Query 010672
Match_columns 504
No_of_seqs 385 out of 3194
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 8.9E-71 3E-75 563.0 46.6 389 86-477 43-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.3E-64 1.1E-68 513.1 45.6 395 86-481 2-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.4E-60 8.1E-65 483.6 37.7 374 93-473 31-405 (410)
4 3eiq_A Eukaryotic initiation f 100.0 3.7E-59 1.3E-63 475.3 34.7 379 92-477 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 2.8E-58 9.6E-63 466.8 39.2 374 95-476 17-390 (400)
6 1xti_A Probable ATP-dependent 100.0 1.4E-57 4.7E-62 460.2 39.5 370 99-474 8-381 (391)
7 3i5x_A ATP-dependent RNA helic 100.0 1E-57 3.6E-62 482.8 37.9 357 106-463 79-461 (563)
8 1hv8_A Putative ATP-dependent 100.0 4.8E-56 1.6E-60 444.7 42.1 357 98-468 5-362 (367)
9 3fht_A ATP-dependent RNA helic 100.0 6.6E-56 2.2E-60 451.0 40.4 370 93-472 19-401 (412)
10 1fuu_A Yeast initiation factor 100.0 4.6E-58 1.6E-62 464.1 23.9 377 93-477 15-392 (394)
11 3pey_A ATP-dependent RNA helic 100.0 2E-55 6.9E-60 444.7 41.8 357 97-464 3-370 (395)
12 3sqw_A ATP-dependent RNA helic 100.0 4.5E-56 1.5E-60 470.9 37.3 367 96-463 14-410 (579)
13 3fmp_B ATP-dependent RNA helic 100.0 2.7E-56 9.1E-61 462.7 22.7 365 97-471 90-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 3.2E-53 1.1E-57 419.3 38.5 335 106-464 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.5E-52 5.1E-57 440.5 35.6 341 102-460 24-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.5E-53 5.1E-58 443.8 20.4 369 93-472 113-492 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 5.7E-51 1.9E-55 424.4 35.2 341 99-461 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.6E-50 5.5E-55 411.6 28.7 327 109-464 9-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 2E-47 6.8E-52 414.6 36.1 334 98-453 7-410 (715)
20 4a2p_A RIG-I, retinoic acid in 100.0 2.8E-48 9.5E-53 410.3 26.4 331 118-453 4-510 (556)
21 2zj8_A DNA helicase, putative 100.0 7.2E-48 2.4E-52 417.9 29.7 332 100-452 2-388 (720)
22 2ykg_A Probable ATP-dependent 100.0 1.7E-48 5.7E-53 422.7 24.3 339 112-455 4-520 (696)
23 1tf5_A Preprotein translocase 100.0 5.8E-48 2E-52 405.8 27.3 380 51-453 17-547 (844)
24 2p6r_A Afuhel308 helicase; pro 100.0 5.9E-48 2E-52 417.4 26.5 332 100-453 2-390 (702)
25 3l9o_A ATP-dependent RNA helic 100.0 2.2E-47 7.6E-52 425.4 29.9 330 99-451 162-597 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 1.6E-47 5.6E-52 404.1 25.4 332 120-457 3-513 (555)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.3E-46 7.8E-51 410.0 29.7 332 117-453 244-751 (797)
28 4f92_B U5 small nuclear ribonu 100.0 7.1E-47 2.4E-51 435.0 24.9 401 51-460 8-482 (1724)
29 4ddu_A Reverse gyrase; topoiso 100.0 9.5E-46 3.2E-50 412.1 30.6 320 117-464 75-503 (1104)
