM 740 (1062)
T ss_pred EecccCceecCCCCceeEEec
Confidence 776665555544433665554
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=9.4e-08 Score=60.53 Aligned_cols=39 Identities=38% Similarity=0.844 Sum_probs=36.7
Q ss_pred CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 255 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd 293 (504)
++++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=1.2e-05 Score=74.45 Aligned_cols=190 Identities=9% Similarity=0.113 Sum_probs=125.3
Q ss_pred EEeccCCCEEEEEe-----CCCcEEEEcCC-CCceEEEcccCccceeEEEEeeCCCEEEEEeC-----------------
Q 010669 229 LDIHYSKDVIATGG-----VDTNAVLFDRP-SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA----------------- 285 (504)
Q Consensus 229 ~~~s~~~~~l~sg~-----~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~----------------- 285 (504)
-.||+||++|++.- ..|.|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 57999999999864 35889999998 66778888888877888999999987777631
Q ss_pred -CCcEEEEeCCCCCCcceeEEe--ccCCcCeEEEEEccCCCEEEEEeCCCe-------EEEEECCCCeEEEEeecC--CC
Q 010669 286 -DKTVRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNT-------WCFYDLSSGICLTQVSDA--GT 353 (504)
Q Consensus 286 -dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~--~~ 353 (504)
+-++.+.|..++. ......+ ..|.-.|..+++.++|..++..-..|. +.+++.... ...+... ..
T Consensus 136 M~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~ 212 (305)
T PF07433_consen 136 MQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQW 212 (305)
T ss_pred cCCceEEEecCCCc-eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHH
Confidence 2234444544431 1122224 346678999999988876666544332 444443322 2222110 00
Q ss_pred CCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEE
Q 010669 354 DGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKL 424 (504)
Q Consensus 354 ~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~v 424 (504)
..-...+-+++++++|.++++.+ ..|.+.+||..+++.+....- ..+..++-.+++ ++++.+.+.+..
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~~~ 281 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQLIR 281 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccEEE
Confidence 12235788999999998776655 567899999999988776543 356777777777 666665554433
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=3.7e-06 Score=85.36 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=82.6
Q ss_pred EEeccCCCEEEEEe----CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 229 LDIHYSKDVIATGG----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 229 ~~~s~~~~~l~sg~----~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
..|+|...++++++ ..|.|.|| .++|++-+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+. ....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~ht 95 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHT 95 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc---eeee
Confidence 45888888877775 46788888 35566543332 1223677999998888999999999999987763 3333
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 340 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~ 340 (504)
....|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 345799999999999999999999999999999775
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=3.1e-07 Score=58.07 Aligned_cols=38 Identities=18% Similarity=0.493 Sum_probs=36.2
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (504)
+++.++.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999997
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.50 E-value=2.7e-05 Score=76.41 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=142.9
Q ss_pred ccCCCEEEEE---------eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669 232 HYSKDVIATG---------GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 232 s~~~~~l~sg---------~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
|||+++++.. +..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++. ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~--~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ--ET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE--EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC--eE
Confidence 5777776663 2346799999998765544333 67789999999999888775 4689999876641 11
Q ss_pred eEEecc-------C---------CcCeEEEEEccCCCEEEEEeCCC-e--------------------------------
Q 010669 303 KHTLKD-------H---------TAEVQAVTVHATNKYFVTASLDN-T-------------------------------- 333 (504)
Q Consensus 303 ~~~~~~-------h---------~~~v~~l~~~p~~~~l~s~s~dg-~-------------------------------- 333 (504)
..+..+ - -+.-..+-|+||+++|+....|. .
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 111111 0 11235688999999888764331 1
Q ss_pred ---EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--CC---CcEEEEEcCCCceeeeeeC-CCC---C
Q 010669 334 ---WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SE---ALVKIWDVKSQANVAKFDG-HVG---A 401 (504)
Q Consensus 334 ---i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--~d---g~I~iwd~~~~~~~~~~~~-~~~---~ 401 (504)
+.++|+.+++....-...........+..+.|.+++..|++.- .+ ..+.++|..++.....+.. ..+ .
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 2334444433221110000012234578899999988444332 22 2467778877654333321 222 2
Q ss_pred eEEEEEc-CCC-cEEEEEeCCc---EEEEEcCCCcceeeeecCCCCCCee-EEEECCCCCEEEE-EeCc----EEEEEee
Q 010669 402 VTAISFS-ENG-YYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSYLAV-ASAD----IRVYQVA 470 (504)
Q Consensus 402 i~~l~~s-~~g-~~l~s~~~d~---v~vwd~~~~~~~~~~~~~~~~~~v~-~i~~~~~g~~l~~-~~~d----i~vw~~~ 470 (504)
-....|. +++ .+|.....+| |.+++...+... .+... ...|. -+.|+++++.|+. +..+ -.||.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 2345554 554 4444555555 788888766533 33322 45564 4788998876654 4432 7888875
Q ss_pred ccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669 471 SVKADWNCIKTFPDLSGTGAASFLFLFVLGQT 502 (504)
Q Consensus 471 ~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~ 502 (504)
.. ....+..+... .+.-..+.|+|+|+.
T Consensus 314 ~~--~~~~~~~LT~~--~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 314 LD--SGGEPKCLTCE--DGDHYSASFSPDGKY 341 (353)
T ss_dssp TT--ETTEEEESSTT--SSTTEEEEE-TTSSE
T ss_pred eC--CCCCeEeccCC--CCCceEEEECCCCCE
Confidence 53 23444555443 222268999999874
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.45 E-value=9.3e-05 Score=73.94 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=133.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeE-EEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTS-VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 313 (504)
+..++.++.+|.++.+|..+|+.+....... .+.+ -.. .+..++.+..+|.+..+|..++ +.+-.+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDG---AVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCC---CEeeeecCCCCcc
Confidence 5567778889999999999999887766432 2222 111 2446777888899999999886 3333322111000
Q ss_pred E-EEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC--CCeEEEEECC--CCCEEEEEeCCCcEEEEEc
Q 010669 314 Q-AVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIWDV 386 (504)
Q Consensus 314 ~-~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~ 386 (504)
. ....+| .+..++.++.+|.+..+|..+|+...........+.. .....+..+| .+..+++++.+|.+..+|.
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 0 000011 2345777888999999999998876554321110000 0011112233 3456667778999999999
Q ss_pred CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--
Q 010669 387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-- 463 (504)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-- 463 (504)
.+++.+-.... +....+.. .+..|+.++.++ +..+|..+++.+-...... .....+... .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~ 346 (394)
T PRK11138 274 RSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGY 346 (394)
T ss_pred CCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECCEEEEEeCCCE
Confidence 99987655431 11122222 455666667777 9999999887654433211 111122222 25667777777
Q ss_pred EEEEEeeccCccceeEEEcc
Q 010669 464 IRVYQVASVKADWNCIKTFP 483 (504)
Q Consensus 464 i~vw~~~~~~~~~~~i~~~~ 483 (504)
+.+.|. .+++.+..++
T Consensus 347 l~~ld~----~tG~~~~~~~ 362 (394)
T PRK11138 347 LHWINR----EDGRFVAQQK 362 (394)
T ss_pred EEEEEC----CCCCEEEEEE
Confidence 555565 4566665554
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=2.7e-06 Score=87.12 Aligned_cols=149 Identities=20% Similarity=0.307 Sum_probs=114.2
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC---------CCcEEEEeCC
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---------DKTVRVWQGS 295 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~---------dg~i~iwd~~ 295 (504)
+|+-++ .+++++++|...|+|.+-|..+.+.+.++..|++.|.++.. .|+.|++||. |..|+|||++
T Consensus 179 ~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence 344444 35789999999999999999999999999999999988766 7899999975 4568999988
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEE---CCCCeE-EEEeecCCCCCCCCCeEEEEECCCCC
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYD---LSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGL 370 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd---~~~~~~-~~~~~~~~~~~~~~~v~~~~~~pdg~ 370 (504)
.- +.+..+.-+.++ .-+.|+|. ...+++++..|...+-| +.+... +..+. .....+..++++++|.
T Consensus 255 mm---ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-----p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 255 MM---RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-----PNGSGISAFDISSNGD 325 (1118)
T ss_pred hh---hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-----cCCCcceeEEecCCCc
Confidence 75 333334334343 56788885 45788889999999998 443322 22221 2234599999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 010669 371 ILGTGTSEALVKIWDV 386 (504)
Q Consensus 371 ~l~~g~~dg~I~iwd~ 386 (504)
.++.|..+|.|.+|--
T Consensus 326 alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eEEEecccCcEeeecC
Confidence 9999999999999973
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=8.3e-06 Score=81.63 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=132.7
Q ss_pred ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (504)
Q Consensus 265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (504)
...|.--++...+++++.|+.-|.+.+|+-..+. .......+-.+.+..+..|++..+++.|+..|.|.++-+..+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3345445566688999999999999999876542 22223333456677778899999999999999999998876433
Q ss_pred EE-EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669 345 LT-QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (504)
Q Consensus 345 ~~-~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~ 419 (504)
.. .+.......|...|++++|++++..+++|...|.|.+-.+.+. .....+-...+.|..+... ++.+|++..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl- 188 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL- 188 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh-
Confidence 22 1222223457889999999999999999999999998877662 1122222345677777665 444444443
Q ss_pred CcEEEEEcCCCcceeeeecCCCCC-CeeEEEECCC-----CCEEEEEeCcEEEEEeeccCccceeEEEc
Q 010669 420 DGVKLWDLRKLKNFRSFESSDSET-PTNSVDFDHS-----GSYLAVASADIRVYQVASVKADWNCIKTF 482 (504)
Q Consensus 420 d~v~vwd~~~~~~~~~~~~~~~~~-~v~~i~~~~~-----g~~l~~~~~di~vw~~~~~~~~~~~i~~~ 482 (504)
-.-.++++...+. ..+......+ .-...+|-|. ...|+++--..|+|..+- .++.++++
T Consensus 189 ~r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~---~G~V~~Th 253 (726)
T KOG3621|consen 189 TRCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADF---AGEVIKTH 253 (726)
T ss_pred hhhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeec---ceeEEEee
Confidence 3344566654432 2222211122 1234455543 345666666699998743 45555443
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.40 E-value=8.7e-05 Score=78.88 Aligned_cols=207 Identities=13% Similarity=0.180 Sum_probs=134.0
Q ss_pred cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC----CC
Q 010669 266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL----SS 341 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~----~~ 341 (504)
+.|.++.|..+++.++.+..+|.|.+-|..+. .......-...|.+++|+||+..++..+.++++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 67999999999999999999999999988773 22222233567999999999999999988888776432 11
Q ss_pred CeEE-------------------EEeecCCC----------------CCCCCCeEEEEECCCCCEEEEE-----eCCCcE
Q 010669 342 GICL-------------------TQVSDAGT----------------DGRPEGYTSAAFHPDGLILGTG-----TSEALV 381 (504)
Q Consensus 342 ~~~~-------------------~~~~~~~~----------------~~~~~~v~~~~~~pdg~~l~~g-----~~dg~I 381 (504)
.+.+ ..+..... ....+.=+.+.|--||.++++. .....|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1111 01110000 0011223468999999999983 233789
Q ss_pred EEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeee--ecCCCCCCeeEEEECCCCC
Q 010669 382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSF--ESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~--~~~~~~~~v~~i~~~~~g~ 455 (504)
+|||-. |..-..-....+.-.+++|-|.|.++++-..+ + |.+|.-.. -.-..+ ..+....++..++|+.++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCC
Confidence 999975 43322222233445689999999999887433 4 88887443 222222 2222234589999999999
Q ss_pred EEEE---EeCc--EEEEEeeccCccceeEE
Q 010669 456 YLAV---ASAD--IRVYQVASVKADWNCIK 480 (504)
Q Consensus 456 ~l~~---~~~d--i~vw~~~~~~~~~~~i~ 480 (504)
.|++ .... |++|-+.. ..|-.-+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N--yhWYLKq 330 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN--YHWYLKQ 330 (1265)
T ss_pred ceeeeecccccceEEEEEecC--eEEEEEE
Confidence 9998 3333 99998732 3454433
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.37 E-value=0.00015 Score=66.29 Aligned_cols=199 Identities=11% Similarity=0.168 Sum_probs=116.0
Q ss_pred CCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 224 ~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
..+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.......
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3599999999865 6667777888888886 47888776532 3557888888777777766678999999884432111
Q ss_pred ee---EEec-----cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC---CeEEEEeec---CCCCCCCCCeEEEEECC
Q 010669 302 CK---HTLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---GICLTQVSD---AGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 302 ~~---~~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~---~~~~~~~~~v~~~~~~p 367 (504)
.. ..+. .++..+-.++|.|.++.|+.+-......+|.+.. ......... .........+..++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 11 1111 3456689999999988888887776666666543 212111110 00112234578999999
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC---------CCeEEEEEcCCCcEEEEEeCCc-EEEE
Q 010669 368 -DGLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLW 425 (504)
Q Consensus 368 -dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~~~d~-v~vw 425 (504)
.|++++.+..+..|..+| .+|+.+..+.-.. ...-.|+|.++|.+.+++ +-+ .++|
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 677888888999999999 6777665543211 257889999999766554 555 5554
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.35 E-value=9.1e-05 Score=72.89 Aligned_cols=240 Identities=16% Similarity=0.190 Sum_probs=135.8
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-------------------------------------------EEEc
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-------------------------------------------VTTL 261 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-------------------------------------------~~~~ 261 (504)
.|+++.|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999988999999999999996432111 0111
Q ss_pred ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE--ecc------CCcCeEEEEEcc-----CC---CEE
Q 010669 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT--LKD------HTAEVQAVTVHA-----TN---KYF 325 (504)
Q Consensus 262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~------h~~~v~~l~~~p-----~~---~~l 325 (504)
....++|++++.| |=-+++.|..+|.+.|.|++.. ..+.. +.. ....|+++.|.. |+ -.+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 2245789999987 4458999999999999999764 33322 222 234678888853 22 478
Q ss_pred EEEeCCCeEEEEECC--C-CeEEEEeecCCCCCCCCCeEEEE-ECCC-C-------------------CEEEEEeCCCcE
Q 010669 326 VTASLDNTWCFYDLS--S-GICLTQVSDAGTDGRPEGYTSAA-FHPD-G-------------------LILGTGTSEALV 381 (504)
Q Consensus 326 ~s~s~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~-~~pd-g-------------------~~l~~g~~dg~I 381 (504)
++|+..|.+.+|.+. . +.....+... ...+...+..+. |+.+ | .-+++...+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGA-TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEE-E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeec-cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 899999999999874 1 2222222111 012233444333 3221 1 123444456789
Q ss_pred EEEEcCCCceeeeeeCCCCCeEEEEEc-----CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC--CCCeeEEEECCC
Q 010669 382 KIWDVKSQANVAKFDGHVGAVTAISFS-----ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHS 453 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s-----~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~--~~~v~~i~~~~~ 453 (504)
+++...+.+..+...........+.+- ..+..|++-..+| |++|.+...+.+........ ...+....++++
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 999998877665554222233344452 3577788888888 99999999998887776421 123556788999
Q ss_pred CCEEEEEeCc-EEEEEe
Q 010669 454 GSYLAVASAD-IRVYQV 469 (504)
Q Consensus 454 g~~l~~~~~d-i~vw~~ 469 (504)
|..++-.+.. +.++.+
T Consensus 318 Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 318 GDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp S-EEEE-SSSEEEEEEE
T ss_pred CCEEEEeCcccEEEEEE
Confidence 9999888776 555554
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=4.8e-05 Score=76.36 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=89.1
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
..|.--+++..+++++.|+.-|.+++|+...++.... ..+-.+.+..+..+++..+++.|+..|.|.++-+........
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3444455667799999999999999999876654332 223445566677788888899999999999998776432222
Q ss_pred eEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 010669 303 KHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 341 (504)
Q Consensus 303 ~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~ 341 (504)
...- ..|...|++++|++++..+++|...|.|.+..+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2211 23678999999999999999999999999988876
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.34 E-value=1.8e-07 Score=91.97 Aligned_cols=198 Identities=13% Similarity=0.217 Sum_probs=131.4
Q ss_pred CCeEEEEeccCCC--EEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEee-CCCEEEEEe----CCCcEEEEeC
Q 010669 224 PGIVSLDIHYSKD--VIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGS----ADKTVRVWQG 294 (504)
Q Consensus 224 ~~I~~~~~s~~~~--~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s~s----~dg~i~iwd~ 294 (504)
..+.|+++..+.+ .+++|..+|.|.+-.+....- .....+|....++++|++ |.+.|+.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4567888766544 789999999999987654321 334567888999999998 566677663 4678999999
Q ss_pred CCCCC-cceeEEecc-CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCE
Q 010669 295 SEDGN-YDCKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLI 371 (504)
Q Consensus 295 ~~~~~-~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~ 371 (504)
.+.-. ....-.+.+ ......+++|..+.+.+++|.....++++|++......... ....+..+...| .+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------NTKYVQGITVDPFSPNY 210 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------hhhhcccceecCCCCCc
Confidence 87411 111111222 33456688898888899999999999999998432211111 112466777888 6777
Q ss_pred EEEEeCCCcEEEEE-cCCCc-eeeeeeCC----CCCeEEEEEcCCC-cEEEEEeCCc--EEEEEcC
Q 010669 372 LGTGTSEALVKIWD-VKSQA-NVAKFDGH----VGAVTAISFSENG-YYLATAAHDG--VKLWDLR 428 (504)
Q Consensus 372 l~~g~~dg~I~iwd-~~~~~-~~~~~~~~----~~~i~~l~~s~~g-~~l~s~~~d~--v~vwd~~ 428 (504)
+++-. ||.|.+|| .++-+ ++..+... ...+..++|+|.. ..+++...|. |+++|+.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 76654 99999999 44432 23222211 2248999999943 3566666664 9999986
No 335
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.1e-07 Score=78.32 Aligned_cols=54 Identities=28% Similarity=0.567 Sum_probs=49.2
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--C-CCCCCCCCCCCccccccC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--K-CPVTGEPLTMDDIVPIKT 55 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~p~~~~~~~~~~~~~~~~ 55 (504)
|-|.|+-+..+|||||. |||.|+=-||-||++..+ + ||++.-.++.+.||||=.
T Consensus 48 FdCNICLd~akdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 48 FDCNICLDLAKDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred eeeeeeccccCCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 34999999999999996 999999999999999664 3 899999999999999964
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.34 E-value=0.00028 Score=71.69 Aligned_cols=145 Identities=15% Similarity=0.071 Sum_probs=95.0
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe----------------------------------
Q 010669 331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---------------------------------- 376 (504)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---------------------------------- 376 (504)
.+.+.+.|.++.+...++... .....++++|+|+++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkd 287 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKA 287 (635)
T ss_pred eEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhC
Confidence 456777788877766665422 1345567777777776664
Q ss_pred ------CCCcEEEEEcCC----C-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcc-----------
Q 010669 377 ------SEALVKIWDVKS----Q-ANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN----------- 432 (504)
Q Consensus 377 ------~dg~I~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~----------- 432 (504)
.++.|.++|.++ + +.+..+. -......+.++|||+++++++.- . |.|+|+.+.+.
T Consensus 288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 124577777776 2 3333333 34467789999999999888765 3 99999988663
Q ss_pred -eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec------cCccceeEEEccCC
Q 010669 433 -FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS------VKADWNCIKTFPDL 485 (504)
Q Consensus 433 -~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~------~~~~~~~i~~~~~h 485 (504)
+..... .......+|+++|+...+---| +..|++.. +.+.+..+..++-|
T Consensus 367 vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~ 425 (635)
T PRK02888 367 VVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH 425 (635)
T ss_pred EEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC
Confidence 222222 3345678899999866666666 99999854 22335666666655
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=2.7e-05 Score=76.96 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=81.2
Q ss_pred eeEEEEee-CCCEEEEE----eCCCcE----EEEeCCCCCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669 268 VTSVKFVT-EGDLFLTG----SADKTV----RVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337 (504)
Q Consensus 268 v~~l~~s~-~~~~l~s~----s~dg~i----~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (504)
..++.|+. ++..+.+. +.+|.+ .+|+...+ ..+.+... -.....|.+.+++|+...++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 46677765 33444443 334433 46666543 22333222 2567789999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 010669 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 389 (504)
Q Consensus 338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~ 389 (504)
|...+....... .-..+.++|||+|.++++|+..|.+.+||+.-+
T Consensus 287 D~~~~~t~~~ka-------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAKA-------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeeee-------cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 998774443321 245789999999999999999999999998543
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.28 E-value=0.0028 Score=63.88 Aligned_cols=246 Identities=13% Similarity=0.156 Sum_probs=133.5
Q ss_pred eEEEEeccCCCEEEEE-eCCC----cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC-----------cE
Q 010669 226 IVSLDIHYSKDVIATG-GVDT----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK-----------TV 289 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg-~~dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg-----------~i 289 (504)
+....++|+|+++|.+ +..| .++++|+.+|+.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999988765 3334 4999999999776532111 1123499999988766554333 37
Q ss_pred EEEeCCCCCCcceeEEeccCCc-C-eEEEEEccCCCEEEEEeCC----CeEEEEECCCC----eEEEEeecCCCCCCCCC
Q 010669 290 RVWQGSEDGNYDCKHTLKDHTA-E-VQAVTVHATNKYFVTASLD----NTWCFYDLSSG----ICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 290 ~iwd~~~~~~~~~~~~~~~h~~-~-v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~----~~~~~~~~~~~~~~~~~ 359 (504)
..|.+.+... .....+..... . ...+..++++++++..+.. ..+.+.|+..+ .....+.. .....
T Consensus 205 ~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~ 279 (414)
T PF02897_consen 205 YRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP----REDGV 279 (414)
T ss_dssp EEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE----SSSS-
T ss_pred EEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC----CCCce
Confidence 7777766422 21233333332 2 6788889999987765432 35788888774 22222221 11122
Q ss_pred eEEEEECCCCCEEEEEe---CCCcEEEEEcCCCce---eeeeeCCCC--CeEEEEEcCCCcEEEEEeCCc---EEEEEcC
Q 010669 360 YTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDLR 428 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~g~~l~s~~~d~---v~vwd~~ 428 (504)
...+... .+.+++... .++.|.-.++..... ...+..+.. .+..+... .+.+++....++ |+++|+.
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence 2333333 444444332 346777778876652 224444544 45555553 334455555554 9999998
Q ss_pred CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC--c--EEEEEeeccCccceeEE
Q 010669 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA--D--IRVYQVASVKADWNCIK 480 (504)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~--d--i~vw~~~~~~~~~~~i~ 480 (504)
.+.....+.... .+.|..+..+++++.+...-. - -.+|.++..+...+.++
T Consensus 358 ~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 DGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 444455555543 345667776676665544332 2 67776655544444443
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=7.7e-05 Score=73.83 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=78.1
Q ss_pred EEEEEcc-CCCEEEEE----eCCCe----EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669 314 QAVTVHA-TNKYFVTA----SLDNT----WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (504)
Q Consensus 314 ~~l~~~p-~~~~l~s~----s~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw 384 (504)
.++.|+- ++..+.+. +.+|. ..+|++..++...... . .-.....+.|++++|+...++.|+.||.|.+|
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv-t-sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV-T-SIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE-E-EEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 4556654 33444443 23443 4567776554221111 0 11345689999999999999999999999999
Q ss_pred EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669 385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 429 (504)
Q Consensus 385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~ 429 (504)
|...+... +....-.++.++|+|+|.++++|++.| +.+||+.-
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 98766332 223445788999999999999999999 99999863
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.27 E-value=0.00024 Score=72.18 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=118.2
Q ss_pred CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC----cEEEEeCCCCCCcceeEEeccCCcCeEEEEEc
Q 010669 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK----TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (504)
Q Consensus 244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (504)
.+.+.+.|..+.+...++.-. +....+.++++|+++++.+.+. ++..-+.... .....+.- ..+ -.+.
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvfni--~~i--ea~v 285 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVFNI--ARI--EEAV 285 (635)
T ss_pred eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEEch--HHH--HHhh
Confidence 455666777766666555432 2346678888999888776432 2222222111 11111100 000 0234
Q ss_pred cCCCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce--
Q 010669 320 ATNKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQAN-- 391 (504)
Q Consensus 320 p~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~-- 391 (504)
++|++... .++.|.+.|..+ ...+..+.. ......+.++|||+++++++ .+.+|.|+|+.+.+.
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 46776665 367899999998 344444432 24578899999999887765 488999999987553
Q ss_pred ----------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC----------CcceeeeecCCCCCCeeEEE-
Q 010669 392 ----------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK----------LKNFRSFESSDSETPTNSVD- 449 (504)
Q Consensus 392 ----------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~----------~~~~~~~~~~~~~~~v~~i~- 449 (504)
+.+..- .......+|.++|+...+-.-|+ |..||+.+ ...+..+..+- .+-.+.
T Consensus 358 ~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y---~pgh~~~ 433 (635)
T PRK02888 358 DGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY---QPGHNHA 433 (635)
T ss_pred hccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC---ccceeee
Confidence 222222 22345678999998888888887 99999876 23333344331 122222
Q ss_pred -----ECCCCCEEEEEe
Q 010669 450 -----FDHSGSYLAVAS 461 (504)
Q Consensus 450 -----~~~~g~~l~~~~ 461 (504)
-.|+|+||++..
T Consensus 434 ~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 434 SMGETKEADGKWLVSLN 450 (635)
T ss_pred cCCCcCCCCCCEEEEcc
Confidence 267888888764
No 341
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.26 E-value=1.4e-06 Score=54.77 Aligned_cols=39 Identities=36% Similarity=0.560 Sum_probs=32.8
Q ss_pred cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCC
Q 010669 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVT 41 (504)
Q Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (504)
|+|..+.+.+||+...+||+|.+.+|++|++.+.+||+.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999996555699999999999999998789973
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.24 E-value=0.0014 Score=65.45 Aligned_cols=214 Identities=13% Similarity=0.180 Sum_probs=112.7
Q ss_pred cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc---ceeEEeccCCcCeEEEEEccCC
Q 010669 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY---DCKHTLKDHTAEVQAVTVHATN 322 (504)
Q Consensus 246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~~p~~ 322 (504)
.|.||+.. |+.+.++.-..+.|.++.|..+. .|+.-..||.+++||+.....+ .......-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 49999864 67777765444889999998754 5666779999999998642100 0011111111122222333344
Q ss_pred CEEEEEeCCCeEEEEECCCCe-EEEEeec-CCCC--CCC-CCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 010669 323 KYFVTASLDNTWCFYDLSSGI-CLTQVSD-AGTD--GRP-EGYT-SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396 (504)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~~~--~~~-~~v~-~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~ 396 (504)
++.-..++.+.+..-.... ....... .... .+. .... ...++.+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333344554444322211 1111110 0000 000 0011 123444555555555555566444322211 22
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEE
Q 010669 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQ 468 (504)
Q Consensus 397 ~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~ 468 (504)
..+++..+++||+|+++|.-..+| +.+.+..-.+.+..+.... ......+.|.-+...++.-...+.++.
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 246899999999999999999888 8888765555555555432 356678888776655544422255443
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.23 E-value=0.00032 Score=70.11 Aligned_cols=217 Identities=12% Similarity=0.061 Sum_probs=124.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCcc----------cee-EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----------KVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~----------~v~-~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (504)
+..+++++.+|.+.-+|..+|+.+........ .+. .+.. .+..++.++.+|.+..+|..++. ..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~---~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE---VA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC---Cc
Confidence 66778888899999999999988776542210 000 1111 35567788899999999998763 22
Q ss_pred EEeccCCcCeEE-EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCc
Q 010669 304 HTLKDHTAEVQA-VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEAL 380 (504)
Q Consensus 304 ~~~~~h~~~v~~-l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~ 380 (504)
-..... +.+.+ ... .+..++.++.+|.+.-+|..+|+.+.......... ... ..-+| .+..++.++.+|.
T Consensus 144 W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~~-~~~sP~v~~~~v~~~~~~g~ 216 (394)
T PRK11138 144 WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL---TLR-GESAPATAFGGAIVGGDNGR 216 (394)
T ss_pred ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc---ccc-CCCCCEEECCEEEEEcCCCE
Confidence 222211 12211 111 24567778889999999999999887765321100 000 00112 2335677788999
Q ss_pred EEEEEcCCCceeeeeeCCC--C-----CeEEEEEcC--CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669 381 VKIWDVKSQANVAKFDGHV--G-----AVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 381 I~iwd~~~~~~~~~~~~~~--~-----~i~~l~~s~--~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~ 450 (504)
+..+|..+++.+-.+.... + ....+.-+| .+..++.++.++ +..+|..+++.+....... ...+..
