BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010670
         (504 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
 pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
          Length = 477

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 245 INRALEKDFGMVAGM------SWWIW--IISVLFIFFNAQGFYNYLWLPFIPLVMLLVVG 296
           I +A   D+G V G        + IW  I  VL   F   G  N  +  FIP+  L    
Sbjct: 22  IQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEA 81

Query: 297 TKLEGIITQMCLDSHGKSQVVIGPLLVRPSDH----YFWFNW 334
             +EG   ++ + +H   + +  PL VRP+      Y W  W
Sbjct: 82  EHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKW 123


>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
 pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx4032
          Length = 289

 Score = 29.3 bits (64), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 372 KTEDIIIKIVLGVVVHMLCGYVTLPLYALVTQ--MGSSMKNAVFPESVAHGLKRWRGRAR 429
           K E  +++    V + +  GY T P  A+VTQ   GSS+ + +        +K+    AR
Sbjct: 68  KNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIAR 127

Query: 430 KNLRTNDYYSAR 441
           +  R  DY  A+
Sbjct: 128 QTARGMDYLHAK 139


>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
 pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
          Length = 280

 Score = 28.9 bits (63), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 372 KTEDIIIKIVLGVVVHMLCGYVTLPLYALVTQ--MGSSMKNAVFPESVAHGLKRWRGRAR 429
           K E  +++    V + +  GY T P  A+VTQ   GSS+ + +        +K+    AR
Sbjct: 56  KNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIAR 115

Query: 430 KNLRTNDYYSAR 441
           +  R  DY  A+
Sbjct: 116 QTARGMDYLHAK 127


>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
 pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
           Plx3203
          Length = 292

 Score = 28.9 bits (63), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 372 KTEDIIIKIVLGVVVHMLCGYVTLPLYALVTQ--MGSSMKNAVFPESVAHGLKRWRGRAR 429
           K E  +++    V + +  GY T P  A+VTQ   GSS+ + +        +K+    AR
Sbjct: 68  KNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIAR 127

Query: 430 KNLRTNDYYSAR 441
           +  R  DY  A+
Sbjct: 128 QTARGMDYLHAK 139


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,558,845
Number of Sequences: 62578
Number of extensions: 493761
Number of successful extensions: 1128
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 4
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)