Query 010670
Match_columns 504
No_of_seqs 169 out of 248
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:13:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 9E-187 2E-191 1457.2 37.0 459 8-477 1-475 (478)
2 COG1033 Predicted exporters of 57.7 21 0.00046 41.6 6.2 55 22-76 252-317 (727)
3 PRK11677 hypothetical protein; 50.9 26 0.00056 32.8 4.6 60 17-80 2-70 (134)
4 PF07219 HemY_N: HemY protein 50.3 28 0.0006 30.5 4.5 46 14-59 13-65 (108)
5 PF06305 DUF1049: Protein of u 49.6 52 0.0011 26.0 5.6 47 18-64 18-64 (68)
6 TIGR02976 phageshock_pspB phag 38.9 97 0.0021 26.4 5.8 28 17-44 3-30 (75)
7 TIGR03144 cytochr_II_ccsB cyto 35.8 1.5E+02 0.0033 29.5 7.8 29 52-80 142-170 (243)
8 PF12129 Phtf-FEM1B_bdg: Male 33.1 68 0.0015 31.0 4.5 20 286-305 130-149 (159)
9 PF01578 Cytochrom_C_asm: Cyto 33.0 1.4E+02 0.003 28.6 6.8 30 52-81 116-145 (214)
10 PLN02715 lipid phosphate phosp 30.3 6.1E+02 0.013 27.1 11.4 20 13-32 89-108 (327)
11 TIGR00540 hemY_coli hemY prote 28.8 77 0.0017 33.5 4.6 39 13-51 37-82 (409)
12 PRK10747 putative protoheme IX 26.0 86 0.0019 33.1 4.3 38 13-50 37-81 (398)
13 PF11044 TMEMspv1-c74-12: Plec 25.6 1.3E+02 0.0028 23.7 4.0 28 16-43 2-34 (49)
14 PF14015 DUF4231: Protein of u 24.2 2.2E+02 0.0048 24.3 5.8 41 19-65 53-93 (112)
15 COG2717 Predicted membrane pro 23.7 5.2E+02 0.011 26.1 9.0 76 51-155 103-190 (209)
16 TIGR03777 RPE4 Rickettsial pal 23.4 36 0.00079 24.8 0.6 9 320-328 24-32 (32)
17 PF15468 DUF4636: Domain of un 23.1 36 0.00078 34.5 0.8 38 242-284 25-62 (243)
18 PF12801 Fer4_5: 4Fe-4S bindin 22.9 1.6E+02 0.0035 21.8 4.2 25 16-40 1-25 (48)
19 TIGR00921 2A067 The (Largely A 20.2 3.2E+02 0.007 30.9 7.6 55 20-74 621-685 (719)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=8.8e-187 Score=1457.20 Aligned_cols=459 Identities=51% Similarity=0.958 Sum_probs=436.7
Q ss_pred cCCcccccCchHhHHHHHHHHHHHHHHHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 010670 8 EERSIEVTPTWAVATVCLMLISVSVLIEHLLHLLAKYFNKKKKSSLIQTLHKIKSDLMMLGFMSLILTVSEKRISNICIP 87 (504)
Q Consensus 8 ~~rsLe~TPTWaVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 87 (504)
|+|+||+|||||||+||++||++|+++||++|++||||+|++||+|+|||||||+|||+|||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccccCCCCCCCC---------------hhhhhhhhccCccceeeccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010670 88 KSMAETFLPCGTMDSDDY---------------SEEELKCLEQGKVSLLSRKGVNQLQYLIFVLAFFHSLSCVLTFSLGM 152 (504)
Q Consensus 88 ~~~~~~mlPC~~~~~~~~---------------~~~~~~C~~~GkvpliS~e~lhQLHIFIFVLAv~HV~ys~lTm~Lg~ 152 (504)
++++++|+||+..++.++ +++.++|.+||||||+|.|||||||||||||||+||+|||+||+||+
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~~~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~ 160 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEGSSHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGR 160 (478)
T ss_pred hhHHhcccCCCCcccccccccchhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996543321 24567998889999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhhhhhccCCCcceeeeecccccccccccccccccchhhhhHhHhhhccCCCHhHHHHHHHHHHhhh
Q 010670 153 AKMRSWESWEAETRTLEYQFTNDPRRFRFTHQTSFGKRHLRFWSEHSRLLRWPACFLRQFYASVSRTDYLTLRRGFITAH 232 (504)
Q Consensus 153 ~Kir~Wk~WE~e~~~~~~~~~~dp~r~~~~~qtsF~~~h~~~w~~~~~~l~wi~cFfrQF~~SV~k~DYltLR~gFI~~H 232 (504)
+|||+||+||+|+++++||..+||+|+|++||++|+|+|.++|++++ ++.|++|||||||+||+|+||+|||+|||++|
T Consensus 161 ~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~~-~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H 239 (478)
T PF03094_consen 161 AKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKSP-VLSWIVCFFRQFYGSVTKSDYLTLRHGFITAH 239 (478)
T ss_pred HHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccCh-hHHhHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHhcccccccccchHHHHHHHHHhhcccCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010670 233 FAKESHFNFQRYINRALEKDFGMVAGMSWWIWIISVLFIFFNAQGFYNYLWLPFIPLVMLLVVGTKLEGIITQMCLDSHG 312 (504)