30 2xgj_A ATP-dependent RNA helic 100.0 1E-44 3.5E-49 400.6 37.8 318 118-459 84-508 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 8.1E-45 2.8E-49 376.8 34.8 323 121-453 9-477 (494)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-45 8.9E-50 405.8 27.0 332 117-453 244-751 (936)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 8.2E-46 2.8E-50 413.0 20.9 320 116-465 53-468 (1054)
34 2fsf_A Preprotein translocase 100.0 1.7E-44 5.6E-49 378.5 24.8 321 117-453 71-585 (853)
35 4gl2_A Interferon-induced heli 100.0 2.6E-45 8.8E-50 397.9 19.0 325 120-450 6-517 (699)
36 4f92_B U5 small nuclear ribonu 100.0 3.1E-43 1.1E-47 404.8 33.1 343 106-460 911-1317(1724)
37 1nkt_A Preprotein translocase 100.0 1.4E-42 4.7E-47 364.2 33.6 324 116-454 107-620 (922)
38 4a4z_A Antiviral helicase SKI2 100.0 9.3E-43 3.2E-47 385.0 33.8 306 121-449 39-490 (997)
39 1gm5_A RECG; helicase, replica 100.0 1.7E-43 5.7E-48 379.4 24.5 334 108-467 356-712 (780)
40 2eyq_A TRCF, transcription-rep 100.0 8.1E-42 2.8E-46 382.9 35.7 323 104-451 586-922 (1151)
41 2oca_A DAR protein, ATP-depend 100.0 8.1E-43 2.8E-47 364.4 22.4 312 120-449 112-453 (510)
42 3fe2_A Probable ATP-dependent 100.0 8.3E-42 2.8E-46 321.3 26.3 239 73-311 3-241 (242)
43 2whx_A Serine protease/ntpase/ 100.0 6.8E-44 2.3E-48 375.8 9.5 323 104-472 155-502 (618)
44 2jlq_A Serine protease subunit 100.0 3.4E-42 1.2E-46 352.5 17.0 311 118-474 1-337 (451)
45 2fwr_A DNA repair protein RAD2 100.0 3.2E-41 1.1E-45 348.9 17.2 294 120-451 92-454 (472)
46 1yks_A Genome polyprotein [con 100.0 1.1E-42 3.8E-47 354.5 4.9 287 132-472 4-323 (440)
47 2xau_A PRE-mRNA-splicing facto 100.0 3.9E-40 1.3E-44 355.6 23.3 337 95-453 68-445 (773)
48 2wv9_A Flavivirin protease NS2 100.0 1.8E-41 6.1E-46 359.5 12.6 308 114-467 203-552 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 1.4E-40 4.8E-45 347.3 14.8 278 121-454 217-517 (666)
50 2z83_A Helicase/nucleoside tri 100.0 7.3E-40 2.5E-44 335.7 11.9 274 129-451 14-313 (459)
51 3h1t_A Type I site-specific re 100.0 1.3E-38 4.6E-43 338.0 20.4 304 121-440 178-545 (590)
52 3iuy_A Probable ATP-dependent 100.0 1.7E-37 5.7E-42 289.3 23.3 215 91-306 11-227 (228)
53 2v6i_A RNA helicase; membrane, 100.0 4.7E-38 1.6E-42 319.8 21.1 269 135-448 1-288 (431)
54 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-37 6.7E-42 293.5 22.2 225 87-311 9-243 (253)
55 3bor_A Human initiation factor 100.0 1.4E-36 4.8E-41 284.6 22.4 213 91-308 22-235 (237)
56 3dkp_A Probable ATP-dependent 100.0 9.7E-37 3.3E-41 287.3 21.3 230 77-310 3-243 (245)
57 3dmq_A RNA polymerase-associat 100.0 7.5E-37 2.5E-41 338.6 23.9 335 120-466 152-628 (968)
58 3ber_A Probable ATP-dependent 100.0 3.6E-36 1.2E-40 283.6 23.2 209 95-308 39-248 (249)
59 2oxc_A Probable ATP-dependent 100.0 5E-36 1.7E-40 279.5 23.4 211 91-307 16-228 (230)
60 1z63_A Helicase of the SNF2/RA 100.0 4.1E-36 1.4E-40 312.8 25.4 326 120-467 36-467 (500)
