Query 010672
Match_columns 504
No_of_seqs 385 out of 3194
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 2.5E-87 5.4E-92 659.9 39.9 432 54-485 16-482 (519)
2 PTZ00110 helicase; Provisional 100.0 1.4E-83 3.1E-88 667.5 55.8 440 44-483 73-516 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 2.7E-81 5.8E-86 581.3 32.2 428 53-481 166-602 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 4.8E-79 1E-83 579.9 37.4 428 51-479 175-603 (731)
5 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-74 2.8E-79 552.4 33.5 411 69-481 215-655 (673)
6 KOG0341 DEAD-box protein abstr 100.0 1.1E-75 2.4E-80 540.4 23.6 417 62-481 133-559 (610)
7 PLN00206 DEAD-box ATP-dependen 100.0 5.2E-72 1.1E-76 579.6 48.1 426 52-479 73-503 (518)
8 KOG0335 ATP-dependent RNA heli 100.0 1.7E-72 3.8E-77 545.1 35.3 407 77-484 50-477 (482)
9 KOG0330 ATP-dependent RNA heli 100.0 2.1E-72 4.5E-77 520.0 31.5 367 96-469 58-425 (476)
10 KOG0334 RNA helicase [RNA proc 100.0 6.5E-71 1.4E-75 569.2 32.5 428 51-479 316-748 (997)
11 COG0513 SrmB Superfamily II DN 100.0 4.1E-68 8.8E-73 546.6 41.7 373 99-475 29-408 (513)
12 PRK10590 ATP-dependent RNA hel 100.0 3.3E-66 7.1E-71 530.2 44.7 365 100-466 2-367 (456)
13 KOG0328 Predicted ATP-dependen 100.0 2.1E-67 4.5E-72 466.9 29.8 377 94-477 22-399 (400)
14 KOG0338 ATP-dependent RNA heli 100.0 5.3E-67 1.1E-71 498.4 27.4 362 98-463 180-545 (691)
15 PRK04837 ATP-dependent RNA hel 100.0 6.4E-64 1.4E-68 510.1 43.7 367 98-466 7-377 (423)
16 PRK04537 ATP-dependent RNA hel 100.0 1.1E-63 2.4E-68 520.3 44.9 366 99-466 9-379 (572)
17 KOG0342 ATP-dependent RNA heli 100.0 1.4E-64 2.9E-69 481.7 30.8 364 97-461 80-447 (543)
18 KOG0340 ATP-dependent RNA heli 100.0 9E-64 1.9E-68 457.4 28.8 366 98-468 6-378 (442)
19 PRK11776 ATP-dependent RNA hel 100.0 1.9E-62 4.1E-67 504.7 42.2 359 99-465 4-363 (460)
20 KOG0343 RNA Helicase [RNA proc 100.0 4.5E-63 9.7E-68 475.6 32.8 357 96-455 66-426 (758)
21 PRK11634 ATP-dependent RNA hel 100.0 3.1E-62 6.7E-67 511.9 41.9 357 98-461 5-362 (629)
22 KOG0345 ATP-dependent RNA heli 100.0 4E-62 8.6E-67 461.7 34.6 356 99-455 4-368 (567)
23 KOG0326 ATP-dependent RNA heli 100.0 3.9E-64 8.4E-69 453.3 18.9 369 99-475 85-453 (459)
24 PRK11192 ATP-dependent RNA hel 100.0 6.7E-61 1.4E-65 490.3 43.6 364 100-466 2-367 (434)
25 PRK01297 ATP-dependent RNA hel 100.0 1.2E-59 2.6E-64 485.0 44.2 378 97-476 85-469 (475)
26 KOG0348 ATP-dependent RNA heli 100.0 3.3E-60 7.1E-65 454.4 30.9 366 97-462 134-565 (708)
27 KOG0346 RNA helicase [RNA proc 100.0 8.1E-60 1.7E-64 442.2 28.2 368 99-466 19-425 (569)
28 PTZ00424 helicase 45; Provisio 100.0 4.5E-58 9.7E-63 466.1 40.9 369 97-472 26-395 (401)
29 KOG0344 ATP-dependent RNA heli 100.0 1E-56 2.2E-61 437.7 28.2 397 82-479 115-523 (593)
30 KOG0332 ATP-dependent RNA heli 100.0 4.7E-56 1E-60 409.0 30.2 371 96-477 87-471 (477)
31 KOG0347 RNA helicase [RNA proc 100.0 2.4E-57 5.2E-62 436.0 18.3 371 94-467 176-586 (731)
32 KOG0327 Translation initiation 100.0 4E-55 8.8E-60 406.5 24.7 370 98-476 25-395 (397)
33 KOG0337 ATP-dependent RNA heli 100.0 8.6E-56 1.9E-60 413.2 20.0 363 98-465 20-382 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 9.4E-53 2E-57 448.9 38.6 341 105-460 20-397 (742)
35 KOG4284 DEAD box protein [Tran 100.0 3.5E-52 7.5E-57 406.6 23.3 355 91-453 17-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 2.1E-50 4.5E-55 427.8 37.8 343 100-461 436-797 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 2.9E-50 6.3E-55 413.6 35.9 326 116-462 6-344 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 2.6E-51 5.7E-56 390.6 25.7 352 109-465 147-554 (620)
39 PRK02362 ski2-like helicase; P 100.0 1.9E-48 4E-53 420.4 36.6 336 100-451 2-397 (737)
40 PRK11057 ATP-dependent DNA hel 100.0 4.7E-48 1E-52 407.2 38.2 332 107-460 10-352 (607)
41 PRK13767 ATP-dependent helicas 100.0 4.3E-47 9.4E-52 413.3 38.4 343 106-450 18-397 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 4.7E-47 1E-51 401.0 35.7 322 117-460 9-340 (591)
43 PRK00254 ski2-like helicase; P 100.0 6.8E-47 1.5E-51 407.3 36.0 337 100-452 2-389 (720)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.4E-45 5.2E-50 384.3 35.6 314 117-450 12-390 (844)
45 PRK01172 ski2-like helicase; P 100.0 1.7E-45 3.6E-50 395.0 34.0 331 100-451 2-378 (674)
46 TIGR00580 mfd transcription-re 100.0 3E-44 6.5E-49 386.8 41.0 336 106-466 436-787 (926)
47 KOG0329 ATP-dependent RNA heli 100.0 3.6E-46 7.9E-51 327.0 14.9 334 99-473 42-378 (387)
48 COG1201 Lhr Lhr-like helicases 100.0 4.3E-44 9.3E-49 372.8 32.7 336 106-450 8-361 (814)
49 PRK10917 ATP-dependent DNA hel 100.0 3.8E-43 8.3E-48 373.8 40.3 337 108-468 248-606 (681)
50 PRK10689 transcription-repair 100.0 6.8E-43 1.5E-47 384.1 41.5 352 107-483 586-956 (1147)
51 TIGR00643 recG ATP-dependent D 100.0 1.3E-42 2.8E-47 367.5 38.9 348 110-481 225-596 (630)
52 PRK09751 putative ATP-dependen 100.0 6.7E-42 1.4E-46 377.8 33.1 304 141-447 1-381 (1490)
53 COG1111 MPH1 ERCC4-like helica 100.0 8.7E-41 1.9E-45 321.6 34.7 329 119-457 13-489 (542)
54 PHA02653 RNA helicase NPH-II; 100.0 3.5E-41 7.5E-46 351.5 32.7 310 124-453 167-516 (675)
55 COG0514 RecQ Superfamily II DN 100.0 1.5E-41 3.1E-46 342.0 28.2 325 117-463 13-349 (590)
56 COG1204 Superfamily II helicas 100.0 1.9E-41 4E-46 358.1 28.2 340 104-455 14-413 (766)
57 PRK09401 reverse gyrase; Revie 100.0 3.1E-40 6.8E-45 363.9 35.5 304 111-438 70-431 (1176)
58 PHA02558 uvsW UvsW helicase; P 100.0 1.8E-40 3.9E-45 342.8 31.7 304 119-443 112-444 (501)
59 COG1202 Superfamily II helicas 100.0 1.8E-41 4E-46 328.2 21.2 375 57-451 157-553 (830)
60 TIGR01587 cas3_core CRISPR-ass 100.0 5.4E-40 1.2E-44 328.2 28.5 312 138-464 1-352 (358)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.6E-39 3.4E-44 346.9 33.5 304 126-454 7-339 (819)
62 PRK14701 reverse gyrase; Provi 100.0 1.1E-39 2.3E-44 366.6 32.9 328 108-457 66-462 (1638)
63 PRK12898 secA preprotein trans 100.0 2.4E-39 5.1E-44 332.4 32.4 316 121-453 103-588 (656)
64 KOG0952 DNA/RNA helicase MER3/ 100.0 3.7E-40 8E-45 338.6 25.4 384 69-461 58-501 (1230)
65 PRK11664 ATP-dependent RNA hel 100.0 8.3E-39 1.8E-43 342.3 32.2 303 126-453 10-341 (812)
66 TIGR01054 rgy reverse gyrase. 100.0 2.6E-38 5.6E-43 349.2 34.1 293 108-423 65-409 (1171)
67 PRK09200 preprotein translocas 100.0 9.5E-38 2.1E-42 327.3 31.5 319 118-453 76-543 (790)
68 PRK13766 Hef nuclease; Provisi 100.0 7.3E-37 1.6E-41 334.3 39.4 323 119-451 13-479 (773)
69 KOG0349 Putative DEAD-box RNA 100.0 3.2E-39 7E-44 302.7 17.5 309 173-483 287-679 (725)
70 KOG0354 DEAD-box like helicase 100.0 1.3E-37 2.9E-42 316.6 30.6 334 106-450 47-528 (746)
71 TIGR03714 secA2 accessory Sec 100.0 3E-37 6.5E-42 320.4 31.3 319 121-453 68-539 (762)
72 KOG0951 RNA helicase BRR2, DEA 100.0 2.7E-37 5.9E-42 321.1 23.9 404 48-461 235-712 (1674)
73 TIGR00963 secA preprotein tran 100.0 2.8E-36 6E-41 311.2 30.9 316 121-453 56-519 (745)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 1E-35 2.2E-40 294.3 31.3 291 125-436 1-357 (357)
75 TIGR00603 rad25 DNA repair hel 100.0 8.1E-36 1.8E-40 309.8 30.6 320 120-466 254-624 (732)
76 COG1205 Distinct helicase fami 100.0 5.1E-35 1.1E-39 313.6 32.5 334 106-449 55-420 (851)
77 KOG0351 ATP-dependent DNA heli 100.0 4.5E-35 9.7E-40 311.6 28.5 332 114-462 257-603 (941)
78 PRK11131 ATP-dependent RNA hel 100.0 4E-34 8.6E-39 311.1 30.2 299 126-453 79-413 (1294)
79 KOG0352 ATP-dependent DNA heli 100.0 3E-34 6.6E-39 269.1 20.7 329 110-457 7-368 (641)
80 COG1200 RecG RecG-like helicas 100.0 4.8E-32 1E-36 272.3 36.0 339 106-468 247-608 (677)
81 PRK04914 ATP-dependent helicas 100.0 9.3E-33 2E-37 296.7 32.4 332 121-465 152-617 (956)
82 COG1061 SSL2 DNA or RNA helica 100.0 1.2E-32 2.5E-37 279.1 26.8 294 120-437 35-375 (442)
83 KOG0353 ATP-dependent DNA heli 100.0 6.4E-33 1.4E-37 256.6 22.4 332 103-452 75-468 (695)
84 PRK05580 primosome assembly pr 100.0 5E-31 1.1E-35 279.9 38.5 315 120-454 143-552 (679)
85 PRK09694 helicase Cas3; Provis 100.0 7.3E-31 1.6E-35 280.5 36.4 353 119-481 284-727 (878)
86 cd00268 DEADc DEAD-box helicas 100.0 3.4E-31 7.5E-36 243.1 24.6 202 101-305 1-202 (203)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.7E-31 5.9E-36 290.2 27.7 302 127-453 73-406 (1283)
88 COG1197 Mfd Transcription-repa 100.0 3.5E-29 7.5E-34 265.1 34.7 337 105-465 578-929 (1139)
89 PRK13104 secA preprotein trans 100.0 8.1E-30 1.8E-34 266.9 28.7 316 121-453 82-589 (896)
90 KOG0947 Cytoplasmic exosomal R 100.0 2.8E-30 6.1E-35 263.2 24.0 309 119-450 295-722 (1248)
91 TIGR00595 priA primosomal prot 100.0 6.2E-29 1.3E-33 254.9 31.0 292 140-452 1-382 (505)
92 PRK12904 preprotein translocas 100.0 3.5E-29 7.6E-34 262.1 29.3 316 121-453 81-575 (830)
93 KOG0950 DNA polymerase theta/e 100.0 2.7E-29 5.9E-34 257.9 26.4 344 106-461 208-621 (1008)
94 KOG0948 Nuclear exosomal RNA h 100.0 3.5E-30 7.5E-35 256.6 18.7 310 119-451 127-539 (1041)
95 PRK12899 secA preprotein trans 100.0 9.9E-29 2.1E-33 258.2 29.3 148 102-259 65-228 (970)
96 PRK12906 secA preprotein trans 100.0 6.1E-29 1.3E-33 259.2 26.1 316 121-453 80-555 (796)
97 COG4581 Superfamily II RNA hel 100.0 1.3E-28 2.7E-33 260.8 27.1 310 120-450 118-536 (1041)
98 PRK11448 hsdR type I restricti 100.0 1.9E-28 4.2E-33 269.3 29.4 308 120-439 412-801 (1123)
99 PLN03142 Probable chromatin-re 100.0 5.6E-28 1.2E-32 260.8 30.3 318 121-451 169-599 (1033)
100 COG4098 comFA Superfamily II D 100.0 1.2E-26 2.6E-31 213.0 31.1 306 121-455 97-420 (441)
101 PRK13107 preprotein translocas 100.0 1.6E-26 3.6E-31 241.4 24.4 316 121-453 82-593 (908)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-26 2.9E-31 206.2 18.8 165 123-293 1-168 (169)
103 COG1203 CRISPR-associated heli 99.9 4.1E-25 8.9E-30 237.1 25.9 325 121-452 195-551 (733)
104 KOG0385 Chromatin remodeling c 99.9 1.6E-24 3.5E-29 217.3 26.2 318 121-451 167-597 (971)
105 COG1643 HrpA HrpA-like helicas 99.9 1.7E-24 3.7E-29 228.3 26.9 306 125-452 54-388 (845)
106 KOG0387 Transcription-coupled 99.9 4.6E-23 1E-27 207.9 26.3 337 104-461 196-671 (923)
107 TIGR00631 uvrb excinuclease AB 99.9 8.5E-23 1.8E-27 214.5 28.1 135 327-462 424-564 (655)
108 KOG0922 DEAH-box RNA helicase 99.9 9.4E-23 2E-27 203.5 25.5 303 125-452 55-391 (674)
109 TIGR00348 hsdR type I site-spe 99.9 1.9E-22 4.2E-27 214.3 28.6 300 122-438 239-634 (667)
110 COG0556 UvrB Helicase subunit 99.9 4.1E-22 8.8E-27 193.3 26.2 168 277-453 386-559 (663)
111 COG4096 HsdR Type I site-speci 99.9 9.6E-23 2.1E-27 208.0 22.6 296 120-438 164-525 (875)
112 KOG0920 ATP-dependent RNA heli 99.9 2.8E-22 6.2E-27 210.7 26.4 316 122-452 174-545 (924)
113 TIGR01407 dinG_rel DnaQ family 99.9 2.5E-21 5.5E-26 212.2 34.0 346 106-465 231-830 (850)
114 COG1110 Reverse gyrase [DNA re 99.9 7.2E-22 1.6E-26 204.6 27.4 289 109-422 70-416 (1187)
115 COG1198 PriA Primosomal protei 99.9 2.1E-21 4.6E-26 202.1 30.2 316 120-455 197-607 (730)
116 PRK12900 secA preprotein trans 99.9 4.3E-22 9.3E-27 209.3 24.1 128 324-453 577-713 (1025)
117 PRK05298 excinuclease ABC subu 99.9 3.2E-21 7E-26 204.3 30.4 147 328-475 429-590 (652)
118 KOG0384 Chromodomain-helicase 99.9 2E-22 4.3E-27 211.6 18.9 316 120-451 369-811 (1373)
119 KOG0923 mRNA splicing factor A 99.9 7.1E-22 1.5E-26 195.4 20.8 306 120-450 264-605 (902)
120 KOG0390 DNA repair protein, SN 99.9 1.5E-20 3.1E-25 194.7 28.0 321 121-448 238-702 (776)
121 PRK12326 preprotein translocas 99.9 2.3E-20 4.9E-25 191.3 28.8 314 121-452 78-548 (764)
122 KOG0924 mRNA splicing factor A 99.9 3.3E-21 7.2E-26 191.0 20.0 303 125-451 360-697 (1042)
123 smart00487 DEXDc DEAD-like hel 99.9 1.3E-20 2.8E-25 171.9 21.3 187 117-309 4-192 (201)
124 KOG0949 Predicted helicase, DE 99.9 2.9E-21 6.2E-26 198.2 17.0 158 121-288 511-672 (1330)
125 KOG0392 SNF2 family DNA-depend 99.9 3.2E-20 7E-25 194.4 22.3 323 121-451 975-1454(1549)
126 PRK13103 secA preprotein trans 99.9 6.8E-20 1.5E-24 192.3 24.3 315 121-453 82-593 (913)
127 KOG0389 SNF2 family DNA-depend 99.9 2.2E-20 4.8E-25 188.4 19.4 319 121-451 399-888 (941)
128 PRK07246 bifunctional ATP-depe 99.8 1.9E-18 4.1E-23 187.0 31.8 327 121-465 245-799 (820)
129 KOG1000 Chromatin remodeling p 99.8 1.4E-19 3E-24 173.9 19.8 313 120-449 197-599 (689)
130 COG4889 Predicted helicase [Ge 99.8 2.5E-20 5.3E-25 189.2 13.5 358 99-468 140-618 (1518)
131 PRK12903 secA preprotein trans 99.8 1.8E-18 3.9E-23 179.7 25.4 315 121-453 78-541 (925)
132 KOG1123 RNA polymerase II tran 99.8 3.3E-19 7.2E-24 171.4 17.1 306 120-451 301-653 (776)
133 KOG0926 DEAH-box RNA helicase 99.8 2.3E-18 5E-23 173.8 19.7 296 134-451 269-704 (1172)
134 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.8E-16 4E-21 164.3 34.0 120 343-464 469-630 (636)
135 cd00079 HELICc Helicase superf 99.8 9.7E-19 2.1E-23 148.4 14.3 119 329-447 12-131 (131)
136 PRK08074 bifunctional ATP-depe 99.8 8.9E-17 1.9E-21 177.2 32.9 136 330-465 736-909 (928)
137 KOG0925 mRNA splicing factor A 99.8 5.4E-18 1.2E-22 162.7 19.5 326 98-451 24-387 (699)
138 KOG4150 Predicted ATP-dependen 99.8 1.1E-17 2.5E-22 163.1 19.3 327 114-449 279-638 (1034)
139 CHL00122 secA preprotein trans 99.8 4.3E-17 9.3E-22 170.6 24.7 273 121-411 76-491 (870)
140 KOG0391 SNF2 family DNA-depend 99.8 5.4E-17 1.2E-21 169.1 22.3 126 327-452 1258-1386(1958)
141 PF00271 Helicase_C: Helicase 99.8 2.3E-18 5.1E-23 131.8 9.2 78 362-439 1-78 (78)
142 KOG0953 Mitochondrial RNA heli 99.8 2.1E-17 4.6E-22 161.2 16.9 265 139-451 194-477 (700)
143 KOG0951 RNA helicase BRR2, DEA 99.7 1.2E-16 2.6E-21 168.3 20.4 312 121-460 1143-1503(1674)
144 KOG1002 Nucleotide excision re 99.7 2.2E-16 4.9E-21 151.9 20.0 139 328-468 619-764 (791)
145 cd00046 DEXDc DEAD-like helica 99.7 1.1E-16 2.3E-21 137.3 16.4 144 137-287 1-144 (144)
146 KOG0388 SNF2 family DNA-depend 99.7 7.6E-17 1.7E-21 160.8 16.8 126 326-451 1025-1154(1185)
147 PRK12902 secA preprotein trans 99.7 1.2E-15 2.6E-20 159.6 26.3 274 121-411 85-506 (939)
148 KOG0386 Chromatin remodeling c 99.7 5.3E-17 1.2E-21 168.1 14.8 317 121-458 394-843 (1157)
149 PF04851 ResIII: Type III rest 99.7 2E-16 4.3E-21 142.5 14.8 152 121-288 3-183 (184)
150 PRK11747 dinG ATP-dependent DN 99.7 3.2E-14 6.9E-19 152.3 32.2 130 330-463 519-688 (697)
151 KOG4439 RNA polymerase II tran 99.7 1.9E-15 4E-20 151.3 19.8 125 327-451 727-858 (901)
152 TIGR02562 cas3_yersinia CRISPR 99.7 2.3E-14 5.1E-19 152.2 24.1 311 121-441 408-882 (1110)
153 COG1199 DinG Rad3-related DNA 99.6 7.1E-14 1.5E-18 150.7 28.2 118 345-465 480-633 (654)
154 TIGR00604 rad3 DNA repair heli 99.6 1.9E-13 4E-18 147.6 29.5 142 330-481 506-695 (705)
155 smart00490 HELICc helicase sup 99.6 1.4E-15 3.1E-20 117.3 9.1 81 359-439 2-82 (82)
156 PF06862 DUF1253: Protein of u 99.6 6.2E-13 1.4E-17 131.5 29.2 289 172-461 37-425 (442)
157 PRK12901 secA preprotein trans 99.6 5.7E-14 1.2E-18 148.6 20.3 128 324-453 607-743 (1112)
158 PRK14873 primosome assembly pr 99.6 4.7E-13 1E-17 140.9 25.6 277 142-451 166-539 (665)
159 COG0553 HepA Superfamily II DN 99.6 1.7E-13 3.8E-18 153.3 23.0 337 120-465 337-834 (866)
160 KOG1015 Transcription regulato 99.5 3.3E-13 7.2E-18 139.0 18.4 121 329-449 1126-1273(1567)
161 PF02399 Herpes_ori_bp: Origin 99.5 1.4E-12 3E-17 135.5 22.9 288 139-451 52-388 (824)
162 KOG2340 Uncharacterized conser 99.5 6.3E-12 1.4E-16 122.7 20.4 343 119-462 214-679 (698)
163 COG0610 Type I site-specific r 99.4 3.9E-11 8.5E-16 132.1 24.6 286 137-438 274-636 (962)
164 PF00176 SNF2_N: SNF2 family N 99.4 5.2E-12 1.1E-16 123.0 14.2 156 125-287 1-172 (299)
165 PF07652 Flavi_DEAD: Flaviviru 99.3 4.4E-12 9.6E-17 105.0 8.6 135 136-291 4-140 (148)
166 COG0653 SecA Preprotein transl 99.3 3.7E-10 8.1E-15 118.5 19.8 316 121-452 78-546 (822)
167 smart00488 DEXDc2 DEAD-like he 99.2 1.2E-10 2.7E-15 111.7 14.0 73 121-195 8-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.2 1.2E-10 2.7E-15 111.7 14.0 73 121-195 8-84 (289)
169 KOG0921 Dosage compensation co 99.2 3.2E-10 6.9E-15 117.0 14.1 301 135-449 392-772 (1282)
170 PRK15483 type III restriction- 99.2 1.7E-08 3.7E-13 108.6 27.7 73 394-466 501-583 (986)
171 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.2E-08 2.5E-13 95.5 14.2 129 119-259 75-210 (266)
172 KOG1016 Predicted DNA helicase 98.9 4.8E-08 1E-12 99.7 14.8 116 345-460 720-856 (1387)
173 TIGR00596 rad1 DNA repair prot 98.8 1.3E-07 2.7E-12 101.9 18.0 66 222-287 7-72 (814)
174 KOG0952 DNA/RNA helicase MER3/ 98.8 9.7E-09 2.1E-13 108.3 8.5 260 121-396 927-1207(1230)
175 KOG1001 Helicase-like transcri 98.8 6.1E-08 1.3E-12 102.1 13.2 118 329-446 522-643 (674)
176 COG3587 Restriction endonuclea 98.7 4.5E-06 9.8E-11 87.1 22.4 74 393-466 482-568 (985)
177 PF13604 AAA_30: AAA domain; P 98.6 1.8E-07 3.9E-12 84.7 10.0 123 121-286 1-130 (196)
178 PF13872 AAA_34: P-loop contai 98.6 5.3E-07 1.1E-11 84.6 13.2 170 103-291 25-224 (303)
179 PF02562 PhoH: PhoH-like prote 98.6 3.7E-07 8.1E-12 82.0 10.6 149 120-286 3-155 (205)
180 PF13086 AAA_11: AAA domain; P 98.6 7.5E-07 1.6E-11 83.2 12.5 73 121-194 1-75 (236)
181 PF13307 Helicase_C_2: Helicas 98.5 4.5E-07 9.8E-12 79.9 8.5 105 345-451 10-150 (167)
182 TIGR00376 DNA helicase, putati 98.5 8.4E-05 1.8E-09 79.3 26.2 67 120-194 156-223 (637)
183 KOG1802 RNA helicase nonsense 98.3 1.4E-05 3.1E-10 81.1 15.0 83 113-206 402-484 (935)
184 PF09848 DUF2075: Uncharacteri 98.3 5.7E-05 1.2E-09 75.2 18.9 108 138-273 3-117 (352)
185 PF12340 DUF3638: Protein of u 98.3 1.4E-05 3.1E-10 72.5 12.5 151 100-260 4-186 (229)
186 PRK10875 recD exonuclease V su 98.2 1.5E-05 3.3E-10 83.9 13.1 143 122-286 153-301 (615)
187 TIGR01447 recD exodeoxyribonuc 98.2 1.9E-05 4.1E-10 83.1 13.6 143 123-286 147-295 (586)
188 PRK10536 hypothetical protein; 98.2 4.3E-05 9.4E-10 70.7 14.1 143 117-284 55-210 (262)
189 KOG1132 Helicase of the DEAD s 98.2 1E-05 2.3E-10 84.8 10.9 137 121-260 21-261 (945)
190 TIGR01448 recD_rel helicase, p 98.2 2.7E-05 5.8E-10 84.3 14.2 133 113-286 315-452 (720)
191 KOG1803 DNA helicase [Replicat 98.2 9.7E-06 2.1E-10 81.9 9.8 65 121-193 185-250 (649)
192 PF13245 AAA_19: Part of AAA d 97.9 6.1E-05 1.3E-09 56.4 7.7 60 129-192 2-62 (76)
193 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00019 4.1E-09 78.1 13.0 122 120-284 351-474 (744)
194 PRK13889 conjugal transfer rel 97.8 0.00023 4.9E-09 78.7 13.2 124 120-286 345-470 (988)
195 PRK04296 thymidine kinase; Pro 97.7 8.5E-05 1.8E-09 66.9 7.3 108 138-286 4-114 (190)
196 TIGR02760 TraI_TIGR conjugativ 97.7 0.004 8.6E-08 74.5 21.6 237 121-394 429-686 (1960)
197 smart00492 HELICc3 helicase su 97.7 0.00039 8.4E-09 59.1 9.7 76 374-449 27-136 (141)
198 PRK13826 Dtr system oriT relax 97.6 0.0012 2.5E-08 73.7 15.6 124 120-286 380-505 (1102)
199 PRK06526 transposase; Provisio 97.6 0.00026 5.7E-09 66.6 9.1 111 131-290 93-204 (254)
200 KOG1805 DNA replication helica 97.6 0.00038 8.2E-09 74.1 10.9 146 95-260 647-810 (1100)
201 COG1875 NYN ribonuclease and A 97.6 0.00062 1.3E-08 65.2 11.0 146 117-284 224-385 (436)
202 smart00491 HELICc2 helicase su 97.6 0.00036 7.8E-09 59.4 8.6 70 381-450 31-138 (142)
203 COG3421 Uncharacterized protei 97.6 0.00045 9.7E-09 69.9 10.2 145 141-298 2-175 (812)
204 PRK08181 transposase; Validate 97.5 0.002 4.4E-08 61.0 13.3 120 123-291 89-213 (269)
205 PRK14974 cell division protein 97.5 0.0022 4.7E-08 62.7 13.4 130 138-299 142-276 (336)
206 PF13871 Helicase_C_4: Helicas 97.5 0.00057 1.2E-08 64.3 9.0 82 385-466 52-145 (278)
207 PRK12723 flagellar biosynthesi 97.4 0.0063 1.4E-07 60.7 15.8 130 137-298 175-309 (388)
208 PF13401 AAA_22: AAA domain; P 97.4 0.0006 1.3E-08 57.2 7.5 19 136-154 4-22 (131)
209 KOG1131 RNA polymerase II tran 97.4 0.0017 3.6E-08 64.8 11.0 72 119-194 14-89 (755)
210 cd00009 AAA The AAA+ (ATPases 97.3 0.0025 5.4E-08 54.1 10.8 17 136-152 19-35 (151)
211 PF00580 UvrD-helicase: UvrD/R 97.3 0.00067 1.5E-08 66.3 7.9 123 122-256 1-125 (315)
212 PRK07952 DNA replication prote 97.2 0.0083 1.8E-07 56.0 13.9 109 137-292 100-210 (244)
213 PRK14722 flhF flagellar biosyn 97.2 0.0029 6.4E-08 62.5 11.3 132 136-299 137-270 (374)
214 KOG0383 Predicted helicase [Ge 97.2 3.1E-05 6.6E-10 81.1 -3.0 79 328-407 614-696 (696)
215 PRK11889 flhF flagellar biosyn 97.2 0.013 2.8E-07 58.0 14.4 128 137-299 242-375 (436)
216 smart00382 AAA ATPases associa 97.1 0.0014 2.9E-08 55.3 6.8 41 136-184 2-42 (148)
217 COG2805 PilT Tfp pilus assembl 97.1 0.0018 4E-08 60.5 7.4 53 92-164 99-152 (353)
218 KOG0989 Replication factor C, 97.1 0.0031 6.6E-08 59.2 8.8 60 241-301 124-186 (346)
219 PRK06921 hypothetical protein; 97.0 0.014 3.1E-07 55.4 13.6 45 136-188 117-161 (266)
220 PF00448 SRP54: SRP54-type pro 97.0 0.0013 2.8E-08 59.4 6.1 54 245-298 82-136 (196)
221 COG1419 FlhF Flagellar GTP-bin 97.0 0.016 3.4E-07 57.2 13.4 136 136-303 203-340 (407)
222 KOG1133 Helicase of the DEAD s 97.0 0.056 1.2E-06 56.2 17.4 210 247-483 527-802 (821)
223 PRK05707 DNA polymerase III su 96.9 0.0043 9.3E-08 60.8 9.3 42 121-163 3-48 (328)
224 PRK05642 DNA replication initi 96.9 0.0037 8E-08 58.3 8.1 44 246-289 97-141 (234)
225 PRK14712 conjugal transfer nic 96.9 0.0095 2E-07 68.9 12.6 64 120-189 834-901 (1623)
226 KOG0298 DEAD box-containing he 96.9 0.0048 1E-07 67.9 9.5 153 136-293 374-556 (1394)
227 PF05970 PIF1: PIF1-like helic 96.9 0.0039 8.5E-08 62.3 8.3 60 121-188 1-66 (364)
228 PRK08769 DNA polymerase III su 96.8 0.006 1.3E-07 59.3 9.3 143 120-286 3-152 (319)
229 PRK08116 hypothetical protein; 96.8 0.023 4.9E-07 54.1 12.9 109 138-292 116-226 (268)
230 cd01124 KaiC KaiC is a circadi 96.8 0.0046 1E-07 55.4 7.8 49 139-196 2-50 (187)
231 PRK13709 conjugal transfer nic 96.8 0.015 3.2E-07 68.2 13.6 127 120-286 966-1099(1747)
232 PF14617 CMS1: U3-containing 9 96.8 0.0038 8.2E-08 58.0 6.9 87 170-257 124-212 (252)
233 PRK05703 flhF flagellar biosyn 96.7 0.033 7.1E-07 56.6 14.1 129 136-299 221-355 (424)
234 PRK11773 uvrD DNA-dependent he 96.7 0.0072 1.6E-07 66.2 10.0 70 121-196 9-78 (721)
235 TIGR01075 uvrD DNA helicase II 96.7 0.0083 1.8E-07 65.7 10.4 71 120-196 3-73 (715)
236 PRK08084 DNA replication initi 96.7 0.0064 1.4E-07 56.8 8.1 44 247-290 98-144 (235)
237 PRK08727 hypothetical protein; 96.7 0.018 3.9E-07 53.6 11.0 47 245-291 92-140 (233)
238 PRK09183 transposase/IS protei 96.7 0.092 2E-06 49.7 15.7 23 133-155 99-121 (259)
239 PHA02533 17 large terminase pr 96.7 0.013 2.9E-07 61.1 10.8 149 120-287 58-210 (534)
240 PRK12377 putative replication 96.6 0.036 7.8E-07 51.9 12.5 106 137-290 102-209 (248)
241 cd01120 RecA-like_NTPases RecA 96.6 0.016 3.5E-07 50.3 9.8 38 139-184 2-39 (165)
242 KOG0701 dsRNA-specific nucleas 96.6 0.0027 5.9E-08 72.4 5.7 93 346-438 294-398 (1606)
243 PRK06893 DNA replication initi 96.6 0.0071 1.5E-07 56.2 7.7 45 245-289 90-136 (229)
244 PRK06731 flhF flagellar biosyn 96.6 0.071 1.5E-06 50.5 14.1 129 136-299 75-209 (270)
245 PRK14086 dnaA chromosomal repl 96.5 0.0083 1.8E-07 62.8 8.3 48 245-292 376-425 (617)
246 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.018 3.9E-07 53.3 9.9 20 135-154 37-56 (226)
247 PRK11054 helD DNA helicase IV; 96.5 0.011 2.4E-07 63.7 9.4 78 120-203 195-272 (684)
248 PRK14723 flhF flagellar biosyn 96.5 0.032 6.9E-07 60.1 12.4 141 137-310 186-333 (767)
249 COG1484 DnaC DNA replication p 96.5 0.027 5.8E-07 53.1 10.6 51 135-194 104-154 (254)
250 PRK10917 ATP-dependent DNA hel 96.5 0.015 3.2E-07 63.1 10.0 86 333-418 299-389 (681)
251 PRK10919 ATP-dependent DNA hel 96.4 0.017 3.7E-07 62.6 10.1 70 121-196 2-71 (672)
252 PRK00149 dnaA chromosomal repl 96.4 0.039 8.4E-07 56.9 12.4 110 137-293 149-260 (450)
253 PRK12422 chromosomal replicati 96.4 0.021 4.5E-07 58.5 10.1 110 137-295 142-253 (445)
254 PRK12402 replication factor C 96.4 0.027 5.8E-07 55.7 10.8 39 245-284 124-162 (337)
255 PF13177 DNA_pol3_delta2: DNA 96.4 0.022 4.8E-07 49.7 9.0 42 245-287 101-142 (162)
256 COG2256 MGS1 ATPase related to 96.4 0.01 2.2E-07 57.9 7.2 18 138-155 50-67 (436)
257 PRK06835 DNA replication prote 96.4 0.066 1.4E-06 52.4 13.0 111 135-292 182-294 (329)
258 PF05127 Helicase_RecD: Helica 96.3 0.0028 6E-08 55.7 3.0 123 140-287 1-123 (177)
259 TIGR02760 TraI_TIGR conjugativ 96.3 0.025 5.5E-07 67.9 11.7 62 120-188 1018-1084(1960)
260 PRK06964 DNA polymerase III su 96.3 0.023 5E-07 55.8 9.5 41 122-163 2-47 (342)
261 PRK07764 DNA polymerase III su 96.3 0.017 3.7E-07 63.3 9.3 39 245-284 119-157 (824)
262 PRK08903 DnaA regulatory inact 96.3 0.023 5E-07 52.7 9.1 43 246-289 90-133 (227)
263 PF03354 Terminase_1: Phage Te 96.3 0.015 3.2E-07 60.5 8.3 149 124-284 1-160 (477)
264 PRK00771 signal recognition pa 96.2 0.032 6.9E-07 56.7 10.3 53 247-299 176-229 (437)
265 PRK07003 DNA polymerase III su 96.2 0.036 7.9E-07 59.2 10.9 39 245-284 118-156 (830)
266 PRK14956 DNA polymerase III su 96.2 0.016 3.4E-07 59.1 8.0 24 139-163 43-66 (484)
267 COG3973 Superfamily I DNA and 96.2 0.054 1.2E-06 55.6 11.5 91 105-197 188-285 (747)
268 PRK12727 flagellar biosynthesi 96.2 0.17 3.6E-06 52.3 15.1 64 230-298 416-481 (559)
269 TIGR01074 rep ATP-dependent DN 96.2 0.03 6.5E-07 61.0 10.6 69 122-196 2-70 (664)
270 TIGR02881 spore_V_K stage V sp 96.2 0.059 1.3E-06 51.2 11.2 19 137-155 43-61 (261)
271 PRK06871 DNA polymerase III su 96.1 0.056 1.2E-06 52.7 11.1 42 244-286 105-146 (325)
272 PRK06645 DNA polymerase III su 96.1 0.027 5.8E-07 58.4 9.0 25 138-163 45-69 (507)
273 PF05496 RuvB_N: Holliday junc 96.1 0.029 6.2E-07 51.0 8.1 18 138-155 52-69 (233)
274 PRK11331 5-methylcytosine-spec 96.0 0.022 4.8E-07 57.4 7.9 33 122-154 180-212 (459)
275 TIGR00643 recG ATP-dependent D 96.0 0.028 6E-07 60.6 9.2 86 333-418 273-363 (630)
276 TIGR00362 DnaA chromosomal rep 96.0 0.067 1.5E-06 54.4 11.6 109 138-293 138-248 (405)
277 PRK14958 DNA polymerase III su 96.0 0.037 8.1E-07 57.6 9.7 39 245-284 118-156 (509)
278 PRK14088 dnaA chromosomal repl 96.0 0.096 2.1E-06 53.7 12.5 113 138-296 132-246 (440)
279 PTZ00112 origin recognition co 96.0 0.078 1.7E-06 57.4 12.0 23 139-162 784-806 (1164)
280 COG1444 Predicted P-loop ATPas 96.0 0.05 1.1E-06 58.1 10.6 142 119-287 212-356 (758)
281 PRK14964 DNA polymerase III su 96.0 0.14 3E-06 52.8 13.5 40 244-284 114-153 (491)
282 PRK14087 dnaA chromosomal repl 95.9 0.038 8.2E-07 56.8 9.4 109 138-291 143-253 (450)
283 PHA02544 44 clamp loader, smal 95.9 0.034 7.3E-07 54.5 8.8 40 246-285 100-139 (316)
284 PRK08699 DNA polymerase III su 95.9 0.056 1.2E-06 52.9 10.1 41 122-163 2-47 (325)
285 PHA03333 putative ATPase subun 95.9 0.15 3.3E-06 53.7 13.5 69 122-197 170-241 (752)
286 PF05621 TniB: Bacterial TniB 95.9 0.026 5.6E-07 53.7 7.4 53 137-193 62-117 (302)
287 PLN03025 replication factor C 95.9 0.091 2E-06 51.5 11.6 38 246-284 99-136 (319)
288 PRK08533 flagellar accessory p 95.9 0.066 1.4E-06 49.7 10.1 53 135-196 23-75 (230)
289 PRK12726 flagellar biosynthesi 95.9 0.15 3.2E-06 50.5 12.4 129 136-298 206-339 (407)
290 PRK07993 DNA polymerase III su 95.8 0.041 8.9E-07 54.1 8.8 137 121-286 2-147 (334)
291 TIGR01425 SRP54_euk signal rec 95.8 0.11 2.3E-06 52.6 11.8 54 246-299 182-236 (429)
292 PRK07994 DNA polymerase III su 95.8 0.046 9.9E-07 58.2 9.6 38 245-283 118-155 (647)
293 COG0470 HolB ATPase involved i 95.8 0.048 1.1E-06 53.5 9.3 41 244-285 107-147 (325)
294 PRK00411 cdc6 cell division co 95.8 0.096 2.1E-06 53.1 11.6 26 137-163 56-81 (394)
295 TIGR01547 phage_term_2 phage t 95.7 0.033 7.2E-07 56.5 7.9 136 138-289 3-142 (396)
296 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.1 2.2E-06 45.1 9.6 53 244-296 93-147 (159)
297 PRK14961 DNA polymerase III su 95.7 0.064 1.4E-06 53.6 9.6 39 245-284 118-156 (363)
298 PF13173 AAA_14: AAA domain 95.7 0.1 2.2E-06 43.5 9.4 38 246-286 61-98 (128)
299 PRK14949 DNA polymerase III su 95.6 0.11 2.4E-06 56.8 11.6 43 245-289 118-160 (944)
300 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.053 1.2E-06 50.7 8.3 53 136-197 21-73 (237)
301 PRK06090 DNA polymerase III su 95.6 0.069 1.5E-06 51.9 9.1 136 121-286 3-147 (319)
302 TIGR03015 pepcterm_ATPase puta 95.6 0.058 1.2E-06 51.4 8.6 34 121-154 23-61 (269)
303 PRK12323 DNA polymerase III su 95.6 0.057 1.2E-06 56.9 8.9 41 244-285 122-162 (700)
304 TIGR00064 ftsY signal recognit 95.6 0.29 6.3E-06 46.7 13.2 55 245-299 153-214 (272)
305 PRK08939 primosomal protein Dn 95.5 0.17 3.6E-06 49.2 11.6 108 136-292 156-266 (306)
306 PRK14965 DNA polymerase III su 95.5 0.16 3.4E-06 54.0 12.3 40 244-284 117-156 (576)
307 PF00004 AAA: ATPase family as 95.5 0.12 2.5E-06 43.0 9.4 16 139-154 1-16 (132)
308 KOG0991 Replication factor C, 95.5 0.05 1.1E-06 49.2 7.2 42 245-287 112-153 (333)
309 PRK14952 DNA polymerase III su 95.5 0.14 3E-06 54.1 11.8 40 244-284 116-155 (584)
310 TIGR00580 mfd transcription-re 95.5 0.063 1.4E-06 59.9 9.6 82 337-418 493-579 (926)
311 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.11 2.4E-06 48.3 10.0 53 135-196 19-71 (229)
312 PRK13833 conjugal transfer pro 95.5 0.049 1.1E-06 53.0 7.8 65 113-185 122-187 (323)
313 TIGR02785 addA_Gpos recombinat 95.5 0.055 1.2E-06 62.8 9.5 123 122-257 2-126 (1232)
314 PRK08691 DNA polymerase III su 95.5 0.072 1.6E-06 56.7 9.5 40 244-284 117-156 (709)
315 PRK14969 DNA polymerase III su 95.5 0.078 1.7E-06 55.6 9.8 40 244-284 117-156 (527)
316 CHL00181 cbbX CbbX; Provisiona 95.5 0.19 4.1E-06 48.3 11.8 20 136-155 59-78 (287)
317 cd01122 GP4d_helicase GP4d_hel 95.5 0.044 9.5E-07 52.4 7.4 41 133-180 27-67 (271)
318 PRK13342 recombination factor 95.5 0.1 2.2E-06 53.2 10.3 17 138-154 38-54 (413)
319 PF00308 Bac_DnaA: Bacterial d 95.4 0.055 1.2E-06 49.9 7.6 107 138-291 36-144 (219)
320 PRK11823 DNA repair protein Ra 95.4 0.079 1.7E-06 54.4 9.4 95 129-260 68-170 (446)
321 PRK05580 primosome assembly pr 95.4 0.14 3.1E-06 55.5 11.8 94 326-420 171-266 (679)
322 PRK14960 DNA polymerase III su 95.4 0.029 6.2E-07 59.2 5.9 40 245-286 117-156 (702)
323 PRK06995 flhF flagellar biosyn 95.4 0.16 3.4E-06 52.2 11.1 19 137-155 257-275 (484)
324 PRK14957 DNA polymerase III su 95.3 0.088 1.9E-06 55.0 9.4 40 244-284 117-156 (546)
325 PTZ00293 thymidine kinase; Pro 95.3 0.12 2.6E-06 46.8 9.0 38 137-182 5-42 (211)
326 PRK07940 DNA polymerase III su 95.3 0.085 1.8E-06 53.1 8.9 46 244-291 115-160 (394)
327 COG4962 CpaF Flp pilus assembl 95.3 0.048 1E-06 52.5 6.7 61 117-186 153-214 (355)
328 PRK09111 DNA polymerase III su 95.3 0.1 2.2E-06 55.4 9.8 40 244-284 130-169 (598)
329 TIGR01073 pcrA ATP-dependent D 95.3 0.094 2E-06 57.6 10.0 72 120-197 3-74 (726)
330 PRK05986 cob(I)alamin adenolsy 95.2 0.093 2E-06 46.7 8.0 146 135-297 21-168 (191)
331 PRK14955 DNA polymerase III su 95.2 0.15 3.3E-06 51.6 10.6 25 138-163 40-64 (397)
332 PRK14950 DNA polymerase III su 95.2 0.095 2.1E-06 55.9 9.5 24 138-162 40-63 (585)
333 PRK05973 replicative DNA helic 95.2 0.18 4E-06 46.7 10.1 55 133-196 61-115 (237)
334 PRK14959 DNA polymerase III su 95.2 0.12 2.6E-06 54.6 9.9 24 138-162 40-63 (624)
335 TIGR00595 priA primosomal prot 95.2 0.12 2.7E-06 53.9 10.0 91 328-419 8-100 (505)
336 PRK14721 flhF flagellar biosyn 95.2 0.35 7.6E-06 48.8 12.8 132 136-299 191-324 (420)
337 PRK12724 flagellar biosynthesi 95.2 0.35 7.6E-06 48.6 12.5 54 245-298 298-356 (432)
338 COG1200 RecG RecG-like helicas 95.1 0.12 2.7E-06 54.0 9.6 91 327-417 294-389 (677)
339 PRK07471 DNA polymerase III su 95.1 0.16 3.5E-06 50.6 10.2 134 138-286 43-180 (365)
340 PF06745 KaiC: KaiC; InterPro 95.1 0.064 1.4E-06 49.7 7.1 125 136-286 19-159 (226)
341 TIGR00708 cobA cob(I)alamin ad 95.1 0.11 2.5E-06 45.4 8.0 53 245-297 96-150 (173)
342 PHA00729 NTP-binding motif con 95.1 0.17 3.7E-06 46.3 9.5 77 224-300 60-141 (226)
343 PHA03368 DNA packaging termina 95.1 0.1 2.3E-06 54.7 8.9 130 137-286 255-389 (738)
344 COG1435 Tdk Thymidine kinase [ 95.1 0.055 1.2E-06 47.8 5.9 89 139-259 7-95 (201)
345 PRK05563 DNA polymerase III su 95.0 0.19 4.1E-06 53.2 11.0 43 244-288 117-159 (559)
346 TIGR02928 orc1/cdc6 family rep 95.0 0.18 3.9E-06 50.5 10.4 25 137-162 41-65 (365)
347 cd01121 Sms Sms (bacterial rad 95.0 0.16 3.4E-06 50.7 9.7 97 129-259 70-171 (372)
348 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.069 1.5E-06 53.0 7.2 28 135-163 133-160 (358)
349 PRK04195 replication factor C 95.0 0.24 5.1E-06 51.6 11.5 19 136-154 39-57 (482)
350 PRK13894 conjugal transfer ATP 94.9 0.073 1.6E-06 51.9 7.0 66 111-184 124-190 (319)
351 PF05876 Terminase_GpA: Phage 94.9 0.05 1.1E-06 57.4 6.3 63 121-190 16-80 (557)
352 PRK14951 DNA polymerase III su 94.9 0.099 2.1E-06 55.5 8.4 42 245-288 123-164 (618)
353 PRK09112 DNA polymerase III su 94.9 0.22 4.7E-06 49.4 10.3 41 244-285 139-179 (351)
354 KOG0745 Putative ATP-dependent 94.9 0.039 8.5E-07 54.4 4.9 27 135-163 225-251 (564)
355 cd03115 SRP The signal recogni 94.9 0.96 2.1E-05 39.8 13.6 53 246-298 82-135 (173)
356 cd00984 DnaB_C DnaB helicase C 94.9 0.09 2E-06 49.2 7.4 39 135-180 12-50 (242)
357 TIGR02880 cbbX_cfxQ probable R 94.8 0.13 2.8E-06 49.5 8.5 20 136-155 58-77 (284)
358 PRK14954 DNA polymerase III su 94.8 0.24 5.1E-06 52.8 11.0 40 244-284 125-164 (620)
359 TIGR02782 TrbB_P P-type conjug 94.8 0.11 2.3E-06 50.4 7.8 67 111-185 108-175 (299)
360 PRK14963 DNA polymerase III su 94.8 0.11 2.4E-06 54.0 8.4 24 139-163 39-62 (504)
361 COG0593 DnaA ATPase involved i 94.8 0.17 3.7E-06 50.6 9.3 48 246-293 175-224 (408)
362 COG1474 CDC6 Cdc6-related prot 94.7 0.35 7.5E-06 48.2 11.4 26 137-163 43-68 (366)
363 COG2804 PulE Type II secretory 94.7 0.06 1.3E-06 54.6 5.9 40 123-163 243-284 (500)
364 PRK13341 recombination factor 94.7 0.15 3.2E-06 55.5 9.3 42 246-292 109-150 (725)
365 PRK14873 primosome assembly pr 94.7 0.26 5.6E-06 53.0 11.0 93 327-420 170-265 (665)
366 PRK00440 rfc replication facto 94.7 0.43 9.3E-06 46.7 12.0 39 246-285 102-140 (319)
367 PRK05896 DNA polymerase III su 94.7 0.17 3.7E-06 53.2 9.4 39 245-284 118-156 (605)
368 TIGR02525 plasmid_TraJ plasmid 94.7 0.1 2.2E-06 52.0 7.4 43 136-184 149-191 (372)
369 PRK06067 flagellar accessory p 94.7 0.32 7E-06 45.3 10.5 52 136-196 25-76 (234)
370 PRK14948 DNA polymerase III su 94.7 0.19 4E-06 53.8 9.9 26 137-163 39-64 (620)
371 PRK10867 signal recognition pa 94.6 0.4 8.8E-06 48.7 11.7 17 139-155 103-119 (433)
372 PF03969 AFG1_ATPase: AFG1-lik 94.5 0.86 1.9E-05 45.3 13.4 45 246-291 127-172 (362)
373 TIGR02639 ClpA ATP-dependent C 94.4 0.64 1.4E-05 51.1 13.7 19 137-155 204-222 (731)
374 PRK11034 clpA ATP-dependent Cl 94.4 0.33 7.2E-06 53.1 11.2 20 136-155 207-226 (758)
375 TIGR00959 ffh signal recogniti 94.4 0.41 8.9E-06 48.6 11.2 54 246-299 182-236 (428)
376 PRK10689 transcription-repair 94.3 0.19 4.1E-06 57.5 9.5 77 341-417 646-727 (1147)
377 PRK13900 type IV secretion sys 94.3 0.13 2.8E-06 50.5 7.1 44 133-185 157-200 (332)
378 COG4626 Phage terminase-like p 94.3 0.25 5.4E-06 50.7 9.2 144 121-285 61-223 (546)
379 PF02456 Adeno_IVa2: Adenoviru 94.2 0.12 2.5E-06 48.9 6.2 40 139-184 90-129 (369)
380 TIGR00678 holB DNA polymerase 94.2 0.31 6.8E-06 43.6 9.1 39 244-283 94-132 (188)
381 PRK04328 hypothetical protein; 94.1 0.37 8.1E-06 45.3 9.7 53 136-197 23-75 (249)
382 PRK14962 DNA polymerase III su 94.1 0.19 4.1E-06 51.9 8.2 23 139-162 39-61 (472)
383 PRK08451 DNA polymerase III su 94.1 0.29 6.3E-06 51.0 9.5 40 244-284 115-154 (535)
384 PF02572 CobA_CobO_BtuR: ATP:c 94.1 0.6 1.3E-05 40.9 10.0 140 139-296 6-148 (172)
385 KOG0741 AAA+-type ATPase [Post 94.0 0.26 5.7E-06 50.0 8.5 57 94-153 211-273 (744)
386 PF04665 Pox_A32: Poxvirus A32 94.0 0.21 4.5E-06 46.3 7.4 35 138-180 15-49 (241)
387 TIGR01420 pilT_fam pilus retra 93.9 0.17 3.8E-06 50.1 7.4 42 136-184 122-163 (343)
388 KOG1513 Nuclear helicase MOP-3 93.9 0.054 1.2E-06 57.1 3.7 80 388-467 851-942 (1300)
389 COG1198 PriA Primosomal protei 93.9 0.2 4.4E-06 53.9 8.1 96 321-417 221-318 (730)
390 COG2255 RuvB Holliday junction 93.9 0.2 4.3E-06 46.9 7.0 18 138-155 54-71 (332)
391 KOG2028 ATPase related to the 93.9 0.2 4.3E-06 48.5 7.1 18 138-155 164-181 (554)
392 PRK07399 DNA polymerase III su 93.8 0.38 8.2E-06 46.9 9.4 59 225-286 104-162 (314)
393 COG2909 MalT ATP-dependent tra 93.8 0.78 1.7E-05 49.5 12.1 43 246-288 129-171 (894)
394 PF10593 Z1: Z1 domain; Inter 93.8 0.17 3.6E-06 47.2 6.5 104 368-480 110-218 (239)
395 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.48 1E-05 44.9 9.8 52 136-195 36-90 (259)
396 TIGR03600 phage_DnaB phage rep 93.7 1.3 2.8E-05 45.3 13.6 37 136-179 194-230 (421)
397 PF06733 DEAD_2: DEAD_2; Inte 93.7 0.043 9.3E-07 48.6 2.4 46 216-261 113-160 (174)
398 COG0552 FtsY Signal recognitio 93.7 1.3 2.8E-05 42.8 12.2 129 139-298 142-280 (340)
399 PF01695 IstB_IS21: IstB-like 93.7 0.16 3.4E-06 45.1 5.9 47 133-188 44-90 (178)
400 PHA00012 I assembly protein 93.6 2.3 5E-05 41.1 13.6 25 139-163 4-28 (361)
401 PRK13851 type IV secretion sys 93.6 0.11 2.3E-06 51.2 5.1 44 133-185 159-202 (344)
402 PRK10436 hypothetical protein; 93.6 0.22 4.8E-06 51.1 7.5 39 123-162 203-243 (462)
403 PRK04841 transcriptional regul 93.4 0.57 1.2E-05 53.1 11.4 44 246-289 121-164 (903)
404 PF03237 Terminase_6: Terminas 93.4 1.2 2.6E-05 44.4 12.7 145 140-302 1-154 (384)
405 COG3267 ExeA Type II secretory 93.4 0.58 1.2E-05 43.3 9.0 21 134-154 48-69 (269)
406 PF05729 NACHT: NACHT domain 93.3 0.63 1.4E-05 40.2 9.2 25 138-163 2-26 (166)
407 TIGR03689 pup_AAA proteasome A 93.2 0.35 7.6E-06 50.1 8.3 18 136-153 216-233 (512)
408 PRK13764 ATPase; Provisional 93.2 0.2 4.3E-06 52.9 6.6 42 135-184 256-297 (602)
409 TIGR02655 circ_KaiC circadian 93.2 0.46 1E-05 49.5 9.3 60 128-196 250-314 (484)
410 PRK10416 signal recognition pa 93.2 1.7 3.7E-05 42.5 12.7 55 245-299 195-256 (318)
411 PF01443 Viral_helicase1: Vira 93.2 0.092 2E-06 48.8 3.8 14 139-152 1-14 (234)
412 COG2109 BtuR ATP:corrinoid ade 93.1 1.2 2.5E-05 39.3 10.0 53 246-298 122-176 (198)
413 PRK08058 DNA polymerase III su 93.0 0.52 1.1E-05 46.4 8.9 41 244-285 108-148 (329)
414 TIGR00416 sms DNA repair prote 93.0 0.71 1.5E-05 47.5 10.1 98 128-259 81-183 (454)
415 PRK07133 DNA polymerase III su 92.9 0.76 1.7E-05 49.6 10.5 43 244-288 116-158 (725)
416 COG1110 Reverse gyrase [DNA re 92.9 0.32 7E-06 53.2 7.6 61 343-403 124-190 (1187)
417 TIGR03345 VI_ClpV1 type VI sec 92.9 1.2 2.6E-05 49.7 12.4 30 126-155 192-227 (852)
418 TIGR03346 chaperone_ClpB ATP-d 92.9 0.9 2E-05 50.9 11.6 18 137-154 195-212 (852)
419 KOG0738 AAA+-type ATPase [Post 92.9 6.2 0.00013 39.0 15.4 16 137-152 246-261 (491)
420 COG3972 Superfamily I DNA and 92.9 0.84 1.8E-05 46.1 9.9 144 109-260 151-309 (660)
421 PRK06305 DNA polymerase III su 92.8 0.55 1.2E-05 48.3 9.1 39 245-284 120-158 (451)
422 PRK09354 recA recombinase A; P 92.7 0.32 6.9E-06 47.8 6.8 43 136-186 60-102 (349)
423 TIGR02012 tigrfam_recA protein 92.7 0.25 5.4E-06 48.0 6.1 43 136-186 55-97 (321)
424 TIGR02538 type_IV_pilB type IV 92.7 0.37 8.1E-06 51.1 7.9 39 123-162 301-341 (564)
425 PF03796 DnaB_C: DnaB-like hel 92.6 0.56 1.2E-05 44.5 8.4 112 137-261 20-145 (259)
426 TIGR03499 FlhF flagellar biosy 92.6 0.17 3.7E-06 48.6 4.8 19 137-155 195-213 (282)
427 PRK14953 DNA polymerase III su 92.6 0.57 1.2E-05 48.6 8.9 38 244-282 117-154 (486)
428 COG1485 Predicted ATPase [Gene 92.6 3 6.6E-05 40.6 13.0 109 137-291 66-175 (367)
429 TIGR02397 dnaX_nterm DNA polym 92.6 0.44 9.6E-06 47.4 8.0 25 138-163 38-62 (355)
430 COG1219 ClpX ATP-dependent pro 92.6 0.14 3E-06 48.7 3.9 28 134-163 95-122 (408)
431 PRK06904 replicative DNA helic 92.5 2 4.4E-05 44.4 12.8 114 138-261 223-349 (472)
432 cd01129 PulE-GspE PulE/GspE Th 92.5 0.28 6E-06 46.6 6.1 54 123-184 65-120 (264)
433 KOG1133 Helicase of the DEAD s 92.5 0.17 3.7E-06 52.8 4.8 42 121-162 15-60 (821)
434 PRK14971 DNA polymerase III su 92.5 0.55 1.2E-05 50.3 8.8 42 243-286 118-159 (614)
435 COG1197 Mfd Transcription-repa 92.5 0.65 1.4E-05 51.9 9.4 81 337-417 636-721 (1139)
436 TIGR02868 CydC thiol reductant 92.4 0.23 4.9E-06 52.5 6.0 41 244-284 486-526 (529)
437 TIGR00635 ruvB Holliday juncti 92.4 0.23 4.9E-06 48.4 5.5 17 137-153 31-47 (305)
438 PRK03992 proteasome-activating 92.4 0.45 9.8E-06 48.0 7.8 17 137-153 166-182 (389)
439 CHL00095 clpC Clp protease ATP 92.4 0.67 1.5E-05 51.7 9.8 19 137-155 201-219 (821)
440 cd01128 rho_factor Transcripti 92.4 0.5 1.1E-05 44.3 7.5 20 133-152 13-32 (249)
441 cd00983 recA RecA is a bacter 92.4 0.33 7.2E-06 47.2 6.4 43 136-186 55-97 (325)
442 cd01125 repA Hexameric Replica 92.4 1.6 3.5E-05 40.7 11.0 55 139-193 4-65 (239)
443 TIGR00614 recQ_fam ATP-depende 92.3 0.84 1.8E-05 47.4 9.8 60 343-402 50-109 (470)
444 PF02534 T4SS-DNA_transf: Type 92.3 0.15 3.4E-06 52.9 4.4 50 137-196 45-94 (469)
445 PRK10865 protein disaggregatio 92.2 0.66 1.4E-05 51.8 9.4 19 137-155 200-218 (857)
446 TIGR01243 CDC48 AAA family ATP 92.2 0.5 1.1E-05 52.0 8.4 17 137-153 488-504 (733)
447 TIGR03880 KaiC_arch_3 KaiC dom 92.2 0.78 1.7E-05 42.4 8.6 52 136-196 16-67 (224)
448 PF00437 T2SE: Type II/IV secr 92.2 0.22 4.8E-06 47.5 5.0 43 134-184 125-167 (270)
449 PF05707 Zot: Zonular occluden 92.1 0.44 9.6E-06 42.9 6.6 18 139-156 3-20 (193)
450 cd01126 TraG_VirD4 The TraG/Tr 92.1 0.12 2.6E-06 52.2 3.2 48 138-195 1-48 (384)
451 PRK13897 type IV secretion sys 92.1 0.18 4E-06 53.4 4.6 50 137-196 159-208 (606)
452 PRK06647 DNA polymerase III su 92.0 0.44 9.6E-06 50.3 7.4 24 138-162 40-63 (563)
453 TIGR01243 CDC48 AAA family ATP 91.9 1 2.3E-05 49.6 10.5 17 136-152 212-228 (733)
454 KOG0058 Peptide exporter, ABC 91.9 1.3 2.8E-05 47.0 10.4 42 244-286 620-661 (716)
455 KOG0298 DEAD box-containing he 91.8 0.27 5.8E-06 54.9 5.4 97 344-445 1221-1318(1394)
456 KOG1513 Nuclear helicase MOP-3 91.6 0.31 6.7E-06 51.7 5.5 156 120-286 263-453 (1300)
457 PRK09087 hypothetical protein; 91.5 0.76 1.6E-05 42.5 7.6 40 248-289 89-129 (226)
458 COG0630 VirB11 Type IV secreto 91.5 0.32 6.9E-06 47.4 5.3 56 120-184 126-182 (312)
459 KOG2543 Origin recognition com 91.3 2 4.3E-05 42.2 10.1 46 245-290 114-161 (438)
460 KOG0344 ATP-dependent RNA heli 91.3 2.9 6.2E-05 43.2 11.8 99 144-257 365-467 (593)
461 TIGR02533 type_II_gspE general 91.3 0.39 8.3E-06 49.9 5.9 39 123-162 227-267 (486)
462 PTZ00146 fibrillarin; Provisio 91.2 3.7 8.1E-05 39.3 11.9 37 119-155 107-151 (293)
463 TIGR02688 conserved hypothetic 91.2 1.2 2.6E-05 44.7 9.0 24 131-154 204-227 (449)
464 TIGR00767 rho transcription te 91.2 0.84 1.8E-05 45.6 7.8 26 135-161 167-192 (415)
465 PRK00080 ruvB Holliday junctio 91.1 1 2.2E-05 44.4 8.5 18 137-154 52-69 (328)
466 PRK09376 rho transcription ter 91.1 0.93 2E-05 45.1 8.0 37 125-162 155-194 (416)
467 cd01130 VirB11-like_ATPase Typ 91.0 0.52 1.1E-05 42.2 5.8 32 121-152 9-41 (186)
468 KOG0740 AAA+-type ATPase [Post 91.0 0.77 1.7E-05 46.1 7.4 52 246-297 245-309 (428)
469 PRK14970 DNA polymerase III su 90.9 1.3 2.7E-05 44.5 9.1 24 138-162 41-64 (367)
470 COG1221 PspF Transcriptional r 90.9 1.4 3.1E-05 44.0 9.1 22 133-154 98-119 (403)
471 KOG0739 AAA+-type ATPase [Post 90.8 2.8 6E-05 39.8 10.3 142 95-293 126-283 (439)
472 PRK07414 cob(I)yrinic acid a,c 90.8 1.3 2.9E-05 38.8 7.9 52 245-296 114-167 (178)
473 cd03239 ABC_SMC_head The struc 90.8 0.35 7.5E-06 42.9 4.4 42 245-286 115-157 (178)
474 PHA03372 DNA packaging termina 90.8 1.4 3E-05 46.0 9.1 124 137-286 203-336 (668)
475 COG0513 SrmB Superfamily II DN 90.7 1.2 2.6E-05 46.7 9.1 68 347-418 102-180 (513)
476 COG0466 Lon ATP-dependent Lon 90.7 0.73 1.6E-05 48.8 7.2 64 207-275 383-446 (782)
477 PRK05564 DNA polymerase III su 90.7 1.9 4.2E-05 42.1 10.0 40 244-284 91-130 (313)
478 PRK08840 replicative DNA helic 90.6 3.6 7.9E-05 42.5 12.2 113 137-259 218-342 (464)
479 TIGR00763 lon ATP-dependent pr 90.5 2.5 5.3E-05 46.9 11.6 19 136-154 347-365 (775)
480 PF01637 Arch_ATPase: Archaeal 90.5 0.93 2E-05 41.7 7.3 56 228-287 104-165 (234)
481 cd01131 PilT Pilus retraction 90.4 0.42 9.1E-06 43.3 4.7 39 139-184 4-42 (198)
482 COG3973 Superfamily I DNA and 90.3 3.1 6.6E-05 43.4 10.9 123 279-421 590-716 (747)
483 PF12846 AAA_10: AAA-like doma 90.1 0.48 1E-05 45.7 5.2 42 137-186 2-43 (304)
484 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.1 2.3 4.9E-05 36.2 8.8 31 244-274 86-116 (144)
485 TIGR02858 spore_III_AA stage I 90.1 2.2 4.8E-05 40.6 9.4 25 128-152 100-127 (270)
486 COG5008 PilU Tfp pilus assembl 90.0 0.66 1.4E-05 43.1 5.5 26 134-160 124-150 (375)
487 PRK13850 type IV secretion sys 89.9 0.28 6.1E-06 52.7 3.6 49 137-195 140-188 (670)
488 cd01393 recA_like RecA is a b 89.8 1.6 3.5E-05 40.2 8.3 45 136-182 19-63 (226)
489 KOG0741 AAA+-type ATPase [Post 89.8 1.6 3.5E-05 44.6 8.4 69 104-182 494-574 (744)
490 CHL00176 ftsH cell division pr 89.8 1.9 4.1E-05 46.3 9.7 17 137-153 217-233 (638)
491 COG1132 MdlB ABC-type multidru 89.8 1.4 3E-05 47.0 8.8 41 244-284 481-521 (567)
492 TIGR00665 DnaB replicative DNA 89.7 3 6.5E-05 42.9 10.9 112 137-260 196-319 (434)
493 PRK14701 reverse gyrase; Provi 89.6 1.2 2.7E-05 52.8 8.7 61 343-403 121-187 (1638)
494 TIGR03819 heli_sec_ATPase heli 89.5 0.88 1.9E-05 44.9 6.4 63 111-184 154-217 (340)
495 PHA00350 putative assembly pro 89.3 1.8 3.9E-05 43.4 8.4 17 139-155 4-20 (399)
496 PRK08506 replicative DNA helic 89.3 3.4 7.4E-05 42.9 10.8 112 137-260 193-316 (472)
497 KOG0729 26S proteasome regulat 89.2 3.4 7.4E-05 38.4 9.4 18 137-154 212-229 (435)
498 PF10412 TrwB_AAD_bind: Type I 89.2 0.49 1.1E-05 47.7 4.5 47 134-188 13-59 (386)
499 PLN00020 ribulose bisphosphate 89.1 0.6 1.3E-05 45.9 4.8 19 137-155 149-167 (413)
500 PRK05748 replicative DNA helic 89.1 3.9 8.5E-05 42.2 11.2 112 137-259 204-327 (448)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-87 Score=659.86 Aligned_cols=432 Identities=65% Similarity=1.070 Sum_probs=407.6
Q ss_pred CCCCCccccCcccCccccCCCHHHHHHHHHhcCceeccCC-CCCCcCCcccCC---------------------------
Q 010672 54 DGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRD-VPKPVKSFRDVG--------------------------- 105 (504)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~~~~f~~~~--------------------------- 105 (504)
..++++++++|.+++.+......+.+.+++.+++.+++.. +|.|..+|++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 5788899999999999999999999999999999988765 888887776543
Q ss_pred --CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhc-CCCCCCCCCCEEEEEcccH
Q 010672 106 --FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA-QPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 106 --l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~~~~~vlil~Pt~ 182 (504)
+++.+..+++..||..|||||.++||.++.|+|++..|.||||||++|++|++.++.. +.....+++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 4455666677999999999999999999999999999999999999999999999998 6777788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC
Q 010672 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (504)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~ 262 (504)
|||.|+.+++.+|+....+++.|+|||.+...|..++.++++|+|+||++|.++++....+|+++.|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhc-CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCC-CcccccceeeeeeecChhHHHHHHHHHHHh
Q 010672 263 FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP-DLKANHAIRQHVDIVSESQKYNKLVKLLED 340 (504)
Q Consensus 263 ~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 340 (504)
|++++++|+..+ +++.|++++|||||.+++.++..++.+|+.+.+... ++.++..+.|.+..++...|...|..+|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999 777899999999999999999999999999999866 788999999999999999999999999999
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 010672 341 IM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (504)
Q Consensus 341 ~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~ 418 (504)
+. .++|+||||+|++.|++|++.|+..++++..|||++++.+|+.+++.|++|+..|||||++++||+|||+|++|||
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe
Confidence 86 4569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCCC
Q 010672 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPSS 485 (504)
Q Consensus 419 ~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 485 (504)
||+|.++++|+||+|||||+|++|.+++|++..+...+..+++.++++++.+|+.|.++++....++
T Consensus 416 ydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~ 482 (519)
T KOG0331|consen 416 YDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGG 482 (519)
T ss_pred CCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999988664443
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.4e-83 Score=667.47 Aligned_cols=440 Identities=66% Similarity=1.060 Sum_probs=412.4
Q ss_pred CCCCCCC-CCCCCCCCccccCcccCccccCCCHHHHHHHHHhcCcee-ccCCCCCCcCCcccCCCCHHHHHHHHHcCCCC
Q 010672 44 GAESPRK-LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFE 121 (504)
Q Consensus 44 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~ 121 (504)
+..++.. |+...+++++|+||.+++.+..++.++++++++..++.+ .+..+|+|+.+|++++||++++++|.+.||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~ 152 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTE 152 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCC
Confidence 3344444 998999999999999999999999999999999998886 78999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 201 (504)
|+|+|.++||.+++++|+|++||||||||++|++|++.++..++......++.+|||+||++||.|+.+++.+|+....+
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999998776555666899999999999999999999999998899
Q ss_pred eEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceE
Q 010672 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTL 281 (504)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i 281 (504)
++.+++|+.....+...+..+++|+|+||++|.+++.....++.++++|||||||+|++++|.+++.+++..+++++|++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE
Confidence 99999999998888888999999999999999999998888899999999999999999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHhhc-CCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHH
Q 010672 282 YWSATWPKEVEHLARQYLY-NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQ 359 (504)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~ 359 (504)
++|||||.+++.++..++. +++.+.+..........+.+.+..+....|...|.+++.... ...++||||++++.|+.
