Query 010670
Match_columns 504
No_of_seqs 169 out of 248
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 11:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010670.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010670hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 21.9 20 0.0015 25.3 1.9 18 336-353 29-46 (51)
2 d1q1ha_ a.4.5.41 (A:) Transcri 10.8 28 0.002 27.4 0.2 9 276-284 73-81 (88)
3 d1zkea1 a.30.6.1 (A:1-79) Hypo 10.4 41 0.003 25.7 1.1 15 51-65 63-77 (79)
4 d1iwga8 f.35.1.1 (A:513-566,A: 9.7 2E+02 0.015 24.4 5.8 56 20-75 111-178 (222)
5 d1ep3a_ c.1.4.1 (A:) Dihydroor 8.5 1.3E+02 0.0094 26.3 4.0 31 32-62 278-308 (311)
6 d3b60a2 f.37.1.1 (A:10-328) Mu 7.9 2.1E+02 0.015 23.4 4.9 23 18-40 156-178 (319)
7 d1j1va_ a.4.12.2 (A:) Chromoso 7.6 1.3E+02 0.0097 22.6 3.2 31 34-64 45-75 (94)
8 d1xrda1 f.3.1.1 (A:1-52) Light 6.4 1.1E+02 0.0078 21.8 1.8 14 126-139 14-27 (52)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 6.3 2.7E+02 0.02 20.6 4.5 34 24-57 7-40 (158)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 6.3 1.4E+02 0.01 19.6 2.2 14 131-144 22-35 (37)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.93 E-value=20 Score=25.35 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhhhhHH
Q 010670 336 KLLLHVIHLVLLQNSFQL 353 (504)
Q Consensus 336 ~llL~LIHfiLFQNAFel 353 (504)
.++|-|.|=.=|||||.+
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 689999999999999986
No 2
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.78 E-value=28 Score=27.36 Aligned_cols=9 Identities=33% Similarity=1.206 Sum_probs=7.4
Q ss_pred Cccccccch
Q 010670 276 QGFYNYLWL 284 (504)
Q Consensus 276 ~gw~~yfWl 284 (504)
.||++|+|-
T Consensus 73 ~gw~~Y~W~ 81 (88)
T d1q1ha_ 73 SGWFIYYWK 81 (88)
T ss_dssp CCCCEEEEE
T ss_pred CCcEEEEEE
Confidence 389999994
No 3
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=10.43 E-value=41 Score=25.72 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHH
Q 010670 51 SSLIQTLHKIKSDLM 65 (504)
Q Consensus 51 kaL~eALeKiK~ELM 65 (504)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999974
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.66 E-value=2e+02 Score=24.43 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhh--hcCcchHHHHHHHHHHHH----------HHHHHHHHHHH
Q 010670 20 VATVCLMLISVSVLIEHLLHLLAKYFN--KKKKSSLIQTLHKIKSDL----------MMLGFMSLILT 75 (504)
Q Consensus 20 VA~Vc~v~V~iSi~~Er~lH~Lgk~lk--kk~kkaL~eALeKiK~EL----------MLLGFISLLLt 75 (504)
+......++++.+.+..++|.+..+.+ +++.+...||..+.-+|- +++||++|.+.
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 345566777889999999999998865 333355666665555554 36777777653
No 5
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=8.47 E-value=1.3e+02 Score=26.29 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhHhhhcCcchHHHHHHHHHH
Q 010670 32 VLIEHLLHLLAKYFNKKKKSSLIQTLHKIKS 62 (504)
Q Consensus 32 i~~Er~lH~Lgk~lkkk~kkaL~eALeKiK~ 62 (504)
.+++++...|.+|+++++-+.+-|...|+|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 3578999999999999998999999999986
No 6
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.88 E-value=2.1e+02 Score=23.36 Aligned_cols=23 Identities=9% Similarity=0.395 Sum_probs=14.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 010670 18 WAVATVCLMLISVSVLIEHLLHL 40 (504)
Q Consensus 18 WaVA~Vc~v~V~iSi~~Er~lH~ 40 (504)
|.+++++.+.+.+.+++-....+
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~ 178 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSK 178 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhh
Confidence 66677777777766665544433
No 7
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=7.63 E-value=1.3e+02 Score=22.62 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHhhhcCcchHHHHHHHHHHHH
Q 010670 34 IEHLLHLLAKYFNKKKKSSLIQTLHKIKSDL 64 (504)
Q Consensus 34 ~Er~lH~Lgk~lkkk~kkaL~eALeKiK~EL 64 (504)
....+-.+|+.|..|.-.+..+|+.|+++++
T Consensus 45 ~~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3446778999997666689999999998764
No 8
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=6.42 E-value=1.1e+02 Score=21.79 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHHH
Q 010670 126 VNQLQYLIFVLAFF 139 (504)
Q Consensus 126 lhQLHIFIFVLAv~ 139 (504)
+--++.|.|+||+.
T Consensus 14 lva~~~fL~~LAl~ 27 (52)
T d1xrda1 14 LVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34578999999874
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.32 E-value=2.7e+02 Score=20.58 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcCcchHHHHH
Q 010670 24 CLMLISVSVLIEHLLHLLAKYFNKKKKSSLIQTL 57 (504)
Q Consensus 24 c~v~V~iSi~~Er~lH~Lgk~lkkk~kkaL~eAL 57 (504)
..|+++|.|+.==++=.+..+.++.+.+.....+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l 40 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLA 40 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666665544433333
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.32 E-value=1.4e+02 Score=19.63 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 010670 131 YLIFVLAFFHSLSC 144 (504)
Q Consensus 131 IFIFVLAv~HV~ys 144 (504)
.+||||||..-.|-
T Consensus 22 Llifvl~vLFssYf 35 (37)
T d2axtl1 22 LLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 48999998876663
Done!