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~ 292 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFAV 292 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcEE
Confidence 9999999887665443110 0 011111122 234555666666 9999999988765543321 111222
Q ss_pred CCCCCEEEEEeCc--EEEEEe
Q 010669 451 DHSGSYLAVASAD--IRVYQV 469 (504)
Q Consensus 451 ~~~g~~l~~~~~d--i~vw~~ 469 (504)
.+..+++++.+ +..++.
T Consensus 293 --~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 293 --DGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred --ECCEEEEEcCCCeEEEEEC
Confidence 34455555555 555554
No 344
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.9e-07 Score=82.16 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=51.0
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 55 (504)
.|+++..+.++||-++ +|.+||-..|..||..+|+.|+||++|+-.|||.++-
T Consensus 42 hC~lt~~Pfe~PvC~~-dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F 94 (518)
T KOG0883|consen 42 HCSLTMLPFEDPVCTV-DGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKF 94 (518)
T ss_pred hceeccccccCccccc-CCcEEeeehhhHHHHHcCCCCCCCCccccccceeeee
Confidence 4999999999999995 8999999999999999999999999999999999985
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.002 Score=59.02 Aligned_cols=199 Identities=12% Similarity=0.211 Sum_probs=110.6
Q ss_pred EcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccC-CcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669 260 TLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TAEVQAVTVHATNKYFVTASLDNTWCFY 337 (504)
Q Consensus 260 ~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iw 337 (504)
.+.+-...+..++|.|+.+ ++++....+.|..++... ..+..+.-. .+..-+|++..++.++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 4556666799999999755 666777788887777643 344444322 3567889998777777766668999999
Q ss_pred ECCCCe------EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---Cceeeee--------eCCCC
Q 010669 338 DLSSGI------CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKF--------DGHVG 400 (504)
Q Consensus 338 d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~---~~~~~~~--------~~~~~ 400 (504)
++.... ....+.......++..+-.++|+|.++.|+++-...-..+|.++. ...+... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884321 112222111223556799999999877777777777777777754 2222111 11334
Q ss_pred CeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCc
Q 010669 401 AVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 401 ~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~d 463 (504)
.+..+.++|. |.+++.+.... |..+| .+++.+..+..... -...-.|+|+++|+..+++--+
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 6889999996 45555555555 88899 66777666655421 1246789999999776665444
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.20 E-value=0.0027 Score=59.94 Aligned_cols=229 Identities=19% Similarity=0.201 Sum_probs=133.9
Q ss_pred cCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE--------
Q 010669 233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH-------- 304 (504)
Q Consensus 233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------- 304 (504)
..++.|+.|..+| +++++.........+. +...|..+...++-+.|++-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999998 8999983332222222 233399999998777666554 4999999987532211000
Q ss_pred ---EeccCCcCeEEEE--EccCCCEEEEEeCCCeEEEEECCCC-----eEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669 305 ---TLKDHTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 305 ---~~~~h~~~v~~l~--~~p~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~ 374 (504)
........+...+ -...+...+.+.....|.+|..... +....+. -+..+..++|. ++.+++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~------lp~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS------LPDPPSSIAFL--GNKICV 153 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE------cCCCcEEEEEe--CCEEEE
Confidence 0111223444444 1223444444555568888887653 2333433 23578899998 556777
Q ss_pred EeCCCcEEEEEcCCCceeeeeeCC------------CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee--eeecCC
Q 010669 375 GTSEALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESSD 440 (504)
Q Consensus 375 g~~dg~I~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~--~~~~~~ 440 (504)
|..++ ..+.|+.++.....+... ..++..+... ++.+|++...-++ +.|. .|+..+ .+.-
T Consensus 154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~~~g~-fv~~-~G~~~r~~~i~W-- 227 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYDNIGV-FVNK-NGEPSRKSTIQW-- 227 (275)
T ss_pred EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEecceEE-EEcC-CCCcCcccEEEc--
Confidence 76554 778899876554333211 1234444444 4566654322222 2333 344333 2222
Q ss_pred CCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC
Q 010669 441 SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 441 ~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h 485 (504)
...+.++++ ...||++.+.+ |.||++ .+++.++++...
T Consensus 228 -~~~p~~~~~--~~pyli~~~~~~iEV~~~----~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSSNSIEVRSL----ETGELVQTIPLP 266 (275)
T ss_pred -CCchhEEEE--ECCEEEEECCCEEEEEEC----cCCcEEEEEECC
Confidence 235566666 45688888888 999999 778889988764
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.17 E-value=0.00022 Score=71.17 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=87.0
Q ss_pred CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 010669 309 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS 388 (504)
Q Consensus 309 h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~ 388 (504)
.......+.++|+|+++++ +.||...++.......... +.-..++|.+.+. +|+-..++.|.|+.--.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----------GSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----------EE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----------CceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 3345788999999999888 4577778887544433322 2346788998555 66766788899974323
Q ss_pred CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEE
Q 010669 389 QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVY 467 (504)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw 467 (504)
......+.. ...+..|-. |.+|...+.+.|.+||..+++.++.+... .|..+.|+++|.+++..+.+ +.|+
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp E-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred cccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCCeEEEE
Confidence 333233432 123555543 88888887777999999999999999763 48999999999999999988 8888
Q ss_pred Eeec
Q 010669 468 QVAS 471 (504)
Q Consensus 468 ~~~~ 471 (504)
+++.
T Consensus 171 ~~~~ 174 (443)
T PF04053_consen 171 KYNL 174 (443)
T ss_dssp EE-H
T ss_pred Eecc
Confidence 8743
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0021 Score=63.72 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=147.0
Q ss_pred EEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCCcce
Q 010669 227 VSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 227 ~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~ 302 (504)
..+++++.++ ..++...++.|.+.|..+........-.. ....++++++++.+..+.. ++++.+.|..+. ..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eE
Confidence 4677888877 55555566899999977777666554222 5678999999987776655 678888887765 34
Q ss_pred eEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC---
Q 010669 303 KHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--- 378 (504)
Q Consensus 303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d--- 378 (504)
......-..+ ..+++.|+|+.++.+. .++.|.+.|........ -..............+.+.|+|..+.+....
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 4443332234 8899999999766665 78899999977665553 1111011222345778999999966665443
Q ss_pred CcEEEEEcCCCceeeeeeCCCC-CeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCC-CCCeeEEEECC
Q 010669 379 ALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDS-ETPTNSVDFDH 452 (504)
Q Consensus 379 g~I~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~-~~~v~~i~~~~ 452 (504)
+.+...|..++.....-..-.. ....+.++|+|.++.+.... + +.+.|..+......+..... ...+..+++.+
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 5899999988776654221111 56778999999998888555 4 99999988777666554321 22344555544
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.16 E-value=0.00028 Score=74.32 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=97.8
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCCCcceeEEeccCCcC-eEEEEEcc-----CCCEEEEEeCCCeEEEEECCCCe-EEEEe
Q 010669 277 GDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGI-CLTQV 348 (504)
Q Consensus 277 ~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p-----~~~~l~s~s~dg~i~iwd~~~~~-~~~~~ 348 (504)
.++|+.. .....|.-.|+..+ +.+.....|... |..++-.. +....+.|-.+..+..||.+-.. .+..-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 3344433 34577888888886 667777666543 55554321 13356677788899999998643 21111
Q ss_pred ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEc
Q 010669 349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 427 (504)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~ 427 (504)
... .-......+|++-+.+| +||+|+.+|.||+||- .++. ...+.+-..+|.+|..+.||+||++.+..-+.+++.
T Consensus 570 ~~k-~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 570 QSK-QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ccc-ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 111 11334568888888887 5899999999999994 4433 334556678999999999999999888777777775
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=5.8e-05 Score=77.04 Aligned_cols=198 Identities=18% Similarity=0.202 Sum_probs=130.5
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce---
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC--- 302 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~--- 302 (504)
+++++|+|..-+|+.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.|.+|.....+..+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 67799999999999999999999999887777666778999999999999999999999999999998652211110
Q ss_pred ------------eEEec---------------cCCcCeE-EEEE-------------ccCCCEEEEEeCCCeEEEEECCC
Q 010669 303 ------------KHTLK---------------DHTAEVQ-AVTV-------------HATNKYFVTASLDNTWCFYDLSS 341 (504)
Q Consensus 303 ------------~~~~~---------------~h~~~v~-~l~~-------------~p~~~~l~s~s~dg~i~iwd~~~ 341 (504)
...+. +....+- -.-| .|+|..|+.++.+|+|+..|-..
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 00000 0000000 0001 34577888899999998887322
Q ss_pred CeEEEEeec-------------------------------CC-------------CC-----------------------
Q 010669 342 GICLTQVSD-------------------------------AG-------------TD----------------------- 354 (504)
Q Consensus 342 ~~~~~~~~~-------------------------------~~-------------~~----------------------- 354 (504)
. +...... .+ ..
T Consensus 222 ~-~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~ 300 (1416)
T KOG3617|consen 222 R-QRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL 300 (1416)
T ss_pred c-EEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh
Confidence 1 1111000 00 00
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------ceeeeee---CCCCCeEEEEEcCCCcEEEEEeCCcEEE
Q 010669 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-------ANVAKFD---GHVGAVTAISFSENGYYLATAAHDGVKL 424 (504)
Q Consensus 355 ~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-------~~~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d~v~v 424 (504)
.....++|+++...+..+..|...|.+.+|--... .....+. ...+.|+.+.|.|--..++..+...|.+
T Consensus 301 e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~l 380 (1416)
T KOG3617|consen 301 ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVL 380 (1416)
T ss_pred hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheee
Confidence 01245789999999999999999999999953221 1222332 2356899999998655555554444333
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=8.2e-07 Score=87.54 Aligned_cols=201 Identities=15% Similarity=0.258 Sum_probs=131.2
Q ss_pred ccceeEEEEeeCC--CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEe----CCCeEEEE
Q 010669 265 SKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTAS----LDNTWCFY 337 (504)
Q Consensus 265 ~~~v~~l~~s~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s----~dg~i~iw 337 (504)
...+.|+++.-+. ..++.|..+|.|.+-....... .......+|....++++|++- .+.|+.|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3446777765433 3688899999999988776422 122344578889999999984 45666653 25679999
Q ss_pred ECCCCe--EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcC-CCcE
Q 010669 338 DLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYY 413 (504)
Q Consensus 338 d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~g~~ 413 (504)
|+.++- +.......+ +......+++|..+.+++.+|.....+.++|+|... ....+ ....+..+..+| .+.|
T Consensus 135 di~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred ecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 998872 221111110 123456689999999999999999999999998432 22222 233567788888 7888
Q ss_pred EEEEeCCcEEEEE-cCCCcc-eeeeecCCC--CCCeeEEEECCCC-CEEEEEeCc---EEEEEee
Q 010669 414 LATAAHDGVKLWD-LRKLKN-FRSFESSDS--ETPTNSVDFDHSG-SYLAVASAD---IRVYQVA 470 (504)
Q Consensus 414 l~s~~~d~v~vwd-~~~~~~-~~~~~~~~~--~~~v~~i~~~~~g-~~l~~~~~d---i~vw~~~ 470 (504)
+++..++-|.+|| .++.+. +..+..... ...+..++|+|.. ..+++...| |++|++.
T Consensus 211 ~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8887744499999 555433 222221111 2248899999965 355666666 7777763
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=0.00079 Score=59.90 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=69.1
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeE-EEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC
Q 010669 234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTS-VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE 312 (504)
Q Consensus 234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 312 (504)
-|++++.|...|.+++.+.++|.....+..-. .|.+ ....+++.++..|+.|++....|..+. .++...+...+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~ 137 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGT 137 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCce
Confidence 36789999999999999999997777665322 2322 233568899999999999999998875 566665543333
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 010669 313 VQAVTVHATNKYFVTASLDNTWCFYDLSS 341 (504)
Q Consensus 313 v~~l~~~p~~~~l~s~s~dg~i~iwd~~~ 341 (504)
..+-+..|-...|+.+...|.+.--....
T Consensus 138 f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 138 FVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eccceecCCCceEEEEeccceEEEEccCC
Confidence 33444555334455555556554444443
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.00043 Score=69.15 Aligned_cols=178 Identities=13% Similarity=0.159 Sum_probs=96.7
Q ss_pred CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 010669 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (504)
Q Consensus 264 h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (504)
..-....+.++|+|+++++ +.||...||..... .... .+.-....|.+ .+.+++-...+.|.++.--+..
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 3345788999999998888 55678888873321 2211 24456788888 4456777778889996322222
Q ss_pred EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEE
Q 010669 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVK 423 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~ 423 (504)
....+.. +..+..+-. |.+|+..+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+.+.
T Consensus 101 ~~k~i~~------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~ 168 (443)
T PF04053_consen 101 VVKSIKL------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIY 168 (443)
T ss_dssp TT-----------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEE
T ss_pred cceEEcC------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEE
Confidence 2122221 112333332 8877777654 8999999999999998743 48999999999999999999888
Q ss_pred EEEcCCC-----------cceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEE
Q 010669 424 LWDLRKL-----------KNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRV 466 (504)
Q Consensus 424 vwd~~~~-----------~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~v 466 (504)
+++.... ..+..+... ...|.+.+|..+ -++++....++.
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d-~fiYtT~~~lkY 219 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED-CFIYTTSNHLKY 219 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT-EEEEE-TTEEEE
T ss_pred EEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC-EEEEEcCCeEEE
Confidence 7775433 022222221 357889999876 334433332444
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.013 Score=58.06 Aligned_cols=244 Identities=18% Similarity=0.168 Sum_probs=152.8
Q ss_pred eEEEEeccCCCEEEE-EeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCCccee
Q 010669 226 IVSLDIHYSKDVIAT-GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCK 303 (504)
Q Consensus 226 I~~~~~s~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~ 303 (504)
...+.+.+++..+.. -.....+.+.+................-..++.++.+.. .+....++.|.+.|.... ...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~ 109 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVL 109 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc---cee
Confidence 445667777753333 222224555554422222212211133456788887774 455555689999996654 333
Q ss_pred EEeccCCcCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCC
Q 010669 304 HTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEA 379 (504)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg 379 (504)
..... ......++++|+++.+..+.. ++++.+.|-.+++....... +. .+ ..++++|+|..+.+.. .++
T Consensus 110 ~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v----G~-~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 110 GSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV----GN-TP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred eEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec----CC-Cc-ceEEECCCCCeEEEEecCCC
Confidence 33321 125678999999987777665 68999999999988877542 11 22 8899999999666555 789
Q ss_pred cEEEEEcCCCceee-e---eeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669 380 LVKIWDVKSQANVA-K---FDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 451 (504)
Q Consensus 380 ~I~iwd~~~~~~~~-~---~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~ 451 (504)
.|.++|........ . ...-......+.++++|.++.+.... + +...|..++............ ....+.++
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~ 261 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVD 261 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeEC
Confidence 99999976655442 1 01112345678999999866665443 4 888888887766552222112 56778999
Q ss_pred CCCCEEEEEeCc---EEEEEeeccCccceeEEEccC
Q 010669 452 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 452 ~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~ 484 (504)
|+|.++.+.... +.+.|. ........+..
T Consensus 262 p~g~~~yv~~~~~~~V~vid~----~~~~v~~~~~~ 293 (381)
T COG3391 262 PAGKAAYVANSQGGTVSVIDG----ATDRVVKTGPT 293 (381)
T ss_pred CCCCEEEEEecCCCeEEEEeC----CCCceeeeecc
Confidence 999999888554 666665 44455554443
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.06 E-value=0.011 Score=55.92 Aligned_cols=245 Identities=15% Similarity=0.154 Sum_probs=142.4
Q ss_pred EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccCcc-------ceeEEEEeeCCCEEEEEe--CCCc
Q 010669 228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTGS--ADKT 288 (504)
Q Consensus 228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~s--~dg~ 288 (504)
.+.++|+++.+++++ ..-.|.+||..+-.....+.-..+ ....++++.|+++++... -...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 466789999887653 344699999998877665432211 123456777888766553 3456
Q ss_pred EEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
|.|-|+... +.+..+.. ..+..+--.+ +.-|.+-|.||.+....+. .|+................+..-++..
T Consensus 120 VtVVDl~~~---kvv~ei~~--PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 120 VTVVDLAAK---KVVGEIDT--PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEETTTT---EEEEEEEG--TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred EEEEECCCC---ceeeeecC--CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 788888764 44444431 1223332222 3468888899999998887 455443322111112222233445555
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcee--eeeeC----------CCCCeEEEEEcCCCcEEEEEe--------CC-c--EEE
Q 010669 368 DGLILGTGTSEALVKIWDVKSQANV--AKFDG----------HVGAVTAISFSENGYYLATAA--------HD-G--VKL 424 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~~~~--~~~~~----------~~~~i~~l~~s~~g~~l~s~~--------~d-~--v~v 424 (504)
.+..++.-+.+|.|+-.|+...... ..+.- -.+.-.-+++++....|++.- .+ + |.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 5555555678999999888665421 12210 112344477776544444321 12 2 899
Q ss_pred EEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC-c--EEEEEeeccCccceeEEEccCC
Q 010669 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDL 485 (504)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h 485 (504)
||+.+.+.+..+... .++.+|..+.+.+ +|++.+. + +.+||. .+++.+.++.+.
T Consensus 274 ~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~----~tGk~~~~~~~l 331 (342)
T PF06433_consen 274 YDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDA----ATGKLVRSIEQL 331 (342)
T ss_dssp EETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEET----TT--EEEEE---
T ss_pred EECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeC----cCCcEEeehhcc
Confidence 999999999999873 4688999998775 6655443 3 999998 778888888764
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.04 E-value=0.0011 Score=65.41 Aligned_cols=229 Identities=17% Similarity=0.154 Sum_probs=126.6
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC----------------------------------------cceeEEe
Q 010669 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN----------------------------------------YDCKHTL 306 (504)
Q Consensus 267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~----------------------------------------~~~~~~~ 306 (504)
.|+.+.|.++..-|++|...|.|.||.+...+. +.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478888888877888888889988886432211 1122223
Q ss_pred ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC---CCCCCCCeEEEEECC-----CC---CEEEEE
Q 010669 307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---TDGRPEGYTSAAFHP-----DG---LILGTG 375 (504)
Q Consensus 307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p-----dg---~~l~~g 375 (504)
....++|++++.+ +=-+++.|..+|.+.|.|++....+..-.... .......++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3456889999987 55699999999999999999888777643221 112345678888763 44 578999
Q ss_pred eCCCcEEEEEcC--C-Ccee----eeeeCCCCCeEEEE-EcCC---------------------CcEEEEEeCCcEEEEE
Q 010669 376 TSEALVKIWDVK--S-QANV----AKFDGHVGAVTAIS-FSEN---------------------GYYLATAAHDGVKLWD 426 (504)
Q Consensus 376 ~~dg~I~iwd~~--~-~~~~----~~~~~~~~~i~~l~-~s~~---------------------g~~l~s~~~d~v~vwd 426 (504)
+..|.+.+|.+- . +.-. .....+.++|..|. |+.+ ..++++++...++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 2111 11123556666554 3211 1266777777799999
Q ss_pred cCCCcceeeeecCCCCCCeeEEEEC-----CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCC--CCCceeEEEEe
Q 010669 427 LRKLKNFRSFESSDSETPTNSVDFD-----HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS--GTGAASFLFLF 497 (504)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~i~~~-----~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~--~~~~v~~l~~~ 497 (504)
..+.+........ ......+.+- ..+..|++-..+ +++|.+ ...+.+..+.-.. +...+....|.
T Consensus 242 ~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL----P~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 242 PPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL----PSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET----TT--EEEEEE-SS---HHHHTT-EE-
T ss_pred CCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEEC----CCchHhhcccCCCccccccccccEEC
Confidence 9887766554421 1233344442 355666666666 999998 6666666665431 12234555566
Q ss_pred ecCcc
Q 010669 498 VLGQT 502 (504)
Q Consensus 498 ~~g~~ 502 (504)
.+|.+
T Consensus 316 ~~Gdi 320 (395)
T PF08596_consen 316 RNGDI 320 (395)
T ss_dssp TTS-E
T ss_pred CCCCE
Confidence 66653
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.00 E-value=0.0061 Score=62.59 Aligned_cols=231 Identities=13% Similarity=0.164 Sum_probs=130.5
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEcccCccc-----ee-EEEEeeCCCEEEEEe---------CCCcEEEEeCCCCCCc
Q 010669 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VT-SVKFVTEGDLFLTGS---------ADKTVRVWQGSEDGNY 300 (504)
Q Consensus 236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~-~l~~s~~~~~l~s~s---------~dg~i~iwd~~~~~~~ 300 (504)
..++.++.+|.|+-+|..+|+.+..+...... +. ...+ .+..++.++ .+|.+..+|..++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-- 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-- 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCc--
Confidence 67778888999999999999988776533221 11 1112 224455553 36788888888763
Q ss_pred ceeEEeccC-C-------------------cCe-EEEEEccCCCEEEEEeCCC------------------eEEEEECCC
Q 010669 301 DCKHTLKDH-T-------------------AEV-QAVTVHATNKYFVTASLDN------------------TWCFYDLSS 341 (504)
Q Consensus 301 ~~~~~~~~h-~-------------------~~v-~~l~~~p~~~~l~s~s~dg------------------~i~iwd~~~ 341 (504)
..-.+... . ..| ....+.+.+..++.++.++ .+.-+|..+
T Consensus 187 -~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 -LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred -eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 22222110 0 011 1234444567778787665 799999999
Q ss_pred CeEEEEeecCCCC-----CCCCCeEEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCc
Q 010669 342 GICLTQVSDAGTD-----GRPEGYTSAAFH-PDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 412 (504)
Q Consensus 342 ~~~~~~~~~~~~~-----~~~~~v~~~~~~-pdg~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~ 412 (504)
|+..-.+...... ....++ -.... -+|. .+++++.+|.+..+|.++++.+-..... ...+..+| +
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~-~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~- 339 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPS-LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G- 339 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCe-EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-
Confidence 9988776532110 000011 01111 1343 6788889999999999999988765421 11233333 2
Q ss_pred EEEEE------------------eCCc-EEEEEcCCCcceeeeecCCCC------CCe--eEEEECCCCCEEEEEeCc--
Q 010669 413 YLATA------------------AHDG-VKLWDLRKLKNFRSFESSDSE------TPT--NSVDFDHSGSYLAVASAD-- 463 (504)
Q Consensus 413 ~l~s~------------------~~d~-v~vwd~~~~~~~~~~~~~~~~------~~v--~~i~~~~~g~~l~~~~~d-- 463 (504)
.++.+ ..++ |.-.|+.+++.+-........ .+. ..+. ..+.+|++++.+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~ 417 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGY 417 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCe
Confidence 22221 1234 888888888877666543110 111 1122 256778888877
Q ss_pred EEEEEeeccCccceeEEEcc
Q 010669 464 IRVYQVASVKADWNCIKTFP 483 (504)
Q Consensus 464 i~vw~~~~~~~~~~~i~~~~ 483 (504)
++.+|. ++++.+-+++
T Consensus 418 l~ald~----~tG~~lW~~~ 433 (488)
T cd00216 418 FRAFDA----TTGKELWKFR 433 (488)
T ss_pred EEEEEC----CCCceeeEEE
Confidence 666665 4455554443
No 358
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=5.2e-06 Score=72.01 Aligned_cols=56 Identities=27% Similarity=0.422 Sum_probs=49.2
Q ss_pred CccccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccCCC
Q 010669 1 MNCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGK 57 (504)
Q Consensus 1 ~~c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 57 (504)
++|+++-....+ .|+.| ||+||.+.|.||+|..-+.||+||++|+..|||++|.+.
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~-sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGG 281 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRP-SGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGG 281 (303)
T ss_pred eecccchhhhcCccceEEecc-CCcEeeHHHHHHhccccccccCCCCcCcccceEeeeccc
Confidence 479988777555 47785 999999999999999999999999999999999998743
No 359
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=5e-06 Score=80.20 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=44.6
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDI 50 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 50 (504)
+.|+||.+.+.+||+++ |||+||+.||..|+...+.||++++++....|
T Consensus 27 l~C~IC~d~~~~Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 27 LRCHICKDFFDVPVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred cCCCcCchhhhCccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 57999999999999996 99999999999999998899999998875544
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00064 Score=67.68 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=114.2
Q ss_pred CCCeEEEEeccCCCEEEEE---eCC-CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEE--eCC
Q 010669 223 KPGIVSLDIHYSKDVIATG---GVD-TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVW--QGS 295 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg---~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iw--d~~ 295 (504)
...+..-+|+|++..++.. ... ..++++++.+++....+. ..+.-..-.|+|||+.|+ +...||...|| |+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 4567777899998865443 222 468999998876544443 223344568999998755 55567766555 554
Q ss_pred CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
... ...+..-.+.-..=.|+|+|++++-.+. .| .|.++|.+.+........ . ..-..-.|+|||+++
T Consensus 271 ~~~----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~----~--~~~~~p~~SpdG~~i 340 (425)
T COG0823 271 GKN----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS----G--GGNSNPVWSPDGDKI 340 (425)
T ss_pred CCc----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc----C--CCCcCccCCCCCCEE
Confidence 432 2223333333346678999998877655 44 477778777655332221 1 112277899999998
Q ss_pred EEEeCC-Cc--EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669 373 GTGTSE-AL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420 (504)
Q Consensus 373 ~~g~~d-g~--I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d 420 (504)
+..+.. |. |.+.|+.++..+..+. +......-.|.+||..+...+..
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 887643 44 6667776665443333 33445566788898877665543
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.95 E-value=0.011 Score=58.16 Aligned_cols=232 Identities=17% Similarity=0.168 Sum_probs=125.3
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-ccc-------C---------ccceeEEEEeeCCCEEEEEeC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSG-------H---------SKKVTSVKFVTEGDLFLTGSA 285 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~-------h---------~~~v~~l~~s~~~~~l~s~s~ 285 (504)
...+....|||+|+.++... ++.|++++..++...+. ..+ - -+.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45678899999999998876 57899999877744332 122 0 112356889999998876643
Q ss_pred C-Cc-----------------------------------EEEEeCCCCCCcceeEEe---ccCCcCeEEEEEccCCCEEE
Q 010669 286 D-KT-----------------------------------VRVWQGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFV 326 (504)
Q Consensus 286 d-g~-----------------------------------i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~ 326 (504)
| .. +.|+|+.++.. ..+... ..-...+..+.|.++++.|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~-~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT-TELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC-CEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE-EEeeeccccCCCccCcccceecCCCcEEE
Confidence 2 22 22333433211 011111 12234577888988888333
Q ss_pred E--EeCCC---eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC-CCC-CEEEEEeCCCcEE--EEEcCCCceeeeeeC
Q 010669 327 T--ASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PDG-LILGTGTSEALVK--IWDVKSQANVAKFDG 397 (504)
Q Consensus 327 s--~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pdg-~~l~~g~~dg~I~--iwd~~~~~~~~~~~~ 397 (504)
. .+.+. .+.++|..++......... ..+.-.......|. +++ .++.....+|.-+ +++...+. ...+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc
Confidence 3 33333 4667788776554444321 11222233455554 544 4555555777544 45554444 334443
Q ss_pred CCCCeEE-EEEcCCCcEE-EEEeCC----c-EEEEEcCCCcceeeeecCCCCCCe-eEEEECCCCCEEEEEe
Q 010669 398 HVGAVTA-ISFSENGYYL-ATAAHD----G-VKLWDLRKLKNFRSFESSDSETPT-NSVDFDHSGSYLAVAS 461 (504)
Q Consensus 398 ~~~~i~~-l~~s~~g~~l-~s~~~d----~-v~vwd~~~~~~~~~~~~~~~~~~v-~~i~~~~~g~~l~~~~ 461 (504)
..-.|+. +.|++++..| +++..+ . |+.-++..+..+..+... ... ..+.|+|+|++++...
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSSEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCCEEEEEE
Confidence 4456755 6778876554 455442 2 666666623334444433 222 5899999999988654
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0059 Score=58.00 Aligned_cols=221 Identities=13% Similarity=0.124 Sum_probs=130.1
Q ss_pred EeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-
Q 010669 230 DIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK- 307 (504)
Q Consensus 230 ~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~- 307 (504)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++.. -+.+++.+.+..........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 3666666 5555566788888988766432 222 2233455554444545555533 35667765442211111111
Q ss_pred cC-CcCeEEEEEccCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 308 DH-TAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 308 ~h-~~~v~~l~~~p~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
+. ....+.+...|+|.+.++... -|.++.+|. .+.....+. .+-..-+.++||||++.|...