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 9999999999999998886 578887777666667778888888888899999999988876 56799999999999999
Q ss_pred HHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCC
Q 010672 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439 (504)
Q Consensus 360 l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g 439 (504)
+++.|+..++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++++|+||+||+||.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCC
Q 010672 440 AKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 483 (504)
Q Consensus 440 ~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 483 (504)
+.|.+++|+++.+...+.+|++.|+++++++|++|.+|+.....
T Consensus 473 ~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~ 516 (545)
T PTZ00110 473 AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSN 516 (545)
T ss_pred CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999976654
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-81 Score=581.26 Aligned_cols=428 Identities=47% Similarity=0.812 Sum_probs=404.5
Q ss_pred CCCCCCccccCcccCccccCCCHHHHHHHHHhc-Cceec------cCCCCCCcCCcccC-CCCHHHHHHHHHcCCCCCcH
Q 010672 53 LDGLTPFEKNFYVESPSVAAMSEREVEEYRQQR-EITVE------GRDVPKPVKSFRDV-GFPDYVMQEISKAGFFEPTP 124 (504)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~------~~~~p~~~~~f~~~-~l~~~~~~~l~~~~~~~~~~ 124 (504)
+.+++|..|+||.+.++++.+++.+++++++++ .|.+. ..++|+|.-+|++. ...+++++++.+.||.+|+|
T Consensus 166 W~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtP 245 (629)
T KOG0336|consen 166 WAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTP 245 (629)
T ss_pred cccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCc
Confidence 456899999999999999999999999999884 44432 34689999999984 67899999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC-CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 010672 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (504)
Q Consensus 125 ~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~ 203 (504)
+|++|||.+|+|.|++.+|.||+|||++||+|.+.|+..++.. ....++.+|+++||++||.|+.-++.++. ..+++.
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ks 324 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKS 324 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcce
Confidence 9999999999999999999999999999999999999887643 34558999999999999999999999875 567899
Q ss_pred EEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEe
Q 010672 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (504)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~ 283 (504)
+|+|||.+...++.++..+.+|+|+||++|.++...+..++..+.|||+||||+|+||+|++++++|+-.++|++|+++.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmT 404 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMT 404 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHH
Q 010672 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 363 (504)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~ 363 (504)
|||||..+..++..|+.+|..+.+++.++.+...+.|.+.+..+.+|...+-.+++......++||||..+..|+.|...
T Consensus 405 SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd 484 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSD 484 (629)
T ss_pred cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccch
Confidence 99999999999999999999999999999999999999988889999988888888888888999999999999999999
Q ss_pred HhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcce
Q 010672 364 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443 (504)
Q Consensus 364 L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~ 443 (504)
|.-.|+.+..+||+..+.+|+.+++.|++|+.+||||||++++|+|+|+++||+|||+|.+++.|+||+||+||+|++|+
T Consensus 485 ~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 485 FCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010672 444 AYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 481 (504)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 481 (504)
+++|++..|...+.+|+++|++++|+||++|..||+..
T Consensus 565 sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAery 602 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERY 602 (629)
T ss_pred eEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999855
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-79 Score=579.91 Aligned_cols=428 Identities=48% Similarity=0.792 Sum_probs=412.3
Q ss_pred CCCCCCCCccccCcccCccccCCCHHHHHHHHHhcCceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHH
Q 010672 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW 130 (504)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i 130 (504)
.....+++|+|+||.++.+++.+...+...++....+.+.+..+|+|+.+|++++|++.++.++.+..|.+|||+|.+++
T Consensus 175 hs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qal 254 (731)
T KOG0339|consen 175 HSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQAL 254 (731)
T ss_pred hhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccc
Confidence 33556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCC
Q 010672 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (504)
Q Consensus 131 ~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~ 210 (504)
|.++++++++.+|.||||||.+|+.|++.|+..++.+.++++|..|||||||+||.|++.++++|++..+++++++|||.
T Consensus 255 ptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGg 334 (731)
T KOG0339|consen 255 PTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGG 334 (731)
T ss_pred ccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHH
Q 010672 211 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKE 290 (504)
Q Consensus 211 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~ 290 (504)
+...|...+..++.||||||++|++++.....++.++++||||||++|.++||+++++.|...+++++|+|+||||++..
T Consensus 335 sk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~k 414 (731)
T KOG0339|consen 335 SKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKK 414 (731)
T ss_pred cHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCC
Q 010672 291 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 369 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~ 369 (504)
++.+++.++.+|+.+..+... .++..+.|.+.++. +..|+..|+..|-.....+++|||+.-+..+++++..|+..++
T Consensus 415 Ie~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 415 IEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred HHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 999999999999999888665 67788888888765 5678888988888888888999999999999999999999999
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEec
Q 010672 370 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 370 ~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
.+..+||+|.+.+|.+++..|+++..+|||+||++++|+|||.+..||+||+-.+++.|+|||||+||+|..|++|++++
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010672 450 AANARFAKELITILEEAGQKVSPELAAMGR 479 (504)
Q Consensus 450 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 479 (504)
+.|..++-.|++.|+.++|.||.+|++|+.
T Consensus 574 eKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 574 EKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred hhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 999999999999999999999999999874
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-74 Score=552.37 Aligned_cols=411 Identities=45% Similarity=0.752 Sum_probs=385.4
Q ss_pred cccCCCHHHHHHHHHhcCceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCc
Q 010672 69 SVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSG 148 (504)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsG 148 (504)
..+.+++.++..|+....|.++|..+|.|+.+|++.+||..+++.+.+.||..|+|+|.+++|..++.+|+|..|.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 45667788888899888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCC----CCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCc
Q 010672 149 KTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 224 (504)
Q Consensus 149 KT~~~~l~~l~~l~~~~~~~----~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 224 (504)
||++|++|++..+...|+.. ...+|.++|++|||+|++|+.++-.+|++.++++++.+.||.+...+-..+..+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 99999999999998877433 34589999999999999999999999999999999999999999998888999999
Q ss_pred EEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCC-------------------------CCc
Q 010672 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-------------------------DRQ 279 (504)
Q Consensus 225 Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~-------------------------~~~ 279 (504)
|+|+||++|++.|++..+-+.++.+||+|||++|.|++|++++.+++..++. -+|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 9999999999999999999999999999999999999999999999998851 169
Q ss_pred eEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHH
Q 010672 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 359 (504)
Q Consensus 280 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~ 359 (504)
+++||||+|+.+..+++.|+.+|+.+.++... .....+.|.+.++.+.+|...|.++|... -..++|||+|+++.|+.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHH
Confidence 99999999999999999999999999999987 67778999999999999999999999887 34689999999999999
Q ss_pred HHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCC
Q 010672 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439 (504)
Q Consensus 360 l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g 439 (504)
|++.|.+.++.+..+||+.++++|+.++..|++|..+||||||++++|||||+|.+|||||++.++++|+|||||+||+|
T Consensus 533 lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 533 LAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAG 612 (673)
T ss_pred HHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccccHHHHHHHHHHHH-HhCCCCCHHHHHhhcCC
Q 010672 440 AKGTAYTFFTAANARFAKELITILE-EAGQKVSPELAAMGRGA 481 (504)
Q Consensus 440 ~~g~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~l~~~~~~~ 481 (504)
+.|++++|+++.|...+.+|...|. ......|++|..-....
T Consensus 613 k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~ 655 (673)
T KOG0333|consen 613 KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQ 655 (673)
T ss_pred cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhhc
Confidence 9999999999999999999999888 45778899987665544
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-75 Score=540.38 Aligned_cols=417 Identities=42% Similarity=0.697 Sum_probs=388.8
Q ss_pred cCcccCccccCCCHHHHHHHHHhcCceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEE
Q 010672 62 NFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIG 141 (504)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~ 141 (504)
..|.+.--+..+|+++.+..++.-.|.+.|+.+|+|+.+|.+++||..+++.+++.|+.+|||+|.+.+|.+++|+|+|.
T Consensus 133 T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIG 212 (610)
T KOG0341|consen 133 TAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIG 212 (610)
T ss_pred hccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceee
Confidence 34445556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCchHHHHHHHHHHHHhcCC---CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC------CCceEEEEECCCCC
Q 010672 142 IAETGSGKTLAYLLPAIVHVNAQP---FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS------SKIKSTCIYGGVPK 212 (504)
Q Consensus 142 ~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~------~~~~~~~~~gg~~~ 212 (504)
+|-||||||++|.+|++...+.+. +...+.+|..||+||+|+||.|.++.+..|... ..++...+.||.+.
T Consensus 213 IAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v 292 (610)
T KOG0341|consen 213 IAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV 292 (610)
T ss_pred EEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH
Confidence 999999999999999988776643 345678999999999999999999988876432 34788889999999
Q ss_pred hHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHH
Q 010672 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~ 292 (504)
..+...+..+.+|+|+||++|.+++.+...+|.-+.||++||||+|.|++|+..++.|+..++..+|+++||||+|..++
T Consensus 293 ~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ 372 (610)
T KOG0341|consen 293 REQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQ 372 (610)
T ss_pred HHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeE
Q 010672 293 HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~ 372 (504)
.+++..+..|+.++++... .++-++.|.+.++..+.|+..+++.|++..+ ++||||..+..++.++++|--.|..++
T Consensus 373 ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~P--pVLIFaEkK~DVD~IhEYLLlKGVEav 449 (610)
T KOG0341|consen 373 NFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTSP--PVLIFAEKKADVDDIHEYLLLKGVEAV 449 (610)
T ss_pred HHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCCC--ceEEEeccccChHHHHHHHHHccceeE
Confidence 9999999999999999987 6677788889999999999999999987544 899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-
Q 010672 373 SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA- 451 (504)
Q Consensus 373 ~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~- 451 (504)
.|||+.++++|...++.|+.|+.+||||||+++.|+|+|++.+|||||+|..++.|+|||||+||.|++|.+.+|++.+
T Consensus 450 aIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 450 AIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred EeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cHHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010672 452 NARFAKELITILEEAGQKVSPELAAMGRGA 481 (504)
Q Consensus 452 ~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 481 (504)
+...+.+|-.+|.+++|++|+.|.+++-..
T Consensus 530 ~esvLlDLK~LL~EakQ~vP~~L~~L~~~~ 559 (610)
T KOG0341|consen 530 EESVLLDLKHLLQEAKQEVPPVLAELAGPM 559 (610)
T ss_pred hHHHHHHHHHHHHHhhccCCHHHHHhCCCc
Confidence 677899999999999999999999998533
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.2e-72 Score=579.63 Aligned_cols=426 Identities=36% Similarity=0.614 Sum_probs=390.1
Q ss_pred CCCCCCCccccCcccCccccC-CCHHHHHHHHHhcCceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHH
Q 010672 52 DLDGLTPFEKNFYVESPSVAA-MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGW 130 (504)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i 130 (504)
+.+.+++++++||..++.+.. ++.++++.+++..+|.+.|...|+|+.+|+++++++.++++|.+.||..|||+|.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~ai 152 (518)
T PLN00206 73 KPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAI 152 (518)
T ss_pred chhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHH
Confidence 456778899999998887765 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCC--CCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEEC
Q 010672 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208 (504)
Q Consensus 131 ~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 208 (504)
|.+++|+|++++||||||||++|++|++.++..... .....++++|||+||++||.|+.+.++.+....++++.+++|
T Consensus 153 p~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~g 232 (518)
T PLN00206 153 PAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVG 232 (518)
T ss_pred HHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 999999999999999999999999999998864321 122357899999999999999999999998888899999999
Q ss_pred CCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc
Q 010672 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (504)
Q Consensus 209 g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~ 288 (504)
|.....+...+..+++|+|+||++|.+++.+....+.++++|||||||+|++++|..++..++..+ +++|++++|||++
T Consensus 233 G~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~ 311 (518)
T PLN00206 233 GDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVS 311 (518)
T ss_pred CcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCC
Confidence 998888888888899999999999999999888889999999999999999999999999999888 5789999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHhh-
Q 010672 289 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM- 366 (504)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~lIf~~s~~~~~~l~~~L~~- 366 (504)
+.++.++..++.++..+.+.... .....+.+.+..+....+...+.+++..... ..++||||+++..|+.+++.|..
T Consensus 312 ~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 312 PEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc
Confidence 99999999999999888877654 4455677777778888888888888876433 35899999999999999999975
Q ss_pred CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEE
Q 010672 367 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446 (504)
Q Consensus 367 ~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~ 446 (504)
.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++++|+||+|||||.|..|.+++
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~ 470 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV 470 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010672 447 FFTAANARFAKELITILEEAGQKVSPELAAMGR 479 (504)
Q Consensus 447 ~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 479 (504)
|+++.+...+.++++.++..++.+|++|.++..
T Consensus 471 f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 471 FVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred EEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 999999999999999999999999999998873
No 8
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-72 Score=545.11 Aligned_cols=407 Identities=43% Similarity=0.717 Sum_probs=376.5
Q ss_pred HHHHHHHhcCce--eccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010672 77 EVEEYRQQREIT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 77 ~~~~~~~~~~i~--~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
...++.+++.+. +.+.++|.++..|++..+++.+..+++..++..|+|+|+.++|.+..|+++++||+||||||.+|+
T Consensus 50 ~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 50 TGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFL 129 (482)
T ss_pred hhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHH
Confidence 444666666655 468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCC-----CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeC
Q 010672 155 LPAIVHVNAQPFLAP-----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIAT 229 (504)
Q Consensus 155 l~~l~~l~~~~~~~~-----~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T 229 (504)
+|++.++........ ...|.+||++||||||.|+++++++|.....+++..+||+.+...+...+.++|+|+|||
T Consensus 130 iPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaT 209 (482)
T KOG0335|consen 130 IPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVAT 209 (482)
T ss_pred HHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEec
Confidence 999999987643221 125999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCcccccccEEEEcCcccccc-CCcHHHHHHHHHhcC----CCCceEEecCCCcHHHHHHHHHhhcC-Ce
Q 010672 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIR----PDRQTLYWSATWPKEVEHLARQYLYN-PY 303 (504)
Q Consensus 230 ~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~-~~~~~~~~~il~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~-~~ 303 (504)
|++|.++++...+.|.++.++||||||+|+| ++|++++++|+.+.. ...|++|||||+|.+++.++..++.+ .+
T Consensus 210 pGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi 289 (482)
T KOG0335|consen 210 PGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYI 289 (482)
T ss_pred CchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccce
Confidence 9999999999999999999999999999999 999999999999875 37899999999999999999999987 77
Q ss_pred EEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc---CCC-----eEEEEeCCcccHHHHHHHHhhCCCCeEEec
Q 010672 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGS-----RILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (504)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih 375 (504)
.+.+.... .....+.|.+..+.+.+|...|+++|.... ... +++|||++++.|+.++..|...++++..+|
T Consensus 290 ~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIh 368 (482)
T KOG0335|consen 290 FLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIH 368 (482)
T ss_pred EEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeec
Confidence 77777766 678889999999999999999999998654 233 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHH
Q 010672 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (504)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~ 455 (504)
|+.++.+|.+.++.|++|.+++||||++++||+|||+|++||+||+|.+..+|+||||||||.|+.|.++.|++..+...
T Consensus 369 g~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i 448 (482)
T KOG0335|consen 369 GDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNI 448 (482)
T ss_pred chhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHhhcCCCCC
Q 010672 456 AKELITILEEAGQKVSPELAAMGRGAPPS 484 (504)
Q Consensus 456 ~~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 484 (504)
++.|.++|.+++|++|+||.+|++....+
T Consensus 449 ~~~L~~~l~ea~q~vP~wl~~~~~~~~~~ 477 (482)
T KOG0335|consen 449 AKALVEILTEANQEVPQWLSELSRERELG 477 (482)
T ss_pred HHHHHHHHHHhcccCcHHHHhhhhhcccc
Confidence 99999999999999999999987765443
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-72 Score=519.96 Aligned_cols=367 Identities=39% Similarity=0.595 Sum_probs=348.1
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~v 175 (504)
....+|.++++.+.++++++..+|..||++|++++|.++.|+|+|+.|+||||||.+|++|++++++.++. .+++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceE
Confidence 34578999999999999999999999999999999999999999999999999999999999999998653 4889
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHH-ccCcccccccEEEEcC
Q 010672 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDE 254 (504)
Q Consensus 176 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lV~DE 254 (504)
+||+||||||.|+.+.+..++...++++.++.||.+...+...+.+.++|+||||++|.+++. .+.+++..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999998 5778999999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
||+++++.|.+.+.+|+..++..+|++++|||+++.+.++....+.+|..+...... ..-..+.|.+..++...|...|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999999998877665 5556788999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 010672 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 414 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~ 414 (504)
+.+|++... ..+||||++...++.++-.|+..|+.+..+||.|++..|.-+++.|++|...||||||+++||+|+|.|+
T Consensus 292 V~ll~e~~g-~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 292 VYLLNELAG-NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHHHhhcC-CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 999997644 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCC
Q 010672 415 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 469 (504)
Q Consensus 415 ~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 469 (504)
+|||||.|.+..+|+||+||++|+|..|.+++|++..|...+..|...+.....+
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999988888887655
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-71 Score=569.24 Aligned_cols=428 Identities=47% Similarity=0.802 Sum_probs=410.4
Q ss_pred CCCCCCCCccccCcccCccccCCCHHHHHHHHHhcC-ceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHH
Q 010672 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQG 129 (504)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~ 129 (504)
......++|.++||.+.+++..++..++..|+.... |.+++...|+|+.+|.+.++...++..+++.+|.+|+|||.+|
T Consensus 316 ~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qA 395 (997)
T KOG0334|consen 316 HSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQA 395 (997)
T ss_pred cccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhh
Confidence 446678999999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC
Q 010672 130 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (504)
Q Consensus 130 i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg 209 (504)
||+++.|+|+|.+|.||||||++|++|++.|+..++....+++|.+||++|||+|+.|+.+++.+|+..++++++++||+
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg 475 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGG 475 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHHHHhcCCcEEEeChHHHHHHHHcc---CcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.....++.++.+++.|+||||+++++++... ..++.++.+||+||||+|.+++|.+++..|+..+++++|++++|||
T Consensus 476 ~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 476 SGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred ccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhh
Confidence 9999999999999999999999999988654 3467777899999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh
Q 010672 287 WPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR 365 (504)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~ 365 (504)
+|..+..+++..+..|+.++++... ..+..+.|.+.++. +.+|+..|+++|.......++||||.....|+.+.+.|.
T Consensus 556 fpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 556 FPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred hhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 9999999999999999998888544 78888999999988 999999999999999889999999999999999999999
Q ss_pred hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEE
Q 010672 366 MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 445 (504)
Q Consensus 366 ~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~ 445 (504)
+.++++..+||+.++.+|..++++|+++.+.+||||+++++|+|++.+.+|||||+|...++|+||+||+||+|++|.|+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhc
Q 010672 446 TFFTAANARFAKELITILEEAGQKVSPELAAMGR 479 (504)
Q Consensus 446 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~ 479 (504)
+|+++.+..++.+|.+.+....+.+|..|..|..
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVPKLLQALSE 748 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCchHHHHHHH
Confidence 9999999999999999999999999999998874
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-68 Score=546.63 Aligned_cols=373 Identities=44% Similarity=0.704 Sum_probs=341.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.+|+++++++.+++++.+.||..|||+|.++||.++.|+|++++|+||||||++|++|++.++.... .....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7799999999999999999999999999999999999999999999999999999999999977431 111112 9999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
+||||||.|+.+.+..++... ++++.+++||.+...+...+..+++|+|+||++|++++....+++..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999988999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCc-ccccceeeeeeecChhH-HHHHHH
Q 010672 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQ-KYNKLV 335 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~ 335 (504)
|++++|...+..|+..+++++|+++||||+|..+..++..++.+|..+.+..... .....+.|.+..+...+ |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888874332 36778889988888766 999999
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~ 415 (504)
.++..... .++||||+|++.|+.++..|...|+.+..|||++++++|..+++.|++|+.+||||||+++||||||++++
T Consensus 266 ~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 98887544 37999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHh---CCCCCHHHH
Q 010672 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA---GQKVSPELA 475 (504)
Q Consensus 416 VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~---~~~~~~~l~ 475 (504)
|||||+|.++++|+||+||+||+|..|.+++|+++. +...+..+.+.+... ...+|....
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 999999999999999999999999999999999986 888888888887665 335554433
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.3e-66 Score=530.23 Aligned_cols=365 Identities=38% Similarity=0.683 Sum_probs=330.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC-CCCCCEEEEE
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVL 178 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~vlil 178 (504)
+|+++++++++++++.+.||.+|||+|.++|+.+++++|+|++||||||||++|++|++..+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999987643211 1234689999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~ 258 (504)
+||++||.|+.+.+..+....++.+..++|+.+...+...+..+++|+|+||++|.+++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888899999999999988888888888999999999999999888888999999999999999
Q ss_pred ccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHH
Q 010672 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (504)
++++|...++.++..++...|++++|||+++++..++..++.+|..+.+.... .....+.+.+..++...+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877765443 34455777777777777777666666
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 010672 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (504)
Q Consensus 339 ~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~ 418 (504)
... ...++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 241 ~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred HcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 543 3458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010672 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (504)
Q Consensus 419 ~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (504)
|++|.++++|+||+||+||.|..|.+++|++..+...++.+.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999988888876544
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-67 Score=466.95 Aligned_cols=377 Identities=34% Similarity=0.599 Sum_probs=351.0
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010672 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (504)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 173 (504)
.-+++.+|+++++.+++++.+...||.+|..+|+.|++.+++|+|++++|..|+|||.+|.+.+++.+.-. ....
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~t 96 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRET 96 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----ccee
Confidence 34567899999999999999999999999999999999999999999999999999999988888765442 2246
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEc
Q 010672 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~D 253 (504)
.+|||+||||||.|+.+.+..++...++.+..+.||.+....+..+..+++++.+||+++.+++.+..+.-..+++||+|
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhH-HHH
Q 010672 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ-KYN 332 (504)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 332 (504)
|||.|++.+|..++-.++..++|+.|++++|||+|.++.+....|+.+|+.+.+...++ ..+.+.|++..++.++ |.+
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999988874 4555777776666555 999
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~ 412 (504)
.|+++...+.- .+++|||+|++.+++|.+.+++.++.+.++||+|.+++|++++++|++|+.+||++||+.++|+|+|.
T Consensus 256 tLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~q 334 (400)
T KOG0328|consen 256 TLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQ 334 (400)
T ss_pred HHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcce
Confidence 99998877644 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010672 413 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 477 (504)
Q Consensus 413 v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 477 (504)
+++|||||+|.+.+.|+|||||.||.|++|.++-|+..+|.+.++++.+.+.-+..++|..+.++
T Consensus 335 VslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 335 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred eEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998876554
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-67 Score=498.37 Aligned_cols=362 Identities=36% Similarity=0.546 Sum_probs=333.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
..+|.+++|+..+++++...||..|||||..+||.++-|+|++.||.||||||.+|++|+|..|+..|.. ....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4588999999999999999999999999999999999999999999999999999999999999987643 34678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-cCcccccccEEEEcCcc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lV~DEah 256 (504)
|+|||+|+.|++...++++....+.+....||.+...|...++..+||+|+||++|++++.+ ..+++.++.+||+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 56789999999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeee-ec--ChhHHHHH
Q 010672 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IV--SESQKYNK 333 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~k~~~ 333 (504)
+|++.+|..++..|+..++.++|+++||||+...+.+++...+..|+.+.+..... ....+.|-+. +. .+..+...
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~-~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD-TAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc-cchhhhHHHheeccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999988774 4444444443 32 23445566
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v 413 (504)
+..++.... ...+|||+.|++.|+.+.-.|--.|+.+.-+||.+++.+|-..++.|++.+++||||||++++|+||++|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 666666655 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHH
Q 010672 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 463 (504)
Q Consensus 414 ~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 463 (504)
.+||||++|.+++.|+||+||+.|+|+.|.+++|+.+.+.++++.+++.-
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999988874
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.4e-64 Score=510.09 Aligned_cols=367 Identities=38% Similarity=0.582 Sum_probs=330.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCCEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIV 175 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~--~~~~~~v 175 (504)
-.+|+++++++.+++++...||..|+|+|.++||.+++|+|++++||||||||++|++|++..+...+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36799999999999999999999999999999999999999999999999999999999999987654321 2346889
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCc
Q 010672 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (504)
Q Consensus 176 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEa 255 (504)
|||+||++||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|.+++......+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999998888888888888999999999999999888888999999999999
Q ss_pred cccccCCcHHHHHHHHHhcCC--CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHH
Q 010672 256 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (504)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (504)
|++++++|...+..++..++. ..+.+++|||++..+..++..++.+|..+.+.... .....+.+.+.......|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHH
Confidence 999999999999999988863 56789999999999999999999999887766544 334556666666777788888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v 413 (504)
+..++... ...++||||+++..|+.+++.|+..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88887654 34689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010672 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (504)
Q Consensus 414 ~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (504)
++||+||+|.++++|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999888888876666544
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-63 Score=520.27 Aligned_cols=366 Identities=39% Similarity=0.633 Sum_probs=328.9
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCCEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPIVL 176 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~--~~~~~~vl 176 (504)
.+|+++++++.++++|.+.||..|||+|.++||.+++++|++++||||||||++|++|++.++...+... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999887543211 22357899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-CcccccccEEEEcCc
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 255 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lV~DEa 255 (504)
||+||++|+.|+++.+.+|+...++++..++|+.....+...+..+++|+|+||++|.+++... ...+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999888888878888999999999999998764 467889999999999
Q ss_pred cccccCCcHHHHHHHHHhcCC--CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHH
Q 010672 256 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (504)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (504)
|+|++++|...+..++..++. ..|+++||||++..+..++..++.+|..+.+.... .....+.+.+.......|...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHH
Confidence 999999999999999998875 78999999999999999999999888877665544 334556777777778888888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v 413 (504)
+..++... ...++||||++++.|+.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 248 L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 88877653 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010672 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (504)
Q Consensus 414 ~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (504)
++||+||+|.++++|+||+||+||.|..|.|++|+++.+...+.++.+.+...
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999998888888887766543
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-64 Score=481.70 Aligned_cols=364 Identities=35% Similarity=0.563 Sum_probs=333.1
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
....|++..+++..+++++.+||.++|++|+.+++.++.|+|+++.|.||+|||++|++|++..+...+...+ .+..+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 3456788899999999999999999999999999999999999999999999999999999999988765443 577899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc-ccccccEEEEcC
Q 010672 177 VLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDE 254 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lV~DE 254 (504)
||||||+||.|++.+++++.... .+.+..+.||.........+.++++|+|+||++|.+++++... ...+++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999987776 8999999999999999999999999999999999999998543 456678999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcC-CeEEEEcCC-CcccccceeeeeeecChhHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSP-DLKANHAIRQHVDIVSESQKYN 332 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~ 332 (504)
||++++++|+..++.|+..++..+|+++||||.+..++++++..+.. +..+..... +......+.|.+.+.+...++.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999988765 665554433 3345567888888888888899
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~ 412 (504)
.+..+|++.....++||||+|...+..+++.|+...++|..|||.+++..|..+..+|++.+.-||||||+++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 99999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010672 413 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 413 v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 461 (504)
|++||+||+|.++++|+||+||+||.|..|.+++|+.+.+..+++.|-+
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887766553
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-64 Score=457.39 Aligned_cols=366 Identities=35% Similarity=0.512 Sum_probs=335.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
...|+.+++++|+.+.+++.++.+|||+|..|||.++.|+|+|.+|.||||||++|.+|+++.+.+.| .+-.++|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999998754 4778999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc----CcccccccEEEEc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLD 253 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lV~D 253 (504)
++|||+||.|+.+.|...++..++++.+++||++.-.+...+...++++|+||+++.+++.+. ...+.++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999998889999999999999999999998875 2357889999999
Q ss_pred CccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEE-cCCCcccccceeeeeeecChhHHHH
Q 010672 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII-GSPDLKANHAIRQHVDIVSESQKYN 332 (504)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (504)
|||++++..|...++.+.+.+++.+|+++||||+.+.+.++.......++.... ..+.......+.|.+..++...|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 999999999999999999999999999999999998888776665554332222 2245567778889999999999999
Q ss_pred HHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 010672 333 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (504)
Q Consensus 333 ~l~~~l~~~~~--~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi 410 (504)
.++.+|....+ .+.++||+++..+|+.|+..|+..++.+..+|+.|++.+|...+.+|+++..+||||||++++|+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999988765 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010672 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (504)
Q Consensus 411 ~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (504)
|.|..|||||.|.+|.+|+||+||+.|+|+.|.++.|+++.|.+.+..+.+.+..+..
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999988888887766544
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-62 Score=504.69 Aligned_cols=359 Identities=39% Similarity=0.620 Sum_probs=329.3
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.+|+++++++.+++++.+.||.+|+|+|.+||+.+++++|++++||||||||++|++|++.++... ...+++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999988542 125679999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
+||++||.|+.++++.+.... ++++..++||.+...+...+..+++|+|+||++|.+++.+....+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999887643 6889999999999889888889999999999999999998888899999999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHH
Q 010672 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (504)
|++++|...+..++..+++..|++++|||+|+.+..++..++.+|..+.+.... ....+.+.+..+....|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776543 334477777778888888888888
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE
Q 010672 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 417 (504)
Q Consensus 338 l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI 417 (504)
+.... ..++||||++++.|+.+++.|...++.+..+||++++.+|+.+++.|++|+.+|||||+++++|||+|++++||
T Consensus 237 l~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHHQ-PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 87543 45899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010672 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 418 ~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
+||+|.++++|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988887777766644
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-63 Score=475.55 Aligned_cols=357 Identities=33% Similarity=0.540 Sum_probs=330.2
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEE
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~v 175 (504)
..+..|.++++++..++.|+..+|..+|.+|+++||.+|+|+|+|..|.||||||++|++|+|.++....+ ...+|--+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-s~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-SPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC-CCCCCcee
Confidence 34578999999999999999999999999999999999999999999999999999999999999987654 34557779
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-CcccccccEEEEcC
Q 010672 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDE 254 (504)
Q Consensus 176 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lV~DE 254 (504)
||++||||||.|+++.+.+.+....+....+.||.....+...+ +.++|+||||++|+.++... .++.+++.+||+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999876665554 45899999999999998754 56778999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCC-cccccceeeeeeecChhHHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD-LKANHAIRQHVDIVSESQKYNK 333 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 333 (504)
||+|++|||..++..|++.+++.+|+++||||....+.++++..+.+|..+.+.... ...+..+.|.+.+++..+|+..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999999887443 5778889999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~ 411 (504)
|..+++.+.. .++|||+.|.+++..+++.+++. |++...+||.|++..|..++.+|...+.-||+|||+++||+|+|
T Consensus 304 L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 304 LWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999998865 58999999999999999999864 89999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHH
Q 010672 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (504)
Q Consensus 412 ~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~ 455 (504)
.|++||++|+|.++++|+||+||++|....|.+++++++.+...
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 99999999999999999999999999999999999999998443
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.1e-62 Score=511.94 Aligned_cols=357 Identities=39% Similarity=0.642 Sum_probs=324.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
..+|++++|++.++++|.+.||.+|+|+|.++|+.+++++|+|++||||||||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999887542 23678999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 178 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
|+||++||.|+.+.+.++.... ++.+..++||.....+...+..+++|+|+||++|.+++.+....++++.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999886554 689999999998888888888899999999999999999888889999999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHH
Q 010672 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (504)
.|++++|...+..++..++...|+++||||+|..+..++..++.+|..+.+.... .....+.+.+..+....|...+..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888776554 344556777777777788888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~V 416 (504)
++... ...++||||+|+..++.+++.|...++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|++++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88654 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010672 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 417 I~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 461 (504)
|+||+|.++++|+||+|||||.|+.|.+++|+++.+...++.+.+
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 999999999999999999999999999999999876655555443
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-62 Score=461.67 Aligned_cols=356 Identities=34% Similarity=0.549 Sum_probs=317.9
Q ss_pred CCcccCCC--CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 99 KSFRDVGF--PDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 99 ~~f~~~~l--~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
.+|++++. ++++++++...||...||+|..+||.++.++|+++.|+||||||++|++|++..+..+....+....-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 45777654 4999999999999999999999999999999999999999999999999999999654322222234689
Q ss_pred EEcccHHHHHHHHHHHHHhcCC-CCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccC--cccccccEEEE
Q 010672 177 VLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVL 252 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lV~ 252 (504)
|++||||||.|+.+.+..|... .++.+.++.||......+..+. .++.|+|+||++|.+++.+.. +++..+.+||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988765 6788999999988887777664 568899999999999998754 44559999999
Q ss_pred cCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCc-ccccceeeeeeecChhHHH
Q 010672 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQKY 331 (504)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 331 (504)
||||+++++||...+..|++.+++.+++-+||||...++.++++..+.||+.+.+..... ..+..+...+..+....|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999998877653 2555677788889999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010672 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 409 (504)
Q Consensus 332 ~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvd 409 (504)
..++++|... ..+++|||++|-..++.....|... ...+..+||.|++..|..++..|.+-...+|+|||+++||+|
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999999885 4468999999999999999888764 678899999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHH
Q 010672 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (504)
Q Consensus 410 i~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~ 455 (504)
||++++||+||+|.+++.|+||+|||+|+|+.|.+++|+.+.+..|
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 9999999999999999999999999999999999999999976555
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-64 Score=453.27 Aligned_cols=369 Identities=30% Similarity=0.527 Sum_probs=346.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
..|+++.+..+++..+.+.||..|.|+|+++||.++.|+|+++.|..|+|||.+|.+|+|..+... .+.-..+|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 568889999999999999999999999999999999999999999999999999999999987643 235669999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~ 258 (504)
+||||||.|+...+.++++..++.+.+..||++....+..+....+++|+||++++++..++...++++.++|+||||.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHH
Q 010672 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (504)
++..|.+.++.++..+++++|++++|||+|-.+..+...++.+|+.+.+... -....+.|++.++.+..|+..|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999887653 45677899999999999999988888
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 010672 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (504)
Q Consensus 339 ~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~ 418 (504)
..+.- .+.||||++...++.+|..+.+.|+.|..+|+.|.++.|..++.+|++|.++.|||||.+.||||++++++|||
T Consensus 318 skLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 77644 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 010672 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 475 (504)
Q Consensus 419 ~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 475 (504)
||+|.++++|.|||||.||.|.-|.++.+++-.|...+..+...|...-..+|+.++
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999999999999999999999999999988888888888776543
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.7e-61 Score=490.25 Aligned_cols=364 Identities=36% Similarity=0.590 Sum_probs=325.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
+|+++++++.+++.+.+.||.+|+++|.++|+.++.++|++++||||+|||++|++|++.++...+.. ....+++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999998764321 22357899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
||++||.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999889999999999998888877778889999999999999999888889999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCceEEecCCCcH-HHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC-hhHHHHHHHHH
Q 010672 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKL 337 (504)
Q Consensus 260 ~~~~~~~~~~il~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 337 (504)
+++|...+..+...++...|+++||||++. .+..++..++.+|..+...... .....+.+.+...+ ...+...+..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999888999999999985 5788888888888887765543 33444556655554 35666666666
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE
Q 010672 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 417 (504)
Q Consensus 338 l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI 417 (504)
+.. ....++||||+++..|+.++..|+..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred Hhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 654 2446899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010672 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (504)
Q Consensus 418 ~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (504)
+||+|.+.+.|+||+||+||.|..|.+++|++..|...+..+.+.+.+.
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998888888777553
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-59 Score=484.98 Aligned_cols=378 Identities=37% Similarity=0.559 Sum_probs=333.2
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC--CCCCCE
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPI 174 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~--~~~~~~ 174 (504)
....|.++++++.++++|.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346788999999999999999999999999999999999999999999999999999999999987653211 112578
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEc
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~D 253 (504)
+|||+||++|+.|+.+.+..+....++.+..++||.....+...+. ..++|+|+||++|.+++.+....++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999998888899999999988777776664 468999999999999998888889999999999
Q ss_pred CccccccCCcHHHHHHHHHhcCC--CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHH
Q 010672 254 EADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 331 (504)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (504)
|||++++++|...+..++..+.. +.|++++|||++.++..++..++.+|..+.+.... .....+.+.+..+...++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 99999999999999999988753 67999999999999999999999999887765544 3344566777777777888
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 010672 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (504)
Q Consensus 332 ~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~ 411 (504)
..+..++... ...++||||++++.|+.+++.|...++.+..+||++++++|.++++.|++|+++|||||+++++|||+|
T Consensus 324 ~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 324 KLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 8887777653 345899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC--CCCCHHHHH
Q 010672 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG--QKVSPELAA 476 (504)
Q Consensus 412 ~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~l~~ 476 (504)
++++||+|++|.++.+|+||+||+||.|+.|.+++|++++|..++..+.+.+.... ...|.+|..
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999999999999999888888888776553 334555544
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-60 Score=454.43 Aligned_cols=366 Identities=34% Similarity=0.550 Sum_probs=320.0
Q ss_pred CcCCcccCCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCC-CCCCCCCCE
Q 010672 97 PVKSFRDVGFPDYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPI 174 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~~~ 174 (504)
.-..|..+++++.+.+.|+ .+++..||.+|+++||.+++|+|+++.++||||||++|++|+++.+.... ...+.+|+.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 3456889999999999997 57999999999999999999999999999999999999999999998754 345677999
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-cCcccccccEEEE
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lV~ 252 (504)
+||++||||||.|+++.+.++.+.+ .|....+.||.....+...++++++|+|+||++|+|++.+ ..+.++++.+|||
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 9999999999999999999987664 4556778999999999999999999999999999999987 4567889999999
Q ss_pred cCccccccCCcHHHHHHHHHhcC-------------CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCC---------
Q 010672 253 DEADRMLDMGFEPQIKKILSQIR-------------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP--------- 310 (504)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--------- 310 (504)
||+|++++.||+..+..|+..+. +..|.+++|||+.+.+.+++...+.||..+..+..
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999988762 23688999999999999999999999988772111
Q ss_pred ---------------CcccccceeeeeeecChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhhC-----
Q 010672 311 ---------------DLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD----- 367 (504)
Q Consensus 311 ---------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~lIf~~s~~~~~~l~~~L~~~----- 367 (504)
....+..+.|.+.+++..-++..|..+|.... ...++|||+.+.+.++.-+..|.+.
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 12445567788888888888888888877653 3348999999999998888887541
Q ss_pred -----------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHH
Q 010672 368 -----------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH 430 (504)
Q Consensus 368 -----------------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~Q 430 (504)
+.++.-+||+|++++|..+++.|...+..||+|||+++||+|+|+|.+||.||+|.++++|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 245678999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010672 431 RIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (504)
Q Consensus 431 riGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (504)
|+||+.|+|.+|.+++|+.+.+..++..|...
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999876655443
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-60 Score=442.17 Aligned_cols=368 Identities=31% Similarity=0.491 Sum_probs=335.5
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC-CCCCCCEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 177 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~vli 177 (504)
.+|++++|++.+++++.+.||.+||-+|+.|||.++.|+|+++.|.||||||.+|++|+++.++..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999999876554 3455899999
Q ss_pred EcccHHHHHHHHHHHHHhcCCC--CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccC-cccccccEEEEcC
Q 010672 178 LAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 254 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~-~~l~~~~~lV~DE 254 (504)
|+||+|||.|++..+.++...+ .+++.-+...++.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999988764433 356666666666666666777889999999999999998876 6788899999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
||.++..||+..+.++.+.+++..|.++||||+.+++..+-..++.+|+.+.+...++.....+.|++..+.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc-----------
Q 010672 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV----------- 403 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~----------- 403 (504)
+.+++...-.+++|||+|+.+.|..|.-.|++.|++..+++|.|+...|..+++.|+.|-++++||||.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999887666789999999999999999999999999999999999999999999999999999999991
Q ss_pred ------------------------cccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHH
Q 010672 404 ------------------------AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 459 (504)
Q Consensus 404 ------------------------~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l 459 (504)
++||||+.+|..|||||+|.+...|+||+||++|.+++|.+++|+.+.+......+
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 36899999999999999999999999999999999999999999999987766666
Q ss_pred HHHHHHh
Q 010672 460 ITILEEA 466 (504)
Q Consensus 460 ~~~l~~~ 466 (504)
...+...
T Consensus 419 e~~~~d~ 425 (569)
T KOG0346|consen 419 ESILKDE 425 (569)
T ss_pred HHHHhhH
Confidence 6666553
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.5e-58 Score=466.07 Aligned_cols=369 Identities=33% Similarity=0.588 Sum_probs=324.9
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
...+|+++++++.+.+++.+.+|..|+|+|.++|+.+++++|++++||||||||++|++|++..+... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 2367899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
||+||++|+.|+.+.+..++....+.+..+.|+.....+...+..+++|+|+||++|.+++.+....+.++++||+||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 99999999999999999998888888888899988777777778889999999999999998877889999999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecCh-hHHHHHHH
Q 010672 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYNKLV 335 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~ 335 (504)
++.+.+|...+..++..++++.|++++|||+|+.+..+...++.++..+.+..... ....+.+.+..... ..+...+.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888776655442 23344454444443 44556666
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~ 415 (504)
+++... ...++||||++++.++.+++.|+..++.+..+||++++.+|..++++|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 665543 3468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCH
Q 010672 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 416 VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 472 (504)
||++++|.+..+|+||+||+||.|+.|.|++|+++.+...+..+.+.+....++.++
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 999999999999999999999999999999999999988888887777655555544
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-56 Score=437.73 Aligned_cols=397 Identities=34% Similarity=0.512 Sum_probs=348.7
Q ss_pred HHhcCceeccCCCCCCcCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHH
Q 010672 82 RQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157 (504)
Q Consensus 82 ~~~~~i~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~ 157 (504)
++.+.+.+.|..+|+|+.+|.++ .+...+++++...+|..|+|+|.+|+|.+++.+++++|||||||||++|.+|+
T Consensus 115 Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pi 194 (593)
T KOG0344|consen 115 RKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPI 194 (593)
T ss_pred hhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHH
Confidence 44457778899999999999984 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc--CCCCceEEEEECCCCChH-hHHHHhcCCcEEEeChHHHH
Q 010672 158 IVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG--ASSKIKSTCIYGGVPKGP-QVRDLQKGVEIVIATPGRLI 234 (504)
Q Consensus 158 l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~gg~~~~~-~~~~~~~~~~Iiv~T~~~l~ 234 (504)
+.++..........+-+++|+.||++||.|++.++.++. .....+...+........ ........++|+|.||-++.
T Consensus 195 l~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~ 274 (593)
T KOG0344|consen 195 LQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIV 274 (593)
T ss_pred HHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHH
Confidence 999987654444567889999999999999999999998 555555444333322111 11222345799999999998
Q ss_pred HHHHccC--cccccccEEEEcCccccccC-CcHHHHHHHHHhc-CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCC
Q 010672 235 DMLESHN--TNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 310 (504)
Q Consensus 235 ~~l~~~~--~~l~~~~~lV~DEah~~~~~-~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 310 (504)
..+.... ..++.+.++|+||+|++.+. .|..++..|+..+ .++..+-+||||++..+++++.....++..+.++..
T Consensus 275 ~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~ 354 (593)
T KOG0344|consen 275 GLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR 354 (593)
T ss_pred HHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc
Confidence 8887765 67899999999999999998 8999999998876 477888899999999999999999999999999987
Q ss_pred CcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHH-hhCCCCeEEecCCCCHHHHHHHHHH
Q 010672 311 DLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWVLSE 389 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L-~~~~~~~~~ih~~~~~~~r~~~~~~ 389 (504)
+.......+..+.+..+..|.-.+.+++....+ .++|||+++.+.|.+|...| ...++.+.++||..++.+|++++++
T Consensus 355 ~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 355 NSANETVDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhHhhhhhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHH
Confidence 754333334456667788999999999987654 48999999999999999999 6778999999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCC
Q 010672 390 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQK 469 (504)
Q Consensus 390 f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 469 (504)
|+.|++.|||||+++++|+|+.+++.||+||.|.+...|+|||||+||+|+.|.+++||+..+..+++.+.+.+++.+-+
T Consensus 434 FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~e 513 (593)
T KOG0344|consen 434 FRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCE 513 (593)
T ss_pred HhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhc
Q 010672 470 VSPELAAMGR 479 (504)
Q Consensus 470 ~~~~l~~~~~ 479 (504)
+|++++.|..
T Consensus 514 vpe~~m~~~k 523 (593)
T KOG0344|consen 514 VPEKIMGIKK 523 (593)
T ss_pred chHHHHhhhh
Confidence 9999999975
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-56 Score=409.02 Aligned_cols=371 Identities=29% Similarity=0.491 Sum_probs=320.2
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 173 (504)
-...+|+++.|.+++++.+..++|.+|+.+|..|+|.++.. +++|.++..|+|||.+|.+.+|.++... ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 35788999999999999999999999999999999999975 6899999999999999999999887642 2367
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCC--ChHhHHHHhcCCcEEEeChHHHHHHHHc-cCcccccccEE
Q 010672 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP--KGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYL 250 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~--~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~l 250 (504)
.+++|+|||+||.|+.+.+.+.++..++......-+.. ....+ ..+|+|+||+.+.+++.. ....+..+.++
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i-----~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKL-----TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcc-----hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 79999999999999999999999988777766555541 11111 247999999999999887 67788999999
Q ss_pred EEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhH
Q 010672 251 VLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ 329 (504)
Q Consensus 251 V~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (504)
|+||||.|++. ||..+-..|...++++.|+++||||+...+..++.....++..+.+...++.....-+.++.+..+.+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999999874 58888888988998999999999999999999999999999999999988666554445555667788
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010672 330 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 409 (504)
Q Consensus 330 k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvd 409 (504)
|++.|.++.... .-++.||||.|++.|.+++..|+..|+.+..+||+|...+|..++++|+.|..+|||+|++++||||
T Consensus 317 K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 317 KYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred HHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 999999865543 3457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC------CHhHHHHHhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHh-CCCCCHHHHHh
Q 010672 410 VKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEA-GQKVSPELAAM 477 (504)
Q Consensus 410 i~~v~~VI~~~~p~------s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~-~~~~~~~l~~~ 477 (504)
++.|++|||||+|. ++++|+|||||+||.|+.|.++-|+... ....+..+.++.... ....|..+.++
T Consensus 396 v~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99999999999995 7899999999999999999999998866 566777777777444 34445555544
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-57 Score=436.00 Aligned_cols=371 Identities=34% Similarity=0.487 Sum_probs=304.8
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCC-----
Q 010672 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL----- 167 (504)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~----- 167 (504)
.+..+..|.++.+|..++.+|..+||..||+||..++|.+..+ .|++..|.||||||++|-+|++..+......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3455778999999999999999999999999999999999999 7999999999999999999999955442211
Q ss_pred ---CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc--
Q 010672 168 ---APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-- 242 (504)
Q Consensus 168 ---~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-- 242 (504)
.....+..||++||||||.|+.+.+...+...++++..++||.....|.+.+...++|+|+||++|..++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112234599999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred -ccccccEEEEcCccccccCCcHHHHHHHHHhcC-----CCCceEEecCCCcHH---------------------HHHHH
Q 010672 243 -NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPKE---------------------VEHLA 295 (504)
Q Consensus 243 -~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~-----~~~~~i~~SAT~~~~---------------------~~~~~ 295 (504)
++.++.+||+||+|+|++.|+...+.+++..+. ..+|++.||||+.-. ++.+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 578889999999999999998888888887764 568999999997532 22222
Q ss_pred HHh--hcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010672 296 RQY--LYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (504)
Q Consensus 296 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ 373 (504)
... ...|..+.+.... .....+......++..+|.-.|+.+|.. -.+++|||||++..+..|+-+|+..+++...
T Consensus 416 k~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 221 1223222222211 1111222222222333333333333332 2368999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 374 ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+|+.|.+.+|-..+++|++....||||||+++||+|||+|+|||||-.|.+.+.|+||-||++|++..|..++|+.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 010672 454 RFAKELITILEEAG 467 (504)
Q Consensus 454 ~~~~~l~~~l~~~~ 467 (504)
..+..|+.-|+...
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99998888887653
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-55 Score=406.55 Aligned_cols=370 Identities=34% Similarity=0.583 Sum_probs=338.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
+.+|++++|++.+++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++++.. ......+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999988743 223566999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH-hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
++||++||.|+.+....++...+.++..+.||.....+...+ ...++|+++||+++.+++....+....++++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999999998887555444 4458999999999999999888888889999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHH
Q 010672 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (504)
.|+..+|..++..|...++++.|++++|||.|.++.++.+.++.+|+.+.....++. ...+.|.+..+..++|+..+.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999888854 5667777777777779999999
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~V 416 (504)
+.+ .-...+|||++++.++.+...|...++.+..+|++|.+.+|+.++..|+.|..+|||+|+.+++|+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 888 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHH
Q 010672 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAA 476 (504)
Q Consensus 417 I~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 476 (504)
|+|+.|.+.++|+||+||+||+|.+|.++.|+++.+.+.++++.++..-.-.++|....+
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 999999999999999999999999999999999999999999998877666666665443
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-56 Score=413.18 Aligned_cols=363 Identities=35% Similarity=0.569 Sum_probs=341.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
.-.|+.++|+..+++++.+.||..|+|+|++.+|.+|.+++++..+-||||||.+|++|++.++.... ..+.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999988742 34778999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
++||++|+.|..+..+.++...+++..+++||....++...+..++|||++||+++.++.......|+.+.||||||+|+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887766678899999999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHH
Q 010672 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (504)
+..+||.+++.+++..++.+.|+++||||+|..+-++++.-+.+|..+.+.-+. .....+...+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999866554 6677777788888999999999999
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE
Q 010672 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI 417 (504)
Q Consensus 338 l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI 417 (504)
+.....+++++|||.|+.+++.+...|+..|+.+..+++.+++..|..-+.+|+.++..+||.|+++++|+|||-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 99887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010672 418 NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 418 ~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
+||+|.+...|+||+||+.|+|++|.+|.++.+.+..++.+|-..+..
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 999999999999999999999999999999999998888887766543
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.4e-53 Score=448.88 Aligned_cols=341 Identities=20% Similarity=0.284 Sum_probs=270.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
.+++.+.+.|.+.||.+|+++|.++|+.+++|+|+++++|||||||++|++|++..+...+ +.++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHH
Confidence 3889999999999999999999999999999999999999999999999999999987632 5789999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc----CcccccccEEEEcCcccccc
Q 010672 185 AVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 185 ~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~----~~~l~~~~~lV~DEah~~~~ 260 (504)
+.|+.+.++++. ..++++..+.|+.+ ..+...+..+++|+|+||++|...+... ...++++++|||||||.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 44678777767665 4455566677999999999986533221 12378899999999999976
Q ss_pred CCcHHHHHHHHHhc-------CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeec--------
Q 010672 261 MGFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-------- 325 (504)
Q Consensus 261 ~~~~~~~~~il~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 325 (504)
. |+..+..++..+ ..++|++++|||+++..+ ++..++..+..+. .... .........+...
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccc
Confidence 4 777766665543 467899999999998754 6777777776543 2221 1111111111000
Q ss_pred --------ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--------CCCeEEecCCCCHHHHHHHHHH
Q 010672 326 --------SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSE 389 (504)
Q Consensus 326 --------~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--------~~~~~~ih~~~~~~~r~~~~~~ 389 (504)
....+...+.+++. .+.++||||+|++.|+.++..|++. +..+..+||++++++|..++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 01233444444443 3568999999999999999998753 5678899999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc--cHHHHHHHH
Q 010672 390 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELI 460 (504)
Q Consensus 390 f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~ 460 (504)
|++|++++||||+++++|||||++++||+|++|.+.++|+||+|||||.|+.|.++++...+ |..++....
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999998743 433444333
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.5e-52 Score=406.59 Aligned_cols=355 Identities=30% Similarity=0.473 Sum_probs=318.4
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010672 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (504)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 170 (504)
++..+.....|+++-+...++..|...+|..|+++|..|||+++.+-|+|++|..|+|||++|.+.++..+.. ..
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RS 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----cc
Confidence 4445666778999999999999999999999999999999999999999999999999999999888877654 23
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCC-CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccE
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (504)
..+..+||+||||+|.|+.+.+.++++. .+.++.++.||+........+. .++|+|+||+++..+++.+.++.+.+++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeE
Confidence 4678999999999999999999999864 6799999999998877766654 4789999999999999999999999999
Q ss_pred EEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChh
Q 010672 250 LVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES 328 (504)
Q Consensus 250 lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+|+||||.+.+ ..|..++..|+..++..+|++.+|||.|.++..++..++.+|..+.+...+ .....+.|++..+...
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCC
Confidence 99999999998 569999999999999999999999999999999999999999999887766 4445677777765543
Q ss_pred --------HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010672 329 --------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400 (504)
Q Consensus 329 --------~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVa 400 (504)
.|.+.|-.+++.+.- .++||||+....|+-++.+|...|++|.+|.|.|++.+|..+++.+++-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~ipy-~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIPY-VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCch-HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 466666666666533 47999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 401 T~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
||..+||||-+++++|||.|.|-+.++|.||||||||+|..|.+++|+.....
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999987654
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.1e-50 Score=427.77 Aligned_cols=343 Identities=23% Similarity=0.335 Sum_probs=265.6
Q ss_pred CcccCCCC--HHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 100 SFRDVGFP--DYVMQEIS-KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 100 ~f~~~~l~--~~~~~~l~-~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
.|...++| ..+...++ .+|+..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ...+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 45544444 44544444 368999999999999999999999999999999999999999854 34699
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh------cCCcEEEeChHHHHH--HHHcc---Ccccc
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLID--MLESH---NTNLR 245 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~Iiv~T~~~l~~--~l~~~---~~~l~ 245 (504)
||+|+++|+.++...+... ++....+.++.....+...+. ..++|+++||++|.. .+... .....
T Consensus 505 VISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 9999999998666666553 488888888887665544332 457999999999852 22211 11234
Q ss_pred cccEEEEcCccccccCC--cHHHHHHH--HHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeee
Q 010672 246 RVTYLVLDEADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH 321 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~--~~~~~~~i--l~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (504)
.+.+|||||||+++++| |++.+..+ +...-+..+++++|||++..+.+.....+.-.....+.... ...++..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf--~RpNL~y- 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF--NRPNLWY- 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc--CccceEE-
Confidence 58899999999999987 78877764 44444678899999999998887555554322221221111 1122222
Q ss_pred eeecChh-HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010672 322 VDIVSES-QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400 (504)
Q Consensus 322 ~~~~~~~-~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVa 400 (504)
.++... .....+..++.....+.+.||||.+++.|+.++..|+..|+.+..+||+|++++|..++++|.+|+++||||
T Consensus 658 -~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 658 -SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred -EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 222222 234556666665444568999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010672 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 401 T~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 461 (504)
|+++++|||+|+|++||||++|.+++.|+||+|||||.|..|.|++|++..|....+.++.
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887766665553
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-50 Score=413.63 Aligned_cols=326 Identities=26% Similarity=0.379 Sum_probs=257.0
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
..||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 369999999999999999999999999999999999999998853 345999999999999999988875
Q ss_pred cCCCCceEEEEECCCCChHhH---HHH-hcCCcEEEeChHHHHHH---HHccCcccccccEEEEcCccccccCC--cHHH
Q 010672 196 GASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDM---LESHNTNLRRVTYLVLDEADRMLDMG--FEPQ 266 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~---l~~~~~~l~~~~~lV~DEah~~~~~~--~~~~ 266 (504)
+ +.+..+.++....... ..+ ....+|+++||+++... +.. .....++++|||||||++.+++ |.+.
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~-l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT-LEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH-HHhcCCcCEEEEeCCcccCccccccHHH
Confidence 4 6666666665543222 222 23479999999997532 111 1146789999999999999876 6676
Q ss_pred HHHH--HHhcCCCCceEEecCCCcHHHHHHHHHhh--cCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc
Q 010672 267 IKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 342 (504)
Q Consensus 267 ~~~i--l~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 342 (504)
+..+ +....++.+++++|||+++.+.......+ .+|..+.. ... ..++...+.. ........+..++....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFD---RPNLYYEVRR-KTPKILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCC---CCCcEEEEEe-CCccHHHHHHHHHHHhc
Confidence 6654 23334788999999999988765554443 23433322 211 1122222211 12245556777776555
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP 422 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p 422 (504)
++.++||||+++++|+.++..|+..++.+..+|++|++++|..++++|++|+++|||||+++++|||+|++++||++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010672 423 GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (504)
Q Consensus 423 ~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (504)
.|++.|+||+||+||.|..|.|++|+++.|...++.++..
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999999999999999988777666543
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-51 Score=390.64 Aligned_cols=352 Identities=29% Similarity=0.457 Sum_probs=293.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhc---------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 109 YVMQEISKAGFFEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~---------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
.+.+++.++++..+.|+|..++|+++. .+|+.+.||||||||++|.+|+++.+..++. +.-++|||+
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavViv 222 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVVIV 222 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEEEe
Confidence 344558899999999999999999863 4789999999999999999999999887542 357799999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcC-----CcEEEeChHHHHHHHHc-cCcccccccEEEEc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-----VEIVIATPGRLIDMLES-HNTNLRRVTYLVLD 253 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-----~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lV~D 253 (504)
||++|+.|+++.|.+++...++.|+.+.|..+...+...+... .||+|+||++|++++.+ ..++|+++.++|+|
T Consensus 223 Ptr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred eHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 9999999999999999999999998888888887777776543 38999999999999984 67899999999999
Q ss_pred CccccccCCcHHHHHHHHHhcC----------------------------------CCCceEEecCCCcHHHHHHHHHhh
Q 010672 254 EADRMLDMGFEPQIKKILSQIR----------------------------------PDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~----------------------------------~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
|||+|++..|...+-.+...+. +..+.+.+|||+...-..+...-+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 9999998877766655544331 223467888888766666666677
Q ss_pred cCCeEEEEcC---CCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh----hCCCCeE
Q 010672 300 YNPYKVIIGS---PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPAL 372 (504)
Q Consensus 300 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~----~~~~~~~ 372 (504)
..|....+.. .....+..+.+....++...|...+..++... +..++|+|+++...+..++..|+ +..+.+.
T Consensus 383 ~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s 461 (620)
T KOG0350|consen 383 HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVS 461 (620)
T ss_pred CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhh
Confidence 7775444332 22344555666666666667777777777764 44689999999999999999987 3456677
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEecccc
Q 010672 373 SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (504)
Q Consensus 373 ~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~ 452 (504)
.+.|.++...|.+.+++|..|++.||||+|+++||+|+.+++.||+||+|.+..+|+||+||++|+|+.|.|+++.+..+
T Consensus 462 ~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 462 EFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010672 453 ARFAKELITILEE 465 (504)
Q Consensus 453 ~~~~~~l~~~l~~ 465 (504)
.+.+.++++....
T Consensus 542 ~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 542 KRLFSKLLKKTNL 554 (620)
T ss_pred chHHHHHHHHhcc
Confidence 8888777776655
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-48 Score=420.45 Aligned_cols=336 Identities=22% Similarity=0.309 Sum_probs=263.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.|+++++|+.+++.+.+.|+.+|+|+|.++++. +++++|++++||||||||++|++|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 6789999999999999999999999998853 5679999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~ 258 (504)
+|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998753 47888888888654332 2345799999999998888766666889999999999999
Q ss_pred ccCCcHHHHHHHHHhc---CCCCceEEecCCCcHHHHHHHHHhhcC-------CeEEEE--cCCCcccccceeeeeeecC
Q 010672 259 LDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYN-------PYKVII--GSPDLKANHAIRQHVDIVS 326 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~ 326 (504)
.+.++++.++.++..+ .+..|++++|||+++ ..+++.+.... |+.+.. ..............+....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9988999998887665 478899999999976 44555443221 111110 0000000000000010001
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC------------------------------------CC
Q 010672 327 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG------------------------------------WP 370 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~------------------------------------~~ 370 (504)
.......+.+. +..++++||||++++.|+.++..|.... ..
T Consensus 229 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDT---LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHH---HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11222223332 3356799999999999999988875421 35
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cC-----CCCCHhHHHHHhcccccCCCc
Q 010672 371 ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-----FPGSLEDYVHRIGRTGRAGAK 441 (504)
Q Consensus 371 ~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~-----~p~s~~~~~QriGR~gR~g~~ 441 (504)
+..+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 66 578999999999999999876
Q ss_pred --ceEEEEeccc
Q 010672 442 --GTAYTFFTAA 451 (504)
Q Consensus 442 --g~~~~~~~~~ 451 (504)
|.++++....
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8999988764
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.7e-48 Score=407.24 Aligned_cols=332 Identities=23% Similarity=0.372 Sum_probs=257.2
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 107 PDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 107 ~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
+....+.|++ .||.+|+|+|.++++.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3334444443 69999999999999999999999999999999999999999854 33599999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCChHhHH---HHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccC
Q 010672 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (504)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~ 261 (504)
.|+.+.+..++ +...++.++........ .+. ...+++++||++|............++++|||||||++.++
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99999988764 66666666655443322 122 34789999999986321112233457899999999999987
Q ss_pred C--cHHHHHHH--HHhcCCCCceEEecCCCcHHHHHHHHHhh--cCCeEEEEcCCCcccccceeeeeeecChhHHHHHHH
Q 010672 262 G--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (504)
Q Consensus 262 ~--~~~~~~~i--l~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (504)
+ |.+.+..+ +....++.+++++|||++..+.......+ .+|... ..... ..++. +.+.....+...+.
T Consensus 155 G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl~--~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIR--YTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcce--eeeeeccchHHHHH
Confidence 6 66666544 22233688999999999987765433332 344332 22211 11121 22233334455666
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~ 415 (504)
..+... .+.++||||+|+++|+.++..|++.++.+..+|++|++++|..+++.|++|+++|||||+++++|||+|++++
T Consensus 229 ~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 229 RYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 666543 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHH
Q 010672 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (504)
Q Consensus 416 VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 460 (504)
||+|++|.|.++|+||+|||||.|..|.|++|+++.|...++.++
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876665554
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.3e-47 Score=413.30 Aligned_cols=343 Identities=22% Similarity=0.272 Sum_probs=255.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCC-CCCCCEEEEEcccHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA-PGDGPIVLVLAPTREL 184 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~vlil~Pt~~L 184 (504)
+++.+.+.+.+ +|..|+|+|.++|+.+++++|++++||||||||++|++|++.++....... ...+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56677666655 789999999999999999999999999999999999999999887532211 1346789999999999
Q ss_pred HHHHHHHHHH-------h----cCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc--ccccccEE
Q 010672 185 AVQIQQESTK-------F----GASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYL 250 (504)
Q Consensus 185 ~~q~~~~~~~-------~----~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--~l~~~~~l 250 (504)
+.|+++.+.. + +... ++++.+.+|+.+.......+...++|+|+||++|..++.+... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999875542 2 2233 6788889999887777667777899999999999877765432 47899999
Q ss_pred EEcCccccccCCcHHHHHHHHHh----cCCCCceEEecCCCcHHHHHHHHHhhcC-----CeEEEEcCCCcccccceeee
Q 010672 251 VLDEADRMLDMGFEPQIKKILSQ----IRPDRQTLYWSATWPKEVEHLARQYLYN-----PYKVIIGSPDLKANHAIRQH 321 (504)
Q Consensus 251 V~DEah~~~~~~~~~~~~~il~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 321 (504)
|+||+|.+.+..++..+..++.. ..+..|++++|||+++ ..+++...... +..+.+..........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999999987777666555443 3467899999999976 34444433221 21111111110111001000
Q ss_pred -----eeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhC------CCCeEEecCCCCHHHHHHHHHH
Q 010672 322 -----VDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSE 389 (504)
Q Consensus 322 -----~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~------~~~~~~ih~~~~~~~r~~~~~~ 389 (504)
............+...+... ...+++||||+|++.|+.++..|++. +..+..+||++++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 00011112223333333332 34568999999999999999999863 4679999999999999999999
Q ss_pred HhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC-CCcceEEEEecc
Q 010672 390 FKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTFFTA 450 (504)
Q Consensus 390 f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~-g~~g~~~~~~~~ 450 (504)
|++|+++|||||+++++|||+|++++||+++.|.++.+|+||+||+||. |..+.++++...
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999986 444555555443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.7e-47 Score=401.01 Aligned_cols=322 Identities=24% Similarity=0.377 Sum_probs=257.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.+..++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999998843 3358999999999999999988863
Q ss_pred CCCCceEEEEECCCCChHhHHH----HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC--cHHHHHHH
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~--~~~~~~~i 270 (504)
+.+..+.++......... .....+|+++||++|............++++|||||||.+.+++ |.+.+..+
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 667777777655443221 23467999999999864333333445689999999999999866 77776665
Q ss_pred HHhc--CCCCceEEecCCCcHHHHHHHHHhhc--CCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCe
Q 010672 271 LSQI--RPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSR 346 (504)
Q Consensus 271 l~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 346 (504)
.... -+..+++++|||++..+.......+. ++..+ .... ...++ .+.+.....+...+.+.+.... +.+
T Consensus 154 ~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~---~r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~~ 226 (591)
T TIGR01389 154 GSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-ITSF---DRPNL--RFSVVKKNNKQKFLLDYLKKHR-GQS 226 (591)
T ss_pred HHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCC---CCCCc--EEEEEeCCCHHHHHHHHHHhcC-CCC
Confidence 4322 24556999999999888766555543 23322 2211 11112 2223334556677777777643 568
Q ss_pred EEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHh
Q 010672 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE 426 (504)
Q Consensus 347 ~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~ 426 (504)
+||||++++.|+.+++.|...++++..+|++|+.++|..+++.|.+|+++|||||+++++|||+|++++||+|++|.|.+
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~ 306 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLE 306 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCcceEEEEeccccHHHHHHHH
Q 010672 427 DYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (504)
Q Consensus 427 ~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 460 (504)
.|+|++|||||.|..+.|+++++..|....+.++
T Consensus 307 ~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 307 SYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999999999988766555444
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.8e-47 Score=407.30 Aligned_cols=337 Identities=19% Similarity=0.242 Sum_probs=263.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
+|+++++++.+.+.+++.|+.+|+|+|.++++. +++++|+++++|||||||++|.+|++.++... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 567889999999999999999999999999986 78999999999999999999999999887652 5689999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~ 258 (504)
+|+++|+.|+++.+.++. ..++++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998874 457889999988765432 2356899999999998888766667889999999999999
Q ss_pred ccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecCh-------hHHH
Q 010672 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-------SQKY 331 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~ 331 (504)
.+.+++..++.++..+....|+|++|||+++ ..+++..+....+.......... .....+....... ....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLR-KGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcce-eeEecCCeeeccCcchhcchHHHH
Confidence 9988999999999999899999999999986 46666543322111000000000 0000111111111 1111
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---------------------------------CCCeEEecCCC
Q 010672 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSIHGDK 378 (504)
Q Consensus 332 ~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~---------------------------------~~~~~~ih~~~ 378 (504)
..+.+.+ ..++++||||+|++.|+.++..|... ...+..+|++|
T Consensus 229 ~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 229 SLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 2222333 24578999999999998877666321 23588999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-------cCCCC-CHhHHHHHhcccccCC--CcceEEEEe
Q 010672 379 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------YDFPG-SLEDYVHRIGRTGRAG--AKGTAYTFF 448 (504)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~-------~~~p~-s~~~~~QriGR~gR~g--~~g~~~~~~ 448 (504)
++++|..+++.|++|.++|||||+++++|||+|++++||. ++.|. +..+|.||+|||||.| ..|.++++.