61 2pl3_A Probable ATP-dependent 100.0 1.7E-35 5.7E-40 277.2 26.4 212 95-308 21-233 (236)
62 1vec_A ATP-dependent RNA helic 100.0 1.3E-35 4.5E-40 271.9 24.8 202 99-305 3-205 (206)
63 3rc3_A ATP-dependent RNA helic 100.0 3.7E-36 1.3E-40 317.8 24.0 282 130-457 149-450 (677)
64 3fmo_B ATP-dependent RNA helic 100.0 8.5E-36 2.9E-40 288.4 24.6 214 87-308 77-298 (300)
65 1qde_A EIF4A, translation init 100.0 1E-35 3.4E-40 276.5 23.7 213 91-309 6-218 (224)
66 1q0u_A Bstdead; DEAD protein, 100.0 2.8E-36 9.7E-41 279.1 19.7 208 97-309 2-213 (219)
67 2gxq_A Heat resistant RNA depe 100.0 2.8E-35 9.5E-40 270.0 25.6 204 100-307 2-205 (207)
68 3ly5_A ATP-dependent RNA helic 100.0 4.8E-35 1.6E-39 278.0 22.9 204 99-303 52-258 (262)
69 1t6n_A Probable ATP-dependent 100.0 8.7E-35 3E-39 269.3 21.8 208 94-306 9-219 (220)
70 3jux_A Protein translocase sub 100.0 2.3E-33 7.8E-38 288.4 32.4 316 121-454 75-590 (822)
71 1z3i_X Similar to RAD54-like; 100.0 3.6E-33 1.2E-37 297.5 33.5 323 121-451 55-528 (644)
72 3mwy_W Chromo domain-containin 100.0 2.1E-33 7.2E-38 306.6 31.6 391 59-470 177-701 (800)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.7E-33 2E-37 305.2 26.5 312 120-449 270-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 6E-31 2.1E-35 236.8 19.5 181 296-479 9-190 (191)
75 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.5E-30 5.3E-35 233.1 18.9 168 313-480 15-182 (185)
76 2ipc_A Preprotein translocase 100.0 2E-28 6.8E-33 256.3 32.2 317 117-452 76-699 (997)
77 1c4o_A DNA nucleotide excision 100.0 3.1E-29 1.1E-33 266.9 26.1 176 276-461 379-560 (664)
78 2d7d_A Uvrabc system protein B 100.0 3.7E-28 1.3E-32 258.4 26.6 175 276-460 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 100.0 8.7E-28 3E-32 211.0 19.5 151 314-465 6-156 (163)
80 1t5i_A C_terminal domain of A 100.0 4.6E-28 1.6E-32 214.6 15.8 160 316-476 4-164 (172)
81 1fuk_A Eukaryotic initiation f 100.0 2.6E-28 8.8E-33 214.9 13.4 160 317-477 3-163 (165)
82 2rb4_A ATP-dependent RNA helic 100.0 3E-27 1E-31 210.2 17.7 154 315-469 5-165 (175)
83 3eaq_A Heat resistant RNA depe 99.9 3.3E-26 1.1E-30 209.7 17.6 147 319-466 7-153 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.1E-25 3.6E-30 215.9 16.9 147 318-465 3-149 (300)
85 3b6e_A Interferon-induced heli 99.9 2.7E-25 9.1E-30 204.7 12.8 166 118-286 30-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.9 5.4E-27 1.8E-31 207.5 0.0 149 317-466 3-152 (170)
87 2vl7_A XPD; helicase, unknown 99.9 3.4E-23 1.2E-27 216.1 23.9 113 332-450 370-520 (540)
88 1rif_A DAR protein, DNA helica 99.9 1.1E-24 3.9E-29 209.0 8.4 156 120-292 112-267 (282)
89 3crv_A XPD/RAD3 related DNA he 99.9 2.3E-21 7.9E-26 203.0 30.2 309 121-451 3-531 (551)