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-----~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-----DDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-----CcEEecCceEECCCCCEEEEE
Confidence 11 134567888999887665443 133444443 344343332 222345789999999877776
Q ss_pred eC-CCcEEEEEcCC--C----ce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCC--cEEEEEcCCCcceeeeecCCCCCCe
Q 010669 376 TS-EALVKIWDVKS--Q----AN-VAKFDGHVGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPT 445 (504)
Q Consensus 376 ~~-dg~I~iwd~~~--~----~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~~v 445 (504)
.. .+.|.-|++.. + +. ...+..+.+..-.++...+|.+.+++..+ .|.+|+.. ++.+..+..+ ...+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~ 257 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRP 257 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCC
Confidence 55 47888887752 1 11 22223345677788888899888655555 39999988 8888888876 3567
Q ss_pred eEEEEC-CCCCEEEEEeCc
Q 010669 446 NSVDFD-HSGSYLAVASAD 463 (504)
Q Consensus 446 ~~i~~~-~~g~~l~~~~~d 463 (504)
++++|- ++.+.|++.+..
T Consensus 258 t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 258 TNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ccceEeCCCcCEEEEEecC
Confidence 777774 345555554433
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00084 Score=66.83 Aligned_cols=195 Identities=12% Similarity=0.125 Sum_probs=118.0
Q ss_pred CceEEEcccCccceeEEEEeeCCCEEEEE---eCC-CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEE-e
Q 010669 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTG---SAD-KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-S 329 (504)
Q Consensus 255 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---s~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s 329 (504)
+.....+......+..-+|+|++..++-. ... ..+.++++.++.. ..+..+.++ -..-.|+|||+.|+.+ .
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~---~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGN---NGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCc---cCCccCCCCCCEEEEEEC
Confidence 44444444445567777889888764433 222 3588999988643 233333333 4466899999876655 4
Q ss_pred CCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeCCCCCeEE
Q 010669 330 LDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFDGHVGAVTA 404 (504)
Q Consensus 330 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~ 404 (504)
.||. |.++|+.++.... +.. ....-..=.|+|||+.++..+. .| .|.++|...+.. ..+....+.-..
T Consensus 258 rdg~~~iy~~dl~~~~~~~-Lt~-----~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLPR-LTN-----GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred CCCCccEEEEcCCCCccee-ccc-----CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 5664 7777888777443 321 1112235679999998877654 44 466666655443 333323233337
Q ss_pred EEEcCCCcEEEEEeCC--c--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 405 ISFSENGYYLATAAHD--G--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 405 l~~s~~g~~l~s~~~d--~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
-.|+|||.+|+..+.. . |.+.|+.++...+.+.. ......-.|.++|..+...+..
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence 7899999999887742 2 77777776654444433 2334456788888877766544
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.0087 Score=56.84 Aligned_cols=211 Identities=11% Similarity=0.064 Sum_probs=121.1
Q ss_pred EEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 010669 272 KFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350 (504)
Q Consensus 272 ~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (504)
.|.++.. ++.+--..+.|.-|+..++ ....+. +.+.+.++..-..+..|+++.. .+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g----~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG----KKRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC----ceEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 3445444 3444455677777877653 222222 2233444444334445555533 456677766655333332
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669 351 AGTDGRPEGYTSAAFHPDGLILGTGTS-----------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (504)
Q Consensus 351 ~~~~~~~~~v~~~~~~pdg~~l~~g~~-----------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~ 419 (504)
..........+.+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 222233356778899999987765433 133444443 45556556655666788999999998888876
Q ss_pred C-c-EEEEEcCC--Ccc---eeeeecCCCCCCeeEEEECCCCCEEEEEeC---cEEEEEeeccCccceeEEEccCCCCCC
Q 010669 420 D-G-VKLWDLRK--LKN---FRSFESSDSETPTNSVDFDHSGSYLAVASA---DIRVYQVASVKADWNCIKTFPDLSGTG 489 (504)
Q Consensus 420 d-~-v~vwd~~~--~~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~---di~vw~~~~~~~~~~~i~~~~~h~~~~ 489 (504)
. + |.-|++.. +.. ...+......+..-.++.+.+|.+.+++.. .|.+|+- .++.+..+... ..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP--~~ 255 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLP--VK 255 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC-----CCcEEEEEECC--CC
Confidence 5 3 77777652 211 111222112456677888899988854443 3777874 47777777654 34
Q ss_pred ceeEEEEe
Q 010669 490 AASFLFLF 497 (504)
Q Consensus 490 ~v~~l~~~ 497 (504)
.+++++|-
T Consensus 256 ~~t~~~Fg 263 (307)
T COG3386 256 RPTNPAFG 263 (307)
T ss_pred CCccceEe
Confidence 56666554
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.76 E-value=0.0063 Score=63.31 Aligned_cols=237 Identities=14% Similarity=0.228 Sum_probs=128.4
Q ss_pred ccCCCEEEEEeCCC------cEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCC------CcEEEEeCCCCC
Q 010669 232 HYSKDVIATGGVDT------NAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQGSEDG 298 (504)
Q Consensus 232 s~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~d------g~i~iwd~~~~~ 298 (504)
+..+.+++.||.++ .+..||..++.....-.- ....-.+++.. ++.+.++||.| .++-.||...+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~- 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN- 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC-
Confidence 33466778888774 577888877643322211 22223344443 56788889988 35678888774
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe-----EEEEECCCCeEEEEeecCCCCCCCCCeEEE-EECCCCCEE
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT-----WCFYDLSSGICLTQVSDAGTDGRPEGYTSA-AFHPDGLIL 372 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~~pdg~~l 372 (504)
.|.....+...........+ +|...++|+.||. +..||..+.+-...-. ........ ...-+|.+.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------MLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC------CCcceeeeEEEEECCEEE
Confidence 35444444332222222222 6888999999874 7778877664322211 00112222 222368888
Q ss_pred EEEeCCC------cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc------EEEEEcCCCcceeeeec
Q 010669 373 GTGTSEA------LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLKNFRSFES 438 (504)
Q Consensus 373 ~~g~~dg------~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~------v~vwd~~~~~~~~~~~~ 438 (504)
++|+.++ ++..||..+++ .+..+..-........+ ++.+.+.|+.++ |..||..+.+-...-..
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 8888654 56788887653 22222222222222333 778888887664 78899887654332111
Q ss_pred CCCCCCeeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeEEEccC
Q 010669 439 SDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 439 ~~~~~~v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i~~~~~ 484 (504)
......+..+.+ ++...++|+.| +..||- ...+|........
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~~~~ 558 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTEPES 558 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCCccc
Confidence 111122222222 45666667665 566654 3467887776433
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0016 Score=68.77 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=131.1
Q ss_pred CEEEEE-eCCCcEEEEcCCCCceEEEcccCccc-eeEEEEee-----CCCEEEEEeCCCcEEEEeCCCCCCcceeEE-e-
Q 010669 236 DVIATG-GVDTNAVLFDRPSGQIVTTLSGHSKK-VTSVKFVT-----EGDLFLTGSADKTVRVWQGSEDGNYDCKHT-L- 306 (504)
Q Consensus 236 ~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~- 306 (504)
++|+.. .....|+-.|++.|+.+..++.|... |..++=.. +....+.|-.++.+..||++-.++ .++.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence 444433 35577999999999999999877654 55553221 133467788888999999987542 22211 1
Q ss_pred -ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669 307 -KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385 (504)
Q Consensus 307 -~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd 385 (504)
........|++-..+| +||+|+.+|.|++||-- |+.-++. ..+-..+|..++.+.||+++++.+. ..|.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~----lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTA----LPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhc----CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 1233456677666444 79999999999999943 3222222 2244579999999999999877654 5566776
Q ss_pred cC--CCc----------------e---eeeeeC-C--------CC--CeEEEEEcC----CCcEEEEEeCCcEEEEEcCC
Q 010669 386 VK--SQA----------------N---VAKFDG-H--------VG--AVTAISFSE----NGYYLATAAHDGVKLWDLRK 429 (504)
Q Consensus 386 ~~--~~~----------------~---~~~~~~-~--------~~--~i~~l~~s~----~g~~l~s~~~d~v~vwd~~~ 429 (504)
.. .++ + ...+.. | .. ..+...|+. ....|++++..-+.+|++++
T Consensus 646 t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 646 TLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHH
Confidence 52 110 0 011111 1 11 223445542 23556665544499999874
Q ss_pred Cc----ceeeeecCCCCCCee--EEEECCCCCEEEEEeCcEEEEEe
Q 010669 430 LK----NFRSFESSDSETPTN--SVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 430 ~~----~~~~~~~~~~~~~v~--~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
-. ....+... ...|. ...|..+.+++++--+||.+-..
T Consensus 726 V~~g~~~~Y~ikry--~~~V~~dnF~fg~d~~vival~~dV~m~~~ 769 (794)
T PF08553_consen 726 VKRGKKDPYQIKRY--DENVVADNFKFGSDKNVIVALPNDVNMVKK 769 (794)
T ss_pred HhCCCCCceEEEEc--CCceEEccceeCCCCcEEEEccchhhhhhh
Confidence 22 22223222 23343 35566666666666666555543
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.68 E-value=0.028 Score=57.81 Aligned_cols=199 Identities=13% Similarity=0.144 Sum_probs=117.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCcc------cee--EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------KVT--SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~------~v~--~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (504)
+..++.++.++.|+-+|..+|+.+..+..... .+. .+... ++..++.++.+|.|..+|..++ +.+-.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG---~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG---KQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC---CEeeee
Confidence 45667777889999999999988776653322 010 11111 2267888889999999999886 333333
Q ss_pred ccCCcC--eEEEEEcc--CCCEEEEEe---------CCCeEEEEECCCCeEEEEeecCCCCC--C--------------C
Q 010669 307 KDHTAE--VQAVTVHA--TNKYFVTAS---------LDNTWCFYDLSSGICLTQVSDAGTDG--R--------------P 357 (504)
Q Consensus 307 ~~h~~~--v~~l~~~p--~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~--------------~ 357 (504)
...... -..+.-+| .+..++.++ .+|.+.-+|..+|+............ . .
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 221110 00111111 124455553 36889999999999887765321100 0 0
Q ss_pred CCeEEEEECCCCCEEEEEeCCC------------------cEEEEEcCCCceeeeeeC--CCC----CeEEEEEc----C
Q 010669 358 EGYTSAAFHPDGLILGTGTSEA------------------LVKIWDVKSQANVAKFDG--HVG----AVTAISFS----E 409 (504)
Q Consensus 358 ~~v~~~~~~pdg~~l~~g~~dg------------------~I~iwd~~~~~~~~~~~~--~~~----~i~~l~~s----~ 409 (504)
..-...++.+.+..+++++.++ .|.-+|..+++.+-.+.. |.. ......+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 0011345555567777777665 699999999998776642 210 00001111 1
Q ss_pred CCc---EEEEEeCCc-EEEEEcCCCcceeeee
Q 010669 410 NGY---YLATAAHDG-VKLWDLRKLKNFRSFE 437 (504)
Q Consensus 410 ~g~---~l~s~~~d~-v~vwd~~~~~~~~~~~ 437 (504)
+|. .++.++.++ +..+|.++++.+....
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 343 577777777 9999999999877654
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00024 Score=70.64 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcccee-EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
...|.-+.|+|.-+++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||++|+.|-.||+|++.|+..+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-- 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-- 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence 3468899999999999999999999999887 777888887777777 999999999999999999999999998642
Q ss_pred eeEEeccCCcCeEEEEEc
Q 010669 302 CKHTLKDHTAEVQAVTVH 319 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~ 319 (504)
.......-...|.++.|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 111112234556677675
No 369
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.64 E-value=9.9e-05 Score=49.30 Aligned_cols=44 Identities=32% Similarity=0.577 Sum_probs=39.6
Q ss_pred ccccCCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 010669 2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLT 46 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~ 46 (504)
.|.|..+.+.++++.| +||. |...++.++++...+||+.+++++
T Consensus 4 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 4 ECPICFENPRDVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp B-TTTSSSBSSEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCccCCccCCceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5999999999999997 9999 999999999998899999998865
No 370
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.6e-05 Score=74.76 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=49.3
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc-----CCCCCCCCCCCCCccccccC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-----GKCPVTGEPLTMDDIVPIKT 55 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~ 55 (504)
|.|+||.+.|.-|++|- |||+||=.||.+|+... +.||+|+..+++-||.||--
T Consensus 187 ~~CPICL~~~~~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CcCCcccCCCCcccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 57999999999999995 99999999999999865 57999999999999988854
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.63 E-value=0.022 Score=55.19 Aligned_cols=173 Identities=18% Similarity=0.196 Sum_probs=105.5
Q ss_pred cEEEEcCCCCceEEEccc-CccceeEEEEee---C----CCEEEEEeC----------CCcEEEEeCCCC----CCccee
Q 010669 246 NAVLFDRPSGQIVTTLSG-HSKKVTSVKFVT---E----GDLFLTGSA----------DKTVRVWQGSED----GNYDCK 303 (504)
Q Consensus 246 ~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~---~----~~~l~s~s~----------dg~i~iwd~~~~----~~~~~~ 303 (504)
.|++.|..+.+.+.++.- ....+++++... + ..+|+.|.. .|.|.++++... .....+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888877777666542 233455554432 1 456776642 288999999873 122333
Q ss_pred EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 382 (504)
Q Consensus 304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~ 382 (504)
... ...++|++++-. .+. ++.+ .++.|.+|++...+ ....-.. .....+.++... ++++++|.....+.
T Consensus 83 ~~~-~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~----~~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 83 HST-EVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFY----DSPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEE-EESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEE-eecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhhee----cceEEEEEEecc--ccEEEEEEcccCEE
Confidence 332 346889999876 444 4443 35799999998887 4433321 112245555554 56999999888888
Q ss_pred EEEcCC-Cceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669 383 IWDVKS-QANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 428 (504)
Q Consensus 383 iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~ 428 (504)
++..+. +..+..+. .....++++.|-+++..++.+..++ +.++...
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 886543 22233322 2344688999986667888888888 8888775
No 372
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.61 E-value=6.7e-05 Score=47.72 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.6
Q ss_pred cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC
Q 010669 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG 36 (504)
Q Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (504)
|+|..+++++||..+ .||+|.+++|++|.++.+
T Consensus 1 CpiC~~~~~~Pv~l~-CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLP-CGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-S-SSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccC-CcCHHHHHHHHHHHHccC
Confidence 899999999999995 999999999999998663
No 373
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.59 E-value=8.1e-05 Score=47.31 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=21.7
Q ss_pred cccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHhc
Q 010669 3 CSISGEVPEE----PVVSKNSGLLFEKRLIERHILDY 35 (504)
Q Consensus 3 c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 35 (504)
|+|+-| +.+ |++-+ +||+|.|.+|++.++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 777 99997 99999999999999965
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.57 E-value=0.041 Score=52.11 Aligned_cols=207 Identities=17% Similarity=0.141 Sum_probs=123.4
Q ss_pred EEEeccCCCEEEEEeC--CCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 228 SLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 228 ~~~~s~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
.+.++.||+++++... -..|.|.|+..++.+..+.-. + +..+ -| .++-+.+-+.||.+.-..+...+......
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 3567888887766533 346888999988888777522 1 2222 23 23458888999999999888655432111
Q ss_pred --EeccCCcCeE-EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE--eecCC-----CCCCCCCeEEEEECCCCCEEEE
Q 010669 305 --TLKDHTAEVQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ--VSDAG-----TDGRPEGYTSAAFHPDGLILGT 374 (504)
Q Consensus 305 --~~~~h~~~v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~-----~~~~~~~v~~~~~~pdg~~l~~ 374 (504)
.|.....++. .-.+...+..++..+.+|.|+-.|+........ +.... ..-.++...-+++|+..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1111122222 223344555666688999999999876653222 11100 1112344566888885554444
Q ss_pred Ee---CCC-------cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCc-EEEEEe-CCc-EEEEEcCCCcceeeeecC
Q 010669 375 GT---SEA-------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGY-YLATAA-HDG-VKLWDLRKLKNFRSFESS 439 (504)
Q Consensus 375 g~---~dg-------~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~~-~d~-v~vwd~~~~~~~~~~~~~ 439 (504)
-- .+| .|.+||+.+++.+.++.. ..++.+|..+.+.. +|++.+ .++ +.+||..+++.++++...
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 21 111 488899999999998873 24688999998765 665544 456 999999999999988764
No 375
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.047 Score=54.59 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=90.7
Q ss_pred CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-------EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe-CC
Q 010669 224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ-GS 295 (504)
Q Consensus 224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd-~~ 295 (504)
+.|.++.|+.+.+++ +-..||.+++||+. |+. +....-....+....+..+|-.+++ .++.+.+.+ ..
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence 689999998865544 55689999999986 333 1111111122222333334533333 334443332 22
Q ss_pred CCCCcceeEEecc-----CCc-CeEE-EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669 296 EDGNYDCKHTLKD-----HTA-EVQA-VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368 (504)
Q Consensus 296 ~~~~~~~~~~~~~-----h~~-~v~~-l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd 368 (504)
..........+.. |.. .... ..++.+....+....++.+.+.+-...+. + ...+++..+++||+
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i------~~~~~i~~iavSpn 227 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I------DSDGPIIKIAVSPN 227 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c------cCCCCeEEEEECCC
Confidence 1100000001110 000 0000 22333444444444555555443222111 1 12357999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeCC-CCCeEEEEEcCCC
Q 010669 369 GLILGTGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENG 411 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g 411 (504)
|+++|.-..+|.+.+.+..-.+....+... ......+.|+-+.
T Consensus 228 g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 228 GKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 999999999999999887655666666533 3456677776543
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.55 E-value=0.081 Score=50.04 Aligned_cols=262 Identities=9% Similarity=0.084 Sum_probs=123.6
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc--C---ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--H---SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h---~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~ 297 (504)
...+..|.|..+..-+++|. .|.|. -....|+.-..... . .-...++.|.. ...+++ +..| +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEecCCC
Confidence 45789999996566666654 55442 22233333222211 1 12356777753 334444 4444 334444455
Q ss_pred CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
..+..+..-..-.+....+....++..++ ++..|.|+. ..+.|+.-..+.. .....+..+.-++||.+++++..
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc
Confidence 55554432111223334444444443333 344455433 2334444333322 22356888999999999999877
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEc-CCCcceee--eecCCCCCCeeEEEECCC
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL-RKLKNFRS--FESSDSETPTNSVDFDHS 453 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~-~~~~~~~~--~~~~~~~~~v~~i~~~~~ 453 (504)
.....-||--...-...-......|..|.|+|++.+.+.+ .++ |++=+. ........ .........+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 6666778754321111112245689999999998876655 555 777662 22222111 111112345889999999
Q ss_pred CCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 454 g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
+...++|+... +|.-..+.++|+.......- .+.+..+.|...
T Consensus 244 ~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~--~~n~~~i~f~~~ 286 (302)
T PF14870_consen 244 NEIWAVGGSGT-LLVSTDGGKTWQKDRVGENV--PSNLYRIVFVNP 286 (302)
T ss_dssp S-EEEEESTT--EEEESSTTSS-EE-GGGTTS--SS---EEEEEET
T ss_pred CCEEEEeCCcc-EEEeCCCCccceECccccCC--CCceEEEEEcCC
Confidence 88888777763 33334445788877765544 567888888765
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0042 Score=60.88 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=97.1
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-------EEEEEeCCCeEEEEECCCCeE--E
Q 010669 276 EGDL-FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSSGIC--L 345 (504)
Q Consensus 276 ~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------~l~s~s~dg~i~iwd~~~~~~--~ 345 (504)
+.++ |.++..-..++-.|++.+ +.+....-|.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-... +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 4444 344555566777788776 56666666655 77777877653 234566688899999874322 1
Q ss_pred EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEE
Q 010669 346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKL 424 (504)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~v 424 (504)
...... .-.......|++-..+| ++++|+.+|.|++||- .+. ...-+.+-..+|..|..+.+|.+|+..+..-+.+
T Consensus 420 ~~~q~k-qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 420 AVVQSK-QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred eeeecc-ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 111111 11223446677766666 6889999999999997 443 3345677788999999999999998887666666
Q ss_pred EEcC
Q 010669 425 WDLR 428 (504)
Q Consensus 425 wd~~ 428 (504)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 6654
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00054 Score=68.22 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE-EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT-AISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 435 (504)
Q Consensus 358 ~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~ 435 (504)
..+.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.|+.|-.|| |++.|..++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 468889999999999999999999999887 777888886777777 999999999999999999 99999999988777
Q ss_pred eecCCCCCCeeEEEECC
Q 010669 436 FESSDSETPTNSVDFDH 452 (504)
Q Consensus 436 ~~~~~~~~~v~~i~~~~ 452 (504)
..... ...|.++.|++
T Consensus 100 ~~~s~-e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSV-ETDISKGIWDR 115 (665)
T ss_pred ccccc-ccchheeeccc
Confidence 43322 45778888863
No 379
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.53 E-value=0.016 Score=56.19 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=90.5
Q ss_pred CCEEEEEeC----------CCcEEEEcCCCC----ceEEEc--ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 235 KDVIATGGV----------DTNAVLFDRPSG----QIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 235 ~~~l~sg~~----------dg~i~vwd~~~~----~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
..++++|.. .|.|.+|++... ..+..+ ....++|++++-. ++. |+.+. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 457777753 288999998874 122222 2356889988765 444 44443 4789999998854
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~ 377 (504)
.+.....+.. ...+.++... +++++.|+....+.++..+. +..+..+.. +.....++++.|-++++.++++..
T Consensus 119 ~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 119 TLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp SEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEET
T ss_pred cchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEcC
Confidence 2233333322 2356666655 67999999888888775443 332333331 123456889999877779999999
Q ss_pred CCcEEEEEcC
Q 010669 378 EALVKIWDVK 387 (504)
Q Consensus 378 dg~I~iwd~~ 387 (504)
+|.|.++...
T Consensus 193 ~gnl~~l~~~ 202 (321)
T PF03178_consen 193 DGNLFVLRYN 202 (321)
T ss_dssp TSEEEEEEE-
T ss_pred CCeEEEEEEC
Confidence 9999999875
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.48 E-value=0.11 Score=50.16 Aligned_cols=221 Identities=14% Similarity=0.055 Sum_probs=108.7
Q ss_pred EeccCCCEEEEEe-CCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669 230 DIHYSKDVIATGG-VDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306 (504)
Q Consensus 230 ~~s~~~~~l~sg~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 306 (504)
+|.++|+.|+.++ .|| .+++.|+.+++..+--.+.........++++++.++-...+..|+-.|+.+.. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~- 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYE- 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEE-
Confidence 5678887555444 454 46677888887655444322333456677888877655556688888888752 123333
Q ss_pred ccCCcCeEEEEEc--cCCCEEEEEe----------------------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669 307 KDHTAEVQAVTVH--ATNKYFVTAS----------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362 (504)
Q Consensus 307 ~~h~~~v~~l~~~--p~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 362 (504)
.....+-...|. .++..++-.- -...|...|+.+|+....+.. ...+..
T Consensus 120 -~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~------~~wlgH 192 (386)
T PF14583_consen 120 -VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED------TDWLGH 192 (386)
T ss_dssp ---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE------SS-EEE
T ss_pred -CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec------CccccC
Confidence 334444344553 3455443321 123466678888876666542 256788
Q ss_pred EEECC-CCCEEEEEeCC---C-cEEEEEcCC-CceeeeeeCC--CCCeEEEEEcCCCcEEEEEeC-----Cc-EEEEEcC
Q 010669 363 AAFHP-DGLILGTGTSE---A-LVKIWDVKS-QANVAKFDGH--VGAVTAISFSENGYYLATAAH-----DG-VKLWDLR 428 (504)
Q Consensus 363 ~~~~p-dg~~l~~g~~d---g-~I~iwd~~~-~~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~-----d~-v~vwd~~ 428 (504)
+.|+| |..+|+.|.+. . .-|||-+++ +.....+..+ ...+..=-|.+||..|.--+. +. |.-+|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99999 66666666542 1 125565543 3333333222 224555679999986654321 23 7778888
Q ss_pred CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
++......... ....+--++||++++.=|.|
T Consensus 273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 87654333322 34456667899888754443
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.46 E-value=0.013 Score=45.77 Aligned_cols=100 Identities=29% Similarity=0.360 Sum_probs=67.8
Q ss_pred eeEEEEee-CC---CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 010669 268 VTSVKFVT-EG---DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343 (504)
Q Consensus 268 v~~l~~s~-~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~ 343 (504)
|+++++.. ++ +.|++|+.|..|++|+-. ..+..+.. .+.|.++.-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--
Confidence 67777765 32 479999999999999744 45555543 466888877654 6799999999999998532
Q ss_pred EEEEeecCCCCCCCCCeEEEEECC---CC-CEEEEEeCCCcEE
Q 010669 344 CLTQVSDAGTDGRPEGYTSAAFHP---DG-LILGTGTSEALVK 382 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~p---dg-~~l~~g~~dg~I~ 382 (504)
.+..++ ....++++++.. || .-|++|-.+|.|-
T Consensus 73 RlWRiK------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIK------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeec------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233332 123356655544 33 3688888888774
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00033 Score=42.88 Aligned_cols=39 Identities=38% Similarity=0.790 Sum_probs=34.0
Q ss_pred CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293 (504)
Q Consensus 255 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd 293 (504)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778889999999999889999999999999996
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.048 Score=50.01 Aligned_cols=194 Identities=9% Similarity=0.114 Sum_probs=124.5
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
...|.++.|+|+.+.|++....+.-.||=..+|+.++++.- .-...-.+.|..++.+.++--.++.+.++.+..+....
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 34599999999999998888888888887778999888752 12234567888788888877788888888776542211
Q ss_pred eeE----Eec--cC-CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-----CCCCCCeEEEEECC-C
Q 010669 302 CKH----TLK--DH-TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-----DGRPEGYTSAAFHP-D 368 (504)
Q Consensus 302 ~~~----~~~--~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p-d 368 (504)
... .+. .+ +...-.++|.|.+..|+.+=.-.-+.||.+..+........... .-.-..+.++.|++ .
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 111 111 22 55678999999999888888777777776653321111100000 00123477888987 6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeCCC---------CCeEEEEEcCCCcEEEEE
Q 010669 369 GLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATA 417 (504)
Q Consensus 369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~ 417 (504)
+.+++-+.+++.+.-.|.. |.++..+.-+. ...-.|+..++|.+.+++
T Consensus 245 ~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 7788888888888888864 44333332111 134557777766644443
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.1 Score=52.55 Aligned_cols=191 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred eeEEEEeeCCCEEEEE-eCCC----cEEEEeCCCCCCcceeE-EeccCCcCeEEEEEccCCCEEEEEeCCC---------
Q 010669 268 VTSVKFVTEGDLFLTG-SADK----TVRVWQGSEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDN--------- 332 (504)
Q Consensus 268 v~~l~~s~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg--------- 332 (504)
+....++|+|++++.+ +..| +++++|+.++ ..+. .+.. .....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4467889999987754 3334 5999999886 2222 2221 1123499999988776665433
Q ss_pred --eEEEEECCCCeEE--EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC----ceeeeeeCCCC
Q 010669 333 --TWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQ----ANVAKFDGHVG 400 (504)
Q Consensus 333 --~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d----g~I~iwd~~~~----~~~~~~~~~~~ 400 (504)
.|+.|.+.+...- ..+... ........+..++|+++++..... ..+.+.|+..+ .....+.....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CcEEEEEECCCChHhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 3788888776433 223211 111236788999999988764432 35788888764 22333332333
Q ss_pred Ce-EEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcc--ee-eeecCCCCCCeeEEEECCCCCEEEEEeC-c----EEEE
Q 010669 401 AV-TAISFSENGYYLATAAHD---G-VKLWDLRKLKN--FR-SFESSDSETPTNSVDFDHSGSYLAVASA-D----IRVY 467 (504)
Q Consensus 401 ~i-~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~--~~-~~~~~~~~~~v~~i~~~~~g~~l~~~~~-d----i~vw 467 (504)
.+ ..+... ++.+++....+ + |...++..... .. .+..+.....+..+. ..+.+|+.... + |++|
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEE
Confidence 33 344443 55555554443 3 66678777653 22 232221112344444 45556655443 3 8888
Q ss_pred Ee
Q 010669 468 QV 469 (504)
Q Consensus 468 ~~ 469 (504)
++
T Consensus 355 ~~ 356 (414)
T PF02897_consen 355 DL 356 (414)
T ss_dssp ET
T ss_pred EC
Confidence 87
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.42 E-value=0.074 Score=51.89 Aligned_cols=223 Identities=12% Similarity=0.136 Sum_probs=101.0
Q ss_pred CCCEEEEEe-CCCcEEEEcCCCC----ceEEEccc---Cc----cceeEEEEeeCCCEEEEEe--C----CCcEEEEeCC
Q 010669 234 SKDVIATGG-VDTNAVLFDRPSG----QIVTTLSG---HS----KKVTSVKFVTEGDLFLTGS--A----DKTVRVWQGS 295 (504)
Q Consensus 234 ~~~~l~sg~-~dg~i~vwd~~~~----~~~~~~~~---h~----~~v~~l~~s~~~~~l~s~s--~----dg~i~iwd~~ 295 (504)
+.++|+..+ ..+.|+|+|+.+. ++.+.+.. +. .....+-.-|+|+.++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345776666 7789999998742 44444432 11 1122233346888888753 2 2456677655
Q ss_pred CCCCcceeEEecc---CCcCeEEEEEccCCCEEEEEeC--------------------CCeEEEEECCCCeEEEEeecCC
Q 010669 296 EDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASL--------------------DNTWCFYDLSSGICLTQVSDAG 352 (504)
Q Consensus 296 ~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~ 352 (504)
+- ........ ....-..+-|+|..+.++|+.. ..++.+||+.+.+.++.+...