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 44443 5779999999999975 569999998
Q ss_pred cccc
Q 010672 449 TAAN 452 (504)
Q Consensus 449 ~~~~ 452 (504)
...+
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 8655
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.4e-45 Score=384.29 Aligned_cols=314 Identities=21% Similarity=0.255 Sum_probs=245.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC-EEEEEcccHHHHHHHHHHHHH
Q 010672 117 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP-IVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~-~vlil~Pt~~L~~q~~~~~~~ 194 (504)
.||. |+|||.++++.++.|+ ++++++|||||||.++.++++.. .. ....+ ++++++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5776 9999999999999998 57778999999999766554422 11 11234 455577999999999999998
Q ss_pred hcCCC-----------------------CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc---------
Q 010672 195 FGASS-----------------------KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------- 242 (504)
Q Consensus 195 ~~~~~-----------------------~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--------- 242 (504)
+++.. .+++.+++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 87644 4889999999999999999999999999995 44444443
Q ss_pred -------ccccccEEEEcCccccccCCcHHHHHHHHHhc--CCC---CceEEecCCCcHHHHHHHHHhhcCCeEEEEcCC
Q 010672 243 -------NLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPD---RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 310 (504)
Q Consensus 243 -------~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~--~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 310 (504)
.+.++++||||||| ++++|...+..|+..+ ++. .|+++||||++.++.+++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 7889999999999964 332 699999999999888888888777776555443
Q ss_pred CcccccceeeeeeecChhHHHHHHHHHHHhh--cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHH----
Q 010672 311 DLKANHAIRQHVDIVSESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD---- 384 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~---- 384 (504)
.. ....+.+.+ ..+...|...++..+... ...+++||||+|++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RL-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cc-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 32 223344433 334444554444433221 2346899999999999999999998876 8999999999999
Q ss_pred -HHHHHHhc----CC-------CcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcc-eEEEEecc
Q 010672 385 -WVLSEFKA----GK-------SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG-TAYTFFTA 450 (504)
Q Consensus 385 -~~~~~f~~----g~-------~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g-~~~~~~~~ 450 (504)
.++++|++ +. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.+ ..+++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 44 689999999999999986 888888777 799999999999999863 44555543
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-45 Score=394.99 Aligned_cols=331 Identities=21% Similarity=0.282 Sum_probs=255.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
+|+++++|+.+++.+.+.+|. |+++|.++++.++++++++++||||||||+++.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999998886 999999999999999999999999999999999999888764 45799999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
|+++||.|+++.+.++. ..++++....|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 457788888887654332 23467999999999988887766678899999999999999
Q ss_pred cCCcHHHHHHHHHh---cCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeee-----ecC-hhHH
Q 010672 260 DMGFEPQIKKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-----IVS-ESQK 330 (504)
Q Consensus 260 ~~~~~~~~~~il~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~k 330 (504)
+.+++..++.++.. ++++.|+|++|||+++ ..+++..+....+.... .+..+...+. ... ....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~------r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNF------RPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCC------CCCCeEEEEEecCeeeecccccc
Confidence 98888888887665 4578899999999976 45666544322211000 0111110000 011 1111
Q ss_pred HHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhC-------------------------CCCeEEecCCCCHHHHH
Q 010672 331 YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-------------------------GWPALSIHGDKSQAERD 384 (504)
Q Consensus 331 ~~~l~~~l~~-~~~~~~~lIf~~s~~~~~~l~~~L~~~-------------------------~~~~~~ih~~~~~~~r~ 384 (504)
...+..++.+ ..+++++||||++++.|+.++..|.+. ...+..+|+++++++|.
T Consensus 222 ~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 1123334443 345679999999999999999888653 12467899999999999
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcC---------CCCCHhHHHHHhcccccCCC--cceEEEEeccc
Q 010672 385 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD---------FPGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA 451 (504)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~---------~p~s~~~~~QriGR~gR~g~--~g~~~~~~~~~ 451 (504)
.+++.|++|.++|||||+++++|||+|+..+|| .+ .|.++.+|.||+|||||.|. .|.+++++...
T Consensus 302 ~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 999999999999999999999999999875555 33 24578999999999999985 57788876544
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3e-44 Score=386.83 Aligned_cols=336 Identities=21% Similarity=0.233 Sum_probs=259.8
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 106 FPDYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 106 l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.+..+++.+.+ .+| +|||+|.+||+.++++ .|.+++|+||||||.+|++|++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 34556666655 466 6999999999999874 689999999999999999999887764 5789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcC
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DE 254 (504)
+||++||.|+++.++++....++++..++++...... ...+.. .++|+|+||..+ +....+.++++||+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeec
Confidence 9999999999999999887788888888887664433 233333 589999999433 3456788999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
+|++ +...+..+..+.+++++++||||+.+....+......++..+...... ...+...+.......-..
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~~i~~-- 651 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPELVRE-- 651 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHHHHHH--
Confidence 9995 344556667777889999999998776655555555555544432221 122333332222211111
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 010672 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~ 412 (504)
.++..+..+++++|||++++.++.+++.|++. ++++..+||+|++.+|..++++|++|+++|||||+++++|||+|+
T Consensus 652 -~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 652 -AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred -HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 22334445679999999999999999999884 788999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-CHhHHHHHhcccccCCCcceEEEEecccc--HHHHHHHHHHHHHh
Q 010672 413 VKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEA 466 (504)
Q Consensus 413 v~~VI~~~~p~-s~~~~~QriGR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~ 466 (504)
+++||+++.|. +..+|.||+||+||.|+.|.|++++.+.+ .....+-++.+++.
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 99999999865 67899999999999999999999997653 23444445555554
No 47
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-46 Score=327.05 Aligned_cols=334 Identities=29% Similarity=0.523 Sum_probs=292.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.-|.++-+.+++++++..+||..|..+|.++||.+.-|-|++++|..|.|||.+|.++.|+++.- ......+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep-----v~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP-----VDGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-----CCCeEEEEEE
Confidence 44677788999999999999999999999999999999999999999999999999988887643 2235679999
Q ss_pred cccHHHHHHHHHHHHHhcCC-CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 179 APTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
|.||+||-|+.+++.+|.+. ..+++.+.+||.+.......+.+-++|+|+||++++.+..+..+++++++..|+||||.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999999888765 45899999999999888888888899999999999999999999999999999999998
Q ss_pred cccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHH
Q 010672 258 MLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (504)
Q Consensus 258 ~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (504)
|+.. ..+..+..|.+..+...|++++|||+++++....+.++.+|..+.+..........+.|++....+.+|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 8753 346788888888899999999999999999999999999999999888777777788899988899999999998
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~V 416 (504)
+|..+. -.+++||+.+... | . | +.+ ||||+++++|+||..++.|
T Consensus 277 LLd~Le-FNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 277 LLDVLE-FNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhhh-hcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceee
Confidence 887653 3579999988654 0 0 3 223 8999999999999999999
Q ss_pred EEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCHH
Q 010672 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPE 473 (504)
Q Consensus 417 I~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 473 (504)
||||+|.+.++|.||+|||||.|..|.+++|++.. +...+..+.+..+-...++|++
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999999865 6667777777666666666766
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.3e-44 Score=372.84 Aligned_cols=336 Identities=25% Similarity=0.308 Sum_probs=274.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
|++.+.+.+... |.+|||.|.+|||.+.+|+|+|++||||||||+++++|++..+.........++..+||++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788999999888 9999999999999999999999999999999999999999999886422344578899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc--CcccccccEEEEcCccccccCCc
Q 010672 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGF 263 (504)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lV~DEah~~~~~~~ 263 (504)
+.+...+...+...++.+.+.+|+++.........+.+||+|+||+.|.-++... ...+.++.++|+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999888888888889999999999998777653 33688999999999999987766
Q ss_pred HHHHHHHHHhc---CCCCceEEecCCCcHHHHHHHHHhhcC--CeEEEEcCCCcccccceeeeeeecC---------hhH
Q 010672 264 EPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYN--PYKVIIGSPDLKANHAIRQHVDIVS---------ESQ 329 (504)
Q Consensus 264 ~~~~~~il~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 329 (504)
+.++.--+..+ .++.|.|++|||..+ ..+.++..... +..+...... .. ....+.... ...
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~--k~--~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA--KK--LEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC--Cc--ceEEEEecCCccccccchhHH
Confidence 66555444433 348999999999874 55666666555 3333322221 11 111111111 112
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010672 330 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 408 (504)
Q Consensus 330 k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~-~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gv 408 (504)
.+..+.+++++ ...+|||+||+..|+.++..|++.+ .++..+||+++.+.|..++++|++|+.+++|||+.++-||
T Consensus 242 ~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 242 LYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 33334444433 3479999999999999999999986 8899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHhHHHHHhccccc-CCCcceEEEEecc
Q 010672 409 DVKDVKYVINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTA 450 (504)
Q Consensus 409 di~~v~~VI~~~~p~s~~~~~QriGR~gR-~g~~g~~~~~~~~ 450 (504)
|+.+++.||++..|.+...++||+||+|+ .+....++++...
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999996 5666777777665
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.8e-43 Score=373.81 Aligned_cols=337 Identities=20% Similarity=0.255 Sum_probs=251.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
..+.+.+.+.--++||++|.++++.+.++ .+.|+++|||||||++|++|++..+.. +.+++|++||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 45555555443447999999999999876 379999999999999999999987754 6789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 182 ~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
++||.|+++.++++....++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999988888999999999875333 334444 48999999987743 34577899999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHH
Q 010672 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (504)
+. ...+..+......+++++||||+.+....+.. ..+.....+.... .....+...+.... +...+++.
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~~~~~---~~~~~~~~ 463 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELP-PGRKPITTVVIPDS---RRDEVYER 463 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCC-CCCCCcEEEEeCcc---cHHHHHHH
Confidence 63 22333444445578999999998665443332 2222222222111 11222333332222 22333333
Q ss_pred HH-hhcCCCeEEEEeCCcc--------cHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010672 338 LE-DIMDGSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (504)
Q Consensus 338 l~-~~~~~~~~lIf~~s~~--------~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (504)
+. ....+.+++|||+..+ .+..+++.|.+. ++++..+||+|++.+|+.++++|++|+++|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 33 3345679999999654 456677777765 478999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCC-CHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010672 407 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (504)
Q Consensus 407 Gvdi~~v~~VI~~~~p~-s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (504)
|||+|++++||+++.|. ..+.+.||+||+||.|..|.|++++.........+.++.+.+...
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~d 606 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETND 606 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcc
Confidence 99999999999999986 578999999999999999999999965433445555666766443
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.8e-43 Score=384.13 Aligned_cols=352 Identities=18% Similarity=0.188 Sum_probs=266.0
Q ss_pred CHHHHHHH-HHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 107 PDYVMQEI-SKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 107 ~~~~~~~l-~~~~~~~~~~~Q~~~i~~~l~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
+..+.+.+ ....| +||++|.+||+.++.+ .|++++++||+|||.+|+.+++..+.. +++++||+
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLv 656 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLV 656 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEe
Confidence 33444444 45566 8999999999999986 799999999999999998887766543 67899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH---h-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEa 255 (504)
||++||.|+++.+.++....++++.++.++.+...+...+ . ..++|+|+||+.+ . ....+.++++||+||+
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEE 731 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEech
Confidence 9999999999999987666778888888887766554433 2 3589999999644 2 3456788999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHH
Q 010672 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (504)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (504)
|++ ++. ....+..++++.|+++||||+.+....++...+.++..+...... ...+.+.+......... .
T Consensus 732 hrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k---~ 800 (1147)
T PRK10689 732 HRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVR---E 800 (1147)
T ss_pred hhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHH---H
Confidence 997 322 345567778899999999998887878877777788766543322 12233333222221111 2
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v 413 (504)
.++.++..+++++|||++++.++.+++.|++. +..+..+||+|++.+|..++.+|++|+++|||||+++++|||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v 880 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccC
Confidence 23444445679999999999999999999886 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC-CCHhHHHHHhcccccCCCcceEEEEecccc--HHHHHHHHHHHHHhCC---CCCHHHHHhhcCCCC
Q 010672 414 KYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEEAGQ---KVSPELAAMGRGAPP 483 (504)
Q Consensus 414 ~~VI~~~~p-~s~~~~~QriGR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~l~~~~~~~~~ 483 (504)
++||..+.. .+..+|+||+||+||.|+.|.|++++.... ...+.+-++.+++... -..--+.+|.-.+.|
T Consensus 881 ~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g 956 (1147)
T PRK10689 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 (1147)
T ss_pred CEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCc
Confidence 999955443 356789999999999999999999886542 2334444555555433 333444555544444
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-42 Score=367.51 Aligned_cols=348 Identities=19% Similarity=0.248 Sum_probs=252.3
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010672 110 VMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (504)
Q Consensus 110 ~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (504)
+.+.+...+| +||++|.+|++.++++ .+.++++|||||||++|++|++..+.. +.+++|++||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHHH
Confidence 3444556677 8999999999999875 258999999999999999999887754 677999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 184 L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
||.|+++.+.++....++++..++|+...... ...+. ..++|+|+||+.+.+ ...+.++++||+||+|++.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhcc
Confidence 99999999999988888999999999876542 33333 347999999988753 3457789999999999964
Q ss_pred cCCcHHHHHHHHHhcC--CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHH
Q 010672 260 DMGFEPQIKKILSQIR--PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (504)
Q Consensus 260 ~~~~~~~~~~il~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (504)
.. +...+..... ..+++++||||+.+....+.. ..+.....+.... .....+...+. ....+ ..++..
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~~--~~~~~-~~~~~~ 440 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVLI--KHDEK-DIVYEF 440 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEEe--CcchH-HHHHHH
Confidence 32 2222333322 268899999997654433322 1111111111111 11122222222 22222 444444
Q ss_pred HHh-hcCCCeEEEEeCCcc--------cHHHHHHHHhh--CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010672 338 LED-IMDGSRILIFMDTKK--------GCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (504)
Q Consensus 338 l~~-~~~~~~~lIf~~s~~--------~~~~l~~~L~~--~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (504)
+.+ ...+.+++|||+..+ .++.+++.|.+ .++.+..+||+|++++|..++++|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 443 345678999998763 46677777765 3678999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCC-CHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010672 407 GLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 481 (504)
Q Consensus 407 Gvdi~~v~~VI~~~~p~-s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 481 (504)
|||+|++++||+++.|. +.+.|.||+||+||.|..|.|++++...........++.+.+...-+.-.-.++.-.+
T Consensus 521 GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~Rg 596 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELRG 596 (630)
T ss_pred CcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 99999999999999986 6889999999999999999999999544334444555666665544433344554433
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.7e-42 Score=377.81 Aligned_cols=304 Identities=23% Similarity=0.305 Sum_probs=226.7
Q ss_pred EEccCCCchHHHHHHHHHHHHhcCCCC-----CCCCCCEEEEEcccHHHHHHHHHHHHHh-----------c-CCCCceE
Q 010672 141 GIAETGSGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKF-----------G-ASSKIKS 203 (504)
Q Consensus 141 ~~a~TGsGKT~~~~l~~l~~l~~~~~~-----~~~~~~~vlil~Pt~~L~~q~~~~~~~~-----------~-~~~~~~~ 203 (504)
++||||||||++|++|++..+..++.. ...++.++|||+|+++|+.|+.+.++.. + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 1234688999999999999999988641 1 1346889
Q ss_pred EEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-CcccccccEEEEcCccccccCCcHHH----HHHHHHhcCCCC
Q 010672 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFEPQ----IKKILSQIRPDR 278 (504)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lV~DEah~~~~~~~~~~----~~~il~~~~~~~ 278 (504)
...+|+++...+...+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..++.. ++.+...+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999887777777778999999999998887653 34689999999999999997654444 444444556778
Q ss_pred ceEEecCCCcHHHHHHHHHhhcC-CeEEEEcCCCcccccceeeeeeecCh------------------hHH-H-HHHHHH
Q 010672 279 QTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSE------------------SQK-Y-NKLVKL 337 (504)
Q Consensus 279 ~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~k-~-~~l~~~ 337 (504)
|+|++|||+++ .+++++.+... +..+.. ... .....+...+...+. ... . .....+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~-~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPA-MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCC-CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 56666554433 444432 221 111122211111000 000 0 011233
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCC---------------------------------CCeEEecCCCCHHHHH
Q 010672 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------------WPALSIHGDKSQAERD 384 (504)
Q Consensus 338 l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~---------------------------------~~~~~ih~~~~~~~r~ 384 (504)
+..+....++||||||++.|+.++..|++.. +.+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 4444456789999999999999999997631 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC-CCcceEEEE
Q 010672 385 WVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA-GAKGTAYTF 447 (504)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~-g~~g~~~~~ 447 (504)
.+++.|++|++++||||+++++||||+++++||+++.|.++.+|+||+||+||. +..+.++++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999999999999999999996 333444433
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.7e-41 Score=321.61 Aligned_cols=329 Identities=24% Similarity=0.274 Sum_probs=247.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..+++.||......++.+ |+|++.|||.|||+++++-+...+...+ + ++|+++||+-|+.|..+.|.++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 347899999999888875 9999999999999999887777776642 3 7999999999999999999998877
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
..-.++.+.|..........+ ...+|+|+||+.+.+-+..+..++.++.+|||||||+....---..+.+.......++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 677788888887765555444 4469999999999999999999999999999999998764432334444444556788
Q ss_pred ceEEecCCCcHHHH---HHHHHhhcCCeEEE-------------------------------------------------
Q 010672 279 QTLYWSATWPKEVE---HLARQYLYNPYKVI------------------------------------------------- 306 (504)
Q Consensus 279 ~~i~~SAT~~~~~~---~~~~~~~~~~~~~~------------------------------------------------- 306 (504)
.++++|||+..+.+ +.+.++....+.+.
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999533221 22221111111000
Q ss_pred --EcCCCcc---------------cc--cc----------------------------eeee------------------
Q 010672 307 --IGSPDLK---------------AN--HA----------------------------IRQH------------------ 321 (504)
Q Consensus 307 --~~~~~~~---------------~~--~~----------------------------~~~~------------------ 321 (504)
....... .. .. +.++
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 0000000 00 00 0000
Q ss_pred -----------------eeecChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhhCCCCeE--Ee-----
Q 010672 322 -----------------VDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPAL--SI----- 374 (504)
Q Consensus 322 -----------------~~~~~~~~k~~~l~~~l~~~~---~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~--~i----- 374 (504)
....-+.+|+..+.+++++.. ++.++|||++.+.+|+.+.++|.+.+..+. ++
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 000012346666666666654 345999999999999999999999877763 33
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-
Q 010672 375 --HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA- 451 (504)
Q Consensus 375 --h~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~- 451 (504)
..+|+|.++.++++.|++|+++|||||+++++|+|||.++.||+|++..|+..++||.|||||. +.|.++++++++
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 3579999999999999999999999999999999999999999999999999999999999998 999999999988
Q ss_pred -cHHHHH
Q 010672 452 -NARFAK 457 (504)
Q Consensus 452 -~~~~~~ 457 (504)
|..+++
T Consensus 483 rdeayy~ 489 (542)
T COG1111 483 RDEAYYY 489 (542)
T ss_pred hHHHHHH
Confidence 444443
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-41 Score=351.50 Aligned_cols=310 Identities=18% Similarity=0.227 Sum_probs=231.8
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchHHH---------HHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 124 PIQAQGWPMALKGRDLIGIAETGSGKTLA---------YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 124 ~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~---------~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+..-. .......++|++||++||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 37999999999999999999999999987 3344454442210 122356899999999999999999876
Q ss_pred hcCC---CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHH
Q 010672 195 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (504)
Q Consensus 195 ~~~~---~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il 271 (504)
.... .+..+.+.+|+... .......+..+|+|+|++.. ...+.++++|||||||.+..++ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 4432 45677888999763 22222334679999996521 2357889999999999988775 4455555
Q ss_pred HhcC-CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC----------hhHHHHHHHHHHHh
Q 010672 272 SQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS----------ESQKYNKLVKLLED 340 (504)
Q Consensus 272 ~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~ 340 (504)
.... ..+|+++||||++.+++.+ ..++.++..+.+... ....+.+.+.... ...+ ..+...+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHH
Confidence 5443 3459999999999888777 567788877766431 2233444432211 1122 223344433
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHH-hcCCCcEEEEccccccCCCCCCCCE
Q 010672 341 IM--DGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEF-KAGKSPIMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 341 ~~--~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f-~~g~~~vLVaT~~~~~Gvdi~~v~~ 415 (504)
.. ..+++||||+++.+++.+++.|++. ++.+..+||++++. ++++++| ++|+.+|||||+++++|||||+|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 3458999999999999999999876 68999999999975 4667777 7899999999999999999999999
Q ss_pred EEEcC---CCC---------CHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 416 VINYD---FPG---------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 416 VI~~~---~p~---------s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
||+++ .|. |.++|+||+|||||. +.|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 888999999999999 89999999998764
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-41 Score=341.95 Aligned_cols=325 Identities=25% Similarity=0.377 Sum_probs=257.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|+..+++-|.++|..+++++|+++.+|||.||+++|.+|++.. ...+|||+|..+|...+.+.+...+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~G 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAAG 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999855 1259999999999999988888865
Q ss_pred CCCCceEEEEECCCCChHhH---HHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC--cHHHHHHH
Q 010672 197 ASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~--~~~~~~~i 270 (504)
+.+.++.+..+..+.. ..+.. ..+++..+||+|..-.....+.-..+.++||||||.+++|| |++.+..+
T Consensus 82 ----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 82 ----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 6777776665544432 22223 37899999999864222222224568899999999999997 99988877
Q ss_pred HHhcC--CCCceEEecCCCcHHHHHHHHHhhcC-CeEEEEcCCCcccccceeeeeeecC-hhHHHHHHHHHHHh--hcCC
Q 010672 271 LSQIR--PDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLED--IMDG 344 (504)
Q Consensus 271 l~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~--~~~~ 344 (504)
-.... +++.++.+|||-++.+.+.....+.- ...+...+.+ .+++...+.... ...+.. .+.+ ....
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~~~~~q~~----fi~~~~~~~~ 230 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKGEPSDQLA----FLATVLPQLS 230 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---CchhhhhhhhcccHHHHHH----HHHhhccccC
Confidence 54432 58899999999998887666555443 3233333322 222222222221 223333 3332 3344
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCC
Q 010672 345 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 424 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s 424 (504)
+..||||.|++.++.+++.|...|+.+..+|++|+.++|..+.++|.+++++|+|||.+++.|||-|++++||||++|.|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHH
Q 010672 425 LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 463 (504)
Q Consensus 425 ~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 463 (504)
++.|.|-+|||||.|....|++|+.+.|......+++.-
T Consensus 311 ~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 311 IESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 999999999999999999999999999987766666553
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=358.11 Aligned_cols=340 Identities=21% Similarity=0.289 Sum_probs=268.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
..+++.+.+-+...++.++.+.|+.++...+ .++|+|+++|||||||+++++.++..+.+. +.+++|+||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3467788888888888888998888887655 559999999999999999999999998873 56799999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC
Q 010672 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (504)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~ 262 (504)
+||+|.+++++++ ...+++|...+|+...... ...+++|+|+||++|...+.+....+.++++||+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 9999999999944 4678999999998875542 23468999999999977777766678899999999999999987
Q ss_pred cHHHHHHHHHhcC---CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhH-------HHH
Q 010672 263 FEPQIKKILSQIR---PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ-------KYN 332 (504)
Q Consensus 263 ~~~~~~~il~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~ 332 (504)
.++.++.|+...+ +..|++++|||+|+ ..+++.+...++.........+.......+.+....... ...
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 7888888887764 44799999999997 888888887776643333333333333344443333222 233
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC-------------------------------------CCCeEEec
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIH 375 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ih 375 (504)
.+..++..+.+++++||||++++.+...++.|+.. -..+.++|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 34444555667789999999999999999888730 02245789
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE----EcC-----CCCCHhHHHHHhcccccCCCc--ceE
Q 010672 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYD-----FPGSLEDYVHRIGRTGRAGAK--GTA 444 (504)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI----~~~-----~p~s~~~~~QriGR~gR~g~~--g~~ 444 (504)
++++.++|..+.+.|+.|.++|||||+++++|||+|.-++|| .|+ .+-++.++.||+|||||.|-+ |.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999888877 455 344789999999999998855 777
Q ss_pred EEEec-cccHHH
Q 010672 445 YTFFT-AANARF 455 (504)
Q Consensus 445 ~~~~~-~~~~~~ 455 (504)
+++.+ ..+..+
T Consensus 402 ~i~~~~~~~~~~ 413 (766)
T COG1204 402 IILATSHDELEY 413 (766)
T ss_pred EEEecCccchhH
Confidence 77773 334444
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.1e-40 Score=363.89 Aligned_cols=304 Identities=22% Similarity=0.275 Sum_probs=239.1
Q ss_pred HHHHHHc-CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 010672 111 MQEISKA-GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (504)
Q Consensus 111 ~~~l~~~-~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 189 (504)
.+.+++. |+ +|+++|.++++.++.++|++++||||+|||+ |.++++..+.. .++++|||+||++|+.|+.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHH
Confidence 3344433 55 8999999999999999999999999999996 45555555432 2678999999999999999
Q ss_pred HHHHHhcCCCCceEEEEECCCCC-----hHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccccc---
Q 010672 190 QESTKFGASSKIKSTCIYGGVPK-----GPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD--- 260 (504)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~--- 260 (504)
+.+++++...++.+..++++... ..+...+. ..++|+|+||++|.+++. ......+++||+||||+|++
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhccc
Confidence 99999998888888877776542 22233344 358999999999998876 34456799999999999986
Q ss_pred --------CCcH-HHHHHHHHhcCC------------------------CCceEEecCCCcHH-HHHHHHHhhcCCeEEE
Q 010672 261 --------MGFE-PQIKKILSQIRP------------------------DRQTLYWSATWPKE-VEHLARQYLYNPYKVI 306 (504)
Q Consensus 261 --------~~~~-~~~~~il~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~ 306 (504)
+||. ..+..++..++. ..|++++|||+++. +.. .++.++..+.
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~ 295 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFE 295 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEE
Confidence 6774 677777776654 68999999999863 332 2334444555
Q ss_pred EcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHhhCCCCeEEecCCCCHHHH
Q 010672 307 IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAER 383 (504)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~---~~~l~~~L~~~~~~~~~ih~~~~~~~r 383 (504)
++... ....++.+.+.... ++...+.++++... .++||||++++. |+.+++.|+..|+++..+||+|
T Consensus 296 v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 296 VGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred ecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 55543 23345666655444 56777778776653 479999999888 9999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEE----ccccccCCCCCC-CCEEEEcCCCC------CHhHHHHHhcccccC
Q 010672 384 DWVLSEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG------SLEDYVHRIGRTGRA 438 (504)
Q Consensus 384 ~~~~~~f~~g~~~vLVa----T~~~~~Gvdi~~-v~~VI~~~~p~------s~~~~~QriGR~gR~ 438 (504)
...+++|++|+++|||| |++++||||+|+ +++||||+.|. ..+.|.||+||+...
T Consensus 366 ~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 366 ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 23459999999999999 689999999999 89999999998 678899999999743
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.8e-40 Score=342.78 Aligned_cols=304 Identities=16% Similarity=0.178 Sum_probs=223.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
...|+++|.++++.++.+++.++++|||+|||+++.. +...+... ...++|||+||++|+.||.+.+.+|+..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 4589999999999999999999999999999997654 22222221 1337999999999999999999998765
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
....+..+.+|.... ...+|+|+|++++.+... ..+.++++||+||||++... .+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 555566677765432 346899999999876432 24678999999999999754 4567777776778
Q ss_pred ceEEecCCCcHHHHHHH-HHhhcCCeEEEEcCCCcc-----ccc---------------c-----eeeee-eecChhHHH
Q 010672 279 QTLYWSATWPKEVEHLA-RQYLYNPYKVIIGSPDLK-----ANH---------------A-----IRQHV-DIVSESQKY 331 (504)
Q Consensus 279 ~~i~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~---------------~-----~~~~~-~~~~~~~k~ 331 (504)
++++||||++....... -..+..|+...+...++. ... . ....+ .......+.
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn 330 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRN 330 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHH
Confidence 99999999865322111 011111221111100000 000 0 00000 112223344
Q ss_pred HHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCC
Q 010672 332 NKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLD 409 (504)
Q Consensus 332 ~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gvd 409 (504)
..+.+++.... .+.++||||.+.++++.+++.|++.+.++..+||+++.++|..+++.|++|+..||||| +++++|+|
T Consensus 331 ~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 331 KWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 44444444432 34689999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCEEEEcCCCCCHhHHHHHhcccccCCCcce
Q 010672 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443 (504)
Q Consensus 410 i~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~ 443 (504)
+|++++||+++++.|...|+||+||++|.+..+.
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 9999999999999999999999999999876543
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=328.24 Aligned_cols=375 Identities=21% Similarity=0.304 Sum_probs=292.7
Q ss_pred CCccccCcccCccccCCCHHHHHHHHHhcCceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-Hhc
Q 010672 57 TPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALK 135 (504)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~ 135 (504)
...+|..++.+|.+....+.|... +++++.+...++ -...+++.+|+.+...|+..|+..+.|+|.-++.. ++.
T Consensus 157 rdlDkvl~ml~p~fdP~~~pE~Tr---yD~v~a~~~~~~--r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLe 231 (830)
T COG1202 157 RDLDKVLEMLDPRFDPLEDPELTR---YDEVTAETDEVE--RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLE 231 (830)
T ss_pred ccHHHHHHHhCccCCcccCccccc---ceeeeccccccc--cccccccCCcHHHHHHHHhcCcceecchhhhhhhhcccc
Confidence 334455555566555544444433 344443333332 24467889999999999999999999999999987 679
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
|.|.+++++|+||||++..++-+..++.. +.+.|+|+|..+||+|-++.|++-...+++++..-.|.......
T Consensus 232 G~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~ 304 (830)
T COG1202 232 GENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTR 304 (830)
T ss_pred CCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhccc
Confidence 99999999999999999999888887763 77899999999999999999998667888888777665433322
Q ss_pred H----HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc---CCCCceEEecCCCc
Q 010672 216 V----RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---RPDRQTLYWSATWP 288 (504)
Q Consensus 216 ~----~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~---~~~~~~i~~SAT~~ 288 (504)
. ......+||||+|++-+-.++..+ ..+.++..||+||+|.+-+...++.+.-++..+ -+..|+|.+|||..
T Consensus 305 ~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg 383 (830)
T COG1202 305 EEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVG 383 (830)
T ss_pred CCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecC
Confidence 1 222345899999999996666655 778999999999999999877777777776554 48899999999987
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeec-ChhHHHHHHHHHHHhhc-------CCCeEEEEeCCcccHHHH
Q 010672 289 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIM-------DGSRILIFMDTKKGCDQI 360 (504)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~-------~~~~~lIf~~s~~~~~~l 360 (504)
+ -+++++.+....+... ..+..++.++.+. ++.+|.+.+..+.+.-. -.+++|||++|++.|+.+
T Consensus 384 N-p~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~l 456 (830)
T COG1202 384 N-PEELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHEL 456 (830)
T ss_pred C-hHHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHH
Confidence 6 4578888776666543 2333445444444 47788888877776432 135899999999999999
Q ss_pred HHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE---cCC-CCCHhHHHHHhcccc
Q 010672 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN---YDF-PGSLEDYVHRIGRTG 436 (504)
Q Consensus 361 ~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~---~~~-p~s~~~~~QriGR~g 436 (504)
+..|...|+++..+|++++..+|..+...|.++++.++|+|.+++.|||+|.-++|+. .+. .-|+.+|.||.||||
T Consensus 457 A~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAG 536 (830)
T COG1202 457 ADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAG 536 (830)
T ss_pred HHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999997555441 222 338999999999999
Q ss_pred cCCCc--ceEEEEeccc
Q 010672 437 RAGAK--GTAYTFFTAA 451 (504)
Q Consensus 437 R~g~~--g~~~~~~~~~ 451 (504)
|.+.+ |.+|+++.+.
T Consensus 537 Rp~yHdrGkVyllvepg 553 (830)
T COG1202 537 RPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CCCcccCceEEEEecCC
Confidence 98754 8898888764
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.4e-40 Score=328.18 Aligned_cols=312 Identities=22% Similarity=0.245 Sum_probs=218.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCCh----
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---- 213 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~---- 213 (504)
+++++||||||||++|++|++..+... ...+++|++|+++|+.|+.+.+..+... .+..+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 579999999999999999999876542 2568999999999999999999986422 223333322110
Q ss_pred --------HhHHHH------hcCCcEEEeChHHHHHHHHccCc----ccc--cccEEEEcCccccccCCcHHHHHHHHHh
Q 010672 214 --------PQVRDL------QKGVEIVIATPGRLIDMLESHNT----NLR--RVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (504)
Q Consensus 214 --------~~~~~~------~~~~~Iiv~T~~~l~~~l~~~~~----~l~--~~~~lV~DEah~~~~~~~~~~~~~il~~ 273 (504)
...... ....+|+|+||+++...+..... .+. ..++|||||+|.+.+..+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000111 12357999999999887665211 111 23789999999998875444 5555555
Q ss_pred cC-CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeee--cChhHHHHHHHHHHHhhcCCCeEEEE
Q 010672 274 IR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI--VSESQKYNKLVKLLEDIMDGSRILIF 350 (504)
Q Consensus 274 ~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~~~l~~~l~~~~~~~~~lIf 350 (504)
+. .+.|+++||||+|+.+.+++..+...+........... ....+.+.. .....+...+..++.....++++|||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER--RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc--ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 53 57899999999998777777665443221111111100 001122111 12234455566666655567899999
Q ss_pred eCCcccHHHHHHHHhhCCC--CeEEecCCCCHHHHHH----HHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCC
Q 010672 351 MDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDW----VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGS 424 (504)
Q Consensus 351 ~~s~~~~~~l~~~L~~~~~--~~~~ih~~~~~~~r~~----~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s 424 (504)
|++++.|+.+++.|++.+. .+..+||++++.+|.. +++.|++++.+|||||+++++|+|++ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 9999999999999988765 4899999999999976 48899999999999999999999995 8899998877
Q ss_pred HhHHHHHhcccccCCCc----ceEEEEeccccH---HHHHHHHHHHH
Q 010672 425 LEDYVHRIGRTGRAGAK----GTAYTFFTAANA---RFAKELITILE 464 (504)
Q Consensus 425 ~~~~~QriGR~gR~g~~----g~~~~~~~~~~~---~~~~~l~~~l~ 464 (504)
+++|+||+||+||.|+. |..++|....+. .+..++++...
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~ 352 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTI 352 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHH
Confidence 88999999999998754 367777665443 34444444433
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.6e-39 Score=346.94 Aligned_cols=304 Identities=20% Similarity=0.262 Sum_probs=233.4
Q ss_pred HHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCCCCceEE
Q 010672 126 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGASSKIKST 204 (504)
Q Consensus 126 Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~~~~~~~~ 204 (504)
-.+.+..+.++++++++|+||||||+++.++++.... .+.+++|+.|||++|.|+.+.+. .++...+..+.
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3455666777889999999999999999999887752 14579999999999999999886 45544555555
Q ss_pred EEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc-ccccCCcHHH-HHHHHHhcCCCCceEE
Q 010672 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTLY 282 (504)
Q Consensus 205 ~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah-~~~~~~~~~~-~~~il~~~~~~~~~i~ 282 (504)
....+.. ......+|+|+|+++|.+++.+ ...++++++|||||+| ++++.++... +..+...++++.|+|+
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 4444322 1234578999999999998876 4578999999999999 5787766543 3456666788999999
Q ss_pred ecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHH-----HHHHHHHHhhcCCCeEEEEeCCcccH
Q 010672 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLEDIMDGSRILIFMDTKKGC 357 (504)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~lIf~~s~~~~ 357 (504)
||||++... ...++.++..+.+... ...+++.+......++. ..+..++.. ..+.+||||+++.++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEI 222 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHH
Confidence 999998754 2455555444433221 12244444433333332 122233322 346899999999999
Q ss_pred HHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCC-----------
Q 010672 358 DQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG----------- 423 (504)
Q Consensus 358 ~~l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~----------- 423 (504)
+.+++.|++ .++.+..+||+|++++|..+++.|++|+.+|||||+++++|||||+|++||+++.|.
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 478899999999999999999999999999999999999999999999999999874
Q ss_pred -------CHhHHHHHhcccccCCCcceEEEEeccccHH
Q 010672 424 -------SLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (504)
Q Consensus 424 -------s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~ 454 (504)
|.++|+||+|||||. +.|.||.++++.+..
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 345699999999999 899999999986543
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.1e-39 Score=366.59 Aligned_cols=328 Identities=19% Similarity=0.245 Sum_probs=250.0
Q ss_pred HHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 108 DYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 108 ~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
.++.+.+++ .|| +|+++|.++++.+++++|++++||||+|||++++++++.... .++++|||+||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHH
Confidence 345556665 788 799999999999999999999999999999966665554322 2678999999999999
Q ss_pred HHHHHHHHhcCCC--CceEEEEECCCCChHhH---HHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 187 QIQQESTKFGASS--KIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 187 q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
|+.+.+..++... ++.+..++|+.+...+. ..+.. .++|+|+||++|.+.+... . ..++++||+||||+|++
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 9999999987654 46677788888766553 33444 4899999999998776542 1 26789999999999986
Q ss_pred -----------CCcHHHHHH----HHH----------------------hcCCCCc-eEEecCCCcHHHHHHHHHhhcCC
Q 010672 261 -----------MGFEPQIKK----ILS----------------------QIRPDRQ-TLYWSATWPKEVEHLARQYLYNP 302 (504)
Q Consensus 261 -----------~~~~~~~~~----il~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~ 302 (504)
++|.+++.. ++. .++..+| .+++|||++... .. ..++.++
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~~-~~l~~~~ 292 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-DR-VKLYREL 292 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-HH-HHHhhcC
Confidence 588887764 332 2234555 567999998531 11 1234566
Q ss_pred eEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHhhCCCCeEEecCCCC
Q 010672 303 YKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~---~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
..+.++... .....+.+.+.......+ ..+.++++.. +..+||||++++. |+.+++.|++.|+++..+|++
T Consensus 293 l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 293 LGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred eEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 666666554 344456666655555544 5677777765 3579999999886 589999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEc----cccccCCCCCC-CCEEEEcCCCC---CHhHHHHHh-------------cccccC
Q 010672 380 QAERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFPG---SLEDYVHRI-------------GRTGRA 438 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~~~vLVaT----~~~~~Gvdi~~-v~~VI~~~~p~---s~~~~~Qri-------------GR~gR~ 438 (504)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||++|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 58999999999 99999999999 888776655 999999
Q ss_pred CCcceEEEEeccccHHHHH
Q 010672 439 GAKGTAYTFFTAANARFAK 457 (504)
Q Consensus 439 g~~g~~~~~~~~~~~~~~~ 457 (504)
|....+++.+...+...++
T Consensus 444 g~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred CCcchhHHHhHHHHHHHHH
Confidence 9887777444444433333
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.4e-39 Score=332.40 Aligned_cols=316 Identities=22% Similarity=0.281 Sum_probs=248.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++.+... ++.++||+||++||.|.++++..+....+
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~lG 172 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEALG 172 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhcC
Confidence 78999999999999998 999999999999999999987654 67899999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc-------------------------CcccccccEEEEcC
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-------------------------NTNLRRVTYLVLDE 254 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-------------------------~~~l~~~~~lV~DE 254 (504)
+++.+++|+.+ .+.+....+++|+++|...| .++|... ......+.+.|+||
T Consensus 173 lsv~~i~gg~~--~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 173 LTVGCVVEDQS--PDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred CEEEEEeCCCC--HHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 99999999975 34555567899999999877 3444322 11235678999999
Q ss_pred ccccc-c--------------C---CcHH--------------------------------HHHHHHHh-----------
Q 010672 255 ADRML-D--------------M---GFEP--------------------------------QIKKILSQ----------- 273 (504)
Q Consensus 255 ah~~~-~--------------~---~~~~--------------------------------~~~~il~~----------- 273 (504)
+|.++ | . .+.. .++.++..
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 99754 0 0 0000 00110000
Q ss_pred -------c------CCC-------------------------------------------------------------Cc
Q 010672 274 -------I------RPD-------------------------------------------------------------RQ 279 (504)
Q Consensus 274 -------~------~~~-------------------------------------------------------------~~ 279 (504)
+ ..+ .+
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 0 000 14
Q ss_pred eEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHH
Q 010672 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCD 358 (504)
Q Consensus 280 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~ 358 (504)
+.+||||.+....++...|..+++.+....+. .....+.+..++..+|...+.+.+.... .+.++||||+|++.++
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 56999999988888888888887665444433 2223444566778889999999887753 3468999999999999
Q ss_pred HHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---CCC-----EEEEcCCCCCHhHHHH
Q 010672 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVH 430 (504)
Q Consensus 359 ~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~---~v~-----~VI~~~~p~s~~~~~Q 430 (504)
.++..|.+.|+++..+||+++. |+..+..|..+...|+|||++++||+||+ +|. +||++++|.|...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 9999999999999999998654 44445556655667999999999999999 666 9999999999999999
Q ss_pred HhcccccCCCcceEEEEeccccH
Q 010672 431 RIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 431 riGR~gR~g~~g~~~~~~~~~~~ 453 (504)
|+||+||.|..|.+++|++..|.
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred hcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999998663
No 64
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.7e-40 Score=338.59 Aligned_cols=384 Identities=22% Similarity=0.292 Sum_probs=284.7
Q ss_pred cccCCCHHHHHHHHHhcCceeccCCCCCCcCCcccC---CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEcc
Q 010672 69 SVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDV---GFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAE 144 (504)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~---~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~l~~a~ 144 (504)
.+..+..++..++..+.++.+ +...|.|...-.-+ .+|.-..+. -.+|.+++.+|++++|.++. ..|+|+|||
T Consensus 58 k~~lp~~~~r~~~~~~eE~~~-P~s~~~~~~~~k~~~isdld~~~rk~--~f~f~~fN~iQS~vFp~aY~SneNMLIcAP 134 (1230)
T KOG0952|consen 58 KFTLPEGSEREDYKTYEEVKI-PASVPMPMDGEKLLSISDLDDVGRKG--FFSFEEFNRIQSEVFPVAYKSNENMLICAP 134 (1230)
T ss_pred eEeccCCccccccCcceEEec-CccCCCccccccceeEEecchhhhhh--cccHHHHHHHHHHhhhhhhcCCCCEEEECC
Confidence 445555566666777776665 33444441111111 233333222 25777899999999999985 568999999
Q ss_pred CCCchHHHHHHHHHHHHhcC--CCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcC
Q 010672 145 TGSGKTLAYLLPAIVHVNAQ--PFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG 222 (504)
Q Consensus 145 TGsGKT~~~~l~~l~~l~~~--~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 222 (504)
||||||.+|++.+|+.+.+. ......+..+++|++|+++||.++.+.+.+-....++.|..++|++...... ...
T Consensus 135 TGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~ 211 (1230)
T KOG0952|consen 135 TGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IAD 211 (1230)
T ss_pred CCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHh
Confidence 99999999999999888752 2233456889999999999999999999887778899999999988654433 345
Q ss_pred CcEEEeChHHHHHHHHccC----cccccccEEEEcCccccccCCcHHHHHHHHHhc-------CCCCceEEecCCCcHHH
Q 010672 223 VEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKEV 291 (504)
Q Consensus 223 ~~Iiv~T~~~l~~~l~~~~----~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-------~~~~~~i~~SAT~~~~~ 291 (504)
++|+|+||+++ |.+.+.. ..++.+.+||+||+|.+.+. .++.++.|+.+. ....+++++|||+|+ .
T Consensus 212 tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN-~ 288 (1230)
T KOG0952|consen 212 TQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLPN-Y 288 (1230)
T ss_pred cCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC-H
Confidence 89999999998 5554432 23577899999999988776 488888887664 367789999999997 8
Q ss_pred HHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChh---HHHH-----HHHHHHHhhcCCCeEEEEeCCcccHHHHHHH
Q 010672 292 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYN-----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 363 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~-----~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~ 363 (504)
++++..+..+|..-.+.......+..+.+.+...... ...+ ...+.++.+.++.+++|||.++..+...|+.
T Consensus 289 eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~ 368 (1230)
T KOG0952|consen 289 EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKK 368 (1230)
T ss_pred HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHH
Confidence 8999988888665554444445566666666554332 1111 1122334455678999999999999999998
Q ss_pred HhhC----C-------------------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE---
Q 010672 364 LRMD----G-------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI--- 417 (504)
Q Consensus 364 L~~~----~-------------------~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI--- 417 (504)
|.+. | .....+|++|...+|..+.+.|..|.++||+||+++++|||+|+-.++|
T Consensus 369 l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT 448 (1230)
T KOG0952|consen 369 LRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGT 448 (1230)
T ss_pred HHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCC
Confidence 8652 1 1244789999999999999999999999999999999999999877666
Q ss_pred -EcCCCC------CHhHHHHHhcccccCC--CcceEEEEeccccHHHHHHHHH
Q 010672 418 -NYDFPG------SLEDYVHRIGRTGRAG--AKGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 418 -~~~~p~------s~~~~~QriGR~gR~g--~~g~~~~~~~~~~~~~~~~l~~ 461 (504)
.||... .+.+.+|.+|||||.. ..|.++++.+.+...++..|+.
T Consensus 449 ~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~ 501 (1230)
T KOG0952|consen 449 QVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT 501 (1230)
T ss_pred cccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc
Confidence 344332 5789999999999954 5699999998887776665554
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.3e-39 Score=342.29 Aligned_cols=303 Identities=19% Similarity=0.296 Sum_probs=231.5
Q ss_pred HHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceEE
Q 010672 126 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKST 204 (504)
Q Consensus 126 Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 204 (504)
-.+.+..+.++++++++|+||||||++|.++++..... ..+++|++|||++|.|+.+.+.+ ++...+..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 34556667778999999999999999999988865321 34799999999999999998864 5555566666
Q ss_pred EEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc-cccCCcH-HHHHHHHHhcCCCCceEE
Q 010672 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFE-PQIKKILSQIRPDRQTLY 282 (504)
Q Consensus 205 ~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~-~~~~~~~-~~~~~il~~~~~~~~~i~ 282 (504)
...++... .....+|+|+||++|.+++.+ ...+.++++|||||+|. .++.++. ..+..++..++++.|+++
T Consensus 82 y~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 82 YRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 65555432 123457999999999998876 45789999999999995 5554432 234556667788999999
Q ss_pred ecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHH-----HHHHHHHhhcCCCeEEEEeCCcccH
Q 010672 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN-----KLVKLLEDIMDGSRILIFMDTKKGC 357 (504)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~~lIf~~s~~~~ 357 (504)
||||++.+. + ..++.++..+.+... ...+.+.+.......+.. .+..++.. ..+.+||||+++.++
T Consensus 155 mSATl~~~~--l-~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei 225 (812)
T PRK11664 155 MSATLDNDR--L-QQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEI 225 (812)
T ss_pred EecCCCHHH--H-HHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHH
Confidence 999998642 3 455555444433221 123444444444333332 22233322 357899999999999
Q ss_pred HHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCC-----------
Q 010672 358 DQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG----------- 423 (504)
Q Consensus 358 ~~l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~----------- 423 (504)
+.+++.|++ .++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+++.+.
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 999999987 578899999999999999999999999999999999999999999999999988764
Q ss_pred -------CHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 424 -------SLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 424 -------s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
|.++|+||.|||||. +.|.||.++++.+.
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 79999999997643
No 66
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.6e-38 Score=349.23 Aligned_cols=293 Identities=19% Similarity=0.313 Sum_probs=221.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH
Q 010672 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (504)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 187 (504)
.++.+.+.+....+|+++|+.+++.++.|++++++||||+|||+ |.+|++..+.. .++++|||+||++||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHH
Confidence 34555565555568999999999999999999999999999997 66666665543 26789999999999999
Q ss_pred HHHHHHHhcCCCCceEE---EEECCCCChHh---HHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 188 IQQESTKFGASSKIKST---CIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 188 ~~~~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
+++.+.++....++.+. +++|+.+...+ ...+.. +++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 99999999876665543 46687766543 233333 58999999999988776522 1 799999999999998
Q ss_pred -----------CCcHHH-HHHHHH----------------------hcCCCCc--eEEecCC-CcHHHHHHHHHhhcCCe
Q 010672 261 -----------MGFEPQ-IKKILS----------------------QIRPDRQ--TLYWSAT-WPKEVEHLARQYLYNPY 303 (504)
Q Consensus 261 -----------~~~~~~-~~~il~----------------------~~~~~~~--~i~~SAT-~~~~~~~~~~~~~~~~~ 303 (504)
+||..+ +..++. .++...| ++++||| +|..+.. .++.+..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHccccc
Confidence 677764 454432 3334445 5678999 5654432 2344555
Q ss_pred EEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCc---ccHHHHHHHHhhCCCCeEEecCCCCH
Q 010672 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK---KGCDQITRQLRMDGWPALSIHGDKSQ 380 (504)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~---~~~~~l~~~L~~~~~~~~~ih~~~~~ 380 (504)
.+.++... ....++.+.+..... +...+.++++.. +.++||||+++ +.|+.+++.|++.|+++..+||++++
T Consensus 291 ~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 291 GFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred ceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 55555443 333445555543332 245567777664 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHHhcCCCcEEEE----ccccccCCCCCC-CCEEEEcCCCC
Q 010672 381 AERDWVLSEFKAGKSPIMTA----TDVAARGLDVKD-VKYVINYDFPG 423 (504)
Q Consensus 381 ~~r~~~~~~f~~g~~~vLVa----T~~~~~Gvdi~~-v~~VI~~~~p~ 423 (504)
.++++|++|+++|||| |++++||||+|+ +++|||||+|.
T Consensus 366 ----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 489999999999 89999988774
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.5e-38 Score=327.26 Aligned_cols=319 Identities=20% Similarity=0.269 Sum_probs=241.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
|+ .|+++|..+++.+.+|+ |+.+.||+|||++|++|++..... ++.++|++||++||.|.++++..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 89999999999888776 999999999999999999876665 67799999999999999999999999
Q ss_pred CCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc------CcccccccEEEEcCccccc-cCC-------
Q 010672 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG------- 262 (504)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lV~DEah~~~-~~~------- 262 (504)
..++.+.++.|+.+...+.+ ....++|+++||++| .+++... ...+..+.++|+||||.|+ |..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 99999999999987433333 345689999999998 4555432 2356788999999999865 100
Q ss_pred --------cHHHHHHHHHhcCC--------C-------------------------------------------------
Q 010672 263 --------FEPQIKKILSQIRP--------D------------------------------------------------- 277 (504)
Q Consensus 263 --------~~~~~~~il~~~~~--------~------------------------------------------------- 277 (504)
+......++..+.. .
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 01111111111110 0
Q ss_pred ------------------------------------------------------------CceEEecCCCcHHHHHHHHH
Q 010672 278 ------------------------------------------------------------RQTLYWSATWPKEVEHLARQ 297 (504)
Q Consensus 278 ------------------------------------------------------------~~~i~~SAT~~~~~~~~~~~ 297 (504)
..+.+||+|...+..++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 13345566654444444333
Q ss_pred hhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecC
Q 010672 298 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 376 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~ 376 (504)
|..+-+. +.... .............+..+|...+.+.+... ....++||||+|++.++.++..|.+.++++..+|+
T Consensus 384 Y~l~v~~--IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 YNMEVVQ--IPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred hCCcEEE--CCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 3322221 11111 11111112234456788999999888764 45679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC---CCCC-----EEEEcCCCCCHhHHHHHhcccccCCCcceEEEEe
Q 010672 377 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV---KDVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 448 (504)
Q Consensus 377 ~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi---~~v~-----~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~ 448 (504)
.+.+.++..+...++.| .|+|||++++||+|| |+|. +||++++|.|...|+||+||+||.|..|.+++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99999988888887766 699999999999999 6898 9999999999999999999999999999999999
Q ss_pred ccccH
Q 010672 449 TAANA 453 (504)
Q Consensus 449 ~~~~~ 453 (504)
+..|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 98653
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.3e-37 Score=334.29 Aligned_cols=323 Identities=25% Similarity=0.317 Sum_probs=242.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..++++||.+++..++.+ ++|+++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 347899999999988886 99999999999999999877776632 2567999999999999999999997655
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
....+..+.|+..... ...+..+++|+|+||+.+...+......+.++++|||||||++........+........+.+
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4457777777765543 344455679999999999888777777888999999999999875543334444444445677
Q ss_pred ceEEecCCCcHH---HHHHHHHhhcCCeEEE--------------------EcCCC------------------------
Q 010672 279 QTLYWSATWPKE---VEHLARQYLYNPYKVI--------------------IGSPD------------------------ 311 (504)
Q Consensus 279 ~~i~~SAT~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~------------------------ 311 (504)
++++||||+... +..+...+....+.+. +....
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997422 2222222211110000 00000
Q ss_pred cc--cc------------cceee---------------------------------------------------------
Q 010672 312 LK--AN------------HAIRQ--------------------------------------------------------- 320 (504)
Q Consensus 312 ~~--~~------------~~~~~--------------------------------------------------------- 320 (504)
.. .. ..+..
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 00000
Q ss_pred ---------------eeeecChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCC-----
Q 010672 321 ---------------HVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD----- 377 (504)
Q Consensus 321 ---------------~~~~~~~~~k~~~l~~~l~~~~---~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~----- 377 (504)
...+.....|...|.++|.+.. .+.++||||++++.|+.+++.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 0000122346666677776643 45699999999999999999999999999999886
Q ss_pred ---CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 378 ---KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 378 ---~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
+++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+. |.+++++...
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999854 8888888765
No 69
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-39 Score=302.72 Aligned_cols=309 Identities=30% Similarity=0.474 Sum_probs=244.6
Q ss_pred CEEEEEcccHHHHHHHHHHHHHh---cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccE
Q 010672 173 PIVLVLAPTRELAVQIQQESTKF---GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (504)
Q Consensus 173 ~~vlil~Pt~~L~~q~~~~~~~~---~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (504)
|.++|+-|+++|++|.+..+++| ..+..++...+.||...+.|...+..+.+|+|+||+++.+.+.+....++.+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 67999999999999999966665 444556777889999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCcHHHHHHHHHhcC------CCCceEEecCCCcH-HHHHHHHHhhcCCeEEEEcCCCcccccceeeee
Q 010672 250 LVLDEADRMLDMGFEPQIKKILSQIR------PDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV 322 (504)
Q Consensus 250 lV~DEah~~~~~~~~~~~~~il~~~~------~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (504)
+|+||++.++..++...+..+..+++ ...|.+..|||+.. ++..+.+..+.-|.-+.+...+ ..+..+.+.+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVV 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccce
Confidence 99999999999998888888877764 35788999999742 3445555555555555544433 2222222222
Q ss_pred eecCh------------------------------hHHHHHHHH---------HHHhhcCCCeEEEEeCCcccHHHHHHH
Q 010672 323 DIVSE------------------------------SQKYNKLVK---------LLEDIMDGSRILIFMDTKKGCDQITRQ 363 (504)
Q Consensus 323 ~~~~~------------------------------~~k~~~l~~---------~l~~~~~~~~~lIf~~s~~~~~~l~~~ 363 (504)
..+.. .+....... .++++ ...+.||||.|+..|+.|.++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHH
Confidence 21110 011111111 12222 234899999999999999999
Q ss_pred HhhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCC
Q 010672 364 LRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 440 (504)
Q Consensus 364 L~~~~---~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~ 440 (504)
+++.| +.++++||+..+.+|.+-++.|++++.++||||+++++|+||..+-+||+..+|.+...|+|||||+||+.+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 98864 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecc--------------------------------ccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCC
Q 010672 441 KGTAYTFFTA--------------------------------ANARFAKELITILEEAGQKVSPELAAMGRGAPP 483 (504)
Q Consensus 441 ~g~~~~~~~~--------------------------------~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 483 (504)
.|.++.++.. ++...+.++.+.|.-..+++.+.+.-......|
T Consensus 605 mglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdg 679 (725)
T KOG0349|consen 605 MGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDG 679 (725)
T ss_pred cceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCC
Confidence 9999987642 346778888888888888888888777666554
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=316.64 Aligned_cols=334 Identities=25% Similarity=0.281 Sum_probs=244.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
+++.......--....++.||.+.+..+| ++|+|+++|||+|||+++...++.|+...+ ..+|++++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 34444333333345589999999999999 999999999999999999998999988765 46799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcc-cccccEEEEcCcccccc-CCc
Q 010672 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-LRRVTYLVLDEADRMLD-MGF 263 (504)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~-l~~~~~lV~DEah~~~~-~~~ 263 (504)
.|+.+.+..++.. ..+....||.........+....+|+|+||+.|.+.|.+.... ++.|.++||||||+... ..|
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999888888765 5666677775544444566667899999999999888775443 58999999999998764 446
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHh---hcC----------------------C----------------
Q 010672 264 EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY---LYN----------------------P---------------- 302 (504)
Q Consensus 264 ~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~----------------------~---------------- 302 (504)
...++..+..-....|+|++|||+.++........ +.+ |
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 66666777766666699999999654332221110 000 0
Q ss_pred --------------eEEEEcC--CC-------cccccc--eeee--e------------------ee-------------
Q 010672 303 --------------YKVIIGS--PD-------LKANHA--IRQH--V------------------DI------------- 324 (504)
Q Consensus 303 --------------~~~~~~~--~~-------~~~~~~--~~~~--~------------------~~------------- 324 (504)
+...... .+ ...... -.+. + .+
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000 00 000000 0000 0 00
Q ss_pred ---------------------------------cChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHhh--
Q 010672 325 ---------------------------------VSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRM-- 366 (504)
Q Consensus 325 ---------------------------------~~~~~k~~~l~~~l~~~~---~~~~~lIf~~s~~~~~~l~~~L~~-- 366 (504)
.....|+..+.+.+.+.. ++.++||||.++..|+.|...|.+
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 011345555555555443 345999999999999999999973
Q ss_pred -CCCCeEEec--------CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhccccc
Q 010672 367 -DGWPALSIH--------GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437 (504)
Q Consensus 367 -~~~~~~~ih--------~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR 437 (504)
.+++...+- .+|++.++.++++.|++|+++|||||+++++|+||+.|+.||.||...|+..++||.|| ||
T Consensus 438 ~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR 516 (746)
T KOG0354|consen 438 ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR 516 (746)
T ss_pred hcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc
Confidence 234444332 37999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCcceEEEEecc
Q 010672 438 AGAKGTAYTFFTA 450 (504)
Q Consensus 438 ~g~~g~~~~~~~~ 450 (504)
+ +.|.++++++.
T Consensus 517 a-~ns~~vll~t~ 528 (746)
T KOG0354|consen 517 A-RNSKCVLLTTG 528 (746)
T ss_pred c-cCCeEEEEEcc
Confidence 8 88999999983
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3e-37 Score=320.40 Aligned_cols=319 Identities=18% Similarity=0.194 Sum_probs=234.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.++|+|.|++..+..++..++.++||+|||++|++|++.+.+. ++.++||+|+++||.|+.+++..+....+
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 4566666676666655668999999999999999998776654 45699999999999999999999998999
Q ss_pred ceEEEEECCCC---ChHhHHHHhcCCcEEEeChHHH-HHHHHc------cCcccccccEEEEcCcccccc-CC-------
Q 010672 201 IKSTCIYGGVP---KGPQVRDLQKGVEIVIATPGRL-IDMLES------HNTNLRRVTYLVLDEADRMLD-MG------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~---~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~------~~~~l~~~~~lV~DEah~~~~-~~------- 262 (504)
+.+.+++++.. ..........+++|+++||++| .+++.. ....+..+.++|+||||.|+- ..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99988877632 2233344446799999999999 555532 234467899999999998751 10
Q ss_pred --------cHHHHHHHHHhcCCC---------------------------------------------------------
Q 010672 263 --------FEPQIKKILSQIRPD--------------------------------------------------------- 277 (504)
Q Consensus 263 --------~~~~~~~il~~~~~~--------------------------------------------------------- 277 (504)
.......++..+.+.
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 001111111111110
Q ss_pred ------------------------------------------------------------CceEEecCCCcHHHHHHHHH
Q 010672 278 ------------------------------------------------------------RQTLYWSATWPKEVEHLARQ 297 (504)
Q Consensus 278 ------------------------------------------------------------~~~i~~SAT~~~~~~~~~~~ 297 (504)
.++.+||+|...+..++...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 13446666654444444443
Q ss_pred hhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecC
Q 010672 298 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 376 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~ 376 (504)
|..+-+ .+.... ...........+.+..+|...+.+.+.+. ..+.++||||+|++.++.++..|.+.++++..+|+
T Consensus 380 Y~l~v~--~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 380 YSLSVV--KIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred hCCCEE--EcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 322211 111111 11111122244566778999898888764 45679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---------CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEE
Q 010672 377 DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447 (504)
Q Consensus 377 ~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~---------~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~ 447 (504)
.+.+.++..+..+++.| .|+|||++++||+||+ ++.+|+++++|....+ +||+||+||.|.+|.++.|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999988888777776 6999999999999999 9999999999998777 9999999999999999999
Q ss_pred eccccH
Q 010672 448 FTAANA 453 (504)
Q Consensus 448 ~~~~~~ 453 (504)
++..|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 998654
No 72
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=321.09 Aligned_cols=404 Identities=18% Similarity=0.214 Sum_probs=298.7
Q ss_pred CCCCCCCCCCCccccCcccCccccCCCHHHHHHHHHhcCceeccCCCCCCcCCccc----CCCCHHHHHHHHHcCCCCCc
Q 010672 48 PRKLDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRD----VGFPDYVMQEISKAGFFEPT 123 (504)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~----~~l~~~~~~~l~~~~~~~~~ 123 (504)
++..|++++.+-+.++.+.+..+..+...-...-..+.++.+ +...|.|+..-++ ..+|+|-..++ .|..+++
T Consensus 235 ~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhV-Pa~~~~pf~~~Ekl~~iselP~Wnq~aF--~g~~sLN 311 (1674)
T KOG0951|consen 235 RPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHV-PAPSYFPFHKEEKLVKISELPKWNQPAF--FGKQSLN 311 (1674)
T ss_pred CcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeC-CCCCCCCCCccceeEeecCCcchhhhhc--ccchhhh
Confidence 334777777777777777777666665543333333345554 3333344333333 25788888777 4556799
Q ss_pred HHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC---CCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 124 PIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 124 ~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~---~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
++|....+.++.+ .++++|||||+|||.++++.+|+.+........+ ...+++|++|.++|+..|...+.+.....
T Consensus 312 rIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~ 391 (1674)
T KOG0951|consen 312 RIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL 391 (1674)
T ss_pred HHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc
Confidence 9999999999876 4799999999999999999999998775432211 24579999999999999999999988899
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccC---cccccccEEEEcCccccccCCcHHHHHHHHHhc--
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-- 274 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~---~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-- 274 (504)
+++|...+|+.....+.. .+..|+||||+++ |.+.++. ...+-++++|+||+|.+.|. .++.++.|+.+.
T Consensus 392 GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r 466 (1674)
T KOG0951|consen 392 GITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFR 466 (1674)
T ss_pred CcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHH
Confidence 999999999876544332 2468999999998 6665542 33456889999999987766 488888887664
Q ss_pred -----CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHH-------HHHHHHHHhhc
Q 010672 275 -----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-------NKLVKLLEDIM 342 (504)
Q Consensus 275 -----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~~l~~~~ 342 (504)
....+++++|||+|+ ..+.+.....++..+..-. ....+..+.|.+.-+.+.... +...+.+-++.
T Consensus 467 ~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd-~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a 544 (1674)
T KOG0951|consen 467 RSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFD-SSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA 544 (1674)
T ss_pred HhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccC-cccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhC
Confidence 246789999999997 6677776666663333222 224555666666555443221 22333344444
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh-------------------------------------CCCCeEEecCCCCHHHHHH
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRM-------------------------------------DGWPALSIHGDKSQAERDW 385 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~ih~~~~~~~r~~ 385 (504)
..++||||+.+++++.+.|+.++. ..+....+|++|+..+|+.
T Consensus 545 gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~ 624 (1674)
T KOG0951|consen 545 GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDREL 624 (1674)
T ss_pred CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHH
Confidence 557999999999999888888763 1255678999999999999
Q ss_pred HHHHHhcCCCcEEEEccccccCCCCCCCCEEE----EcCC------CCCHhHHHHHhcccccCCC--cceEEEEeccccH
Q 010672 386 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----NYDF------PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAANA 453 (504)
Q Consensus 386 ~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI----~~~~------p~s~~~~~QriGR~gR~g~--~g~~~~~~~~~~~ 453 (504)
+++.|.+|.++|||+|.+++||||+|..+++| .||+ +-++.+..||+|||||.+- .|..+++....+.
T Consensus 625 ~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 625 VEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred HHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHh
Confidence 99999999999999999999999999988888 3554 3479999999999999764 4788888888887
Q ss_pred HHHHHHHH
Q 010672 454 RFAKELIT 461 (504)
Q Consensus 454 ~~~~~l~~ 461 (504)
.+...+++
T Consensus 705 qyyls~mn 712 (1674)
T KOG0951|consen 705 QYYLSLMN 712 (1674)
T ss_pred hhhHHhhh
Confidence 77666554
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.8e-36 Score=311.23 Aligned_cols=316 Identities=22% Similarity=0.257 Sum_probs=242.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|..+...+..|+ |+.++||+|||++|++|++..... +..|+|++||++||.|.++++..+....+
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 78888888888877665 999999999999999999655443 44599999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc------CcccccccEEEEcCcccccc-CCcH--------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLD-MGFE-------- 264 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lV~DEah~~~~-~~~~-------- 264 (504)
+++.+++|+.+....... ..++|+++||++| .+++... ...+..+.++|+||+|+|+- ....
T Consensus 126 Lsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 126 LSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred CeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 999999999876443333 3589999999999 8888665 34678899999999998651 0000
Q ss_pred ---------------------------------------HHHHHHH------------------Hhc------CCC----
Q 010672 265 ---------------------------------------PQIKKIL------------------SQI------RPD---- 277 (504)
Q Consensus 265 ---------------------------------------~~~~~il------------------~~~------~~~---- 277 (504)
..++.++ ..+ ..+
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0011100 000 000
Q ss_pred ---------------------------------------------------------CceEEecCCCcHHHHHHHHHhhc
Q 010672 278 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 300 (504)
Q Consensus 278 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 300 (504)
.++.+||+|...+..++...|..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 14457777776655566555544
Q ss_pred CCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+-+.+ ....... ........+.+..+|...+.+.+.+ +..+.++||||+|+..++.+++.|.+.++++..+|+.
T Consensus 364 ~vv~I--Ptnkp~~-R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVVV--PTNRPVI-RKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEEe--CCCCCee-eeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 43322 1111011 1112223345667788888776644 4556799999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCCCC-------CCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEecccc
Q 010672 380 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKD-------VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~-------v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~ 452 (504)
+.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++..|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999999876
Q ss_pred H
Q 010672 453 A 453 (504)
Q Consensus 453 ~ 453 (504)
.
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 4
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1e-35 Score=294.32 Aligned_cols=291 Identities=17% Similarity=0.181 Sum_probs=201.4
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC----
Q 010672 125 IQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS---- 198 (504)
Q Consensus 125 ~Q~~~i~~~l~~~~--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~---- 198 (504)
+|.++++.+.++.+ ++++||||||||++|++|++.. ..++++++|+++|++|+.+.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998842 234899999999999999998887532
Q ss_pred CCceEEEEECCCCChH-hH-------------------HHHhcCCcEEEeChHHHHHHHHcc---C-----cccccccEE
Q 010672 199 SKIKSTCIYGGVPKGP-QV-------------------RDLQKGVEIVIATPGRLIDMLESH---N-----TNLRRVTYL 250 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~-~~-------------------~~~~~~~~Iiv~T~~~l~~~l~~~---~-----~~l~~~~~l 250 (504)
.+..+..+.|....+. .. ......+.|+++||+.|..++... . ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 3455555555422110 00 001235788999999986554321 1 125789999
Q ss_pred EEcCccccccCC-----cHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHh--hcCCeEEEEcCCCc-----------
Q 010672 251 VLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDL----------- 312 (504)
Q Consensus 251 V~DEah~~~~~~-----~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 312 (504)
||||+|.+.... +......++.......+++++|||+++.+.+..... +..++....+..-.
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999976433 112333444444445799999999999887777665 44454333222000
Q ss_pred c------cccceeeeeeecChhHHHHH---HHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhCC--CCeEEecCCC
Q 010672 313 K------ANHAIRQHVDIVSESQKYNK---LVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDG--WPALSIHGDK 378 (504)
Q Consensus 313 ~------~~~~~~~~~~~~~~~~k~~~---l~~~l~~~---~~~~~~lIf~~s~~~~~~l~~~L~~~~--~~~~~ih~~~ 378 (504)
. ....+.+.+.. ....+... +.+.+.+. ..++++||||+|++.|+.++..|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 00123333322 22223332 33333221 245689999999999999999999864 5788899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccc
Q 010672 379 SQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 436 (504)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~g 436 (504)
++.+|..+ ++.+|||||+++++|||+|.+ +|| ++ |.++++|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99988754 378899999999999999986 566 45 889999999999997
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.1e-36 Score=309.83 Aligned_cols=320 Identities=19% Similarity=0.220 Sum_probs=223.7
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..|+|||.+++..+.. + +..++++|||+|||++++.. +..+ ..++|||||+.+|+.||.+++.+|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~a-a~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTA-ACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHH-HHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4789999999998874 3 36899999999999997653 3333 2349999999999999999999986
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc--------CcccccccEEEEcCccccccCCcHHHHH
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--------~~~l~~~~~lV~DEah~~~~~~~~~~~~ 268 (504)
......+..++|+.... ......|+|+|++.+.....+. .+.-..+++||+||||++. ...+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHH
Confidence 54445566666543221 1223689999998875321110 1222468899999999985 34566
Q ss_pred HHHHhcCCCCceEEecCCCcHHHHH--HHHHhhcCCeEEEEcCCCccccccee--------------------------e
Q 010672 269 KILSQIRPDRQTLYWSATWPKEVEH--LARQYLYNPYKVIIGSPDLKANHAIR--------------------------Q 320 (504)
Q Consensus 269 ~il~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~ 320 (504)
.++..+. ....++||||+..+-.. ... ++..|......-.++.....+. .