90 3llm_A ATP-dependent RNA helic 99.9 1.8E-22 6.2E-27 188.2 16.1 181 109-303 49-232 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 1.2E-19 4.2E-24 191.4 22.9 317 120-450 2-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 4.9E-20 1.7E-24 171.5 15.6 139 120-290 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 5.6E-20 1.9E-24 174.1 12.3 127 325-451 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 99.0 1.3E-09 4.4E-14 114.8 9.6 146 123-286 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.7 1.5E-06 5E-11 92.0 22.9 70 119-195 178-247 (624)
96 4b3f_X DNA-binding protein smu 98.6 8.1E-07 2.8E-11 94.5 18.6 68 121-196 189-257 (646)
97 2xzl_A ATP-dependent helicase 98.6 3.3E-06 1.1E-10 91.4 22.4 71 119-196 358-428 (802)
98 3upu_A ATP-dependent DNA helic 98.6 1.8E-06 6E-11 88.0 18.9 69 117-192 21-94 (459)
99 2wjy_A Regulator of nonsense t 98.6 8.4E-06 2.9E-10 88.1 24.9 70 119-195 354-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 98.4 7.2E-07 2.5E-11 93.0 11.4 122 120-284 188-313 (574)
101 3lfu_A DNA helicase II; SF1 he 98.4 4.3E-05 1.5E-09 81.4 22.9 71 120-196 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 98.0 4.9E-05 1.7E-09 72.0 12.4 123 325-452 105-238 (328)
103 2o0j_A Terminase, DNA packagin 97.5 0.0014 4.9E-08 64.2 14.3 70 121-196 163-232 (385)
104 3vkw_A Replicase large subunit 97.4 0.00046 1.6E-08 68.5 9.9 104 139-284 164-267 (446)
105 3cpe_A Terminase, DNA packagin 97.3 0.0031 1.1E-07 66.0 15.2 142 121-284 163-311 (592)
106 3ec2_A DNA replication protein 97.2 0.0017 5.8E-08 56.6 9.6 32 123-154 16-56 (180)
107 3te6_A Regulatory protein SIR3 97.0 0.0047 1.6E-07 58.9 11.1 27 136-163 45-71 (318)
108 2b8t_A Thymidine kinase; deoxy 96.9 0.00089 3E-08 60.5 5.5 91 136-259 12-102 (223)
109 1xx6_A Thymidine kinase; NESG, 96.9 0.003 1E-07 55.5 8.5 38 137-182 9-46 (191)
110 2orw_A Thymidine kinase; TMTK, 96.9 0.0018 6.1E-08 56.8 6.6 39 136-182 3-41 (184)
111 1pjr_A PCRA; DNA repair, DNA r 96.8 0.0042 1.4E-07 66.7 10.5 109 120-256 10-120 (724)
112 2j9r_A Thymidine kinase; TK1, 96.8 0.0015 5.1E-08 58.2 5.7 37 139-183 31-67 (214)
113 1uaa_A REP helicase, protein ( 96.5 0.0049 1.7E-07 65.7 8.4 71 121-197 2-72 (673)
114 1a5t_A Delta prime, HOLB; zinc 96.5 0.0052 1.8E-07 59.4 7.8 41 122-163 3-50 (334)
115 1l8q_A Chromosomal replication 96.5 0.011 3.8E-07 56.7 10.0 26 136-162 37-62 (324)
116 2orv_A Thymidine kinase; TP4A 96.4 0.006 2.1E-07 54.8 7.0 39 136-182 19-57 (234)
117 2kjq_A DNAA-related protein; s 96.4 0.0012 4E-08 55.7 2.0 18 135-152 35-52 (149)
118 2zpa_A Uncharacterized protein 96.3 0.0076 2.6E-07 62.9 8.1 112 121-287 175-288 (671)
119 2p65_A Hypothetical protein PF 96.2 0.025 8.6E-07 48.8 9.9 25 136-161 43-67 (187)
120 3kl4_A SRP54, signal recogniti 96.2 0.013 4.6E-07 58.2 8.8 55 245-299 178-235 (433)
121 2w58_A DNAI, primosome compone 96.2 0.024 8.3E-07 50.0 9.7 25 137-162 55-79 (202)