T Consensus 166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg- 241 (461)
T PF05694_consen 166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG- 241 (461)
T ss_dssp T-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES--
T ss_pred cc---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-
Confidence 42 33333322 1234567888998888888753 357999999999999988742
Q ss_pred CCCCCCCeEEEEEC--CCCCEEEEEe-CCCcEEEE-EcCCCc----eeeeeeC-----------------CCCCeEEEEE
Q 010669 353 TDGRPEGYTSAAFH--PDGLILGTGT-SEALVKIW-DVKSQA----NVAKFDG-----------------HVGAVTAISF 407 (504)
Q Consensus 353 ~~~~~~~v~~~~~~--pdg~~l~~g~-~dg~I~iw-d~~~~~----~~~~~~~-----------------~~~~i~~l~~ 407 (504)
........+.|. |+..+=++|+ -.++|..| ....++ .+..+.. -..-|+.|..
T Consensus 242 --~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 242 --EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp --TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred --CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 111234455554 4444433332 33444444 323331 2222211 0245899999
Q ss_pred cCCCcEEEEEeCC-c-EEEEEcCCCccee---eeecC--------------CCCCCeeEEEECCCCCEEEEEeC
Q 010669 408 SENGYYLATAAHD-G-VKLWDLRKLKNFR---SFESS--------------DSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 408 s~~g~~l~s~~~d-~-v~vwd~~~~~~~~---~~~~~--------------~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
|.|.++|..++-- | |+.||+......+ .+... ...+...-+..|-||+.|++.++
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999999888765 6 9999998643222 21111 11223467888999998887654
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.039 Score=57.59 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=118.0
Q ss_pred CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669 244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (504)
Q Consensus 244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (504)
+|.+.-.+-..-..+.-..+....+...+++|+|+.++... .|..-.+|-...++... ....+ .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--QVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce--eeecC--CCCCCce
Confidence 66665544222222222223334678899999999876554 24444444332222112 11223 2378889
Q ss_pred EccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCC---CCCCCeEEEEECCCCCEEEEEeCCCcEEE---EEcCCCc
Q 010669 318 VHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTD---GRPEGYTSAAFHPDGLILGTGTSEALVKI---WDVKSQA 390 (504)
Q Consensus 318 ~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~pdg~~l~~g~~dg~I~i---wd~~~~~ 390 (504)
|+|+|..+.+.+... .+++.+-.....+..+...... .....|..+.|+|||..++... +|.|.+ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 999988777775432 2223322221122211110000 1134699999999999888765 477776 3333443
Q ss_pred e-e---eeee-CCCCCeEEEEEcCCCcEEEEEeCCc---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669 391 N-V---AKFD-GHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 462 (504)
Q Consensus 391 ~-~---~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~ 462 (504)
. + ..+. +-...+.++.|..++.++ ++..++ +...++.... ...+........+..++=+++ -+++...
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcC
Confidence 1 1 1122 222346889999998865 444443 4444444222 122222212456677776663 3444444
Q ss_pred cEEEEEee---ccCccceeEEEccC
Q 010669 463 DIRVYQVA---SVKADWNCIKTFPD 484 (504)
Q Consensus 463 di~vw~~~---~~~~~~~~i~~~~~ 484 (504)
+. +|.+. .....|+.+..+.+
T Consensus 559 ~g-~~~l~~~~~~~~~W~ev~~l~g 582 (591)
T PRK13616 559 RA-VLQLPNSDSGDQYWREVPGLMG 582 (591)
T ss_pred Cc-eEEecCCCCCCCCceECccccC
Confidence 42 33332 22356887777655
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.04 Score=50.13 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=126.0
Q ss_pred EEEeccCCC-EEEEEeCCCc-EEEEcCCCCceEEEcccCccc--eeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 010669 228 SLDIHYSKD-VIATGGVDTN-AVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG 298 (504)
Q Consensus 228 ~~~~s~~~~-~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 298 (504)
.++|+|... -++.+-.-|+ ..++|....+...++...++. --.-.|||||.+|+..-.| |.|-|||...
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-- 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-- 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc--
Confidence 566777543 4555555554 567888776655444322211 1223689999998876443 7899999874
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeC------------------CCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 360 (504)
.++.+..+..|.-.-..+.|.+||+.++.+.. .-++.+.|..+|..+.+.... ..-+...+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~lSi 228 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQLSI 228 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhhcce
Confidence 35677778888878889999999999887632 012333343444444333211 11234568
Q ss_pred EEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeC-------CCCCeEEEEEcCCCcEEEEEeCCc--EEEEE
Q 010669 361 TSAAFHPDGLILGTGTSEAL-----VKIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG--VKLWD 426 (504)
Q Consensus 361 ~~~~~~pdg~~l~~g~~dg~-----I~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd 426 (504)
..++..+||..++.+-..|. -.+=-.+.++++.-+.. ....|-+|+.+.+..+++..+-.| ..+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88888888887766544331 11111123333333321 234677888887666666655554 88999
Q ss_pred cCCCcceeeeecC
Q 010669 427 LRKLKNFRSFESS 439 (504)
Q Consensus 427 ~~~~~~~~~~~~~ 439 (504)
..++..+..-...
T Consensus 309 a~tG~vv~~a~l~ 321 (366)
T COG3490 309 AATGAVVSEAALP 321 (366)
T ss_pred cCCCcEEeccccc
Confidence 9999877655443
No 388
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.40 E-value=3.7e-05 Score=70.07 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=45.8
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIV 51 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 51 (504)
.|.||.|-+..|+++| |||+|+--||.+||..+..||.|--+.++.+|.
T Consensus 25 RC~IC~eyf~ip~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR 73 (442)
T ss_pred HHhHHHHHhcCceecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence 5999999999999999 999999999999999999999999888877764
No 389
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.40 E-value=0.00023 Score=46.04 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=31.7
Q ss_pred ccccCCCCC---CCceEeCCCCeeeeHHHHHHHHHhcCCCCCC
Q 010669 2 NCSISGEVP---EEPVVSKNSGLLFEKRLIERHILDYGKCPVT 41 (504)
Q Consensus 2 ~c~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (504)
.|+|+.+.+ +.++..+ +||+|.+.+|.+|++.+++||+.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCcc
Confidence 488888875 3455564 99999999999999999999986
No 390
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.37 E-value=0.00025 Score=45.96 Aligned_cols=44 Identities=30% Similarity=0.555 Sum_probs=38.8
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCC
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPL 45 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~ 45 (504)
.|+|..+.+.+|++.+..||.|.+.++.+|++. +.+||+.+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 389999999889888779999999999999998 67899988654
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.32 E-value=0.27 Score=50.90 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEccc--Ccc--ceeEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCCcceeE
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSG--HSK--KVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~--~v~~l~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 304 (504)
+..++.++.|+.+.-+|..+|+.+..... +.. .+++--.--++ .++.+. .+|.|..+|..++...-...
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 34677788899999999999998876542 111 12111111134 445443 26888888887763211111
Q ss_pred Eecc---------------------------C-CcCeE-EEEEccCCCEEEEEeCC-----C-----------eEEEEEC
Q 010669 305 TLKD---------------------------H-TAEVQ-AVTVHATNKYFVTASLD-----N-----------TWCFYDL 339 (504)
Q Consensus 305 ~~~~---------------------------h-~~~v~-~l~~~p~~~~l~s~s~d-----g-----------~i~iwd~ 339 (504)
.... + .+.++ .+.+.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1110 0 11222 34566666666665421 2 5777899
Q ss_pred CCCeEEEEeecCCCCCCC----CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCcee
Q 010669 340 SSGICLTQVSDAGTDGRP----EGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANV 392 (504)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~~~~ 392 (504)
++|+..-.+.....+... ....-+.+..+|+ .++.++.+|.+++.|-++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988777632221111 1223334445776 7889999999999999999876
No 392
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.12 Score=46.54 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=89.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe-
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV- 313 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v- 313 (504)
..+++.|+..+.+.--|..+|+.+..-. -...|-+-+.- -|++++.|...|.+.+.+..++. ....+..- +.|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs---~~w~f~~~-~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS---QIWNFVIL-ETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchh---heeeeeeh-hhhc
Confidence 4578889999999999999988765432 12334333332 57789999999999999999873 22222221 122
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEE
Q 010669 314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVK 382 (504)
Q Consensus 314 ~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~ 382 (504)
......+++..+..|+.|+..+..|.++..++...+-.+ ....+-++.| ++.++++. ..|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-----~~f~sP~i~~g~~sly~a~-t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-----GTFVSPVIAPGDGSLYAAI-TAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-----ceeccceecCCCceEEEEe-ccceEE
Confidence 223456789999999999999999999999888765321 2233345556 55544443 344443
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.30 E-value=0.07 Score=50.31 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec----C
Q 010669 276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD----A 351 (504)
Q Consensus 276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~ 351 (504)
.++.|+.|..+| +.+++..... ...... +...|..+...|+-+.+++-+ |+.+.++++..-........ .
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~--~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS--KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc--cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 577899999998 8999883322 222222 233499999998877777665 49999999876544331100 0
Q ss_pred -----CCCCCCCCeEEEE--ECCCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669 352 -----GTDGRPEGYTSAA--FHPDGLILGTGTSEALVKIWDVKSQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAH 419 (504)
Q Consensus 352 -----~~~~~~~~v~~~~--~~pdg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~ 419 (504)
........+..++ -...+...++......|.+|..... +....+. -...+..++|. +..++.|..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 0001123344444 1223333334444558998888653 3445554 34688999997 667888888
Q ss_pred CcEEEEEcCCCcceeee
Q 010669 420 DGVKLWDLRKLKNFRSF 436 (504)
Q Consensus 420 d~v~vwd~~~~~~~~~~ 436 (504)
++..+.|+.++.....+
T Consensus 157 ~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELL 173 (275)
T ss_pred CceEEEecCCCCceEEe
Confidence 88999999976654433
No 394
>PHA02713 hypothetical protein; Provisional
Probab=97.28 E-value=0.01 Score=61.81 Aligned_cols=187 Identities=9% Similarity=0.104 Sum_probs=98.9
Q ss_pred CCCEEEEEeCC------CcEEEEcCCCCceEEEcccCccce-eEEEEeeCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010669 234 SKDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKV-TSVKFVTEGDLFLTGSADK-----TVRVWQGSEDGNYD 301 (504)
Q Consensus 234 ~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~ 301 (504)
++.+++.||.+ ..+..||..+..- ..+..-..+- ......-+|.+.+.||.++ ++..||..++ .|.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~-~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD-KWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC-eEE
Confidence 56777777753 2467788766543 2222111111 1111123677778888764 4788998763 344
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCC-----------------------eEEEEECCCCeEEEEeecCCCCCCCC
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----------------------TWCFYDLSSGICLTQVSDAGTDGRPE 358 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~ 358 (504)
....+.........+.+ +|...+.|+.++ .+..||.++.+-...-. . ....
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m-~~~r 454 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---F-WTGT 454 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---C-Cccc
Confidence 33333221111222222 677777787653 47778887765432211 1 0111
Q ss_pred CeEEEEECCCCCEEEEEeCC------CcEEEEEcCC-C--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc---EEEEE
Q 010669 359 GYTSAAFHPDGLILGTGTSE------ALVKIWDVKS-Q--ANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLWD 426 (504)
Q Consensus 359 ~v~~~~~~pdg~~l~~g~~d------g~I~iwd~~~-~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~---v~vwd 426 (504)
.-.+++ .-+|++.+.|+.+ ..+..||..+ . ..+..+.........+.+ +|.+.++|+.++ +..||
T Consensus 455 ~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 455 IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 111222 2257777888754 2467899876 3 333444333333334444 788888888776 77777
Q ss_pred cCCCc
Q 010669 427 LRKLK 431 (504)
Q Consensus 427 ~~~~~ 431 (504)
..+.+
T Consensus 532 ~~~~~ 536 (557)
T PHA02713 532 VYTYE 536 (557)
T ss_pred ccccc
Confidence 76654
No 395
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.28 E-value=0.00028 Score=65.57 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=43.9
Q ss_pred CccccCCCCCCC--c--eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 010669 1 MNCSISGEVPEE--P--VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55 (504)
Q Consensus 1 ~~c~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 55 (504)
++||||+..+.. + ++- .|||||-.++|++.= ....||+||++.+.+|+|+|..
T Consensus 114 ~~CPvt~~~~~~~~~fv~l~-~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 114 FICPVTGKEFNGKHKFVYLR-PCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred eECCCCCcccCCceeEEEEc-CCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 579999999843 2 444 499999999999983 4567999999999999999943
No 396
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=97.27 E-value=9.5e-05 Score=65.40 Aligned_cols=43 Identities=30% Similarity=0.496 Sum_probs=39.2
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc-C-CCCCCCCC
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-G-KCPVTGEP 44 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p~~~~~ 44 (504)
.|+||..+...||+|.+|||+|+|.-|+.++... + .||+-|-+
T Consensus 178 rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 178 RDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 6999999999999999999999999999999964 3 59998866
No 397
>PHA02713 hypothetical protein; Provisional
Probab=97.26 E-value=0.045 Score=57.12 Aligned_cols=218 Identities=9% Similarity=0.102 Sum_probs=108.4
Q ss_pred cEEEEcCCCCceEEEcccCccce--eEEEEeeCCCEEEEEeCC------CcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669 246 NAVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317 (504)
Q Consensus 246 ~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 317 (504)
.+..||..+++-.. +..-..+. .+++. -++..++.||.+ ..+..||..+. .|.....+....... +++
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-eEE
Confidence 46778877654322 21111111 12222 366777777754 34677887763 333322222111112 222
Q ss_pred EccCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC-------------
Q 010669 318 VHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA------------- 379 (504)
Q Consensus 318 ~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg------------- 379 (504)
.-+|+..+.||.++ .+..||..++.-.. ... ..........+. -+|.+.+.|+.++
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~--mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPD--MPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCC--CCcccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence 22677888888764 47889988764332 111 101111112222 2688888887653
Q ss_pred ----------cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCC-Cc--ceeeee
Q 010669 380 ----------LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD------G-VKLWDLRK-LK--NFRSFE 437 (504)
Q Consensus 380 ----------~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~-~~--~~~~~~ 437 (504)
.+..||..+.+ .+..+.........+.+ +|.+.+.|+.+ . +..||..+ .+ .+..+.
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 47778876643 22222211111112223 67766767643 2 67899886 33 222222
Q ss_pred cCCCCCCeeEEEECCCCCEEEEEeCc----EEEEEeeccCccceeEEE
Q 010669 438 SSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNCIKT 481 (504)
Q Consensus 438 ~~~~~~~v~~i~~~~~g~~l~~~~~d----i~vw~~~~~~~~~~~i~~ 481 (504)
.. ......+.+ +|.+.++||.+ +..||.. +.+|+.+..
T Consensus 501 ~~--r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~--~~~W~~~~~ 542 (557)
T PHA02713 501 SR--LSALHTILH--DNTIMMLHCYESYMLQDTFNVY--TYEWNHICH 542 (557)
T ss_pred cc--cccceeEEE--CCEEEEEeeecceeehhhcCcc--cccccchhh
Confidence 21 222222333 67777778765 5666654 367887654
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.22 E-value=0.00099 Score=40.60 Aligned_cols=38 Identities=37% Similarity=0.493 Sum_probs=33.4
Q ss_pred ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 010669 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd 338 (504)
.+...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566678889999999999999999999999999996
No 399
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.21 E-value=0.17 Score=46.38 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=116.3
Q ss_pred CeEEEEeccCCCEEEEEeCCC--cEEEEcCCCCceEEEcccCcc-ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 225 GIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
-.-.+.|..+|.++-+.|.-| .|+.+|+.+++......-... ---.++.. ++++..-.-.++...+||..+- +
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl---~ 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL---K 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT---E
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc---e
Confidence 345677877888888887766 688999999987765542211 11223332 3444445567889999998764 5
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
.+.++. ..+.=+.++ .+++.|+.+.....++++|..+.+....+........-..++-+.|. +|.+.|=.-....|
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 566554 335567777 36777888777889999999887776665532111112345667776 67777777777788
Q ss_pred EEEEcCCCceeeeeeC------------C---CCCeEEEEEcCCCcEEEEEeC
Q 010669 382 KIWDVKSQANVAKFDG------------H---VGAVTAISFSENGYYLATAAH 419 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~------------~---~~~i~~l~~s~~g~~l~s~~~ 419 (504)
...|..+|+.+..+.- + ..-.+.|+|.|.+..|...+.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 8899999987765521 1 245889999987655555443
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.20 E-value=0.17 Score=46.33 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=121.7
Q ss_pred ceEEEcccCccc-eeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC
Q 010669 256 QIVTTLSGHSKK-VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN 332 (504)
Q Consensus 256 ~~~~~~~~h~~~-v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 332 (504)
+.+.++...... .-.+.|..+|.++-+.+.-| .|+.+|+.++.. .....+. ..-.--.++.. +++.+.-.=.++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~-~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-LQSVPLP-PRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE-EEEEE-T-TT--EEEEEEE-TTEEEEEESSSS
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEEECC-ccccceeEEEE-CCEEEEEEecCC
Confidence 445555533332 34677777888888887666 788999988631 1122222 12223344444 233344444688
Q ss_pred eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCC-----CCCeEEEEE
Q 010669 333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISF 407 (504)
Q Consensus 333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~ 407 (504)
...+||..+.+.+..+... ..=..++ .||..|+.......|+++|..+.+....+... -..++-+.|
T Consensus 111 ~~f~yd~~tl~~~~~~~y~------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYP------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EEEEEETTTTEEEEEEE-S------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred eEEEEccccceEEEEEecC------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 9999999999988888632 2334555 45667777777788999999887776665432 124666777
Q ss_pred cCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-------------CCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669 408 SENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-------------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 408 s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-------------~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~ 469 (504)
- +|...|=.-... |...|..+|+....+... ......+.|+|+|....+.+.|.. =++|.+
T Consensus 183 i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV 258 (264)
T PF05096_consen 183 I-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEV 258 (264)
T ss_dssp E-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEE
T ss_pred E-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEE
Confidence 5 676555554444 888898888877655321 013457899999999888888877 677766
No 401
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.19 E-value=0.00073 Score=42.90 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=32.2
Q ss_pred cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc--CCCCC
Q 010669 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDY--GKCPV 40 (504)
Q Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ 40 (504)
|+|..+.+.+|++....||.|.+.+|.+|++.+ -+||.
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence 899999999999444699999999999999943 35775
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.19 Score=46.22 Aligned_cols=197 Identities=13% Similarity=0.206 Sum_probs=121.1
Q ss_pred ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339 (504)
Q Consensus 262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~ 339 (504)
.+-...+.++.|+|+.+.|++......-.||=-..+ ..+.++. +. ...-.|.+..+|++.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCC---ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 445556999999999998888777766666643333 4555443 22 23456777777777777777888888877
Q ss_pred CCCeEEEEe-----ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee---eeeCC-------CCCeEE
Q 010669 340 SSGICLTQV-----SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA---KFDGH-------VGAVTA 404 (504)
Q Consensus 340 ~~~~~~~~~-----~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~---~~~~~-------~~~i~~ 404 (504)
......... ........+.+.-.++|+|....|+++-+..-+.||.+..+.... ....+ -..|++
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 665332222 111122226678899999988888888888888888775432111 11111 235778
Q ss_pred EEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCc
Q 010669 405 ISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 405 l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~d 463 (504)
+.|++. +.+|+-+.+++ +.-.|... ..+..+..... ....-.++.+++|..-+++-.+
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 889874 55666666666 66677653 33333332211 1234578888888766655444
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.049 Score=49.62 Aligned_cols=145 Identities=14% Similarity=0.183 Sum_probs=97.8
Q ss_pred eEEEEEccCCC-EEEEEeCCCe-EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEE
Q 010669 313 VQAVTVHATNK-YFVTASLDNT-WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWD 385 (504)
Q Consensus 313 v~~l~~~p~~~-~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----g~I~iwd 385 (504)
...|.|||... -++.+-.-|+ ..++|....+....+... ......-.-.|||||.+|...-.| |.|-|||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 44678888544 4555555554 568899888777666522 111223345799999999876433 7899999
Q ss_pred cCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-------------------cEEEEEcCCCcceeeeecC--CCCC
Q 010669 386 VKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHD-------------------GVKLWDLRKLKNFRSFESS--DSET 443 (504)
Q Consensus 386 ~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-------------------~v~vwd~~~~~~~~~~~~~--~~~~ 443 (504)
.+.+ +.+.++..|.-....+.|.+||+.|+.+..+ .+.+.|-.++..+.+...+ .+..
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 9864 5677888888888899999999999887531 1334444455554444333 3345
Q ss_pred CeeEEEECCCCCEEEEE
Q 010669 444 PTNSVDFDHSGSYLAVA 460 (504)
Q Consensus 444 ~v~~i~~~~~g~~l~~~ 460 (504)
.+..++..+||..++.+
T Consensus 227 SiRHld~g~dgtvwfgc 243 (366)
T COG3490 227 SIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ceeeeeeCCCCcEEEEE
Confidence 78888888888877755
No 404
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.14 E-value=0.033 Score=58.05 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=101.7
Q ss_pred CeEEEEeccCCCEEEEEe------CCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC----------
Q 010669 225 GIVSLDIHYSKDVIATGG------VDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---------- 286 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~------~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---------- 286 (504)
.+.+.+++|+|+.++... .|+ .|.+++.. +.......+. ..+.-.|+|+|..+.+....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 577889999999776654 243 45555542 3322222332 37888999998877666432
Q ss_pred --CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEE---EECCCCeEEEEeecC-C-CCCCCCC
Q 010669 287 --KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF---YDLSSGICLTQVSDA-G-TDGRPEG 359 (504)
Q Consensus 287 --g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~-~-~~~~~~~ 359 (504)
+.+.+.++..+ .... ...+.|..+.|+|||..++... +|.|++ -....|. ..+... . .......
T Consensus 428 ~~gql~~~~vd~g---e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 428 ATGQLARTPVDAS---AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDT 498 (591)
T ss_pred CCceEEEEeccCc---hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCc
Confidence 22222233321 1111 2345799999999999888766 477777 4434443 111100 0 0011233
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCcE
Q 010669 360 YTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDG--HVGAVTAISFSENGYYLATAAHDGV 422 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~v 422 (504)
+..+.|..++.++ ++..++.-.+|.+.- |.....+.. ...++..|+-+++ .++....+++
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 5789999999855 555555445555432 222212222 2456777777753 4555566663
No 405
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.12 E-value=0.051 Score=42.45 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=66.4
Q ss_pred eEEEEecc---CC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 226 IVSLDIHY---SK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 226 I~~~~~s~---~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
|+++++.. +| +.|++|+.|..|++|+- .+.+..+.. .+.|++++-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence 45555543 43 48999999999999975 466666663 456788776654 5688899999999997643
Q ss_pred eeEEeccCCcCeEEEEEcc-CC---CEEEEEeCCCeEE
Q 010669 302 CKHTLKDHTAEVQAVTVHA-TN---KYFVTASLDNTWC 335 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p-~~---~~l~s~s~dg~i~ 335 (504)
..-.++.. ..+.++.+.. ++ ..|++|-.+|.|-
T Consensus 73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22233322 3356665543 32 3688887888764
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.00096 Score=58.45 Aligned_cols=142 Identities=14% Similarity=0.173 Sum_probs=78.1
Q ss_pred EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (504)
+...+.||.|+-+++..-. ..+... .-|... ...-.-+..+++|+.+|.|++|.............. +....
T Consensus 33 l~~~sa~~~v~~~~~~k~k-~s~rse-~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~~e~i 104 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHK-ESCRSE-RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---GEESI 104 (238)
T ss_pred hccccCCcccccchhhhhh-hhhhhh-hhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc---ccccc
Confidence 4455677777777665321 011110 111111 111223567899999999999987632111111100 11112
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-CCeEEEEEcCCCcEEEEE--eCCc-EEEEEcCC
Q 010669 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-GAVTAISFSENGYYLATA--AHDG-VKLWDLRK 429 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~--~~d~-v~vwd~~~ 429 (504)
...+.--.++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+.+++.+ +.+. ++.|++..
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2223333467789999999999999998888777666666 344444444445555555 4444 55665543
No 407
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.06 E-value=0.00025 Score=63.36 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=40.8
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT 46 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 46 (504)
.|-|+-+-...|++|+ |||+|+.-||..||.++..||++.++--
T Consensus 27 rC~IC~~~i~ip~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 27 RCRICDCRISIPCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred Hhhhhhheeecceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 4999999999999997 9999999999999999999999997644
No 408
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00041 Score=60.52 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=29.3
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHH
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL 33 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (504)
.|++|-.+..+|||+| .||+|||.+|.+||-
T Consensus 45 cCsLtLqPc~dPvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 45 CCSLTLQPCRDPVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred eeeeecccccCCccCC-CCeeeeHHHHHHHHH
Confidence 4999999999999997 699999999999996
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.022 Score=60.73 Aligned_cols=101 Identities=25% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC
Q 010669 234 SKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE 312 (504)
Q Consensus 234 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 312 (504)
.+-.++.|+..|.+-..|.... .....-..-.++|++++|+.+|..++.|-.+|.|.+||+..+ ...+.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence 4567888999999998887542 111122234578999999999999999999999999999886 455555555555
Q ss_pred eEEEE---EccCCCEEEEEeCCCeEEEEEC
Q 010669 313 VQAVT---VHATNKYFVTASLDNTWCFYDL 339 (504)
Q Consensus 313 v~~l~---~~p~~~~l~s~s~dg~i~iwd~ 339 (504)
.+++- +..++..++++...|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55444 3345567888877776 5544
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.0033 Score=66.57 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=77.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-CCC
Q 010669 368 DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ETP 444 (504)
Q Consensus 368 dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-~~~ 444 (504)
.+..++.|++.|.+...|++.. .+...-..-.++|++++|+.+|..++.|-.+| |.+||+..++.++.+..+.+ ...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3557889999999999998653 22222223457999999999999999999999 99999999998888776532 234
Q ss_pred eeEEEECCCCCEEEEEeCcEEEEEeecc
Q 010669 445 TNSVDFDHSGSYLAVASADIRVYQVASV 472 (504)
Q Consensus 445 v~~i~~~~~g~~l~~~~~di~vw~~~~~ 472 (504)
+..+.+..++..++++...+.+|++.-.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gsf~~lv~n 205 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGSFWKLVFN 205 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCceEEEEec
Confidence 5555666667767766666889987543
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.95 E-value=0.62 Score=48.29 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=114.3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCc-ccee----------EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVT----------SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 303 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~----------~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 303 (504)
+..+++++.++.|+-+|..+|+.+-.+.... ..+. .+++ .+..++.++.|+.+.-.|..++. .+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk---~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK---VV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC---EE
Confidence 5577777788899999999999887765211 1111 1122 23467778889999999988863 32
Q ss_pred EEec--cCCcCeEEEEEcc--CCCEEEEEe------CCCeEEEEECCCCeEEEEeecCCCCC------------------
Q 010669 304 HTLK--DHTAEVQAVTVHA--TNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTDG------------------ 355 (504)
Q Consensus 304 ~~~~--~h~~~v~~l~~~p--~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~------------------ 355 (504)
-... .+... ..+.-.| .+..+++++ .+|.|.-+|.++|+.+-.+.......