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 6666663 45689999998632211 111 1222322211111100000000 0
Q ss_pred eeeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEE
Q 010672 321 HVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIM 398 (504)
Q Consensus 321 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~vL 398 (504)
.........|+..+..+++.+. .+.++||||.+...++.+++.|. +..+||++++.+|..++++|+++ .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 0001123445556555665542 55699999999999999988873 45689999999999999999875 88999
Q ss_pred EEccccccCCCCCCCCEEEEcCCC-CCHhHHHHHhcccccCCCcceE-------EEEeccc--cHHHHHHHHHHHHHh
Q 010672 399 TATDVAARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTA-------YTFFTAA--NARFAKELITILEEA 466 (504)
Q Consensus 399 VaT~~~~~Gvdi~~v~~VI~~~~p-~s~~~~~QriGR~gR~g~~g~~-------~~~~~~~--~~~~~~~l~~~l~~~ 466 (504)
|+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+ |.|++.+ +..+..+-..+|.+.
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 999999999999999999999987 5999999999999999776664 7888876 455666666666654
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=5.1e-35 Score=313.56 Aligned_cols=334 Identities=23% Similarity=0.342 Sum_probs=258.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
....+..++.+.++..|++||.+|+..+.+|+++|++.+||||||.+|++|++.++...+ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 345568888899999999999999999999999999999999999999999999999864 33789999999999
Q ss_pred HHHHHHHHHhcCCCC--ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccC----cccccccEEEEcCccccc
Q 010672 186 VQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRML 259 (504)
Q Consensus 186 ~q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~----~~l~~~~~lV~DEah~~~ 259 (504)
+.+.+.+.++....+ +......|++........+.+.++|+++||++|..++.... ..++++++||+||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999877766 66666677766655556778889999999999977554432 346779999999999754
Q ss_pred cCCcHHHHHHHHHh-------cCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC------
Q 010672 260 DMGFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ 326 (504)
Q Consensus 260 ~~~~~~~~~~il~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 326 (504)
.. |+..+..+++. ....+|+|+.|||+.+ -.+++..+........+.... ........+...+
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELA 284 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhh
Confidence 32 34444444333 2468899999999976 556667776666655332221 1222222222222
Q ss_pred ---hhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH----HHHhhCC----CCeEEecCCCCHHHHHHHHHHHhcCC
Q 010672 327 ---ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT----RQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGK 394 (504)
Q Consensus 327 ---~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~----~~L~~~~----~~~~~ih~~~~~~~r~~~~~~f~~g~ 394 (504)
...+...+..++... ..+-++|+|+.+++.++.+. +.+...+ ..+..+++++...+|..++..|+.|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 113333333333332 34569999999999999997 4444445 56888999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCCCEEEEcCCCC-CHhHHHHHhcccccCCCcceEEEEec
Q 010672 395 SPIMTATDVAARGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 395 ~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~-s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
+.++++|++++-|+||-+++.||.+..|. +..++.||.||+||.++.+..+++..
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999 89999999999999987776666665
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.5e-35 Score=311.59 Aligned_cols=332 Identities=23% Similarity=0.312 Sum_probs=263.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 114 ISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 114 l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
....|...++|-|.++|...+.|+++++.+|||.||+++|.+|++.. +...|||.|..+|.+.+...+.
T Consensus 257 ~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 257 KEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhh
Confidence 34578999999999999999999999999999999999999998854 4579999999999766655553
Q ss_pred HhcCCCCceEEEEECCCCChHhH---HHHhc---CCcEEEeChHHHHHH--HHccCccccc---ccEEEEcCccccccCC
Q 010672 194 KFGASSKIKSTCIYGGVPKGPQV---RDLQK---GVEIVIATPGRLIDM--LESHNTNLRR---VTYLVLDEADRMLDMG 262 (504)
Q Consensus 194 ~~~~~~~~~~~~~~gg~~~~~~~---~~~~~---~~~Iiv~T~~~l~~~--l~~~~~~l~~---~~~lV~DEah~~~~~~ 262 (504)
..+|....+.++.....+. +.+.. .++|+..||+++... +......+.. +.++|+||||...+|+
T Consensus 326 ----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 ----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred ----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3457778888887665432 33333 478999999998642 2222223333 8899999999999987
Q ss_pred --cHHHHHHHHHhc--CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHH
Q 010672 263 --FEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (504)
Q Consensus 263 --~~~~~~~il~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (504)
|++.++.+.... .+...+|.+|||....+.+.+-..+.-.-...+... ....++...+...........+...+
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~~~~~~~~~~~~ 479 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTDKDALLDILEES 479 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccCccchHHHHHHh
Confidence 888888764332 245789999999988887665555543322222222 23344444444444445556666677
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE
Q 010672 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN 418 (504)
Q Consensus 339 ~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~ 418 (504)
+...+....||||.++++|+.++..|+..++.+..+|++|+..+|..+..+|..++++|+|||=+++.|||-|+|+.|||
T Consensus 480 ~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 480 KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE
Confidence 77778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010672 419 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (504)
Q Consensus 419 ~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (504)
|.+|.+++.|.|-+|||||.|....|++|+...|..-++.++..
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999876665555443
No 78
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4e-34 Score=311.12 Aligned_cols=299 Identities=23% Similarity=0.329 Sum_probs=213.0
Q ss_pred HHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc----cHHHHHHHHHHHHH-hcCCCC
Q 010672 126 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP----TRELAVQIQQESTK-FGASSK 200 (504)
Q Consensus 126 Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P----t~~L~~q~~~~~~~-~~~~~~ 200 (504)
..+.+..+..++.++++|+||||||+ .+|.+..... .+....+++.-| +++||.++.+++.. ++...+
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-----~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-----RGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-----CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 44555666677778899999999999 4674433221 111224555567 56888888888874 444333
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc-ccccCCcHHH-HHHHHHhcCCCC
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDR 278 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah-~~~~~~~~~~-~~~il~~~~~~~ 278 (504)
+.+ .... ....+++|+|+||++|++.+..+. .++++++||||||| ++++.+|... +..++. .+++.
T Consensus 152 Y~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdl 219 (1294)
T PRK11131 152 YKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDL 219 (1294)
T ss_pred eee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCCCc
Confidence 322 1111 113467999999999999988654 48999999999999 6889887653 333332 24688
Q ss_pred ceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecCh------hHHHHHHHHHHHhh--cCCCeEEEE
Q 010672 279 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE------SQKYNKLVKLLEDI--MDGSRILIF 350 (504)
Q Consensus 279 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~~lIf 350 (504)
|+|+||||++. ..+.+.+...|+ +.+.... ..+...+..... .+....+++.+..+ ...+.+|||
T Consensus 220 KvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 99999999975 466666655564 3332211 123333332211 23344444444332 234689999
Q ss_pred eCCcccHHHHHHHHhhCCCC---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC------
Q 010672 351 MDTKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------ 421 (504)
Q Consensus 351 ~~s~~~~~~l~~~L~~~~~~---~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~------ 421 (504)
|+++.+++.+++.|++.+++ +..+||++++++|..+++. .|..+|||||+++++|||||+|++||+++.
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999987765 6789999999999999886 578899999999999999999999999863
Q ss_pred ---------C---CCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 422 ---------P---GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 422 ---------p---~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
| .|.++|.||+|||||. ..|.||.++++.+.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 3568999999999999 89999999997653
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3e-34 Score=269.07 Aligned_cols=329 Identities=22% Similarity=0.343 Sum_probs=242.0
Q ss_pred HHHHHHH-cCCCC-CcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 110 VMQEISK-AGFFE-PTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 110 ~~~~l~~-~~~~~-~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
+..+|++ .|+.+ -++.|++|+..+..+ +|+.+++|||+||+++|.+|+|.+ +...||+.|..+|..
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 3444543 35544 378999999987764 689999999999999999999976 447999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHh---cCCcEEEeChHHHH-----HHHHccCcccccccEEEEcCc
Q 010672 187 QIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ---KGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDEA 255 (504)
Q Consensus 187 q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~---~~~~Iiv~T~~~l~-----~~l~~~~~~l~~~~~lV~DEa 255 (504)
.+.+.+.++. +++..+.+-.+..+. +.++. ....++..||+... +.|+. ..+-..+.|+|+|||
T Consensus 76 DQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechh
Confidence 8888888764 333333333332222 22332 34578999998742 33322 222345789999999
Q ss_pred cccccCC--cHHHHHHHH--HhcCCCCceEEecCCCcHHHHHHHH--HhhcCCeEEEEcCCCcccccceeeeeeec-Chh
Q 010672 256 DRMLDMG--FEPQIKKIL--SQIRPDRQTLYWSATWPKEVEHLAR--QYLYNPYKVIIGSPDLKANHAIRQHVDIV-SES 328 (504)
Q Consensus 256 h~~~~~~--~~~~~~~il--~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 328 (504)
|.+.+|| |++.+..+= +..-++...+.+|||-...+++... ..+.+|+.+.-.... .. ++-..+.+. .-+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R~--NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-RD--NLFYDNHMKSFIT 227 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-hh--hhhHHHHHHHHhh
Confidence 9999987 888777652 2333778899999999888876443 345667654432221 11 111101000 012
Q ss_pred HHHHHHHHHHHhhc------------CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Q 010672 329 QKYNKLVKLLEDIM------------DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396 (504)
Q Consensus 329 ~k~~~l~~~l~~~~------------~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~ 396 (504)
+-+..|.++..... ..+..||||.|+++|+.++-.|...|+++..+|+++...+|.++.++|.+++.+
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 23344444332211 123689999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHH
Q 010672 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 457 (504)
Q Consensus 397 vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~ 457 (504)
|++||..++.|||-|+|++|||++.|.|+.-|.|--||+||.|....|-+++...|.+.+.
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999988765433
No 80
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.8e-32 Score=272.30 Aligned_cols=339 Identities=21% Similarity=0.274 Sum_probs=258.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
....+++.+.+.=-++||..|++++..+... -+-|+++..|||||++++++++..+.. |..+.+.+
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEec
Confidence 3445555555444559999999999998753 258999999999999999999888766 78899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHhcC-CcEEEeChHHHHHHHHccCcccccccEEEEcCc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEa 255 (504)
||.-||+|.++.+.++....++++..+.|....... ...+.++ .+|+|+| +.|..+...+.++.++|+||=
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 999999999999999999999999999998765443 3344444 8999999 444556777899999999999
Q ss_pred cccccCCcHHHHHHHHHhcCC-CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 256 DRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
|| |+-.-+..+..-.. .+.+++||||+-+-. ++-....+-..-.+.... .-...+.-.+ +..+ +...+
T Consensus 394 HR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP-~GRkpI~T~~--i~~~-~~~~v 462 (677)
T COG1200 394 HR-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELP-PGRKPITTVV--IPHE-RRPEV 462 (677)
T ss_pred cc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCC-CCCCceEEEE--eccc-cHHHH
Confidence 99 56666666666556 789999999975533 333344443332333222 1112222222 2222 33333
Q ss_pred HH-HHHhhcCCCeEEEEeCCccc--------HHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 335 VK-LLEDIMDGSRILIFMDTKKG--------CDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 335 ~~-~l~~~~~~~~~lIf~~s~~~--------~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
++ +-+++.++.++.|.|+-.++ |..+++.|+.. ++.+..+||.|+.+++++++++|++|+++|||||.+
T Consensus 463 ~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 463 YERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 33 34455677899999987665 45666667643 567899999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCC-CCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010672 404 AARGLDVKDVKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~~p-~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (504)
++.|||+|+++++|..+.- .-.++.-|-.||+||.+..+.|++++.+......+.-++.+.+...
T Consensus 543 IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~D 608 (677)
T COG1200 543 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTD 608 (677)
T ss_pred EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCC
Confidence 9999999999999988764 3578999999999999999999999999886777777788877644
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.3e-33 Score=296.71 Aligned_cols=332 Identities=17% Similarity=0.162 Sum_probs=217.8
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcC
Q 010672 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGA 197 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~ 197 (504)
.|.|||.+++..++.. ..+|+..++|.|||..+.+.+ ..+... +...++|||||+ .|..||..++.+ |.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil-~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMII-HQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHH-HHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 5999999999887653 469999999999999877644 443332 224569999998 899999999864 43
Q ss_pred CCCceEEEEECCCCChHhH---HHHhcCCcEEEeChHHHHHHHH-ccCcccccccEEEEcCccccccCC--cHHHHHHHH
Q 010672 198 SSKIKSTCIYGGVPKGPQV---RDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKIL 271 (504)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~---~~~~~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lV~DEah~~~~~~--~~~~~~~il 271 (504)
+....+ .+....... .......+++|+|++.+...-. .....-..+++||+||||++.... -...+..+.
T Consensus 224 ---l~~~i~-~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 224 ---LRFSLF-DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred ---CCeEEE-cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 222222 221110000 0111235799999887754111 011222468999999999986321 112233332
Q ss_pred HhcCCCCceEEecCCCcHH-HH------------------HH-------------HH-----------------HhhcCC
Q 010672 272 SQIRPDRQTLYWSATWPKE-VE------------------HL-------------AR-----------------QYLYNP 302 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT~~~~-~~------------------~~-------------~~-----------------~~~~~~ 302 (504)
........++++|||+-.. .. .+ +. .++.+.
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 2223456789999995310 00 00 00 000000
Q ss_pred ----e-----------------------------EEEEcC--CCcc-cccceeeeee-----------------------
Q 010672 303 ----Y-----------------------------KVIIGS--PDLK-ANHAIRQHVD----------------------- 323 (504)
Q Consensus 303 ----~-----------------------------~~~~~~--~~~~-~~~~~~~~~~----------------------- 323 (504)
. .+.+.. .... .+....+.+.
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 0 000000 0000 0000000000
Q ss_pred --------------ecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh-hCCCCeEEecCCCCHHHHHHHHH
Q 010672 324 --------------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLS 388 (504)
Q Consensus 324 --------------~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~-~~~~~~~~ih~~~~~~~r~~~~~ 388 (504)
......|...|.++++... ..|+||||+++..++.+++.|+ ..|+++..+||+|++.+|+.+++
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 0111245666777776543 5689999999999999999994 56999999999999999999999
Q ss_pred HHhcC--CCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010672 389 EFKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 389 ~f~~g--~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
.|+++ ..+|||||+++++|+|++.+++||+||+|+|+..|+||+||++|.|+++.+.+++...+......+.+.+.+
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99984 699999999999999999999999999999999999999999999999988777766655555555555555
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-32 Score=279.09 Aligned_cols=294 Identities=24% Similarity=0.303 Sum_probs=203.5
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 120 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.+|+++|++++..+.. .+..++++|||+|||.+++. ++..+.. .+|||||+++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~~----------~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELKR----------STLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHhcC----------CEEEEECcHHHHHHHHHHHHHh
Confidence 4789999999999988 88899999999999998665 3434332 2999999999999999887776
Q ss_pred cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
.... .....+++..... .. ..|+|+|.+.+.............+++|||||||++.+..+ +.+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELLS 171 (442)
T ss_pred cCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHHHhhh
Confidence 5332 1222333332211 11 36999999998764211122234789999999999976553 34444443
Q ss_pred CCCceEEecCCCcHHHHHHHHHh--hcCCeEEEEcCCCc-----ccccceeeeee-------------------------
Q 010672 276 PDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDL-----KANHAIRQHVD------------------------- 323 (504)
Q Consensus 276 ~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~------------------------- 323 (504)
....+++||||++.........+ +..|........+. .++........
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 22229999999764321111111 11122222111100 00000000000
Q ss_pred -----------ecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc
Q 010672 324 -----------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392 (504)
Q Consensus 324 -----------~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~ 392 (504)
......+...+..++..+..+.+++|||.++.++..++..+...++ +..+.+..+..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0111223333333444333356899999999999999999998888 8899999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhccccc
Q 010672 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437 (504)
Q Consensus 393 g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR 437 (504)
|.+++||++.++.+|+|+|+++++|...+..|...|+||+||..|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=6.4e-33 Score=256.64 Aligned_cols=332 Identities=21% Similarity=0.333 Sum_probs=258.9
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 103 DVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 103 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
+++.+.+..+.|+. ....+++|.|..+|+..+++.+++++.|||.||+++|.+|+|.. ...+||++|.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 45566777776654 46778899999999999999999999999999999999999865 4459999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH-------HhcCCcEEEeChHHHHH---HHHc--cCcccccccE
Q 010672 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD-------LQKGVEIVIATPGRLID---MLES--HNTNLRRVTY 249 (504)
Q Consensus 182 ~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-------~~~~~~Iiv~T~~~l~~---~l~~--~~~~l~~~~~ 249 (504)
..|.+.+.-.++.++.. ...+....+. +.... ......++..||+++.. ++.+ .......+.+
T Consensus 144 islmedqil~lkqlgi~----as~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQLGID----ASMLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHhCcc----hhhccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99999888888887633 2223222222 22111 12345789999999753 2222 2334566899
Q ss_pred EEEcCccccccCC--cHHHHHH--HHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeee-
Q 010672 250 LVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI- 324 (504)
Q Consensus 250 lV~DEah~~~~~~--~~~~~~~--il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (504)
+.+||+|...+++ |++.+.. ++...-+...+|+++||-.+++.+.+...+.-...+.+.... ...++...+..
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f--nr~nl~yev~qk 296 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF--NRPNLKYEVRQK 296 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc--CCCCceeEeeeC
Confidence 9999999999887 6666554 344444778899999999998888887776544333333322 12223333322
Q ss_pred -cChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 325 -VSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 325 -~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
..+++-.+.+..+++.-..+...||||-+++.|+.++..|+..|+.+..+|+.|.+.++.-+.+.|..|+++|+|||-.
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEee
Confidence 2345566777777777677778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHhHHHH-------------------------------------------HhcccccCCC
Q 010672 404 AARGLDVKDVKYVINYDFPGSLEDYVH-------------------------------------------RIGRTGRAGA 440 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~~p~s~~~~~Q-------------------------------------------riGR~gR~g~ 440 (504)
++.|||-|+|++||+..+|.|++.|.| --||+||.+.
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999999999999999999999 5699999999
Q ss_pred cceEEEEecccc
Q 010672 441 KGTAYTFFTAAN 452 (504)
Q Consensus 441 ~g~~~~~~~~~~ 452 (504)
+..|++++.-.|
T Consensus 457 ~a~cilyy~~~d 468 (695)
T KOG0353|consen 457 KADCILYYGFAD 468 (695)
T ss_pred cccEEEEechHH
Confidence 999999987654
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=5e-31 Score=279.92 Aligned_cols=315 Identities=19% Similarity=0.200 Sum_probs=218.5
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 120 FEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~---~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..|++.|.++++.+..+ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 789999999999999998876665543 5679999999999999999998743
Q ss_pred CCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcH-H--HHH-
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE-P--QIK- 268 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~-~--~~~- 268 (504)
+..+..++++.+....... + ...++|+|+|++.+. ..+.++++||+||+|........ + ..+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 3678888988776544332 2 245799999998763 34678999999999976533210 0 112
Q ss_pred -HHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChh------HHHHHHHHHHHhh
Q 010672 269 -KILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES------QKYNKLVKLLEDI 341 (504)
Q Consensus 269 -~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~~ 341 (504)
.++.....+.+++++|||++.+....+.. .....+.+..............+...... .--..+++.+++.
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 22333457889999999987554443321 11111111111100111111111111100 0113344444443
Q ss_pred -cCCCeEEEEeCCcc------------------------------------------------------------cHHHH
Q 010672 342 -MDGSRILIFMDTKK------------------------------------------------------------GCDQI 360 (504)
Q Consensus 342 -~~~~~~lIf~~s~~------------------------------------------------------------~~~~l 360 (504)
..+.++|||++.+. .++++
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 34558999987531 34677
Q ss_pred HHHHhhC--CCCeEEecCCCC--HHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC--CCC----------
Q 010672 361 TRQLRMD--GWPALSIHGDKS--QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--PGS---------- 424 (504)
Q Consensus 361 ~~~L~~~--~~~~~~ih~~~~--~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~--p~s---------- 424 (504)
++.|++. +.++..+|+++. ..+++.++++|++|+.+|||+|+++++|+|+|++++|+.+|. +-+
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 8888775 778999999986 467999999999999999999999999999999999865543 322
Q ss_pred HhHHHHHhcccccCCCcceEEEEeccccHH
Q 010672 425 LEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (504)
Q Consensus 425 ~~~~~QriGR~gR~g~~g~~~~~~~~~~~~ 454 (504)
...|+|++||+||.+..|.+++.....+..
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 367999999999999999999877655433
No 85
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=7.3e-31 Score=280.47 Aligned_cols=353 Identities=19% Similarity=0.223 Sum_probs=224.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..+|+|+|..+........-+++.||||+|||.+++.++...+.. +...+++|..||+++++|+++.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 448999999886554445568999999999999987765543322 22467999999999999999998763321
Q ss_pred --CCceEEEEECCCCChHhH--------------------HHHh----c---CCcEEEeChHHHHHHHHc-cCcccccc-
Q 010672 199 --SKIKSTCIYGGVPKGPQV--------------------RDLQ----K---GVEIVIATPGRLIDMLES-HNTNLRRV- 247 (504)
Q Consensus 199 --~~~~~~~~~gg~~~~~~~--------------------~~~~----~---~~~Iiv~T~~~l~~~l~~-~~~~l~~~- 247 (504)
....+...+|........ ..+. + -.+|+|||.++++..+.. ....+..+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 123566666654321110 0111 1 158999999998754433 22222333
Q ss_pred ---cEEEEcCccccccCCcHHHHHHHHHhc-CCCCceEEecCCCcHHHHHH-HHHhhcC-C--------eEEEEcCC---
Q 010672 248 ---TYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL-ARQYLYN-P--------YKVIIGSP--- 310 (504)
Q Consensus 248 ---~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~-~~~~~~~-~--------~~~~~~~~--- 310 (504)
++|||||+|.+-. -....+..++..+ .....+|+||||+|....+. ...+... + ........
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 5899999998733 2344556665554 34567999999999877653 3333211 0 00000000
Q ss_pred C--cccc---cceeeeeee--c--Ch-hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC---CCeEEecCC
Q 010672 311 D--LKAN---HAIRQHVDI--V--SE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---WPALSIHGD 377 (504)
Q Consensus 311 ~--~~~~---~~~~~~~~~--~--~~-~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~---~~~~~ih~~ 377 (504)
. .... ......+.+ . .. ......+..+++....++++||||||++.|.++++.|++.. .++..+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 0000 001111111 1 11 11122233333444567799999999999999999998764 579999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---CcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCc----c---
Q 010672 378 KSQAER----DWVLSEF-KAGK---SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----G--- 442 (504)
Q Consensus 378 ~~~~~r----~~~~~~f-~~g~---~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~----g--- 442 (504)
++..+| +++++.| ++++ ..|||||+++++|||| ++++||....| ++.++||+||++|.+.. |
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~ 673 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEI 673 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcC
Confidence 999999 4567788 6665 4799999999999999 68999998888 88999999999998753 2
Q ss_pred -eEEEEeccc-----------cHHHHHHHHHHHHHhC---CCCCHHHHHhhcCC
Q 010672 443 -TAYTFFTAA-----------NARFAKELITILEEAG---QKVSPELAAMGRGA 481 (504)
Q Consensus 443 -~~~~~~~~~-----------~~~~~~~l~~~l~~~~---~~~~~~l~~~~~~~ 481 (504)
.++++.... +...+..-...|.+.+ ..+|.....+.+..
T Consensus 674 p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~P~~~~~lve~v 727 (878)
T PRK09694 674 PVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFFPDAYREWIESV 727 (878)
T ss_pred ceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCChHHHHHHHHHH
Confidence 334432221 1123333445666664 46788887776643
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3.4e-31 Score=243.14 Aligned_cols=202 Identities=52% Similarity=0.868 Sum_probs=184.5
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 101 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
|+++++++.+.+.+.+.++..|+++|.++++.+++++++++++|||+|||++|++|++.++.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999888742 124788999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 181 t~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
+++|+.|+.+.+..+....++.+..+.|+.........+..+++|+|+||++|.+.+.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999998887777666666899999999999999988888889999999999999999
Q ss_pred CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEE
Q 010672 261 MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (504)
Q Consensus 261 ~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 305 (504)
.++...+..++..++...|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999999999999999999999999999999888765
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-31 Score=290.20 Aligned_cols=302 Identities=22% Similarity=0.271 Sum_probs=211.3
Q ss_pred HHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEE
Q 010672 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206 (504)
Q Consensus 127 ~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 206 (504)
.+.+..+..++.++++|+||||||+. +|.+..-.. .+...++++.-|.|.-|..+...+.+.. +..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHh---CCCcceE
Confidence 34555566667789999999999984 565433221 1123467778898877776666655422 1222223
Q ss_pred ECCC-CChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc-ccccCCcHHH-HHHHHHhcCCCCceEEe
Q 010672 207 YGGV-PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTLYW 283 (504)
Q Consensus 207 ~gg~-~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah-~~~~~~~~~~-~~~il~~~~~~~~~i~~ 283 (504)
.|.. ....+ ......|.++|++.|++.+..+. .+..+++||||||| ++++.+|... ++.++. .+++.++|+|
T Consensus 143 VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlm 217 (1283)
T TIGR01967 143 VGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIIT 217 (1283)
T ss_pred EeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEE
Confidence 3321 11111 13457899999999999887654 48899999999999 6998887765 455543 4578999999
Q ss_pred cCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC------hhHHHHHHHHHHHhhc--CCCeEEEEeCCcc
Q 010672 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKK 355 (504)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~--~~~~~lIf~~s~~ 355 (504)
|||++. ..+++.+...|+.. +.... ..+...+.... ..++...+.+.+..+. ..+.+|||++++.
T Consensus 218 SATld~--~~fa~~F~~apvI~-V~Gr~----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPIIE-VSGRT----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCEEE-ECCCc----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 999964 56776665555432 22111 11222222111 1234445555554432 3468999999999
Q ss_pred cHHHHHHHHhhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCC----------
Q 010672 356 GCDQITRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFP---------- 422 (504)
Q Consensus 356 ~~~~l~~~L~~~~---~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p---------- 422 (504)
+++.+++.|++.+ +.+..+||++++++|..+++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998764 4578899999999999986654 246899999999999999999999998853
Q ss_pred --------CCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 423 --------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 423 --------~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
-|.++|.||.|||||.+ .|.||.++++.+.
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 26689999999999996 9999999997653
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.5e-29 Score=265.10 Aligned_cols=337 Identities=20% Similarity=0.225 Sum_probs=258.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----C--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALK----G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 105 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
+.+....+.+...=-..-||-|..||..++. + -|-|+|+..|-|||-+++=+++..+.. ++.|.||
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvL 649 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVL 649 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEE
Confidence 3455666666654334679999999999874 3 379999999999999999888887765 7899999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcC
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DE 254 (504)
|||.-||+|.++.|++-....++++..+.--.+..++... +. ...||||+| +.+-+....+.++.+||+||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDE 724 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDE 724 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEec
Confidence 9999999999999998878889999888776665555433 33 358999999 44455677889999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
-|+ |+-.-+.-++.++.+.-++-||||+-+-...++-.-+.+-..+.... .....+.-++.-.++.--.+
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP---~~R~pV~T~V~~~d~~~ire-- 794 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP---EDRLPVKTFVSEYDDLLIRE-- 794 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC---CCCcceEEEEecCChHHHHH--
Confidence 999 46566677778889999999999986656666555544433332222 11222333332222222222
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 010672 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~ 412 (504)
.+++++..++++...+|..+..+.+++.|++. ..++.+.||.|+..+-+.++.+|-+|+.+|||||.+++.|||||+
T Consensus 795 -AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 795 -AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred -HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 34556677899999999999999999999985 567889999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCC-CCHhHHHHHhcccccCCCcceEEEEecccc--HHHHHHHHHHHHH
Q 010672 413 VKYVINYDFP-GSLEDYVHRIGRTGRAGAKGTAYTFFTAAN--ARFAKELITILEE 465 (504)
Q Consensus 413 v~~VI~~~~p-~s~~~~~QriGR~gR~g~~g~~~~~~~~~~--~~~~~~l~~~l~~ 465 (504)
+|.+|.-+.. .-.++..|..||+||..+.+.||.++.+.+ ...+.+-++.+++
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 9998866543 358899999999999999999999998653 2334444444444
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.1e-30 Score=266.94 Aligned_cols=316 Identities=17% Similarity=0.228 Sum_probs=227.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|...- +.-.+.-|+.++||+|||++|.+|++..+.. +..|+||+||++||.|.++++..+....+
T Consensus 82 ~~ydvQliGg--~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGG--MVLHEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhh--hhhccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 4455554444 3334567899999999999999999987764 44599999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc-Cccc-----ccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-~~~l-----~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.+.+++|+.+.......+ .++|+++||++| .+++... ..++ ..+.++|+||||.|+ |..
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998766554443 689999999999 8888765 3334 589999999999865 110
Q ss_pred -----cHHHHHHHHHhcCC--------------CCceE------------------------------------------
Q 010672 263 -----FEPQIKKILSQIRP--------------DRQTL------------------------------------------ 281 (504)
Q Consensus 263 -----~~~~~~~il~~~~~--------------~~~~i------------------------------------------ 281 (504)
....+..++..+.. ..+.+
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 11112222222211 11122
Q ss_pred --------------------------------------------------------------------------EecCCC
Q 010672 282 --------------------------------------------------------------------------YWSATW 287 (504)
Q Consensus 282 --------------------------------------------------------------------------~~SAT~ 287 (504)
+||+|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 222222
Q ss_pred cHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhh
Q 010672 288 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM 366 (504)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~ 366 (504)
..+..++..-|..+-+.+ ...............+.+..+|...+.+.+.+. ..+.|+||||+|+..++.++..|.+
T Consensus 390 ~te~~Ef~~iY~l~Vv~I---Ptnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVI---PTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCCCEEEC---CCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 222222222211111110 000000001112234456678888888777654 4567999999999999999999999
Q ss_pred CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC---------------------------------
Q 010672 367 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------- 413 (504)
Q Consensus 367 ~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v--------------------------------- 413 (504)
.++++..+|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 99999999999998621
Q ss_pred -----CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 414 -----KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 414 -----~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
=+||-...+.|..--.|-.||+||-|.+|.+..|++-.|.
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 2688888888888899999999999999999999987763
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=263.22 Aligned_cols=309 Identities=19% Similarity=0.187 Sum_probs=231.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
-++|..+|++||-++..|..+++.|+|.+|||+++..++...-. +..+++|-+|-++|-+|-++.|+.-...
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhccc
Confidence 34889999999999999999999999999999998765443222 3778999999999999999988863322
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
. ..++|+... ...+.++|+|.+.|..++-++..-++++.+|||||+|.+.|...+..++.++-.++++.
T Consensus 367 v----gLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 367 V----GLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred c----ceeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 2 256676543 45578999999999999999888899999999999999999998999999999999999
Q ss_pred ceEEecCCCcHHHHHHHHHhhcC---CeEEEEcCCCcccccceeeeeeec------------------------------
Q 010672 279 QTLYWSATWPKEVEHLARQYLYN---PYKVIIGSPDLKANHAIRQHVDIV------------------------------ 325 (504)
Q Consensus 279 ~~i~~SAT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 325 (504)
++|++|||.|+ ..+++.+...- .+.++... ..+..+++++...
T Consensus 436 ~~IlLSATVPN-~~EFA~WIGRtK~K~IyViST~---kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 436 NFILLSATVPN-TLEFADWIGRTKQKTIYVISTS---KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred eEEEEeccCCC-hHHHHHHhhhccCceEEEEecC---CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 99999999998 44566654321 11111110 1111111111100
Q ss_pred ---------------------------------ChhHHH--HHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHhhCC
Q 010672 326 ---------------------------------SESQKY--NKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDG 368 (504)
Q Consensus 326 ---------------------------------~~~~k~--~~l~~~l~~~~~~--~~~lIf~~s~~~~~~l~~~L~~~~ 368 (504)
....+. ...++++..+... -|++|||-+++.|++.++.|...+
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 000011 1344555443332 389999999999999999996422
Q ss_pred ---------------------------------------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010672 369 ---------------------------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 409 (504)
Q Consensus 369 ---------------------------------------~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvd 409 (504)
-.+.++||++-+--++-++-.|..|-++||+||.+++.|||
T Consensus 592 L~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVN 671 (1248)
T KOG0947|consen 592 LTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVN 671 (1248)
T ss_pred cccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcC
Confidence 12447899999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCC--------CCCHhHHHHHhcccccCCCc--ceEEEEecc
Q 010672 410 VKDVKYVINYDF--------PGSLEDYVHRIGRTGRAGAK--GTAYTFFTA 450 (504)
Q Consensus 410 i~~v~~VI~~~~--------p~s~~~~~QriGR~gR~g~~--g~~~~~~~~ 450 (504)
.|.-++|+.--. --.+-.|.||+|||||.|-+ |+++++...
T Consensus 672 MPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 672 MPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred CCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 998777763211 12578999999999998854 666666554
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6.2e-29 Score=254.88 Aligned_cols=292 Identities=22% Similarity=0.268 Sum_probs=194.8
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH---
Q 010672 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV--- 216 (504)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~--- 216 (504)
|+.++||||||.+|+..+ .++... +.++||++|+++|+.|+.+.+++.. +..+..++++.+.....
T Consensus 1 LL~g~TGsGKT~v~l~~i-~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAI-EKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 478999999999987644 443332 6679999999999999999998743 35677788877654432
Q ss_pred HHHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-----cH-HHHHHHHHhcCCCCceEEecCCCcH
Q 010672 217 RDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FE-PQIKKILSQIRPDRQTLYWSATWPK 289 (504)
Q Consensus 217 ~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-----~~-~~~~~il~~~~~~~~~i~~SAT~~~ 289 (504)
..+. ..++|+|+|+..+. ..+.++++|||||+|.....+ |. ..+.. +.....+.++|++|||++.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCCH
Confidence 2232 35799999998763 346789999999999876332 11 12222 2233467889999999765
Q ss_pred HHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChh---HHHHHHHHHHHhh-cCCCeEEEEeCCccc---------
Q 010672 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYNKLVKLLEDI-MDGSRILIFMDTKKG--------- 356 (504)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~-~~~~~~lIf~~s~~~--------- 356 (504)
+....+.. .....+.+............+.+...... .--..+++.+++. ..++++|||+|++..
T Consensus 142 es~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 142 ESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 44333321 11111111110000111111112111111 0112344444443 345689999877643
Q ss_pred ---------------------------------------------------HHHHHHHHhhC--CCCeEEecCCCCHHHH
Q 010672 357 ---------------------------------------------------CDQITRQLRMD--GWPALSIHGDKSQAER 383 (504)
Q Consensus 357 ---------------------------------------------------~~~l~~~L~~~--~~~~~~ih~~~~~~~r 383 (504)
++++++.|++. +.++..+|++++...+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 47778888775 6789999999987665
Q ss_pred --HHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE--EcCC----CC------CHhHHHHHhcccccCCCcceEEEEec
Q 010672 384 --DWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI--NYDF----PG------SLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 384 --~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI--~~~~----p~------s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
+.++++|++|+.+|||+|+++++|+|+|++++|+ ++|. |. ....|+|++||+||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999886 4443 21 24679999999999999999986654
Q ss_pred ccc
Q 010672 450 AAN 452 (504)
Q Consensus 450 ~~~ 452 (504)
..+
T Consensus 380 ~p~ 382 (505)
T TIGR00595 380 NPN 382 (505)
T ss_pred CCC
Confidence 433
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.5e-29 Score=262.05 Aligned_cols=316 Identities=20% Similarity=0.241 Sum_probs=236.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|.-+.-.+.+| -|+.++||+|||++|.+|++...+. +..|-|++||..||.|..+++..+...++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 6777787776655544 5999999999999999999644443 33478999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHccC------cccccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.+.++.++.+...+...+ .++|+++|+..| .+++.... ..+..+.++||||||.|+ |..
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999998776665554 489999999999 88887543 236788999999999865 100
Q ss_pred -----cHHHHHHHHHhcCCC------------------------------------------------------------
Q 010672 263 -----FEPQIKKILSQIRPD------------------------------------------------------------ 277 (504)
Q Consensus 263 -----~~~~~~~il~~~~~~------------------------------------------------------------ 277 (504)
....+..++..+..+
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 111112222222100
Q ss_pred ---------------------------------------------------------CceEEecCCCcHHHHHHHHHhhc
Q 010672 278 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 300 (504)
Q Consensus 278 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 300 (504)
.++.+||+|...+..++...|..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 13345666655544444444433
Q ss_pred CCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+-+.+.... .............+..+|...+.+.+.+. ..+.++||||+|+..++.++..|.+.++++..+|+.
T Consensus 389 ~vv~IPtnk---p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVIPTNR---PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEcCCCC---CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 322221100 00011112234556778999998888763 455699999999999999999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC--------------------------------------CEEEEcCC
Q 010672 380 QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV--------------------------------------KYVINYDF 421 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v--------------------------------------~~VI~~~~ 421 (504)
+.+|+..+..|..+...|+|||++++||+||+-- =+||-...
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 7899999999999999999999999999999742 27888888
Q ss_pred CCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 422 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 422 p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+.|..--.|-.||+||-|.+|.+..|++-.|.
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 99999999999999999999999999987763
No 93
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=2.7e-29 Score=257.91 Aligned_cols=344 Identities=21% Similarity=0.262 Sum_probs=247.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i--~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (504)
++....-..+..|..+++.||.+++ +.++.+++.|..+||+.|||+++.+-++..++.. ...++++.|...
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vs 280 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVS 280 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceee
Confidence 3334444445678889999999998 5678899999999999999999999888887764 456999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc--cCcccccccEEEEcCccccccC
Q 010672 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDM 261 (504)
Q Consensus 184 L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lV~DEah~~~~~ 261 (504)
.+..-...+..|....++.+.+.+|..+.... .+...+.|||.++-..++++ ..-.+..+++||+||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 99888888999999999999988876655333 23357999999985443332 1223567899999999999999
Q ss_pred CcHHHHHHHHHhc-----CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHH-----
Q 010672 262 GFEPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY----- 331 (504)
Q Consensus 262 ~~~~~~~~il~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----- 331 (504)
+.+..++.++.++ ....|+|+||||+|+ +..+...+-...+.......++.....+-..+.......-.
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~ 435 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPN-NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIAN 435 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCC-hHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhh
Confidence 9888888887764 344679999999986 33333322211111111111111111111111111000000
Q ss_pred -----------HHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhh---------------------------------
Q 010672 332 -----------NKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM--------------------------------- 366 (504)
Q Consensus 332 -----------~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~--------------------------------- 366 (504)
+.+..++.+. .++.++||||++++.|+.++..+..
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 2223333332 3344699999999999998866532
Q ss_pred -----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC----CCCHhHHHHHhccccc
Q 010672 367 -----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF----PGSLEDYVHRIGRTGR 437 (504)
Q Consensus 367 -----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~----p~s~~~~~QriGR~gR 437 (504)
..+.++++|++++.++|+.+...|++|.+.|++||++++.|+|+|..+++|-.-+ ..+.-+|.||+|||||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 0144678899999999999999999999999999999999999999998885432 3467899999999999
Q ss_pred CCCc--ceEEEEeccccHHHHHHHHH
Q 010672 438 AGAK--GTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 438 ~g~~--g~~~~~~~~~~~~~~~~l~~ 461 (504)
+|-+ |.+++++.+.+.+...+++.
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred cccccCcceEEEeeccchhHHHHHHh
Confidence 9754 99999999999877665444
No 94
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.5e-30 Score=256.59 Aligned_cols=310 Identities=20% Similarity=0.259 Sum_probs=237.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
-++|.|+|..+|..+-.+..++++|.|.+|||.++..++...+.. +.+|||-+|-++|-+|-++++..-...
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 457899999999999999999999999999999988877777665 667999999999999999988753333
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
|...+|+... ...+..+|+|.+.|..++-++.--+..+.+|||||+|.|-|...+-.++..+-.++++.
T Consensus 199 ----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 ----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred ----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 3444555443 33467899999999999999888899999999999999999988888888888889999
Q ss_pred ceEEecCCCcHHHHHHHHHhh---cCCeEEEEcCCCcccccceeeeee---------ecCh-----hHHHHHHHHHH---
Q 010672 279 QTLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVD---------IVSE-----SQKYNKLVKLL--- 338 (504)
Q Consensus 279 ~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-----~~k~~~l~~~l--- 338 (504)
+.+++|||+|+ ..+++.+.+ ..|.++...... +..+.+++. ++++ ++.....+..|
T Consensus 268 r~VFLSATiPN-A~qFAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 268 RFVFLSATIPN-ARQFAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred eEEEEeccCCC-HHHHHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 99999999998 445666543 456666655433 222333321 1111 12222222222
Q ss_pred --------------------------------Hhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCC--------------
Q 010672 339 --------------------------------EDIM--DGSRILIFMDTKKGCDQITRQLRMDGWP-------------- 370 (504)
Q Consensus 339 --------------------------------~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~-------------- 370 (504)
+.+. .-.++|||+-++++|+.+|-.+.+..++
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 2111 1238999999999999999888654322
Q ss_pred -------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cCC
Q 010672 371 -------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF 421 (504)
Q Consensus 371 -------------------------~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~~ 421 (504)
+.++|+++-+--++-+.-.|..|-+++|+||.+++.|+|.|+-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 336799999999999999999999999999999999999998777762 221
Q ss_pred C----CCHhHHHHHhcccccCCCc--ceEEEEeccc
Q 010672 422 P----GSLEDYVHRIGRTGRAGAK--GTAYTFFTAA 451 (504)
Q Consensus 422 p----~s~~~~~QriGR~gR~g~~--g~~~~~~~~~ 451 (504)
. -+.-.|+||.|||||.|.+ |.+|+++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1 2567999999999999865 8888888764
No 95
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9.9e-29 Score=258.23 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=128.9
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010672 102 RDVGFPDYVMQEIS-----KAGFFEP---TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (504)
Q Consensus 102 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 173 (504)
+.+.+..++...+. ..||..| +|+|.++++.++.++++++.++||+|||++|++|++..+.. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 45677888887776 5788888 99999999999999999999999999999999999988764 22
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHccCcccc-------
Q 010672 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHNTNLR------- 245 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~~~l~------- 245 (504)
.++||+||++||.|..+++..+....++++.+++||.+...+...+ .++|+|+||++| .+++......++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 3899999999999999999999999999999999999887776554 589999999999 999987655554
Q ss_pred cccEEEEcCccccc
Q 010672 246 RVTYLVLDEADRML 259 (504)
Q Consensus 246 ~~~~lV~DEah~~~ 259 (504)
.+.++|+||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 45899999999876
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.1e-29 Score=259.22 Aligned_cols=316 Identities=21% Similarity=0.261 Sum_probs=229.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|++.|.-+.-.+..|+ |+.+.||+|||+++.+|++..... +..|-+++|+.-||.|-++++..+...++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 67788877766665554 999999999999999999888776 67799999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHH-HHHHcc------CcccccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.+.++.++.+...... .-.|+|+.+|...|. ++|... ......+.+.|+||+|.++ |..
T Consensus 150 l~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 99999988765544333 346799999987763 333221 1124567899999999755 100
Q ss_pred -----cHHHHHHHHHhcCCC------------------------------------------------------------
Q 010672 263 -----FEPQIKKILSQIRPD------------------------------------------------------------ 277 (504)
Q Consensus 263 -----~~~~~~~il~~~~~~------------------------------------------------------------ 277 (504)
....+..++..+...
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 001111111111100
Q ss_pred --------------------------------------------------------------------CceEEecCCCcH
Q 010672 278 --------------------------------------------------------------------RQTLYWSATWPK 289 (504)
Q Consensus 278 --------------------------------------------------------------------~~~i~~SAT~~~ 289 (504)
.++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 123344444443
Q ss_pred HHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCC
Q 010672 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDG 368 (504)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~ 368 (504)
+..++...|..+-+. +.... ...........+.+...|...+.+.+... ..+.++||||+|+..++.++..|.+.+
T Consensus 388 e~~Ef~~iY~l~vv~--IPtnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNMEVIT--IPTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCCEEE--cCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 333333333222111 11100 00001112233456678888888888654 456799999999999999999999999
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC---CCC-----EEEEcCCCCCHhHHHHHhcccccCCC
Q 010672 369 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGA 440 (504)
Q Consensus 369 ~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~---~v~-----~VI~~~~p~s~~~~~QriGR~gR~g~ 440 (504)
+++..+|+++...++..+..+++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888888888777 999999999999995 888 99999999999999999999999999
Q ss_pred cceEEEEeccccH
Q 010672 441 KGTAYTFFTAANA 453 (504)
Q Consensus 441 ~g~~~~~~~~~~~ 453 (504)
+|.+..|++..|.
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999998763
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.3e-28 Score=260.83 Aligned_cols=310 Identities=22% Similarity=0.299 Sum_probs=232.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGAS 198 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~ 198 (504)
+.|.++|++++..+..+..++++||||+|||+++..++...+.. +.+++|.+|.++|.+|.+..+.. |+..
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 48999999999999999999999999999999988876666554 56699999999999999988774 5433
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
.-.+..++|+... ..++.++|+|.+.|.+++..+...+.++.+|||||+|.|.|...+..++.++-.++...
T Consensus 190 -~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 190 -ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred -hhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 2334555665543 45678999999999999999888899999999999999999999999999999999999
Q ss_pred ceEEecCCCcHHHHHHHHHhh---cCCeEEEEcCCCcccccceeeeeeec-------ChhHH------------------
Q 010672 279 QTLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVDIV-------SESQK------------------ 330 (504)
Q Consensus 279 ~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~k------------------ 330 (504)
++++||||.|+ -.+++.++- ..|..++.... .+..+.+++... ++..+
T Consensus 262 ~~v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~---RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 262 RFVFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEH---RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred cEEEEeCCCCC-HHHHHHHHHhccCCCeEEEeecC---CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 99999999987 444555443 34444444332 222222222211 11110
Q ss_pred -----------------------------HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh---------------
Q 010672 331 -----------------------------YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM--------------- 366 (504)
Q Consensus 331 -----------------------------~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~--------------- 366 (504)
...++..+.. ...-++|+|+-+++.|+..+..+..
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ 416 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIRE 416 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHH
Confidence 0011111111 1123899999999999888877742
Q ss_pred -------------CCCC-------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE---
Q 010672 367 -------------DGWP-------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI--- 417 (504)
Q Consensus 367 -------------~~~~-------------~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI--- 417 (504)
.+++ ...+|++|-+..+..+...|..|-++|++||.+++.|+|.|.-++|+
T Consensus 417 ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l 496 (1041)
T COG4581 417 IIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSL 496 (1041)
T ss_pred HHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeee
Confidence 1121 22679999999999999999999999999999999999999777766
Q ss_pred -EcC----CCCCHhHHHHHhcccccCCCc--ceEEEEecc
Q 010672 418 -NYD----FPGSLEDYVHRIGRTGRAGAK--GTAYTFFTA 450 (504)
Q Consensus 418 -~~~----~p~s~~~~~QriGR~gR~g~~--g~~~~~~~~ 450 (504)
.+| .+-++..|.|+.|||||.|.+ |.+++...+
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 222 123689999999999999876 777777443
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.9e-28 Score=269.27 Aligned_cols=308 Identities=16% Similarity=0.205 Sum_probs=198.1
Q ss_pred CCCcHHHHHHHHHHh----c-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 120 FEPTPIQAQGWPMAL----K-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
..|+++|.+|+..+. . .+.+|++++||||||.+++. ++..+... ....+||||+|+++|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 468999999998765 2 35799999999999988544 44444432 1246899999999999999999998
Q ss_pred hcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-----CcccccccEEEEcCcccccc---------
Q 010672 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLD--------- 260 (504)
Q Consensus 195 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----~~~l~~~~~lV~DEah~~~~--------- 260 (504)
+..........+++...... ........|+|+|+++|...+... ...+..+++||+||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 75432212111221110000 011234689999999997765321 13467889999999999531
Q ss_pred CC------cHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHH--------------Hhhc---CCeEEEEcCC--Ccc--
Q 010672 261 MG------FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR--------------QYLY---NPYKVIIGSP--DLK-- 313 (504)
Q Consensus 261 ~~------~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~--------------~~~~---~~~~~~~~~~--~~~-- 313 (504)
.. +...++.++..+ +...|+||||+.....++.. -++. .|+.+..... ...
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 01 135677777765 35689999998643322211 1111 1222111000 000
Q ss_pred ccccee------eee--eecCh---------------hHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhC
Q 010672 314 ANHAIR------QHV--DIVSE---------------SQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD 367 (504)
Q Consensus 314 ~~~~~~------~~~--~~~~~---------------~~k~~~l~~~l~~~---~~~~~~lIf~~s~~~~~~l~~~L~~~ 367 (504)
....+. ..+ ...++ ......+++.+... ...+++||||.++.+|+.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 000000 000 00000 01111122212121 12369999999999999999887653
Q ss_pred ------CC---CeEEecCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhccccc
Q 010672 368 ------GW---PALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR 437 (504)
Q Consensus 368 ------~~---~~~~ih~~~~~~~r~~~~~~f~~g~~-~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR 437 (504)
++ .+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 22 4567888875 56789999999887 589999999999999999999999999999999999999999
Q ss_pred CC
Q 010672 438 AG 439 (504)
Q Consensus 438 ~g 439 (504)
.-
T Consensus 800 ~~ 801 (1123)
T PRK11448 800 LC 801 (1123)
T ss_pred CC
Confidence 63
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=5.6e-28 Score=260.76 Aligned_cols=318 Identities=20% Similarity=0.248 Sum_probs=218.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+|+|||.+++.+++ .+.+.|++.++|.|||+.++. ++.++.... +....+|||||. .+..||.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999875 467899999999999998543 555554321 123348999997 66788999999998
Q ss_pred CCCCceEEEEECCCCChHhHHH---HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHh
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~---~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~ 273 (504)
+. +++..++|.......... .....+|+|+|++.+...... +.--.+++|||||||++.+. ...+.+.+..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 54 566666665433222211 123578999999988654321 22235789999999999765 3445556666
Q ss_pred cCCCCceEEecCCCcH-HHHHH---HH-------------------------------------Hh------------hc
Q 010672 274 IRPDRQTLYWSATWPK-EVEHL---AR-------------------------------------QY------------LY 300 (504)
Q Consensus 274 ~~~~~~~i~~SAT~~~-~~~~~---~~-------------------------------------~~------------~~ 300 (504)
++ ....+++|+|+-. ...++ +. .+ +.
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 64 4456889999521 11111 00 00 00
Q ss_pred CCeEEE--EcCCCc--cccc---------------------ceee----------------------eeeecChhHHHHH
Q 010672 301 NPYKVI--IGSPDL--KANH---------------------AIRQ----------------------HVDIVSESQKYNK 333 (504)
Q Consensus 301 ~~~~~~--~~~~~~--~~~~---------------------~~~~----------------------~~~~~~~~~k~~~ 333 (504)
...... +..... ..+. .+.+ .-..+....|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 000000 000000 0000 0000 0001123456666
Q ss_pred HHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEccccccCCC
Q 010672 334 LVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---KSPIMTATDVAARGLD 409 (504)
Q Consensus 334 l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g---~~~vLVaT~~~~~Gvd 409 (504)
|..+|..+. .+.++|||++.....+.|.++|...++.+..|||+++..+|..+++.|++. ..-+|++|.+.+.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 777776654 356999999999999999999999999999999999999999999999864 2357899999999999
Q ss_pred CCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEE--Eeccc
Q 010672 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFTAA 451 (504)
Q Consensus 410 i~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~--~~~~~ 451 (504)
+..+++||+||++|||....|++||+.|.|+...+.+ |++..
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999865544 44443
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.2e-26 Score=213.01 Aligned_cols=306 Identities=20% Similarity=0.238 Sum_probs=215.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+|+|.|+.+-..+. +.+++|+.|-||+|||.. +.+.+...+++ |.+|.+.+|....+.+++..++.-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78999998877654 568999999999999976 55667776664 7889999999999999999998754
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHH-HhcC
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL-SQIR 275 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il-~~~~ 275 (504)
. +..+.++||+....- ...++|+|..+|+.+.. .++++|+||+|.+.-.. .+.+...+ ...+
T Consensus 169 ~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark 231 (441)
T COG4098 169 S--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARK 231 (441)
T ss_pred c--cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhhc
Confidence 3 366788998875422 25899999999988744 47899999999875433 23343333 3445
Q ss_pred CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHH------HHHHHHHHhhc-CCCeEE
Q 010672 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY------NKLVKLLEDIM-DGSRIL 348 (504)
Q Consensus 276 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~l~~~~-~~~~~l 348 (504)
+.--+|.+|||+++..+.-+..--.. .+.+..-.-..+-.+...+-..+...++ ..|...|+... .+.+++
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 67779999999988766544332111 1221111101111122222222222222 24566666543 456999
Q ss_pred EEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC--CCC
Q 010672 349 IFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF--PGS 424 (504)
Q Consensus 349 If~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~--p~s 424 (504)
||+++....+.++..|++. ...+..+|+. ...|.+..++|++|++++||+|.+++|||.+|++++.|.-.- ..+
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfT 387 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFT 387 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccccc
Confidence 9999999999999999543 3345678875 347888999999999999999999999999999998775432 357
Q ss_pred HhHHHHHhcccccCCC--cceEEEEeccccHHH
Q 010672 425 LEDYVHRIGRTGRAGA--KGTAYTFFTAANARF 455 (504)
Q Consensus 425 ~~~~~QriGR~gR~g~--~g~~~~~~~~~~~~~ 455 (504)
.+..+|..||+||.-. +|..+.|-.-..+.+
T Consensus 388 esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 388 ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred HHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 8899999999999543 365555544444443
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.6e-26 Score=241.42 Aligned_cols=316 Identities=18% Similarity=0.211 Sum_probs=224.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|.-.- +.-.+.-|+.++||.|||++|.+|++.+.+. +..|.||+|+..||.|..+++..+....+
T Consensus 82 ~~ydVQliGg--l~L~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGG--MVLDSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcc--hHhcCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4555565443 3334567999999999999999999887765 44599999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc-Cccc-----ccccEEEEcCccccccCC-----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDMG----------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~-~~~l-----~~~~~lV~DEah~~~~~~----------- 262 (504)
+.+.++.++.+... ....-.++|+++||+.| .++|... .... ..+.++|+||||.++-..
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 99999999876522 22234689999999999 7887765 3332 678999999999765210
Q ss_pred -----cHHHHHHHHHhcC-------------------CCCc---------------------------------------
Q 010672 263 -----FEPQIKKILSQIR-------------------PDRQ--------------------------------------- 279 (504)
Q Consensus 263 -----~~~~~~~il~~~~-------------------~~~~--------------------------------------- 279 (504)
....+..++..+. ...+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 0011111111110 0111
Q ss_pred -----------------------------------------------------------------------------eEE
Q 010672 280 -----------------------------------------------------------------------------TLY 282 (504)
Q Consensus 280 -----------------------------------------------------------------------------~i~ 282 (504)
+.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 122
Q ss_pred ecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH
Q 010672 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT 361 (504)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~ 361 (504)
||+|...+..++...|..+-+.+-... ...........+.+..+|...+++.+.+. ..+.++||||.|+..++.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnk---p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPTNR---PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCCCC---CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 222222222222222211111110000 00000111223445678888888777664 45669999999999999999
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC----------------------------
Q 010672 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV---------------------------- 413 (504)
Q Consensus 362 ~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v---------------------------- 413 (504)
..|...++++..+|+.+++.++..+.+.|+.|. |+|||++++||+||.=-
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 99999999999999621
Q ss_pred ---------CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 414 ---------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 414 ---------~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
=+||-...+.|..--.|-.||+||-|.+|.+..|++-.|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2788888898999999999999999999999999987764
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=1.3e-26 Score=206.25 Aligned_cols=165 Identities=33% Similarity=0.548 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010672 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 202 (504)
||+|.++++.+.+++++++.+|||+|||++++++++..+... +..++|+++|+++|++|..+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888763 13489999999999999999999998888889
Q ss_pred EEEEECCCCCh-HhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC--CCCc
Q 010672 203 STCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQ 279 (504)
Q Consensus 203 ~~~~~gg~~~~-~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~--~~~~ 279 (504)
+..++++.... .....+..+++|+|+||++|.+.+.....++.++++||+||+|.+.+..+...+..++..+. .+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999988755 33334456799999999999999988655777899999999999999888888999888873 3689
Q ss_pred eEEecCCCcHHHHH
Q 010672 280 TLYWSATWPKEVEH 293 (504)
Q Consensus 280 ~i~~SAT~~~~~~~ 293 (504)
++++|||+++.++.
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999976654
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=4.1e-25 Score=237.07 Aligned_cols=325 Identities=18% Similarity=0.249 Sum_probs=218.9
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~---~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..++.|..++..++.. . .+++.||||+|||.+++++++..+... .....+++++.|++++++++++.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3488999999988753 3 688999999999999999888776652 1247889999999999999999999865
Q ss_pred CCCCceEEEEECCCCChHhHHH-----H---------hcCCcEEEeChHHHHHHHHccCc-c-c--ccccEEEEcCcccc
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRD-----L---------QKGVEIVIATPGRLIDMLESHNT-N-L--RRVTYLVLDEADRM 258 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~-----~---------~~~~~Iiv~T~~~l~~~l~~~~~-~-l--~~~~~lV~DEah~~ 258 (504)
..........++.......... . ..-..++++||-.+......... . + -..+++||||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 4433322212222111110000 0 00124555565554442222111 1 1 12378999999998
Q ss_pred ccCCcHHHHHHHHHhc-CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcc--cccceeeeee-ecChhHHHHHH
Q 010672 259 LDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLK--ANHAIRQHVD-IVSESQKYNKL 334 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~k~~~l 334 (504)
.+......+..++..+ .....+|++|||+|+...+.....+.....+........ ....+.+... ...........
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 8773244444444443 357789999999999999888888776655444322100 0001111100 00111001222
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEccccccCCCC
Q 010672 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVAARGLDV 410 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~----~g~~~vLVaT~~~~~Gvdi 410 (504)
........++++++|.|||+..|.++...|+..+..+..+|+.+...+|.+.++.++ .....|+|||++++.|||+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 233344556779999999999999999999998778999999999999998888654 4678899999999999999
Q ss_pred CCCCEEEEcCCCCCHhHHHHHhcccccCC--CcceEEEEecccc
Q 010672 411 KDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKGTAYTFFTAAN 452 (504)
Q Consensus 411 ~~v~~VI~~~~p~s~~~~~QriGR~gR~g--~~g~~~~~~~~~~ 452 (504)
+.+++|-==.| ++..+||+||++|.| ..|..+++.....
T Consensus 511 -dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 511 -DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred -ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 57877765555 899999999999999 5677777776554
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=1.6e-24 Score=217.29 Aligned_cols=318 Identities=23% Similarity=0.297 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.+++||.+.++++. .|-+.|+..++|.|||+. .+++|.++..... ..+| .||+||...|.+ |..++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~---~~GP-fLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG---IPGP-FLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC---CCCC-eEEEeeHhhHHH-HHHHHHHhC
Confidence 68999999999876 366899999999999987 4556666655211 1133 899999988865 899999998
Q ss_pred CCCCceEEEEECCCCChHhHH-HH--hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHh
Q 010672 197 ASSKIKSTCIYGGVPKGPQVR-DL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~-~~--~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~ 273 (504)
+. +++++++|....+.... ++ ....+|+|+|++..+.- +..+.--.+.||||||||++.+. ...+.++++.
T Consensus 241 P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 PS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred CC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 76 78888888764433322 22 23579999999987643 11112235689999999999887 3456677877
Q ss_pred cCCCCceEEecCCCc-HHHHHH---HHHh-------------------------------------------------hc
Q 010672 274 IRPDRQTLYWSATWP-KEVEHL---ARQY-------------------------------------------------LY 300 (504)
Q Consensus 274 ~~~~~~~i~~SAT~~-~~~~~~---~~~~-------------------------------------------------~~ 300 (504)
+.... .+++|+|+- +++.++ +... +.
T Consensus 315 f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 75444 567788831 111110 0000 00
Q ss_pred CC--eEEEEcCCC-------------c----ccc------------------------------cceeeeeeecChhHHH
Q 010672 301 NP--YKVIIGSPD-------------L----KAN------------------------------HAIRQHVDIVSESQKY 331 (504)
Q Consensus 301 ~~--~~~~~~~~~-------------~----~~~------------------------------~~~~~~~~~~~~~~k~ 331 (504)
.. +.+.++... + ... ......-..+....|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 00 001100000 0 000 0000001112345677
Q ss_pred HHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEccccccC
Q 010672 332 NKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARG 407 (504)
Q Consensus 332 ~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~---~~vLVaT~~~~~G 407 (504)
..|..+|..+. .+++||||.+-....+.|.++..-.++...-|.|.++.++|...++.|.... .-+|++|.+.+-|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 77777777664 4569999999999999999999999999999999999999999999999654 3478999999999
Q ss_pred CCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 408 vdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
||+..+++||.||..|||..-.|..-||.|.|++..+.+|-.-.
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 99999999999999999999999999999999987666554433
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.7e-24 Score=228.34 Aligned_cols=306 Identities=21% Similarity=0.275 Sum_probs=213.3
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceE
Q 010672 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (504)
Q Consensus 125 ~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~~ 203 (504)
...+.+.++.+.+-++++++||||||+..-..++..-. ..+.++.+.-|.|-=|..+.+.+.+ ++...+-.|
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 34455566667788999999999999863332332221 2355789999998666666666554 333333222
Q ss_pred EEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc-ccccCCcHH-HHHHHHHhcCCCCceE
Q 010672 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEP-QIKKILSQIRPDRQTL 281 (504)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah-~~~~~~~~~-~~~~il~~~~~~~~~i 281 (504)
....-.. ........|-++|.+.|+..+..+.. |+.+++||||||| +.++.++.- .+..++...+++.++|
T Consensus 127 GY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 127 GYSIRFE------SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred eEEEEee------ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 2111110 11123468999999999999887555 8999999999999 444444333 3445566677789999
Q ss_pred EecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeee-eecChhH-HHHHHHHHHHhhc--CCCeEEEEeCCcccH
Q 010672 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSESQ-KYNKLVKLLEDIM--DGSRILIFMDTKKGC 357 (504)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-k~~~l~~~l~~~~--~~~~~lIf~~s~~~~ 357 (504)
.||||+.. +.+...+..-|+...-+.. ..++..+ ....... -...+...+..+. ..+.+|||.+...+.
T Consensus 200 imSATld~--~rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 200 IMSATLDA--ERFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEecccCH--HHHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 99999854 5565555545554433321 1122222 1111222 3344444444432 346899999999999
Q ss_pred HHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC------------
Q 010672 358 DQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------------ 421 (504)
Q Consensus 358 ~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~------------ 421 (504)
+.+++.|.+ ....+..+||.++.+++..+++--..++.+|++||++++.+|.||++.+||+-+.
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999987 3477889999999999999888887887889999999999999999999996553
Q ss_pred ------CCCHhHHHHHhcccccCCCcceEEEEecccc
Q 010672 422 ------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (504)
Q Consensus 422 ------p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~ 452 (504)
|-|-++..||.|||||. .+|.||-++++.+
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred eeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 33788999999999999 7899999999854
No 106
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.6e-23 Score=207.87 Aligned_cols=337 Identities=21% Similarity=0.264 Sum_probs=227.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
+.+|..+.. .|.+||++++.++.. +..-|+-..+|.|||.. ++..|..+...... -..+||||
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~----~~paLIVC 262 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL----TKPALIVC 262 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc----cCceEEEc
Confidence 456666644 569999999999863 45689999999999976 34455555443211 24599999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCCh------------H-hHHHHhcCCcEEEeChHHHHHHHHccCccccc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG------------P-QVRDLQKGVEIVIATPGRLIDMLESHNTNLRR 246 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~------------~-~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~ 246 (504)
|. .+..||.+++..+.+. ++|..+++..... . ..+.......|+|+|++.|.- ......-..
T Consensus 263 P~-Tii~qW~~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~ 337 (923)
T KOG0387|consen 263 PA-TIIHQWMKEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGIL 337 (923)
T ss_pred cH-HHHHHHHHHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCccccccc
Confidence 97 7889999999999876 6777777655421 0 011122345799999987732 122333346
Q ss_pred ccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc-HHHHHHHHH----------------------------
Q 010672 247 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP-KEVEHLARQ---------------------------- 297 (504)
Q Consensus 247 ~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~-~~~~~~~~~---------------------------- 297 (504)
++++|+||.|+|-+.. ..+...+.++ +..+.|.+|.|+- +++.++-..
T Consensus 338 W~y~ILDEGH~IrNpn--s~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggy 414 (923)
T KOG0387|consen 338 WDYVILDEGHRIRNPN--SKISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGY 414 (923)
T ss_pred ccEEEecCcccccCCc--cHHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheecccc
Confidence 7899999999998875 3444445555 3455677788831 111111100
Q ss_pred ------------------------hh-------------cCC-eEEEE--------------------------------
Q 010672 298 ------------------------YL-------------YNP-YKVII-------------------------------- 307 (504)
Q Consensus 298 ------------------------~~-------------~~~-~~~~~-------------------------------- 307 (504)
|+ ... ..+.+
T Consensus 415 aNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~ 494 (923)
T KOG0387|consen 415 ANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLS 494 (923)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCcccee
Confidence 00 000 00000
Q ss_pred ---------cCCCccccc--ceeee--e-eecChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHh-hCCCCe
Q 010672 308 ---------GSPDLKANH--AIRQH--V-DIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLR-MDGWPA 371 (504)
Q Consensus 308 ---------~~~~~~~~~--~~~~~--~-~~~~~~~k~~~l~~~l~~~~~-~~~~lIf~~s~~~~~~l~~~L~-~~~~~~ 371 (504)
..+.+.... ...+. + .......|+..+..+|....+ +.++|+|..++...+.|...|. ..++.+
T Consensus 495 Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysy 574 (923)
T KOG0387|consen 495 GIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSY 574 (923)
T ss_pred chHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceE
Confidence 000000000 00000 0 112335678888888877644 5599999999999999999999 689999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCC-c-EEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEE--EE
Q 010672 372 LSIHGDKSQAERDWVLSEFKAGKS-P-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY--TF 447 (504)
Q Consensus 372 ~~ih~~~~~~~r~~~~~~f~~g~~-~-vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~--~~ 447 (504)
..+.|..+...|..++++|+++.. . +|++|.+.+-|+|+..++.||.||+.|||++-.|..-||.|.|++..++ -|
T Consensus 575 lRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 575 LRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred EEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 999999999999999999997754 3 5788899999999999999999999999999999999999999986444 45
Q ss_pred eccc---cHHHHHHHHH
Q 010672 448 FTAA---NARFAKELIT 461 (504)
Q Consensus 448 ~~~~---~~~~~~~l~~ 461 (504)
++.. ++-|-+.+.+
T Consensus 655 ~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 655 MTAGTIEEKIYHRQIFK 671 (923)
T ss_pred ecCCcHHHHHHHHHHHH
Confidence 5554 4444444444
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=8.5e-23 Score=214.52 Aligned_cols=135 Identities=20% Similarity=0.326 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010672 327 ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (504)
...++..+++.+... ..+.++||||++++.++.+++.|.+.++++..+|+++++.+|..+++.|++|++.|||||++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 344566677766654 3456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcC-----CCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHH
Q 010672 406 RGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITI 462 (504)
Q Consensus 406 ~Gvdi~~v~~VI~~~-----~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 462 (504)
+|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|++..+..+...+.+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999988 799999999999999998 78999999998766555554443
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.91 E-value=9.4e-23 Score=203.53 Aligned_cols=303 Identities=23% Similarity=0.321 Sum_probs=206.5
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceE
Q 010672 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (504)
Q Consensus 125 ~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~~ 203 (504)
+-.+.+..+...+-+++.++||||||+. +| +.+.+..+.. ..++-+.-|.|--|..+++.... .+...+-.|
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~~---~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFAS---SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhccccc---CCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 3445566667778899999999999986 22 3333322222 22388888998766666655443 333333222
Q ss_pred E--EEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc-cccCCc-HHHHHHHHHhcCCCCc
Q 010672 204 T--CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGF-EPQIKKILSQIRPDRQ 279 (504)
Q Consensus 204 ~--~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~-~~~~~~-~~~~~~il~~~~~~~~ 279 (504)
. .-+.+.. .....|.+.|.+.|++.+..+ ..|+++++||+||||. -+..+. .-.+++++ .-+++.+
T Consensus 128 GY~IRFed~t--------s~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~-~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDST--------SKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKIL-KKRPDLK 197 (674)
T ss_pred eeEEEecccC--------CCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHH-hcCCCce
Confidence 1 2222211 224579999999999887764 4488999999999994 221111 11233333 2357789
Q ss_pred eEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHh---hcCCCeEEEEeCCccc
Q 010672 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED---IMDGSRILIFMDTKKG 356 (504)
Q Consensus 280 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~~lIf~~s~~~ 356 (504)
+|++|||+. .+.+...|...|+..+-+.. ..++..+...+..+.+...+..+.+ ..+.+-+|||....++
T Consensus 198 lIimSATld--a~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 198 LIIMSATLD--AEKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred EEEEeeeec--HHHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 999999985 34455555554665544332 2233333333444444444433322 2345679999999999
Q ss_pred HHHHHHHHhhC------CC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC-------
Q 010672 357 CDQITRQLRMD------GW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------- 421 (504)
Q Consensus 357 ~~~l~~~L~~~------~~--~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~------- 421 (504)
.+.+++.|.+. +. -+..+||.++.+++..+++--..|..+|+++|++++..|.||++.+||+-++
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999999764 11 2467999999999999999888999999999999999999999999996553
Q ss_pred -----------CCCHhHHHHHhcccccCCCcceEEEEecccc
Q 010672 422 -----------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (504)
Q Consensus 422 -----------p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~ 452 (504)
|-|.++-.||.|||||. ..|.|+-++++.+
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~ 391 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESA 391 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHH
Confidence 34888999999999999 7899999999764
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=1.9e-22 Score=214.33 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=180.2
Q ss_pred CcHHHHHHHHHHh----c------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010672 122 PTPIQAQGWPMAL----K------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (504)
Q Consensus 122 ~~~~Q~~~i~~~l----~------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 191 (504)
++++|..|+..+. . .+..+++++||||||++++..+ ..+... ...++||||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 7889999998764 2 2469999999999999866543 333321 2367899999999999999999
Q ss_pred HHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHcc--Ccccccc-cEEEEcCccccccCCcHHHH
Q 010672 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH--NTNLRRV-TYLVLDEADRMLDMGFEPQI 267 (504)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~--~~~l~~~-~~lV~DEah~~~~~~~~~~~ 267 (504)
+..++.... ....+.......+. ....|+|+|.++|...+... ....... .+||+||||+..... +
T Consensus 313 f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~----~ 382 (667)
T TIGR00348 313 FQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE----L 382 (667)
T ss_pred HHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----H
Confidence 999864211 11111112222222 23689999999997644321 1111111 289999999975433 3
Q ss_pred HHHHHhcCCCCceEEecCCCcHHHHH-HHHHhh---cCCeEEE-----------------EcCCCccc-ccce----eee
Q 010672 268 KKILSQIRPDRQTLYWSATWPKEVEH-LARQYL---YNPYKVI-----------------IGSPDLKA-NHAI----RQH 321 (504)
Q Consensus 268 ~~il~~~~~~~~~i~~SAT~~~~~~~-~~~~~~---~~~~~~~-----------------~~~~~~~~-~~~~----~~~ 321 (504)
...+...-++...++||||+-..... -...+. .+++... ........ ...+ ...