Q Consensus 233 ~~~~~~FdF~kYi~RsLE~DFk~VVGIS~~lW~~vv~flLlnv~gw~~yfWl~fiPliliLlVGtKLq~IIt~lalei~~ 312 (504)
++|+++|||||||+||||||||+||||||++|++||+|+|+|++|||+|||++|||++++|+||||||+||++||+|++|
T Consensus 240 ~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~ 319 (478)
T PF03094_consen 240 LLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHIITKMALEIAE 319 (478)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCccccccchhHHHHHHHHHHHhhhhHHHHHHHHHhhcccccccccCccceeehheehhhhhhhccc
Q 010670 313 KSQVVIGPLLVRPSDHYFWFNWPKLLLHVIHLVLLQNSFQLAFFAWTWYKFGLRSCFHEKTEDIIIKIVLGVVVHMLCGY 392 (504)
Q Consensus 313 ~~~~v~G~p~v~P~D~lFWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~SCf~~~~~~ii~Rl~~Gv~vq~lCSY 392 (504)
++++++|+|+|+|+|++|||+||+|||+||||+|||||||||||+|+||+||++||||++.+++++|+++|+++|++|||
T Consensus 320 ~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy 399 (478)
T PF03094_consen 320 RHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSY 399 (478)
T ss_pred ccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccceeeehhhhhhhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhcccccccccchhHHHHHHHHHHHHhhccccCCCC-CCCCCCCCCcccccccccCCCCCCCCCCCCCCC
Q 010670 393 VTLPLYALVTQMGSSMKNAVFPESVAHGLKRWRGRARKNLRTNDYY-SARPSSVDDASVSLDASLSLDASPSFSLHPSYS 471 (504)
Q Consensus 393 ~TLPLYALVTQMGs~~K~~if~e~v~~~l~~W~~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~s~~~~ 471 (504)
+|||||||||||||+||++||+|+|+++|++||++||||+|+++.. ++..++ .. ++++||++|+||+|+
T Consensus 400 ~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~S~~~l 469 (478)
T PF03094_consen 400 VTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSAHSGSTTP--------GS--SRSTTPSRGSSPVHL 469 (478)
T ss_pred hhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC--------CC--CCCCCCCCCCCchhh
Confidence 9999999999999999999999999999999999999999887522 111111 11 577899999999999
Q ss_pred CCcCCC
Q 010670 472 VDREGD 477 (504)
Q Consensus 472 ~~~~~~ 477 (504)
+++...
T Consensus 470 l~~~~~ 475 (478)
T PF03094_consen 470 LHRFKT 475 (478)
T ss_pred hccCCC
Confidence 865543
No 2
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=57.67 E-value=21 Score=41.64 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCc-----chHHHHHHHHHHHHH------HHHHHHHHHHH
Q 010670 22 TVCLMLISVSVLIEHLLHLLAKYFNKKKK-----SSLIQTLHKIKSDLM------MLGFMSLILTV 76 (504)
Q Consensus 22 ~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~k-----kaL~eALeKiK~ELM------LLGFISLLLtv 76 (504)
....+.++|.+.+++++|..-++.+++++ +|+.||+.|...=++ .+||+||+.+-
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 44566778899999999999999987776 377778887776655 48999997643
No 3
>PRK11677 hypothetical protein; Provisional
Probab=50.91 E-value=26 Score=32.80 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=36.8
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHhHhhhcCcchHHHHHHHHHHHH---------HHHHHHHHHHHHhhhc
Q 010670 17 TWAVATVCLMLISVSVLIEHLLHLLAKYFNKKKKSSLIQTLHKIKSDL---------MMLGFMSLILTVSEKR 80 (504)
Q Consensus 17 TWaVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~kkaL~eALeKiK~EL---------MLLGFISLLLtv~q~~ 80 (504)
+|..|++++|+.+ ++=.++.+++.. +.++++.|.+-||+.|.|| =.--.-.||=+..++|
T Consensus 2 ~W~~a~i~livG~---iiG~~~~R~~~~-~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 2 TWEYALIGLVVGI---IIGAVAMRFGNR-KLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888887665543 333344444432 1135678999999999998 2344555555555555
No 4
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=50.32 E-value=28 Score=30.53 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=35.3
Q ss_pred ccCchHhHHHHHHHHHHHHHHHHHHHH-------HHhHhhhcCcchHHHHHHH
Q 010670 14 VTPTWAVATVCLMLISVSVLIEHLLHL-------LAKYFNKKKKSSLIQTLHK 59 (504)
Q Consensus 14 ~TPTWaVA~Vc~v~V~iSi~~Er~lH~-------Lgk~lkkk~kkaL~eALeK 59 (504)
||.-|...+++.+++++..++.+.+-. +.+|+++++++.-+++|++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888765 5678888888777777764
No 5