T Consensus 144 W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 2221 11100 0111112 133455543 26899999999999887654321110
Q ss_pred ---------CCCCeEEEEECCCCCEEEEEeCC-----C-----------cEEEEEcCCCceeeeeeC--CC-------CC
Q 010669 356 ---------RPEGYTSAAFHPDGLILGTGTSE-----A-----------LVKIWDVKSQANVAKFDG--HV-------GA 401 (504)
Q Consensus 356 ---------~~~~v~~~~~~pdg~~l~~g~~d-----g-----------~I~iwd~~~~~~~~~~~~--~~-------~~ 401 (504)
....-..+.+.|...++..+..+ + .|.-.|+++|+..-.|+. |. ..
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 00111245777766666666522 2 567778888988766653 21 11
Q ss_pred eEEEEEcCCCc---EEEEEeCCc-EEEEEcCCCcce
Q 010669 402 VTAISFSENGY---YLATAAHDG-VKLWDLRKLKNF 433 (504)
Q Consensus 402 i~~l~~s~~g~---~l~s~~~d~-v~vwd~~~~~~~ 433 (504)
..-+.+..+|. .++.+..+| +++.|-++++.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12223334665 677888888 999999998875
No 412
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.91 E-value=0.58 Score=49.96 Aligned_cols=256 Identities=11% Similarity=0.171 Sum_probs=137.2
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcC--CCCceE--EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~--~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 300 (504)
.|.-..|--|..+|.++..||.+..|.+ .++..- +...-.+.++.--.|+..+..-+.+..|.-..+|..+..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--- 661 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK--- 661 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc---
Confidence 3555566667889999999999877654 444331 111223456666667665554444455566666654431
Q ss_pred ceeEEeccCCcCeEEEE-Ecc--CCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 301 DCKHTLKDHTAEVQAVT-VHA--TNKYFVTASLDNTWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 301 ~~~~~~~~h~~~v~~l~-~~p--~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
-+...+. -..+..++ |+. -...++++. .+.+.+.-++.-+.+ .++. -......+++++...++++.
T Consensus 662 Lv~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp------l~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 662 LVYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP------LGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred EEEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec------CCCChhheEecccceEEEEE
Confidence 1111111 11122221 221 123455544 455666655443222 2221 12346677787755555554
Q ss_pred eCC--------------CcEEEEEcCCCceeeeee--CC--CCCeEEEEEcCC-CcEEEEEeC----------Cc-EEEE
Q 010669 376 TSE--------------ALVKIWDVKSQANVAKFD--GH--VGAVTAISFSEN-GYYLATAAH----------DG-VKLW 425 (504)
Q Consensus 376 ~~d--------------g~I~iwd~~~~~~~~~~~--~~--~~~i~~l~~s~~-g~~l~s~~~----------d~-v~vw 425 (504)
+.. ..++++|-++.+.+.... .. ...|.++.|..| +.++++|+. .| |.+|
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 321 136667766554433222 11 124556668877 778888752 25 8888
Q ss_pred EcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 426 d~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
.+..+..+.........+.+.++.. -+|++||..+..+++|++. +.+.++.-..| ..++..+++...
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t----~~~eLr~e~~~--~~~~~aL~l~v~ 879 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWT----TERELRIECNI--SNPIIALDLQVK 879 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEcc----ccceehhhhcc--cCCeEEEEEEec
Confidence 8877555544444333455655543 3788888888889999993 33444444444 445666655443
No 413
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.87 E-value=0.0014 Score=60.84 Aligned_cols=54 Identities=33% Similarity=0.549 Sum_probs=45.9
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCC---CCCCCCC-CCCccccccC
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKC---PVTGEPL-TMDDIVPIKT 55 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~-~~~~~~~~~~ 55 (504)
+|+||+++.+.|||+-.-|+.|.|..|.+||-+.+.. |.+...+ ++.||++|+-
T Consensus 36 ~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~ 93 (260)
T PF04641_consen 36 HCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKF 93 (260)
T ss_pred cccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEe
Confidence 6999999999999987789999999999999988654 4444444 6899999975
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.87 E-value=0.43 Score=45.21 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=79.3
Q ss_pred ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC-C
Q 010669 262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL-S 340 (504)
Q Consensus 262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~-~ 340 (504)
..-.+.+..+.-+++|.++++++......-||.-. ..+.+.. ..-...|..|.|.|++...+.+ ..|.|++=+. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-TTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCC-ccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 34456788888889999888887766667887543 2233322 2345789999999998776654 8888888872 2
Q ss_pred CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---CCCCCeEEEEEcCCCcEEEEE
Q 010669 341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD---GHVGAVTAISFSENGYYLATA 417 (504)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~s~ 417 (504)
......... .........+..++|.+++.+.++|+. |.+ +.....|+.-.... .-...++.|.|.++.+-++.|
T Consensus 217 ~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 217 DGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEEEE---B--TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred Ccccccccc-CCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 222221111 111122345889999999888887765 433 34555555444433 234568899998766666665
Q ss_pred eCCc
Q 010669 418 AHDG 421 (504)
Q Consensus 418 ~~d~ 421 (504)
. +|
T Consensus 294 ~-~G 296 (302)
T PF14870_consen 294 Q-DG 296 (302)
T ss_dssp S-TT
T ss_pred C-Cc
Confidence 4 55
No 415
>PRK10115 protease 2; Provisional
Probab=96.86 E-value=0.9 Score=48.78 Aligned_cols=244 Identities=7% Similarity=0.029 Sum_probs=118.3
Q ss_pred CeEEEEeccCCCEEEEEeC-----CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC------CcEEEEe
Q 010669 225 GIVSLDIHYSKDVIATGGV-----DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQ 293 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d------g~i~iwd 293 (504)
.+..+.++|||++|+.+.. ...|++.|+.+|..+...-.... ..++|.+|++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 3667889999998877643 23588889988764322211222 459999998866554432 3567777
Q ss_pred CCCCCCcceeEEeccCCcCeE-EEEEccCCCEEEEEeC---CCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669 294 GSEDGNYDCKHTLKDHTAEVQ-AVTVHATNKYFVTASL---DNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHP 367 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~l~s~s~---dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p 367 (504)
+.++.. .....+........ .+..+.++++++..+. ++.+.+++.. .+.....+.. . ......+. +.
T Consensus 206 lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~-~~~~~~~~-~~ 278 (686)
T PRK10115 206 IGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR----R-KDHEYSLD-HY 278 (686)
T ss_pred CCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC----C-CCCEEEEE-eC
Confidence 766421 11122222222233 3333447776665443 4568888843 3332222211 1 11122222 33
Q ss_pred CCCEEEEEeC---CCcEEEEEcCCCceeeeeeCC-C-CCeEEEEEcCCCcEEEEEeCCc---EEEEEcCCCcceeeeecC
Q 010669 368 DGLILGTGTS---EALVKIWDVKSQANVAKFDGH-V-GAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESS 439 (504)
Q Consensus 368 dg~~l~~g~~---dg~I~iwd~~~~~~~~~~~~~-~-~~i~~l~~s~~g~~l~s~~~d~---v~vwd~~~~~~~~~~~~~ 439 (504)
.+.+++.... ...|...++........+..+ . ..|..+.+. .+.++++...++ +.++|+... .+..+...
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~ 356 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD 356 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC
Confidence 3333333222 223444455422222333334 2 368888887 345555666565 666776433 33433321
Q ss_pred CCCCCeeEEEEC--CCCC-EEEEEeCc---EEEEEeeccCccceeEE
Q 010669 440 DSETPTNSVDFD--HSGS-YLAVASAD---IRVYQVASVKADWNCIK 480 (504)
Q Consensus 440 ~~~~~v~~i~~~--~~g~-~l~~~~~d---i~vw~~~~~~~~~~~i~ 480 (504)
. ...+..+.++ +++. ++++.+.- -.+|.++..+..+..+.
T Consensus 357 ~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 357 D-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred C-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 1 1223333344 4444 44444333 55555543333444444
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.85 E-value=0.049 Score=54.59 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=93.2
Q ss_pred cceeEEEEeeCCCEEE-EEe--CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC----CCEEEEEeCCCeEEEEE
Q 010669 266 KKVTSVKFVTEGDLFL-TGS--ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT----NKYFVTASLDNTWCFYD 338 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~-s~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~l~s~s~dg~i~iwd 338 (504)
.+|..++|. ||+.++ +.- .+|.+++=|- ..+.. -..|.++.|.|- ...++..-..+.|.+|-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 468899997 666544 432 2344333221 22332 244899999985 34677777889999998
Q ss_pred CC-----CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCC
Q 010669 339 LS-----SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENG 411 (504)
Q Consensus 339 ~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g 411 (504)
+. +++........-....+---..+.|||...+|++-+....=.+++++... ....++ ..+-|.|.+|.+||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcC
Confidence 75 22222221100000111123468899999888887666655567776433 222333 45789999999999
Q ss_pred cEEEEEeCCc--EEEEEcC
Q 010669 412 YYLATAAHDG--VKLWDLR 428 (504)
Q Consensus 412 ~~l~s~~~d~--v~vwd~~ 428 (504)
..|+++-... -++||-.
T Consensus 168 ~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CEEEEEeCCeEEEEEecCc
Confidence 9988887665 7899853
No 417
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.84 E-value=0.0013 Score=40.83 Aligned_cols=38 Identities=29% Similarity=0.553 Sum_probs=33.3
Q ss_pred cccCCCCCCCceEeCCCCeeeeHHHHHHHHH-hcCCCCCC
Q 010669 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHIL-DYGKCPVT 41 (504)
Q Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~ 41 (504)
|+|..+....|++.+ .||.|...+|++|++ .+++||+.
T Consensus 1 C~iC~~~~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999996 999999999999999 55678863
No 418
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.74 E-value=0.085 Score=55.04 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=102.4
Q ss_pred CCCEEEEEeCC------CcEEEEcCCCCceEEEcccCccceeEEEE-eeCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010669 234 SKDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKVTSVKF-VTEGDLFLTGSADK-----TVRVWQGSEDGNYD 301 (504)
Q Consensus 234 ~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~ 301 (504)
++.+.++||.| ..+..||..+.+-.. +..-...=..... .-+|.+.++||.|| +|-.||..+ ..|.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~-~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT-NKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC-Cccc
Confidence 45788889888 346778877665322 2211111111111 12788888999886 477788776 3444
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCC------eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDN------TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g 375 (504)
....+.......-...+ +|...++||.++ ++..||..++.....-.-. .. ..-..++ .-++.+.++|
T Consensus 410 ~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---~~-R~~~g~a-~~~~~iYvvG 482 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---TR-RSGFGVA-VLNGKIYVVG 482 (571)
T ss_pred ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---cc-cccceEE-EECCEEEEEC
Confidence 44433222222222222 688888888655 4678888876543322210 11 1111122 2257888888
Q ss_pred eCCCc-----EEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc------EEEEEcCCCc
Q 010669 376 TSEAL-----VKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLK 431 (504)
Q Consensus 376 ~~dg~-----I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~------v~vwd~~~~~ 431 (504)
+.|+. |..||..+.+- +..+......+-.+.+ ++...++|+.++ |..||..+.+
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 88763 77788876542 3223323333333444 677777777662 6677765543
No 419
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.74 E-value=0.62 Score=45.20 Aligned_cols=200 Identities=13% Similarity=0.087 Sum_probs=95.6
Q ss_pred cCCCCceEEEcccCcccee-----EEEEeeCCCEEE-EEeCCCc--EEEEeCCCCCCcceeEEeccCC-cCeEEEEEccC
Q 010669 251 DRPSGQIVTTLSGHSKKVT-----SVKFVTEGDLFL-TGSADKT--VRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHAT 321 (504)
Q Consensus 251 d~~~~~~~~~~~~h~~~v~-----~l~~s~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~ 321 (504)
|..+|-.+..+........ .=+|.++|+.|+ .+..||. +.+.|+.+ ..+..+.... .......++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t----~~i~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT----GEITQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc----CEEEECccCCCCCccceEEecC
Confidence 6677777777764433222 235677887655 4445665 44556665 3444444332 22335667788
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE--CCCCCEEEEEe----------------------C
Q 010669 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF--HPDGLILGTGT----------------------S 377 (504)
Q Consensus 322 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~pdg~~l~~g~----------------------~ 377 (504)
++.++-......+.-.|+++.+....+... ...+-...| +.|+..++..- .
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-----~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVP-----DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE-------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECC-----cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 888776666678999999998765555421 223333444 34566544321 1
Q ss_pred CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCC---cE--EEEEcCC-CcceeeeecCCCCCCeeEEEE
Q 010669 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-GYYLATAAHD---GV--KLWDLRK-LKNFRSFESSDSETPTNSVDF 450 (504)
Q Consensus 378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d---~v--~vwd~~~-~~~~~~~~~~~~~~~v~~i~~ 450 (504)
...|.-.|+++|+....+. ....+..+.|+|. ..+|+-|-++ .| +||-+++ +...+.+..+.....+..=-|
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence 1235556777776555554 4457889999995 4555555544 23 7776653 333333333322334555578
Q ss_pred CCCCCEEEEE
Q 010669 451 DHSGSYLAVA 460 (504)
Q Consensus 451 ~~~g~~l~~~ 460 (504)
.|||..|..-
T Consensus 246 ~~DG~~i~y~ 255 (386)
T PF14583_consen 246 VPDGSTIWYD 255 (386)
T ss_dssp -TTSS-EEEE
T ss_pred cCCCCEEEEE
Confidence 9999877653
No 420
>PHA03098 kelch-like protein; Provisional
Probab=96.73 E-value=0.14 Score=53.43 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=99.0
Q ss_pred eCCCEEEEEeCCC------cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCe
Q 010669 275 TEGDLFLTGSADK------TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGI 343 (504)
Q Consensus 275 ~~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~ 343 (504)
.++..++.||.++ .+..||..+. .+.....+.........+. -++..++.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3566777777543 4677887663 2322222211111122222 257778888765 347788887765
Q ss_pred EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEE
Q 010669 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLA 415 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d------g~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~ 415 (504)
-...-. . .....-.+++ .-++++++.|+.+ +.+..||..+.+ .+..+.........+. .++..++
T Consensus 370 W~~~~~---l-p~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv 442 (534)
T PHA03098 370 WREEPP---L-IFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYV 442 (534)
T ss_pred eeeCCC---c-CcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEE
Confidence 332111 1 1111111222 2357777777732 458889987643 2211111111112222 2566666
Q ss_pred EEeCC--------c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeE
Q 010669 416 TAAHD--------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCI 479 (504)
Q Consensus 416 s~~~d--------~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i 479 (504)
.|+.+ . +.+||..+.+-...-...........+.+ ++.+++.||.+ +.+||. .++.|..+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~ 518 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD--KTNTWTLF 518 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeC--CCCEEEec
Confidence 66532 2 78889876542211111100111222223 56666777643 566665 34779888
Q ss_pred EEccCCCCCCcee
Q 010669 480 KTFPDLSGTGAAS 492 (504)
Q Consensus 480 ~~~~~h~~~~~v~ 492 (504)
..++.+ .+.|.
T Consensus 519 ~~~p~~--~~~~~ 529 (534)
T PHA03098 519 CKFPKV--IGSLE 529 (534)
T ss_pred CCCccc--cccee
Confidence 877665 44443
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.72 E-value=0.32 Score=43.19 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC---CEEEEEeCCCeEEEEECCC--CeEEEEeecCC
Q 010669 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLDNTWCFYDLSS--GICLTQVSDAG 352 (504)
Q Consensus 278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~ 352 (504)
.++.+--..|.|.-||+.+... ....+.+ .++.++.+--.+ .+.+.++..-.|.-||... -....++....
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v--~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKV--YRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred eEEEEEeccCceehhhhhhhhe--EEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 3444444556666688776421 1122222 123333332222 2333333333344566332 22222222111
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-
Q 010669 353 TDGRPEGYTSAAFHPDGLILGTGTSE----------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 421 (504)
Q Consensus 353 ~~~~~~~v~~~~~~pdg~~l~~g~~d----------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~- 421 (504)
........+.-..+|+|+++ .|... |.++.|-. +..+..+...-+--+.++|+.+.+.+.....-+
T Consensus 104 ~d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred chHHhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCce
Confidence 22234556777889999984 44322 23333332 112222222333456788988877766655444
Q ss_pred -EEEEE--cCCCcc-----eeeeecCC--CCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCce
Q 010669 422 -VKLWD--LRKLKN-----FRSFESSD--SETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAA 491 (504)
Q Consensus 422 -v~vwd--~~~~~~-----~~~~~~~~--~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v 491 (504)
|.-|| ..++.. +..+.... .....-.++++.+|++.++.-+..+|+.++. .+++.+..+.-. +..|
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp--~tGK~L~eiklP--t~qi 256 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP--TTGKILLEIKLP--TPQI 256 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC--CCCcEEEEEEcC--CCce
Confidence 76677 444432 22221100 1123345677888887776666655555543 568888877665 7788
Q ss_pred eEEEEe
Q 010669 492 SFLFLF 497 (504)
Q Consensus 492 ~~l~~~ 497 (504)
++++|-
T Consensus 257 tsccFg 262 (310)
T KOG4499|consen 257 TSCCFG 262 (310)
T ss_pred EEEEec
Confidence 998885
No 422
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.024 Score=55.79 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=95.0
Q ss_pred CCCE-EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-------EEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669 234 SKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-------LFLTGSADKTVRVWQGSEDGNYDCKHT 305 (504)
Q Consensus 234 ~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~s~s~dg~i~iwd~~~~~~~~~~~~ 305 (504)
+.++ |.++.....++-.|++.|+.+...+-+.. |+-+.+.|+.+ .-+.|-.|..|.-||++-.+. ..+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeee
Confidence 3444 34455556688889999999999987766 77788877654 234566788899999875432 11222
Q ss_pred eccCC----cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 306 LKDHT----AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 306 ~~~h~----~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
.++|. ....|++-. ...+|++||.+|.|++||- .+..-++. ..+-..+|..+..+.||+++++.+ +..+
T Consensus 422 ~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA----lPgLG~~I~hVdvtadGKwil~Tc-~tyL 494 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA----LPGLGDAIKHVDVTADGKWILATC-KTYL 494 (644)
T ss_pred eeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc----ccccCCceeeEEeeccCcEEEEec-ccEE
Confidence 22221 223444444 3448999999999999997 34333322 224457899999999999887655 4556
Q ss_pred EEEEc
Q 010669 382 KIWDV 386 (504)
Q Consensus 382 ~iwd~ 386 (504)
.+.|+
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 66665
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.69 E-value=0.74 Score=45.42 Aligned_cols=146 Identities=8% Similarity=0.122 Sum_probs=82.4
Q ss_pred CeEEEEeccCCCEEEEEe-----------CCC-cEEEEcCCC--Cc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCc
Q 010669 225 GIVSLDIHYSKDVIATGG-----------VDT-NAVLFDRPS--GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~-----------~dg-~i~vwd~~~--~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~ 288 (504)
....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 356889999999877642 223 677776432 32 233443334456889998888 444 444443
Q ss_pred EEEEeCCCCCC----ccee-EEecc----CCcCeEEEEEccCCCEEEEEeCC-------------------CeEEEEECC
Q 010669 289 VRVWQGSEDGN----YDCK-HTLKD----HTAEVQAVTVHATNKYFVTASLD-------------------NTWCFYDLS 340 (504)
Q Consensus 289 i~iwd~~~~~~----~~~~-~~~~~----h~~~v~~l~~~p~~~~l~s~s~d-------------------g~i~iwd~~ 340 (504)
.++.|....+. .+.+ ..+.. +......+.|.|+|.+.++.+.. |.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 34445543221 1112 12222 12447789999999876655421 445556665
Q ss_pred CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
+++.. .+. . + -.....++|+++|.++++-..+
T Consensus 173 g~~~e-~~a-~---G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLR-VVA-H---G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEE-EEe-c---C-cCCCccceECCCCCEEEEccCC
Confidence 54432 221 1 2 1335689999999988775433
No 424
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0013 Score=65.44 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=48.1
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (504)
+-|+...+|++||+=|.||.+-.|..|..|+-.-|+||+++.||++||.+|=
T Consensus 856 lDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn 907 (929)
T COG5113 856 LDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPN 907 (929)
T ss_pred hCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCC
Confidence 3567788999999999999999999999999999999999999999998765
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.34 Score=50.18 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=112.9
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 302 (504)
.++..++..+|..-.=+ .+.-..|+||+.. |..+..+.-..+.+..+.|+.+. .|++...||++.+|++..... ..
T Consensus 43 ~gGpIAV~r~p~~~~~~-~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i-e~ 118 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPL-YSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI-ES 118 (829)
T ss_pred cCCceEEEecccccccc-cccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhh-cc
Confidence 44555666666322111 1334568888864 67666665555588999998655 466678999999999865311 11
Q ss_pred e-EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC---CEEEEEe-C
Q 010669 303 K-HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILGTGT-S 377 (504)
Q Consensus 303 ~-~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg---~~l~~g~-~ 377 (504)
. .-+......|..+.+..+|-.++ ..+|.+.+-.-........+... ......-+|-...+++ ..++-.. .
T Consensus 119 ~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 119 NSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred cccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechh
Confidence 0 00111222344444443553333 34555544332222122222210 0111111222222221 1111111 1
Q ss_pred CCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669 378 EALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 455 (504)
Q Consensus 378 dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~ 455 (504)
.| ..++-...+ .....+....+.+..+..||++.+|+--...| |.+-+....+....+....+ .....++|.-+..
T Consensus 195 v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnda 272 (829)
T KOG2280|consen 195 VG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGNDA 272 (829)
T ss_pred hh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCCc
Confidence 11 111111111 11222332346788899999999999998888 88888777777766665432 2334677765553
Q ss_pred E
Q 010669 456 Y 456 (504)
Q Consensus 456 ~ 456 (504)
.
T Consensus 273 V 273 (829)
T KOG2280|consen 273 V 273 (829)
T ss_pred e
Confidence 3
No 426
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.002 Score=68.27 Aligned_cols=51 Identities=31% Similarity=0.450 Sum_probs=48.2
Q ss_pred cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669 3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (504)
Q Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (504)
-||.+.+|.+||+=|.||++=+|..|+.|+...++||++++||++++++|-
T Consensus 873 DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn 923 (943)
T KOG2042|consen 873 DPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPN 923 (943)
T ss_pred CccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCC
Confidence 478999999999999999999999999999999999999999999999765
No 427
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.66 E-value=0.00044 Score=47.22 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=26.7
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIV 51 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 51 (504)
|-|++++..+++||..-.+.|+|+..+|.+.+.. .||++..|-.+.|+.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHH
Confidence 5699999999999975589999999999887663 399999999988873
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.64 E-value=0.11 Score=52.11 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=99.0
Q ss_pred cCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC----CCEEEEEeCCCcEEE
Q 010669 311 AEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD----GLILGTGTSEALVKI 383 (504)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd----g~~l~~g~~dg~I~i 383 (504)
.++.+++|. ||+.++-.. .+|.+++=| .+.+ +....|..+.|.|- ..-+++......|.|
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi---------GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI---------GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe---------eccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 468899998 666544332 233333322 1122 22346899999994 323444456778999
Q ss_pred EEcCC-----CceeeeeeCC---CC--CeEEEEEcCCCcEEEEEeCCcE-EEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669 384 WDVKS-----QANVAKFDGH---VG--AVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH 452 (504)
Q Consensus 384 wd~~~-----~~~~~~~~~~---~~--~i~~l~~s~~g~~l~s~~~d~v-~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~ 452 (504)
|.+.- ++.+..-..+ .- -...+.|+|....|++-....+ .+++++........+. ...+.|.+.+|.+
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 99852 2222211111 11 2245779999999888877763 4566664433333333 2257899999999
Q ss_pred CCCEEEEEeCc---EEEEEeeccCcccee---EEEccCCCCCCceeEEEEeecCccc
Q 010669 453 SGSYLAVASAD---IRVYQVASVKADWNC---IKTFPDLSGTGAASFLFLFVLGQTC 503 (504)
Q Consensus 453 ~g~~l~~~~~d---i~vw~~~~~~~~~~~---i~~~~~h~~~~~v~~l~~~~~g~~~ 503 (504)
||+.|+++-.. -+|||- ..++... --.|+- .+.|.+|....+.|+|
T Consensus 166 DG~RLVVAvGSsLHSyiWd~--~qKtL~~CsfcPVFdv---~~~Icsi~AT~dsqVA 217 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDS--AQKTLHRCSFCPVFDV---GGYICSIEATVDSQVA 217 (671)
T ss_pred cCCEEEEEeCCeEEEEEecC--chhhhhhCCcceeecC---CCceEEEEEeccceEE
Confidence 99988877555 566653 2222111 112222 4567777666666654
No 429
>PHA03098 kelch-like protein; Provisional
Probab=96.62 E-value=0.21 Score=52.10 Aligned_cols=186 Identities=14% Similarity=0.173 Sum_probs=93.5
Q ss_pred cCCCEEEEEeCCC------cEEEEcCCCCceEEEccc---CccceeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 010669 233 YSKDVIATGGVDT------NAVLFDRPSGQIVTTLSG---HSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG 298 (504)
Q Consensus 233 ~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 298 (504)
.++.+++.||.++ .+..||..+.+.. .+.. .......+ .-++.+++.||.+ ..+..||..+.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~- 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGES- 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCC-
Confidence 3566777777543 4677887765542 2221 11111222 2267777788765 35677887763
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l 372 (504)
.|.....+...... .+++. -++..++.||.+ ..+..||..+++-...-. ...... -.+++ ..++.++
T Consensus 369 ~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~-~~~~~-~~~~~iy 441 (534)
T PHA03098 369 KWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHY-GGCAI-YHDGKIY 441 (534)
T ss_pred ceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCcccc-CceEE-EECCEEE
Confidence 34333222211111 12222 256777777732 358889988765432211 101111 11222 2356777
Q ss_pred EEEeCCC--------cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669 373 GTGTSEA--------LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK 431 (504)
Q Consensus 373 ~~g~~dg--------~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~ 431 (504)
+.|+.++ .+.+||..+++ .+..+.........+.+ ++.+++.|+.+ . |.+||..+.+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 7776432 38889987653 22222111111222333 67777777654 2 7888877643
No 430
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.60 E-value=0.00091 Score=64.91 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=42.0
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh----cC-CCCCCCCCCCCCc
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD----YG-KCPVTGEPLTMDD 49 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~p~~~~~~~~~~ 49 (504)
.|.|+-++.++|++| +|.|+|||-||.+|+.. +| +||.|-.+|++|+
T Consensus 538 ~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 538 ECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred eecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 599999999999999 69999999999999873 23 6999999999884
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.54 E-value=1.3 Score=47.72 Aligned_cols=198 Identities=11% Similarity=0.147 Sum_probs=116.6
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEcccCccc--------eeEEEEee----------------CCCEEEEEeCCCcEE
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--------VTSVKFVT----------------EGDLFLTGSADKTVR 290 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--------v~~l~~s~----------------~~~~l~s~s~dg~i~ 290 (504)
+..|+.++.++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777788899999999999988776532211 12233321 234788888999999
Q ss_pred EEeCCCCCCcceeEEeccCCcCeE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEECCCCeEE
Q 010669 291 VWQGSEDGNYDCKHTLKDHTAEVQ-------------AVTVHA--TNKYFVTASL----------DNTWCFYDLSSGICL 345 (504)
Q Consensus 291 iwd~~~~~~~~~~~~~~~h~~~v~-------------~l~~~p--~~~~l~s~s~----------dg~i~iwd~~~~~~~ 345 (504)
-.|..++ +....+. ..+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+..
T Consensus 274 ALDA~TG---k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTG---KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCC---CEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9998886 3333321 111110 111112 2445666643 688999999999988
Q ss_pred EEeecCCCC-------------CCCCCeEEEEECCCCCEEEEEe------------------CCCcEEEEEcCCCceeee
Q 010669 346 TQVSDAGTD-------------GRPEGYTSAAFHPDGLILGTGT------------------SEALVKIWDVKSQANVAK 394 (504)
Q Consensus 346 ~~~~~~~~~-------------~~~~~v~~~~~~pdg~~l~~g~------------------~dg~I~iwd~~~~~~~~~ 394 (504)
-.+...... +....-...+++++..+++.+. ..+.|.-.|.++++..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 776532110 0001113455666555544432 124566678888887766
Q ss_pred eeC-CC--------CCeEEEEEcC-CCc---EEEEEeCCc-EEEEEcCCCcceeee
Q 010669 395 FDG-HV--------GAVTAISFSE-NGY---YLATAAHDG-VKLWDLRKLKNFRSF 436 (504)
Q Consensus 395 ~~~-~~--------~~i~~l~~s~-~g~---~l~s~~~d~-v~vwd~~~~~~~~~~ 436 (504)
+.. |. ....-+.+.. +|. .++.++.+| ++++|-++++.+...