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 34443333677899999998432110 001111 1221111 00000000 0000 000
Q ss_pred eee----cC-------------------hhHHHHHHHHHH----HhhcC--CCeEEEEeCCcccHHHHHHHHhhC-----
Q 010672 322 VDI----VS-------------------ESQKYNKLVKLL----EDIMD--GSRILIFMDTKKGCDQITRQLRMD----- 367 (504)
Q Consensus 322 ~~~----~~-------------------~~~k~~~l~~~l----~~~~~--~~~~lIf~~s~~~~~~l~~~L~~~----- 367 (504)
+.. .. .+.....+...+ ..... ..+++|||.++.+|..+.+.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000 00 001111111112 11112 368999999999999999988654
Q ss_pred CCCeEEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEcCCCCCH
Q 010672 368 GWPALSIHGDKSQA---------------------ERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 425 (504)
Q Consensus 368 ~~~~~~ih~~~~~~---------------------~r~~~~~~f~~-g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~ 425 (504)
+..+..+++..+.. ....++++|++ +.++|||+++++.+|+|.|.+++++...+..+
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~- 621 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY- 621 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-
Confidence 23455566543322 23468889976 68899999999999999999999988776665
Q ss_pred hHHHHHhcccccC
Q 010672 426 EDYVHRIGRTGRA 438 (504)
Q Consensus 426 ~~~~QriGR~gR~ 438 (504)
..++|++||+.|.
T Consensus 622 h~LlQai~R~nR~ 634 (667)
T TIGR00348 622 HGLLQAIARTNRI 634 (667)
T ss_pred cHHHHHHHHhccc
Confidence 4689999999993
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.1e-22 Score=193.34 Aligned_cols=168 Identities=21% Similarity=0.290 Sum_probs=133.3
Q ss_pred CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHh-hcCCCeEEEEeCCcc
Q 010672 277 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKK 355 (504)
Q Consensus 277 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lIf~~s~~ 355 (504)
..|+|++|||+.+.-.+... .+-+..++....+ +...+.+.+....++.|+..++. ...+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGL-----lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGL-----LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCC-----CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999998764433322 1223333333332 22233444455566777766665 445679999999999
Q ss_pred cHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC-----CCCHhHHHH
Q 010672 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYVH 430 (504)
Q Consensus 356 ~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~-----p~s~~~~~Q 430 (504)
.|+.|.++|.+.|+++..+|++...-+|.+++.+.+.|.++|||..+.+-+|+|+|.|..|..+|. ..|-.+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875 458899999
Q ss_pred HhcccccCCCcceEEEEeccccH
Q 010672 431 RIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 431 riGR~gR~g~~g~~~~~~~~~~~ 453 (504)
-||||+|. ..|.++++.+.-..
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~ 559 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITD 559 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhH
Confidence 99999998 78999999876443
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=9.6e-23 Score=208.05 Aligned_cols=296 Identities=20% Similarity=0.225 Sum_probs=189.7
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 120 FEPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
..++++|..||..+. .|+ .+|+++.||+|||.+++. ++..|... +..++||+|+.+++|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 368999999997654 444 499999999999998554 55555543 2367899999999999999999999
Q ss_pred hcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-----CcccccccEEEEcCccccccCCcHHHHHH
Q 010672 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDMGFEPQIKK 269 (504)
Q Consensus 195 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----~~~l~~~~~lV~DEah~~~~~~~~~~~~~ 269 (504)
|.+...... .+.+ ... ...++|.++|++.+...+... .+....+++||+||||+-. ......
T Consensus 238 ~~P~~~~~n-~i~~-~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFGTKMN-KIED-KKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCcccee-eeec-ccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 876533221 1111 111 125799999999998877654 2345568999999999954 334446
Q ss_pred HHHhcCCCCceEEecCCCcHHHHHHHHHhh-cCCeEEE--------------------E--cCCCccccc---c------
Q 010672 270 ILSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVI--------------------I--GSPDLKANH---A------ 317 (504)
Q Consensus 270 il~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~--------------------~--~~~~~~~~~---~------ 317 (504)
|+..+..- ++++|||+...+..-...++ ..|.... . ......... .
T Consensus 305 I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 66666433 34449998664333222222 3332211 1 000000000 0
Q ss_pred -e---eeeeeecC------hhHHHHHHHHHHHhhcC-------CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEec
Q 010672 318 -I---RQHVDIVS------ESQKYNKLVKLLEDIMD-------GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIH 375 (504)
Q Consensus 318 -~---~~~~~~~~------~~~k~~~l~~~l~~~~~-------~~~~lIf~~s~~~~~~l~~~L~~~-----~~~~~~ih 375 (504)
+ .+.+...+ -......+...+.+... -+|+||||.+..+|+.+...|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0 01111110 01122223333333222 248999999999999999999764 22356677
Q ss_pred CCCCHHHHHHHHHHHhc-CC-CcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC
Q 010672 376 GDKSQAERDWVLSEFKA-GK-SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (504)
Q Consensus 376 ~~~~~~~r~~~~~~f~~-g~-~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~ 438 (504)
++-.+. +. .++.|.. .. ..|.|+.+++.+|||+|.|..+|++....|...|.||+||.-|.
T Consensus 463 ~d~~~~-q~-~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQA-QA-LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhh-HH-HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 765432 23 3444543 44 45677779999999999999999999999999999999999993
No 112
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=2.8e-22 Score=210.67 Aligned_cols=316 Identities=21% Similarity=0.255 Sum_probs=222.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCC
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSK 200 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~ 200 (504)
.+..+.+.+.++.+.+.+++++.||+|||+..--.+|....... ...++++--|.|--|..+++.+.. .+...+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 36678888888889999999999999999975555666655432 466799999999888777777654 333333
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc-ccccCCcHHHHHHHHHhcCCCCc
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRPDRQ 279 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah-~~~~~~~~~~~~~il~~~~~~~~ 279 (504)
-.|.--...... ......+++||.+.|++.+.. ...+..+++||+||+| +-.+.+|.-.+.+.+-..+++.+
T Consensus 249 ~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 222111111111 122357999999999999988 5568899999999999 45566677777777777789999
Q ss_pred eEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCc--------------ccccceeee------------eeecChhHHHHH
Q 010672 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL--------------KANHAIRQH------------VDIVSESQKYNK 333 (504)
Q Consensus 280 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------------~~~~~~~~k~~~ 333 (504)
+|+||||+. .+.+...|...|+..+.+.... .......+. +.....+.....
T Consensus 322 vILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 322 VILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 999999986 3333333433343332211100 000000000 111122223333
Q ss_pred HHHHHH---hhcCCCeEEEEeCCcccHHHHHHHHhhC-------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 334 LVKLLE---DIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 334 l~~~l~---~~~~~~~~lIf~~s~~~~~~l~~~L~~~-------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
+.+++. +....+.+|||.+...+...+.+.|... .+-+..+|+.|+..+++.++...-.|..+|++||++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 334433 3334568999999999999999999642 255778999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcC--------CCC----------CHhHHHHHhcccccCCCcceEEEEecccc
Q 010672 404 AARGLDVKDVKYVINYD--------FPG----------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~--------~p~----------s~~~~~QriGR~gR~g~~g~~~~~~~~~~ 452 (504)
++..|.|++|-+||+.+ +-. |...-.||.|||||. +.|.||.+++...
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 99999999999999544 322 567788999999999 9999999998753
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=2.5e-21 Score=212.18 Aligned_cols=346 Identities=18% Similarity=0.217 Sum_probs=215.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~----~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
+++.+.+.+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.++.. +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCc
Confidence 334666677677774 8999998665 44567889999999999999999999887652 4579999999
Q ss_pred HHHHHHHHH-HHHHhcCCC--CceEEEEECCCCCh---------------Hh----------------------------
Q 010672 182 RELAVQIQQ-ESTKFGASS--KIKSTCIYGGVPKG---------------PQ---------------------------- 215 (504)
Q Consensus 182 ~~L~~q~~~-~~~~~~~~~--~~~~~~~~gg~~~~---------------~~---------------------------- 215 (504)
++|..|+.. .+..+.... .++++.+.|....- ..
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 444443322 36666665543210 00
Q ss_pred ----H------------------------HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-----
Q 010672 216 ----V------------------------RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG----- 262 (504)
Q Consensus 216 ----~------------------------~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~----- 262 (504)
+ ......++|||++...|+..+.....-+....+|||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0 0111235899999998887765443335566899999999865310
Q ss_pred --c-----HHH----------------------------------------------------------------HHHHH
Q 010672 263 --F-----EPQ----------------------------------------------------------------IKKIL 271 (504)
Q Consensus 263 --~-----~~~----------------------------------------------------------------~~~il 271 (504)
+ ... +...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 00000
Q ss_pred Hh-----------c-------------------------------------CCCCceEEecCCCcH--HHHHHHHHhhcC
Q 010672 272 SQ-----------I-------------------------------------RPDRQTLYWSATWPK--EVEHLARQYLYN 301 (504)
Q Consensus 272 ~~-----------~-------------------------------------~~~~~~i~~SAT~~~--~~~~~~~~~~~~ 301 (504)
.. + +....+|++|||+.. ....+...+..+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 012367899999863 233333333322
Q ss_pred CeE-EEE-cCCCcccccceeeeee---e-----cChhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhh---
Q 010672 302 PYK-VII-GSPDLKANHAIRQHVD---I-----VSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRM--- 366 (504)
Q Consensus 302 ~~~-~~~-~~~~~~~~~~~~~~~~---~-----~~~~~k~~~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~--- 366 (504)
... ..+ .++. ....+. ..+. . .+.......+.+.+.++. ..+++|||++|.+..+.++..|..
T Consensus 622 ~~~~~~~~~spf-~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIEPTPL-NYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceecCCCC-CHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 211 111 1111 101111 1110 0 112233334444444431 346899999999999999999975
Q ss_pred -CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC--EEEEcCCCC--------------------
Q 010672 367 -DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK--YVINYDFPG-------------------- 423 (504)
Q Consensus 367 -~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~--~VI~~~~p~-------------------- 423 (504)
.++++ +..+.. ..|..++++|++++..||++|+.+++|||+|+.. .||...+|.
T Consensus 700 ~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 23332 333333 4788999999999999999999999999999865 566666553
Q ss_pred ----------CHhHHHHHhcccccCCCcceEEEEeccc--cHHHHHHHHHHHHH
Q 010672 424 ----------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEE 465 (504)
Q Consensus 424 ----------s~~~~~QriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~ 465 (504)
-...+.|.+||.-|...+.-++++++.. ...+-+.+.+.|..
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 1245679999999987775566666654 56677777777754
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.2e-22 Score=204.59 Aligned_cols=289 Identities=26% Similarity=0.383 Sum_probs=194.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
.+.+.+++..-+.|+..|.--...++.|+.+-+.||||.|||+--++ +-..+.. .+.++++++||..|+.|+
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~-~sl~~a~-------kgkr~yii~PT~~Lv~Q~ 141 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLL-MSLYLAK-------KGKRVYIIVPTTTLVRQV 141 (1187)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHH-HHHHHHh-------cCCeEEEEecCHHHHHHH
Confidence 44455555555599999998888899999999999999999964333 2223222 268899999999999999
Q ss_pred HHHHHHhcCCCC-ceEEEEE-CCCCChH---hHHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC
Q 010672 189 QQESTKFGASSK-IKSTCIY-GGVPKGP---QVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (504)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~~-gg~~~~~---~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~ 262 (504)
.+.+.+|....+ ..+..+| +..+... ....+.+ +.||+|+|.+-|...+..-. --+|+++++|++|.++..+
T Consensus 142 ~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 142 YERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhcc
Confidence 999999876555 4444433 3333322 2333433 58999999877655544311 1368999999999766332
Q ss_pred -----------cHH-------HHHHHHHhc------------------------CCCCceEEecCCCcHHH--HHHHHHh
Q 010672 263 -----------FEP-------QIKKILSQI------------------------RPDRQTLYWSATWPKEV--EHLARQY 298 (504)
Q Consensus 263 -----------~~~-------~~~~il~~~------------------------~~~~~~i~~SAT~~~~~--~~~~~~~ 298 (504)
|.. .+..+...+ .+.-+++..|||..+.- ..+.+.+
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 111 011111111 13457899999964321 2233333
Q ss_pred hcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCC---cccHHHHHHHHhhCCCCeEEec
Q 010672 299 LYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT---KKGCDQITRQLRMDGWPALSIH 375 (504)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s---~~~~~~l~~~L~~~~~~~~~ih 375 (504)
+. +.++..... +...+.......-...+.++++.+.+ -.|||++. ++.+++++++|+..|+++..+|
T Consensus 300 lg----FevG~~~~~----LRNIvD~y~~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~ 369 (1187)
T COG1110 300 LG----FEVGSGGEG----LRNIVDIYVESESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIH 369 (1187)
T ss_pred hC----CccCccchh----hhheeeeeccCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEee
Confidence 32 112221111 11112221222556666777777655 48999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEc----cccccCCCCCC-CCEEEEcCCC
Q 010672 376 GDKSQAERDWVLSEFKAGKSPIMTAT----DVAARGLDVKD-VKYVINYDFP 422 (504)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~vLVaT----~~~~~Gvdi~~-v~~VI~~~~p 422 (504)
+. ....++.|..|++++||++ .++-||+|+|. ++++|+++.|
T Consensus 370 a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 370 AE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 84 2678999999999999876 47889999996 7899999988
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.1e-21 Score=202.09 Aligned_cols=316 Identities=20% Similarity=0.238 Sum_probs=214.8
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 120 FEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
..+++-|..++..+.+. ...++.+.||||||.+|+-.+-..+.. +..+|+|+|-.+|..|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 46788999999998765 569999999999999987744444443 788999999999999999999864
Q ss_pred cCCCCceEEEEECCCCChHhHHH----HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-----cHHH
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FEPQ 266 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~----~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-----~~~~ 266 (504)
.. .++.+++++.+..+.... ......|+|+|-..+ ...+.++.+||+||-|.-.-.. |...
T Consensus 269 Fg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 FG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred hC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHH
Confidence 32 567777777766554333 235689999996554 3457889999999999543211 2222
Q ss_pred HHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHH-----HHHHHHHHhh
Q 010672 267 IKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLEDI 341 (504)
Q Consensus 267 ~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~ 341 (504)
--.++..-..+..+|+-|||+. ++.+....-.....+.+..-...+.....+.+.+..+..+. ..+++.+++.
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 2233333346788999999975 44444442222223332222112222223334433333333 4555555443
Q ss_pred -cCCCeEEEEeCCcccH------------------------------------------------------------HHH
Q 010672 342 -MDGSRILIFMDTKKGC------------------------------------------------------------DQI 360 (504)
Q Consensus 342 -~~~~~~lIf~~s~~~~------------------------------------------------------------~~l 360 (504)
..+.++|+|.|.+-.+ +++
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 3456899998876543 555
Q ss_pred HHHHhhC--CCCeEEecCCCCHH--HHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCC------------C
Q 010672 361 TRQLRMD--GWPALSIHGDKSQA--ERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG------------S 424 (504)
Q Consensus 361 ~~~L~~~--~~~~~~ih~~~~~~--~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~------------s 424 (504)
++.|... +.++..+.++.+.. .-+..++.|.+|+.+|||.|.+++.|.|+|+++.|...|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 5555543 56677777776543 356789999999999999999999999999999877555332 3
Q ss_pred HhHHHHHhcccccCCCcceEEEEeccccHHH
Q 010672 425 LEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (504)
Q Consensus 425 ~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~ 455 (504)
...+.|-.|||||.+.+|.+++-.-..+...
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 5578899999999999999988776665443
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=4.3e-22 Score=209.27 Aligned_cols=128 Identities=22% Similarity=0.356 Sum_probs=114.8
Q ss_pred ecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 324 IVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
+.+..+|...+.+.+... ..+.++||||+|+..++.|++.|...++++..+|+ .+.+|+..+..|..+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 345678899999888764 34669999999999999999999999999999997 588999999999999999999999
Q ss_pred ccccCCCCC---CCC-----EEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 403 VAARGLDVK---DVK-----YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 403 ~~~~Gvdi~---~v~-----~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+++||+||+ .|. +||.+..|.|...|.|++||+||.|.+|.+++|++..|.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999 453 458999999999999999999999999999999998764
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=3.2e-21 Score=204.25 Aligned_cols=147 Identities=19% Similarity=0.309 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010672 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (504)
..++..+++.|.... .+.++||||++++.++.+++.|.+.++++..+|+++++.+|..+++.|++|.+.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 345666666666543 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCC-----CCCHhHHHHHhcccccCCCcceEEEEecc---------ccHHHHHHHHHHHHHhCCCCCH
Q 010672 407 GLDVKDVKYVINYDF-----PGSLEDYVHRIGRTGRAGAKGTAYTFFTA---------ANARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 407 Gvdi~~v~~VI~~~~-----p~s~~~~~QriGR~gR~g~~g~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~~ 472 (504)
|+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|++. .+....+++..........+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999885 78999999999999997 78999999985 3455566666667777777776
Q ss_pred HHH
Q 010672 473 ELA 475 (504)
Q Consensus 473 ~l~ 475 (504)
...
T Consensus 588 ~~~ 590 (652)
T PRK05298 588 TIK 590 (652)
T ss_pred hHH
Confidence 653
No 118
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=2e-22 Score=211.55 Aligned_cols=316 Identities=20% Similarity=0.268 Sum_probs=217.2
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.+|+.||.+.+++++ .++++|+...+|.|||+. .+.+|..+..... -.|| .|||+|...+.. |..++..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~---~~gp-flvvvplst~~~-W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ---IHGP-FLVVVPLSTITA-WEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh---ccCC-eEEEeehhhhHH-HHHHHHHH
Confidence 589999999999876 478999999999999976 3445555544321 1233 899999876654 78888887
Q ss_pred cCCCCceEEEEECCCCChHhHHHHh----c-----CCcEEEeChHHHHHHHHccCcccc--cccEEEEcCccccccCCcH
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQ----K-----GVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADRMLDMGFE 264 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~----~-----~~~Iiv~T~~~l~~~l~~~~~~l~--~~~~lV~DEah~~~~~~~~ 264 (504)
. .+++++.+|....+..++... . ..+++++|++.++.- ...|. .+.++++||||++.+..
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~~-- 513 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKNDE-- 513 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCchH--
Confidence 6 588888898887776665542 1 368999999887532 12222 45789999999998663
Q ss_pred HHHHHHHHhcCCCCceEEecCCC-cHHHHHHHHHh-hcCCeEEEE--------------------------------cCC
Q 010672 265 PQIKKILSQIRPDRQTLYWSATW-PKEVEHLARQY-LYNPYKVII--------------------------------GSP 310 (504)
Q Consensus 265 ~~~~~il~~~~~~~~~i~~SAT~-~~~~~~~~~~~-~~~~~~~~~--------------------------------~~~ 310 (504)
..+...+..+..+- .+++|.|+ .+.+.++.... +..|..+.. ...
T Consensus 514 ~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv 592 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV 592 (1373)
T ss_pred HHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh
Confidence 34444466664443 56677774 23344433211 011100000 000
Q ss_pred Ccccccceeeeeee------------------------------------------c-------Ch-------------h
Q 010672 311 DLKANHAIRQHVDI------------------------------------------V-------SE-------------S 328 (504)
Q Consensus 311 ~~~~~~~~~~~~~~------------------------------------------~-------~~-------------~ 328 (504)
+...+...++.+.+ + .. .
T Consensus 593 ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d 672 (1373)
T KOG0384|consen 593 EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRD 672 (1373)
T ss_pred ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchH
Confidence 00000001111100 0 00 0
Q ss_pred HHHHH----------HHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC---C
Q 010672 329 QKYNK----------LVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG---K 394 (504)
Q Consensus 329 ~k~~~----------l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g---~ 394 (504)
..++. |-.+|..+. .+++||||.+..+..+.|+++|...+|+..-|.|.+..+.|+.+++.|++- .
T Consensus 673 ~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sdd 752 (1373)
T KOG0384|consen 673 EALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDD 752 (1373)
T ss_pred HHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCc
Confidence 11111 223333333 347999999999999999999999999999999999999999999999954 6
Q ss_pred CcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcce--EEEEeccc
Q 010672 395 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT--AYTFFTAA 451 (504)
Q Consensus 395 ~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~--~~~~~~~~ 451 (504)
..+|+||.+.+-|||+..++.||+||..|||..-+|...||.|.|++.. +|-|++.+
T Consensus 753 FvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 753 FVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred eEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 6799999999999999999999999999999999999999999999865 45566665
No 119
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=7.1e-22 Score=195.38 Aligned_cols=306 Identities=21% Similarity=0.302 Sum_probs=216.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-h---
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-F--- 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~--- 195 (504)
...+++-.+.+.++..++-++|.+.||||||+. +|-+ |...... ..+.++-+--|.|--|..+.....+ .
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQy--L~EaGyt--k~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQY--LYEAGYT--KGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHH--HHhcccc--cCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 345677788888888889999999999999985 4433 3332211 2255588888999888777665543 2
Q ss_pred -cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc-cccCCcHHHHHHHHHh
Q 010672 196 -GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQ 273 (504)
Q Consensus 196 -~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~-~~~~~~~~~~~~il~~ 273 (504)
+...+..+ -+.+.. ....-|-++|.+.|+.-+.. ...|..+++||+||||. -+..+..-.+-+-+..
T Consensus 338 LG~eVGYsI--RFEdcT--------SekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar 406 (902)
T KOG0923|consen 338 LGHEVGYSI--RFEDCT--------SEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR 406 (902)
T ss_pred cccccceEE--Eecccc--------CcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHh
Confidence 22222221 111111 12335679999999887665 45588999999999993 3333322233444566
Q ss_pred cCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh---cCCCeEEEE
Q 010672 274 IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIF 350 (504)
Q Consensus 274 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lIf 350 (504)
++|+.++++.|||+. .+.+...|-.-|++..-+. ...+...+...++.+.++..+..+.++ .+.+-+|||
T Consensus 407 ~RpdLKllIsSAT~D--AekFS~fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 407 FRPDLKLLISSATMD--AEKFSAFFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred hCCcceEEeeccccC--HHHHHHhccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEE
Confidence 789999999999985 3555555555566554332 223444555566667777666555443 244679999
Q ss_pred eCCcccHHHHHHHHhhC---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC
Q 010672 351 MDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 421 (504)
Q Consensus 351 ~~s~~~~~~l~~~L~~~---------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~ 421 (504)
....++.+...+.|.+. .+-+..||+.++.+.+..|++--..|..+|++||++++..+.|+++.+||.-++
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99998887777776542 345778999999999999999999999999999999999999999999996543
Q ss_pred ------------------CCCHhHHHHHhcccccCCCcceEEEEecc
Q 010672 422 ------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (504)
Q Consensus 422 ------------------p~s~~~~~QriGR~gR~g~~g~~~~~~~~ 450 (504)
|-|.++-.||.|||||. .+|.|+-+++.
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt-gPGKCfRLYt~ 605 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT-GPGKCFRLYTA 605 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCC-CCCceEEeech
Confidence 34788899999999999 68999999984
No 120
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=1.5e-20 Score=194.69 Aligned_cols=321 Identities=22% Similarity=0.242 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHHHhc---CC-------cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALK---GR-------DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~---~~-------~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~ 190 (504)
.++|+|.+++..+.. |. .+|+...+|+|||+..+ +++..++++.+....--.+.|||+|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 579999999987653 22 38888999999999844 45555544322211123668999997 78899999
Q ss_pred HHHHhcCCCCceEEEEECCCCC-hH---hHHHH---hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc
Q 010672 191 ESTKFGASSKIKSTCIYGGVPK-GP---QVRDL---QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (504)
Q Consensus 191 ~~~~~~~~~~~~~~~~~gg~~~-~~---~~~~~---~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~ 263 (504)
+|.++.....+....+++.... .. .+..+ .-...|++.+++.+.+.+.. ..+..+++||+||.|++-+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 9999987666777778877653 00 01100 11245788899988765543 34567899999999998776
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCc-HHHHH-------------------------------------------------
Q 010672 264 EPQIKKILSQIRPDRQTLYWSATWP-KEVEH------------------------------------------------- 293 (504)
Q Consensus 264 ~~~~~~il~~~~~~~~~i~~SAT~~-~~~~~------------------------------------------------- 293 (504)
...+.+.+..+. .++.|++|+|+= +++.+
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 456666777774 455777899931 11111
Q ss_pred --HHHHhh------------cCCeEEEE--cCCC-------------------------------------c--------
Q 010672 294 --LARQYL------------YNPYKVII--GSPD-------------------------------------L-------- 312 (504)
Q Consensus 294 --~~~~~~------------~~~~~~~~--~~~~-------------------------------------~-------- 312 (504)
+...++ ..-....+ .... +
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 111110 00000000 0000 0
Q ss_pred ----ccc-------cceeeeeeecChhHHHHHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 313 ----KAN-------HAIRQHVDIVSESQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 313 ----~~~-------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
..+ ..............|+..|..++...... .++.+..+.+...+.+....+-.|+.+..+||.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 000 00000000001134555555555333221 23444445555556666666667999999999999
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEe
Q 010672 380 QAERDWVLSEFKAGKS--P-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 448 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~~--~-vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~ 448 (504)
..+|+.+++.|++-.. . +|.+|.+.+.|||+-+++.||.||++|||+.-.|.+.|+.|.||+..|+++-
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999996533 3 4567789999999999999999999999999999999999999998777654
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.3e-20 Score=191.26 Aligned_cols=314 Identities=20% Similarity=0.206 Sum_probs=220.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|++.|.-+.-.+++| -|+.+.||+|||+++.+|++...+. +..|.|++|+.-||.|-++++..+...++
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 6788888888777765 5789999999999999998877765 67799999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHH-HHHHc------cCcccccccEEEEcCccccc-cC-----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLES------HNTNLRRVTYLVLDEADRML-DM----------- 261 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~------~~~~l~~~~~lV~DEah~~~-~~----------- 261 (504)
+.+.++.+..+...... .-.|+|+.+|...|- ++|.. .......+.+.|+||+|.++ |.
T Consensus 148 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 148 LTVGWITEESTPEERRA--AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred CEEEEECCCCCHHHHHH--HHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 99999988766543333 336899999987652 22221 12234568899999999755 10
Q ss_pred ---CcHHHHHHHHHhcCCC-------------------------------------------------------------
Q 010672 262 ---GFEPQIKKILSQIRPD------------------------------------------------------------- 277 (504)
Q Consensus 262 ---~~~~~~~~il~~~~~~------------------------------------------------------------- 277 (504)
.....+..++..+.+.
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0001111111111110
Q ss_pred ---------------------------------------------------------CceEEecCCCcHHHHHHHHHhhc
Q 010672 278 ---------------------------------------------------------RQTLYWSATWPKEVEHLARQYLY 300 (504)
Q Consensus 278 ---------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~ 300 (504)
..+.+||+|......++...|..
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 13345666655544444444433
Q ss_pred CCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+-+. +.... ...........+.+..+|...+++.+.+. ..+.||||.|.+....+.++..|.+.+++...+++.-.
T Consensus 386 ~Vv~--IPtnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVSV--IPPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEEE--CCCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 3221 11110 11111112234456677888888777554 56679999999999999999999999999999998755
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEccccccCCCCCCC---------------CEEEEcCCCCCHhHHHHHhcccccCCCcce
Q 010672 380 QAERDWVLSEFKAGK-SPIMTATDVAARGLDVKDV---------------KYVINYDFPGSLEDYVHRIGRTGRAGAKGT 443 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~-~~vLVaT~~~~~Gvdi~~v---------------~~VI~~~~p~s~~~~~QriGR~gR~g~~g~ 443 (504)
..+-+.+-+ .|+ -.|-|||++++||.||.-- =+||-...+.|..--.|-.||+||.|.+|.
T Consensus 463 ~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 433222222 343 3599999999999998621 278989999999999999999999999999
Q ss_pred EEEEecccc
Q 010672 444 AYTFFTAAN 452 (504)
Q Consensus 444 ~~~~~~~~~ 452 (504)
+..|++-.|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999998765
No 122
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=3.3e-21 Score=191.01 Aligned_cols=303 Identities=20% Similarity=0.255 Sum_probs=202.5
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceE
Q 010672 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (504)
Q Consensus 125 ~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~~ 203 (504)
.+.+.+..+-.++-++++++||||||+. +-+++.... -.+...+-+--|.|.-|..++..... .+..++-.|
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edG---Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDG---YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcc---cccCCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 3444444455567789999999999986 333343322 12244577778998888777766654 332333222
Q ss_pred --EEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc-cccCCcHHHHHHHHHhcCCCCce
Q 010672 204 --TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQIRPDRQT 280 (504)
Q Consensus 204 --~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~-~~~~~~~~~~~~il~~~~~~~~~ 280 (504)
..-+.+.. .....|-+.|.+.|+.-... ...|.++++||+||||. -++.+..--+.+.+-.-+.+.++
T Consensus 433 GYsIRFEdvT--------~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 433 GYSIRFEDVT--------SEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred ceEEEeeecC--------CCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 11111111 12345779999998876544 34477899999999994 33333222233333334568899
Q ss_pred EEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccH
Q 010672 281 LYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGC 357 (504)
Q Consensus 281 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lIf~~s~~~~ 357 (504)
|.+|||+. .+.+...|...|.+.+-+... .+...+.-.+.++.+...+...-.+ ...+-+|||....+..
T Consensus 504 iVtSATm~--a~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 504 IVTSATMD--AQKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred EEeecccc--HHHHHHHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcch
Confidence 99999984 566777776677766544422 1233333334444444443322222 2345799999988766
Q ss_pred HHHHHHH----hhC------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC------
Q 010672 358 DQITRQL----RMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF------ 421 (504)
Q Consensus 358 ~~l~~~L----~~~------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~------ 421 (504)
+-.+..+ .+. ++.+..|++.++..-+.++++.-..|..+++|||++++..+.||++.+||..++
T Consensus 577 E~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred hHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 5554444 332 577889999999999999999989999999999999999999999999997653
Q ss_pred ------------CCCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 422 ------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 422 ------------p~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
|-|-+.-.||.|||||. .+|.||-++++.
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 44777889999999999 689999999973
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1.3e-20 Score=171.85 Aligned_cols=187 Identities=44% Similarity=0.637 Sum_probs=155.2
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 117 AGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.++.+|+++|.++++.++.. +.+++.++||+|||.+++.+++..+.... ..++||++|++.++.|+.+.+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45778999999999999998 99999999999999998888887766532 456999999999999999999988
Q ss_pred cCCCCceEEEEECCCCChHhHHHHhcCC-cEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~-~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~ 274 (504)
............++.........+..+. +|+++|++.+.+.+.........++++|+||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7665545555666655555666666666 999999999999988866677788999999999998756788888898888
Q ss_pred CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcC
Q 010672 275 RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (504)
Q Consensus 275 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (504)
.+..+++++|||+++........+......+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999989888888887666655443
No 124
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=2.9e-21 Score=198.22 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASS 199 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~ 199 (504)
.|..||.+.+..+-.+..++++|||.+|||++-.- ++...+.. .+...||+++||++|++|+...... |-...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 57889999999999999999999999999987433 44444432 2466799999999999999877664 42222
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc---cCcccccccEEEEcCccccccCCcHHHHHHHHHhcCC
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~---~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~ 276 (504)
-.+...+.|......++. .-.|.|+|+-|+.+..++.+ ......++.++|+||+|.+.++.-...++.++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 223333444332222221 22589999999999888877 34567889999999999998776444555555444
Q ss_pred CCceEEecCCCc
Q 010672 277 DRQTLYWSATWP 288 (504)
Q Consensus 277 ~~~~i~~SAT~~ 288 (504)
.+.++.+|||..
T Consensus 661 ~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 PCPFLVLSATIG 672 (1330)
T ss_pred CCCeeEEecccC
Confidence 355899999964
No 125
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.86 E-value=3.2e-20 Score=194.44 Aligned_cols=323 Identities=20% Similarity=0.217 Sum_probs=216.7
Q ss_pred CCcHHHHHHHHHHh--c--CCcEEEEccCCCchHHHHHHHHHHHHhcC-CCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 121 EPTPIQAQGWPMAL--K--GRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l--~--~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.++.||++.++++. . +-+-|+|..+|.|||+..+-.+....... .....-.....|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 46899999999864 2 45799999999999998654333333222 11111123338999997 7999999999999
Q ss_pred cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
.+. +++....|....+...+.--+..+|+|++++.+.+-+.. +.-.++.|.|+||-|-|.+. ...+.+.+.+++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 887 666666666555555555555679999999887532221 11124679999999998776 566777777776
Q ss_pred CCCceEEecCCCc-HHHHH-------------------------------------------------------------
Q 010672 276 PDRQTLYWSATWP-KEVEH------------------------------------------------------------- 293 (504)
Q Consensus 276 ~~~~~i~~SAT~~-~~~~~------------------------------------------------------------- 293 (504)
.+. .+.+|+|+- +++.+
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 554 556788821 00000
Q ss_pred HHHHhhcC-C-----------------------------eEEEEcCCCccccc---ce---eeee---------ee----
Q 010672 294 LARQYLYN-P-----------------------------YKVIIGSPDLKANH---AI---RQHV---------DI---- 324 (504)
Q Consensus 294 ~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~---~~---~~~~---------~~---- 324 (504)
+-...+.+ | +...+......... ++ .|+. ..
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00000100 0 00000000000000 00 0000 00
Q ss_pred -------------------cChhHHHHHHHHHHHhhc---------------CCCeEEEEeCCcccHHHHHHHHhhCCC-
Q 010672 325 -------------------VSESQKYNKLVKLLEDIM---------------DGSRILIFMDTKKGCDQITRQLRMDGW- 369 (504)
Q Consensus 325 -------------------~~~~~k~~~l~~~l~~~~---------------~~~~~lIf~~s~~~~~~l~~~L~~~~~- 369 (504)
+....|+..|.++|.+.. .++++||||+-+...+.+.+-|-+...
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 012456666777765532 235999999999999999998876533
Q ss_pred --CeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEE
Q 010672 370 --PALSIHGDKSQAERDWVLSEFKAG-KSPIMT-ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 445 (504)
Q Consensus 370 --~~~~ih~~~~~~~r~~~~~~f~~g-~~~vLV-aT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~ 445 (504)
....+.|..++.+|.++.++|+++ .++||+ +|.+.+-|+|+.+++.||+++-.|||-.-.|.+.||.|.|++.++-
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 344789999999999999999999 788875 6699999999999999999999999999999999999999987554
Q ss_pred --EEeccc
Q 010672 446 --TFFTAA 451 (504)
Q Consensus 446 --~~~~~~ 451 (504)
-+++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 455554
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=6.8e-20 Score=192.25 Aligned_cols=315 Identities=18% Similarity=0.209 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|...- +.-.+.-|+.+.||+|||+++.+|++...+. +..|.|++|+.-||.|-++++..+...++
T Consensus 82 ~~ydVQliGg--~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLIGG--MTLHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHHhh--hHhccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4555665443 3334668899999999999999999877665 66799999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc------CcccccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.+.++.+..+.......+ .++|+++|...| .|+|... ......+.++|+||+|.++ |..
T Consensus 152 l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 9999998876654443333 389999999886 2333322 1124778999999999765 110
Q ss_pred -----cHHHHHHHHHhcCC-------------------CC----------------------------------------
Q 010672 263 -----FEPQIKKILSQIRP-------------------DR---------------------------------------- 278 (504)
Q Consensus 263 -----~~~~~~~il~~~~~-------------------~~---------------------------------------- 278 (504)
....+..++..+.. ..
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 00111111111100 00
Q ss_pred ----------------------------------------------------------------------------ceEE
Q 010672 279 ----------------------------------------------------------------------------QTLY 282 (504)
Q Consensus 279 ----------------------------------------------------------------------------~~i~ 282 (504)
++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 2223
Q ss_pred ecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH
Q 010672 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT 361 (504)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~ 361 (504)
||+|...+..++..-|..+-+.+-... ...........+.+..+|...+++.+... ..+.||||-+.|....+.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnk---P~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 390 MTGTADTEAFEFRQIYGLDVVVIPPNK---PLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred CCCCCHHHHHHHHHHhCCCEEECCCCC---CcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 333333333333222222211111000 00001112234456678888888877665 45669999999999999999
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEccccccCCCCC-----------------------------
Q 010672 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIMTATDVAARGLDVK----------------------------- 411 (504)
Q Consensus 362 ~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~vLVaT~~~~~Gvdi~----------------------------- 411 (504)
+.|...+++..++++.....+-+.+- ..| .-.|-|||++++||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999998888875443333333 345 345999999999999995
Q ss_pred --------CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 412 --------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 412 --------~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+==+||-...+.|..--.|-.||+||-|.+|.+..|++-.|.
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112788888999999999999999999999999999987653
No 127
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=2.2e-20 Score=188.43 Aligned_cols=319 Identities=22% Similarity=0.275 Sum_probs=219.1
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+|-+||.-.++++. ++-+.|+..++|.|||.. .++.+..+..... .+| -|||||...|-+ |..++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~----~gp-HLVVvPsSTleN-WlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN----PGP-HLVVVPSSTLEN-WLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC----CCC-cEEEecchhHHH-HHHHHHHhC
Confidence 58899999999864 344689999999999977 5557777766421 233 799999987754 889999999
Q ss_pred CCCCceEEEEECCCCChHhHHHHh----cCCcEEEeChHHHHHHHH-ccCcccccccEEEEcCccccccCCcHHHHHHHH
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~----~~~~Iiv~T~~~l~~~l~-~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il 271 (504)
+. ++|.+.||....+.+++... .+.+|+++|+.....--. +..+.-.+++++|+||+|.+.++. ...++.+.
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 77 78888999876655554432 257999999865531100 001123467899999999988876 44455443
Q ss_pred HhcCCCCceEEecCCCc-HHHHHHHH------------------------------------------------------
Q 010672 272 SQIRPDRQTLYWSATWP-KEVEHLAR------------------------------------------------------ 296 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT~~-~~~~~~~~------------------------------------------------------ 296 (504)
. + +..+.|++|+|+- +++.++..
T Consensus 549 ~-I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 S-I-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred c-c-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 2 2 3455677888831 11111000
Q ss_pred ----Hhhc---CCe-EEEE--------------------cCCCcc-----------------ccccee--eeee------
Q 010672 297 ----QYLY---NPY-KVII--------------------GSPDLK-----------------ANHAIR--QHVD------ 323 (504)
Q Consensus 297 ----~~~~---~~~-~~~~--------------------~~~~~~-----------------~~~~~~--~~~~------ 323 (504)
..+. ... .+.. ...... +++.+. +.+.
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 0000 000 0000 000000 000000 0000
Q ss_pred -------------------------------------------------ecChhHHHHHHHHHHHhhcC-CCeEEEEeCC
Q 010672 324 -------------------------------------------------IVSESQKYNKLVKLLEDIMD-GSRILIFMDT 353 (504)
Q Consensus 324 -------------------------------------------------~~~~~~k~~~l~~~l~~~~~-~~~~lIf~~s 353 (504)
..-...|...|..+|.+... +.+||||.+.
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 00124567777777777654 4699999999
Q ss_pred cccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHH
Q 010672 354 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SP-IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 431 (504)
Q Consensus 354 ~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~-~~-vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~Qr 431 (504)
-...+.|...|...++...-+.|...-.+|+.+++.|...+ +. +|++|.+.+-|||+..+++||.+|...||-+-.|.
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999999763 33 67899999999999999999999999999999999
Q ss_pred hcccccCCCcce--EEEEeccc
Q 010672 432 IGRTGRAGAKGT--AYTFFTAA 451 (504)
Q Consensus 432 iGR~gR~g~~g~--~~~~~~~~ 451 (504)
--||.|.|+... ++.+++.+
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecC
Confidence 999999998864 45566665
No 128
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=1.9e-18 Score=186.99 Aligned_cols=327 Identities=20% Similarity=0.240 Sum_probs=202.7
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH-HHHHHHh
Q 010672 121 EPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKF 195 (504)
Q Consensus 121 ~~~~~Q~~~i~~~----l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~-~~~~~~~ 195 (504)
++++-|.+-...+ ..++.+++.|+||+|||++|++|++... .+++++|++||++|++|+ .+.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 7899999944433 3467799999999999999999988753 146799999999999999 4667766
Q ss_pred cCCCCceEEEEECCCCChH-----------------------------------------------hHHHH---------
Q 010672 196 GASSKIKSTCIYGGVPKGP-----------------------------------------------QVRDL--------- 219 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~-----------------------------------------------~~~~~--------- 219 (504)
....++.+.++.|+.+.-. .+..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 6666677766665433100 00000
Q ss_pred ---------------hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-----cH-------H-------
Q 010672 220 ---------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FE-------P------- 265 (504)
Q Consensus 220 ---------------~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-----~~-------~------- 265 (504)
...++|+|++...|...+.... .+...++|||||||++.+.. .. .
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 1124899999988877664433 35678999999999865311 00 0
Q ss_pred -------------------------------------------HHHHH--------HHh---------c-----------
Q 010672 266 -------------------------------------------QIKKI--------LSQ---------I----------- 274 (504)
Q Consensus 266 -------------------------------------------~~~~i--------l~~---------~----------- 274 (504)
.+..+ ... +
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 00000 000 0
Q ss_pred ----------------CCCCceEEecCCCc--HHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeee----c-----Ch
Q 010672 275 ----------------RPDRQTLYWSATWP--KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI----V-----SE 327 (504)
Q Consensus 275 ----------------~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~ 327 (504)
+....+|++|||++ +.. .+...+..+..... ..+. .... .+.+.+ . .+
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~-~~~~--~~~~-~~~~~i~~~~p~~~~~~~ 629 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFH-KIEK--DKKQ-DQLVVVDQDMPLVTETSD 629 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCcccee-cCCC--ChHH-ccEEEeCCCCCCCCCCCh
Confidence 01135688888885 222 23333322211111 1110 0000 111111 1 12
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010672 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (504)
+.....+.+.+..+. .++++||+++|.+..+.+++.|....+++ ...|... .+..++++|++++..||++|+.+++
T Consensus 630 ~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwE 706 (820)
T PRK07246 630 EVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhC
Confidence 333445555443332 35689999999999999999997655544 4444222 2456899999988899999999999
Q ss_pred CCCCCC--CCEEEEcCCCC------------------------------CHhHHHHHhcccccCCCcceEEEEeccc--c
Q 010672 407 GLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--N 452 (504)
Q Consensus 407 Gvdi~~--v~~VI~~~~p~------------------------------s~~~~~QriGR~gR~g~~g~~~~~~~~~--~ 452 (504)
|||+|. ...||...+|. -...+.|.+||.-|...+--++++++.. .
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~ 786 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILT 786 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccc
Confidence 999973 55566666553 1345779999999987654455555544 5
Q ss_pred HHHHHHHHHHHHH
Q 010672 453 ARFAKELITILEE 465 (504)
Q Consensus 453 ~~~~~~l~~~l~~ 465 (504)
+.|-+.+++.|-+
T Consensus 787 k~Yg~~~l~sLP~ 799 (820)
T PRK07246 787 KSYGKQILASLAE 799 (820)
T ss_pred cHHHHHHHHhCCC
Confidence 6677777776643
No 129
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.84 E-value=1.4e-19 Score=173.88 Aligned_cols=313 Identities=16% Similarity=0.201 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 120 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..|-|+|.+.+..++. |..+++...+|.|||+.++..+..+..+.+ .|||||. .|-..|.+.+.+|.+.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp---------lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP---------LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc---------EEEEecH-HHhHHHHHHHHHhccc
Confidence 3568999999998775 667999999999999997754444433322 8999997 5677899999999876
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
..- +.++.++.+... .+.....|.|.+++.+..+-.. ..-..+.+||+||+|.+.+.. ....+.++..+....
T Consensus 267 ~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 543 445555443321 2234457999999988544221 122357899999999987765 455777777777778
Q ss_pred ceEEecCCCc-------------------HHHHHHHHHhhcCCe-EEEEcCCC------------------------c-c
Q 010672 279 QTLYWSATWP-------------------KEVEHLARQYLYNPY-KVIIGSPD------------------------L-K 313 (504)
Q Consensus 279 ~~i~~SAT~~-------------------~~~~~~~~~~~~~~~-~~~~~~~~------------------------~-~ 313 (504)
++|++|.|+. ++..+++..|+.-.. .+...... + .
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999941 112333333332110 00000000 0 0
Q ss_pred cccceeeeeeecC-------------------------------------hhHHHHHHHHHHHhh---c--CCCeEEEEe
Q 010672 314 ANHAIRQHVDIVS-------------------------------------ESQKYNKLVKLLEDI---M--DGSRILIFM 351 (504)
Q Consensus 314 ~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~~l~~~---~--~~~~~lIf~ 351 (504)
.+....+.+.... ...|...+.+.|..+ . +..|++|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 0011111111110 112333344444441 1 234899999
Q ss_pred CCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEccccccCCCCCCCCEEEEcCCCCCHhHHH
Q 010672 352 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPI-MTATDVAARGLDVKDVKYVINYDFPGSLEDYV 429 (504)
Q Consensus 352 ~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~v-LVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~ 429 (504)
......+.+...+.+.++...-|.|..+..+|....+.|+.. +..| +++..+++.|+++...+.||+..++||+.-.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999954 5554 34557789999999999999999999999999
Q ss_pred HHhcccccCCCcceEEEEec
Q 010672 430 HRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 430 QriGR~gR~g~~g~~~~~~~ 449 (504)
|.-.|+.|.|++..+.+.+.
T Consensus 580 QAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred echhhhhhccccceeeEEEE
Confidence 99999999999876655544
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.83 E-value=2.5e-20 Score=189.24 Aligned_cols=358 Identities=18% Similarity=0.215 Sum_probs=212.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 174 (504)
..|+.+.. .++..++.-+.-.+|+|+|++|++.++.+ ..-=+++.+|+|||++.|- +...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhh
Confidence 44555433 45666666677789999999999998864 2244556799999998654 433333 356
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh----------------H-------H--HHhcCCcEEEeC
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ----------------V-------R--DLQKGVEIVIAT 229 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~----------------~-------~--~~~~~~~Iiv~T 229 (504)
+|+|+|+.+|..|..+++..-. ...++...++++...... . . ....+--|+++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 9999999999999888877642 344555555544322111 0 0 111234699999
Q ss_pred hHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC-----CCCceEEecCCCc---HHHHHH-------
Q 010672 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWP---KEVEHL------- 294 (504)
Q Consensus 230 ~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~-----~~~~~i~~SAT~~---~~~~~~------- 294 (504)
++.+...-+....-+..+++||.||||+.........=...+..+. +..+.+.||||+. ...+.-
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999877666666788899999999998542211110011111111 2234678888852 111111
Q ss_pred -----------------------HHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHH---HHHHH----Hhhc--
Q 010672 295 -----------------------ARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK---LVKLL----EDIM-- 342 (504)
Q Consensus 295 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~l----~~~~-- 342 (504)
.+.++.+.-.+...-........+.+........-..+. ++-.. +...
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 111222222221111111111111111111111111111 11111 1100
Q ss_pred -----------CCCeEEEEeCCcccHHHHHHHHhh-------------CCCC--eEEecCCCCHHHHHHHHH---HHhcC
Q 010672 343 -----------DGSRILIFMDTKKGCDQITRQLRM-------------DGWP--ALSIHGDKSQAERDWVLS---EFKAG 393 (504)
Q Consensus 343 -----------~~~~~lIf~~s~~~~~~l~~~L~~-------------~~~~--~~~ih~~~~~~~r~~~~~---~f~~g 393 (504)
+..+.|-||.+.++...+++.+.. .++. +.-+.|.|+..+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 112678999998888777666532 2333 334568898888854433 23456
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCC-CcceEEEEec---------------cccHHHHH
Q 010672 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG-AKGTAYTFFT---------------AANARFAK 457 (504)
Q Consensus 394 ~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g-~~g~~~~~~~---------------~~~~~~~~ 457 (504)
+++||--..++++|||+|.++.||++++-.++-+.+|.+||+-|.. .+..+|+++. ..+.+.++
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 7889988899999999999999999999999999999999999942 2233343332 23456678
Q ss_pred HHHHHHHHhCC
Q 010672 458 ELITILEEAGQ 468 (504)
Q Consensus 458 ~l~~~l~~~~~ 468 (504)
.+++.|+.++.
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 88888888876
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.8e-18 Score=179.73 Aligned_cols=315 Identities=20% Similarity=0.242 Sum_probs=214.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|++.|.-+.-.+.. .-|+.+.||-|||+++.+|++-..+. |..|-||+...-||..=.+++..+...++
T Consensus 78 r~ydVQliGglvLh~--G~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDL--GSVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhc--CCeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 677777776655544 45899999999999999998766555 56699999999999998999999888899
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHH-HHHHcc------CcccccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.|.++..+........ .-.|||+.+|...|- ++|... ......+.+.|+||+|.++ |..
T Consensus 148 LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 99999887765544333 345899999987753 344321 1224668899999999765 110
Q ss_pred -----cHHHHHHHHHhcCC-------C-----------------------------------------------------
Q 010672 263 -----FEPQIKKILSQIRP-------D----------------------------------------------------- 277 (504)
Q Consensus 263 -----~~~~~~~il~~~~~-------~----------------------------------------------------- 277 (504)
+...+..++..+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11111122221111 0
Q ss_pred --------------------------------------------------------CceEEecCCCcHHHHHHHHHhhcC
Q 010672 278 --------------------------------------------------------RQTLYWSATWPKEVEHLARQYLYN 301 (504)
Q Consensus 278 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 301 (504)
.++.+||+|...+..++..-|..+
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 123345555444334444333222
Q ss_pred CeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCH
Q 010672 302 PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQ 380 (504)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~ 380 (504)
-+.+.... ...........+.+...|...+++.+.+. ..+.|+||.|.|...++.++..|.+.|++..++++.-..
T Consensus 386 Vv~IPTnk---P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 386 VNVVPTNK---PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred EEECCCCC---CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 22111000 00000111234456678888888777654 456799999999999999999999999999999986443
Q ss_pred HHHHHHHHHHhcC-CCcEEEEccccccCCCCCCCC--------EEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 381 AERDWVLSEFKAG-KSPIMTATDVAARGLDVKDVK--------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 381 ~~r~~~~~~f~~g-~~~vLVaT~~~~~Gvdi~~v~--------~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
.+-. ++. ..| .-.|.|||++++||.||.--. +||....+.|..--.|-.||+||.|.+|.+..|++-.
T Consensus 463 ~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 REAE-IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hHHH-HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 3322 222 456 346999999999999996322 8999999999988899999999999999999999876
Q ss_pred cH
Q 010672 452 NA 453 (504)
Q Consensus 452 ~~ 453 (504)
|.
T Consensus 540 D~ 541 (925)
T PRK12903 540 DQ 541 (925)
T ss_pred hH
Confidence 53
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=3.3e-19 Score=171.41 Aligned_cols=306 Identities=19% Similarity=0.223 Sum_probs=196.3
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..++|||.+++..+.- | +.-+++.|+|+|||++-+-++. .+ .+.+|+||.+-.-++||..++..|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4789999999998773 3 5689999999999998544332 22 4559999999999999999999987
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc--------cCcccccccEEEEcCccccccCCcHHHHH
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--------HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--------~~~~l~~~~~lV~DEah~~~~~~~~~~~~ 268 (504)
....-.++.++.+.. .....++.|+|+|+.++..--.+ ....-..+.++|+||+|.+...-|+..+.
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 655545554444322 12345789999998665321110 01112457899999999987655554444
Q ss_pred HHHHhcCCCCceEEecCCCcHHHHHHHH-HhhcCCe--------------EEEEcCCCcccccc------------eeee
Q 010672 269 KILSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPY--------------KVIIGSPDLKANHA------------IRQH 321 (504)
Q Consensus 269 ~il~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~------------~~~~ 321 (504)
-+-... .+++|||+-.+-..+.. +|+..|- .-.+...+...+-. -...
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 333333 58899997433222111 1111111 11111111100000 0011
Q ss_pred eeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHh-cCCCcEEE
Q 010672 322 VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK-AGKSPIMT 399 (504)
Q Consensus 322 ~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~-~g~~~vLV 399 (504)
...+-...|....--+++-+. .+.++|||..+.-.....+-.|.+. +|+|..++.+|..|++.|+ +..++-++
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEE
Confidence 111122334433333333322 4569999998887777777666654 7899999999999999999 45788899
Q ss_pred EccccccCCCCCCCCEEEEcCC-CCCHhHHHHHhcccccCCC------cceEEEEeccc
Q 010672 400 ATDVAARGLDVKDVKYVINYDF-PGSLEDYVHRIGRTGRAGA------KGTAYTFFTAA 451 (504)
Q Consensus 400 aT~~~~~Gvdi~~v~~VI~~~~-p~s~~~~~QriGR~gR~g~------~g~~~~~~~~~ 451 (504)
-..+....+|+|.++++|+.+. -.|-.+-.||+||..|+.+ ..-.|++++.+
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 9999999999999999997764 3577899999999999632 23445555554
No 133
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.3e-18 Score=173.84 Aligned_cols=296 Identities=22% Similarity=0.313 Sum_probs=179.7
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcC-CCCceEEEEECCCC
Q 010672 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGA-SSKIKSTCIYGGVP 211 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~-~~~~~~~~~~gg~~ 211 (504)
..+.-+|+|+.||||||+. +|-+-+-.............+=|--|.|--|..+.+... +++. ...+....-+.++-
T Consensus 269 n~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti 346 (1172)
T KOG0926|consen 269 NENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTI 346 (1172)
T ss_pred hcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecccc
Confidence 3344599999999999985 343322111111111223467788888866655554433 2322 12233333444432
Q ss_pred ChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc-cccCCcHHHHHHHHHh-------cC------CC
Q 010672 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEPQIKKILSQ-------IR------PD 277 (504)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~-~~~~~~~~~~~~il~~-------~~------~~ 277 (504)
.....|.++|.+.|+.-+++ .+.|+.++.||+||||. -.. ...+.-+++. .. ..
T Consensus 347 --------~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvn---TDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 347 --------GEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVN---TDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred --------CCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccch---HHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 23457999999999998877 45588999999999994 111 1111112211 11 24
Q ss_pred CceEEecCCCcHHHHHHHHH--hhcC-CeEEEEcCCCcccccceeeeeeecChhHHHH----HHHHHHHhhcCCCeEEEE
Q 010672 278 RQTLYWSATWPKEVEHLARQ--YLYN-PYKVIIGSPDLKANHAIRQHVDIVSESQKYN----KLVKLLEDIMDGSRILIF 350 (504)
Q Consensus 278 ~~~i~~SAT~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~l~~~~~~~~~lIf 350 (504)
.+.|+||||+- +.++... ++.. |-.+.+.. ....+.-++......+.+. ..+.+-+. .+.+-+|||
T Consensus 415 LKLIIMSATLR--VsDFtenk~LFpi~pPlikVdA----RQfPVsIHF~krT~~DYi~eAfrKtc~IH~k-LP~G~ILVF 487 (1172)
T KOG0926|consen 415 LKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDA----RQFPVSIHFNKRTPDDYIAEAFRKTCKIHKK-LPPGGILVF 487 (1172)
T ss_pred eeEEEEeeeEE--ecccccCceecCCCCceeeeec----ccCceEEEeccCCCchHHHHHHHHHHHHhhc-CCCCcEEEE
Confidence 57899999974 3333311 1111 21222221 1122233333333333332 23333333 455679999
Q ss_pred eCCcccHHHHHHHHhhCC---C----------------------------------------------------------
Q 010672 351 MDTKKGCDQITRQLRMDG---W---------------------------------------------------------- 369 (504)
Q Consensus 351 ~~s~~~~~~l~~~L~~~~---~---------------------------------------------------------- 369 (504)
+....+++.|++.|++.- +
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999997630 0
Q ss_pred --------------------------------------CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 010672 370 --------------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (504)
Q Consensus 370 --------------------------------------~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~ 411 (504)
-|..+++-++.+.+..+++.-..|..-++|||+++++.+.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 011335556667777777777778888999999999999999
Q ss_pred CCCEEEEcCCCC------------------CHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 412 DVKYVINYDFPG------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 412 ~v~~VI~~~~p~------------------s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
++.+||..+... |..+--||+|||||. ..|+||-+++..
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt-gpGHcYRLYSSA 704 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT-GPGHCYRLYSSA 704 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC-CCCceeehhhhH
Confidence 999999655321 555667999999999 579999998754
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.80 E-value=1.8e-16 Score=164.30 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=85.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC----CCcEEEEccccccCCCC--------
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG----KSPIMTATDVAARGLDV-------- 410 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g----~~~vLVaT~~~~~Gvdi-------- 410 (504)
.+++++|.+.|.+.++.+++.|+..---...+.|+.+ .+...+++|+.. .-.||++|+.+++|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4568999999999999999999764223345556443 456688888874 78899999999999999
Q ss_pred C--CCCEEEEcCCCC-------------------------CHhHHHHHhcccccCCCc---ceEEEEeccccHHHHHHHH
Q 010672 411 K--DVKYVINYDFPG-------------------------SLEDYVHRIGRTGRAGAK---GTAYTFFTAANARFAKELI 460 (504)
Q Consensus 411 ~--~v~~VI~~~~p~-------------------------s~~~~~QriGR~gR~g~~---g~~~~~~~~~~~~~~~~l~ 460 (504)
| .++.||+..+|. -...+.|-+||.-|...+ |..+++-..-.+.+.+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 3 388899877763 133567999999998665 4444443343556666555
Q ss_pred HHHH
Q 010672 461 TILE 464 (504)
Q Consensus 461 ~~l~ 464 (504)
+..+
T Consensus 627 ~~~~ 630 (636)
T TIGR03117 627 ESVK 630 (636)
T ss_pred HHHH
Confidence 5544
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=9.7e-19 Score=148.39 Aligned_cols=119 Identities=45% Similarity=0.756 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010672 329 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (504)
Q Consensus 329 ~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~G 407 (504)
.|...+.+.+.... .++++||||++...++.+++.|.+.+..+..+|++++..+|..+++.|+++...||++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67888888887764 45699999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEE
Q 010672 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447 (504)
Q Consensus 408 vdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~ 447 (504)
+|+|.+++||++++|++..++.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=8.9e-17 Score=177.19 Aligned_cols=136 Identities=13% Similarity=0.195 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010672 330 KYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (504)
Q Consensus 330 k~~~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~--~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (504)
....+.+.|..+. ..+++|||++|.+..+.+++.|..... ....+.-+++...|..+++.|++++-.||++|..++
T Consensus 736 ~~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFw 815 (928)
T PRK08074 736 YIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCccc
Confidence 3445555554432 346899999999999999999975422 122222234334678899999998888999999999
Q ss_pred cCCCCCC--CCEEEEcCCCC------------------------------CHhHHHHHhcccccCCCcceEEEEeccc--
Q 010672 406 RGLDVKD--VKYVINYDFPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA-- 451 (504)
Q Consensus 406 ~Gvdi~~--v~~VI~~~~p~------------------------------s~~~~~QriGR~gR~g~~g~~~~~~~~~-- 451 (504)
+|||+|+ +.+||...+|. -...+.|.+||.-|...+.-++++++..
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~ 895 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLT 895 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccc
Confidence 9999997 57888777654 1334579999999987765556666654
Q ss_pred cHHHHHHHHHHHHH
Q 010672 452 NARFAKELITILEE 465 (504)
Q Consensus 452 ~~~~~~~l~~~l~~ 465 (504)
.+.|-+.+++.|-.
T Consensus 896 ~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 896 TTSYGKYFLESLPT 909 (928)
T ss_pred cchHHHHHHHhCCC
Confidence 66777777777643
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=5.4e-18 Score=162.68 Aligned_cols=326 Identities=19% Similarity=0.259 Sum_probs=203.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
+..|...++++...+-+++..-...+..+.+.+..+.+++-+++++.||||||...--.++...... ..-|..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 6678888999999888887655555666777777778888899999999999976322333333322 133788
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
.-|.|.-|.++......- .++....-.|..-. ..+.. ...-+-.||.+.|+....+.. .+.++++||+||||
T Consensus 97 TQprrvaamsva~RVadE---MDv~lG~EVGysIr---fEdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeah 169 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIR---FEDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAH 169 (699)
T ss_pred cCchHHHHHHHHHHHHHH---hccccchhcccccc---ccccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechhh
Confidence 889988887776655432 11221111111100 00000 001123567777666555433 47889999999999
Q ss_pred c-cccCCcHH-HHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 257 R-MLDMGFEP-QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 257 ~-~~~~~~~~-~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
. -+..+... .++.++ .-+++.++|.+|||+.. ..+. .|+.++-.+.+.. ...++..+--..+.+.++..
T Consensus 170 ERtlATDiLmGllk~v~-~~rpdLk~vvmSatl~a--~Kfq-~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDylEaa 240 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVV-RNRPDLKLVVMSATLDA--EKFQ-RYFGNAPLLAVPG-----THPVEIFYTPEPERDYLEAA 240 (699)
T ss_pred hhhHHHHHHHHHHHHHH-hhCCCceEEEeecccch--HHHH-HHhCCCCeeecCC-----CCceEEEecCCCChhHHHHH
Confidence 4 22211111 222222 23589999999999743 3344 4444444333322 11223233223334444444
Q ss_pred HHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhC---------CCCeEEecCCCCHHHHHHHHHHHh---cC--CCcE
Q 010672 335 VKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFK---AG--KSPI 397 (504)
Q Consensus 335 ~~~l~~~---~~~~~~lIf~~s~~~~~~l~~~L~~~---------~~~~~~ih~~~~~~~r~~~~~~f~---~g--~~~v 397 (504)
+..+-++ ...+-+|||....++.+..++.+... .+.+..+| +.++..+++-.. +| ..+|
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceE
Confidence 4433322 23457999999999998888888642 24567777 334444433222 23 4579
Q ss_pred EEEccccccCCCCCCCCEEEEcCC------------------CCCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 398 MTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 398 LVaT~~~~~Gvdi~~v~~VI~~~~------------------p~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
+|+|++++..+.|+.+.+||.-++ |-|..+-.||.||+||. ..|.|+.++++.
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999999996553 55788999999999998 899999999864
No 138
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=163.05 Aligned_cols=327 Identities=14% Similarity=0.089 Sum_probs=226.2
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 114 ISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 114 l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
++++.-.....+|.+++..+-+|++.++.-.|.+||.+++.+.....+...+ ....+++.|+.+++....+.+.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceE
Confidence 3344445678899999999999999999999999999999887776655432 4458999999999876543322
Q ss_pred Hhc---CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc----ccccccEEEEcCccccccCC---c
Q 010672 194 KFG---ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT----NLRRVTYLVLDEADRMLDMG---F 263 (504)
Q Consensus 194 ~~~---~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~----~l~~~~~lV~DEah~~~~~~---~ 263 (504)
-.. +...-.++..+.+.+......-.+.+.+++++.|.........+.. .+-...++++||+|..+-.. .
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 111 1111223444555555555555677889999999887654432222 23345789999999765431 1
Q ss_pred HHHHHHHHHhc-----CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeec---------ChhH
Q 010672 264 EPQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---------SESQ 329 (504)
Q Consensus 264 ~~~~~~il~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 329 (504)
..+++.++..+ ..+.|++-.|||+...++-....+..+...+......... -...+... ..+.
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~---~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS---EKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc---cceEEEeCCCCCCcchhhhhh
Confidence 23444444443 3578999999999887776666565555544432221111 11222211 1233
Q ss_pred HHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhC----C----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 010672 330 KYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD----G----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400 (504)
Q Consensus 330 k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~----~----~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVa 400 (504)
++.....++.+. ..+-++|-||.+++-|+.+....++. + -.+..+.|+-+.++|.++..++-.|+..-+||
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 444444444443 34559999999999998876655432 1 12456789999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEec
Q 010672 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 401 T~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
|++++-||||..++.|++.++|.|+..+.|..|||||..++..++.+..
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999999999999999988876665543
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.78 E-value=4.3e-17 Score=170.65 Aligned_cols=273 Identities=19% Similarity=0.186 Sum_probs=177.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|++.|.-+. +.-.+..|+.+.||.|||+++.+|++-..+. +..|-||+++..||.+-.+++..+...++
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4666776654 3335678999999999999999998755544 56699999999999999999999999999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHH-HHHHcc------CcccccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH------NTNLRRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~------~~~l~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.+.++.++.+...... .-.|+|+.+|...|- ++|... ......+.+.|+||+|.++ |..
T Consensus 146 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999888766544333 345799999986542 333221 1234668899999999755 100
Q ss_pred -----cHHHHHHHHHhcCCC------------------------------------------------------------
Q 010672 263 -----FEPQIKKILSQIRPD------------------------------------------------------------ 277 (504)
Q Consensus 263 -----~~~~~~~il~~~~~~------------------------------------------------------------ 277 (504)
.......++..+..+
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000111111111100
Q ss_pred --------------------------------------------------------CceEEecCCCcHHHHHHHHHhhcC
Q 010672 278 --------------------------------------------------------RQTLYWSATWPKEVEHLARQYLYN 301 (504)
Q Consensus 278 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 301 (504)
..+.+||+|...+..++...|..+
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 134566666655444444444333
Q ss_pred CeEEEEcCCCcccccce-eeeeeecChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 302 PYKVIIGSPDLKANHAI-RQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 302 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
-+.+ ... .+.... .......+..+|...+++.+.+ +..+.||||-|.|....+.+++.|.+.+++..++++.-.
T Consensus 384 vv~I--Ptn--kp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~ 459 (870)
T CHL00122 384 VVCI--PTH--RPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPE 459 (870)
T ss_pred EEEC--CCC--CCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCc
Confidence 2221 111 111111 1223345666777777766544 456679999999999999999999999999999998632
Q ss_pred H-HHHHHHHHHHhcC-CCcEEEEccccccCCCCC
Q 010672 380 Q-AERDWVLSEFKAG-KSPIMTATDVAARGLDVK 411 (504)
Q Consensus 380 ~-~~r~~~~~~f~~g-~~~vLVaT~~~~~Gvdi~ 411 (504)
. +.-.+++.. .| .-.|-|||++++||.||.
T Consensus 460 ~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 460 NVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred cchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2 222233332 44 345999999999999974
No 140
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.76 E-value=5.4e-17 Score=169.09 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEccc
Q 010672 327 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK--SPIMTATDV 403 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~--~~vLVaT~~ 403 (504)
+..|++.|.-+|+++. .++++|||++..+..+.|..+|..+|+-.+-+.|..+.++|+..+++|+.+. ..+|++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 3567777777777765 4569999999999999999999999999999999999999999999999763 367889999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEecccc
Q 010672 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAAN 452 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~ 452 (504)
.+.|||+.+++.||+||..||+.--.|.--|+.|.|+...+.++-.-.+
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 9999999999999999999999988888888888888765555444333
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=2.3e-18 Score=131.76 Aligned_cols=78 Identities=44% Similarity=0.705 Sum_probs=75.5
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCC
Q 010672 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439 (504)
Q Consensus 362 ~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g 439 (504)
++|+..++.+..+||+++..+|..+++.|++++..|||||+++++|+|+|.+++||++++|+|+.+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=2.1e-17 Score=161.25 Aligned_cols=265 Identities=18% Similarity=0.215 Sum_probs=178.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (504)
++-++||.||||.- +|+++.. ....++.-|.|-||.++++.+.+.+.. +..++|........ +
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~gip----CdL~TGeE~~~~~~-~ 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALGIP----CDLLTGEERRFVLD-N 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcCCC----ccccccceeeecCC-C
Confidence 66679999999986 5666554 445899999999999999999887644 44444432211110 0
Q ss_pred HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHH-HHHhcCCCCceEEecCCCcHHHHHHHHH
Q 010672 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK-ILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (504)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~-il~~~~~~~~~i~~SAT~~~~~~~~~~~ 297 (504)
...+..+-||.++. .. -..+++.|+||++.|.|...+-.+.+ ++........+.+= +.+.++.+.