122 3e2i_A Thymidine kinase; Zn-bi 96.1 0.0062 2.1E-07 54.1 5.5 38 137-182 29-66 (219)
123 2v1u_A Cell division control p 96.1 0.038 1.3E-06 54.1 11.6 19 136-154 44-62 (387)
124 1gm5_A RECG; helicase, replica 96.0 0.02 6.8E-07 61.6 9.9 85 334-418 407-496 (780)
125 1jbk_A CLPB protein; beta barr 95.9 0.13 4.6E-06 44.2 13.4 24 137-161 44-67 (195)
126 1g5t_A COB(I)alamin adenosyltr 95.9 0.063 2.2E-06 46.9 10.8 140 137-296 29-172 (196)
127 2z4s_A Chromosomal replication 95.9 0.042 1.4E-06 55.1 10.9 44 246-289 194-239 (440)
128 1d2n_A N-ethylmaleimide-sensit 95.9 0.069 2.4E-06 49.6 11.8 18 137-154 65-82 (272)
129 1w4r_A Thymidine kinase; type 95.8 0.011 3.8E-07 51.7 5.6 38 136-181 20-57 (195)
130 2chg_A Replication factor C sm 95.7 0.044 1.5E-06 48.7 9.6 41 245-286 101-141 (226)
131 3n70_A Transport activator; si 95.7 0.089 3E-06 43.6 10.7 22 133-154 21-42 (145)
132 3h4m_A Proteasome-activating n 95.7 0.036 1.2E-06 51.9 9.1 54 97-153 12-68 (285)
133 3u4q_A ATP-dependent helicase/ 95.6 0.022 7.5E-07 64.9 8.5 70 121-194 10-79 (1232)
134 2qby_B CDC6 homolog 3, cell di 95.6 0.041 1.4E-06 53.9 9.5 38 249-287 136-174 (384)
135 2qgz_A Helicase loader, putati 95.6 0.015 5E-07 55.5 5.8 26 136-162 152-177 (308)
136 3bos_A Putative DNA replicatio 95.5 0.022 7.4E-07 51.7 6.7 20 135-154 51-70 (242)
137 1fnn_A CDC6P, cell division co 95.4 0.028 9.7E-07 55.1 7.6 16 138-153 46-61 (389)
138 3u61_B DNA polymerase accessor 95.3 0.04 1.4E-06 52.7 8.1 41 245-286 104-145 (324)
139 3syl_A Protein CBBX; photosynt 95.2 0.032 1.1E-06 52.9 6.9 18 137-154 68-85 (309)
140 3eie_A Vacuolar protein sortin 95.1 0.12 4.2E-06 49.3 10.8 52 97-154 13-69 (322)
141 3dm5_A SRP54, signal recogniti 95.0 0.13 4.3E-06 51.2 10.7 54 246-299 182-236 (443)
142 4b4t_J 26S protease regulatory 94.8 0.22 7.4E-06 48.8 11.7 54 97-153 143-199 (405)
143 3uk6_A RUVB-like 2; hexameric 94.8 0.26 9.1E-06 47.7 12.5 18 137-154 71-88 (368)
144 2dr3_A UPF0273 protein PH0284; 94.3 0.16 5.4E-06 46.0 9.1 52 135-195 22-73 (247)
145 3pfi_A Holliday junction ATP-d 94.3 0.27 9.1E-06 47.1 11.1 18 137-154 56-73 (338)
146 3cf0_A Transitional endoplasmi 94.3 0.092 3.1E-06 49.6 7.5 55 97-154 10-67 (301)
147 1njg_A DNA polymerase III subu 94.2 0.34 1.2E-05 43.3 11.1 16 138-153 47-62 (250)
148 3oiy_A Reverse gyrase helicase 94.1 0.16 5.6E-06 50.2 9.3 83 338-420 58-147 (414)
149 2qby_A CDC6 homolog 1, cell di 94.0 0.084 2.9E-06 51.5 7.0 18 136-153 45-62 (386)
150 1sxj_E Activator 1 40 kDa subu 94.0 0.1 3.5E-06 50.4 7.5 42 245-287 133-174 (354)
151 1jr3_A DNA polymerase III subu 94.0 0.22 7.4E-06 48.4 9.7 39 245-284 118-156 (373)
152 1iqp_A RFCS; clamp loader, ext 93.9 0.13 4.5E-06 48.8 8.0 40 245-285 109-148 (327)
153 2gno_A DNA polymerase III, gam 93.9 0.12 4.3E-06 48.8 7.6 40 244-284 80-119 (305)
154 1sxj_D Activator 1 41 kDa subu 93.9 0.095 3.2E-06 50.6 7.0 39 246-285 133-171 (353)