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.60 E-value=52 Score=26.00 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=30.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhHhhhcCcchHHHHHHHHHHHH
Q 010670 18 WAVATVCLMLISVSVLIEHLLHLLAKYFNKKKKSSLIQTLHKIKSDL 64 (504)
Q Consensus 18 WaVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~kkaL~eALeKiK~EL 64 (504)
+-++++.++..++.+++=-.+.....+=.|++.+.+-+.+++.+.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556665556666665555556678888899988886
No 6
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=38.91 E-value=97 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 010670 17 TWAVATVCLMLISVSVLIEHLLHLLAKY 44 (504)
Q Consensus 17 TWaVA~Vc~v~V~iSi~~Er~lH~Lgk~ 44 (504)
.|.+++-..+|+++...++-.+||..|+
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3677778888888888999999999885
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=35.84 E-value=1.5e+02 Score=29.47 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010670 52 SLIQTLHKIKSDLMMLGFMSLILTVSEKR 80 (504)
Q Consensus 52 aL~eALeKiK~ELMLLGFISLLLtv~q~~ 80 (504)
+=.+.+||+--.....||+-|.+++..+.
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988775
No 8
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=33.08 E-value=68 Score=31.03 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010670 286 FIPLVMLLVVGTKLEGIITQ 305 (504)
Q Consensus 286 fiPliliLlVGtKLq~IIt~ 305 (504)
++|+.++|++|+==-+|+.+
T Consensus 130 ~~Pi~LmLlLg~VH~QIVST 149 (159)
T PF12129_consen 130 FGPICLMLLLGTVHCQIVST 149 (159)
T ss_pred HHHHHHHHHHHHhhheeeec
Confidence 89999999999955555444
No 9
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=32.98 E-value=1.4e+02 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010670 52 SLIQTLHKIKSDLMMLGFMSLILTVSEKRI 81 (504)
Q Consensus 52 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 81 (504)
+-.+.||++-.-++..||+.|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 345788999999999999999988877753
No 10
>PLN02715 lipid phosphate phosphatase
Probab=30.32 E-value=6.1e+02 Score=27.10 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=14.2
Q ss_pred cccCchHhHHHHHHHHHHHH
Q 010670 13 EVTPTWAVATVCLMLISVSV 32 (504)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSi 32 (504)
|.-|+|.+.+++.++-++.+
T Consensus 89 ~tVp~~~l~vi~~liPii~i 108 (327)
T PLN02715 89 NTVPIWSVPVYAVLLPIILF 108 (327)
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 56799999887776555433
No 11
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=28.78 E-value=77 Score=33.46 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=26.7
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHH-------HHHhHhhhcCcc
Q 010670 13 EVTPTWAVATVCLMLISVSVLIEHLLH-------LLAKYFNKKKKS 51 (504)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSi~~Er~lH-------~Lgk~lkkk~kk 51 (504)
-+|+-|...++..+++++.+++++++. .+.+|+.++|++
T Consensus 37 ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~ 82 (409)
T TIGR00540 37 IEMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRR 82 (409)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 356667777776666677778889885 445687776553
No 12
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=26.02 E-value=86 Score=33.11 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=28.6
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHHHH-------HhHhhhcCc
Q 010670 13 EVTPTWAVATVCLMLISVSVLIEHLLHLL-------AKYFNKKKK 50 (504)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSi~~Er~lH~L-------gk~lkkk~k 50 (504)
-||+-|..++++.+++++.+++++++..+ ..|+.++|+
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 46777888888888888888889988544 567777555
No 13
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.64 E-value=1.3e+02 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=14.3
Q ss_pred CchHh-----HHHHHHHHHHHHHHHHHHHHHHh
Q 010670 16 PTWAV-----ATVCLMLISVSVLIEHLLHLLAK 43 (504)
Q Consensus 16 PTWaV-----A~Vc~v~V~iSi~~Er~lH~Lgk 43 (504)
|||.- ..++.+|.-+.+.+=+-+..+..