T Consensus 257 -~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHHHH
Confidence 12356777776554 11 23578999999999998765544443 33333333333221 234445554
Q ss_pred hhcC---CeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEE
Q 010672 298 YLYN---PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALS 373 (504)
Q Consensus 298 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ 373 (504)
.+.. .+.+. .+.....-.-.+.++.-+..+.++..++.| +++....+...+.+.+.. +.+
T Consensus 323 i~k~TGd~vev~--------------~YeRl~pL~v~~~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 323 ILKMTGDDVEVR--------------EYERLSPLVVEETALGSLSNLKPGDCVVAF--SKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHhhcCCeeEEE--------------eecccCcceehhhhhhhhccCCCCCeEEEe--ehhhHHHHHHHHHHhcCcceEE
Confidence 4432 11111 111111111122445556666666655444 889999999999888665 999
Q ss_pred ecCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEcCCC---------CCHhHHHHHhcccccCCC--
Q 010672 374 IHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDFP---------GSLEDYVHRIGRTGRAGA-- 440 (504)
Q Consensus 374 ih~~~~~~~r~~~~~~f~~--g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p---------~s~~~~~QriGR~gR~g~-- 440 (504)
|+|+++++.|..--..|++ ++++||||||+++.|+|+ +++.||++++- .+..+..|.+|||||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999997 899999999999999999 89999998864 367899999999999864
Q ss_pred -cceEEEEeccc
Q 010672 441 -KGTAYTFFTAA 451 (504)
Q Consensus 441 -~g~~~~~~~~~ 451 (504)
.|.+.++..++
T Consensus 466 ~~G~vTtl~~eD 477 (700)
T KOG0953|consen 466 PQGEVTTLHSED 477 (700)
T ss_pred cCceEEEeeHhh
Confidence 36766665543
No 143
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=1.2e-16 Score=168.32 Aligned_cols=312 Identities=18% Similarity=0.238 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHhcCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCC
Q 010672 121 EPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGAS 198 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~~ 198 (504)
..+|+|.++++.+.+.+ ++++.+|+|||||.++.++++. +...-++++++|..+.+..++..+. +|.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 34899999999988654 5999999999999999887774 2235679999999999977766655 68877
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHH------HHHHHHH
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP------QIKKILS 272 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~------~~~~il~ 272 (504)
.+..++.+.|..+.+.. +....+|+|+||+++ +.+. +.+.+++.|.||+|.+.+.. ++ .++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH---HhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHH
Confidence 88888888887665432 233468999999999 4443 57789999999999987432 22 2566667
Q ss_pred hcCCCCceEEecCCCcHHHHHHHHHhhcCCe-EEEEcCCCccccccee---eeeeecChhHHHHHH----HHHHHh-hcC
Q 010672 273 QIRPDRQTLYWSATWPKEVEHLARQYLYNPY-KVIIGSPDLKANHAIR---QHVDIVSESQKYNKL----VKLLED-IMD 343 (504)
Q Consensus 273 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~l----~~~l~~-~~~ 343 (504)
++.++.+++.+|..+.+ ..++ ....+. .+.+... .....+. |.+...........+ ...+.. ...
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~---ig~s~~~v~Nf~p~--~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~ 1358 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDL---IGASSSGVFNFSPS--VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGN 1358 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhh---ccccccceeecCcc--cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcC
Confidence 77788899999988765 3334 111121 1222222 2222222 223222222222211 122222 335
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----------------------CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 010672 344 GSRILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~----------------------~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT 401 (504)
.++.+||+++++.|..++..|-. ..++..+-|.+++..+...+-..|..|.++|+|..
T Consensus 1359 ~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s 1438 (1674)
T KOG0951|consen 1359 RKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMS 1438 (1674)
T ss_pred CCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEE
Confidence 67899999999999777655421 11222233889999999999999999999999988
Q ss_pred cccccCCCCCCCCEEE----EcC------CCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHH
Q 010672 402 DVAARGLDVKDVKYVI----NYD------FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (504)
Q Consensus 402 ~~~~~Gvdi~~v~~VI----~~~------~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 460 (504)
.- -.|+-....-+|+ .|| .+-++.+..||.|+|.|+ |.|+++.....+.+++++.
T Consensus 1439 ~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1439 RD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred cc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHhc
Confidence 65 6777764433333 233 233589999999999994 6899999988888877654
No 144
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.74 E-value=2.2e-16 Score=151.87 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHhhcC---CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEcc
Q 010672 328 SQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIM-TATD 402 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~~---~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~vL-VaT~ 402 (504)
..|++.|.+.|....+ ..+.|||.+.-...+.+.-.|.+.|+.++.+.|+|++..|+.+++.|++. ++.|+ |+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 3466666665544332 23899999999999999999999999999999999999999999999976 66654 5558
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcc--eEEEEeccccHHHHHHHHHHHHHhCC
Q 010672 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEEAGQ 468 (504)
Q Consensus 403 ~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (504)
+.+.-+|+..+.+|+..|+.|++.--.|.-.|..|.|+.. .++.|+-++ .+-.+++++.+++.+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQeKKa~ 764 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQEKKAN 764 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHHHHHhh
Confidence 8888899999999999999999999999999999999764 555555544 334455665555443
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=1.1e-16 Score=137.29 Aligned_cols=144 Identities=44% Similarity=0.571 Sum_probs=111.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
+++++.++||+|||.+++..+...... ....+++|++|++.++.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999987766665543 12567999999999999999999987765 66777777766655555
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
.......+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567789999999999887776655566789999999999987765444323344456778899999995
No 146
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.73 E-value=7.6e-17 Score=160.85 Aligned_cols=126 Identities=23% Similarity=0.364 Sum_probs=109.9
Q ss_pred ChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEccc
Q 010672 326 SESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDV 403 (504)
Q Consensus 326 ~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~-vLVaT~~ 403 (504)
.+..|+..|..+|..+. .++++|+|++--+..+.+.++|...++...-+.|.....+|..++.+|...++- +|++|.+
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 35667777777777664 456999999999999999999999999999999999999999999999987654 5789999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcce--EEEEeccc
Q 010672 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGT--AYTFFTAA 451 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~--~~~~~~~~ 451 (504)
.+-|||+..++.||+||..|+|.--.|...||.|-|++.. +|-+++..
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999999998865 44455444
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.2e-15 Score=159.62 Aligned_cols=274 Identities=18% Similarity=0.204 Sum_probs=176.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|.-+- +.-.+.-|+.+.||-|||+++.+|++-..+. +..|-||+++..||..=.+++..+...++
T Consensus 85 r~ydVQliGg--l~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGG--MVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhh--hhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4555555444 4335678999999999999999998876665 66699999999999999999999988999
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-----HHHHHc--cCcccccccEEEEcCccccc-cCC----------
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLES--HNTNLRRVTYLVLDEADRML-DMG---------- 262 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-----~~~l~~--~~~~l~~~~~lV~DEah~~~-~~~---------- 262 (504)
+.|.++.++.... .+...-.|||+.+|+..| .+.+.. .......+.+.|+||+|.++ |..
T Consensus 155 Ltvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 9999988766543 333455789999999876 444332 12345678999999999765 111
Q ss_pred -----cHHHHHHHHHhcCC--------------CC---------------------------------------------
Q 010672 263 -----FEPQIKKILSQIRP--------------DR--------------------------------------------- 278 (504)
Q Consensus 263 -----~~~~~~~il~~~~~--------------~~--------------------------------------------- 278 (504)
.......+...+.+ ..
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 00011111111111 11
Q ss_pred ---------------------------------------------------------------ceEEecCCCcHHHHHHH
Q 010672 279 ---------------------------------------------------------------QTLYWSATWPKEVEHLA 295 (504)
Q Consensus 279 ---------------------------------------------------------------~~i~~SAT~~~~~~~~~ 295 (504)
++.+||+|...+..++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 22344444433333333
Q ss_pred HHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEe
Q 010672 296 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (504)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~i 374 (504)
.-|..+-+.+-... ...........+.+...|...+++.+.+. ..+.||||-|.|.+..+.+++.|.+.|++..++
T Consensus 393 ~iY~l~Vv~IPTnk---P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLEVTVIPTNR---PRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCcEEEcCCCC---CeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 33322211111000 00001112233445678888888766654 456799999999999999999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHhcCC-CcEEEEccccccCCCCC
Q 010672 375 HGDK-SQAERDWVLSEFKAGK-SPIMTATDVAARGLDVK 411 (504)
Q Consensus 375 h~~~-~~~~r~~~~~~f~~g~-~~vLVaT~~~~~Gvdi~ 411 (504)
++.- ..+.-.+++.. .|+ -.|-|||++++||.||.
T Consensus 470 NAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9963 32222233332 453 35999999999999985
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=5.3e-17 Score=168.09 Aligned_cols=317 Identities=21% Similarity=0.318 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
++.+||...+.++.+ +-+-|+..+||.|||.. .+.++.++.+.. ...+| .||+||+..|.+ |..++.++.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 789999999998753 34688999999999976 555666666542 12244 799999988876 788888876
Q ss_pred CCCCceEEEEECCCCC-hHh--HHHHhcCCcEEEeChHHHHHHHHccCcccc--cccEEEEcCccccccCCcHHHHHHHH
Q 010672 197 ASSKIKSTCIYGGVPK-GPQ--VRDLQKGVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADRMLDMGFEPQIKKIL 271 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~-~~~--~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~--~~~~lV~DEah~~~~~~~~~~~~~il 271 (504)
+. +... .|.|... +.. ........+|+++|++.++. ....|+ ++.++||||.|+|.+.. ..+...+
T Consensus 468 PS--v~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L 538 (1157)
T KOG0386|consen 468 PS--VQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTL 538 (1157)
T ss_pred cc--eeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccchh--hHHHHHh
Confidence 55 3333 3333322 111 12223568999999988764 222222 45789999999987542 2222222
Q ss_pred HhcCCCCceEEecCCC----------------------------------------------------------------
Q 010672 272 SQIRPDRQTLYWSATW---------------------------------------------------------------- 287 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT~---------------------------------------------------------------- 287 (504)
..--.....+++|+|+
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 2111222334444441
Q ss_pred -----------cHHHHHHHHH------------------------------------------hhcCCeEEEEcCCCccc
Q 010672 288 -----------PKEVEHLARQ------------------------------------------YLYNPYKVIIGSPDLKA 314 (504)
Q Consensus 288 -----------~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~ 314 (504)
|..++.+.+. .+..|+.+. .+
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~------~v 692 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFA------NV 692 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhh------hh
Confidence 1111111100 000000000 00
Q ss_pred ccceeee---eeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHH
Q 010672 315 NHAIRQH---VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 390 (504)
Q Consensus 315 ~~~~~~~---~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f 390 (504)
....... ..++....|...|..+|-++. .++++|.||....-.+.+..+|.-.++....+.|....++|...++.|
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 0000000 011222345555555554443 367999999999999999999999999999999999999999999999
Q ss_pred hcCCC---cEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHH
Q 010672 391 KAGKS---PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKE 458 (504)
Q Consensus 391 ~~g~~---~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~ 458 (504)
+.-.. .+|.+|.....|+|+..++.||.||..|++....|+--||.|.|+...+-++....-..+-..
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~ 843 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEK 843 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHH
Confidence 96543 478899999999999999999999999999999999999999999987777776654444333
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=2e-16 Score=142.52 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=102.5
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
+|+++|.+++..+.. .+++++.+|||||||.+++..+... .. +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 689999999998873 5789999999999999977534433 32 59999999999999999997
Q ss_pred HhcCCCCceEEE-----------EECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-----------CcccccccEEE
Q 010672 194 KFGASSKIKSTC-----------IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----------NTNLRRVTYLV 251 (504)
Q Consensus 194 ~~~~~~~~~~~~-----------~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-----------~~~l~~~~~lV 251 (504)
.+.......... ..................+++++|.+.|....... .......++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765432211111 01111111222233456789999999998765431 12345678999
Q ss_pred EcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc
Q 010672 252 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (504)
Q Consensus 252 ~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~ 288 (504)
+||||++.... .+..++. .+...+|+||||++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999976432 1455555 56777999999975
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.70 E-value=3.2e-14 Score=152.34 Aligned_cols=130 Identities=21% Similarity=0.371 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEccc
Q 010672 330 KYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDV 403 (504)
Q Consensus 330 k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~~~~r~~~~~~f~----~g~~~vLVaT~~ 403 (504)
....+.+.+..+. ..+.+|||++|.+..+.++..|... +. ...+++.. .+..+++.|+ .++..||++|..
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~s 594 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecc
Confidence 3444444443322 2346899999999999999998743 33 34445542 4677887776 467789999999
Q ss_pred cccCCCCCC--CCEEEEcCCCC----C--------------------------HhHHHHHhcccccCCCcceEEEEeccc
Q 010672 404 AARGLDVKD--VKYVINYDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 404 ~~~Gvdi~~--v~~VI~~~~p~----s--------------------------~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
+++|||+|+ +++||...+|. + ...+.|.+||.-|...+--++++++..
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred ccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 999999996 78898877664 1 224568899999986664455555554
Q ss_pred --cHHHHHHHHHHH
Q 010672 452 --NARFAKELITIL 463 (504)
Q Consensus 452 --~~~~~~~l~~~l 463 (504)
...|-+.+++.|
T Consensus 675 ~~~~~Yg~~~l~sL 688 (697)
T PRK11747 675 LLTKRYGKRLLDAL 688 (697)
T ss_pred ccchhHHHHHHHhC
Confidence 566777776665
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=1.9e-15 Score=151.32 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHh--cCCCcEEE-Ec
Q 010672 327 ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK--AGKSPIMT-AT 401 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~--~g~~~vLV-aT 401 (504)
..-|+..+++.+++.. ...+++|..+-......+...|.+.|+....+||.....+|..+++.|+ +|..+|++ .-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 3457777777777652 3347777777777778888889999999999999999999999999998 45456665 44
Q ss_pred cccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEE--Eeccc
Q 010672 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFTAA 451 (504)
Q Consensus 402 ~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~--~~~~~ 451 (504)
...+.|+|+-+.+|+|.+|+-||+.--.|...|.-|+|++..+++ |+...
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 788899999999999999999999999999999999999876655 44443
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.65 E-value=2.3e-14 Score=152.23 Aligned_cols=311 Identities=21% Similarity=0.240 Sum_probs=177.1
Q ss_pred CCcHHHHHHHHHHhc----C--Cc--EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALK----G--RD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~----~--~~--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 192 (504)
.-+.||-+|++.+.. . +. ++-.|.||||||++=. -++..+.. ...+.+..|..-.|.|-.|.-+.+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd-----~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD-----DKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC-----CCCCceEEEEccccceeccchHHH
Confidence 446799999998764 1 22 5556999999998732 23333332 234677888888888888877777
Q ss_pred HHhcCCCCceEEEEECCCCChHhH-------------------------------------------HHHhc--------
Q 010672 193 TKFGASSKIKSTCIYGGVPKGPQV-------------------------------------------RDLQK-------- 221 (504)
Q Consensus 193 ~~~~~~~~~~~~~~~gg~~~~~~~-------------------------------------------~~~~~-------- 221 (504)
++-..-..-...++.|+....+.. ..+..
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 664333333334444432211100 00000
Q ss_pred CCcEEEeChHHHHHHHHccC--cc-cc--c--ccEEEEcCccccccCCcHHHHHHHHHhc-CCCCceEEecCCCcHHHHH
Q 010672 222 GVEIVIATPGRLIDMLESHN--TN-LR--R--VTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 222 ~~~Iiv~T~~~l~~~l~~~~--~~-l~--~--~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~ 293 (504)
..+|+|||++.++....... .. +. . -+.|||||+|..-... ...+..++... .-...+++||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 14799999999887663211 11 11 1 2679999999754433 23344444422 2457799999999987654
Q ss_pred H-HHHh----------hcC---CeEEE---EcCCCcc----------------------------cccceeeeeeecC--
Q 010672 294 L-ARQY----------LYN---PYKVI---IGSPDLK----------------------------ANHAIRQHVDIVS-- 326 (504)
Q Consensus 294 ~-~~~~----------~~~---~~~~~---~~~~~~~----------------------------~~~~~~~~~~~~~-- 326 (504)
. ...| ... +..+. +...... ........+.+..
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 3 2222 111 11111 1100000 0000000011111
Q ss_pred --hhHHHHHHHHHHHh--------hc-----CCCe---EEEEeCCcccHHHHHHHHhhC----C--CCeEEecCCCCHHH
Q 010672 327 --ESQKYNKLVKLLED--------IM-----DGSR---ILIFMDTKKGCDQITRQLRMD----G--WPALSIHGDKSQAE 382 (504)
Q Consensus 327 --~~~k~~~l~~~l~~--------~~-----~~~~---~lIf~~s~~~~~~l~~~L~~~----~--~~~~~ih~~~~~~~ 382 (504)
.......+.+.+.+ +. .+++ .||-+++++.+-.++..|... + +.+.++|+......
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 11122223222211 11 1122 478888889888888888643 2 34677899988777
Q ss_pred HHHHHHHH----------------------hc----CCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccc
Q 010672 383 RDWVLSEF----------------------KA----GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 436 (504)
Q Consensus 383 r~~~~~~f----------------------~~----g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~g 436 (504)
|..+++.. ++ +...|+|+|.+++.|+|+ +.+++|-- |.++...+|++||+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVN 877 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccc
Confidence 77766543 12 366799999999999998 56666543 445899999999999
Q ss_pred cCCCc
Q 010672 437 RAGAK 441 (504)
Q Consensus 437 R~g~~ 441 (504)
|.+..
T Consensus 878 R~~~~ 882 (1110)
T TIGR02562 878 RHRLE 882 (1110)
T ss_pred ccccC
Confidence 98653
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.65 E-value=7.1e-14 Score=150.69 Aligned_cols=118 Identities=17% Similarity=0.296 Sum_probs=85.4
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEccccccCCCCCC--CCEEEEcC
Q 010672 345 SRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLDVKD--VKYVINYD 420 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~~~~r~~~~~~f~~g~~-~vLVaT~~~~~Gvdi~~--v~~VI~~~ 420 (504)
+++|||++|.+.+..+++.++..... ....++..+ +...++.|+++.- .++|+|..+++|||+|+ +..||...
T Consensus 480 ~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 480 GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEe
Confidence 47999999999999999999876542 344455444 4478888887655 89999999999999996 57788777
Q ss_pred CCC------------------------------CHhHHHHHhcccccCCCcceEEEEeccc--cHHHHHHHHHHHHH
Q 010672 421 FPG------------------------------SLEDYVHRIGRTGRAGAKGTAYTFFTAA--NARFAKELITILEE 465 (504)
Q Consensus 421 ~p~------------------------------s~~~~~QriGR~gR~g~~g~~~~~~~~~--~~~~~~~l~~~l~~ 465 (504)
.|. -+..+.|.+||+-|.-.+.-++++++.. ...+-+.+.+.+..
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~ 633 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPP 633 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCC
Confidence 664 3557789999999976665555555543 23355555554443
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.9e-13 Score=147.62 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHhhCCC-------CeEEecCCCCHHHHHHHHHHHhc----CCCc
Q 010672 330 KYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKSQAERDWVLSEFKA----GKSP 396 (504)
Q Consensus 330 k~~~l~~~l~~~~~--~~~~lIf~~s~~~~~~l~~~L~~~~~-------~~~~ih~~~~~~~r~~~~~~f~~----g~~~ 396 (504)
-...+.+.|..... .+.+|||++|....+.+.+.+...+. ....+ -.....++..+++.|++ ++-.
T Consensus 506 ~~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~~~~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 506 LVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ETKDAQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eCCCcchHHHHHHHHHHHHhcCCce
Confidence 34455555544332 35799999999999999998875432 12222 22223578889999964 4556
Q ss_pred EEEEc--cccccCCCCCC--CCEEEEcCCCC-CH------------------------------hHHHHHhcccccCCCc
Q 010672 397 IMTAT--DVAARGLDVKD--VKYVINYDFPG-SL------------------------------EDYVHRIGRTGRAGAK 441 (504)
Q Consensus 397 vLVaT--~~~~~Gvdi~~--v~~VI~~~~p~-s~------------------------------~~~~QriGR~gR~g~~ 441 (504)
||+|+ ..+++|||+++ ++.||.+++|. ++ ....|.+||+-|...+
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 88999999997 68899888775 11 2345999999998776
Q ss_pred ceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcCC
Q 010672 442 GTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGA 481 (504)
Q Consensus 442 g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~ 481 (504)
--++++++.. +.. .+....+|.|+.......
T Consensus 665 ~G~iillD~R---~~~------~~~~~~lp~W~~~~~~~~ 695 (705)
T TIGR00604 665 YGSIVLLDKR---YAR------SNKRKKLPKWIQDTIQSS 695 (705)
T ss_pred eEEEEEEehh---cCC------cchhhhcCHHHHhhcccc
Confidence 5566666543 211 112345688887766543
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.4e-15 Score=117.35 Aligned_cols=81 Identities=46% Similarity=0.735 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC
Q 010672 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (504)
Q Consensus 359 ~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~ 438 (504)
.+++.|+..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 010672 439 G 439 (504)
Q Consensus 439 g 439 (504)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.62 E-value=6.2e-13 Score=131.51 Aligned_cols=289 Identities=19% Similarity=0.274 Sum_probs=204.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCC-CceE----EEEEC--------------CCCChHhHHHHhc-----------
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASS-KIKS----TCIYG--------------GVPKGPQVRDLQK----------- 221 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~----~~~~g--------------g~~~~~~~~~~~~----------- 221 (504)
.|+||||+|+|..|.++.+.+.++.... .+.. ..-+| ..........+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 6999999999999999998887765441 1000 00011 0011111222111
Q ss_pred --------------CCcEEEeChHHHHHHHHc------cCcccccccEEEEcCccccccCCcHHHHHHHHHhcC---C--
Q 010672 222 --------------GVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR---P-- 276 (504)
Q Consensus 222 --------------~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~---~-- 276 (504)
.+|||||+|=-|...+.. ....|+.+.++|+|.||.|+-.. ...+..+++.++ .
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCC
Confidence 258999999888777763 23458999999999999877555 345555555542 1
Q ss_pred -------------------CCceEEecCCCcHHHHHHHHHhhcCCeE-EEEcCCC------cccccceeeeeeecC----
Q 010672 277 -------------------DRQTLYWSATWPKEVEHLARQYLYNPYK-VIIGSPD------LKANHAIRQHVDIVS---- 326 (504)
Q Consensus 277 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~---- 326 (504)
-+|+|++|+...+++..+....+.+..- +.+.... ......+.|.+.-.+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 2599999999999999999987776432 1111111 123334555554322
Q ss_pred ---hhHHHHHHHH-HHHhhc---CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010672 327 ---ESQKYNKLVK-LLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (504)
Q Consensus 327 ---~~~k~~~l~~-~l~~~~---~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLV 399 (504)
.+.+.+.+.+ +|..+. ..+.+|||+++.-+--.+.++|++.++....+|...+..+...+-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 2344444444 233333 345899999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc--ccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCC------cceEEEEeccccHHHHHHHHH
Q 010672 400 ATDVA--ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA------KGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 400 aT~~~--~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~------~g~~~~~~~~~~~~~~~~l~~ 461 (504)
.|.-+ -+-..|.+++.||+|.+|..+.-|...+.-...... ...|.++++.-|.--+..++-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99643 467889999999999999999999988866555433 579999999988766665553
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=5.7e-14 Score=148.62 Aligned_cols=128 Identities=21% Similarity=0.316 Sum_probs=103.5
Q ss_pred ecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 324 IVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
+.+...|...+++.+.+. ..+.||||-|.|....+.|++.|...+++..++++.....+-+.+-+.=+. -.|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEecc
Confidence 345677888887776664 456699999999999999999999999999999887555444444443233 34999999
Q ss_pred ccccCCCCC--------CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 403 VAARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 403 ~~~~Gvdi~--------~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+++||.||. +==+||-...+.|..--.|-.||+||-|.+|.+..|++-.|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999997 224788888999999999999999999999999999987653
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.58 E-value=4.7e-13 Score=140.90 Aligned_cols=277 Identities=11% Similarity=0.097 Sum_probs=162.2
Q ss_pred EccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH---H
Q 010672 142 IAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---D 218 (504)
Q Consensus 142 ~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~ 218 (504)
.+.+|||||.+|+-.+-..+.. +..+|||+|...|..|+.+.+++.... ..+..++++.+..+... .
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHH
Confidence 3446999999987744444333 677999999999999999999975532 45777888777654433 3
Q ss_pred H-hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-----cH-HHHHHHHHhcCCCCceEEecCCCcHHH
Q 010672 219 L-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FE-PQIKKILSQIRPDRQTLYWSATWPKEV 291 (504)
Q Consensus 219 ~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-----~~-~~~~~il~~~~~~~~~i~~SAT~~~~~ 291 (504)
+ ...+.|+|+|-.-+ ...+.++.+||+||-|.-.-.. |. ..+. ++.....+..+|+.|||++-+.
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA-~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA-LLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHH-HHHHHHcCCcEEEECCCCCHHH
Confidence 3 33478999996444 3457889999999999533211 11 1222 2233346778999999987555
Q ss_pred HHHHHHhhcCCeEEEEcCCCcccccceeeeeeecCh-h-----H----HHHHHHHHHHhhcCCCeEEEEeCCcccH----
Q 010672 292 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-S-----Q----KYNKLVKLLEDIMDGSRILIFMDTKKGC---- 357 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~----k~~~l~~~l~~~~~~~~~lIf~~s~~~~---- 357 (504)
...+..-.. ..+..............+.+..... . . --..+++.+++..+.+++|||.|.+-.+
T Consensus 308 ~~~~~~g~~--~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~ 385 (665)
T PRK14873 308 QALVESGWA--HDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHHhcCcc--eeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeE
Confidence 443332111 1111111000000001111111000 0 0 1123445555544444999999887543
Q ss_pred -------------------------------------------------------HHHHHHHhhC--CCCeEEecCCCCH
Q 010672 358 -------------------------------------------------------DQITRQLRMD--GWPALSIHGDKSQ 380 (504)
Q Consensus 358 -------------------------------------------------------~~l~~~L~~~--~~~~~~ih~~~~~ 380 (504)
+++++.|.+. +.++..+
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~------ 459 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS------ 459 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE------
Confidence 2222222221 1122221
Q ss_pred HHHHHHHHHHhcCCCcEEEEcc----ccccCCCCCCCCEEEEcCCCC------------CHhHHHHHhcccccCCCcceE
Q 010672 381 AERDWVLSEFKAGKSPIMTATD----VAARGLDVKDVKYVINYDFPG------------SLEDYVHRIGRTGRAGAKGTA 444 (504)
Q Consensus 381 ~~r~~~~~~f~~g~~~vLVaT~----~~~~Gvdi~~v~~VI~~~~p~------------s~~~~~QriGR~gR~g~~g~~ 444 (504)
+++.+++.|. ++.+|||+|. +++ ++++.|+..|... ....+.|..||+||....|.+
T Consensus 460 -d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 460 -GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred -ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 2345788886 5999999998 665 3567766555321 345667899999999889999
Q ss_pred EEEeccc
Q 010672 445 YTFFTAA 451 (504)
Q Consensus 445 ~~~~~~~ 451 (504)
++...++
T Consensus 533 ~iq~~p~ 539 (665)
T PRK14873 533 VVVAESS 539 (665)
T ss_pred EEEeCCC
Confidence 9876444
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.58 E-value=1.7e-13 Score=153.27 Aligned_cols=337 Identities=20% Similarity=0.238 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHh-----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 120 FEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l-----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
..++++|.+.++++. .+.+.++...+|.|||+..+. ++.++.... ....+.++++||+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~-~l~~~~~~~---~~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIA-LLLSLLESI---KVYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHH-HHHhhhhcc---cCCCCCeEEEecH-HHHHHHHHHHhh
Confidence 467999999998855 256788889999999988554 333333221 1114569999998 677789999999
Q ss_pred hcCCCCceEEEEECCCCC----hHhHHHHhcC-----CcEEEeChHHHHHHH-HccCcccccccEEEEcCccccccCCcH
Q 010672 195 FGASSKIKSTCIYGGVPK----GPQVRDLQKG-----VEIVIATPGRLIDML-ESHNTNLRRVTYLVLDEADRMLDMGFE 264 (504)
Q Consensus 195 ~~~~~~~~~~~~~gg~~~----~~~~~~~~~~-----~~Iiv~T~~~l~~~l-~~~~~~l~~~~~lV~DEah~~~~~~~~ 264 (504)
|.+.... +...+|.... ......+... .+++++|++.+...+ ......-..+.++|+||+|++.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8776543 5555655431 3344443332 689999999987732 1122334467899999999976543 1
Q ss_pred HHHHHHHHhcCCCCceEEecCCC-cHHHHHH---HH-Hhhc---------------CCe---------------------
Q 010672 265 PQIKKILSQIRPDRQTLYWSATW-PKEVEHL---AR-QYLY---------------NPY--------------------- 303 (504)
Q Consensus 265 ~~~~~il~~~~~~~~~i~~SAT~-~~~~~~~---~~-~~~~---------------~~~--------------------- 303 (504)
.....+. .++... .+.+|.|+ .+.+.++ .. ..+. .+.
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 1222221 222222 24445553 1111100 00 0000 000
Q ss_pred ------------E--EEEcCC---------Ccc-----------c-----ccceee--------------ee--------
Q 010672 304 ------------K--VIIGSP---------DLK-----------A-----NHAIRQ--------------HV-------- 322 (504)
Q Consensus 304 ------------~--~~~~~~---------~~~-----------~-----~~~~~~--------------~~-------- 322 (504)
. +....+ ... . ...+.+ ..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0 000000 000 0 000000 00
Q ss_pred --------e-----------------------------ecChh-HHHHHHHHHH-Hhh-cCCC--eEEEEeCCcccHHHH
Q 010672 323 --------D-----------------------------IVSES-QKYNKLVKLL-EDI-MDGS--RILIFMDTKKGCDQI 360 (504)
Q Consensus 323 --------~-----------------------------~~~~~-~k~~~l~~~l-~~~-~~~~--~~lIf~~s~~~~~~l 360 (504)
. .+... .|...+.+++ ... ..+. ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0 00011 5677777777 343 3444 899999999999999
Q ss_pred HHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC
Q 010672 361 TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (504)
Q Consensus 361 ~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g--~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~ 438 (504)
...|+..++....++|.++..+|...++.|.++ ..-+++++.+.+.|+|+...++||++|+.|++....|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999988899999999999999999999986 344667778999999999999999999999999999999999999
Q ss_pred CCcceEEEEeccccHHHHHHHHHHHHH
Q 010672 439 GAKGTAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 439 g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
|++..+.++-......+-..+++....
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHHHHH
Confidence 998766655544433333334443333
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.53 E-value=3.3e-13 Score=138.96 Aligned_cols=121 Identities=20% Similarity=0.254 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHhh----------------------CCCCeEEecCCCCHHHHHH
Q 010672 329 QKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDW 385 (504)
Q Consensus 329 ~k~~~l~~~l~~~~~-~~~~lIf~~s~~~~~~l~~~L~~----------------------~~~~~~~ih~~~~~~~r~~ 385 (504)
.|+-.|+++|..... +.++|||.++....+.+..+|.. .|.....|.|.....+|+.
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 355556666655432 55999999999999999999953 2345678899999999999
Q ss_pred HHHHHhcC----CCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEec
Q 010672 386 VLSEFKAG----KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 386 ~~~~f~~g----~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
..+.|++- ..-.||+|.+.+-|||+-+++.||+||..|||.--+|.|=|+.|+|+..-||++-.
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99999864 22379999999999999999999999999999999999999999999988777544
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.53 E-value=1.4e-12 Score=135.55 Aligned_cols=288 Identities=17% Similarity=0.217 Sum_probs=182.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (504)
.++.+|+|||||.+. +..+...... ...++|+|+.+++|+.++...++..... ++. .|...... .+.
T Consensus 52 ~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~i~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-IID- 118 (824)
T ss_pred EEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-ccc-
Confidence 677799999999873 3344443222 2667999999999999999998875421 111 11111110 000
Q ss_pred HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHH-------HHHHhcCCCCceEEecCCCcHHH
Q 010672 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK-------KILSQIRPDRQTLYWSATWPKEV 291 (504)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~-------~il~~~~~~~~~i~~SAT~~~~~ 291 (504)
....+-+++..+.|..+. ...+.++++||+||+-.++..-|.+.++ .+...++....+|++-|++....
T Consensus 119 -~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred -ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 112466777777775542 2246679999999999766543333322 23344567888999999999999
Q ss_pred HHHHHHhhcCC-eEEEEcCCCcccccceeeeeeec-----------------------------------ChhHHHHHHH
Q 010672 292 EHLARQYLYNP-YKVIIGSPDLKANHAIRQHVDIV-----------------------------------SESQKYNKLV 335 (504)
Q Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~k~~~l~ 335 (504)
.++...+..+. +.+++.... .....-.+-+... ...+....+-
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 99988876543 333332211 1000000000000 0011223334
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC-
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK- 414 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~- 414 (504)
.++..+..++++-||++|...++.+++........+..+++.....+ + +.| ++.+|++-|.++..|+++....
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhc
Confidence 45555667788999999999999999999988888888888766552 2 223 4688999999999999997543
Q ss_pred -EEEEcCCC----CCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 415 -YVINYDFP----GSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 415 -~VI~~~~p----~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
-|+-|=-| .++.+..|++||+-.- .....+++++..
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 34433222 2456789999998554 556777777654
No 162
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=6.3e-12 Score=122.68 Aligned_cols=343 Identities=20% Similarity=0.227 Sum_probs=224.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEE-ccCCCch--HHHHHHHHHHHHhcCC--------C-CC--------------CCCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLAYLLPAIVHVNAQP--------F-LA--------------PGDG 172 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~-a~TGsGK--T~~~~l~~l~~l~~~~--------~-~~--------------~~~~ 172 (504)
-..+|+.|.+.+..+.+.+|++.. ...+.|+ +-+|.+.+|+|+.+.. . .. .-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 347899999999999999998755 3334555 5678888998886421 0 00 1125
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCc-e--------EEEEECCCC--------ChHhHHHH----------------
Q 010672 173 PIVLVLAPTRELAVQIQQESTKFGASSKI-K--------STCIYGGVP--------KGPQVRDL---------------- 219 (504)
Q Consensus 173 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~-~--------~~~~~gg~~--------~~~~~~~~---------------- 219 (504)
|+||||||+|+-|..+.+.+..+....+- + ...-|+|.. .....+.+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999988876333221 0 011122100 00011111
Q ss_pred ---------hcCCcEEEeChHHHHHHHHc------cCcccccccEEEEcCccccccCCcHHHHHHHHHhcCC--------
Q 010672 220 ---------QKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-------- 276 (504)
Q Consensus 220 ---------~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~-------- 276 (504)
....||+||+|=-|.-++.+ ....|+.+.++|+|-||.++...| ..+..|+..+..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 12359999999888666652 123478899999999999987764 455566655431
Q ss_pred ----------------CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCc------ccccceeee---eee----cCh
Q 010672 277 ----------------DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL------KANHAIRQH---VDI----VSE 327 (504)
Q Consensus 277 ----------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~----~~~ 327 (504)
-+|+++||+--.+....+...++.+..-......-. ..-..+.|. +.+ ...
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 148889998887778888877776643211111000 000111111 111 112
Q ss_pred hHHHHHHHHHHH-hhcC--CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010672 328 SQKYNKLVKLLE-DIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (504)
Q Consensus 328 ~~k~~~l~~~l~-~~~~--~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (504)
..+...+.+.+- .+.+ ..-+||+.++.-.--.+-.++++..+....||.-.+...-..+-+.|-.|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 334444443322 1111 2258999999999999999999998888888888888888888889999999999999654
Q ss_pred --ccCCCCCCCCEEEEcCCCCCHhHHHHH---hcccccCC----CcceEEEEeccccHHHHHHHHHH
Q 010672 405 --ARGLDVKDVKYVINYDFPGSLEDYVHR---IGRTGRAG----AKGTAYTFFTAANARFAKELITI 462 (504)
Q Consensus 405 --~~Gvdi~~v~~VI~~~~p~s~~~~~Qr---iGR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~ 462 (504)
-+-.+|.+|..||+|.+|.+|.-|.-- .+|+.-.| ..-.|.++++.-|.--+..++-.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 478899999999999999998876654 45544333 22478889998886665555543
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.41 E-value=3.9e-11 Score=132.07 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=162.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
+..+++.-||||||++.+. +...+... ...|.|+||+.++.|-.|+.+++..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4599999999999998544 44444443 3478999999999999999999999875533211 222333334
Q ss_pred HHHhcC-CcEEEeChHHHHHHHHccC--cccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHH
Q 010672 217 RDLQKG-VEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 217 ~~~~~~-~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~ 293 (504)
..+... ..|||||.++|-..+.... ..-.+=-+||+|||||-- ++..-..+...+ ++...++||+|+-..-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 444433 4899999999987775531 112223468999999953 333333333334 457899999997432222
Q ss_pred H-HHHhhcCCeEEEEcCCCcccccceeeeeeec------------------------Ch-------------------hH
Q 010672 294 L-ARQYLYNPYKVIIGSPDLKANHAIRQHVDIV------------------------SE-------------------SQ 329 (504)
Q Consensus 294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~-------------------~~ 329 (504)
. ......+.++..........-..+...+... .. ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 2 1223333333322221111111111000000 00 00
Q ss_pred ----HHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCC-------------------C----eEEecCCCCHH
Q 010672 330 ----KYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGW-------------------P----ALSIHGDKSQA 381 (504)
Q Consensus 330 ----k~~~l~~~l~~-~~~~~~~lIf~~s~~~~~~l~~~L~~~~~-------------------~----~~~ih~~~~~~ 381 (504)
-...+.+.... ...+.++++.|.+++.|..+.+.+..... . ....|.. ...
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHH
Confidence 00111111222 22234788888888855444444322100 0 0000111 222
Q ss_pred HHHHHHHHH--hcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC
Q 010672 382 ERDWVLSEF--KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA 438 (504)
Q Consensus 382 ~r~~~~~~f--~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~ 438 (504)
.+.....+| ++...++||.++++-+|+|-|.++++ .+|-|.--...+|.+.|+.|.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccC
Confidence 333444443 45688999999999999999987755 567777788999999999994
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.38 E-value=5.2e-12 Score=123.04 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=93.2
Q ss_pred HHHHHHHHHh-------------cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010672 125 IQAQGWPMAL-------------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (504)
Q Consensus 125 ~Q~~~i~~~l-------------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 191 (504)
+|.+++.+++ ..+..|++.++|+|||+.++. ++..+..... ......+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 5788887763 235699999999999988655 4444444211 1112359999999 888999999
Q ss_pred HHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc---cCcccccccEEEEcCccccccCCcHHHHH
Q 010672 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (504)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~---~~~~l~~~~~lV~DEah~~~~~~~~~~~~ 268 (504)
+.++.....+++..+.+...............+++|+|++.+...... ..+.-.++++||+||+|.+.+.. ....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cccc
Confidence 999986555666665554411122222234578999999999711000 01111348999999999996554 2333
Q ss_pred HHHHhcCCCCceEEecCCC
Q 010672 269 KILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 269 ~il~~~~~~~~~i~~SAT~ 287 (504)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 4444465 66688899996
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=4.4e-12 Score=104.98 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=81.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
|+-.++-..+|+|||.-.+.-++...... +.++|||.|||.++..+.+.++... +++.. .- ..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~~----~~~~t--~~-~~--- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGLP----VRFHT--NA-RM--- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTSS----EEEES--TT-SS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcCC----cccCc--ee-ee---
Confidence 44467889999999987565566555543 6789999999999999888886532 22211 00 00
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc--CCCCceEEecCCCcHHH
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEV 291 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~--~~~~~~i~~SAT~~~~~ 291 (504)
.....+.-|-++|...+..++.+ ...+.+++++|+||||-.-... -.....+..+ .....+|++|||+|-..
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 11234457889999998888776 5567899999999999643221 1111222222 23457999999998654
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.26 E-value=3.7e-10 Score=118.52 Aligned_cols=316 Identities=20% Similarity=0.234 Sum_probs=197.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
-++|+-.|.+-.+.-+..-++.+.||-|||+++.+|+.-..+. +..|.+|+...-||.--.+++..+...++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 3455556666666666778899999999999999998766554 55699999999999988899999888899
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHH-HHHHc------cCcccccccEEEEcCccccc-c---------C--
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLES------HNTNLRRVTYLVLDEADRML-D---------M-- 261 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~------~~~~l~~~~~lV~DEah~~~-~---------~-- 261 (504)
+.+.+...+.+....... -.|||+.+|...|- +.+.. .......+.+.|+||+|.++ | .
T Consensus 150 lsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 999999988865544443 45799999987652 22211 12234467899999999654 1 1
Q ss_pred ----CcHHHHHHHHHhcCCC--------CceEEec---------------------------------------------
Q 010672 262 ----GFEPQIKKILSQIRPD--------RQTLYWS--------------------------------------------- 284 (504)
Q Consensus 262 ----~~~~~~~~il~~~~~~--------~~~i~~S--------------------------------------------- 284 (504)
.....+..++..+... .+.+.++
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 0112222333222111 1111111
Q ss_pred ----------------------------------------------------------------CCCcHHHHHHHHHhhc
Q 010672 285 ----------------------------------------------------------------ATWPKEVEHLARQYLY 300 (504)
Q Consensus 285 ----------------------------------------------------------------AT~~~~~~~~~~~~~~ 300 (504)
.|-..+..++...|..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1111111111111111
Q ss_pred CCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 301 NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+-+.+....+ ....-.......+...|...+++.+.. +..+.|+||-+.+.+..+.+++.|++.+++..+++..-.
T Consensus 388 ~vv~iPTnrp---~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 388 DVVVIPTNRP---IIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred ceeeccCCCc---ccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 1111100000 000001112233456777777766655 456679999999999999999999999999999888766
Q ss_pred HHHHHHHHHHHhcCCC-cEEEEccccccCCCCCCCC-----------EEEEcCCCCCHhHHHHHhcccccCCCcceEEEE
Q 010672 380 QAERDWVLSEFKAGKS-PIMTATDVAARGLDVKDVK-----------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~~-~vLVaT~~~~~Gvdi~~v~-----------~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~ 447 (504)
..+-+.+-+ .|+. -|-|||+++++|-||.--. +||-...-.|-.--.|-.||+||.|-+|.+-.|
T Consensus 465 ~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~ 541 (822)
T COG0653 465 AREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFY 541 (822)
T ss_pred HHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhh
Confidence 444333333 3433 3789999999999986322 344333334444445889999999988888777
Q ss_pred ecccc
Q 010672 448 FTAAN 452 (504)
Q Consensus 448 ~~~~~ 452 (504)
++-.|
T Consensus 542 lSleD 546 (822)
T COG0653 542 LSLED 546 (822)
T ss_pred hhhHH
Confidence 76544
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.24 E-value=1.2e-10 Score=111.71 Aligned_cols=73 Identities=26% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 121 EPTPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 121 ~~~~~Q~~~i----~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
+|+|.|.+.. ..+..+.++++.||||+|||+++++|++.++...... ....+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 4455788999999999999999999999887653211 02347999999999999988777765
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.24 E-value=1.2e-10 Score=111.71 Aligned_cols=73 Identities=26% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 121 EPTPIQAQGW----PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 121 ~~~~~Q~~~i----~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
+|+|.|.+.. ..+..+.++++.||||+|||+++++|++.++...... ....+++|+++|..+..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 4455788999999999999999999999887653211 02347999999999999988777765
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.18 E-value=3.2e-10 Score=117.04 Aligned_cols=301 Identities=19% Similarity=0.228 Sum_probs=175.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH-hcCCCCceEEEEECCCCCh
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKSTCIYGGVPKG 213 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~gg~~~~ 213 (504)
...-+++.+.||+|||..+.--+|..+..+. .+.-.-+.+.-|++..+.-+.+.+.+ -+...+-. .|. +.+
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns---~g~~~na~v~qprrisaisiaerva~er~e~~g~t----vgy-~vR 463 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENS---NGASFNAVVSQPRRISAISLAERVANERGEEVGET----CGY-NVR 463 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhcc---ccccccceeccccccchHHHHHHHHHhhHHhhccc----ccc-ccc
Confidence 3445778899999999998888888877753 22233477888888777776665543 11111100 010 110
Q ss_pred HhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHh---cCCCCceEEecCCCcHH
Q 010672 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ---IRPDRQTLYWSATWPKE 290 (504)
Q Consensus 214 ~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~---~~~~~~~i~~SAT~~~~ 290 (504)
-...--...--|.+||.+-++.++++.. ..+.++|+||+|...-. ...+..++.. ..++..++++|||+..+
T Consensus 464 f~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 464 FDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATIDTD 538 (1282)
T ss_pred ccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhcccchh
Confidence 0000001123589999999999887754 35788999999953322 1222333322 23455555666664322
Q ss_pred --------------------HHHHHHHhhcCCeEEEEcCCCccccccee-----------eeeeec--------------
Q 010672 291 --------------------VEHLARQYLYNPYKVIIGSPDLKANHAIR-----------QHVDIV-------------- 325 (504)
Q Consensus 291 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-------------- 325 (504)
++.+.......+................. ......
T Consensus 539 ~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~ 618 (1282)
T KOG0921|consen 539 LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS 618 (1282)
T ss_pred hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhh
Confidence 22222222222211111100000000000 000000
Q ss_pred --Chh----HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC-------CCCeEEecCCCCHHHHHHHHHHHhc
Q 010672 326 --SES----QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKA 392 (504)
Q Consensus 326 --~~~----~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~-------~~~~~~ih~~~~~~~r~~~~~~f~~ 392 (504)
.+. .-.+.++..+....-.+-++||.+--...-.|...|... .+++..+|+.....+..++.+....
T Consensus 619 ~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 619 RLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred cchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 000 111111111221112357999999988888888777432 4678889999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEEcCC------------------CCCHhHHHHHhcccccCCCcceEEEEec
Q 010672 393 GKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 393 g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~------------------p~s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
|..++++.|.+++..+.+.++..||..+. ..+....+||.||+||. +.|.|..+..
T Consensus 699 gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred cccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 99999999999999999988888774332 22677889999999997 7788877664
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.18 E-value=1.7e-08 Score=108.57 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCC--Ccc--------eEEEEeccccHHHHHHHHHHH
Q 010672 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG--AKG--------TAYTFFTAANARFAKELITIL 463 (504)
Q Consensus 394 ~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g--~~g--------~~~~~~~~~~~~~~~~l~~~l 463 (504)
..++|++.+++.+|.|.|++-+++-+....|...-.|.+||..|.- +.| .-.++.+.....++..|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998999999999999999942 222 234566778899999999988
Q ss_pred HHh
Q 010672 464 EEA 466 (504)
Q Consensus 464 ~~~ 466 (504)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 775
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.97 E-value=1.2e-08 Score=95.49 Aligned_cols=129 Identities=26% Similarity=0.290 Sum_probs=95.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
-..|++.|..++-.+..|+ |+...||-|||+++.+|+..+.+. +..|-|++....||..=.+++..+...
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 3478888888887665554 999999999999988887777665 677999999999999999999999999
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHH-HHHHcc----C--cccccccEEEEcCccccc
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESH----N--TNLRRVTYLVLDEADRML 259 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~-~~l~~~----~--~~l~~~~~lV~DEah~~~ 259 (504)
+++.+.++..+.+....... -.++|+.+|...|. ++|... . .....+.++|+||||.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999998765433333 34689999998875 344321 1 124678999999999764
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.86 E-value=4.8e-08 Score=99.73 Aligned_cols=116 Identities=18% Similarity=0.285 Sum_probs=94.6
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCCC------------------CeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEccc
Q 010672 345 SRILIFMDTKKGCDQITRQLRMDGW------------------PALSIHGDKSQAERDWVLSEFKAG---KSPIMTATDV 403 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~~~~------------------~~~~ih~~~~~~~r~~~~~~f~~g---~~~vLVaT~~ 403 (504)
.++|||.++....+.+.+.|.+..+ ...-+.|..+..+|++.+++|++. ..-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 4899999999999999999875322 233567888899999999999864 2247889999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHH
Q 010672 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 460 (504)
..-|||+-..+.+|.||.-|++-.-.|.+.|+-|.|+...|+++-.-.|..+-++|.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 999999999999999999999999999999999999999998876655444444443
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.84 E-value=1.3e-07 Score=101.90 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=56.6
Q ss_pred CCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 222 GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 222 ~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
...|+++||..|..-+..+..++.+++.|||||||++....-...+.++...-++..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 457999999999887888889999999999999999987766667777777777888899999984
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.82 E-value=9.7e-09 Score=108.34 Aligned_cols=260 Identities=20% Similarity=0.215 Sum_probs=162.8
Q ss_pred CCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 121 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
...|+|.+.+-.... ..++++-+|||+|||++|.++++..+...| +.++++++|.++|+..-.+.+.+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 445566665544443 356889999999999999998887766643 5779999999999988887777644444
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc--cCcccccccEEEEcCccccccCCcHHHHHHHHHhcC--
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-- 275 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~--~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~-- 275 (504)
++++..+.|....+ ... ....+++|+||+++.....+ ....+.+++.+|+||.|.+.+. +++.++.+....+
T Consensus 1001 g~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 88899888877665 222 23468999999999777664 3456788999999999987654 4555555544332
Q ss_pred -----CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC-------hhHHHHHHHHHHHhhcC
Q 010672 276 -----PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-------ESQKYNKLVKLLEDIMD 343 (504)
Q Consensus 276 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~k~~~l~~~l~~~~~ 343 (504)
+..+.+++|--+ .+..+++.+....+. .. ......+..+.-.+...+ ...+..-....++.+.+
T Consensus 1077 s~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~n--f~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-YN--FRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHhhhh-hccHHHHHHhCCCCc-CC--CCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 334555554332 334555555433332 11 111111111222221111 12233334566777888
Q ss_pred CCeEEEEeCCcccH----HHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Q 010672 344 GSRILIFMDTKKGC----DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396 (504)
Q Consensus 344 ~~~~lIf~~s~~~~----~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~ 396 (504)
..++|||+.+++.. ..+...+....-+..+++-+ ..+-+.++...++...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 88999999887754 44444444444455566554 66667777766655444
No 175
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.78 E-value=6.1e-08 Score=102.05 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhc-CC-CeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCC-CcE-EEEcccc
Q 010672 329 QKYNKLVKLLEDIM-DG-SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SPI-MTATDVA 404 (504)
Q Consensus 329 ~k~~~l~~~l~~~~-~~-~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~-~~v-LVaT~~~ 404 (504)
.++..++..|.... .. .+++||++-...++.+...|...++....+.|.|+...|...+..|.++. ..| +++..+.
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag 601 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAG 601 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHh
Confidence 34445555554321 11 38999999999999999999988888999999999999999999999653 344 4566899
Q ss_pred ccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEE
Q 010672 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446 (504)
Q Consensus 405 ~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~ 446 (504)
..|+|+..+.+|+..|+-||+....|.+-|+.|.|+.-.+.+
T Consensus 602 ~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 602 KVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999999999999999999998876555
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.67 E-value=4.5e-06 Score=87.08 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccC--CCcce-----------EEEEeccccHHHHHHH
Q 010672 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRA--GAKGT-----------AYTFFTAANARFAKEL 459 (504)
Q Consensus 393 g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~--g~~g~-----------~~~~~~~~~~~~~~~l 459 (504)
...++|++..++.+|.|=|+|=.++-.....|..+=.|-+||..|- .+.|. -.+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 23332 2356677788888888
Q ss_pred HHHHHHh
Q 010672 460 ITILEEA 466 (504)
Q Consensus 460 ~~~l~~~ 466 (504)
..-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766553
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.64 E-value=1.8e-07 Score=84.68 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 121 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
+|++-|.+++..++... -.++.++.|+|||.+ +..+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 46889999999997554 377789999999986 44355554442 5779999999988877666521
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccC----cccccccEEEEcCccccccCCcHHHHHHHHHhc
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~----~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~ 274 (504)
+-..|..+++....... ..+...++||||||-.+. ...+..++..+
T Consensus 68 --------------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --------------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --------------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --------------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 11223222222111111 115567899999999875 56777888777
Q ss_pred CC-CCceEEecCC
Q 010672 275 RP-DRQTLYWSAT 286 (504)
Q Consensus 275 ~~-~~~~i~~SAT 286 (504)
+. ..++|++--+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 65 5556655443
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.64 E-value=5.3e-07 Score=84.65 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=108.7
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 010672 103 DVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (504)
Q Consensus 103 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~----------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 172 (504)
.+.+|+.+++. -.+...|.+++-.+-+ ...+++-..||.||--...-.++.++... .
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r 91 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------R 91 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------C
Confidence 44788876553 2568889998865532 23588889999999876544456665542 4
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc---Cccc-----
Q 010672 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNL----- 244 (504)
Q Consensus 173 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~---~~~l----- 244 (504)
.+.|+++.+..|.......++.++.. .+.+..+..-... . . ..-...|+++|+..|...-.+. ...+
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~-~-~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG-D-I--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC-c-C--CCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 46999999999999999999988754 3444333321111 0 0 1223469999999987764321 1111
Q ss_pred ---cc-ccEEEEcCccccccCCcH--------HHHHHHHHhcCCCCceEEecCCCcHHH
Q 010672 245 ---RR-VTYLVLDEADRMLDMGFE--------PQIKKILSQIRPDRQTLYWSATWPKEV 291 (504)
Q Consensus 245 ---~~-~~~lV~DEah~~~~~~~~--------~~~~~il~~~~~~~~~i~~SAT~~~~~ 291 (504)
.+ -.+|||||||.+.+..-. ..+..+-..+ |+.+++.+|||...+.
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep 224 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEP 224 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCC
Confidence 11 258999999988765421 2233333445 6777999999965543
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.59 E-value=3.7e-07 Score=81.99 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHH----HHHHHh
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ----QESTKF 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~----~~~~~~ 195 (504)
...++.|..++.+++...-+++.+|.|||||+.++..++..+... .-.+++|+-|..+..+.+- +.-.++
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 345889999999999777789999999999999998888887653 3567899988875422110 000000
Q ss_pred cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
.+... .+.-.............+.....|-+.....+ . ...+. -.+||+|||+.+. ..+++.++.++.
T Consensus 77 ~p~~~-p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~-~~~iIvDEaQN~t----~~~~k~ilTR~g 144 (205)
T PF02562_consen 77 EPYLR-PIYDALEELFGKEKLEELIQNGKIEIEPLAFI----R--GRTFD-NAFIIVDEAQNLT----PEELKMILTRIG 144 (205)
T ss_dssp -TTTH-HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----T--T--B--SEEEEE-SGGG------HHHHHHHHTTB-
T ss_pred HHHHH-HHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----c--Ccccc-ceEEEEecccCCC----HHHHHHHHcccC
Confidence 00000 00000000001112222233344555543222 1 11232 3799999999975 678999999998
Q ss_pred CCCceEEecCC
Q 010672 276 PDRQTLYWSAT 286 (504)
Q Consensus 276 ~~~~~i~~SAT 286 (504)
.+.+++++--.
T Consensus 145 ~~skii~~GD~ 155 (205)
T PF02562_consen 145 EGSKIIITGDP 155 (205)
T ss_dssp TT-EEEEEE--
T ss_pred CCcEEEEecCc
Confidence 88877765443
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.57 E-value=7.5e-07 Score=83.23 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCC-CCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
+|++-|.+|+..++.... .++.+|+|+|||.+ +..++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999999999888 99999999999965 333555542100 00122377899999999999999988877
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.50 E-value=4.5e-07 Score=79.87 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=73.5
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCCC--CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--ccccCCCCCC--CCEEEE
Q 010672 345 SRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVIN 418 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~~~~--~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~--~~~~Gvdi~~--v~~VI~ 418 (504)
+.+|||++|.+..+.+.+.++.... ....+.. +..++..+++.|++++-.||+|+. .+++|||+|+ ++.||.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 6899999999999999999987531 1122222 355788899999999999999998 9999999996 778998
Q ss_pred cCCCC----C--------------------------HhHHHHHhcccccCCCcceEEEEeccc
Q 010672 419 YDFPG----S--------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 419 ~~~p~----s--------------------------~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
...|. + .....|.+||+-|...+--++++++..
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 88774 1 223458899999997776666666654
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.47 E-value=8.4e-05 Score=79.28 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
..+++.|.+|+..++.. ..+++.+|+|+|||.+. ..++.++... +.+||+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 56889999999999764 3345554442 55799999999998888888876
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.32 E-value=1.4e-05 Score=81.06 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=65.8
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010672 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (504)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 192 (504)
.+...++.+|+.-|..|+.++|+..=.|+++|+|+|||.+.. .++.|+..+ ....||+++|+..-+.|+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 455568889999999999999999999999999999998744 355566553 2556999999998889998888
Q ss_pred HHhcCCCCceEEEE
Q 010672 193 TKFGASSKIKSTCI 206 (504)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (504)
.+-+ ++|+-+
T Consensus 475 h~tg----LKVvRl 484 (935)
T KOG1802|consen 475 HKTG----LKVVRL 484 (935)
T ss_pred HhcC----ceEeee
Confidence 7754 555444
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.30 E-value=5.7e-05 Score=75.19 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=69.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
-++|.+..|||||++++- ++..+. ....+..++++++...|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 368889999999988544 444441 1123667999999999998888887663200
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-------cHHHHHHHHHh
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-------FEPQIKKILSQ 273 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-------~~~~~~~il~~ 273 (504)
......+..+..+...+.........+++|||||||++.... ...++..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233444444444333223445688999999999998731 24566666665
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.27 E-value=1.4e-05 Score=72.46 Aligned_cols=151 Identities=21% Similarity=0.343 Sum_probs=97.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~---~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
+|+....|++++-++.. -.-+++.|.+....+.+ +++.+.+.-+|.|||.+ ++|++..+.... ..-|.
T Consensus 4 ~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 56667788888776643 34789999999988875 57899999999999988 888888887642 34566
Q ss_pred EEcccHHHHHHHHHHHHH-hcCCCCceEEE--EECCCCChHh----H----HHHhcCCcEEEeChHHHHHHHHcc-----
Q 010672 177 VLAPTRELAVQIQQESTK-FGASSKIKSTC--IYGGVPKGPQ----V----RDLQKGVEIVIATPGRLIDMLESH----- 240 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~-~~~~~~~~~~~--~~gg~~~~~~----~----~~~~~~~~Iiv~T~~~l~~~l~~~----- 240 (504)
+++|. +|..|..+.+.. ++.-.+-++.. +.-....... . ........|+++||+.+..+.-..
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 77774 799999888875 44333333322 2222222111 1 122334579999999876543211
Q ss_pred --Cc-----------ccccccEEEEcCcccccc
Q 010672 241 --NT-----------NLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 241 --~~-----------~l~~~~~lV~DEah~~~~ 260 (504)
.. .+.....=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 122334568888887654
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.21 E-value=1.5e-05 Score=83.90 Aligned_cols=143 Identities=19% Similarity=0.215 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 201 (504)
..++|++|+..++..+-+++.+++|+|||++. ..++..+.... .....++++++||..-|..+.+.+........+
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999999999889999999999999863 23444433211 112457999999998888888776653322211
Q ss_pred eEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHH------ccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE------SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~------~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
. . ........-..|-.+|+.... ....+.-.+++||+||+-.+. ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcc
Confidence 0 0 000111112344444432211 111233456899999999763 567778888888
Q ss_pred CCCceEEecCC
Q 010672 276 PDRQTLYWSAT 286 (504)
Q Consensus 276 ~~~~~i~~SAT 286 (504)
+..++|++--.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 88888877644
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.21 E-value=1.9e-05 Score=83.08 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010672 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 202 (504)
.++|++|+..++..+-+++.++.|+|||++. ..++..+..... .....++++++||-.-|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999989999999999999863 334444432210 0113579999999888877777665532221110
Q ss_pred EEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc------cCcccccccEEEEcCccccccCCcHHHHHHHHHhcCC
Q 010672 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (504)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~------~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~ 276 (504)
. .......+-..|..+|+..... ...+...+++||||||-.+. ...+..++..+++
T Consensus 224 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred -----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224555554432211 11233468999999999764 5577788888888
Q ss_pred CCceEEecCC
Q 010672 277 DRQTLYWSAT 286 (504)
Q Consensus 277 ~~~~i~~SAT 286 (504)
..++|++--.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888876543
No 188
>PRK10536 hypothetical protein; Provisional
Probab=98.19 E-value=4.3e-05 Score=70.73 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=83.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH---------
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ--------- 187 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q--------- 187 (504)
.++...+..|...+.++.....+++.+|+|+|||+.++..++..+... .-.+++|.-|+.+..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 445567889999999998877888999999999998777666555442 14456667666543221
Q ss_pred --HHHHHHHhcCCCCceEEEEECCCCChHhHHHHh--cCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc
Q 010672 188 --IQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ--KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (504)
Q Consensus 188 --~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~--~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~ 263 (504)
+.-++.-+...+.. +.+. .....+. ....|-|... .++.... + +-++||+|||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l-~~~~vIvDEaqn~~---- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--F-ENAVVILDEAQNVT---- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--c-cCCEEEEechhcCC----
Confidence 11111111100000 0010 1112111 1224555553 2222222 2 34899999999875
Q ss_pred HHHHHHHHHhcCCCCceEEec
Q 010672 264 EPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 264 ~~~~~~il~~~~~~~~~i~~S 284 (504)
..++..++..+..+.++|+.-
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEeC
Confidence 578889998888777766543
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.18 E-value=1e-05 Score=84.78 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCC-----------C-----C-------------
Q 010672 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-----------F-----L------------- 167 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----------~-----~------------- 167 (504)
+|++.|..-+..++ ..++.++..|||+|||++-+-..|.+..... . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67888887776655 4678999999999999986655554332211 0 0
Q ss_pred -CC----CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCC--Ch---------------------------
Q 010672 168 -AP----GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP--KG--------------------------- 213 (504)
Q Consensus 168 -~~----~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~--~~--------------------------- 213 (504)
.. ..-|++.|-+-|..-..|+.+++++......+.| +-.-.. ..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtV--LgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTV--LGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEE--eecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 00 1147888888898888999999998755432222 111000 00
Q ss_pred -----------------------------------HhHHHHhcCCcEEEeChHHHHHHHHccC--cccccccEEEEcCcc
Q 010672 214 -----------------------------------PQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEAD 256 (504)
Q Consensus 214 -----------------------------------~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lV~DEah 256 (504)
-..+.+...++||+|-+..|++-..+.. .+|.+ .+|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 0012333456899999999988766654 45544 789999999
Q ss_pred cccc
Q 010672 257 RMLD 260 (504)
Q Consensus 257 ~~~~ 260 (504)
.|-+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8753
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.17 E-value=2.7e-05 Score=84.29 Aligned_cols=133 Identities=21% Similarity=0.147 Sum_probs=82.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010672 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (504)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 192 (504)
.+.+..-..+++-|.+|+..+...+-+++.++.|+|||.+. -.++..+... +....+++++||-.-|..+.+..
T Consensus 315 ~~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~ 388 (720)
T TIGR01448 315 EVEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT 388 (720)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc
Confidence 33333345899999999999998888999999999999863 3344443331 11256899999987776544322
Q ss_pred HHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-----cCcccccccEEEEcCccccccCCcHHHH
Q 010672 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-----HNTNLRRVTYLVLDEADRMLDMGFEPQI 267 (504)
Q Consensus 193 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-----~~~~l~~~~~lV~DEah~~~~~~~~~~~ 267 (504)
. .. ..|..+|+..... ...+....++||+|||+.+. ...+
T Consensus 389 g-------~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~ 433 (720)
T TIGR01448 389 G-------LT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLA 433 (720)
T ss_pred C-------Cc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHH
Confidence 1 10 0122222211000 01112357899999999874 4566
Q ss_pred HHHHHhcCCCCceEEecCC
Q 010672 268 KKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 268 ~~il~~~~~~~~~i~~SAT 286 (504)
..++..+++..++|++--+
T Consensus 434 ~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 434 LSLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHHhCCCCCEEEEECcc
Confidence 7777778777777776543
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.16 E-value=9.7e-06 Score=81.86 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
.+.+-|.+|+..+.+.++ +++.+|+|+|||.+... ++.++..+ +.+||+++||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 578889999999998876 67779999999988544 55555543 6789999999998888888543
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=97.90 E-value=6.1e-05 Score=56.45 Aligned_cols=60 Identities=33% Similarity=0.381 Sum_probs=40.2
Q ss_pred HHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010672 129 GWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (504)
Q Consensus 129 ~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 192 (504)
++...+.+.. +++.+|+|||||.+.+- ++.++.... ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAA-RIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHH-HHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444444 55699999999976444 444444210 112 567999999999999988887
No 193
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.83 E-value=0.00019 Score=78.14 Aligned_cols=122 Identities=20% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..+++-|.+|+..++.+ +-+++.++.|+|||.+ +-.+...+.. .+..+++++||-.-+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 46899999999998875 4578889999999976 3334333333 267799999997665544321
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~ 277 (504)
.++. -.|..++...+......+...++||+||+-.+.. ..+..++... ...
T Consensus 416 ~g~~------------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIE------------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAG 467 (744)
T ss_pred cCCc------------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcC
Confidence 1111 1233333222223333456789999999997753 3445555532 345
Q ss_pred CceEEec
Q 010672 278 RQTLYWS 284 (504)
Q Consensus 278 ~~~i~~S 284 (504)
.++|++-
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 5666555
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.81 E-value=0.00023 Score=78.68 Aligned_cols=124 Identities=23% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 120 FEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..|++-|.+|+..++.+++ +++.+..|+|||++ +-++...+.. .+.+|+.++||-.-|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 4799999999999998665 77889999999986 3334433333 26779999999765544332 1
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~ 277 (504)
.++ --.|..+|..........+...++|||||+-.+. ..++..++... ...
T Consensus 410 tGi------------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGI------------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred cCc------------------------chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 111 1123333322222233446677899999999765 34555666544 455
Q ss_pred CceEEecCC
Q 010672 278 RQTLYWSAT 286 (504)
Q Consensus 278 ~~~i~~SAT 286 (504)
.++|++-=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 666666544
No 195
>PRK04296 thymidine kinase; Provisional
Probab=97.74 E-value=8.5e-05 Score=66.92 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCCCChH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (504)
-.++.+|+|+|||+.++- ++..+.. .+.+++++-|. +.... ......++...
T Consensus 4 i~litG~~GsGKTT~~l~-~~~~~~~-------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~---------- 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ-RAYNYEE-------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE---------- 58 (190)
T ss_pred EEEEECCCCCHHHHHHHH-HHHHHHH-------cCCeEEEEeccccccccCC-------cEecCCCCccc----------
Confidence 367889999999987544 3333332 15678888663 21111 11111111100
Q ss_pred hHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.+.+.....+.+.+.. .-.++++||+||+|.+. ..++..++..+.+.-..+++++-
T Consensus 59 ---------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ---------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ---------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0223445555555443 23467899999998753 34456666664444445555544
No 196
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.67 E-value=0.004 Score=74.53 Aligned_cols=237 Identities=12% Similarity=0.175 Sum_probs=129.1
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 121 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
.|++-|.+++..++... -.++.++.|+|||.+ +-.++..+.. .+..|++++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 68899999999988764 488889999999976 3334433333 267899999998766666554321110
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~ 277 (504)
........+.. .....|...|. .....+...++||||||-.+. ...+..++... +.+
T Consensus 500 ------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 500 ------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 00011111111 11223333333 223345677899999999775 45667777655 467
Q ss_pred CceEEecCC--Cc----HHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc-CCCeEEEE
Q 010672 278 RQTLYWSAT--WP----KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIF 350 (504)
Q Consensus 278 ~~~i~~SAT--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf 350 (504)
.++|++--+ ++ -.+..++.........+. ... .....+ .+...+...+...+.+.+..+. +...++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~-~i~--rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWV-DTK--QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCCcEEEee-ccc--ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 788877655 12 123333333221111111 100 111111 1222234445555666555544 33369999
Q ss_pred eCCcccHHHHHHHHhh----CC------CCeEEe-cCCCCHHHHHHHHHHHhcCC
Q 010672 351 MDTKKGCDQITRQLRM----DG------WPALSI-HGDKSQAERDWVLSEFKAGK 394 (504)
Q Consensus 351 ~~s~~~~~~l~~~L~~----~~------~~~~~i-h~~~~~~~r~~~~~~f~~g~ 394 (504)
..+.++...|...++. .| .....+ -..++..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 9999888888877754 22 122222 235666666643 5555543
No 197
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.66 E-value=0.00039 Score=59.06 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=53.7
Q ss_pred ecCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCC--CCEEEEcCCCC---------------------------
Q 010672 374 IHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKD--VKYVINYDFPG--------------------------- 423 (504)
Q Consensus 374 ih~~~~~~~r~~~~~~f~~g~-~~vLVaT~~~~~Gvdi~~--v~~VI~~~~p~--------------------------- 423 (504)
+....+..+...+++.|++.. ..||+++.-+++|||+|+ ++.||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 334455556788899998654 379999977999999997 56788777663
Q ss_pred ----CHhHHHHHhcccccCCCcceEEEEec
Q 010672 424 ----SLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 424 ----s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
-.....|.+||+-|...+--++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 12345588899999866644555554
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.64 E-value=0.0012 Score=73.73 Aligned_cols=124 Identities=19% Similarity=0.104 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
..|++-|.+++..+... +-+++.++.|+|||++ +-++...+.. .+.+|+.++||-.-+..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e~------- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEKE------- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHHh-------
Confidence 47999999999988653 4488889999999986 3334444333 267799999997665544322
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC-CC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PD 277 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~-~~ 277 (504)
.++. -.|..+|+.........+..-++|||||+..+. ..++..++.... ..