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 653 21 1111122322 553 788888888 999999998876543
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.51 E-value=0.075 Score=55.05 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=74.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEc--CCCcEEEEEeCCc-EEEEEcC-------
Q 010669 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFS--ENGYYLATAAHDG-VKLWDLR------- 428 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s--~~g~~l~s~~~d~-v~vwd~~------- 428 (504)
..-+.-+.-++..++.+....+.|||.+.+.....-. ...+.|.++.|. |+|..+++.+-.. |.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444444455555555556689999999887443322 346789999986 4788777777776 8777431
Q ss_pred --CCcceeeeecCCC-CCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669 429 --KLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 429 --~~~~~~~~~~~~~-~~~v~~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
+...++.+....+ ..+|.+..|-++|.+++++|+.+.||+-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1223455544333 3689999999999988888887999874
No 433
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.45 E-value=0.01 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI 257 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~ 257 (504)
...|.+++|+|..++||.|..+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 434
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.01 Score=52.12 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEE-EeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC-c
Q 010669 235 KDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVK-FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-A 311 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~-~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~ 311 (504)
+.-+++|+.+|.|++|+.... .....+..-...|.++. --.++.+.++++.||.|+.|++.-. +.+.....|+ .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCC
Confidence 457888999999999987621 21112222222333322 2235568899999999999998764 4444444565 4
Q ss_pred CeEEEEEccCCCEEEEE--eCCCeEEEEECCC
Q 010669 312 EVQAVTVHATNKYFVTA--SLDNTWCFYDLSS 341 (504)
Q Consensus 312 ~v~~l~~~p~~~~l~s~--s~dg~i~iwd~~~ 341 (504)
++........+..+.++ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444444455556655 6666666666553
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.042 Score=58.93 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=91.7
Q ss_pred CeEEEEEccCCCEEEE--EeCCCeEEEEECCCCeEEEEeecC------CCCCCCCCeEEEEECCC-CCEEEEEeCCCcEE
Q 010669 312 EVQAVTVHATNKYFVT--ASLDNTWCFYDLSSGICLTQVSDA------GTDGRPEGYTSAAFHPD-GLILGTGTSEALVK 382 (504)
Q Consensus 312 ~v~~l~~~p~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~~pd-g~~l~~g~~dg~I~ 382 (504)
++..+...+|+...++ .+.+-.|..||+++-......... ..........++.|+|. ....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555555667654433 334447899999764322211100 00112234678889983 34567778899999
Q ss_pred EEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC--CCCeeEEEECCCCCEEE
Q 010669 383 IWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 383 iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~--~~~v~~i~~~~~g~~l~ 458 (504)
+..+..... +..+. .....++++|+|.|..++.|..+| +.-|.. .+.....+..... ...|.+++|-....+++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 988754432 22333 445789999999999999999998 766654 3443344433221 46799999988877777
Q ss_pred EE
Q 010669 459 VA 460 (504)
Q Consensus 459 ~~ 460 (504)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 54
No 436
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.40 E-value=0.82 Score=42.45 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=87.9
Q ss_pred ceeEEEEeeCCCEEEEEe---CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE-CCCC
Q 010669 267 KVTSVKFVTEGDLFLTGS---ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD-LSSG 342 (504)
Q Consensus 267 ~v~~l~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd-~~~~ 342 (504)
.+.+.+++++++.++... ....+.++.... . ....+. ...+..-.|.+++...+....+....++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~--~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--P--VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--c--ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999998766554 333455554332 1 112222 23677888999987777666666666663 3333
Q ss_pred eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcC---CC------ceeeeeeCCCCCeEEEEEcCC
Q 010669 343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVK---SQ------ANVAKFDGHVGAVTAISFSEN 410 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~---~~------~~~~~~~~~~~~i~~l~~s~~ 410 (504)
......... . .....|+.+.++|||..++.-. .++.|.+--+. .+ ............++.+.|.++
T Consensus 99 ~~~~~~v~~-~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 99 TGEPVEVDW-P-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred cceeEEecc-c-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 322211111 0 1112799999999999877765 35777776553 22 111122223468999999999
Q ss_pred CcEEEEEeCCc
Q 010669 411 GYYLATAAHDG 421 (504)
Q Consensus 411 g~~l~s~~~d~ 421 (504)
+.+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 98877776553
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.36 E-value=0.0078 Score=62.65 Aligned_cols=174 Identities=13% Similarity=0.189 Sum_probs=97.9
Q ss_pred cccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCC--CCceEE-----EcccCccceeEEEEee---CCCEEEEEeCC
Q 010669 218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP--SGQIVT-----TLSGHSKKVTSVKFVT---EGDLFLTGSAD 286 (504)
Q Consensus 218 ~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~--~~~~~~-----~~~~h~~~v~~l~~s~---~~~~l~s~s~d 286 (504)
+.++-.++|-.+.|... ...+. -.-|.+.||++. .|+... ....-...+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 34455666777776431 11221 234678889864 344322 2222333445566665 55678888889
Q ss_pred CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 366 (504)
Q Consensus 287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 366 (504)
++|++.++... ....+.+|...+..++|...|-..+. .++
T Consensus 205 ~~i~lL~~~ra----~~~l~rsHs~~~~d~a~~~~g~~~l~------------------------------------~lS 244 (1283)
T KOG1916|consen 205 GEIRLLNINRA----LRSLFRSHSQRVTDMAFFAEGVLKLA------------------------------------SLS 244 (1283)
T ss_pred CceeEeeechH----HHHHHHhcCCCcccHHHHhhchhhhe------------------------------------eeC
Confidence 99998887663 22445568888877776543321111 056
Q ss_pred CCCCEEEEEeCCCcEEEEEc-----CCCceeeeeeCCC-CCeEEEEEcCC-------C--cEEEEEeCCc--EEEEEcCC
Q 010669 367 PDGLILGTGTSEALVKIWDV-----KSQANVAKFDGHV-GAVTAISFSEN-------G--YYLATAAHDG--VKLWDLRK 429 (504)
Q Consensus 367 pdg~~l~~g~~dg~I~iwd~-----~~~~~~~~~~~~~-~~i~~l~~s~~-------g--~~l~s~~~d~--v~vwd~~~ 429 (504)
|||..|+..+.||.+++|.+ +...++...+.|. .+-.|.-|..+ | .+++++++-+ +++|....
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 66666666666766666554 2334555566665 33333333322 2 2445555443 99999887
Q ss_pred Ccce
Q 010669 430 LKNF 433 (504)
Q Consensus 430 ~~~~ 433 (504)
.+++
T Consensus 325 w~Cl 328 (1283)
T KOG1916|consen 325 WQCL 328 (1283)
T ss_pred hhhh
Confidence 7776
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=96.34 E-value=0.32 Score=49.90 Aligned_cols=182 Identities=13% Similarity=0.102 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCC-----cEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeCC--CcEEEEeCCCCCCcceeE
Q 010669 234 SKDVIATGGVDT-----NAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 234 ~~~~l~sg~~dg-----~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 304 (504)
++.++++||.++ .+..||..++.-... +.........+ .-++.+.+.||.+ .++..||..+ +.|....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~-n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD-AAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC-CeEEECC
Confidence 455667777543 466788776543221 11111111122 2367777777754 3577888765 3343333
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
.+.........+. -+|+..+.||.++ .+..||.+++.-...-. . .....-.+++ .-+|++.+.|+ .+
T Consensus 348 ~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~---m-~~~r~~~~~~-~~~~~IYv~GG---~~ 417 (480)
T PHA02790 348 SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS---T-YYPHYKSCAL-VFGRRLFLVGR---NA 417 (480)
T ss_pred CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC---C-CCccccceEE-EECCEEEEECC---ce
Confidence 3321111112222 2677778887654 47788887765432211 1 1111111222 23577777774 57
Q ss_pred EEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCC
Q 010669 382 KIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKL 430 (504)
Q Consensus 382 ~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~ 430 (504)
.+||.++++ .+..+.........+.+ +|.+.+.|+.+ . |..||..+.
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 789987643 22222211222223333 67777777643 2 666776653
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.30 E-value=1.2 Score=43.28 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=115.0
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCCCCce---EEEc----ccCccceeEEEEeeC---CCEEEEEeC-C--------
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTL----SGHSKKVTSVKFVTE---GDLFLTGSA-D-------- 286 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~---~~~~----~~h~~~v~~l~~s~~---~~~l~s~s~-d-------- 286 (504)
-++|+|.|+|+++++ ...|.|.+++ ..+.. +..+ .........++++|+ ..+|+.... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999988775 5699999999 34433 3333 234456899999984 233333322 1
Q ss_pred CcEEEEeCCCC-CC---ccee-EEecc---CCcCeEEEEEccCCCEEEEEeCCCe---EEEEECCCCeEEEEeecCCC--
Q 010669 287 KTVRVWQGSED-GN---YDCK-HTLKD---HTAEVQAVTVHATNKYFVTASLDNT---WCFYDLSSGICLTQVSDAGT-- 353 (504)
Q Consensus 287 g~i~iwd~~~~-~~---~~~~-~~~~~---h~~~v~~l~~~p~~~~l~s~s~dg~---i~iwd~~~~~~~~~~~~~~~-- 353 (504)
..|.-|..... .. .+.+ ..+.. ....-..|.|.|+|.++++.+..+. ..-.+...++.+. +...+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilr-i~~dG~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILR-IDPDGSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEE-EETTSSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEE-ecccCcCC
Confidence 13333433322 01 0111 11111 2234567999999987776655332 0000001122221 111000
Q ss_pred --------CCCC--------CCeEEEEECCC-CCEEEEE-eCCCcEEEEEcCCCc-------------------------
Q 010669 354 --------DGRP--------EGYTSAAFHPD-GLILGTG-TSEALVKIWDVKSQA------------------------- 390 (504)
Q Consensus 354 --------~~~~--------~~v~~~~~~pd-g~~l~~g-~~dg~I~iwd~~~~~------------------------- 390 (504)
.... .....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0001 12457899998 7766542 222222222222211
Q ss_pred ----eeeeeeCCCCCeEEEEEcC-------CCcEEEEEeCCc-EEEEEcCCCcceee-eec-CCCCCCeeEEEECCCCCE
Q 010669 391 ----NVAKFDGHVGAVTAISFSE-------NGYYLATAAHDG-VKLWDLRKLKNFRS-FES-SDSETPTNSVDFDHSGSY 456 (504)
Q Consensus 391 ----~~~~~~~~~~~i~~l~~s~-------~g~~l~s~~~d~-v~vwd~~~~~~~~~-~~~-~~~~~~v~~i~~~~~g~~ 456 (504)
++..+. +...++.+.|.. .|.+|++.-..+ |....+.....+.. -.. ......+..+++.|||.+
T Consensus 241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 222233 335677787764 345666555444 77777764432221 111 222347899999999998
Q ss_pred EEEEeCcEEEE
Q 010669 457 LAVASADIRVY 467 (504)
Q Consensus 457 l~~~~~di~vw 467 (504)
.++...+..||
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88877665555
No 440
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.27 E-value=0.006 Score=44.26 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=32.0
Q ss_pred ccccCCCCCC------------CceEeCCCCeeeeHHHHHHHHHhcCCCCCCC
Q 010669 2 NCSISGEVPE------------EPVVSKNSGLLFEKRLIERHILDYGKCPVTG 42 (504)
Q Consensus 2 ~c~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 42 (504)
.|+|+.+... -|++...+||.|=..+|++|++.+.+||+++
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3888877772 3455556999999999999999999999864
No 441
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.02 Score=37.30 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 010669 357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN 391 (504)
Q Consensus 357 ~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~ 391 (504)
...|.+++|+|...++|.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 442
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.21 E-value=1.5 Score=43.54 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=56.5
Q ss_pred EEEeccCCCEEEEEeCCCcEEE---EcCC-----CCceEEE----cccC-ccceeEEEEee-----------CCCEEEEE
Q 010669 228 SLDIHYSKDVIATGGVDTNAVL---FDRP-----SGQIVTT----LSGH-SKKVTSVKFVT-----------EGDLFLTG 283 (504)
Q Consensus 228 ~~~~s~~~~~l~sg~~dg~i~v---wd~~-----~~~~~~~----~~~h-~~~v~~l~~s~-----------~~~~l~s~ 283 (504)
.++.+|++++|+.+..+..+.+ |+.. .+..... +... ...|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987776655 5331 1112111 1211 15688887754 24578999
Q ss_pred eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEc
Q 010669 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319 (504)
Q Consensus 284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 319 (504)
..+|.|++|.... ..+..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyte~G----~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENG----VLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccc----hHHHHHhcCccceEEEEec
Confidence 9999999998643 3333334577788877764
No 443
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.20 E-value=0.73 Score=45.66 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=57.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEE-EEEcCC-----------------CcEEEE-Ee
Q 010669 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA-ISFSEN-----------------GYYLAT-AA 418 (504)
Q Consensus 358 ~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~-----------------g~~l~s-~~ 418 (504)
..+.+++.+|++++.++...-|.|.++|+.++..++.++|....=.. +..... ..+|+. +-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 34678999999999999888899999999999888888875442111 111100 123333 34
Q ss_pred CCc-EEEEEcCCCcceeeeecC
Q 010669 419 HDG-VKLWDLRKLKNFRSFESS 439 (504)
Q Consensus 419 ~d~-v~vwd~~~~~~~~~~~~~ 439 (504)
..| |.||+++.+..+..+...
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEeC
Confidence 456 999999999888777654
No 444
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.12 Score=55.70 Aligned_cols=145 Identities=9% Similarity=-0.019 Sum_probs=88.8
Q ss_pred ceeEEEEeeCCCEE--EEEeCCCcEEEEeCCCCCCc--ceeEEec------cCCcCeEEEEEccCCC-EEEEEeCCCeEE
Q 010669 267 KVTSVKFVTEGDLF--LTGSADKTVRVWQGSEDGNY--DCKHTLK------DHTAEVQAVTVHATNK-YFVTASLDNTWC 335 (504)
Q Consensus 267 ~v~~l~~s~~~~~l--~s~s~dg~i~iwd~~~~~~~--~~~~~~~------~h~~~v~~l~~~p~~~-~l~s~s~dg~i~ 335 (504)
+|..+...+|+... +..+.+-.|..||+..-... .....+. .......++.|+|.-. ..+.+..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676643 33344457889998753211 1111111 2223456788888643 456677888888
Q ss_pred EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC----CCCCeEEEEEcCCC
Q 010669 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENG 411 (504)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~g 411 (504)
+..+........-. ......+|++|+|.|+.+++|-.+|++.-|-.. .+....+.+ ....|.+|+|-...
T Consensus 182 V~~~~~~~~~v~s~-----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhccc-----CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 87665332211111 223568999999999999999999999888653 222222221 24689999998877
Q ss_pred cEEEEE
Q 010669 412 YYLATA 417 (504)
Q Consensus 412 ~~l~s~ 417 (504)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 777654
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.15 E-value=0.45 Score=46.95 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=82.9
Q ss_pred cceeEEEEeeCCCEEEEEe-----------CCC-cEEEEeCCC-CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC
Q 010669 266 KKVTSVKFVTEGDLFLTGS-----------ADK-TVRVWQGSE-DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN 332 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~s~s-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 332 (504)
.....|+|.++|+++++-. ..+ .|.+++-.. .+.......+...-.....+++.+++ +++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3467788888888766642 223 676665332 23333334444334456889999888 44444444
Q ss_pred eEEEEECCCC-----eEEEEeecCCCC--CCCCCeEEEEECCCCCEEEEEeCC-------------------CcEEEEEc
Q 010669 333 TWCFYDLSSG-----ICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTGTSE-------------------ALVKIWDV 386 (504)
Q Consensus 333 ~i~iwd~~~~-----~~~~~~~~~~~~--~~~~~v~~~~~~pdg~~l~~g~~d-------------------g~I~iwd~ 386 (504)
.+++.|.... +....+...... .+......++|.|||.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455321 111112211111 123457789999999877654421 34555555
Q ss_pred CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669 387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420 (504)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d 420 (504)
..++. ..+.........++|+++|.++++-..+
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 44432 2222222345789999999888765544
No 446
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.14 E-value=0.91 Score=40.44 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=85.7
Q ss_pred cceeEEEEeeCCCEEEEEeCC---------CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEE-EEeCCCeEE
Q 010669 266 KKVTSVKFVTEGDLFLTGSAD---------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWC 335 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~ 335 (504)
...+.-..+|+|+++.-.-.| |.++.|-... .+..+...-+.-+.++|+.+.+.+. +-+.+-.|.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 445666778999884322222 3445553322 1111222223446788887766544 455677787
Q ss_pred EEE--CCCCe-----EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669 336 FYD--LSSGI-----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408 (504)
Q Consensus 336 iwd--~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s 408 (504)
-|| ..+|. .+..+....... ....-.+++..+|+++++.-+.|+|.-+|..+|+.+.+++-....|++++|-
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e-~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFE-SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcC-CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 787 55543 233333211111 1122345667789999999999999999999999999998888899999995
Q ss_pred C
Q 010669 409 E 409 (504)
Q Consensus 409 ~ 409 (504)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 3
No 447
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.07 E-value=1.1 Score=40.89 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=139.5
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 304 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 304 (504)
.-..++-++||..-+++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|.++........
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44577888999988999888888888999998766655555666778888888766554433 34445554422111111
Q ss_pred EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669 305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384 (504)
Q Consensus 305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw 384 (504)
....-........|.+.|++-+++.. |.---.|-.++ .+..+.. .....-+.++..|||...++.-.+..|-..
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpa----PqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPA----PQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeecc----CCCCCCcceEECCCCcEEEEeccccceEEc
Confidence 11223456778889999998888753 21111122111 1111211 112346778899999998888888888888
Q ss_pred EcCCCceeeeee---CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669 385 DVKSQANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458 (504)
Q Consensus 385 d~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~ 458 (504)
|..++.. ..+. ........+--+|.|..-++....+ +..||..... ...+.....+..-.++..+..++.-.
T Consensus 216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEe
Confidence 8777632 2222 1123345566677788777755555 8888876544 56666665555667777776666544
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.06 E-value=0.014 Score=60.85 Aligned_cols=185 Identities=15% Similarity=0.224 Sum_probs=103.8
Q ss_pred CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeE
Q 010669 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYT 361 (504)
Q Consensus 285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~ 361 (504)
..+-+++-+....- .....+++..+.|-.+.|-. +...+. -.-|.+.+||+. .|+....+...........+.
T Consensus 109 ~~~~vrvaN~~~sm--~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~ 184 (1283)
T KOG1916|consen 109 MENGVRVANQEPSM--RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQ 184 (1283)
T ss_pred hhhhhhhccCcchh--HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcc
Confidence 34567777654421 11123456778888888843 222222 233677888875 333322221110111122334
Q ss_pred EEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEE-----------EcCCCcEEEEEeCCc-EEEEE
Q 010669 362 SAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS-----------FSENGYYLATAAHDG-VKLWD 426 (504)
Q Consensus 362 ~~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~-----------~s~~g~~l~s~~~d~-v~vwd 426 (504)
-+.|.| +..++..+..+|.|++..+..... ..|.+|...++.++ +||||..|++++.|| +++|.
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 455555 667888888899998877654322 33455665555443 689999999999998 77665
Q ss_pred c-----CCCcceeeeecCCCCCCeeEEEECCC-------C--CEEEEEeCc---EEEEEeeccCccceeE
Q 010669 427 L-----RKLKNFRSFESSDSETPTNSVDFDHS-------G--SYLAVASAD---IRVYQVASVKADWNCI 479 (504)
Q Consensus 427 ~-----~~~~~~~~~~~~~~~~~v~~i~~~~~-------g--~~l~~~~~d---i~vw~~~~~~~~~~~i 479 (504)
+ +..+++..++.|+....+..+ |+.. + .+++++++- +++|.- ..|+|+
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~----a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE----APWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeec----cchhhh
Confidence 4 344566666665422223333 4432 1 234444433 999987 678887
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.99 E-value=1.3 Score=41.03 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=88.4
Q ss_pred CeEEEEeccCCCEEEEEe---CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe-CCCCCCc
Q 010669 225 GIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ-GSEDGNY 300 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd-~~~~~~~ 300 (504)
.+.+.+++++++.++... ....++++.... .....+.+ ..+..-.|++++...+....+...+++. ...+. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~-~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT-G 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc-c
Confidence 578899999999776655 334455554432 22222232 3678889999987766666666677774 22211 1
Q ss_pred ceeEE-eccCCcCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCeEE--EEeec--CCCCCCCCCeEEEEECCCCCEE
Q 010669 301 DCKHT-LKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICL--TQVSD--AGTDGRPEGYTSAAFHPDGLIL 372 (504)
Q Consensus 301 ~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~--~~~~~--~~~~~~~~~v~~~~~~pdg~~l 372 (504)
..... ...-.+.|..+.++|||..++... .++.|.+--+.....- ..+.. .........+..+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 11111 111122899999999999877765 3567776654321110 11100 0011223578999999999888
Q ss_pred EEEeCCCc
Q 010669 373 GTGTSEAL 380 (504)
Q Consensus 373 ~~g~~dg~ 380 (504)
+.+...+.
T Consensus 181 V~~~~~~~ 188 (253)
T PF10647_consen 181 VLGRSAGG 188 (253)
T ss_pred EEeCCCCC
Confidence 77765543
No 450
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.91 E-value=2 Score=42.36 Aligned_cols=195 Identities=9% Similarity=0.084 Sum_probs=92.6
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCC-CcceeEEecc---CC----cCeEEEEEccCCCEEEEEeC------CCeEEEEECC
Q 010669 276 EGDLFLTGS-ADKTVRVWQGSEDG-NYDCKHTLKD---HT----AEVQAVTVHATNKYFVTASL------DNTWCFYDLS 340 (504)
Q Consensus 276 ~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~ 340 (504)
+.++|+..+ .++.|.|.|+.++. ..+..+++.. +. ..-..+..-|+|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 78899999998543 2233344332 11 22334455678988888632 3468888888
Q ss_pred CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--------------------CCCcEEEEEcCCCceeeeeeCCC-
Q 010669 341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--------------------SEALVKIWDVKSQANVAKFDGHV- 399 (504)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--------------------~dg~I~iwd~~~~~~~~~~~~~~- 399 (504)
+.+......... +....-..+-|+|..+.+++.. ...++.+||+.+.+.++++.--.
T Consensus 166 tf~v~g~We~~~--~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEVKGRWEKDR--GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccccceeccCC--CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 877776665321 2233456788888888888753 23579999999999998886322
Q ss_pred -CCeEEEEEcCC--CcEEEEEe-CCc-EEEE-EcCCCc----ceeeeecCCC---------------CCCeeEEEECCCC
Q 010669 400 -GAVTAISFSEN--GYYLATAA-HDG-VKLW-DLRKLK----NFRSFESSDS---------------ETPTNSVDFDHSG 454 (504)
Q Consensus 400 -~~i~~l~~s~~--g~~l~s~~-~d~-v~vw-d~~~~~----~~~~~~~~~~---------------~~~v~~i~~~~~g 454 (504)
..+..|.|..+ ..+=++++ -.+ |..| ....++ .+..+..... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 24667777654 33433333 333 4444 323332 1111211100 1347899999999
Q ss_pred CEEEEEeCc---EEEEEeecc
Q 010669 455 SYLAVASAD---IRVYQVASV 472 (504)
Q Consensus 455 ~~l~~~~~d---i~vw~~~~~ 472 (504)
++|++++.- ++.||+...
T Consensus 324 rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SST
T ss_pred CEEEEEcccCCcEEEEecCCC
Confidence 999998764 999999543
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=95.90 E-value=1.9 Score=41.96 Aligned_cols=260 Identities=9% Similarity=0.080 Sum_probs=124.7
Q ss_pred CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc----cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669 223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~ 298 (504)
...+.+|.|..+.+-+++|. +|.|.. ..+.|+.-.... .....+.++.|.++ ..+++ +..|.|.. .-+.+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCCC
Confidence 44788999986666666664 554432 122333322221 12234777877643 33443 45554332 222233
Q ss_pred CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
.+.....-....+....+.....+..+ .++..|.|.. ..+.|+....+.. .....+..+.+.|++.+++++. .
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~-S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~ 192 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYR-TTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-R 192 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEE-ECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-C
Confidence 444332110111111222222222233 3344444432 2223433333321 2235688999999987776664 4
Q ss_pred CcEEE-EEcCCCceeeee-eCCCCCeEEEEEcCCCcEEEEEeCCcEEEE-EcCCCcceeeeecC--CCCCCeeEEEECCC
Q 010669 379 ALVKI-WDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLW-DLRKLKNFRSFESS--DSETPTNSVDFDHS 453 (504)
Q Consensus 379 g~I~i-wd~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~v~vw-d~~~~~~~~~~~~~--~~~~~v~~i~~~~~ 453 (504)
|.+.. +|- .++..... ..-...++++.+.+++..++++. .+..+. ....+........+ .....+..+.+.++
T Consensus 193 G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 193 GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 54432 221 12222222 22345789999999998777654 453334 33444433322221 11245788999998
Q ss_pred CCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669 454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 454 g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
+..++++.....+... ...++|+.+.....- ......+.|..+
T Consensus 271 ~~~~~~G~~G~v~~S~-d~G~tW~~~~~~~~~--~~~~~~~~~~~~ 313 (334)
T PRK13684 271 GEIWAGGGNGTLLVSK-DGGKTWEKDPVGEEV--PSNFYKIVFLDP 313 (334)
T ss_pred CCEEEEcCCCeEEEeC-CCCCCCeECCcCCCC--CcceEEEEEeCC
Confidence 8876665544344433 334677765432221 224455554433
No 452
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.80 E-value=3.5 Score=44.41 Aligned_cols=229 Identities=12% Similarity=0.087 Sum_probs=122.1
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc-ccCccceeEEEEeeC--C-C---EEEEEeCCCcEEEEeCCCC
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTE--G-D---LFLTGSADKTVRVWQGSED 297 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~--~-~---~l~s~s~dg~i~iwd~~~~ 297 (504)
.++....+.+...++.++.++.+...+...+...... +.....|.|+.++|- + + +++.|.++..+.+.-...+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 4555555555666777777777776666655422211 123467999999973 2 2 6888888877766544332
Q ss_pred CCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669 298 GNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373 (504)
Q Consensus 298 ~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~ 373 (504)
....+...+.+ -...|.-..+-.+..+|.++..||.+..|-+. ++.....-+. . -...++.--.|+..+..-+
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--~-lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV--T-LGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc--c-cCCCCcEEEEEeeCCceEE
Confidence 21122221221 12334455555568899999999998766544 4433221110 0 1124555566666555444
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeCCCCCeEE-EEEcCC--CcEEEEEeCCcEEEEEcCCCcc--eeeeecCCCCCCeeEE
Q 010669 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTA-ISFSEN--GYYLATAAHDGVKLWDLRKLKN--FRSFESSDSETPTNSV 448 (504)
Q Consensus 374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~--g~~l~s~~~d~v~vwd~~~~~~--~~~~~~~~~~~~v~~i 448 (504)
.+.+|.-..+|.-+ ++.+.+--.- ..+.. ..|+.+ +..|+++..+.+++.-+..-+. ++++.. ......+
T Consensus 646 fa~sdrP~viY~~n-~kLv~spls~-kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl---~~~prrI 720 (1096)
T KOG1897|consen 646 FALSDRPTVIYSSN-GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL---GESPRRI 720 (1096)
T ss_pred EEeCCCCEEEEecC-CcEEEeccch-HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC---CCChhhe
Confidence 45566666666543 3332221111 01111 223332 3567777777777776654433 233333 3466778
Q ss_pred EECCCCCEEEEEe
Q 010669 449 DFDHSGSYLAVAS 461 (504)
Q Consensus 449 ~~~~~g~~l~~~~ 461 (504)
++.+....+++.+
T Consensus 721 ~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 721 CYQESSLTFGVLS 733 (1096)
T ss_pred EecccceEEEEEe
Confidence 8877555555443
No 453
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.71 E-value=3.1 Score=43.10 Aligned_cols=255 Identities=16% Similarity=0.182 Sum_probs=122.7
Q ss_pred ccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccC-ccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcceeEEec
Q 010669 232 HYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGH-SKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLK 307 (504)
Q Consensus 232 s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h-~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 307 (504)
..++..++.+..+|.++...+.... .....-+. ....+++.+..+| .+|+.||.-|.=.++.+.. .....+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-SNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEES-ESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-CCcEEEEecc
Confidence 4567788889999999888765433 11122222 4455677776554 3777777655544444433 3345555554
Q ss_pred cCCcCeEEEEEccC----CC------EEEEEe---CCCeEEEEECCCCeEEE--EeecCCCCCCCCCeEEEEECC-CCCE
Q 010669 308 DHTAEVQAVTVHAT----NK------YFVTAS---LDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHP-DGLI 371 (504)
Q Consensus 308 ~h~~~v~~l~~~p~----~~------~l~s~s---~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p-dg~~ 371 (504)
.-++|.++++-+. .. .+++++ .+|.+++.. .|-... ........+ ...++.+.... ++.+
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPG-VTGIWTLKLSSSDHSY 373 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCC-ceEEEEeeecCCCceE
Confidence 3478988888532 11 555554 467888763 332222 211110111 23344444333 2456
Q ss_pred EEEEeCCCcEEEEEcC---CCceeee-----eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCC
Q 010669 372 LGTGTSEALVKIWDVK---SQANVAK-----FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET 443 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~---~~~~~~~-----~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~ 443 (504)
|+.+..+. -+++.+. ....+.. |......+.+-.+. +..++=.+..+|++.+....+....+.... ..