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78853 23333444455555555555554
No 14
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=24.18 E-value=2.2e+02 Score=24.28 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhHhhhcCcchHHHHHHHHHHHHH
Q 010670 19 AVATVCLMLISVSVLIEHLLHLLAKYFNKKKKSSLIQTLHKIKSDLM 65 (504)
Q Consensus 19 aVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~kkaL~eALeKiK~ELM 65 (504)
.+++++.+++++.-.+...-..=.+|.+ ...+.|++|.|.+
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~------~r~tae~lk~e~~ 93 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIR------YRATAESLKREKW 93 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHH------HHHHHHHHHHHHH
Confidence 3444677777777788888887788876 3455666677655
No 15
>COG2717 Predicted membrane protein [Function unknown]
Probab=23.71 E-value=5.2e+02 Score=26.12 Aligned_cols=76 Identities=17% Similarity=0.338 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcCcccccCCCCCCCChhhhhhhhccCccceeeccccchhH
Q 010670 51 SSLIQTLHKIKSDLMMLGFMSLILTVSEKRISNICIPKSMAETFLPCGTMDSDDYSEEELKCLEQGKVSLLSRKGVNQLQ 130 (504)
Q Consensus 51 kaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp~~~~~~mlPC~~~~~~~~~~~~~~C~~~GkvpliS~e~lhQLH 130 (504)
+.-.-..|-.++=.+.+|+|++++..---.-|.--.-.+.+..| .-||+|=
T Consensus 103 ~~~~~~~d~~~rpyitiG~iaflll~pLalTS~k~~~rrlG~rW-----------------------------~~LHrLv 153 (209)
T COG2717 103 DLALLGLDLLKRPYITIGMIAFLLLIPLALTSFKWVRRRLGKRW-----------------------------KKLHRLV 153 (209)
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------------------------HHHHHHH
Confidence 34455677788888999999988643211111100001111111 1278888
Q ss_pred HHHHHHHHHHH------------HHHHHHHHHhhhhh
Q 010670 131 YLIFVLAFFHS------------LSCVLTFSLGMAKM 155 (504)
Q Consensus 131 IFIFVLAv~HV------------~ys~lTm~Lg~~Ki 155 (504)
+.+-.|+..|. +|.++++.+...|.
T Consensus 154 Yl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~ 190 (209)
T COG2717 154 YLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRV 190 (209)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH
Confidence 88888999994 57777777777766
No 16
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=23.40 E-value=36 Score=24.81 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=7.2
Q ss_pred cccccCCCc
Q 010670 320 PLLVRPSDH 328 (504)
Q Consensus 320 ~p~v~P~D~ 328 (504)
+|+|||+||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 578899886
No 17
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=23.06 E-value=36 Score=34.54 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=25.9
Q ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhcccCccccccch
Q 010670 242 QRYINRALEKDFGMVAGMSWWIWIISVLFIFFNAQGFYNYLWL 284 (504)
Q Consensus 242 ~kYi~RsLE~DFk~VVGIS~~lW~~vv~flLlnv~gw~~yfWl 284 (504)
++|=.| +||+-.++| +..||.|++|++|.=. .+.++|+
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wm 62 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWM 62 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445444 899888877 7899999888765522 3455664
No 18
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=22.86 E-value=1.6e+02 Score=21.80 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=17.4
Q ss_pred CchHhHHHHHHHHHHHHHHHHHHHH
Q 010670 16 PTWAVATVCLMLISVSVLIEHLLHL 40 (504)
Q Consensus 16 PTWaVA~Vc~v~V~iSi~~Er~lH~ 40 (504)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455666666888889888885433
No 19
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=20.21 E-value=3.2e+02 Score=30.92 Aligned_cols=55 Identities=24% Similarity=0.496 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhcCc----chHHHHHHHHHHHH------HHHHHHHHHH
Q 010670 20 VATVCLMLISVSVLIEHLLHLLAKYFNKKKK----SSLIQTLHKIKSDL------MMLGFMSLIL 74 (504)
Q Consensus 20 VA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~k----kaL~eALeKiK~EL------MLLGFISLLL 74 (504)
++.+....+++.+.++..+|.+.+|.+++++ +++.+|+++.=.=+ +.+||.+|++
T Consensus 621 ~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~ 685 (719)
T TIGR00921 621 LAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLL 685 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3445555678888999999999999876544 55666666655533 3446666544
Done!