T Consensus 445 ~Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 AGIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAG 496 (1102)
T ss_pred hCCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcC
Confidence 1111 123233321111223345667899999999764 455666666654 45
Q ss_pred CceEEecCC
Q 010672 278 RQTLYWSAT 286 (504)
Q Consensus 278 ~~~i~~SAT 286 (504)
.++|++-=+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 667766544
No 199
>PRK06526 transposase; Provisional
Probab=97.63 E-value=0.00026 Score=66.59 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=60.5
Q ss_pred HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCC
Q 010672 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (504)
Q Consensus 131 ~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~ 210 (504)
..+..++++++++|+|+|||..+.. +...+... +.+|++...+ +|..++....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a-l~~~a~~~-------g~~v~f~t~~-~l~~~l~~~~------------------ 145 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG-LGIRACQA-------GHRVLFATAA-QWVARLAAAH------------------ 145 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH-HHHHHHHC-------CCchhhhhHH-HHHHHHHHHH------------------
Confidence 3455678999999999999976543 33333321 4456554333 3444332110
Q ss_pred CChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc-HHHHHHHHHhcCCCCceEEecCCCcH
Q 010672 211 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPDRQTLYWSATWPK 289 (504)
Q Consensus 211 ~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~-~~~~~~il~~~~~~~~~i~~SAT~~~ 289 (504)
.. .+....+.. +..+++|||||+|.+..... ...+..++........+|+.|...+.
T Consensus 146 ---------~~------~~~~~~l~~-------l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 146 ---------HA------GRLQAELVK-------LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred ---------hc------CcHHHHHHH-------hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 00 111111111 34578999999997643221 23455555543334568887877655
Q ss_pred H
Q 010672 290 E 290 (504)
Q Consensus 290 ~ 290 (504)
.
T Consensus 204 ~ 204 (254)
T PRK06526 204 R 204 (254)
T ss_pred H
Confidence 4
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.62 E-value=0.00038 Score=74.15 Aligned_cols=146 Identities=21% Similarity=0.150 Sum_probs=88.5
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 173 (504)
|+.+..-....+++.+.+. -+..|+.-|++|+..++..+| .++.+=+|+|||.+... ++.-+.. .++
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gk 714 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGK 714 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCC
Confidence 3333333334455555543 234789999999999998887 77779999999986332 3333333 277
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh-----------------HHHHhcCCcEEEeChHHHHHH
Q 010672 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ-----------------VRDLQKGVEIVIATPGRLIDM 236 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-----------------~~~~~~~~~Iiv~T~~~l~~~ 236 (504)
+||+.+=|..-+..+.-.++.+... ..-+-......++ ....-....|+.||---+.+-
T Consensus 715 kVLLtsyThsAVDNILiKL~~~~i~----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKGFGIY----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhccCcc----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 8999999987777777666665422 2111111111122 222334466777774333222
Q ss_pred HHccCcccccccEEEEcCcccccc
Q 010672 237 LESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 237 l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
+ +..+.|++.|+|||-.+..
T Consensus 791 l----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 791 L----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred h----hhccccCEEEEcccccccc
Confidence 2 2345699999999998763
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.60 E-value=0.00062 Score=65.20 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=87.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCc--EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 117 AGFFEPTPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
.|+...+..|.-|+..++...- +.+.++.|||||+.++.+.+.+...++ ...++|+-=|+..+-+.+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~vpvG~dIG----- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPTVPVGEDIG----- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCCcCcccccC-----
Confidence 5777778889999999886543 777799999999999999888887653 2456888878765543220
Q ss_pred hcCCCCceEEEEECCCCChHhHHHHhcCCcEE----EeChHHHHHHHHccCccccc----------ccEEEEcCcccccc
Q 010672 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIV----IATPGRLIDMLESHNTNLRR----------VTYLVLDEADRMLD 260 (504)
Q Consensus 195 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ii----v~T~~~l~~~l~~~~~~l~~----------~~~lV~DEah~~~~ 260 (504)
|.+... .....++...+...-.++ =++.+.|...+.+..+.+.. -.+||+|||+.+.
T Consensus 294 fLPG~e--------EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT- 364 (436)
T COG1875 294 FLPGTE--------EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT- 364 (436)
T ss_pred cCCCch--------hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-
Confidence 000000 000001111111100011 12233444444433322111 2589999999984
Q ss_pred CCcHHHHHHHHHhcCCCCceEEec
Q 010672 261 MGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 261 ~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+++.|+...-+..+++++.
T Consensus 365 ---pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ---PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ---HHHHHHHHHhccCCCEEEEcC
Confidence 778999999998888877654
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.59 E-value=0.00036 Score=59.38 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCC---cEEEEccc--cccCCCCCC--CCEEEEcCCCC----C-------------------------
Q 010672 381 AERDWVLSEFKAGKS---PIMTATDV--AARGLDVKD--VKYVINYDFPG----S------------------------- 424 (504)
Q Consensus 381 ~~r~~~~~~f~~g~~---~vLVaT~~--~~~Gvdi~~--v~~VI~~~~p~----s------------------------- 424 (504)
.+...+++.|++..- .||+++.- +++|||+|+ ++.||....|. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345678888886543 59988866 999999997 67888877663 1
Q ss_pred --HhHHHHHhcccccCCCcceEEEEecc
Q 010672 425 --LEDYVHRIGRTGRAGAKGTAYTFFTA 450 (504)
Q Consensus 425 --~~~~~QriGR~gR~g~~g~~~~~~~~ 450 (504)
.....|.+||+-|...+--++++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 12455889999998766555555543
No 203
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.00045 Score=69.89 Aligned_cols=145 Identities=21% Similarity=0.184 Sum_probs=73.3
Q ss_pred EEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-----HhcCCCCceEEEEECCCCChH-
Q 010672 141 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-----KFGASSKIKSTCIYGGVPKGP- 214 (504)
Q Consensus 141 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-----~~~~~~~~~~~~~~gg~~~~~- 214 (504)
..++||||||++..-.+|. +..+. ....|+.|......+....-+. +|.-.. ...+++.....
T Consensus 2 f~matgsgkt~~ma~lil~-~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e----~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILE-CYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSE----NININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHHHHHH-HHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhh----hhhcCCceeeee
Confidence 3578999999985554444 33321 2336666666555544433221 111000 01111111100
Q ss_pred ---hHHHHhcCCcEEEeChHHHHHHHHccCc------ccccccE-EEEcCccccccCC-------------cHHHHHHHH
Q 010672 215 ---QVRDLQKGVEIVIATPGRLIDMLESHNT------NLRRVTY-LVLDEADRMLDMG-------------FEPQIKKIL 271 (504)
Q Consensus 215 ---~~~~~~~~~~Iiv~T~~~l~~~l~~~~~------~l~~~~~-lV~DEah~~~~~~-------------~~~~~~~il 271 (504)
.......+..|+++|.+.|...+.+..- ++.+..+ ++-||||++-... |...+...+
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 0111234568999999998776654322 2344444 4559999875321 222222212
Q ss_pred HhcCCCCceEEecCCCcHHHHHHHHHh
Q 010672 272 SQIRPDRQTLYWSATWPKEVEHLARQY 298 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT~~~~~~~~~~~~ 298 (504)
. -.++.-++.+|||+|. -..+...|
T Consensus 151 ~-~nkd~~~lef~at~~k-~k~v~~ky 175 (812)
T COG3421 151 E-QNKDNLLLEFSATIPK-EKSVEDKY 175 (812)
T ss_pred h-cCCCceeehhhhcCCc-cccHHHHh
Confidence 1 2356668899999984 33333333
No 204
>PRK08181 transposase; Validated
Probab=97.51 E-value=0.002 Score=60.98 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=66.8
Q ss_pred cHHHHHHHH----HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 123 TPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 123 ~~~Q~~~i~----~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
.+.|..++. ++-.++++++++|+|+|||..+.. +...+..+ +..|+++. ..+|..++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~-------g~~v~f~~-~~~L~~~l~~a~~~---- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN-------GWRVLFTR-TTDLVQKLQVARRE---- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc-------CCceeeee-HHHHHHHHHHHHhC----
Confidence 444554442 344678899999999999975433 33333332 44465554 45565555322100
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc-HHHHHHHHHhcCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPD 277 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~-~~~~~~il~~~~~~ 277 (504)
.+.+.++.. +.++++|||||++.+....+ ...+..++......
T Consensus 156 -----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 156 -----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER 199 (269)
T ss_pred -----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC
Confidence 122222222 34578999999997654332 23455666554344
Q ss_pred CceEEecCCCcHHH
Q 010672 278 RQTLYWSATWPKEV 291 (504)
Q Consensus 278 ~~~i~~SAT~~~~~ 291 (504)
..+|+.|-..+...
T Consensus 200 ~s~IiTSN~~~~~w 213 (269)
T PRK08181 200 RSILITANQPFGEW 213 (269)
T ss_pred CCEEEEcCCCHHHH
Confidence 56777676655543
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=97.48 E-value=0.0022 Score=62.71 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=75.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCCCChH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (504)
-+++++++|+|||++..- +...+... +.+++++... ..-..|+......++ +.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~---- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGA---- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCC----
Confidence 377889999999986333 22333321 4456665543 344456655555443 3322111111
Q ss_pred hHHHHhcCCcEEEeChHH-HHHHHHccCcccccccEEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHH
Q 010672 215 QVRDLQKGVEIVIATPGR-LIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~-l~~~l~~~~~~l~~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~ 292 (504)
.|.. +.+.+... .....++|++|.+.++.. ......++++.....++..++.++||...+..
T Consensus 206 --------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 --------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred --------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 11222211 113567999999999863 33456777888778888889999999877766
Q ss_pred HHHHHhh
Q 010672 293 HLARQYL 299 (504)
Q Consensus 293 ~~~~~~~ 299 (504)
+.+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666654
No 206
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.48 E-value=0.00057 Score=64.26 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=64.4
Q ss_pred HHHHHHhcCCCcEEEEccccccCCCCCC--------CCEEEEcCCCCCHhHHHHHhcccccCCCc-ceEEEEeccc---c
Q 010672 385 WVLSEFKAGKSPIMTATDVAARGLDVKD--------VKYVINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTAA---N 452 (504)
Q Consensus 385 ~~~~~f~~g~~~vLVaT~~~~~Gvdi~~--------v~~VI~~~~p~s~~~~~QriGR~gR~g~~-g~~~~~~~~~---~ 452 (504)
...+.|.+|+.+|+|.++.++.|+.+.+ -++.|...+|||.+..+|.+||+.|.++. .-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 3467899999999999999999999874 34678899999999999999999999885 4445555433 6
Q ss_pred HHHHHHHHHHHHHh
Q 010672 453 ARFAKELITILEEA 466 (504)
Q Consensus 453 ~~~~~~l~~~l~~~ 466 (504)
.+++..+.+.|+..
T Consensus 132 ~Rfas~va~rL~sL 145 (278)
T PF13871_consen 132 RRFASTVARRLESL 145 (278)
T ss_pred HHHHHHHHHHHhhc
Confidence 66666666666553
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0063 Score=60.74 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=68.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE-EEccc-HHHHHHHHHHHHHhcCCCCceEEEEECCCCChH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL-VLAPT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl-il~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (504)
+.+++++|||+|||++..--+ .++... ....+.+|. +-+.+ |.-+. ++++.++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~---~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~---------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGIN---SDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVK---------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhh---hccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceE----------
Confidence 358889999999998754322 222211 001133343 33333 23322 224444444344322
Q ss_pred hHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcCCC-CceEEecCCCcH-HH
Q 010672 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPD-RQTLYWSATWPK-EV 291 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~~~-~~~i~~SAT~~~-~~ 291 (504)
++-++..+...+.. +.++++|++|++.+..... ....+..++....+. ..++.+|||... .+
T Consensus 238 -----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred -----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 12234444444432 3568999999999876321 123455555555433 467889999853 34
Q ss_pred HHHHHHh
Q 010672 292 EHLARQY 298 (504)
Q Consensus 292 ~~~~~~~ 298 (504)
.+....+
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 4455555
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.39 E-value=0.0006 Score=57.21 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=12.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
++.+++.|++|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3558899999999998643
No 209
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.37 E-value=0.0017 Score=64.79 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 119 FFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
|...+|-|.+-.-.+. .+.+.++.+|+|+|||.+.+--++.+....| ....++++++-|..=.+....+++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p----~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP----DEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC----cccceEEEecCcchHHHHHHHHHHH
Confidence 3445666665554433 4567999999999999885555555555543 2355688888776555555555554
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.33 E-value=0.0025 Score=54.14 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchHHH
Q 010672 136 GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (504)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999975
No 211
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.31 E-value=0.00067 Score=66.33 Aligned_cols=123 Identities=20% Similarity=0.082 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 201 (504)
|++-|.+++.. ....++|.|..|||||.+.+--++..+.... ....++|++++|+..+.++.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47789999887 6678999999999999985554444343321 23456999999999999999988875432210
Q ss_pred eEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCccc--ccccEEEEcCcc
Q 010672 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNL--RRVTYLVLDEAD 256 (504)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l--~~~~~lV~DEah 256 (504)
.. ............-..+.|+|...+...+.+..... -.-.+-++|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00001111222345789999988765443322111 123467777776
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.0083 Score=55.99 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=61.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
..+++.+++|+|||..+. ++..++... +..++++ +..+|...+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~~---~------------------ 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR-------GKSVLII-TVADIMSAMKDTFSN---S------------------ 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHhh---c------------------
Confidence 468999999999997643 355555442 4556666 334444433332210 0
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHH-HHHHHHHh-cCCCCceEEecCCCcHHHH
Q 010672 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILSQ-IRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~-~~~~il~~-~~~~~~~i~~SAT~~~~~~ 292 (504)
+ .+.+.+++. +.++++|||||++......+.. .+..|+.. ......+++.|---+.++.
T Consensus 150 -------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 150 -------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred -------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 122233332 3468899999999876554443 34445544 2345667777776555443
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0029 Score=62.52 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
+..+++++|||+|||+....-+...+... + ..++.+++. ...-.--.+.++.|+...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G-~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~----------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-----G-ASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH----------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----C-CCeEEEEec-ccccccHHHHHHHHHHHcCCceE-----------
Confidence 45688999999999987544222222221 1 123444432 22211112333333333233222
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcCCCCceEEecCCCcHHH-HH
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEV-EH 293 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~~~~~~i~~SAT~~~~~-~~ 293 (504)
.+.+++.+...+.. +.+.++|+||++-+..... ....+..+.....+...++.+|||..... .+
T Consensus 199 ----------~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 199 ----------AVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ----------ecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 23333334333322 3457899999997643221 22333333232334456888999985443 44
Q ss_pred HHHHhh
Q 010672 294 LARQYL 299 (504)
Q Consensus 294 ~~~~~~ 299 (504)
.+..|.
T Consensus 265 vi~~f~ 270 (374)
T PRK14722 265 VVQAYR 270 (374)
T ss_pred HHHHHH
Confidence 555554
No 214
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.21 E-value=3.1e-05 Score=81.11 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc---CCCcEEEEccc
Q 010672 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDV 403 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~---g~~~vLVaT~~ 403 (504)
..|...|...++... .+++|+||..-.+..+.+..++...+ ....+.|..+..+|+.++++|+. .+..+|.+|..
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 345555666665544 45699999999999999999999888 88899999999999999999993 36678899987
Q ss_pred cccC
Q 010672 404 AARG 407 (504)
Q Consensus 404 ~~~G 407 (504)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 6544
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.013 Score=57.96 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=70.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc-c-H-HHHHHHHHHHHHhcCCCCceEEEEECCCCCh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-T-R-ELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P-t-~-~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 213 (504)
+.+++++|||+|||+....-+ ..+..+ +.++.++.. + | .-+.|+...... .+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~~-------GkkVglI~aDt~RiaAvEQLk~yae~----lg------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IG------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHHc-------CCcEEEEecCCcchHHHHHHHHHhhh----cC-------------
Confidence 457889999999998744422 233321 444544443 3 2 233444432222 22
Q ss_pred HhHHHHhcCCcEE-EeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcCCCCceEEecCCCc-HH
Q 010672 214 PQVRDLQKGVEIV-IATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 290 (504)
Q Consensus 214 ~~~~~~~~~~~Ii-v~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~~~~~~i~~SAT~~-~~ 290 (504)
+.++ +.+|..+.+.+..... ..++++|++|-+=+..... .-..+..++....++.-++.+|||.. ++
T Consensus 297 ---------ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 297 ---------FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ---------CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 2333 3466666665543211 1257899999997755331 23344555555556666677999765 45
Q ss_pred HHHHHHHhh
Q 010672 291 VEHLARQYL 299 (504)
Q Consensus 291 ~~~~~~~~~ 299 (504)
+.+.+..|-
T Consensus 367 ~~~i~~~F~ 375 (436)
T PRK11889 367 MIEIITNFK 375 (436)
T ss_pred HHHHHHHhc
Confidence 566666654
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0014 Score=55.33 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
+..+++.+|+|+|||..+.. ++..+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEcc
Confidence 45689999999999986432 33332221 1347777776544
No 217
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0018 Score=60.52 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=39.9
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcC
Q 010672 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQ 164 (504)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~ 164 (504)
..+|..+.+|+++++|+-+.+.+ ...+. +|+.+|||||||++ +.+++.++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~-------------------~~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELA-------------------ESPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHH-------------------hCCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 35788899999999998876622 22233 77789999999987 66688888764
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.07 E-value=0.0031 Score=59.21 Aligned_cols=60 Identities=8% Similarity=0.212 Sum_probs=40.1
Q ss_pred CcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC---cHHHHHHHHHhhcC
Q 010672 241 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW---PKEVEHLARQYLYN 301 (504)
Q Consensus 241 ~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~---~~~~~~~~~~~~~~ 301 (504)
......++++||||||.|.... ...+++.++.......+++.+.-+ +..+..-...|...
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 3345678999999999998765 456777787777777777776654 33344444444433
No 219
>PRK06921 hypothetical protein; Provisional
Probab=97.05 E-value=0.014 Score=55.39 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
+..+++.+++|+|||..+ .++...+..+ .+..|+++.. .++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEEH-HHHHHHH
Confidence 567999999999999753 3344444432 1445666654 3444443
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.04 E-value=0.0013 Score=59.40 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=36.5
Q ss_pred ccccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHh
Q 010672 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~ 298 (504)
+++++|++|-+-+.... .....+.+++..+.+..-.+.+|||...+..+.+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 35789999998765422 2345677777777788888999999876554444443
No 221
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.99 E-value=0.016 Score=57.16 Aligned_cols=136 Identities=19% Similarity=0.230 Sum_probs=77.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
++.+.+++|||.|||++-.--+...... .+.....||-+.|--.. -+++++.|+.-.++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 5668899999999998733222222211 11234456655553332 2344555543333322
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc-cCCcHHHHHHHHHhcCCCCceEEecCCCcH-HHHH
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPK-EVEH 293 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~-~~~~~~~~~~il~~~~~~~~~i~~SAT~~~-~~~~ 293 (504)
.++-+|.-|...+.. +.++++|.+|=+-+-. |.....+++.++....+....+.+|||... ++.+
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 344566666655443 5677899999887533 222345566666666556667889999753 4556
Q ss_pred HHHHhhcCCe
Q 010672 294 LARQYLYNPY 303 (504)
Q Consensus 294 ~~~~~~~~~~ 303 (504)
....|..-++
T Consensus 331 i~~~f~~~~i 340 (407)
T COG1419 331 IIKQFSLFPI 340 (407)
T ss_pred HHHHhccCCc
Confidence 6666654443
No 222
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.96 E-value=0.056 Score=56.20 Aligned_cols=210 Identities=14% Similarity=0.242 Sum_probs=123.6
Q ss_pred ccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcC-CeEEE-EcCCCcc-----------
Q 010672 247 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVI-IGSPDLK----------- 313 (504)
Q Consensus 247 ~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~-~~~~~~~----------- 313 (504)
++++.+|-|.++ ..++... +-+++.-.|+.+ +.++...++.. |..+. .......
T Consensus 527 lky~lL~pA~~f---------~evv~ea---ravvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKHF---------AEVVLEA---RAVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHHH---------HHHHHHh---heeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeeec
Confidence 567777776652 2333332 347888899866 66666655541 11100 0000000
Q ss_pred ---cccceeeeeeecChhHHHHHHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHhhCCCC-------eEEecCCCCH
Q 010672 314 ---ANHAIRQHVDIVSESQKYNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRMDGWP-------ALSIHGDKSQ 380 (504)
Q Consensus 314 ---~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-------~~~ih~~~~~ 380 (504)
....+...+........+..|-..+.. ..+ +-+++|+++......+...+.+.|+- .++.-...+
T Consensus 594 ~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~- 671 (821)
T KOG1133|consen 594 SGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT- 671 (821)
T ss_pred cCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc-
Confidence 111122333333344445555444433 345 45999999999999998888865531 222222222
Q ss_pred HHHHHHHHHHh----cCCCcEEEEc--cccccCCCCCC--CCEEEEcCCCCC----------------------------
Q 010672 381 AERDWVLSEFK----AGKSPIMTAT--DVAARGLDVKD--VKYVINYDFPGS---------------------------- 424 (504)
Q Consensus 381 ~~r~~~~~~f~----~g~~~vLVaT--~~~~~Gvdi~~--v~~VI~~~~p~s---------------------------- 424 (504)
-+.+++.|. .|.-.+|+|. .-+++|||+.+ ++.||.+++|..
T Consensus 672 --~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~y 749 (821)
T KOG1133|consen 672 --VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELY 749 (821)
T ss_pred --HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHH
Confidence 344566665 4555677776 77899999986 678888887641
Q ss_pred ----HhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCC
Q 010672 425 ----LEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPP 483 (504)
Q Consensus 425 ----~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~ 483 (504)
+...-|.||||-|.-++-.++++++.. |.....+ .+|.|+.+......+
T Consensus 750 EnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R---Y~~p~~R-------KLp~WI~~~v~s~~~ 802 (821)
T KOG1133|consen 750 ENLCMKAVNQSIGRAIRHRKDYASIYLLDKR---YARPLSR-------KLPKWIRKRVHSKAG 802 (821)
T ss_pred HHHHHHHHHHHHHHHHhhhccceeEEEehhh---hcCchhh-------hccHHHHhHhccccC
Confidence 223459999999997777788887653 3322222 679999888766544
No 223
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.0043 Score=60.76 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHHhcCC----cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~----~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.++|||...|..+.... -+|+.+|.|.|||..+.. +...+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 35899999998887543 388999999999987554 4455554
No 224
>PRK05642 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.0037 Score=58.30 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=28.7
Q ss_pred cccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcH
Q 010672 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK 289 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~ 289 (504)
++++||+|++|.+... .+...+..++..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 5678999999987543 3455677777766554445556666443
No 225
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.89 E-value=0.0095 Score=68.89 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHH--HHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 010672 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYL--LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~--l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 189 (504)
..|++-|.+|+..++.. +-+++.+..|+|||.+.- +.++..+.. ..+..++.++||-.-+..+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 37899999999999965 558888999999998632 222222221 12567999999976665553
No 226
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.86 E-value=0.0048 Score=67.85 Aligned_cols=153 Identities=17% Similarity=0.093 Sum_probs=91.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCC----------CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEE
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQP----------FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----------~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 205 (504)
|+++++....|.|||..-+...+...-... ........-.|||+|. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 456888899999999886554443321110 0011113448999997 78899999999987554 66665
Q ss_pred EECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc--------------c----ccccc--EEEEcCccccccCCcHH
Q 010672 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------------N----LRRVT--YLVLDEADRMLDMGFEP 265 (504)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~--------------~----l~~~~--~lV~DEah~~~~~~~~~ 265 (504)
..|-...........-.+|||++|+..|..-+..... + |-.+. -|++|||+.+-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 5553221111112223589999999998765532210 0 11111 2899999976542 44
Q ss_pred HHHHHHHhcCCCCceEEecCCCcHHHHH
Q 010672 266 QIKKILSQIRPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 266 ~~~~il~~~~~~~~~i~~SAT~~~~~~~ 293 (504)
...+.+..+ +....-..|+|+-..+.+
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhhhhh
Confidence 555555555 344567789996444433
No 227
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.85 E-value=0.0039 Score=62.29 Aligned_cols=60 Identities=27% Similarity=0.331 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 121 EPTPIQAQGWPMA------LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 121 ~~~~~Q~~~i~~~------l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
+|++-|++++..+ ..+..+++.++-|+|||++ +-++.+.... .+..+++++||-.=|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998887 5677899999999999985 3233333321 366799999996554443
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.006 Score=59.27 Aligned_cols=143 Identities=21% Similarity=0.191 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHhc----CC---cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010672 120 FEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 192 (504)
..++|||..+|..+.+ ++ -+++.+|.|+||+..+.. +...+....... .+ .|+.. ..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~~--~~-----~c~~c-------~~~ 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPDP--AA-----AQRTR-------QLI 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCCC--CC-----cchHH-------HHH
Confidence 4679999999987653 33 388999999999976544 555555532111 00 11111 111
Q ss_pred HHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHH
Q 010672 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (504)
Q Consensus 193 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~ 272 (504)
.. +...++.++......... .....|.|-..-.+.+.+... ......+++||||||.|.... ...+.++++
T Consensus 68 ~~-g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~-p~~g~~kV~iI~~ae~m~~~A-aNaLLKtLE 138 (319)
T PRK08769 68 AA-GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT-PQYGIAQVVIVDPADAINRAA-CNALLKTLE 138 (319)
T ss_pred hc-CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC-cccCCcEEEEeccHhhhCHHH-HHHHHHHhh
Confidence 11 122233322101100000 000123322222233333222 223467899999999997654 556777777
Q ss_pred hcCCCCceEEecCC
Q 010672 273 QIRPDRQTLYWSAT 286 (504)
Q Consensus 273 ~~~~~~~~i~~SAT 286 (504)
.-+++..+|+.|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 76666666666654
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.82 E-value=0.023 Score=54.10 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=59.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
.+++.+++|+|||..+. ++...+..+ +..++++ +..+|..++...+.... .
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~~~~~~~~---------------~----- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIKSTYKSSG---------------K----- 166 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHHHHHhccc---------------c-----
Confidence 49999999999997644 356665542 3345554 44556554443332100 0
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhc-CCCCceEEecCCCcHHHH
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~ 292 (504)
.+...+++. +.+.++|||||++...... ....+..|+... .....+|+.|...|.++.
T Consensus 167 ----------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 ----------EDENEIIRS-------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred ----------ccHHHHHHH-------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 011112222 3456899999996432222 133455555543 345667877777666554
No 230
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.81 E-value=0.0046 Score=55.41 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=33.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+++.+|+|+|||..++-.+...+.. +..++|++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6889999999998655434433322 566888865 456677777777664
No 231
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.81 E-value=0.015 Score=68.21 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 120 FEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
..|++-|.+|+..++... -+++.+..|+|||.+ +-.++..+... ....+..|+.++||-.-+.++.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~e----~-- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMRS----A-- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHHh----c--
Confidence 468999999999999764 488889999999986 33333333211 11125679999999766654432 1
Q ss_pred CCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHH----ccCcccccccEEEEcCccccccCCcHHHHHHHHHh
Q 010672 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE----SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (504)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~----~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~ 273 (504)
++. -.|..+|+.... .........++|||||+-.+. ...+..++..
T Consensus 1036 --Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~ 1085 (1747)
T PRK13709 1036 --GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYAL 1085 (1747)
T ss_pred --Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHh
Confidence 111 123222222110 111122345899999999775 3445566665
Q ss_pred cCC-CCceEEecCC
Q 010672 274 IRP-DRQTLYWSAT 286 (504)
Q Consensus 274 ~~~-~~~~i~~SAT 286 (504)
+.. ..++|++-=+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 543 5666665544
No 232
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.77 E-value=0.0038 Score=58.02 Aligned_cols=87 Identities=28% Similarity=0.361 Sum_probs=66.3
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCC-CChHhHHHHhc-CCcEEEeChHHHHHHHHccCcccccc
Q 010672 170 GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV-PKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 170 ~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
...|.+|||+..-.-|..+...++.|.. ....++.++.-. ...+++..+.. ..+|.|+||+||..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3478999999998888888888888741 113333344332 44556666653 68999999999999999999999999
Q ss_pred cEEEEcCccc
Q 010672 248 TYLVLDEADR 257 (504)
Q Consensus 248 ~~lV~DEah~ 257 (504)
.+||||--|+
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 233
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.033 Score=56.63 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH-hcCCCCCCCCCCEEEEEc-cc-HHHHHHHHHHHHHhcCCCCceEEEEECCCCC
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVLA-PT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l-~~~~~~~~~~~~~vlil~-Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~ 212 (504)
++.+++.+|||+|||++...-+.... ... +.+|.++. .+ |.-+ .+.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-------g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-------KKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 44688889999999987543222222 121 33444443 33 2211 123333332222221
Q ss_pred hHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccC-CcHHHHHHHHH-hcCCCCceEEecCCCcH-
Q 010672 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILS-QIRPDRQTLYWSATWPK- 289 (504)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~-~~~~~~~~il~-~~~~~~~~i~~SAT~~~- 289 (504)
..+.++..+...+.. +.++++|+||.+-+.... .....+..++. ...+....+.+|||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 122445555555443 336799999999764322 12334555555 22344557889998764
Q ss_pred HHHHHHHHhh
Q 010672 290 EVEHLARQYL 299 (504)
Q Consensus 290 ~~~~~~~~~~ 299 (504)
.+.+....|-
T Consensus 346 ~l~~~~~~f~ 355 (424)
T PRK05703 346 DLKDIYKHFS 355 (424)
T ss_pred HHHHHHHHhC
Confidence 4555555553
No 234
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.74 E-value=0.0072 Score=66.16 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|+|-|.+++... ...++|.|..|||||.+. ..-+.++.... .-....+|+|+-|+..|.++.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~---~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVL-VHRIAWLMQVE---NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHH-HHHHHHHHHcC---CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5899999998643 467999999999999884 33444555421 1124569999999999999999998864
No 235
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.73 E-value=0.0083 Score=65.68 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..|++-|.+++... ...++|.|..|||||.+. ..-+.++.... .-...++|+|+-|+.-|.++.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~---~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVL-THRIAWLLSVE---NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHH-HHHHHHHHHcC---CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998653 467999999999999884 44445555421 1124569999999999999999998864
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.71 E-value=0.0064 Score=56.78 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=26.1
Q ss_pred ccEEEEcCccccccC-CcHHHHHHHHHhcCC--CCceEEecCCCcHH
Q 010672 247 VTYLVLDEADRMLDM-GFEPQIKKILSQIRP--DRQTLYWSATWPKE 290 (504)
Q Consensus 247 ~~~lV~DEah~~~~~-~~~~~~~~il~~~~~--~~~~i~~SAT~~~~ 290 (504)
+++|+|||+|.+... .+...+..++..+.. ..++++.|...|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 478999999988643 345555566655432 23455544444443
No 237
>PRK08727 hypothetical protein; Validated
Probab=96.68 E-value=0.018 Score=53.64 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=27.9
Q ss_pred ccccEEEEcCccccccCC-cHHHHHHHHHhcC-CCCceEEecCCCcHHH
Q 010672 245 RRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~-~~~~~i~~SAT~~~~~ 291 (504)
.++++||+||+|.+.... ....+..++.... ...++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 356789999999886433 2334445554443 2345666666655544
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=96.67 E-value=0.092 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.9
Q ss_pred HhcCCcEEEEccCCCchHHHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l 155 (504)
+..+.++++.+|+|+|||..+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 55678899999999999976443
No 239
>PHA02533 17 large terminase protein; Provisional
Probab=96.66 E-value=0.013 Score=61.10 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=84.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
..|.|+|.+.+..+..++-.++..+=..|||.+....++..+... .+..+++++|+..-|..+.+.++......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 368999999998776566667778888999988665454444332 15589999999999988888777543221
Q ss_pred C--ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCC-
Q 010672 200 K--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP- 276 (504)
Q Consensus 200 ~--~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~- 276 (504)
. +....... ......+.++..|.+.|.+. ....=....++|+||+|.+.+. ...+..+...+..
T Consensus 132 P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcC
Confidence 1 01000000 00111123455554444210 1111224678999999987542 3333444333332
Q ss_pred -CCceEEecCCC
Q 010672 277 -DRQTLYWSATW 287 (504)
Q Consensus 277 -~~~~i~~SAT~ 287 (504)
..+++++|.+.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555553
No 240
>PRK12377 putative replication protein; Provisional
Probab=96.64 E-value=0.036 Score=51.90 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=58.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
.++++.+++|+|||..+. ++...+... +..|+++ +..+|..++...+.. .
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~~~~~---~------------------ 151 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLAK-------GRSVIVV-TVPDVMSRLHESYDN---G------------------ 151 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc-------CCCeEEE-EHHHHHHHHHHHHhc---c------------------
Confidence 579999999999997633 344555432 3445444 445666655443211 0
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc-HHHHHHHHHhc-CCCCceEEecCCCcHH
Q 010672 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQI-RPDRQTLYWSATWPKE 290 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~-~~~~~~il~~~-~~~~~~i~~SAT~~~~ 290 (504)
.+...+++. +.++++|||||++......+ ...+..|+..- .....+|+.|---+.+
T Consensus 152 -----------~~~~~~l~~-------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 152 -----------QSGEKFLQE-------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred -----------chHHHHHHH-------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 011112222 45789999999965433322 23444455443 3346677776654443
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.63 E-value=0.016 Score=50.25 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=23.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
+++.+++|+|||..+.. ++..+.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcch
Confidence 67899999999986443 3333322 14557777665433
No 242
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.62 E-value=0.0027 Score=72.43 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=77.0
Q ss_pred eEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC
Q 010672 346 RILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKS-----------QAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV 413 (504)
Q Consensus 346 ~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~-----------~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v 413 (504)
..++||+.+..+..+.+.++.. .+.+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4689999999999998888764 233333444332 2236688999999999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccC
Q 010672 414 KYVINYDFPGSLEDYVHRIGRTGRA 438 (504)
Q Consensus 414 ~~VI~~~~p~s~~~~~QriGR~gR~ 438 (504)
+.|+.++.|.....|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998775
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=96.61 E-value=0.0071 Score=56.24 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=28.9
Q ss_pred ccccEEEEcCcccccc-CCcHHHHHHHHHhcCC-CCceEEecCCCcH
Q 010672 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRP-DRQTLYWSATWPK 289 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~-~~~~i~~SAT~~~ 289 (504)
.+.++||+||+|.+.. ..+...+..++..... ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 4678999999998763 3344456666665543 3456677776543
No 244
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.56 E-value=0.071 Score=50.54 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc-cH--HHHHHHHHHHHHhcCCCCceEEEEECCCCC
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-TR--ELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P-t~--~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~ 212 (504)
+..+++++++|+|||..+..-+ ..+..+ +.++.++.. +. ..+.||....... ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~-~~l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~----------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMA-WQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKTI----GF----------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-HHHHHc-------CCeEEEEecCCCCHHHHHHHHHHhhhc----Cc-----------
Confidence 3568899999999998755422 222221 334444443 22 4555555443332 22
Q ss_pred hHhHHHHhcCCcEEE-eChHHHHHHHHccCcccccccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCc-H
Q 010672 213 GPQVRDLQKGVEIVI-ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-K 289 (504)
Q Consensus 213 ~~~~~~~~~~~~Iiv-~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~-~ 289 (504)
.+.. .++..+.+.+..- ....++++|++|-+=+.... .....+.+++....++..++.+|||.. .
T Consensus 132 -----------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 132 -----------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -----------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 2222 3455555444321 11235799999999876422 123345555555666666778999864 4
Q ss_pred HHHHHHHHhh
Q 010672 290 EVEHLARQYL 299 (504)
Q Consensus 290 ~~~~~~~~~~ 299 (504)
+..+.++.|.
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6667777664
No 245
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.55 E-value=0.0083 Score=62.84 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=31.0
Q ss_pred ccccEEEEcCccccccCC-cHHHHHHHHHhcCC-CCceEEecCCCcHHHH
Q 010672 245 RRVTYLVLDEADRMLDMG-FEPQIKKILSQIRP-DRQTLYWSATWPKEVE 292 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~~-~~~~i~~SAT~~~~~~ 292 (504)
.++++|||||+|.+.... ....+..++..+.. ..++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 457899999999886543 23445566655543 4667776666665543
No 246
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.54 E-value=0.018 Score=53.34 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
....+++.+|+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999997644
No 247
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.53 E-value=0.011 Score=63.70 Aligned_cols=78 Identities=22% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
..|++-|.+|+.. ...+++|.|..|||||.+.+ .-+.++.... ...+..+|+++.|+..|..+.+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~-~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLV-ARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHH-HHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4699999999854 33568999999999998844 3444444321 1124569999999999999998887654333
Q ss_pred CceE
Q 010672 200 KIKS 203 (504)
Q Consensus 200 ~~~~ 203 (504)
++.+
T Consensus 269 ~v~v 272 (684)
T PRK11054 269 DITA 272 (684)
T ss_pred CcEE
Confidence 3433
No 248
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.032 Score=60.08 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=73.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc-cHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P-t~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
+-+++++|||+|||++...-+....... + ..+|.++.- +--.+ ..+.++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-----G-~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv------------ 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE-----G-ADQLALLTTDSFRIG--ALEQLRIYGRILGVPV------------ 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc-----C-CCeEEEecCcccchH--HHHHHHHHHHhCCCCc------------
Confidence 3477889999999987544222221121 1 234544443 32111 1233333332222221
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcH-HHHH
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK-EVEH 293 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~-~~~~ 293 (504)
.++.+|..+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...++.+|||... .+.+
T Consensus 246 ---------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 ---------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ---------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 223466666665553 345689999988866432 1233444444445567778889998753 3455
Q ss_pred HHHHhhc----CCeEEEEcCC
Q 010672 294 LARQYLY----NPYKVIIGSP 310 (504)
Q Consensus 294 ~~~~~~~----~~~~~~~~~~ 310 (504)
++..|.. ++..+++...
T Consensus 313 i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred HHHHHhhcccCCCCEEEEecc
Confidence 6666642 3444444443
No 249
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.027 Score=53.13 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=33.6
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
++.++++.+++|+|||..+.. +...+... +.. ++.+++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~-------g~s-v~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA-------GIS-VLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc-------CCe-EEEEEHHHHHHHHHHHHhc
Confidence 677999999999999986443 44444431 344 4445566787776665543
No 250
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.46 E-value=0.015 Score=63.14 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccC
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARG 407 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~G 407 (504)
.++.++.....+.+++|.++|+.-|...++.+++ .++.+..+||+++..+|..+++.+.+|+.+|+|+| ..+...
T Consensus 299 a~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 3444455555667999999999999888777654 46889999999999999999999999999999999 456677
Q ss_pred CCCCCCCEEEE
Q 010672 408 LDVKDVKYVIN 418 (504)
Q Consensus 408 vdi~~v~~VI~ 418 (504)
+.+.++.+||.
T Consensus 379 v~~~~l~lvVI 389 (681)
T PRK10917 379 VEFHNLGLVII 389 (681)
T ss_pred chhcccceEEE
Confidence 88888888873
No 251
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.41 E-value=0.017 Score=62.59 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|++-|.+|+... ...++|.|..|||||.+... -+.++.... .-...++|+|+-|+.-|.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~-Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITN-KIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHH-HHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998653 46789999999999998443 444554321 1124569999999999999999998754
No 252
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.41 E-value=0.039 Score=56.95 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=58.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
..+++.+|+|+|||..+. ++...+.... .+.+++++.. .++..++...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~~~~~~~---------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKN-----PNAKVVYVTS-EKFTNDFVNALRN---------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHHc----------------------
Confidence 358999999999997533 3444444321 1445666644 4555444333321
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhc-CCCCceEEecCCCcHHHHH
Q 010672 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~ 293 (504)
.+.+.+.+. +..+++|||||+|.+.... ....+..++..+ ....++++.|...|..+..
T Consensus 200 -----------~~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 200 -----------NTMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred -----------CcHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 011222222 2357799999999876532 123344444443 2345566655555555443
No 253
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.40 E-value=0.021 Score=58.48 Aligned_cols=110 Identities=14% Similarity=0.225 Sum_probs=61.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
..+++.+|+|+|||.... ++...+... +.+++++.. ..+..++...+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~---------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS---------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc----------------------
Confidence 358999999999997533 344444432 455777764 3444433322211
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhc-CCCCceEEecCCCcHHHHHH
Q 010672 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL 294 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~ 294 (504)
...+.+... +..+++|++||+|.+.... ....+..++..+ ....++|+.|-+.|..+..+
T Consensus 191 -----------~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 191 -----------GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 001112111 2357899999999986532 233444555433 24456776666666665544
Q ss_pred H
Q 010672 295 A 295 (504)
Q Consensus 295 ~ 295 (504)
.
T Consensus 253 ~ 253 (445)
T PRK12422 253 E 253 (445)
T ss_pred H
Confidence 3
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.40 E-value=0.027 Score=55.71 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=25.5
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
...++||+||+|.+.... ...+..++...++...+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 456799999999885432 445666666665555555543
No 255
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.39 E-value=0.022 Score=49.73 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=30.2
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
...+++||||||.|.... ...+.++++.-+.+..+|++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 568899999999987654 566777777777677666666553
No 256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.01 Score=57.93 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.7
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
++|+.+|+|+|||..+-+
T Consensus 50 SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 50 SMILWGPPGTGKTTLARL 67 (436)
T ss_pred eeEEECCCCCCHHHHHHH
Confidence 699999999999987654
No 257
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.066 Score=52.41 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=60.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (504)
.+.++++.++||+|||..+. ++...+... +..|+++. ..+|..++... .+... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~-------g~~V~y~t-~~~l~~~l~~~--~~~~~---------------~ 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR-------GKSVIYRT-ADELIEILREI--RFNND---------------K 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC-------CCeEEEEE-HHHHHHHHHHH--Hhccc---------------h
Confidence 35789999999999997533 344444442 45566654 34565544331 11000 0
Q ss_pred hHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc-HHHHHHHHHhc-CCCCceEEecCCCcHHHH
Q 010672 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQI-RPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~-~~~~~~il~~~-~~~~~~i~~SAT~~~~~~ 292 (504)
.. ...++ .+.++++||||+++......| ...+..++... .....+|+.|--.+.++.
T Consensus 236 ~~--------------~~~~~-------~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 236 EL--------------EEVYD-------LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred hH--------------HHHHH-------HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 00 00011 134678999999987654433 33455555543 334567776666555553
No 258
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.34 E-value=0.0028 Score=55.66 Aligned_cols=123 Identities=22% Similarity=0.217 Sum_probs=53.5
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH
Q 010672 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219 (504)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 219 (504)
++.|+-|-|||.+.-+ ++..+... ...+++|.+|+.+-++.+.+.+..-....+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl-~~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGL-AAAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHH-CCCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHH-HHHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 5789999999976444 33333321 12569999999988887777665543333322200000 00000011
Q ss_pred hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 220 ~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
..+..|-+..|+.+... ....++||||||=.+. -+.+..++... ..++||.|.
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeec
Confidence 12456777777666322 2235899999999874 56677765333 366777775
No 259
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.33 E-value=0.025 Score=67.92 Aligned_cols=62 Identities=23% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHH---HHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 120 FEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYL---LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~---l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
..+++.|.+|+..++.+. -+++.+..|+|||.+.. -++...+.. .+..|+.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 478999999999998764 47778999999997631 122222222 266799999997666554
No 260
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.023 Score=55.79 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHhc--C---CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 122 PTPIQAQGWPMALK--G---RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~--~---~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
++|||...|..+.+ + +-+++.+|.|.||+..+.. +...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 37888888887764 2 2488999999999987554 4455555
No 261
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.29 E-value=0.017 Score=63.30 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.2
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
.+.+++||||+|+|.... ...|.++++.......+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999998655 345667777766666566554
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.29 E-value=0.023 Score=52.74 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=26.7
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCc-eEEecCCCcH
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ-TLYWSATWPK 289 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~-~i~~SAT~~~ 289 (504)
..++||+||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46789999999875433 4445555555443333 4667776543
No 263
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.26 E-value=0.015 Score=60.49 Aligned_cols=149 Identities=18% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 124 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 124 ~~Q~~~i~~~l~-----~----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
|+|+-.+..++- + +.+++.-|=+-|||......++..+... ...+..+++++++++-|..+.+.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 677777766651 2 3488888999999976555445454432 23367899999999999999998887
Q ss_pred hcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc--CcccccccEEEEcCccccccCCcHHHHHHHHH
Q 010672 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (504)
Q Consensus 195 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~ 272 (504)
+........... ....... ....|.....+.++..+.+. ...=.+.+++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~------~~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK------KPKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch------hhhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 654321110000 0000000 01123322222222222221 12223578999999999876432223333222
Q ss_pred hcCCCCceEEec
Q 010672 273 QIRPDRQTLYWS 284 (504)
Q Consensus 273 ~~~~~~~~i~~S 284 (504)
. +++++++..|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 2 4566666554
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.23 E-value=0.032 Score=56.69 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=34.9
Q ss_pred ccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhh
Q 010672 247 VTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 247 ~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.++||+|.+-+.... ..-..+..+.....++.-++.++||...+..+.+..+.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 378999999654321 12344556666667787888888888766656665543
No 265
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.036 Score=59.19 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=25.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..++++||||+|.|....+ ..+.++++.-+++..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999876543 34555666655555445444
No 266
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.016 Score=59.09 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=17.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhc
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
+|+++|.|+|||.++.+ +...+..
T Consensus 43 ~Lf~GP~GtGKTTlAri-LAk~Lnc 66 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI-LAKRLNC 66 (484)
T ss_pred EEEECCCCCCHHHHHHH-HHHhcCc
Confidence 79999999999988655 4444443
No 267
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.20 E-value=0.054 Score=55.62 Aligned_cols=91 Identities=23% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCH-HHHHHHHHcCCCCCcH----HHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 105 GFPD-YVMQEISKAGFFEPTP----IQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 105 ~l~~-~~~~~l~~~~~~~~~~----~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
+..+ -++..|+++.-.+++. +|.+-=..+...+ -+++++..|||||.+++--+.-.+.... ..-.+..|||
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R--~~l~~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR--GPLQAKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc--cccccCceEE
Confidence 3444 4455666665445544 4555555555443 4888899999999987653332232221 1112333999
Q ss_pred EcccHHHHHHHHHHHHHhcC
Q 010672 178 LAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~ 197 (504)
+.|.+.+..-+...+-.++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999998888777777653
No 268
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.17 Score=52.27 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=34.1
Q ss_pred hHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcCCCCceEEecCCCc-HHHHHHHHHh
Q 010672 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KEVEHLARQY 298 (504)
Q Consensus 230 ~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~~~~~~i~~SAT~~-~~~~~~~~~~ 298 (504)
+..+...+.. +.++++||||.+-+..... ...++..+.. ......+++++++.. .++.+.++.|
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHHH
Confidence 3445454443 3467899999998653211 1122333322 234455777888864 3455555554
No 269
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.18 E-value=0.03 Score=60.95 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
|++-|.+++.. ...++++.|..|||||.+.+- -+.++.... .....++|+|+.|+.-|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~-ri~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITN-KIAYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998865 346899999999999988444 444444321 1124569999999999999999988754
No 270
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.15 E-value=0.059 Score=51.19 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
.++++.+|+|+|||.++-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999987544
No 271
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.056 Score=52.71 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.7
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
....+++|+|+||.|.... ...+.++++.-+++..+|+.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3467899999999998664 56677777776666655554443
No 272
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.027 Score=58.40 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=19.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.+|+++|.|+|||.++.+ +...+..
T Consensus 45 a~Lf~Gp~G~GKTT~Ari-lAk~Lnc 69 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI-IAKAVNC 69 (507)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 599999999999988665 4444443
No 273
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.08 E-value=0.029 Score=51.03 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.2
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
++|+.+|+|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 599999999999986544
No 274
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.03 E-value=0.022 Score=57.39 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344455566667788999999999999998754
No 275
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.03 E-value=0.028 Score=60.60 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccC
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARG 407 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~G 407 (504)
.++.++.....+.+++|.++|+.-|..+++.+++ .++.+..+||+++..+|..+++...+|+.+|+|+| ..+...
T Consensus 273 a~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~ 352 (630)
T TIGR00643 273 AALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK 352 (630)
T ss_pred HHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc
Confidence 3444455555667899999999999888877764 37889999999999999999999999999999999 556677
Q ss_pred CCCCCCCEEEE
Q 010672 408 LDVKDVKYVIN 418 (504)
Q Consensus 408 vdi~~v~~VI~ 418 (504)
+++.++.+||.
T Consensus 353 ~~~~~l~lvVI 363 (630)
T TIGR00643 353 VEFKRLALVII 363 (630)
T ss_pred ccccccceEEE
Confidence 88888888773
No 276
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.02 E-value=0.067 Score=54.40 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=57.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
.+++.+++|+|||... .++...+... ..+..++++.. ..+..++...+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~~-~~~~~~~~~~~~~----------------------- 187 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVSS-EKFTNDFVNALRN----------------------- 187 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEEH-HHHHHHHHHHHHc-----------------------
Confidence 4789999999999763 3344454432 11445777653 3443333222211
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhc-CCCCceEEecCCCcHHHHH
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~ 293 (504)
+ +.+.+...+ ..+++|||||+|.+.... ....+..++..+ ....++|+.|...|..+..
T Consensus 188 ----~------~~~~~~~~~-------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 188 ----N------KMEEFKEKY-------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred ----C------CHHHHHHHH-------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 0 122232222 246799999999876542 123344444443 3445566555545554433
No 277
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.037 Score=57.61 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=26.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
.+++++||||+|.|....+ ..+.++++..++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999876553 34556666665666555544
No 278
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.98 E-value=0.096 Score=53.70 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=59.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
.+++.+|+|+|||..+. ++...+... ..+.+++++... .+..++...+.. .
T Consensus 132 ~l~lyG~~G~GKTHLl~-ai~~~l~~~-----~~~~~v~yi~~~-~f~~~~~~~~~~---~------------------- 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQ-SIGNYVVQN-----EPDLRVMYITSE-KFLNDLVDSMKE---G------------------- 182 (440)
T ss_pred eEEEEcCCCCcHHHHHH-HHHHHHHHh-----CCCCeEEEEEHH-HHHHHHHHHHhc---c-------------------
Confidence 58999999999997533 344444432 113467777643 333333322211 0
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcC-CCCceEEecCCCcHHHHHHH
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEVEHLA 295 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~-~~~~~i~~SAT~~~~~~~~~ 295 (504)
+.+.+...+. ..+++|++||+|.+.+.. ....+..++..+. ...++|+.|...|..+..+.
T Consensus 183 -----------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 183 -----------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred -----------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 0112222111 247799999999886543 2234444544432 34556665555666554443
Q ss_pred H
Q 010672 296 R 296 (504)
Q Consensus 296 ~ 296 (504)
.
T Consensus 246 ~ 246 (440)
T PRK14088 246 D 246 (440)
T ss_pred H
Confidence 3
No 279
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.98 E-value=0.078 Score=57.42 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=16.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHh
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
++|.++||+|||++... ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35899999999988433 555554
No 280
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.05 Score=58.10 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=80.3
Q ss_pred CCCCcHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 119 FFEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
......-|.+.+..++..+ -+++.|.=|=|||.+.-+.+ ..+.... ....++|.+|+.+-++.+.+.+.+-.
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 3334444444555566543 47788999999998866544 2222211 03469999999998888887766543
Q ss_pred CCCCceEEEEECCCCChHhHHHH-hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
...+.+..+...... .+... .+...|=..+|.... ..-++||+|||=.|. -+.+.+++...+
T Consensus 286 ~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~~~ 348 (758)
T COG1444 286 EFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRRFP 348 (758)
T ss_pred HHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhhcC
Confidence 333332211111100 00000 011123344443321 126899999998774 677777776653
Q ss_pred CCCceEEecCCC
Q 010672 276 PDRQTLYWSATW 287 (504)
Q Consensus 276 ~~~~~i~~SAT~ 287 (504)
.++||.|.
T Consensus 349 ----rv~~sTTI 356 (758)
T COG1444 349 ----RVLFSTTI 356 (758)
T ss_pred ----ceEEEeee
Confidence 67788885
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.14 Score=52.81 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=25.7
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+.+++||||+|.+....+ ..+.+.++..++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35788999999999876543 34555555555555445443
No 282
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.95 E-value=0.038 Score=56.76 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
.+++.|++|+|||... -++...+... ..+.+++++.+ .++..++...+..-.
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 4889999999999642 3344444331 12456776665 456555554443200
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcC-CCCceEEecCCCcHHH
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~-~~~~~i~~SAT~~~~~ 291 (504)
+.+..+.. .+.++++||+||+|.+.... ....+..++..+. ...|+|+.|-..|...
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 13467899999999876432 2344555555543 3446666666655544
No 283
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.94 E-value=0.034 Score=54.53 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=26.9
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
..++|||||+|.+........+..+++....+.++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999998433334556666777666666665443
No 284
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.056 Score=52.94 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHhcC--C---cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 122 PTPIQAQGWPMALKG--R---DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~--~---~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
++|||...|..+.+. + .+|+.+|.|+|||..+.. +...+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 378889998887642 2 488999999999987554 4444444
No 285
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.92 E-value=0.15 Score=53.74 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHh---cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 122 PTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 122 ~~~~Q~~~i~~~l---~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
|.|.-.+-|+.++ ..+-.++.+|=|.|||.+..+.+. ++... .+.+|+|.+|...-+.++.+.+.++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 4555455555443 456688889999999987554333 33321 156799999999999988888776554
No 286
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.92 E-value=0.026 Score=53.66 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=31.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCC---CCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA---PGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~---~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
.+++++++|+.|||.+.- ......+... ...-|.+++-+|...-...++..+-
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 479999999999998522 1111222111 1224677888887665555555443
No 287
>PLN03025 replication factor C subunit; Provisional
Probab=95.91 E-value=0.091 Score=51.55 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=24.5
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+++|+||+|.|.... ...+.++++...+...+++.+
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 57899999999986543 445556666554445444433
No 288
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.90 E-value=0.066 Score=49.73 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=33.0
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.+.-+++.+++|+|||+.++- ++..+.. .+.++++++.. +-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~-~~~~~~~-------~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQR-LAYGFLQ-------NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHh-------CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 456789999999999986433 3333322 14568888843 34455555555544
No 289
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.15 Score=50.47 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=64.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE-cccHHH--HHHHHHHHHHhcCCCCceEEEEECCCCC
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL-APTREL--AVQIQQESTKFGASSKIKSTCIYGGVPK 212 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil-~Pt~~L--~~q~~~~~~~~~~~~~~~~~~~~gg~~~ 212 (504)
++.+++++|+|+|||....--+. .+..+ +.++.++ +.+--. +.||.. +....++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gAveQLk~----yae~lgvpv--------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGAVEQFQG----YADKLDVEL--------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccHHHHHHH----HhhcCCCCE---------
Confidence 34578899999999987544232 23221 3344444 333211 334433 332222221
Q ss_pred hHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcH-H
Q 010672 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK-E 290 (504)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~-~ 290 (504)
.++.+|..+.+.+.... ...++++|++|=+=+.... .....+..+.....++.-++.+|||... +
T Consensus 265 ------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 265 ------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 12245666655443211 1235788999988765322 1233444555555555556677886543 4
Q ss_pred HHHHHHHh
Q 010672 291 VEHLARQY 298 (504)
Q Consensus 291 ~~~~~~~~ 298 (504)
+.+.+..|
T Consensus 332 ~~~i~~~f 339 (407)
T PRK12726 332 VMTILPKL 339 (407)
T ss_pred HHHHHHhc
Confidence 44444443
No 290
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.041 Score=54.09 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=69.4
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
.++|||...|..+. +++ -+|+.+|.|.||+..+.. +...+........ .+ |- ....|+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~~~--~~-----Cg-------~C~sC~ 66 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQGH--KS-----CG-------HCRGCQ 66 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCCCC--CC-----CC-------CCHHHH
Confidence 35788888887765 333 488999999999987544 4555555321110 00 00 112222
Q ss_pred HhcC--CCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHH
Q 010672 194 KFGA--SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (504)
Q Consensus 194 ~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il 271 (504)
.+.. ..++.. +..... +..|-|-....+.+.+.. .......+++|||+||+|.... ...+.+++
T Consensus 67 ~~~~g~HPD~~~--i~p~~~----------~~~I~idqiR~l~~~~~~-~~~~g~~kV~iI~~ae~m~~~A-aNaLLKtL 132 (334)
T PRK07993 67 LMQAGTHPDYYT--LTPEKG----------KSSLGVDAVREVTEKLYE-HARLGGAKVVWLPDAALLTDAA-ANALLKTL 132 (334)
T ss_pred HHHcCCCCCEEE--Eecccc----------cccCCHHHHHHHHHHHhh-ccccCCceEEEEcchHhhCHHH-HHHHHHHh
Confidence 2221 222221 111100 001111111122232222 2234567999999999997654 56677777
Q ss_pred HhcCCCCceEEecCC
Q 010672 272 SQIRPDRQTLYWSAT 286 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT 286 (504)
+.-++...+|++|.-
T Consensus 133 EEPp~~t~fiL~t~~ 147 (334)
T PRK07993 133 EEPPENTWFFLACRE 147 (334)
T ss_pred cCCCCCeEEEEEECC
Confidence 775555555555543
No 291
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.84 E-value=0.11 Score=52.58 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=34.6
Q ss_pred cccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhh
Q 010672 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.+++||+|=+-++... .....+..+.....|+..++.++||...+....+..|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 4677888877664322 12345555555666777788888888766666666653
No 292
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.046 Score=58.15 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=24.9
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEe
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~ 283 (504)
...+++||||+|+|.... ...+.++++.-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999987655 34455566655444444444
No 293
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.048 Score=53.51 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=27.5
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
....+++|+||||.|.... ...+.+.++.-+.+..+++.+.
T Consensus 107 ~~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 3578999999999987643 4556666665555555555544
No 294
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.78 E-value=0.096 Score=53.05 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.++++.+|+|+|||.+ +-.++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 5699999999999986 3335555543
No 295
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.72 E-value=0.033 Score=56.48 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=74.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
-.++.+..|||||.+..+.++..+... ..+.+++++.++.. |..-+...+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 367889999999999887777776663 12567999989876 55556666654433333221111111100 00
Q ss_pred HHHhcCCcEEEeCh-HHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC--CCCceEEecCCCcH
Q 010672 217 RDLQKGVEIVIATP-GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQTLYWSATWPK 289 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~-~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~--~~~~~i~~SAT~~~ 289 (504)
.....+..|++..- +...+ + .....++++.+|||..+... .+..++..++ .....+++|.+++.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 00011334555443 21111 1 11233689999999998533 4445544454 22224788888765
No 296
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.70 E-value=0.1 Score=45.11 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=40.6
Q ss_pred cccccEEEEcCccccccCCc--HHHHHHHHHhcCCCCceEEecCCCcHHHHHHHH
Q 010672 244 LRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~--~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~ 296 (504)
...+++||+||+-..++.++ ...+..+++..++..-+|+.+-..|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998776653 456677777777777888888888888877664
No 297
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.064 Score=53.62 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
...+++||||+|.+....+ ..+.+.++..++...+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4568999999999875432 23444455444455455543
No 298
>PF13173 AAA_14: AAA domain
Probab=95.67 E-value=0.1 Score=43.52 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=26.3
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.-.+|+|||+|.+.+ +...+..++... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 457899999999864 567777777755 45556554444
No 299
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.11 Score=56.79 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=26.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcH
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~ 289 (504)
.+.+++||||||+|.... ...+.++++.-+....+|+. .|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCch
Confidence 467899999999996443 34455555555555555554 44333
No 300
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.61 E-value=0.053 Score=50.67 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=37.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
+..+++.+++|+|||..++-.+...+.. +.+++|++ +.+-..|+.+.+..++-
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 4569999999999998655444444432 56688888 45666777777776653
No 301
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.069 Score=51.92 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=69.4
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~ 193 (504)
.++|||...+..+. +++ -+++.+|.|.||+..+.. +...+....... .+ |- ....+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC~~~~~---~~-----Cg-------~C~sC~ 66 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLCQNYQS---EA-----CG-------FCHSCE 66 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcCCCCCC---CC-----CC-------CCHHHH
Confidence 46788888887655 333 488999999999976544 445555432100 00 11 112222
Q ss_pred HhcC--CCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHH
Q 010672 194 KFGA--SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (504)
Q Consensus 194 ~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il 271 (504)
.+.. ..++... .... .+..|-|-....+.+.+.. .......+++|||+||+|.... ...+.+++
T Consensus 67 ~~~~g~HPD~~~i--~p~~----------~~~~I~vdqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtL 132 (319)
T PRK06090 67 LMQSGNHPDLHVI--KPEK----------EGKSITVEQIRQCNRLAQE-SSQLNGYRLFVIEPADAMNESA-SNALLKTL 132 (319)
T ss_pred HHHcCCCCCEEEE--ecCc----------CCCcCCHHHHHHHHHHHhh-CcccCCceEEEecchhhhCHHH-HHHHHHHh
Confidence 2211 2222221 1110 0001211111122222222 2234567899999999997654 56677777
Q ss_pred HhcCCCCceEEecCC
Q 010672 272 SQIRPDRQTLYWSAT 286 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT 286 (504)
+.-+++..+|+.|..
T Consensus 133 EEPp~~t~fiL~t~~ 147 (319)
T PRK06090 133 EEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCCCCeEEEEEECC
Confidence 776666555555544
No 302
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.57 E-value=0.058 Score=51.45 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHh----cCC-cEEEEccCCCchHHHHH
Q 010672 121 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~-~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+.+++..+. .+. .+++.+|+|+|||+.+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666666666543 233 48889999999998643
No 303
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.057 Score=56.92 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
..+++++||||+|.|....+ ..+.++++.-+.+..+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 34678999999999976553 345555555555565555554
No 304
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.56 E-value=0.29 Score=46.65 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=35.0
Q ss_pred ccccEEEEcCccccccC-CcHHHHHHHHHhcC------CCCceEEecCCCcHHHHHHHHHhh
Q 010672 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR------PDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~------~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.++++||+|=+-++... .....+.++..... ++-.++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45788999988775422 22345566655554 666788999997765555555544
No 305
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.55 E-value=0.17 Score=49.16 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
++.+++.+++|+|||..+. ++...+... +..++++.- .+|+.++...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~-------g~~v~~~~~-~~l~~~lk~~~~~--------------------- 205 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK-------GVSSTLLHF-PEFIRELKNSISD--------------------- 205 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc-------CCCEEEEEH-HHHHHHHHHHHhc---------------------
Confidence 4579999999999997633 344444432 444554432 2454444332210
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcH--HHHHHHHHh-cCCCCceEEecCCCcHHHH
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE--PQIKKILSQ-IRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~--~~~~~il~~-~~~~~~~i~~SAT~~~~~~ 292 (504)
.+...+++. +.++++|||||+....-..|. ..+..|+.. ......+++.|--.+.+..
T Consensus 206 ------------~~~~~~l~~-------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 206 ------------GSVKEKIDA-------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred ------------CcHHHHHHH-------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 011222222 456889999999854333333 233445443 3355667777766544443
No 306
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.16 Score=54.03 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=26.3
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+.+++||||+|.|.... ...+.++++..++...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3567899999999887544 345556666655555455444
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.53 E-value=0.12 Score=43.02 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.3
Q ss_pred EEEEccCCCchHHHHH
Q 010672 139 LIGIAETGSGKTLAYL 154 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (504)
+++.+|+|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999998643
No 308
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.52 E-value=0.05 Score=49.19 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=28.4
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
.+.+++|+||||.|.+-. ...+++..+-.....++.+...+.
T Consensus 112 grhKIiILDEADSMT~gA-QQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAGA-QQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred CceeEEEeeccchhhhHH-HHHHHHHHHHHcccchhhhhhcch
Confidence 567899999999987653 556666666655555555544443
No 309
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.14 Score=54.09 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+.+++||||+|.|.... ...+.++++..++...+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3567899999999997654 334556666655555555554
No 310
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.52 E-value=0.063 Score=59.86 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=68.2
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCC
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVK 411 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gvdi~ 411 (504)
.+.....+.+++|.++|+.-|...++.+++. ++.+..+++..+..++..+++.+.+|+.+|+|+| ..+...+.+.
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 3444445678999999999999988887653 5677889999999999999999999999999999 5666778888
Q ss_pred CCCEEEE
Q 010672 412 DVKYVIN 418 (504)
Q Consensus 412 ~v~~VI~ 418 (504)
++.+||.
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 8888773
No 311
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.52 E-value=0.11 Score=48.27 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=31.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|..+++.+++|+|||..++..+...+.. +..+++++. .+...++.+.+..++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 35668999999999997654433333322 445777764 334455555555543
No 312
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.51 E-value=0.049 Score=52.98 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=43.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 113 EISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 113 ~l~~~~~~~~~~~Q~~~i~~~l-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
.+...+. +++.|.+.+..+. .+.+++++++||||||.. +-+++..+...+ ...+++.+-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 3444444 5677887776654 567899999999999975 444555554321 134688888888873
No 313
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.50 E-value=0.055 Score=62.78 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCc
Q 010672 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (504)
Q Consensus 122 ~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~ 201 (504)
+|+-|.++|. ..++++++.|..|||||.+.+--++..+... ..-.++|+|+=|+.-|.++.+.+.+-.... +
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 5888999997 3578999999999999998655555555432 112459999999999998888777532110 0
Q ss_pred eEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccc--cccEEEEcCccc
Q 010672 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADR 257 (504)
Q Consensus 202 ~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~--~~~~lV~DEah~ 257 (504)
. .........+.+..-...-|+|...|...+.+.....- +..+=|.||...
T Consensus 74 ~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 00011111122222345789999888755544332211 224556888774
No 314
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.072 Score=56.71 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=26.0
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+.+++||||+|.|.... ...+.++++..+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999876543 234555666555556555544
No 315
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.078 Score=55.60 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.2
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+.+++||||+|.|....+ ..+.+.++..++...+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999999876543 34555555555555555554
No 316
>CHL00181 cbbX CbbX; Provisional
Probab=95.50 E-value=0.19 Score=48.34 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
+.++++.+|+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 44689999999999987654
No 317
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.48 E-value=0.044 Score=52.38 Aligned_cols=41 Identities=29% Similarity=0.182 Sum_probs=26.1
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
+..+.-+++.|++|+|||...+-.+...+.. .+..|+|++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc
Confidence 3445678999999999997644433333222 1556878764
No 318
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.46 E-value=0.1 Score=53.21 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+|+|+|||..+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998644
No 319
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.44 E-value=0.055 Score=49.86 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=60.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
.+++.+|+|+|||-. +-++...+... ..+.+|+++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-----~~~~~v~y~~~~-~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-----HPGKRVVYLSAE-EFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-----CTTS-EEEEEHH-HHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-----cccccceeecHH-HHHHHHHHHHHc-----------------------
Confidence 389999999999974 34444444432 114557776653 443333333222
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcC-CCCceEEecCCCcHHH
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~-~~~~~i~~SAT~~~~~ 291 (504)
...+.+.+. +...++|+||++|.+.... +...+..++..+. ...++|+.|...|..+
T Consensus 86 ----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111222222 3468899999999987542 3445555555543 4567777776766644
No 320
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.42 E-value=0.079 Score=54.37 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=55.7
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 010672 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (504)
Q Consensus 129 ~i~~~l~-----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~ 203 (504)
.++.++. +.-+++.+++|+|||+..+- ++..+.. .+.+++|+.- .+-..|+...+.+++....
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~-------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~--- 135 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQ-VAARLAA-------AGGKVLYVSG-EESASQIKLRAERLGLPSD--- 135 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHH-HHHHHHh-------cCCeEEEEEc-cccHHHHHHHHHHcCCChh---
Confidence 3445554 34588899999999976443 3333322 1456888875 4556677777766643211
Q ss_pred EEEECCCCChHhHHHHhcCCcEEEe---ChHHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 204 TCIYGGVPKGPQVRDLQKGVEIVIA---TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~---T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
++.+. ..+.+...+.. .+.++||+|+++.+..
T Consensus 136 --------------------~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 --------------------NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred --------------------cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 01121 22334444432 2568999999997754
No 321
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.41 E-value=0.14 Score=55.46 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 326 SESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 326 ~~~~k~~~l~~~l~~-~~~~~~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
+...|....+..+.. +..+.++||.++++..+..+.+.|++. +..+..+||+++..+|...+.+..+|+.+|+|+|..
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 334455554444433 234568999999999999999999764 778999999999999999999999999999999963
Q ss_pred cccCCCCCCCCEEEEcC
Q 010672 404 AARGLDVKDVKYVINYD 420 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~ 420 (504)
+.. +.+.++.+||.-+
T Consensus 251 al~-~p~~~l~liVvDE 266 (679)
T PRK05580 251 ALF-LPFKNLGLIIVDE 266 (679)
T ss_pred Hhc-ccccCCCEEEEEC
Confidence 322 5566788777543
No 322
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.029 Score=59.18 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=25.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.+.+++||||+|+|.... ...+.++++..++...+|+ .+|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 457899999999887554 3445556665555554454 444
No 323
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.35 E-value=0.16 Score=52.24 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
+-+++++|||+|||++...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 3477889999999987544
No 324
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.088 Score=55.04 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=26.3
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
....+++||||+|+|.... ...+.+.++..++...+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987654 345556666555555555544
No 325
>PTZ00293 thymidine kinase; Provisional
Probab=95.29 E-value=0.12 Score=46.77 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=24.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
.=.++.+|++||||.-.+-.+..+... +.+++++-|..
T Consensus 5 ~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~~ 42 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYSK 42 (211)
T ss_pred EEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEecc
Confidence 335788999999997633333333222 56688888863
No 326
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.085 Score=53.06 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=28.4
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHH
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEV 291 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~ 291 (504)
....+++||||+|+|.... ...+.++++.-++.. ++++++|-+..+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 3467899999999996543 345556666554444 444555534433
No 327
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.29 E-value=0.048 Score=52.54 Aligned_cols=61 Identities=25% Similarity=0.159 Sum_probs=44.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 117 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
..|..+++-|...+..+...+ ++|+++.||||||+. +-+++..+.. .-++|.+-.|.||-.
