Query 010670
Match_columns 504
No_of_seqs 169 out of 248
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 44.9 37 0.0013 26.3 5.1 44 13-58 5-48 (54)
2 2knc_A Integrin alpha-IIB; tra 43.4 35 0.0012 26.4 4.7 37 13-50 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 33.2 48 0.0016 24.3 3.9 36 13-49 6-41 (42)
4 2knc_B Integrin beta-3; transm 29.5 1.1E+02 0.0037 24.9 5.9 22 155-176 41-62 (79)
5 2uwj_E Type III export protein 18.2 37 0.0013 27.6 0.9 33 34-66 8-40 (70)
6 2kv9_B Integrin beta-3; platel 14.9 77 0.0026 26.0 2.1 22 155-176 37-58 (75)
7 1zke_A Hypothetical protein HP 14.4 30 0.001 28.8 -0.5 18 51-68 65-82 (83)
8 1rh4_A Right-handed coiled coi 11.1 1E+02 0.0036 21.4 1.5 15 50-64 19-33 (35)
9 1s4x_A Integrin beta-3; cell a 10.3 1.3E+02 0.0043 24.1 1.9 21 156-176 30-50 (67)
10 1zw0_A Type III secretion prot 9.9 1.6E+02 0.0054 23.7 2.3 31 34-66 4-34 (66)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=44.91 E-value=37 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=21.9
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHHHHHhHhhhcCcchHHHHHH
Q 010670 13 EVTPTWAVATVCLMLISVSVLIEHLLHLLAKYFNKKKKSSLIQTLH 58 (504)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~kkaL~eALe 58 (504)
+..|.|.+.+-...-+++-.++=-++-++| +|||+++ +..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~~-~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPLK-KKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCS-CCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCc-chhhHHh
Confidence 357999644332222223333445566777 6777665 3334333
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.37 E-value=35 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=22.0
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHHHHHhHhhhcCc
Q 010670 13 EVTPTWAVATVCLMLISVSVLIEHLLHLLAKYFNKKKK 50 (504)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~k 50 (504)
+..|.|.+.+-...-+++-.++=.++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 357999754443333333444455677777 6777665
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.23 E-value=48 Score=24.32 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=19.5
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 010670 13 EVTPTWAVATVCLMLISVSVLIEHLLHLLAKYFNKKK 49 (504)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSi~~Er~lH~Lgk~lkkk~ 49 (504)
+..|.|.+.+-...-+++-.++=.++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 367999654433333333334445667776 566554
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.50 E-value=1.1e+02 Score=24.93 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhhhhhhccCCC
Q 010670 155 MRSWESWEAETRTLEYQFTNDP 176 (504)
Q Consensus 155 ir~Wk~WE~e~~~~~~~~~~dp 176 (504)
-|.++++|+|.+....+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 4899999999887665555555
No 5
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=18.24 E-value=37 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHH
Q 010670 34 IEHLLHLLAKYFNKKKKSSLIQTLHKIKSDLMM 66 (504)
Q Consensus 34 ~Er~lH~Lgk~lkkk~kkaL~eALeKiK~ELML 66 (504)
+|..|+-.+.-..++=+..|..||.++|++|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555544333444455699999999999986
No 6
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=14.94 E-value=77 Score=25.97 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHhhhhhhccCCC
Q 010670 155 MRSWESWEAETRTLEYQFTNDP 176 (504)
Q Consensus 155 ir~Wk~WE~e~~~~~~~~~~dp 176 (504)
-|.|++.|+|.+....+..++|
T Consensus 37 rREyaKFEkEr~~akw~~~eNP 58 (75)
T 2kv9_B 37 RKEFAKFEEERARAKWDTANNP 58 (75)
T ss_dssp CHHHHHHHHHHHHGGGSSTTSH
T ss_pred HHHHHHHHHHHHHhccccccCC
Confidence 3899999999887655544444
No 7
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=14.43 E-value=30 Score=28.75 Aligned_cols=18 Identities=44% Similarity=0.785 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 010670 51 SSLIQTLHKIKSDLMMLG 68 (504)
Q Consensus 51 kaL~eALeKiK~ELMLLG 68 (504)
|+..+||.|+|+|+...|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 568899999999986654
No 8
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=11.08 E-value=1e+02 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=11.8
Q ss_pred cchHHHHHHHHHHHH
Q 010670 50 KSSLIQTLHKIKSDL 64 (504)
Q Consensus 50 kkaL~eALeKiK~EL 64 (504)
|-..+.||.|||.|+
T Consensus 19 kaeilaalkkikqei 33 (35)
T 1rh4_A 19 KAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456788889998885
No 9
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=10.27 E-value=1.3e+02 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=15.5
Q ss_pred hhHHHHHHHHhhhhhhccCCC
Q 010670 156 RSWESWEAETRTLEYQFTNDP 176 (504)
Q Consensus 156 r~Wk~WE~e~~~~~~~~~~dp 176 (504)
|.+++.|+|.+....+..++|
T Consensus 30 rEyakFE~Er~~akw~~~~NP 50 (67)
T 1s4x_A 30 KEFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp HHHHHHHHHHTTTTTCSSSST
T ss_pred HHHHHHHHHHHHccccccCCC
Confidence 789999999887655544555
No 10
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=9.87 E-value=1.6e+02 Score=23.67 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHH
Q 010670 34 IEHLLHLLAKYFNKKKKSSLIQTLHKIKSDLMM 66 (504)
Q Consensus 34 ~Er~lH~Lgk~lkkk~kkaL~eALeKiK~ELML 66 (504)
+|..|+--. ..+.=+..|..||.++|++|++
T Consensus 4 LE~~L~~~d--~~~~i~~~l~qAl~~vKRqL~~ 34 (66)
T 1zw0_A 4 LEEQLHNVE--TVRSITMQLEMALTKLKKDMMR 34 (66)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 455555532 3444445699999999999985
Done!