T Consensus 374 lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~-~~ 449 (504)
T PF10433_consen 374 LVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPA-GS 449 (504)
T ss_dssp EEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TT-S-
T ss_pred EEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCC-CC
Confidence 66665543 4455553 2333322 22122234333333 556666777789999988777776665542 45
Q ss_pred CeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEee
Q 010669 444 PTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFV 498 (504)
Q Consensus 444 ~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~ 498 (504)
.|...+... +..+++.+.. +.++.++...-........ ... .+.|.|+...|
T Consensus 450 ~I~~a~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~eis~l~i~p 503 (504)
T PF10433_consen 450 IIVAASIND-PQVLVALSGGELVYFELDDNKISVSDNDETILEL--DNEISCLSIEP 503 (504)
T ss_dssp --SEEEESS-SEEEEEE-TTEEEEEEEETTEEEEEEE----EE---SS-EEEEE---
T ss_pred eEEEEEECC-CEEEEEEeCCcEEEEEEECCceeeeeeccccccC--CCceEEEEeCC
Confidence 677666654 3444444444 8888884422111111010 012 56789988765
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.68 E-value=3.4 Score=45.09 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCc-----eeeeeeCCC----------CCeEEEEEcCCCcEEEEEeCCc
Q 010669 358 EGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA-----NVAKFDGHV----------GAVTAISFSENGYYLATAAHDG 421 (504)
Q Consensus 358 ~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~-----~~~~~~~~~----------~~i~~l~~s~~g~~l~s~~~d~ 421 (504)
.+...++|+| +...||+....|...|||+.... .+.....+. ..-..|.|.++-..|+.++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4678899999 66799999999999999992111 111111111 2334788988888899888888
Q ss_pred EEEEEcCCCcceeeeecCCCCCCeeEEEECCC--CCEEEEEeCcEEEEEeeccCccceeEEEc
Q 010669 422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS--GSYLAVASADIRVYQVASVKADWNCIKTF 482 (504)
Q Consensus 422 v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~--g~~l~~~~~di~vw~~~~~~~~~~~i~~~ 482 (504)
+.++|+.+......+........|..+.-++. +..++-.+..|...++.........+.++
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSw 288 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSW 288 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeec
Confidence 99999987765332333333567888888876 44444444447666764422234444444
No 455
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.63 E-value=0.57 Score=48.77 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=72.1
Q ss_pred cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcC-
Q 010669 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVK- 387 (504)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~- 387 (504)
....-+.-+.-++..++-+....+.|||.+.+..-..... .....|..+.|.. ||+.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence 3444454555455555544556799999998875444321 3356799999865 88888888888888887531
Q ss_pred ----C----Cceeeee--eCCC-CCeEEEEEcCCCcEEEEEeCCcEEEEEc
Q 010669 388 ----S----QANVAKF--DGHV-GAVTAISFSENGYYLATAAHDGVKLWDL 427 (504)
Q Consensus 388 ----~----~~~~~~~--~~~~-~~i~~l~~s~~g~~l~s~~~d~v~vwd~ 427 (504)
+ ..++..+ ..|. .+|.+..|.++|.++ +|+.+.+.|+|-
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk 155 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK 155 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence 1 1233333 2333 589999999999655 455556888764
No 456
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0043 Score=56.17 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=40.7
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPL 45 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 45 (504)
|-|-|+.+...+|||| +|||.|+..|-.+.++.+.+|++|+++.
T Consensus 242 f~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhh-cCCceeehhhhccccccCCcceeccccc
Confidence 3499999999999999 7999999999999999999999999764
No 457
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=2 Score=39.79 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=116.2
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE---EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 301 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 301 (504)
-+..+.++ +++...+..+.-++|+|+.+..... .+.. .+--.++. -.|++...+..|.-+.+.|+.+.....
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34455555 5677777777779999987654332 2221 12233333 368898888867778899998876556
Q ss_pred eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 381 (504)
Q Consensus 302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I 381 (504)
....+......-..++.+ |++-..+..|+-+.+.|+........+... .....+.++..+++-.+++..+ --+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~---n~g~g~~sv~vsdnr~y~vvy~--egv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY---NTGPGTYSVSVSDNRAYLVVYD--EGV 235 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE---ecCCceEEEEecCCeeEEEEcc--cce
Confidence 666665555555666664 888888889999999999876544333211 1122677888887766666543 346
Q ss_pred EEEEcCCCceeeeeeC--CCC--CeEEEEEcCCCcEEEEEeCC-cEEEEEcCC
Q 010669 382 KIWDVKSQANVAKFDG--HVG--AVTAISFSENGYYLATAAHD-GVKLWDLRK 429 (504)
Q Consensus 382 ~iwd~~~~~~~~~~~~--~~~--~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~ 429 (504)
.+-|....+....+.. ... .++.+.. .|.+......+ ++.+-|+.+
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccC
Confidence 6777766654444321 112 2232344 44555555444 366666654
No 458
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.043 Score=48.55 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=42.6
Q ss_pred CccccCCCCCCCc----eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccccc
Q 010669 1 MNCSISGEVPEEP----VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIK 54 (504)
Q Consensus 1 ~~c~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 54 (504)
|+|+|+|-.|-.- ++- -|||||+-+.+.+.= ...|++||.+...+|.|.|.
T Consensus 112 fiCPvtgleMng~~~F~~l~-~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALR-CCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred eecccccceecceEEEEEEe-ccceeccHHHHHHhh--hccccccCCcccccCeEeeC
Confidence 5899999998773 445 499999999887654 45699999999999999994
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=95.37 E-value=2.9 Score=40.59 Aligned_cols=150 Identities=12% Similarity=0.118 Sum_probs=86.4
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEE-EECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 010669 310 TAEVQAVTVHATNKYFVTASLDNTWCF-YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS 388 (504)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~ 388 (504)
.+.+.++.+.|++.+++++ ..|.+.. +| ..++....+.. .....++.+.+.+++..+++| ..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 4578899999987666554 4554443 22 22222322221 234578999999999987776 457665322333
Q ss_pred CceeeeeeC----CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeec-CCCCCCeeEEEECCCCCEEEEEeCc
Q 010669 389 QANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD 463 (504)
Q Consensus 389 ~~~~~~~~~----~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d 463 (504)
+........ ....+..+.|.+++..++++ .++..+.....++....... .......+.+.|..++..+++|...
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 333222211 12357889999988766655 45544455555555444432 1112357788888777777766655
Q ss_pred -EEEE
Q 010669 464 -IRVY 467 (504)
Q Consensus 464 -i~vw 467 (504)
|--|
T Consensus 324 ~il~~ 328 (334)
T PRK13684 324 VLLRY 328 (334)
T ss_pred eEEEe
Confidence 4433
No 460
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=95.32 E-value=0.0059 Score=53.11 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=42.8
Q ss_pred ccccCCCCCCCceEeCCCCeeeeHHHHHHHHH--hcCCCCC--CCCCCCCCccc
Q 010669 2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL--DYGKCPV--TGEPLTMDDIV 51 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~--~~~~~~~~~~~ 51 (504)
.|+|+-.+...|.+|.|+.|.|||.+|.+|++ ..-.||. |.+.+.+++++
T Consensus 191 rCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v 244 (275)
T COG5627 191 RCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV 244 (275)
T ss_pred cCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh
Confidence 49999999999999999999999999999999 3345997 66677777665
No 461
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=2.4 Score=39.24 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=97.9
Q ss_pred ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669 265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344 (504)
Q Consensus 265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~ 344 (504)
.+-+..+.++ +++...+..+.-++|.|+.+......+..+.. .+--.++.. .|++...+..|.-+.+.|+.+...
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 3446677774 56777777888899999998765444444432 233444444 589999998777778888876543
Q ss_pred EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc
Q 010669 345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHDG 421 (504)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~ 421 (504)
........ .....-..++.+ |++-..+..|+-+.+.|+.+... +.... ....+.++..+++.-+++..+ .+
T Consensus 161 P~lagrya--~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~-eg 234 (370)
T COG5276 161 PQLAGRYA--LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD-EG 234 (370)
T ss_pred ceeeeeec--cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc-cc
Confidence 32221110 111112344444 66777778899999999976532 22222 233788888887766665543 34
Q ss_pred EEEEEcCCCcceeee
Q 010669 422 VKLWDLRKLKNFRSF 436 (504)
Q Consensus 422 v~vwd~~~~~~~~~~ 436 (504)
+.+-|....+....+
T Consensus 235 vlivd~s~~ssp~~~ 249 (370)
T COG5276 235 VLIVDVSGPSSPTVF 249 (370)
T ss_pred eEEEecCCCCCceEe
Confidence 666776655543333
No 462
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.26 E-value=0.014 Score=37.51 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=31.9
Q ss_pred cccCCCCC---CCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCC
Q 010669 3 CSISGEVP---EEPVVSKNSGLLFEKRLIERHILDYGKCPVTGE 43 (504)
Q Consensus 3 c~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 43 (504)
|+|..+.. ..|+++ ..||+|..++|.+.......||+.++
T Consensus 2 C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLT-SCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEc-ccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 77777776 357888 59999999999999955557999763
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.13 E-value=1.9 Score=42.90 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=87.0
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-------EEEEEeCCCeEEEEECCC-CeEEE
Q 010669 276 EGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSS-GICLT 346 (504)
Q Consensus 276 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------~l~s~s~dg~i~iwd~~~-~~~~~ 346 (504)
+.++|+ .|+.-..+.-.|++.+ +.+.....|... -+.|.|..+ .-++|-.+..|.-.|.+- |..+.
T Consensus 478 dssli~~dg~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 444443 4445556666666665 556666666553 566777532 233444555565556553 32232
Q ss_pred EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEE
Q 010669 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD 426 (504)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd 426 (504)
....... .......|..-. ...++++++..|-|++||--.-.....+.+....|..+..+.+|.++++.+...+.+-|
T Consensus 553 v~esKdY-~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d 630 (776)
T COG5167 553 VVESKDY-KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTD 630 (776)
T ss_pred eeeehhc-cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEe
Confidence 2221111 111222333322 34589999999999999954333334456667789999999999999998887788888
Q ss_pred cC
Q 010669 427 LR 428 (504)
Q Consensus 427 ~~ 428 (504)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 75
No 464
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=95.07 E-value=0.038 Score=42.30 Aligned_cols=52 Identities=33% Similarity=0.510 Sum_probs=35.1
Q ss_pred ccccCCCCCCCceEeCCCC-----eeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669 2 NCSISGEVPEEPVVSKNSG-----LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (504)
Q Consensus 2 ~c~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (504)
.|+|+-++|++-|.-..++ ..|.+..+.+.+.+++.-|.|+||++.+-+|..
T Consensus 42 ~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~k 98 (113)
T PF06416_consen 42 TCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVSK 98 (113)
T ss_dssp -BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-T
T ss_pred CCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEech
Confidence 5999999999999865444 479999999999999999999999999888764
No 465
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.01 E-value=0.15 Score=47.69 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=38.9
Q ss_pred ccccCCCC-CCCc----eEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCCCcccc
Q 010669 2 NCSISGEV-PEEP----VVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVP 52 (504)
Q Consensus 2 ~c~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~ 52 (504)
.|+||..- ...| .|+ .|||.||+.||+..+... +.||.|+.+|..+.+.+
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 59998873 3333 556 599999999999987654 57999999999887643
No 466
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.024 Score=53.75 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=47.7
Q ss_pred ccccCCCCCCCc---eEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCCCccccccCCCccC-CCCCCCCChhhHHH
Q 010669 2 NCSISGEVPEEP---VVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPIKTGKIVK-PRPLTAASIPGMLG 74 (504)
Q Consensus 2 ~c~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sip~ll~ 74 (504)
.|+||-|-.++- ++=| |+|.|=+.||..||.++++ ||+|.+...-+-.++.....++. +.-|+..+|+++++
T Consensus 231 ~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~~~~~~~~~~s 307 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGPSSNSLSNLAS 307 (348)
T ss_pred eEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCCCccccccccc
Confidence 699999886552 4454 9999999999999999987 99999855544444443332221 12233355555544
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.87 E-value=4.5 Score=40.14 Aligned_cols=135 Identities=9% Similarity=0.105 Sum_probs=77.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcc-----
Q 010669 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN----- 432 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~----- 432 (504)
...+...+||.++++|.....++-||--.. +.+ . ......++.+.|.++|.+++++.. +-.+|....++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEeCC-ceEEEecCCCCcccccc
Confidence 445667788888887765444444543211 111 1 123457899999999988877644 433444444432
Q ss_pred eeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669 433 FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG 500 (504)
Q Consensus 433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g 500 (504)
............+..+.|.+++..+++|... .++......++|+....-..- ......+.|..++
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~G~tW~~~~~~~~~--~~~ly~v~f~~~~ 382 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG-ILLRSTDGGKSWKRDKGADNI--AANLYSVKFFDDK 382 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCC-cEEEeCCCCcceeEccccCCC--CcceeEEEEcCCC
Confidence 2222221113458899999888877766655 333333445678776543332 4567777776644
No 468
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.037 Score=51.78 Aligned_cols=52 Identities=17% Similarity=0.423 Sum_probs=41.8
Q ss_pred ccccCCCCCCCc---------eEeCC---CCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669 2 NCSISGEVPEEP---------VVSKN---SGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53 (504)
Q Consensus 2 ~c~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 53 (504)
+|.||.+-+-+| =++|| |||++--.|+..|++...+||||+.|+--|+=-++
T Consensus 289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~~~ 352 (491)
T COG5243 289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPT 352 (491)
T ss_pred eEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCCCC
Confidence 699998763332 24444 99999999999999999999999999887766544
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.76 E-value=2.2 Score=37.85 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=82.9
Q ss_pred CEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC---C---cEEEE-EcCC----C
Q 010669 323 KYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---A---LVKIW-DVKS----Q 389 (504)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d---g---~I~iw-d~~~----~ 389 (504)
+.|+.+...+.|.+|++... .....+. .-+.|..+.++..|+++++--.+ . .+|+| |.+. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 55555567788999999833 3344443 22579999999999999985432 2 56664 2221 1
Q ss_pred ceee-eeeCC---------------------CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcc-ee---eeec-----
Q 010669 390 ANVA-KFDGH---------------------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN-FR---SFES----- 438 (504)
Q Consensus 390 ~~~~-~~~~~---------------------~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~-~~---~~~~----- 438 (504)
.++. .+-|| ..++.+++-.|...-|+.|+.+.+.+|.+..... .. .++.
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhh
Confidence 2221 12221 3367788888854456677777788998764332 11 1111
Q ss_pred -CCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669 439 -SDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 439 -~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~ 469 (504)
+..+..+..++| -+.|+|..+.. ++++.+
T Consensus 183 ~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 183 DHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred heecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 111222445555 46788888887 888876
No 470
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.74 E-value=0.0074 Score=55.77 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=41.4
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM 47 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 47 (504)
|.|.+++-.+.++-..+-|=|+|+|.||.+||+++-.||.++-.+--
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 57999999999997666799999999999999999999999965543
No 471
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.72 E-value=1.5 Score=43.53 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-------EEEEEeCCCcEEEEEcCCC-ce
Q 010669 321 TNKYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-------ILGTGTSEALVKIWDVKSQ-AN 391 (504)
Q Consensus 321 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-------~l~~g~~dg~I~iwd~~~~-~~ 391 (504)
+.++|+ .|+.-..++-.|++.|+.+...... ..+ -+.|.|+.+ .-++|-++..|.-.|.|-. ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLK------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecC------Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 334433 4555667888899999888777532 123 566777432 2344556666666677643 22
Q ss_pred eee--eeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EE
Q 010669 392 VAK--FDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IR 465 (504)
Q Consensus 392 ~~~--~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~ 465 (504)
+.. ++. .....++..-..+ -|+++++..| |++||--..+.-..++.. ...|..+..+.+|.++++.+.. +.
T Consensus 551 i~v~esKdY~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred eeeeeehhccccccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEeecceEE
Confidence 222 111 1112333333334 4788888888 999995432222223332 5689999999999999988888 77
Q ss_pred EEEe
Q 010669 466 VYQV 469 (504)
Q Consensus 466 vw~~ 469 (504)
+-++
T Consensus 628 L~d~ 631 (776)
T COG5167 628 LTDV 631 (776)
T ss_pred EEec
Confidence 7776
No 472
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.63 E-value=0.016 Score=57.11 Aligned_cols=52 Identities=27% Similarity=0.462 Sum_probs=48.7
Q ss_pred CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 010669 1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVP 52 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 52 (504)
+.|+|+..+..+|+-+..+||.|++.+|.+++..+.+||.....++.+++++
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 3699999999999997569999999999999999999999999999999887
No 473
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.47 E-value=2.4 Score=44.78 Aligned_cols=148 Identities=8% Similarity=0.069 Sum_probs=90.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceE------EEcc----------------cCccceeEEEEee--CCCEEEEEeCCCcEE
Q 010669 235 KDVIATGGVDTNAVLFDRPSGQIV------TTLS----------------GHSKKVTSVKFVT--EGDLFLTGSADKTVR 290 (504)
Q Consensus 235 ~~~l~sg~~dg~i~vwd~~~~~~~------~~~~----------------~h~~~v~~l~~s~--~~~~l~s~s~dg~i~ 290 (504)
.++++++. .+.|.||+...-... ..+. .....|+.+.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777765 678999986532211 0110 0112355555443 445799999999999
Q ss_pred EEeCCC-------C----C------CcceeEEeccCCcCeEEEEEc--cCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669 291 VWQGSE-------D----G------NYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351 (504)
Q Consensus 291 iwd~~~-------~----~------~~~~~~~~~~h~~~v~~l~~~--p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (504)
+|.++. . . ...+...+. -...+++++++ ...++||+++....|.||-............
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~- 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP- 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc-
Confidence 996421 0 0 011222222 23578999999 7788899998888888876543211111100
Q ss_pred CCCCCCCCeEEEEECCCC---C---EEEEEeCCCcEEEEEc
Q 010669 352 GTDGRPEGYTSAAFHPDG---L---ILGTGTSEALVKIWDV 386 (504)
Q Consensus 352 ~~~~~~~~v~~~~~~pdg---~---~l~~g~~dg~I~iwd~ 386 (504)
...+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 206 -s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 -SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11244568899998733 2 7888889999999887
No 474
>PRK10115 protease 2; Provisional
Probab=94.46 E-value=8.5 Score=41.46 Aligned_cols=191 Identities=5% Similarity=-0.013 Sum_probs=96.6
Q ss_pred cceeEEEEeeCCCEEEEEeC-C----CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC------CeE
Q 010669 266 KKVTSVKFVTEGDLFLTGSA-D----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTW 334 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~s~s~-d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i 334 (504)
-.+..+.|+|++++|+.+.. + ..|++.|+.++.. ....+.+ .-..++|.++++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34677889999998775532 2 3578888876421 1112211 11469999999876665442 368
Q ss_pred EEEECCCC--eEEEEeecCCCCCCCCCeE-EEEECCCCCEEEEEeC---CCcEEEEEcC--CCceeeeeeCCCCCeEEEE
Q 010669 335 CFYDLSSG--ICLTQVSDAGTDGRPEGYT-SAAFHPDGLILGTGTS---EALVKIWDVK--SQANVAKFDGHVGAVTAIS 406 (504)
Q Consensus 335 ~iwd~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~pdg~~l~~g~~---dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~ 406 (504)
..+++.++ +....+... ..... .+..+.|+++++..+. ++.+.+|+.. .+.....+....+....+.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~-----~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEK-----DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD 276 (686)
T ss_pred EEEECCCChhHCeEEEeeC-----CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence 88888887 333333211 11222 3344548877665443 3578888853 3332222222222233332
Q ss_pred EcCCCcEEEEEeCC--c--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE-eCc--EEEEEe
Q 010669 407 FSENGYYLATAAHD--G--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA-SAD--IRVYQV 469 (504)
Q Consensus 407 ~s~~g~~l~s~~~d--~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~-~~d--i~vw~~ 469 (504)
+..+.+++....+ . |...++........+..+.....+..+.+. +++|+.. ..+ -+++-+
T Consensus 277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 3234444443333 2 444455422222333333223467778776 3444444 333 444444
No 475
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.46 E-value=7 Score=40.45 Aligned_cols=220 Identities=11% Similarity=0.104 Sum_probs=98.4
Q ss_pred CCeEEEEeccCC-CEEEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeC----CC------EEEEEe---CCC
Q 010669 224 PGIVSLDIHYSK-DVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD------LFLTGS---ADK 287 (504)
Q Consensus 224 ~~I~~~~~s~~~-~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~----~~------~l~s~s---~dg 287 (504)
+..+++.+-.+| .+|+.|+.-| .+.-|....-+.+..+. .-++|.++++.+. .. .|++++ .+|
T Consensus 256 ~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~g 334 (504)
T PF10433_consen 256 SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRG 334 (504)
T ss_dssp S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-
T ss_pred ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCC
Confidence 344455555444 4777777544 45455544445555555 4578988888531 11 455554 578
Q ss_pred cEEEEeCCCCCCcc-eeEEeccC--CcCeEEEEEcc-CCCEEEEEeCCCeEEEEECC---CCeEEEEeecCCCCCCCCCe
Q 010669 288 TVRVWQGSEDGNYD-CKHTLKDH--TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLS---SGICLTQVSDAGTDGRPEGY 360 (504)
Q Consensus 288 ~i~iwd~~~~~~~~-~~~~~~~h--~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v 360 (504)
.+++..-.-+- . ........ -..++.+.... ++.+++.+..+.+ +++.+. ....+..+...+.......+
T Consensus 335 sL~~lr~Gi~~--~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl 411 (504)
T PF10433_consen 335 SLRILRNGIGI--EGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTL 411 (504)
T ss_dssp EEEEEEESBEE--E--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EE
T ss_pred cEEEEeccCCc--eeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCe
Confidence 88888532211 1 01111111 23445554432 2456666655543 455553 23333222111121222233
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCC-cEEEEEcCCCcceeeeec
Q 010669 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFES 438 (504)
Q Consensus 361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 438 (504)
.+..+. +..++=.+. ..|++.+...++....+.. ....|.+.+.+ +.+++.+..+ .+.++.+...........
T Consensus 412 ~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 486 (504)
T PF10433_consen 412 AAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDND 486 (504)
T ss_dssp EEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE-
T ss_pred EEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeec
Confidence 333333 333443343 3488888877777766543 33456666663 3444444444 488888876554332221
Q ss_pred C---CCCCCeeEEEECC
Q 010669 439 S---DSETPTNSVDFDH 452 (504)
Q Consensus 439 ~---~~~~~v~~i~~~~ 452 (504)
. .....|.++...|
T Consensus 487 ~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 487 ETILELDNEISCLSIEP 503 (504)
T ss_dssp ---EE-SS-EEEEE---
T ss_pred cccccCCCceEEEEeCC
Confidence 1 1246788887765
No 476
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.45 E-value=4.3 Score=37.96 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=127.5
Q ss_pred eEEEEeccCCCEEEEEeCCCcEEEEcCC-------CCceEEEccc-----CccceeEEEEeeCCC------------EEE
Q 010669 226 IVSLDIHYSKDVIATGGVDTNAVLFDRP-------SGQIVTTLSG-----HSKKVTSVKFVTEGD------------LFL 281 (504)
Q Consensus 226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~-------~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~l~ 281 (504)
-+-|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3678999998887887788899999986 1123333331 224577777764222 367
Q ss_pred EEeCCCcEEEEeCCCCCCc--ceeEEec-cCCcCe-EEEEEcc--CCCEEEEEe-CCCeEEEEECCCCeEEE--EeecCC
Q 010669 282 TGSADKTVRVWQGSEDGNY--DCKHTLK-DHTAEV-QAVTVHA--TNKYFVTAS-LDNTWCFYDLSSGICLT--QVSDAG 352 (504)
Q Consensus 282 s~s~dg~i~iwd~~~~~~~--~~~~~~~-~h~~~v-~~l~~~p--~~~~l~s~s-~dg~i~iwd~~~~~~~~--~~~~~~ 352 (504)
.++.||+|.-|...-+... .....+. ...+.| ..+++.. .+++|..+. ..++|.+||-.=.+... .+....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 7899999999985433210 1112221 112333 3455543 345555553 47889998854222110 011000
Q ss_pred CC-----------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcC------CCcE
Q 010669 353 TD-----------GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSE------NGYY 413 (504)
Q Consensus 353 ~~-----------~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~------~g~~ 413 (504)
.. +..-.|+...-.++++.=+.|-.-|.|-+||+ .+..++++. +.-.....|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00 00111222223333333334445578999997 667777774 2334556677766 4666
Q ss_pred EEEEeCCc-EEEEEcCCCcceeeeecCCC----CCCeeEEEECC
Q 010669 414 LATAAHDG-VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDH 452 (504)
Q Consensus 414 l~s~~~d~-v~vwd~~~~~~~~~~~~~~~----~~~v~~i~~~~ 452 (504)
|+.--.|| |..||..+++.+-.+..... ....+.+.|-.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66665677 99999998887666554321 23467788765
No 477
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.23 E-value=1.6 Score=35.43 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=68.8
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCC--------ceeeeeeCCCCCeEEEEEcC-----CCcEEEEEeCCcEEEEEcC
Q 010669 362 SAAFHPDGLILGTGTSEALVKIWDVKSQ--------ANVAKFDGHVGAVTAISFSE-----NGYYLATAAHDGVKLWDLR 428 (504)
Q Consensus 362 ~~~~~pdg~~l~~g~~dg~I~iwd~~~~--------~~~~~~~~~~~~i~~l~~s~-----~g~~l~s~~~d~v~vwd~~ 428 (504)
.-.|......|++++..|.|.|++.... ..+..+. -...|++|+-.+ +...|+.|+...+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 3456666667889999999999987533 2333333 445677775433 4568888988889999998
Q ss_pred CCcceeeeecCCCCCCeeEEEECC----CCCEEEEEeCc-EEEEEe
Q 010669 429 KLKNFRSFESSDSETPTNSVDFDH----SGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~i~~~~----~g~~l~~~~~d-i~vw~~ 469 (504)
....+..-..+ ..++++.+-. +...+++|++- |.-||.
T Consensus 82 ~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 82 NNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred cCchhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 87665444443 4577766632 45666666665 777764
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.17 E-value=1.7 Score=39.78 Aligned_cols=149 Identities=16% Similarity=0.222 Sum_probs=80.7
Q ss_pred EEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-C--CcEEEEeCCC-C--CCcceeEEeccCCcCeEEEEEcc
Q 010669 247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-D--KTVRVWQGSE-D--GNYDCKHTLKDHTAEVQAVTVHA 320 (504)
Q Consensus 247 i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-d--g~i~iwd~~~-~--~~~~~~~~~~~h~~~v~~l~~~p 320 (504)
-.+||+.+++....-....--+.+-.+.+||++|.+|+. + ..+++++... . ..+......-.....--....-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888776553322222223334456789999998875 2 3578887654 1 11111110011122223444567
Q ss_pred CCCEEEEEeCCC-eEEEEECCCC-eEEEEe---ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 010669 321 TNKYFVTASLDN-TWCFYDLSSG-ICLTQV---SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395 (504)
Q Consensus 321 ~~~~l~s~s~dg-~i~iwd~~~~-~~~~~~---~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~ 395 (504)
||+.|+.|+.+. +..+|.-... .....+ ..........-...+...|||++|+.+..++ .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999888765 3455554221 111111 1000011123345678889999999987654 45788888776666
Q ss_pred eC
Q 010669 396 DG 397 (504)
Q Consensus 396 ~~ 397 (504)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=1.2 Score=43.48 Aligned_cols=146 Identities=9% Similarity=0.044 Sum_probs=87.5
Q ss_pred eEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669 269 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 348 (504)
Q Consensus 269 ~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (504)
+.+-|. |.+..+.+-..|.+.-|-+...+.-.++..-....++|.++.|++|.+.+++--.|.+|.+++....+.....