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~--------~eRvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS--------DERVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC--------cccEEEEeehhhhcc
Confidence 356688999999998887766 999999999999974 2222222211 337999999988843
No 328
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.27 E-value=0.1 Score=55.41 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=27.3
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
....+++||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999987544 344555566665666566654
No 329
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.26 E-value=0.094 Score=57.64 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
..|+|-|.+++... ...++|.|..|||||.+.+- -+.++..... -...++|+++-|+.-|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~-ria~Li~~~~---i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTH-RIAHLIAEKN---VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHH-HHHHHHHcCC---CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999998753 46799999999999988443 4445543211 1234699999999999999999887643
No 330
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.24 E-value=0.093 Score=46.65 Aligned_cols=146 Identities=18% Similarity=0.094 Sum_probs=74.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (504)
....+++..++|.|||.+++--++..+.. +.+|+++-=.+--. -.-+...+....++.....-.+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCcccC
Confidence 44578889999999999987766666554 66677764322110 011111111111222221111100000
Q ss_pred hHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc--HHHHHHHHHhcCCCCceEEecCCCcHHHH
Q 010672 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~--~~~~~~il~~~~~~~~~i~~SAT~~~~~~ 292 (504)
...+--+......++.... ...-..+++||+||+-..++.++ ...+..++...++..-+|+.--..|+++.
T Consensus 91 ------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 91 ------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred ------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 0000000011111111111 12235689999999998888774 34566666666566666766666788777
Q ss_pred HHHHH
Q 010672 293 HLARQ 297 (504)
Q Consensus 293 ~~~~~ 297 (504)
+.+..
T Consensus 164 e~ADl 168 (191)
T PRK05986 164 EAADL 168 (191)
T ss_pred HhCch
Confidence 76654
No 331
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.15 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=18.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.+|+++|.|+|||.++.+ +...+..
T Consensus 40 a~lf~Gp~G~GKtt~A~~-~a~~l~c 64 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV-FAKAVNC 64 (397)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 388999999999988665 4444444
No 332
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.095 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=17.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.+|+.+|.|+|||.++.+ +...+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~-lA~~l~ 63 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI-LAKAVN 63 (585)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 368999999999987654 444544
No 333
>PRK05973 replicative DNA helicase; Provisional
Probab=95.19 E-value=0.18 Score=46.70 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=36.3
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+..|.-+++.|++|+|||..++-.+...+.. +.+++|++-- +-..|+.+.+..++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 4445668999999999998755544444332 5568887643 33567777777664
No 334
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.12 Score=54.62 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=18.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.+|+.+|.|+|||.++.+ +...+.
T Consensus 40 a~Lf~GPpG~GKTtiAri-lAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI-FAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHH-HHHhcc
Confidence 488899999999998665 334444
No 335
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.17 E-value=0.12 Score=53.88 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010672 328 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (504)
Q Consensus 328 ~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (504)
..|-...+..+... ..++++||.++++..+..+++.|++. +..+..+|++++..+|..++.+..+|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 34444444444433 34568999999999999999999764 67789999999999999999999999999999995432
Q ss_pred cCCCCCCCCEEEEc
Q 010672 406 RGLDVKDVKYVINY 419 (504)
Q Consensus 406 ~Gvdi~~v~~VI~~ 419 (504)
. ..++++.+||.-
T Consensus 88 f-~p~~~l~lIIVD 100 (505)
T TIGR00595 88 F-LPFKNLGLIIVD 100 (505)
T ss_pred c-CcccCCCEEEEE
Confidence 2 356677777743
No 336
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.35 Score=48.83 Aligned_cols=132 Identities=19% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
+.-+.+++|||+|||+....-+-..+... +.....++.+.+--.+ ..+.+..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~----------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVR----------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCcee-----------
Confidence 34588889999999986443222222211 1122345555553222 22223333333333221
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcH-HHHH
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK-EVEH 293 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~-~~~~ 293 (504)
.+.++..+...+. .+.+.+++++|.+=+.... .....+..+.....+...++.+|||... .+.+
T Consensus 253 ----------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 2223333333222 2456788999986432211 1122333332223345567889999744 4555
Q ss_pred HHHHhh
Q 010672 294 LARQYL 299 (504)
Q Consensus 294 ~~~~~~ 299 (504)
....|-
T Consensus 319 ~~~~f~ 324 (420)
T PRK14721 319 VISAYQ 324 (420)
T ss_pred HHHHhc
Confidence 555553
No 337
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.35 Score=48.60 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=31.7
Q ss_pred ccccEEEEcCccccccC-CcHHHHHHHHHhcC---CCCceEEecCCCcH-HHHHHHHHh
Q 010672 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIR---PDRQTLYWSATWPK-EVEHLARQY 298 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~-~~~~~~~~il~~~~---~~~~~i~~SAT~~~-~~~~~~~~~ 298 (504)
..+++||+|=+-+.... .-...+..++.... +...++.+|||... .+.+.+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 35789999977654321 12233444444432 33467888999876 555565555
No 338
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.13 E-value=0.12 Score=54.04 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEEeCCcccH----HHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-
Q 010672 327 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGC----DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT- 401 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~----~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT- 401 (504)
...-+..++..+..+..+.++..-++|.--| +.+.+.|...|+.+..+.|.+....|.++++...+|+++++|.|
T Consensus 294 SGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH 373 (677)
T COG1200 294 SGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH 373 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc
Confidence 3445566677777777888999999996554 55555566678999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEE
Q 010672 402 DVAARGLDVKDVKYVI 417 (504)
Q Consensus 402 ~~~~~Gvdi~~v~~VI 417 (504)
..+...|++.++-.||
T Consensus 374 ALiQd~V~F~~LgLVI 389 (677)
T COG1200 374 ALIQDKVEFHNLGLVI 389 (677)
T ss_pred hhhhcceeecceeEEE
Confidence 6778999999988887
No 339
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=0.16 Score=50.60 Aligned_cols=134 Identities=17% Similarity=0.123 Sum_probs=63.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC---CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEE-CCCCCh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY-GGVPKG 213 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~---~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-gg~~~~ 213 (504)
-+|+.+|.|+||+..+.. +...++........ ..+..+-+++.-.-+.+ +.. +...++..+.-. .+...
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~----i~~-~~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR----IAA-GAHGGLLTLERSWNEKGK- 115 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCCccccccccccCCCCChHHHH----HHc-cCCCCeEEEecccccccc-
Confidence 488999999999977543 55666654311111 01223333443222221 211 122233322110 01000
Q ss_pred HhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 214 ~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.....|.|-..-.+.+++.. ........++||||+|.|.... ...+.++++..++...+|++|..
T Consensus 116 ------~~~~~I~VdqiR~l~~~~~~-~~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 116 ------RLRTVITVDEVRELISFFGL-TAAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ------cccccccHHHHHHHHHHhCc-CcccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 00123433333333333332 2234567899999999986443 44555666665555555555544
No 340
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.11 E-value=0.064 Score=49.70 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
+..+++.+++|+|||.-++-.+...+.+. +.++++++- .+-..++.+.+..++...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g~d~---------------- 74 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFGWDL---------------- 74 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTTS-H----------------
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcCCcH----------------
Confidence 45699999999999976554455554430 344788774 345566777777664221
Q ss_pred HHHHhcCCcEEE------------eChHHHHHHHHccCcccccccEEEEcCccccccCC----cHHHHHHHHHhcCCCCc
Q 010672 216 VRDLQKGVEIVI------------ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG----FEPQIKKILSQIRPDRQ 279 (504)
Q Consensus 216 ~~~~~~~~~Iiv------------~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~----~~~~~~~il~~~~~~~~ 279 (504)
........+.+ ..++.+...+...... .+.+.+|+|-...+.... +...+..+...++....
T Consensus 75 -~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~ 152 (226)
T PF06745_consen 75 -EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGV 152 (226)
T ss_dssp -HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTE
T ss_pred -HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 11111111111 2334444433321111 123799999999872221 34455566666655555
Q ss_pred eEEecCC
Q 010672 280 TLYWSAT 286 (504)
Q Consensus 280 ~i~~SAT 286 (504)
+.++++.
T Consensus 153 t~llt~~ 159 (226)
T PF06745_consen 153 TTLLTSE 159 (226)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 6666655
No 341
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.11 E-value=0.11 Score=45.40 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=39.4
Q ss_pred ccccEEEEcCccccccCCc--HHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHH
Q 010672 245 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~--~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~ 297 (504)
..+++||+||+-..++.++ ...+..++...++...+|+..-..|+.+.+.+..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 5689999999998777763 3456667777666777777777788877776653
No 342
>PHA00729 NTP-binding motif containing protein
Probab=95.11 E-value=0.17 Score=46.32 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=40.5
Q ss_pred cEEEeChHHHHHHHHccCcccccccEEEEcCccccccC-CcH----HHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHh
Q 010672 224 EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFE----PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (504)
Q Consensus 224 ~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~-~~~----~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~ 298 (504)
..++.+.+.|.+.+.........+++||+||+-.-... .|. .....+...++...+++.+...-|.++...++.-
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 45566666666655432222235678999994321111 111 1222344444445566777777677777766664
Q ss_pred hc
Q 010672 299 LY 300 (504)
Q Consensus 299 ~~ 300 (504)
..
T Consensus 140 g~ 141 (226)
T PHA00729 140 GW 141 (226)
T ss_pred CC
Confidence 33
No 343
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.08 E-value=0.1 Score=54.69 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=77.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC--CceEEEEECCCCChH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGP 214 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~gg~~~~~ 214 (504)
+-.++..|=-.|||.... +++..+... -.+.++++.+|.+..++.+.+++..+.... .-.+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 458888999999998644 555544421 127789999999999999999888754321 111212222 110
Q ss_pred hHHHHhcC--CcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCCCceEEecCC
Q 010672 215 QVRDLQKG--VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 286 (504)
Q Consensus 215 ~~~~~~~~--~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT 286 (504)
.....++ ..|.++|. -..+...=..+++||+|||+-+.+.. +..++-.+ ..++++|++|.|
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccEEEEecC
Confidence 0011112 24555531 01112223468999999999887544 33443222 348889999987
No 344
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.055 Score=47.77 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=51.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (504)
.++.+|+.||||...+- .+..... .+.++++..|...- ++ +...+.-.-|..
T Consensus 7 ~~i~gpM~SGKT~eLl~-r~~~~~~-------~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLR-RARRYKE-------AGMKVLVFKPAIDT---------RY----GVGKVSSRIGLS------- 58 (201)
T ss_pred EEEEccCcCcchHHHHH-HHHHHHH-------cCCeEEEEeccccc---------cc----ccceeeeccCCc-------
Confidence 67889999999986333 3333222 26678888885311 11 111111111211
Q ss_pred HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
..-++|-.+..+.+.+....... .+++|.+|||+=+.
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 12466667777777777644333 28899999999654
No 345
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.19 Score=53.19 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=24.6
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~ 288 (504)
....+++||||+|.|....+ ..+.+.++..++.. ++++.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~-naLLKtLEepp~~~-ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAF-NALLKTLEEPPAHV-IFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHhcCCCCCe-EEEEEeCCh
Confidence 45678999999999865443 23444444433333 333344533
No 346
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.00 E-value=0.18 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.++++.+|+|+|||.+. -.++.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999763 33555554
No 347
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.00 E-value=0.16 Score=50.73 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=54.3
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 010672 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (504)
Q Consensus 129 ~i~~~l~-----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~ 203 (504)
.++.++. +.-+++.+++|+|||...+. +...+... +.+++|+.-. +-..|+...+.+++.... .
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq-~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~--~ 138 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ-VAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLGISTE--N 138 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcCCCcc--c
Confidence 3445554 34588889999999986443 33333221 4568888754 445667666666542210 0
Q ss_pred EEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 204 ~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
..+.. -...+.+.+.+.. .+.++||||+++.+.
T Consensus 139 l~l~~------------------e~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 LYLLA------------------ETNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred EEEEc------------------cCcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 00110 0122344444432 256899999999875
No 348
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.99 E-value=0.069 Score=52.97 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.+.-+++++|||||||+. +-.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 445699999999999986 3445555543
No 349
>PRK04195 replication factor C large subunit; Provisional
Probab=94.97 E-value=0.24 Score=51.64 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+|+.+|+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999997643
No 350
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.92 E-value=0.073 Score=51.92 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=43.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH-hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 111 MQEISKAGFFEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~~-l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
++.+.+.|+ +++.|.+.+..+ ..+++++++++||||||.. +-+++..+...+ ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 344544554 457788877654 4567899999999999964 444555443211 24568888888776
No 351
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.91 E-value=0.05 Score=57.41 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~ 190 (504)
..+|+|.+..+.+... +.++++.++-+|||.+.+. ++-+.... +...+|++.||.++|..+.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQ------DPGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEe------CCCCEEEEEEcHHHHHHHHH
Confidence 5689999999887754 4688999999999996444 44343332 13349999999999998873
No 352
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.099 Score=55.47 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=25.6
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~ 288 (504)
..++++||||+|.|....|. .+.+.++..+....+|+.+ |-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T-td~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT-TDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE-CCc
Confidence 46889999999998765433 3444455444444444443 533
No 353
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.22 Score=49.37 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=27.6
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
.....++||||||.|.... ...+.++++..+....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 3467899999999986544 3456666666555555566553
No 354
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.039 Score=54.36 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
...|+|+.+|||||||+.+. -|..+++
T Consensus 225 eKSNvLllGPtGsGKTllaq--TLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ--TLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHHHH--HHHHHhC
Confidence 34579999999999998543 4555554
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.86 E-value=0.96 Score=39.76 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=29.6
Q ss_pred cccEEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHh
Q 010672 246 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (504)
Q Consensus 246 ~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~ 298 (504)
..+++|+|....+.. ......+..+.....++.-++.++|.-+....+.+..+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 567899999887532 11223333333333455566677776555555555444
No 356
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.85 E-value=0.09 Score=49.24 Aligned_cols=39 Identities=31% Similarity=0.175 Sum_probs=25.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
.|.-+++.|++|+|||...+--++..+... +..+++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 345688999999999976444333333321 455888873
No 357
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.85 E-value=0.13 Score=49.45 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
+.++++.+|+|+|||+++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45799999999999987643
No 358
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.24 Score=52.80 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=24.8
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
..+.+++||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999987543 234445555544444444444
No 359
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.80 E-value=0.11 Score=50.37 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=42.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 111 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
++.+.+.|. +++-|.+.+..+. .+.+++++++||||||.. +-+++..+... ....+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-----CCCceEEEECCchhhc
Confidence 344444443 4455666665544 567899999999999975 34455444331 1145688888888873
No 360
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.11 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=18.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhc
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
+|+.+|+|+|||.++.+ +...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~c 62 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVNC 62 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHhc
Confidence 59999999999988654 4555543
No 361
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.17 Score=50.55 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=33.9
Q ss_pred cccEEEEcCccccccC-CcHHHHHHHHHhcCC-CCceEEecCCCcHHHHH
Q 010672 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRP-DRQTLYWSATWPKEVEH 293 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~-~~~~i~~SAT~~~~~~~ 293 (504)
+++++++|.++.+... .....+..++..+.. ..|+++.|..+|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 6789999999988765 345555666666543 34788888888876653
No 362
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.35 Score=48.17 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=19.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.++++.++||+|||.+.-. ++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 3699999999999987433 5555554
No 363
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.72 E-value=0.06 Score=54.57 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHhcCCc--EEEEccCCCchHHHHHHHHHHHHhc
Q 010672 123 TPIQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~~--~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.+.|.+.+..+++... +|+.+|||||||++ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 7888888888877654 77779999999987 5667777655
No 364
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.70 E-value=0.15 Score=55.46 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=25.7
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHH
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~ 292 (504)
...+|||||+|++... +...++..+ ...++++.++|-++...
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCChHh
Confidence 4568999999997532 223333333 34567787877554433
No 365
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.69 E-value=0.26 Score=53.03 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-C-CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 327 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~-~-~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
.+.|.+..+.++.+.. .++.+||.++....+..+.+.|+.. + ..+..+|++++..+|...+.+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 3467777777777654 4668999999999999999999865 3 56899999999999999999999999999999954
Q ss_pred cccCCCCCCCCEEEEcC
Q 010672 404 AARGLDVKDVKYVINYD 420 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~ 420 (504)
+.- .-++++..||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 321 3455667766443
No 366
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.68 E-value=0.43 Score=46.65 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=25.6
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
...+|++||+|.+.... ...+..++....+...+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEeC
Confidence 45799999999886432 3456666666656666665543
No 367
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.68 E-value=0.17 Score=53.24 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=23.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
...+++|+||||.|.... ...+.+.++..++...+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 356789999999986443 234555555544444444444
No 368
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.68 E-value=0.1 Score=51.98 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
...+++++|||||||+. +-.++.++...+ ...+++.+-...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~-----~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY-----PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC-----CCceEEEEecCchh
Confidence 34588999999999975 455666665421 12346666555454
No 369
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.67 E-value=0.32 Score=45.29 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+.-+++.+++|+|||..+...+...+.. +.+++|+.--. -..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 3458888999999997654433333322 56677777643 3456666666654
No 370
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.19 Score=53.76 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
..+|+.+|.|+|||.++.. +...+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~-lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI-LAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHH-HHHHhcC
Confidence 3579999999999987654 4445544
No 371
>PRK10867 signal recognition particle protein; Provisional
Probab=94.65 E-value=0.4 Score=48.70 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.2
Q ss_pred EEEEccCCCchHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLL 155 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (504)
+++++++|+|||++..-
T Consensus 103 I~~vG~~GsGKTTtaak 119 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 77889999999987554
No 372
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.48 E-value=0.86 Score=45.31 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=30.0
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhc-CCCCceEEecCCCcHHH
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEV 291 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~ 291 (504)
...+|.|||+|. .|.+-...+..++..+ ....-+|+.|.+.|.++
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 456899999994 2333244455555543 56677888899988764
No 373
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.45 E-value=0.64 Score=51.14 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
.++++.+|+|+|||..+-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999987443
No 374
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.42 E-value=0.33 Score=53.05 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
..++|+.+|+|+|||..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999986443
No 375
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.41 E-value=0.41 Score=48.61 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=28.5
Q ss_pred cccEEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhh
Q 010672 246 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 246 ~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.+++||+|=+-++.. ......+..+...+.++--++.++|+...+..+.+..+.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 356677776665432 112233444444455555566667766655555555543
No 376
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.35 E-value=0.19 Score=57.52 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCCE
Q 010672 341 IMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVKY 415 (504)
Q Consensus 341 ~~~~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gvdi~~v~~ 415 (504)
...+.+++|.|+|+.-|..+++.+++. ++.+..+++..+..++..+++.+++|..+|+|+| ..+...+++.++.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 345678999999999999998888753 4567789999999999999999999999999999 55666677778887
Q ss_pred EE
Q 010672 416 VI 417 (504)
Q Consensus 416 VI 417 (504)
||
T Consensus 726 LV 727 (1147)
T PRK10689 726 LI 727 (1147)
T ss_pred EE
Confidence 77
No 377
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.27 E-value=0.13 Score=50.48 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=30.1
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
+..+.+++++++||||||.. +-+++.++.. ..+++.+=.+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCccc
Confidence 34678999999999999974 4445544432 35577776666663
No 378
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.26 E-value=0.25 Score=50.74 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=82.6
Q ss_pred CCcHHHHHHHHHHhc------C----CcEEEEccCCCchHHHHH-HHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLAYL-LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~------~----~~~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 189 (504)
.+-|||.-.+..++- + +..++..|=+-|||..+. +.....+... ..+..+.|++|+.+-+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 568999999988772 1 248888999999997544 2222222221 33677999999999998888
Q ss_pred HHHHHhcCCCC-ceEEEEECCCCChHhHHHHhcCCcEEEeChHH---HHHHHHc--cCcccccccEEEEcCccccccCCc
Q 010672 190 QESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR---LIDMLES--HNTNLRRVTYLVLDEADRMLDMGF 263 (504)
Q Consensus 190 ~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~---l~~~l~~--~~~~l~~~~~lV~DEah~~~~~~~ 263 (504)
..++....... +... .....+-...+... .+..+.. ...+-.+..+.|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l~~~--------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 136 NPARDMVKRDDDLRDL--------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HHHHHHHHhCcchhhh--------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 87776443321 1100 00011111111111 1122222 22234467899999999876542
Q ss_pred HHHHHHHHHhc--CCCCceEEecC
Q 010672 264 EPQIKKILSQI--RPDRQTLYWSA 285 (504)
Q Consensus 264 ~~~~~~il~~~--~~~~~~i~~SA 285 (504)
..+..+..-+ +++.+++..|-
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEec
Confidence 4444444443 46777776665
No 379
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.23 E-value=0.12 Score=48.89 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=24.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
.++-+||||||+- ++..++...... .....|++++|++..
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~-P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQ-PPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCccc-CCCCceEEECCCCCC
Confidence 5567999999995 344443322211 124459999998643
No 380
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.22 E-value=0.31 Score=43.62 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=23.8
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEe
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~ 283 (504)
.....++||||+|.+.... ...+.+.++..++...+|++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 3567899999999986543 33445555554444444443
No 381
>PRK04328 hypothetical protein; Provisional
Probab=94.13 E-value=0.37 Score=45.33 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=35.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
+.-+++.+++|+|||..++-.+...+.. +.+++|++ +.+-..++.+.+..|+-
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 4568899999999997655434444333 45577777 44556667777776653
No 382
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.19 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=17.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHh
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
+|+++|+|+|||..+.+ +...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~-lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI-LAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhc
Confidence 78999999999987654 333433
No 383
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.07 E-value=0.29 Score=51.03 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=27.4
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
....+++||||||.|.... ...+.++++..++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999987544 345566666665566555554
No 384
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.05 E-value=0.6 Score=40.89 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=62.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
+.+--..|=|||.+++=-++..+-. +.+|+++-=.+. -..-=...++++. ++.....-.+........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccccCCCc
Confidence 4445668899999988767766544 777888865444 1111112223321 122221111110100000
Q ss_pred HHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc--HHHHHHHHHhcCCCCceEEecCCCcHHHHHHH
Q 010672 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLA 295 (504)
Q Consensus 218 ~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~--~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~ 295 (504)
. .+ .......++.... ...-..+++||+||+-..++.++ ...+..++..-++..-+|+.--.+|+.+.+.+
T Consensus 75 ~----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 75 E----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp H----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred H----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 0 00 0111111122111 22235789999999998887774 34566667766666767776677777777665
Q ss_pred H
Q 010672 296 R 296 (504)
Q Consensus 296 ~ 296 (504)
.
T Consensus 148 D 148 (172)
T PF02572_consen 148 D 148 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 385
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.26 Score=50.03 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCCCcCCcccCC---CCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHH
Q 010672 94 VPKPVKSFRDVG---FPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 94 ~p~~~~~f~~~~---l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~ 153 (504)
+-.|-..|++++ |..+.-+-+..+ ..+.|--+-+-.++ .=+.+|+-+|+|+|||+.+
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHHH
Confidence 345667778774 566655544322 11111111111111 2256999999999999864
No 386
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.95 E-value=0.21 Score=46.30 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=24.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
+++++|++|||||.. ++-++..+... -..+++++|
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhccc-------CCEEEEEec
Confidence 689999999999964 55566554432 244666667
No 387
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.95 E-value=0.17 Score=50.06 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
+..+++++|||||||+. +-.++.++... ...+++.+-...|+
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45689999999999986 33355544321 13456766665554
No 388
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.91 E-value=0.054 Score=57.07 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=59.1
Q ss_pred HHHhcCCCcEEEEccccccCCCCCCCCE--------EEEcCCCCCHhHHHHHhcccccCCCc-ceEEEEecc---ccHHH
Q 010672 388 SEFKAGKSPIMTATDVAARGLDVKDVKY--------VINYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTA---ANARF 455 (504)
Q Consensus 388 ~~f~~g~~~vLVaT~~~~~Gvdi~~v~~--------VI~~~~p~s~~~~~QriGR~gR~g~~-g~~~~~~~~---~~~~~ 455 (504)
++|.+|+..|-|-..+++.||.+..-+. -|-..+|||.+.-+|..||+.|..+- +--|+|+-. .+.++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 3577788888888899999999875443 35678999999999999999998764 455555543 36677
Q ss_pred HHHHHHHHHHhC
Q 010672 456 AKELITILEEAG 467 (504)
Q Consensus 456 ~~~l~~~l~~~~ 467 (504)
+..+.+.|+..+
T Consensus 931 AS~VAKRLESLG 942 (1300)
T KOG1513|consen 931 ASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHhhc
Confidence 766666666543
No 389
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.2 Score=53.87 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=77.3
Q ss_pred eeeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010672 321 HVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (504)
Q Consensus 321 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vL 398 (504)
.+..++.+.|.+..++++.+.. .++.+||.++.+.....+.+.|+.. +.++..+|+++++.+|...+.+..+|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 3556677888888888887754 4568999999999999888888764 7889999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEE
Q 010672 399 TATDVAARGLDVKDVKYVI 417 (504)
Q Consensus 399 VaT~~~~~Gvdi~~v~~VI 417 (504)
|.|..+- =.-++++-.||
T Consensus 301 IGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 301 IGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred EEechhh-cCchhhccEEE
Confidence 9994321 13344666665
No 390
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.89 E-value=0.2 Score=46.93 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.1
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
++++.+|+|.|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 599999999999976544
No 391
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.86 E-value=0.2 Score=48.50 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.0
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
.+|+++|+|+|||..+-+
T Consensus 164 SmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARL 181 (554)
T ss_pred ceEEecCCCCchHHHHHH
Confidence 599999999999975443
No 392
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.38 Score=46.93 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=35.9
Q ss_pred EEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 225 Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
|-|-....+.+.+..... ....+++|||+||.|.... ...+.++++..+ +..+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 333343445555554333 3578999999999987554 456667777665 5545555543
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.82 E-value=0.78 Score=49.48 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=37.8
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~ 288 (504)
+.-++|+|+-|++.+......++.+++..+++...++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999999888899999999999999999987754
No 394
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.78 E-value=0.17 Score=47.16 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=72.0
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCC----CcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcc-cccCCCcc
Q 010672 368 GWPALSIHGDKSQAERDWVLSEFKAGK----SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGR-TGRAGAKG 442 (504)
Q Consensus 368 ~~~~~~ih~~~~~~~r~~~~~~f~~g~----~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR-~gR~g~~g 442 (504)
++.+..++++.+... -.|.++. ..|+|.=+.++||+.++++.+..+...+.+.+++.||.== .-|.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466677776554432 2344433 6788899999999999999999999999999999998422 22566677
Q ss_pred eEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHhhcC
Q 010672 443 TAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRG 480 (504)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~ 480 (504)
.|-+++++.-...... +.+...++.++|.+|+..
T Consensus 185 l~Ri~~~~~l~~~f~~----i~~~~e~lr~~i~~~~~~ 218 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRH----IAEAEEELREEIKEMANN 218 (239)
T ss_pred ceEEecCHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 8888887664444433 444455567777777643
No 395
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.77 E-value=0.48 Score=44.87 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKF 195 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt---~~L~~q~~~~~~~~ 195 (504)
+.-+++.+++|+|||..++-.+...+.. +.+++|++-- ..+..++......+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 4568999999999997655433333322 5568887732 33333444444444
No 396
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.75 E-value=1.3 Score=45.28 Aligned_cols=37 Identities=27% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
|.=+++.|+||+|||..++-.+......+ +..|+|++
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFS 230 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEE
Confidence 34478889999999976554333332221 44577776
No 397
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.73 E-value=0.043 Score=48.59 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=30.5
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcc--cccccEEEEcCccccccC
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTN--LRRVTYLVLDEADRMLDM 261 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~--l~~~~~lV~DEah~~~~~ 261 (504)
.+.....++|||+++..|++-....... ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 4455667899999999887654332221 234478999999998653
No 398
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.71 E-value=1.3 Score=42.79 Aligned_cols=129 Identities=21% Similarity=0.298 Sum_probs=70.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc--HHHHHHHHHHHHHhcCCCCceEEEE-ECCCCChHh
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT--RELAVQIQQESTKFGASSKIKSTCI-YGGVPKGPQ 215 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt--~~L~~q~~~~~~~~~~~~~~~~~~~-~gg~~~~~~ 215 (504)
+++++-.|+|||++.. -+..++.. .+.+|++.+-- |+=|. ++++.++...++.++.- +|+.+..
T Consensus 142 il~vGVNG~GKTTTIa-KLA~~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa-- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIA-KLAKYLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA-- 208 (340)
T ss_pred EEEEecCCCchHhHHH-HHHHHHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH--
Confidence 7778999999998732 23333333 26667776653 33332 33333333344444431 2221111
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCC-cHHHHHHHHHhcCCCC------ceEEecCCCc
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDR------QTLYWSATWP 288 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~~~~~------~~i~~SAT~~ 288 (504)
| ..+-++... -+.+++|++|=|-||.... .-..+++|.+-+.+.. -++.+-||..
T Consensus 209 ---------V-------afDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 209 ---------V-------AFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ---------H-------HHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 0 122222211 2467888888888876543 4566777777666544 3444589987
Q ss_pred HHHHHHHHHh
Q 010672 289 KEVEHLARQY 298 (504)
Q Consensus 289 ~~~~~~~~~~ 298 (504)
.+-..-++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 7766655555
No 399
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.66 E-value=0.16 Score=45.13 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=28.1
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
+..++++++.+++|+|||..+.. +...+... +..++++ +..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEe-ecCceeccc
Confidence 44578899999999999987544 44444442 4556665 445665554
No 400
>PHA00012 I assembly protein
Probab=93.59 E-value=2.3 Score=41.07 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhc
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.++.+..|+|||+.++.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5788999999999877655555544
No 401
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.59 E-value=0.11 Score=51.23 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=30.1
Q ss_pred HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
+..+.+++++++||||||+. +-+++..+.. ..+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 44678999999999999974 3334433321 34577788887773
No 402
>PRK10436 hypothetical protein; Provisional
Probab=93.56 E-value=0.22 Score=51.11 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhc--CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 123 TPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 123 ~~~Q~~~i~~~l~--~~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.+.|.+.+..++. +.-+|+++|||||||++ +..++.++.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 4445555555543 23488899999999986 444666654
No 403
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.43 E-value=0.57 Score=53.07 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.8
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcH
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~ 289 (504)
.--+||||++|.+.+......+..++...++...+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999987665566888888888888888888877543
No 404
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.43 E-value=1.2 Score=44.35 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=64.4
Q ss_pred EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH---HHHHHHhcCCCCceEEEE--ECCCCChH
Q 010672 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI---QQESTKFGASSKIKSTCI--YGGVPKGP 214 (504)
Q Consensus 140 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~---~~~~~~~~~~~~~~~~~~--~gg~~~~~ 214 (504)
++.++.|+|||.+..+.++.++...+. ...++++....++...+ ...+..+... .+..... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI--- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE---
Confidence 467899999999987777777766431 24566664444555542 2233333333 2222111 11000
Q ss_pred hHHHHhcCCcEEEeChHHH--HHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC--CcHH
Q 010672 215 QVRDLQKGVEIVIATPGRL--IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT--WPKE 290 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l--~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT--~~~~ 290 (504)
.+.++..|.+.+...- ..-+.. ..++++++||+-.+.+..+...+........... .+++|.| ....
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGW 142 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSH
T ss_pred ---EecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCc
Confidence 0134555666653321 111111 3578999999988765544444333333322222 2244443 2344
Q ss_pred HHHHHHHhhcCC
Q 010672 291 VEHLARQYLYNP 302 (504)
Q Consensus 291 ~~~~~~~~~~~~ 302 (504)
...+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 555666555554
No 405
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.38 E-value=0.58 Score=43.29 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=16.1
Q ss_pred hcCC-cEEEEccCCCchHHHHH
Q 010672 134 LKGR-DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 134 l~~~-~~l~~a~TGsGKT~~~~ 154 (504)
..++ -+.++++.|||||+..-
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH
Confidence 3455 57788999999998754
No 406
>PF05729 NACHT: NACHT domain
Probab=93.29 E-value=0.63 Score=40.25 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=17.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
-+++.|++|+|||... -.+...+..
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHh
Confidence 3688899999999763 334444444
No 407
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.21 E-value=0.35 Score=50.13 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
.+.+|+.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 357999999999999853
No 408
>PRK13764 ATPase; Provisional
Probab=93.21 E-value=0.2 Score=52.88 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.7
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
..+++++++|||||||+. +.+++.++... +..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~~-------~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYADM-------GKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhhC-------CCEEEEECCCccc
Confidence 357799999999999975 44455555431 3445466555555
No 409
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.21 E-value=0.46 Score=49.47 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=41.2
Q ss_pred HHHHHHhcC-----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 128 QGWPMALKG-----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 128 ~~i~~~l~~-----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..++.++.| .-+++.+|+|+|||+..+-.+...+.. +.+++|++ ..|-..|+...+..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555543 458999999999998654433333222 56688877 5677788888888775
No 410
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.20 E-value=1.7 Score=42.47 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=33.3
Q ss_pred ccccEEEEcCccccccCC-cHHHHHHHHHhc------CCCCceEEecCCCcHHHHHHHHHhh
Q 010672 245 RRVTYLVLDEADRMLDMG-FEPQIKKILSQI------RPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~-~~~~~~~il~~~------~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.++++||+|=+-++.... ....+.++...+ .+...++.++||...+...-+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 467899999998765322 234555554432 2455678889997655444444443
No 411
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.15 E-value=0.092 Score=48.80 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.1
Q ss_pred EEEEccCCCchHHH
Q 010672 139 LIGIAETGSGKTLA 152 (504)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (504)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999985
No 412
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.10 E-value=1.2 Score=39.27 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=37.2
Q ss_pred cccEEEEcCccccccCCcH--HHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHh
Q 010672 246 RVTYLVLDEADRMLDMGFE--PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~--~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~ 298 (504)
.+++||+||+-..+..++. ..+..++..-+++..+|+.--.+|+.+.+.+...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 5899999999988877743 3455555555566666666666888888777654
No 413
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=0.52 Score=46.42 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=28.0
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
....+++||||+|+|.... ...+.+.++..++...+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999987654 4556666766555555555443
No 414
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.96 E-value=0.71 Score=47.48 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=55.8
Q ss_pred HHHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010672 128 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (504)
Q Consensus 128 ~~i~~~l~-----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 202 (504)
..++.++. |.-+++.+++|+|||...+. ++..+... +.+++|+..- +-..|+...+.+++....
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq-~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg~~~~-- 149 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQ-VACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLGLPEP-- 149 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcCCChH--
Confidence 34555554 44588899999999986443 33333321 3458888764 555677766666542111
Q ss_pred EEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
...+.. -.+.+.+...+.. .+.++||+|.+..+.
T Consensus 150 ~l~~~~------------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 NLYVLS------------------ETNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HeEEcC------------------CCCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 000100 0233445444433 246799999999765
No 415
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.94 E-value=0.76 Score=49.56 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=25.1
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCc
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~ 288 (504)
....+++|+||||.|.... ...+.+.++..++...+|+ .+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifIL-aTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFIL-ATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEE-EcCCh
Confidence 3567899999999986543 2344444555444443343 44433
No 416
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.92 E-value=0.32 Score=53.17 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=51.3
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC----C-CCeEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMD----G-WPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~----~-~~~~~-ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
.++++++.++|..-+.+.++.|.+. + +.+.. +|+.++..++++++++|.+|+.+|||+|+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 4578999999999888888888653 2 44333 899999999999999999999999999954
No 417
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.90 E-value=1.2 Score=49.74 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHHh----c--CCcEEEEccCCCchHHHHHH
Q 010672 126 QAQGWPMAL----K--GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 126 Q~~~i~~~l----~--~~~~l~~a~TGsGKT~~~~l 155 (504)
|.+.+..+. . ..+.++.+|+|+|||..+-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 666565544 2 34799999999999986443
No 418
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.88 E-value=0.9 Score=50.87 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
.+.++.+|+|+|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999998654
No 419
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=6.2 Score=38.99 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchHHH
Q 010672 137 RDLIGIAETGSGKTLA 152 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (504)
+.+|+.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999974
No 420
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.87 E-value=0.84 Score=46.07 Aligned_cols=144 Identities=16% Similarity=0.082 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
.+++.+++ .+..+...|.++.-..-.|.. .+.+=.|||||.+.++- +.++.. ....-+++|.+=|+.|+.++
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh~-----knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELHS-----KNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHhc-----CCCCceEEEEeehHHHHHHH
Confidence 34444443 344556667776544444544 56677899999763332 223222 12366799999999999999
Q ss_pred HHHHHHhcCC--------CCceEEEEECCCCChHhHHHHhcCC---cEEEeChH----HHHHHHHccCcccccccEEEEc
Q 010672 189 QQESTKFGAS--------SKIKSTCIYGGVPKGPQVRDLQKGV---EIVIATPG----RLIDMLESHNTNLRRVTYLVLD 253 (504)
Q Consensus 189 ~~~~~~~~~~--------~~~~~~~~~gg~~~~~~~~~~~~~~---~Iiv~T~~----~l~~~l~~~~~~l~~~~~lV~D 253 (504)
.....+|+-. ..+.+..-.||............-| .+-++-.+ -+..-+.....+..-+++|.+|
T Consensus 223 r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilID 302 (660)
T COG3972 223 RTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILID 302 (660)
T ss_pred HHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEec
Confidence 8887776421 1123333445555443322222211 22222111 1111122223346678999999
Q ss_pred Ccccccc
Q 010672 254 EADRMLD 260 (504)
Q Consensus 254 Eah~~~~ 260 (504)
|++-..+
T Consensus 303 E~QDFP~ 309 (660)
T COG3972 303 ESQDFPQ 309 (660)
T ss_pred ccccCCH
Confidence 9997543
No 421
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.81 E-value=0.55 Score=48.32 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=23.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
...+++||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 467899999999986443 334455555544444444433
No 422
>PRK09354 recA recombinase A; Provisional
Probab=92.72 E-value=0.32 Score=47.78 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
|+-+.+.+|+|||||..++..+...... +..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 3458889999999998765544333222 566888887666654
No 423
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.71 E-value=0.25 Score=48.01 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
|+-+++.+|+|+|||..++- ++...... +..++|+..-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~-~~~~~~~~-------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALH-AIAEAQKA-------GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCcEEEEcccchhHH
Confidence 34588999999999987554 33333331 555777766554444
No 424
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.67 E-value=0.37 Score=51.10 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhcC-C-cEEEEccCCCchHHHHHHHHHHHHh
Q 010672 123 TPIQAQGWPMALKG-R-DLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~-~-~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.+-|.+.+..++.. + -+++++|||||||++ +..++.++.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 56667777665543 3 478899999999987 444666553
No 425
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.64 E-value=0.56 Score=44.45 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=56.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc---HHHHHHHHHHHHHhcCCCCceEEEEECCCCCh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt---~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~ 213 (504)
.=+++.|.||.|||..++-.+.+.+... +..|+|++.- .+++..+....... ....+..+....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~la~~s~v------~~~~i~~g~l~~ 86 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARLLARLSGV------PYNKIRSGDLSD 86 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHHHHHHHTS------THHHHHCCGCHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHhhcc------hhhhhhccccCH
Confidence 3478889999999977555444444431 4668888863 34443333322221 111111121112
Q ss_pred HhHHHH------hcCCcEEE-e----ChHHHHHHHHccCcccccccEEEEcCccccccC
Q 010672 214 PQVRDL------QKGVEIVI-A----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (504)
Q Consensus 214 ~~~~~~------~~~~~Iiv-~----T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~ 261 (504)
.++..+ .....+.| . |++.+...+.........+++||||=.|.|...
T Consensus 87 ~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 87 EEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 222111 11223443 3 344555544432222267899999999988763
No 426
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.64 E-value=0.17 Score=48.59 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
+.+++++|||+|||++...
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3577889999999987443
No 427
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=0.57 Score=48.61 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=22.5
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEE
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLY 282 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~ 282 (504)
.....++|+||||.|....+ ..+.+.+...++..-+|+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEE
Confidence 35678999999998865432 334444444434443333
No 428
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.60 E-value=3 Score=40.56 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
+.+-+.++.|.|||.. +-++-+..--. .-.-++.-.-...+++++..+. |..
T Consensus 66 ~GlYl~GgVGrGKT~L--MD~Fy~~lp~~---------~k~R~HFh~FM~~vH~~l~~l~-----------g~~------ 117 (367)
T COG1485 66 RGLYLWGGVGRGKTML--MDLFYESLPGE---------RKRRLHFHRFMARVHQRLHTLQ-----------GQT------ 117 (367)
T ss_pred ceEEEECCCCccHHHH--HHHHHhhCCcc---------ccccccHHHHHHHHHHHHHHHc-----------CCC------
Confidence 5688999999999974 33332222110 0122455566677777777653 111
Q ss_pred HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHh-cCCCCceEEecCCCcHHH
Q 010672 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQTLYWSATWPKEV 291 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~-~~~~~~~i~~SAT~~~~~ 291 (504)
+.+-. +.+-+ ..+.++|.|||+|. .|-+-.-.+..+++. +.....++..|.|.|+++
T Consensus 118 -------dpl~~----iA~~~------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 -------DPLPP----IADEL------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------CccHH----HHHHH------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11100 11111 23567899999994 333223334444443 356788999999998865
No 429
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.60 E-value=0.44 Score=47.41 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=17.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
.+|+.+|+|+|||..+.. +...+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~-la~~l~~ 62 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI-FAKALNC 62 (355)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 478999999999976443 4445443
No 430
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.14 Score=48.69 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=21.0
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
++..|+++.+|||||||+.+. .|..+++
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 445689999999999998644 4555555
No 431
>PRK06904 replicative DNA helicase; Validated
Probab=92.53 E-value=2 Score=44.44 Aligned_cols=114 Identities=18% Similarity=0.055 Sum_probs=55.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC-CCChHhH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG-VPKGPQV 216 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg-~~~~~~~ 216 (504)
=+++.|.||.|||..++-.+...+..+ +..|+|++.- .-..|+...+-..... +....+..+ .-...++
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~-------g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMAS-------EKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQDW 292 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc-------CCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHHHH
Confidence 377789999999975543333222221 4457776542 3344454443332111 221112222 2222222
Q ss_pred H-------HHhcCCcEEEe-----ChHHHHHHHHccCcccccccEEEEcCccccccC
Q 010672 217 R-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM 261 (504)
Q Consensus 217 ~-------~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~ 261 (504)
. .+....++.|. |+..+...+.+....-..+++||||=.+.|...
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 2 22223446652 555554433321111125789999999887543
No 432
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.53 E-value=0.28 Score=46.59 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhc-CC-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 123 TPIQAQGWPMALK-GR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 123 ~~~Q~~~i~~~l~-~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
.+-|.+.+..++. .+ .++++++||||||.. +..++.++.. ...+++.+-...|+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~-------~~~~iitiEdp~E~ 120 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT-------PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC-------CCCeEEEECCCcee
Confidence 3345555554443 33 488999999999975 3445555432 13456666555443
No 433
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.51 E-value=0.17 Score=52.84 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
+|+.||.+....+. .|+--|+..|||+|||+..+-.++.++.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 78899999887765 5787889999999999987777776653
No 434
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.55 Score=50.25 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=26.7
Q ss_pred ccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 243 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 243 ~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.....+++||||+|.|.... ...+.++++..+... ++++.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 34577899999999986543 345556666554444 3444444
No 435
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.46 E-value=0.65 Score=51.90 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=69.1
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCC
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVK 411 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gvdi~ 411 (504)
..+...++++|.|.|+|---|+.-.+.+++. .+++..+..=.+.++...+++..++|+++|+|.| .+++.+|-+.
T Consensus 636 AFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 636 AFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK 715 (1139)
T ss_pred HHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe
Confidence 3455567789999999988888877777664 4556678888899999999999999999999999 8899999999
Q ss_pred CCCEEE
Q 010672 412 DVKYVI 417 (504)
Q Consensus 412 ~v~~VI 417 (504)
++-.||
T Consensus 716 dLGLlI 721 (1139)
T COG1197 716 DLGLLI 721 (1139)
T ss_pred cCCeEE
Confidence 999888
No 436
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.43 E-value=0.23 Score=52.54 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=28.7
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
+++-+++|+||+-.-+|...+..+.+.+....++.-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 55677899999988888776777777776665555444443
No 437
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.42 E-value=0.23 Score=48.36 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999753
No 438
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.42 E-value=0.45 Score=48.02 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+++.+|+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999863
No 439
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.42 E-value=0.67 Score=51.65 Aligned_cols=19 Identities=37% Similarity=0.256 Sum_probs=16.2
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
.++++.+|+|+|||.++..
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5799999999999987543
No 440
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.39 E-value=0.5 Score=44.35 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~ 152 (504)
+-.|+.+++.++.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999963
No 441
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.37 E-value=0.33 Score=47.24 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
|+-+.+.+|+|+|||..++-.+. .... .+..++|+.+-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~-~~~~-------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIA-EAQK-------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCCEEEECccccHHH
Confidence 34588899999999976554333 3332 1556888887665554
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.36 E-value=1.6 Score=40.74 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=31.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCC----CCCCCEEEEEc---ccHHHHHHHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLA---PTRELAVQIQQEST 193 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~----~~~~~~vlil~---Pt~~L~~q~~~~~~ 193 (504)
.++.||.|+|||+.++-.++.-..-.+... ...+.+|||++ |..++...+.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 678999999999876654444332222221 12355688888 44444444444333
No 443
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.29 E-value=0.84 Score=47.41 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=55.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
..+.+||.++++.-+....+.|...++.+..++++.+..++..++....+++.+|+++|.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 356799999999999999999999999999999999999999999999999999999994
No 444
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.28 E-value=0.15 Score=52.90 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=39.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.+++++||||||||..+++|.+... ...+||.-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999876431 1148888898899887777776654
No 445
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.22 E-value=0.66 Score=51.84 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
.++++.+|+|+|||..+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999987543
No 446
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.21 E-value=0.5 Score=52.02 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+++.+|+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999853
No 447
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.19 E-value=0.78 Score=42.35 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+.-+++.+++|+|||..++-.+...+.. +..++|++.. +-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 4568889999999997544433333332 5568887664 45677777777764
No 448
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.19 E-value=0.22 Score=47.54 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=29.6
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
..+.+++++++||||||.. +-.++..+... ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccce
Confidence 3467899999999999976 44455554431 3567888777666
No 449
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.12 E-value=0.44 Score=42.90 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=12.8
Q ss_pred EEEEccCCCchHHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLLP 156 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~ 156 (504)
.++++.+|||||+-++.-
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 478899999999876655
No 450
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.11 E-value=0.12 Score=52.16 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
+++++|+||||||..+++|.+... ...++|+-|.-++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999888866432 234889999989987776665554
No 451
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.06 E-value=0.18 Score=53.42 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=40.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+++++.||||||||..+++|-+.... ..++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~----------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE----------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC----------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 46999999999999999999876532 238999999999988887777654
No 452
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.03 E-value=0.44 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=17.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
-+|+.+|.|+|||.++.+ +...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhc
Confidence 388999999999987654 444444
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.91 E-value=1 Score=49.58 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchHHH
Q 010672 136 GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (504)
.+.+++.+|+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 46799999999999975
No 454
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=1.3 Score=47.03 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=32.9
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
+++..++|+|||-..+|..-+..+++.+..+..+ ++++.=|-
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 5677899999999999988788888888877666 45555443
No 455
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.76 E-value=0.27 Score=54.87 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=73.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEccccccCCCCCCCCEEEEcCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDVAARGLDVKDVKYVINYDFP 422 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~-vLVaT~~~~~Gvdi~~v~~VI~~~~p 422 (504)
..++|||+.--...+.++..+.-.++....--+ .++-...+..|++ ++ +|+-+...+.|+|+-++.+|+..++-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 358999998877777777777655544433322 3344556677766 44 55777888999999999999999999
Q ss_pred CCHhHHHHHhcccccCCCcceEE
Q 010672 423 GSLEDYVHRIGRTGRAGAKGTAY 445 (504)
Q Consensus 423 ~s~~~~~QriGR~gR~g~~g~~~ 445 (504)
.++.+-.|.+||+.|.|++-...
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchh
Confidence 99999999999999999875443
No 456
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.65 E-value=0.31 Score=51.66 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=87.5
Q ss_pred CCCcHHHHHHHHHHhc--------CC--cEEEEccCCCch--HHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH
Q 010672 120 FEPTPIQAQGWPMALK--------GR--DLIGIAETGSGK--TLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~--------~~--~~l~~a~TGsGK--T~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q 187 (504)
-.+...|.+++-.+-+ |. .+|+-...|.|| |.+-++ .-.++.. .+++|++.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiI-feNyLkG--------RKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGII-FENYLKG--------RKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEE-ehhhhcc--------cceeEEEEeccccccc
Confidence 3567788888865433 32 256655555555 544222 2333332 5679999999999877
Q ss_pred HHHHHHHhcCCCCceEEEEECCCCChHh-HHHHhcCCcEEEeChHHHHHHHHcc-Ccc-------c----ccc-cEEEEc
Q 010672 188 IQQESTKFGASSKIKSTCIYGGVPKGPQ-VRDLQKGVEIVIATPGRLIDMLESH-NTN-------L----RRV-TYLVLD 253 (504)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~-~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~-------l----~~~-~~lV~D 253 (504)
....+...+.. +|.|..+..-...... ...-.-.-.|++||+..|+-.-... ... + .++ .+||||
T Consensus 334 AERDL~DigA~-~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 334 AERDLRDIGAT-GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhhchhhcCCC-CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 77777776643 3655543221100000 0000112369999998876433211 100 1 112 589999
Q ss_pred CccccccC---------CcHHHHHHHHHhcCCCCceEEecCC
Q 010672 254 EADRMLDM---------GFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 254 Eah~~~~~---------~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
|||+..+. -.+..+..+-..+ |+.+++.-|||
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASAT 453 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASAT 453 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeecc
Confidence 99976541 1344455554455 77889999999
No 457
>PRK09087 hypothetical protein; Validated
Probab=91.54 E-value=0.76 Score=42.53 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=24.7
Q ss_pred cEEEEcCccccccCCcHHHHHHHHHhcCC-CCceEEecCCCcH
Q 010672 248 TYLVLDEADRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPK 289 (504)
Q Consensus 248 ~~lV~DEah~~~~~~~~~~~~~il~~~~~-~~~~i~~SAT~~~ 289 (504)
++|++|++|.+.. ....+..++..+.. ..++|+.|.+.|.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 3799999998632 24556777766654 3445544444444
No 458
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.50 E-value=0.32 Score=47.35 Aligned_cols=56 Identities=23% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCCcHHHHHHH-HHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 120 FEPTPIQAQGW-PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 120 ~~~~~~Q~~~i-~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
..+.+.|..-+ -++..+++++++++||||||.. +.+++..+.. ..+++.+--|.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 35566665554 4455778999999999999975 5555555433 3457777777666
No 459
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.30 E-value=2 Score=42.21 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=31.5
Q ss_pred ccccEEEEcCccccccCC--cHHHHHHHHHhcCCCCceEEecCCCcHH
Q 010672 245 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKE 290 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~--~~~~~~~il~~~~~~~~~i~~SAT~~~~ 290 (504)
...-+||+|-|+.+-|++ ..+.+.++-..++.+.-.|.+|+++++.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 346689999999999887 2233444444455556678889997663
No 460
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.29 E-value=2.9 Score=43.20 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=72.7
Q ss_pred cCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH---HHh
Q 010672 144 ETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ 220 (504)
Q Consensus 144 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~ 220 (504)
-.++||+..-++++.+-+.. +-.|.+||.+-+.+-|.|+++++. ...++.+..++|..+...... .++
T Consensus 365 lvF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHh
Confidence 45788888877755544433 236779999999999999999987 345688999999866544433 233
Q ss_pred c-CCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 221 K-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 221 ~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
. ...++||| +.+.++ .++..+.+||-+++-.
T Consensus 436 ~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred ccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 2 46899999 777775 7788999999977664
No 461
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.27 E-value=0.39 Score=49.86 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHhcC-Cc-EEEEccCCCchHHHHHHHHHHHHh
Q 010672 123 TPIQAQGWPMALKG-RD-LIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~-~~-~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.+-|.+.+..++.. +. +++++|||||||+. +..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 56677777666654 33 77889999999986 333555543
No 462
>PTZ00146 fibrillarin; Provisional
Probab=91.22 E-value=3.7 Score=39.25 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHHHHhcC--------CcEEEEccCCCchHHHHHH
Q 010672 119 FFEPTPIQAQGWPMALKG--------RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~--------~~~l~~a~TGsGKT~~~~l 155 (504)
|..-+|++++.-.+++.+ .+.++-.-+|+|=|+..+.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHH
Confidence 334467777777666543 2456667788886655433
No 463
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.19 E-value=1.2 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=20.1
Q ss_pred HHHhcCCcEEEEccCCCchHHHHH
Q 010672 131 PMALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 131 ~~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
+.+..+.|++..+|+|+|||-.|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556678899999999999997654
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.16 E-value=0.84 Score=45.56 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
.|+.+++.+|+|+|||..... +...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 578899999999999975333 44443
No 465
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.13 E-value=1 Score=44.41 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998644
No 466
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.12 E-value=0.93 Score=45.10 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=23.8
Q ss_pred HHHHHHHHHh---cCCcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 125 IQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 125 ~Q~~~i~~~l---~~~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.=..+++.+. .|+..++.||.|+|||..+. .+...+.
T Consensus 155 ~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK-~Ian~I~ 194 (416)
T PRK09376 155 LSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQ-NIANSIT 194 (416)
T ss_pred cceeeeeeecccccCceEEEeCCCCCChhHHHH-HHHHHHH
Confidence 3334444433 57899999999999997532 2444444
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.04 E-value=0.52 Score=42.17 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCCCchHHH
Q 010672 121 EPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l-~~~~~l~~a~TGsGKT~~ 152 (504)
.+++-|.+.+.... .+..+++++|||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34566777776654 567899999999999975
No 468
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.77 Score=46.09 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=31.6
Q ss_pred cccEEEEcCccccccC--------CcHHHHHHHHHh----cCCCCceEEecCC-CcHHHHHHHHH
Q 010672 246 RVTYLVLDEADRMLDM--------GFEPQIKKILSQ----IRPDRQTLYWSAT-WPKEVEHLARQ 297 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~--------~~~~~~~~il~~----~~~~~~~i~~SAT-~~~~~~~~~~~ 297 (504)
...++++||+|.++.. ......+.++.. ..++.+++++.|| .|.++.+-+..
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 5678899999987632 122233333332 3466689999999 45555555444
No 469
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.94 E-value=1.3 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=17.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.+++.+|.|+|||..+.. +...+.
T Consensus 41 ~~L~~G~~G~GKt~~a~~-la~~l~ 64 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI-LARKIN 64 (367)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 588999999999976543 344443
No 470
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=90.90 E-value=1.4 Score=44.03 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=18.5
Q ss_pred HhcCCcEEEEccCCCchHHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
.-.+..+++.++||+||++.+.
T Consensus 98 ap~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 98 APSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCCCCcEEEecCCCccHHHHHH
Confidence 4467889999999999998754
No 471
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=2.8 Score=39.78 Aligned_cols=142 Identities=20% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCC-----cEEEEccCCCchHHHHHHHHHHHHhcCCCCCC
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGR-----DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 169 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~-----~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 169 (504)
.+|...|++..=-+...++|+..=+ -|+ -+|.+..|+ .+|+.+|+|+||+..+- +...-
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVATE-------- 189 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVATE-------- 189 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHhh--------
Confidence 4566778876433444555544321 111 135566664 49999999999996422 22211
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccE
Q 010672 170 GDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (504)
Q Consensus 170 ~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (504)
.....+-+.+..|+..|.-+-.++-++ |..+... ...++
T Consensus 190 --AnSTFFSvSSSDLvSKWmGESEkLVkn----------------------------------LFemARe-----~kPSI 228 (439)
T KOG0739|consen 190 --ANSTFFSVSSSDLVSKWMGESEKLVKN----------------------------------LFEMARE-----NKPSI 228 (439)
T ss_pred --cCCceEEeehHHHHHHHhccHHHHHHH----------------------------------HHHHHHh-----cCCcE
Confidence 123677777788877776554443210 2222221 23568
Q ss_pred EEEcCccccccCC---cHHHHHHH----HHhc----CCCCceEEecCCCcHHHHH
Q 010672 250 LVLDEADRMLDMG---FEPQIKKI----LSQI----RPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 250 lV~DEah~~~~~~---~~~~~~~i----l~~~----~~~~~~i~~SAT~~~~~~~ 293 (504)
|.+||+|.+.... -....++| +-++ ..+--++.+-||--+.+.+
T Consensus 229 IFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 229 IFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLD 283 (439)
T ss_pred EEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHH
Confidence 9999999876432 11222222 2222 2345678889996555443
No 472
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=90.81 E-value=1.3 Score=38.84 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=38.7
Q ss_pred ccccEEEEcCccccccCCc--HHHHHHHHHhcCCCCceEEecCCCcHHHHHHHH
Q 010672 245 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~--~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~ 296 (504)
..+++||+||+-..++.++ ...+..+++..++..-+|+.--..|+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5689999999998888774 345666677666666777777778887776654
No 473
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.80 E-value=0.35 Score=42.93 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=29.9
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCC-CceEEecCC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPD-RQTLYWSAT 286 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~-~~~i~~SAT 286 (504)
.+.+++++||...-+|......+..++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 466899999999988877666676676665433 556665544
No 474
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.77 E-value=1.4 Score=46.04 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=76.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH----HhcCCCCceEEEEECCCCC
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST----KFGASSKIKSTCIYGGVPK 212 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~----~~~~~~~~~~~~~~gg~~~ 212 (504)
+-.+..-|=-.|||+ ++.|++..++.. -.+-++.|++.-+..++-+.+++. ++.+...+ ...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~------ 268 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IEN------ 268 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eee------
Confidence 457777899999997 477888777762 237789999999988877776654 33222111 111
Q ss_pred hHhHHHHhcCCcEEEeChHH-----HHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCCCceEEecCC
Q 010672 213 GPQVRDLQKGVEIVIATPGR-----LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 286 (504)
Q Consensus 213 ~~~~~~~~~~~~Iiv~T~~~-----l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT 286 (504)
++..|++.-|+. +....+.+...=++++++++||||-+. ...+..|+-.+ .++.++|+.|.|
T Consensus 269 --------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 --------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 111334433322 111112233445678999999999765 34555666554 467788888877
No 475
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.72 E-value=1.2 Score=46.70 Aligned_cols=68 Identities=29% Similarity=0.338 Sum_probs=54.2
Q ss_pred EEEEeCCcccHHHHHHHHhh----C-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccccC-CCCCCCCE
Q 010672 347 ILIFMDTKKGCDQITRQLRM----D-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAARG-LDVKDVKY 415 (504)
Q Consensus 347 ~lIf~~s~~~~~~l~~~L~~----~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~~G-vdi~~v~~ 415 (504)
+||+++|++.|..+++.++. . ++.+..++|+++...+...++ .| .+|||||+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999888764 2 567889999998777664444 46 99999995 45566 88888988
Q ss_pred EEE
Q 010672 416 VIN 418 (504)
Q Consensus 416 VI~ 418 (504)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 883
No 476
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.73 Score=48.77 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=39.6
Q ss_pred ECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 207 ~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
.||.....+++.-++ .-|=+-|++++.-+...... --++++||+|.|...-.+..-..+++-+.
T Consensus 383 LGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 383 LGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred cCccccHHHhccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 456554444433222 34446799998887654331 23799999999987655555556665553
No 477
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.67 E-value=1.9 Score=42.06 Aligned_cols=40 Identities=5% Similarity=0.098 Sum_probs=26.4
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
....+++|+||+|.|.... ...+.+.++..++...+|+.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 3567899999999987554 445666666654455444444
No 478
>PRK08840 replicative DNA helicase; Provisional
Probab=90.57 E-value=3.6 Score=42.47 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=53.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
.=+++.|.||.|||.-++-.+......+ +..|+|.+.- .-..|+...+-.... ++....+..+.-...++
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~-------~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~ 287 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQ-------DKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQLDDEDW 287 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhC-------CCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCCCCHHHH
Confidence 3477789999999976544333332221 4457766542 233444444332211 12111122222222232
Q ss_pred HH-------HhcCCcEEEe-----ChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 217 RD-------LQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 217 ~~-------~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
.. +.....+.|. |...+...+.+....-..+++||||=.|.|.
T Consensus 288 ~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 288 ARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22 2123345553 3444443332211111247899999999875
No 479
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.52 E-value=2.5 Score=46.93 Aligned_cols=19 Identities=32% Similarity=0.214 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+..+++.+|+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999997643
No 480
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.51 E-value=0.93 Score=41.70 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=28.7
Q ss_pred eChHHHHHHHHccCcccccccEEEEcCccccc-cC----CcHHHHHHHHHhcC-CCCceEEecCCC
Q 010672 228 ATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DM----GFEPQIKKILSQIR-PDRQTLYWSATW 287 (504)
Q Consensus 228 ~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~-~~----~~~~~~~~il~~~~-~~~~~i~~SAT~ 287 (504)
.+...+.+.+...... -+|||||+|.+. .. .+...+..++.... .....+.++++-
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 3444455555543221 689999999998 21 23445555555522 223344456664
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.43 E-value=0.42 Score=43.25 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=23.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
+++++|||||||+. +..++.++... .+.+++.+....++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCccc
Confidence 67889999999986 33355554321 13446666554443
No 482
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.27 E-value=3.1 Score=43.37 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=69.1
Q ss_pred ceEEecCCC--cHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc--CCCeEEEEeCCc
Q 010672 279 QTLYWSATW--PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTK 354 (504)
Q Consensus 279 ~~i~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~lIf~~s~ 354 (504)
-.+.++++. +..+.+++..++.+-. ...++..+....+.+....++.-.+..-+.+.... ..+.+.|.|++-
T Consensus 590 e~v~l~~syrSt~eI~efan~~l~d~~----~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~ 665 (747)
T COG3973 590 EYVGLIASYRSTAEIDEFANSLLPDRF----RIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTD 665 (747)
T ss_pred hhhhhhhhhcChHHHHHHHHHhccCCC----ccchhhcCCCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcH
Confidence 345556554 4567788888877411 11122222233344445555554554444444332 335799999999
Q ss_pred ccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC
Q 010672 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF 421 (504)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~ 421 (504)
.+|..+.+.|++.. +.......-+.|..|.+-+.| -.+.|+.+ ++||.||+
T Consensus 666 ~d~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 666 HDCKAVMDSLREKD----------SQRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred HHHHHHHHHHhhcc----------hhhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 99999999998642 122222223345555433332 34668865 67888876
No 483
>PF12846 AAA_10: AAA-like domain
Probab=90.13 E-value=0.48 Score=45.72 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=30.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
.+++++|+||+|||.... .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 578999999999998755 455555442 566888877765544
No 484
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.13 E-value=2.3 Score=36.17 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.4
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhc
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~ 274 (504)
..+.+++++||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3466899999999888877677777777766
No 485
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.09 E-value=2.2 Score=40.57 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHHHhc-C--CcEEEEccCCCchHHH
Q 010672 128 QGWPMALK-G--RDLIGIAETGSGKTLA 152 (504)
Q Consensus 128 ~~i~~~l~-~--~~~l~~a~TGsGKT~~ 152 (504)
..++.+.. + +++++.+|+|+|||+.
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 33455543 3 5789999999999974
No 486
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.03 E-value=0.66 Score=43.05 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=18.0
Q ss_pred hcCCc-EEEEccCCCchHHHHHHHHHHH
Q 010672 134 LKGRD-LIGIAETGSGKTLAYLLPAIVH 160 (504)
Q Consensus 134 l~~~~-~l~~a~TGsGKT~~~~l~~l~~ 160 (504)
+..+. ++++++|||||+.. +.+++.+
T Consensus 124 ~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cccCceEEEECCCCCCchhh-HHHHhcc
Confidence 44455 77789999999986 3445544
No 487
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.88 E-value=0.28 Score=52.68 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=37.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
++++++||||||||..+++|-+..+. ..++|+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~----------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK----------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC----------CCEEEEeCCchHHHHHHHHHHhC
Confidence 47999999999999999999765432 23888888888877666655554
No 488
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.84 E-value=1.6 Score=40.22 Aligned_cols=45 Identities=27% Similarity=0.134 Sum_probs=26.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
++-+.+.+++|+|||..++..+...+.... -.+....++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~--~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE--LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc--cCCCcceEEEEecCC
Confidence 455888899999999875543333322210 011135577777643
No 489
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.84 E-value=1.6 Score=44.59 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHH----Hhc----C----CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 010672 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPM----ALK----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (504)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~----~l~----~----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 171 (504)
++.+++-++.+...|+..-.+.=.+.+.. +.+ . ..+|+.+|.|||||..+.-.++ ..+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 46777777777777776555544444432 111 1 2489999999999964332222 123
Q ss_pred CCEEEEEcccH
Q 010672 172 GPIVLVLAPTR 182 (504)
Q Consensus 172 ~~~vlil~Pt~ 182 (504)
-|.+=+++|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 67788888853
No 490
>CHL00176 ftsH cell division protein; Validated
Probab=89.80 E-value=1.9 Score=46.35 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+|+.+|+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999854
No 491
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.77 E-value=1.4 Score=47.02 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=29.8
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
+.+-.++|+|||..-+|...+..+.+.+..+.+++.++..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 45568999999999888877888888777665554444433
No 492
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.74 E-value=3 Score=42.86 Aligned_cols=112 Identities=18% Similarity=0.073 Sum_probs=53.4
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
.=+++.|+||+|||..++--+...+... +..|++++.- .-..|+...+...... +....+..+.-...++
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~-------g~~vl~~SlE-m~~~~i~~R~~~~~~~--v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKE-------GKPVAFFSLE-MSAEQLAMRMLSSESR--VDSQKLRTGKLSDEDW 265 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC-------CCeEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHhccCCCCHHHH
Confidence 3478889999999976443333323221 4457777643 3334444444332222 1111111222122222
Q ss_pred -------HHHhcCCcEEEe-----ChHHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 217 -------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 217 -------~~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
..+.. ..+.|. |+..+...+...... ..+++||||=.+.|..
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 12222 345442 445554443321111 2478999999988753
No 493
>PRK14701 reverse gyrase; Provisional
Probab=89.62 E-value=1.2 Score=52.80 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
.+.++||.++|+.-+..+++.|+.. +..+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4558999999999999999888762 456788999999999999999999999999999953
No 494
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.48 E-value=0.88 Score=44.89 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 111 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 111 ~~~l~~~~~~~~~~~Q~~~i~~~l-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
++.+.+.|+ +.+.+.+.+..+. .+.+++++++||||||.. +-.++..+. ...+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~--------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVA--------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCC--------CCCcEEEECCccee
Confidence 444555554 4456777766655 456899999999999974 222332221 13457777777776
No 495
>PHA00350 putative assembly protein
Probab=89.28 E-value=1.8 Score=43.36 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.1
Q ss_pred EEEEccCCCchHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLL 155 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (504)
.++.+..|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 46789999999988664
No 496
>PRK08506 replicative DNA helicase; Provisional
Probab=89.25 E-value=3.4 Score=42.85 Aligned_cols=112 Identities=16% Similarity=0.066 Sum_probs=54.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
.=+++.|.||.|||..++- +..++..+ +..|+|++.- .-..|+...+-..... +....+..+.-....+
T Consensus 193 ~LivIaarpg~GKT~fal~-ia~~~~~~-------g~~V~~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~~~e~ 261 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLN-MALKALNQ-------DKGVAFFSLE-MPAEQLMLRMLSAKTS--IPLQNLRTGDLDDDEW 261 (472)
T ss_pred ceEEEEcCCCCChHHHHHH-HHHHHHhc-------CCcEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHHhcCCCCHHHH
Confidence 3477789999999976554 33333321 4457777542 3344454444322111 1111111122222222
Q ss_pred H-------HHhcCCcEEEe-----ChHHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 217 R-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 217 ~-------~~~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
. .+. ...+.|- |+..+...+.+.......+++||||=.+.|..
T Consensus 262 ~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 262 ERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 2 222 2345543 45555444332111123578999999998753
No 497
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=3.4 Score=38.43 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.7
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+.+++-+|+|+|||+++-
T Consensus 212 kgvllygppgtgktl~ar 229 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCAR 229 (435)
T ss_pred CceEEeCCCCCchhHHHH
Confidence 679999999999998753
No 498
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=89.17 E-value=0.49 Score=47.70 Aligned_cols=47 Identities=28% Similarity=0.455 Sum_probs=32.7
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
...+++++.+.||||||.+ +..++..+..+ +.+++|.=|.-+.....
T Consensus 13 ~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQA-IRHLLDQIRAR-------GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-------T-EEEEEEETTHHHHHH
T ss_pred hhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-------CCEEEEEECCchHHHHh
Confidence 4457899999999999974 66777777664 55688888876665443
No 499
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.13 E-value=0.6 Score=45.91 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
+-+++.+|.|+|||+.+-.
T Consensus 149 lgllL~GPPGcGKTllAra 167 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCEL 167 (413)
T ss_pred eEEEeeCCCCCCHHHHHHH
Confidence 3488889999999986443
No 500
>PRK05748 replicative DNA helicase; Provisional
Probab=89.09 E-value=3.9 Score=42.18 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=53.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHH-HhcCCCCceEEEEECCCCChHh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST-KFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
.-+++.|+||.|||.-++- ++.++... .+..|++++. ..-..|+...+. ..+ ++....+..+.-...+
T Consensus 204 ~livIaarpg~GKT~~al~-ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALN-IAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEG---NIDAQRLRTGQLTDDD 272 (448)
T ss_pred ceEEEEeCCCCCchHHHHH-HHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHH
Confidence 3478889999999976443 44443211 1445777653 233344444442 222 1111111122222222
Q ss_pred HHHH------hcCCcEEEe-----ChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 216 VRDL------QKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 216 ~~~~------~~~~~Iiv~-----T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
+..+ .....+.|. |++.+...+.+.......+++||||=.|.|.
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2211 122345553 4455544333211111257899999999875
Done!