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 334443 3333333444455666655443322233333345679999999999999999999999999988544332222
Q ss_pred ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669 349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA 418 (504)
Q Consensus 349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~ 418 (504)
.. ........|....|+.+ .-+|.....| +.+|-.... +.++..+.|...|+--.|.++...++.++
T Consensus 105 ~~-~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQ-ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HH-HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 11 01233456888999876 3455544444 666665432 33445566777888888888776544443
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.11 E-value=4.9 Score=38.91 Aligned_cols=160 Identities=13% Similarity=0.215 Sum_probs=95.0
Q ss_pred cCeEEEEEccCCCEEEEEeCCCe------EEEEECCCC----eEEEEe---ecCCCCCC-----CCCeEEEEECCCCCEE
Q 010669 311 AEVQAVTVHATNKYFVTASLDNT------WCFYDLSSG----ICLTQV---SDAGTDGR-----PEGYTSAAFHPDGLIL 372 (504)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s~dg~------i~iwd~~~~----~~~~~~---~~~~~~~~-----~~~v~~~~~~pdg~~l 372 (504)
+.+..|.+.+++..+++.+.+|. +..+++... ..+... ......+. ....-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788889877777777788887 666665541 111111 00001111 1134578887788888
Q ss_pred EEEeCC------CcEEEEEcCCCceeeeee---------------CCCCCeEEEEEcCCCcEEEEEeCCc----------
Q 010669 373 GTGTSE------ALVKIWDVKSQANVAKFD---------------GHVGAVTAISFSENGYYLATAAHDG---------- 421 (504)
Q Consensus 373 ~~g~~d------g~I~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~g~~l~s~~~d~---------- 421 (504)
++.-.+ ..|+.+|.. ++.+..+. ..+...-.|+++|+|..|+++.+..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877666 788888865 55544331 1345788999999999766653221
Q ss_pred -----EEE--EEcCC-Ccceee--eecCC-----CCCCeeEEEECCCCCEEEEEeC-----c--EEEEEeec
Q 010669 422 -----VKL--WDLRK-LKNFRS--FESSD-----SETPTNSVDFDHSGSYLAVASA-----D--IRVYQVAS 471 (504)
Q Consensus 422 -----v~v--wd~~~-~~~~~~--~~~~~-----~~~~v~~i~~~~~g~~l~~~~~-----d--i~vw~~~~ 471 (504)
+++ ||..+ +..... +.... ....+..+.+-+++++|+.=-. . ++||.++.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 344 45444 322222 22221 3567889999999998774311 2 77777653
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.04 E-value=1.3 Score=48.94 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=87.6
Q ss_pred eCCCcEEEEcCCCCceEEEcccCccceeEEEEe-e-------CCCEEEEEeCCCcEEEEeCCCCCC------cceeEEec
Q 010669 242 GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-T-------EGDLFLTGSADKTVRVWQGSEDGN------YDCKHTLK 307 (504)
Q Consensus 242 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-~-------~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~ 307 (504)
+.|+.+.+|+.+++.....+.+-...|..|..- | .=++++.-+.--.|.++-+.-+.. +.....+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 357889999999988788888777777777643 2 223344334444566665432211 11112222
Q ss_pred cCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC----CCCe----EEE-------------EeecCCCCCCCCCeEEEEEC
Q 010669 308 DHTAEVQAVTVHATNKYFVTASLDNTWCFYDL----SSGI----CLT-------------QVSDAGTDGRPEGYTSAAFH 366 (504)
Q Consensus 308 ~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~----~~~~----~~~-------------~~~~~~~~~~~~~v~~~~~~ 366 (504)
.....|.++....+|+.|++|- || .+|.+ ..+- +.+ .+... ...+..+|..+...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~-~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV-PGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC-CCCCCCcceeeEec
Confidence 3345688998777887777664 45 33432 2211 100 00000 11456789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC
Q 010669 367 PDGLILGTGTSEALVKIWDVKS 388 (504)
Q Consensus 367 pdg~~l~~g~~dg~I~iwd~~~ 388 (504)
..-.++.+-+..|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 9999999999999999999965
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.02 E-value=9.2 Score=40.12 Aligned_cols=241 Identities=11% Similarity=0.098 Sum_probs=122.8
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcC-CCCceEEEcc-cCccceeEEEEeeC---CCEEEEEeCCCc-EEEEeCCCC-
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDR-PSGQIVTTLS-GHSKKVTSVKFVTE---GDLFLTGSADKT-VRVWQGSED- 297 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~-~~~~~~~~~~-~h~~~v~~l~~s~~---~~~l~s~s~dg~-i~iwd~~~~- 297 (504)
.+.+..++|+.+.+-.|=....|.-|=+ .+.+.+..+. ..+..|.|+..... .+..+.|-.++. -++-.+..+
T Consensus 29 ~~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~ 108 (670)
T PF10395_consen 29 LQVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV 108 (670)
T ss_pred eeeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence 3444577888887665544444444432 3456666654 34456777766432 224444433332 343333221
Q ss_pred ---------CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-
Q 010669 298 ---------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 367 (504)
Q Consensus 298 ---------~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p- 367 (504)
........+. -.+.|.++.|.++++.+++...+|.|.+||...+......... . .+...+..-.|-+
T Consensus 109 ~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~-~-~~~~~v~ys~fv~~ 185 (670)
T PF10395_consen 109 GSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLK-L-KSSINVSYSKFVND 185 (670)
T ss_pred ccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccc-c-ccccceehhhhhcc
Confidence 1001122222 3577999999999999999999999999999333222111100 0 1111111112222
Q ss_pred -----CCCEEEEEeC-C---CcEEEEEcC-CCceeeeee---CCCCCeEEEEEcC-CCcEEEEEeCCcEEEEEcCCCcce
Q 010669 368 -----DGLILGTGTS-E---ALVKIWDVK-SQANVAKFD---GHVGAVTAISFSE-NGYYLATAAHDGVKLWDLRKLKNF 433 (504)
Q Consensus 368 -----dg~~l~~g~~-d---g~I~iwd~~-~~~~~~~~~---~~~~~i~~l~~s~-~g~~l~s~~~d~v~vwd~~~~~~~ 433 (504)
...++++-+. + -..+++.+. ....+..+. .+........|+- +|. |.--..+.|.+|++...+..
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQLSKKTISSYSIPNFQIQ 264 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEEeCCEEEEEEcCCceEE
Confidence 1233333333 2 246777771 223333332 1222333344443 454 33334445999999998887
Q ss_pred eeeecCCC---C-CCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669 434 RSFESSDS---E-TPTNSVDFDHSGSYLAVASADIRVYQV 469 (504)
Q Consensus 434 ~~~~~~~~---~-~~v~~i~~~~~g~~l~~~~~di~vw~~ 469 (504)
.++..... . ..+.++.--...+.|++..+.|.+.|+
T Consensus 265 ~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 265 KTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDL 304 (670)
T ss_pred EEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEee
Confidence 77766421 1 234444322234555555555999998
No 483
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.99 E-value=0.11 Score=34.44 Aligned_cols=44 Identities=27% Similarity=0.435 Sum_probs=28.5
Q ss_pred CccccCCCCCCCceEeCCCCee--eeHHHHHHHHHhcCC--CCCCCCC
Q 010669 1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYGK--CPVTGEP 44 (504)
Q Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~p~~~~~ 44 (504)
+.|+||+..++.||=+..+-|. |+-....++-+++++ ||+++++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4699999999999999777775 998777777776664 9999875
No 484
>PLN02153 epithiospecifier protein
Probab=93.84 E-value=6.9 Score=38.09 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=71.5
Q ss_pred CCCEEEEEeCC-------CcEEEEcCCCCceEEEcccCc---c----ceeEEEEeeCCCEEEEEeCC-----CcEEEEeC
Q 010669 234 SKDVIATGGVD-------TNAVLFDRPSGQIVTTLSGHS---K----KVTSVKFVTEGDLFLTGSAD-----KTVRVWQG 294 (504)
Q Consensus 234 ~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~h~---~----~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~ 294 (504)
++.+++.|+.+ ..+.+||..+.+-. .+.... . ....+.+ ++.+++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666777653 25778888765432 221110 0 1112222 56677777753 35778887
Q ss_pred CCCCCcceeEEecc---CCcC-eEEEEEccCCCEEEEEeCC-----------CeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669 295 SEDGNYDCKHTLKD---HTAE-VQAVTVHATNKYFVTASLD-----------NTWCFYDLSSGICLTQVSDAGTDGRPEG 359 (504)
Q Consensus 295 ~~~~~~~~~~~~~~---h~~~-v~~l~~~p~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 359 (504)
.+ ..+..+..+.. .... -.+++. -+++.++.|+.+ ..+.+||..+..-.. +...........
T Consensus 109 ~t-~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~ 185 (341)
T PLN02153 109 VK-NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRG 185 (341)
T ss_pred CC-CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCC
Confidence 76 33333322210 1111 112222 256677777653 247788888765332 211100000111
Q ss_pred eEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 010669 360 YTSAAFHPDGLILGTGTSE-------------ALVKIWDVKSQA 390 (504)
Q Consensus 360 v~~~~~~pdg~~l~~g~~d-------------g~I~iwd~~~~~ 390 (504)
-.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 112222 256666665432 458889987653
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.81 E-value=7.2 Score=38.16 Aligned_cols=169 Identities=12% Similarity=0.204 Sum_probs=94.2
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC----CCCCE--EEEEe-CC---CcEEEEEcCCC
Q 010669 320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH----PDGLI--LGTGT-SE---ALVKIWDVKSQ 389 (504)
Q Consensus 320 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----pdg~~--l~~g~-~d---g~I~iwd~~~~ 389 (504)
|...+++....++-+.+||+... .+..+.. ..++.+..- -.|+. |++++ .+ ..|++|-+...
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~ 137 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD 137 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC
Confidence 34567888888999999999855 4444431 123333221 13332 33433 32 46999977531
Q ss_pred -ceeeeeeC-------CCCCeEEEEEc--C-CCc-EEEEEeCCc-EEEEEcC---CC----cceeeeecCCCCCCeeEEE
Q 010669 390 -ANVAKFDG-------HVGAVTAISFS--E-NGY-YLATAAHDG-VKLWDLR---KL----KNFRSFESSDSETPTNSVD 449 (504)
Q Consensus 390 -~~~~~~~~-------~~~~i~~l~~s--~-~g~-~l~s~~~d~-v~vwd~~---~~----~~~~~~~~~~~~~~v~~i~ 449 (504)
..+..+.. ....+..+|+. + +|. +.+....+| +..|.+. ++ +.++.|.. ...+..+.
T Consensus 138 ~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCV 214 (381)
T PF02333_consen 138 TGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCV 214 (381)
T ss_dssp TTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEE
T ss_pred CCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEE
Confidence 12332221 12346777774 3 354 555666667 7666664 33 35677766 35789999
Q ss_pred ECCCCCEEEEEeCcEEEEEeeccC---ccceeEEEccCCCCCCceeEEEEeec
Q 010669 450 FDHSGSYLAVASADIRVYQVASVK---ADWNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 450 ~~~~g~~l~~~~~di~vw~~~~~~---~~~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
.+....+|+.+-+++-||.+.-.. .....+....+..-...|..|.++..
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~ 267 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG 267 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec
Confidence 999999999999998888875432 23445555544323678899998853
No 486
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.79 E-value=11 Score=40.43 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=52.9
Q ss_pred CcCeEEEEEccCCCEEEEEeCCCeEEEEECC---------CCeE--E-EEee-c--CCCCCCCCCeEEEEECCC---CCE
Q 010669 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLS---------SGIC--L-TQVS-D--AGTDGRPEGYTSAAFHPD---GLI 371 (504)
Q Consensus 310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---------~~~~--~-~~~~-~--~~~~~~~~~v~~~~~~pd---g~~ 371 (504)
.-.|..+.++|+|.+++..|..|.+.+.=.+ .|+. . ..+. . .........|..+.|||. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3468999999999999998886644332211 1111 1 1111 0 001233467899999995 588
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 010669 372 LGTGTSEALVKIWDVKSQ 389 (504)
Q Consensus 372 l~~g~~dg~I~iwd~~~~ 389 (504)
|++=+.|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 889999999999999754
No 487
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.75 E-value=5.8 Score=42.59 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=52.0
Q ss_pred CeEEEEeccCCCEEEEEeCCCcEEEEcCCC----------Cce---EEEc--------ccCccceeEEEEeeC---CCEE
Q 010669 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS----------GQI---VTTL--------SGHSKKVTSVKFVTE---GDLF 280 (504)
Q Consensus 225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~----------~~~---~~~~--------~~h~~~v~~l~~s~~---~~~l 280 (504)
.|..|.++++|.+|+..|..|.+.+ .+.. |+. .+++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5889999999999999988765443 3321 111 1111 134567899999995 5688
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 010669 281 LTGSADKTVRVWQGSEDG 298 (504)
Q Consensus 281 ~s~s~dg~i~iwd~~~~~ 298 (504)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888999999999987543
No 488
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.55 E-value=0.018 Score=56.23 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=97.2
Q ss_pred eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEE-EEeCCCeEEEEECCCCeEEE
Q 010669 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDLSSGICLT 346 (504)
Q Consensus 268 v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~iwd~~~~~~~~ 346 (504)
.....|-+.+.-++.++.+..+..||-.. +..... ..++....++|.-+++.++ .+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq- 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ- 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence 34456777666688888888999998554 222222 2345667788887777544 4556789999999865422
Q ss_pred EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417 (504)
Q Consensus 347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~ 417 (504)
.+.. +....-.-+.|++.+..++.|...|.+.||+..+.+.+...-.|...+++++|.+.++.+..+
T Consensus 111 qLE~----gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 111 QLES----GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred HHhc----cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 2221 111222337899999999999999999999998877766665588899999999887654443
No 489
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.54 E-value=5.3 Score=43.42 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=86.0
Q ss_pred EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC--EEEEEe-----------CCCcEEEEEcC-CCceeeeeeC--
Q 010669 334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGT-----------SEALVKIWDVK-SQANVAKFDG-- 397 (504)
Q Consensus 334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~--~l~~g~-----------~dg~I~iwd~~-~~~~~~~~~~-- 397 (504)
|.++|..+++.+..+..... .....+..+.|+..+. ++++|. .+|.++.|++- .++.+.-+..
T Consensus 855 I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 67777777766655543211 2234566677776332 344443 24557777753 3443322221
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcc
Q 010669 398 HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 475 (504)
Q Consensus 398 ~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~ 475 (504)
-.++| .+..|.+.++++|-.+.+++||+-+.+.++..........|..+.+ .+..+++|... +.++.+. +.
T Consensus 934 ~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~---~~ 1006 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYR---RE 1006 (1205)
T ss_pred CCccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEe---cC
Confidence 12233 4566766677777766799999988777665554332445666665 45566666554 6666652 33
Q ss_pred ceeEEEccCCCCCCceeEEEEeec
Q 010669 476 WNCIKTFPDLSGTGAASFLFLFVL 499 (504)
Q Consensus 476 ~~~i~~~~~h~~~~~v~~l~~~~~ 499 (504)
.+.+..|-+..-.-.|+++.+...
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEEecC
Confidence 444444444323344555555433
No 490
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.44 E-value=3.8 Score=43.36 Aligned_cols=107 Identities=9% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCeEEEEECCC-------C----eE---EEEeecCCCCCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEE
Q 010669 321 TNKYFVTASLDNTWCFYDLSS-------G----IC---LTQVSDAGTDGRPEGYTSAAFH--PDGLILGTGTSEALVKIW 384 (504)
Q Consensus 321 ~~~~l~s~s~dg~i~iwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~~~~~--pdg~~l~~g~~dg~I~iw 384 (504)
....|+.|.+||.|.+|.+++ . .. ...+...-...-....+.++++ ...+++|+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 446889999999999997621 1 00 0000000001123468899999 888999999999988888
Q ss_pred EcCCC--ce-eeeeeCCCCCeEEEEEcCC-----Cc-EEEEEeCCc-EEEEEc
Q 010669 385 DVKSQ--AN-VAKFDGHVGAVTAISFSEN-----GY-YLATAAHDG-VKLWDL 427 (504)
Q Consensus 385 d~~~~--~~-~~~~~~~~~~i~~l~~s~~-----g~-~l~s~~~d~-v~vwd~ 427 (504)
-.... +. ...-..|...|-+|+|-++ |. +|++++-.| +.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66442 11 1111125567899999774 32 677777777 877777
No 491
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=5 Score=35.30 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=91.3
Q ss_pred CCCEEEEEeC--CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCC
Q 010669 234 SKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310 (504)
Q Consensus 234 ~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 310 (504)
+|.++.+.+. ...|++||+.+++.+.+-+-....+..=-...-++.+ .-.-.+|.-.++|..+- +++..+. ..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~-y~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFS-YE 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhcccc-cC
Confidence 4556666553 3469999999998876554222222211111123322 23346778888887664 4444432 23
Q ss_pred cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 010669 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 390 (504)
Q Consensus 311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~ 390 (504)
+.=+.++. ++..++.++...++..-|.++......+........-..++-+.|- ||.+.|-.-.+..|...|..+|+
T Consensus 131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 44566654 4555666655566777776554333222210000001122233332 45555544445555556666666
Q ss_pred eeeeee------------CCCCCeEEEEEcCCC-cEEEEE
Q 010669 391 NVAKFD------------GHVGAVTAISFSENG-YYLATA 417 (504)
Q Consensus 391 ~~~~~~------------~~~~~i~~l~~s~~g-~~l~s~ 417 (504)
.+..+. .|....+.|++.|++ +++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 544432 244567889999976 555554
No 492
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.22 E-value=7.4 Score=36.48 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=116.6
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC---C-CcceeEEecc-----CCcCeEEEEEccCCC------------EE
Q 010669 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSED---G-NYDCKHTLKD-----HTAEVQAVTVHATNK------------YF 325 (504)
Q Consensus 267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~---~-~~~~~~~~~~-----h~~~v~~l~~~p~~~------------~l 325 (504)
.-+.|+++|.+.+-++....+...+||.... + ....+.++.. .....+.+.|+.... .|
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3578999999988888888889999998621 1 1122333321 124567777765332 36
Q ss_pred EEEeCCCeEEEEECCCCeE-----EEEeecCCCCCCCCCeEEEEECC--CCCEE-EEEeCCCcEEEEEcCCCcee--eee
Q 010669 326 VTASLDNTWCFYDLSSGIC-----LTQVSDAGTDGRPEGYTSAAFHP--DGLIL-GTGTSEALVKIWDVKSQANV--AKF 395 (504)
Q Consensus 326 ~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~p--dg~~l-~~g~~dg~I~iwd~~~~~~~--~~~ 395 (504)
+.+++||+|.-|...-+.. ...+. .+ ........+++.. .+.+| ++--..++|.|||-.=.+.. ..|
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d-~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD-AS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc-cC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 8889999999998543322 11121 11 1123345566654 24444 44456789999985322111 011
Q ss_pred eCC----------------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC------
Q 010669 396 DGH----------------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH------ 452 (504)
Q Consensus 396 ~~~----------------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~------ 452 (504)
... .-.|+...-.+++..=+.|..-| |-+||+. ++.++++.....-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 100 00112222222222222222335 9999975 67777776544455667888766
Q ss_pred CCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669 453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 484 (504)
Q Consensus 453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~ 484 (504)
.|.+|+---.| |.+||. .++..+..+..
T Consensus 260 sg~lLVGNFGDG~InaFD~----~sG~~~g~L~~ 289 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDP----QSGAQLGQLLD 289 (336)
T ss_pred CCCeEEeecCCceeEEecC----CCCceeeeecC
Confidence 56666654445 999997 44555555544
No 493
>PHA02790 Kelch-like protein; Provisional
Probab=93.09 E-value=2.5 Score=43.39 Aligned_cols=144 Identities=11% Similarity=0.089 Sum_probs=70.4
Q ss_pred CCCEEEEEeCC--CcEEEEcCCCCceEEEcccCccceeE-EEEeeCCCEEEEEeCCC---cEEEEeCCCCCCcceeEEec
Q 010669 234 SKDVIATGGVD--TNAVLFDRPSGQIVTTLSGHSKKVTS-VKFVTEGDLFLTGSADK---TVRVWQGSEDGNYDCKHTLK 307 (504)
Q Consensus 234 ~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~ 307 (504)
++.+.+.||.+ ..+..||..+++-. .+..-..+... ....-+|...+.||.++ .+..||..+ +.|.....+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH-DQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC-CEEEeCCCCC
Confidence 56666777754 35777876554322 22211111111 11123677778877653 467888776 3344332222
Q ss_pred cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEE
Q 010669 308 DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVK 382 (504)
Q Consensus 308 ~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----g~I~ 382 (504)
...... +++ .-++...+.| |.+.+||.++++-... .. ........ +++ .-+|++.++|+.+ ..+.
T Consensus 396 ~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~-~~--m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 396 YPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLI-DD--PIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred Cccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEc-CC--CCCCcccc-EEE-EECCEEEEECCcCCCcccceEE
Confidence 111111 222 2256666666 4577899887654322 11 11111112 222 2267788888754 3456
Q ss_pred EEEcCCC
Q 010669 383 IWDVKSQ 389 (504)
Q Consensus 383 iwd~~~~ 389 (504)
.||..++
T Consensus 466 ~Yd~~~~ 472 (480)
T PHA02790 466 VYNNRTY 472 (480)
T ss_pred EEECCCC
Confidence 6666543
No 494
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.07 E-value=8.4 Score=37.27 Aligned_cols=151 Identities=16% Similarity=0.258 Sum_probs=86.5
Q ss_pred cceeEEEEeeCCCEEEEEeCCCc------EEEEeCCCCC----Ccc--eeEEeccCCc--------CeEEEEEccCCCEE
Q 010669 266 KKVTSVKFVTEGDLFLTGSADKT------VRVWQGSEDG----NYD--CKHTLKDHTA--------EVQAVTVHATNKYF 325 (504)
Q Consensus 266 ~~v~~l~~s~~~~~l~s~s~dg~------i~iwd~~~~~----~~~--~~~~~~~h~~--------~v~~l~~~p~~~~l 325 (504)
+.+..+.+.+++..+++.+.+|. +..+++.... ... ....+..-.+ ..-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888765556666666666 5545443310 000 0111111111 33477887778777
Q ss_pred EEEeCC------CeEEEEECCCCeEEEEeecC----------CCCCCCCCeEEEEECCCCCEEEEEeC-----CC--c--
Q 010669 326 VTASLD------NTWCFYDLSSGICLTQVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTS-----EA--L-- 380 (504)
Q Consensus 326 ~s~s~d------g~i~iwd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~pdg~~l~~g~~-----dg--~-- 380 (504)
++.-.+ ..|..++.. |.....+... .....+..+-.++++|||+.|+++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 777667 788888877 6554444211 11134567899999999996665533 22 1
Q ss_pred -----EEE--EEcCC-Cceee----eeeC-----CCCCeEEEEEcCCCcEEEEE
Q 010669 381 -----VKI--WDVKS-QANVA----KFDG-----HVGAVTAISFSENGYYLATA 417 (504)
Q Consensus 381 -----I~i--wd~~~-~~~~~----~~~~-----~~~~i~~l~~s~~g~~l~s~ 417 (504)
+++ ||..+ +.... .+.. ....|+.+.+-+++.+|+.=
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 444 45544 32222 2222 34678999999999877754
No 495
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.86 E-value=0.71 Score=41.71 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=50.0
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCceeeee-------e-------CCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCC
Q 010669 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKF-------D-------GHVGAVTAISFSENGYYLATAAHDGVKLWDLRK 429 (504)
Q Consensus 364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-------~-------~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~ 429 (504)
.+..++.++++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+.+..+.||..-
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 35557889999999999999999988754322 1 244578889999899888877665588888654
No 496
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.80 E-value=10 Score=36.85 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=57.0
Q ss_pred ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe----ccCCcCeEEEEEccC---CCEEE-EEeCC-------
Q 010669 267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFV-TASLD------- 331 (504)
Q Consensus 267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~l~-s~s~d------- 331 (504)
..+.|+|.|+|+++++ ...|.|++++... .....+..+ .........++++|+ ..+|. +.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999887665 5699999998322 211122222 233457899999994 23333 33321
Q ss_pred -CeEEEEECCCC--e-----EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669 332 -NTWCFYDLSSG--I-----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378 (504)
Q Consensus 332 -g~i~iwd~~~~--~-----~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d 378 (504)
..|.-|....+ . .+...... .......-..+.|.|||.++++.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPD-TSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES--CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCC-CCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23444554433 1 11111111 11223456679999999777665543
No 497
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.80 E-value=7.8 Score=35.66 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=114.6
Q ss_pred eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 010669 268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 347 (504)
Q Consensus 268 v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (504)
-..++-.+||..-+++...|.|--.|..++ +....-.+....-..|..-|||..-++-+.. .|.-.|-++.....
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~- 138 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR- 138 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-
Confidence 455667778887788877777777777775 2222222344455677778888765553333 45555655544322
Q ss_pred eecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEE
Q 010669 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLW 425 (504)
Q Consensus 348 ~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vw 425 (504)
+... ............|.+.|++.+++.. |.---.|... ..+..|.. .....+.|+..|||...++.-.++ |-..
T Consensus 139 f~lp-~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 139 FPLP-LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred eecc-cccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence 2211 1123456788999999999999863 2111112111 22333332 234567889999999888776666 7777
Q ss_pred EcCCCcceeeeecCCC-CCCeeEEEECCCCCEEEEEeCcEEEEEeeccCcccee
Q 010669 426 DLRKLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNC 478 (504)
Q Consensus 426 d~~~~~~~~~~~~~~~-~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~ 478 (504)
|...+.. ..+..... ......+--+|.|..-++-.....++.++...+.|..
T Consensus 216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence 8776632 23332221 2334455556777776664444555555444444543
No 498
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=6.8 Score=34.48 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=94.7
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCC
Q 010669 276 EGDLFLTGSA--DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAG 352 (504)
Q Consensus 276 ~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~ 352 (504)
+|.++.+.+. ...|++||+.+++ .+....-....+..=-...-++++..- =.+|.-..+|.++.+++..+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq---~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQ---EIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCce---EEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-
Confidence 4556666553 3469999998753 222211111111110011113333322 34777788898888777666422
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eeCC-CCCeEEEEEcCCCcEEEEEeCCc-EEEEE
Q 010669 353 TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK----FDGH-VGAVTAISFSENGYYLATAAHDG-VKLWD 426 (504)
Q Consensus 353 ~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~----~~~~-~~~i~~l~~s~~g~~l~s~~~d~-v~vwd 426 (504)
+.-..++ .|+.-|+.++...+++.-|.++.....+ +.+. -..++.+.|- +|...+-.-... |...|
T Consensus 131 -----GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 131 -----GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred -----Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 2223333 3455566666666777777665433222 2221 1233344443 565555444443 66666
Q ss_pred cCCCcceeeeecCC----------CCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669 427 LRKLKNFRSFESSD----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 469 (504)
Q Consensus 427 ~~~~~~~~~~~~~~----------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~ 469 (504)
..+++.+..+.... +....+.+++.|++..++..+.. -.+|.+
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence 66666655554321 23467889999998666655544 445544
No 499
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=92.59 E-value=0.27 Score=43.13 Aligned_cols=53 Identities=26% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhh
Q 010669 82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER 134 (504)
Q Consensus 82 a~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~ 134 (504)
+|+.-+++|++-...+++|+...-.+-..-.....+..+||||||+++..+-.
T Consensus 9 ~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 9 KLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777666666666554444444567778899999999999988773
No 500
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.57 E-value=0.47 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCC
Q 010669 358 EGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQ 389 (504)
Q Consensus 358 ~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~ 389 (504)
+.+.++.|+|+.. +|+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Done!