155 2qz4_A Paraplegin; AAA+, SPG7, 93.6 0.85 2.9E-05 41.6 12.8 19 136-154 39-57 (262)
156 3vfd_A Spastin; ATPase, microt 93.6 0.63 2.1E-05 45.6 12.4 19 136-154 148-166 (389)
157 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.3 1E-05 43.6 9.3 21 135-155 22-42 (235)
158 4b4t_H 26S protease regulatory 93.4 0.11 3.8E-06 51.6 6.5 55 96-153 203-260 (467)
159 2eyq_A TRCF, transcription-rep 93.4 0.27 9.3E-06 55.4 10.3 78 340-417 648-730 (1151)
160 2qp9_X Vacuolar protein sortin 93.2 0.22 7.5E-06 48.3 8.2 18 137-154 85-102 (355)
161 1sxj_C Activator 1 40 kDa subu 93.1 0.32 1.1E-05 46.6 9.2 39 245-284 109-147 (340)
162 4b4t_I 26S protease regulatory 92.9 0.45 1.5E-05 46.9 9.7 17 137-153 217-233 (437)
163 2l8b_A Protein TRAI, DNA helic 92.8 0.099 3.4E-06 44.8 4.4 120 123-286 36-158 (189)
164 1sxj_A Activator 1 95 kDa subu 92.8 0.26 8.8E-06 50.4 8.5 40 246-287 148-189 (516)
165 3pvs_A Replication-associated 92.7 0.17 5.8E-06 50.7 6.6 18 137-154 51-68 (447)
166 4b4t_K 26S protease regulatory 92.6 0.48 1.6E-05 46.9 9.6 55 96-153 166-223 (428)
167 2r6a_A DNAB helicase, replicat 92.5 0.42 1.4E-05 47.9 9.5 38 136-180 203-240 (454)
168 1hqc_A RUVB; extended AAA-ATPa 92.4 0.18 6.2E-06 47.9 6.3 19 136-154 38-56 (324)
169 1sxj_B Activator 1 37 kDa subu 92.2 0.21 7.3E-06 47.2 6.6 39 246-285 107-145 (323)
170 2q6t_A DNAB replication FORK h 92.2 0.66 2.3E-05 46.4 10.3 37 137-180 201-237 (444)
171 2px0_A Flagellar biosynthesis 92.1 0.87 3E-05 42.7 10.5 20 136-155 105-124 (296)
172 1w5s_A Origin recognition comp 92.1 0.29 9.9E-06 48.2 7.6 17 137-153 51-69 (412)
173 2l82_A Designed protein OR32; 91.8 1.5 5.2E-05 33.2 9.2 49 347-395 5-53 (162)
174 3cmu_A Protein RECA, recombina 91.7 0.21 7.2E-06 58.6 6.7 45 130-182 1415-1465(2050)
175 3hu3_A Transitional endoplasmi 91.7 0.21 7.1E-06 50.6 6.0 19 136-154 238-256 (489)
176 2p6n_A ATP-dependent RNA helic 91.5 1.5 5.1E-05 38.0 10.7 73 172-254 54-130 (191)
177 2cvh_A DNA repair and recombin 91.5 0.96 3.3E-05 39.9 9.7 20 136-155 20-39 (220)
178 2zr9_A Protein RECA, recombina 91.4 0.12 4E-06 50.1 3.6 38 136-181 61-98 (349)
179 2fna_A Conserved hypothetical 91.4 5.6 0.00019 37.6 15.8 53 229-286 123-178 (357)
180 4ddu_A Reverse gyrase; topoiso 91.2 0.49 1.7E-05 53.0 8.9 80 341-420 118-204 (1104)
181 3hjh_A Transcription-repair-co 91.2 0.72 2.5E-05 46.5 9.4 65 344-420 382-446 (483)
182 1nlf_A Regulatory protein REPA 91.1 0.94 3.2E-05 42.0 9.6 23 133-155 27-49 (279)
183 1n0w_A DNA repair protein RAD5 91.1 0.78 2.7E-05 41.2 8.8 21 135-155 23-43 (243)
184 2ehv_A Hypothetical protein PH 91.1 0.22 7.4E-06 45.3 5.0 42 245-286 134-180 (251)
185 3ber_A Probable ATP-dependent 90.8 1.2 4.1E-05 40.5 9.8 72 344-419 111-193 (249)
186 1t6n_A Probable ATP-dependent 90.8 0.78 2.7E-05 40.6 8.4 71 345-418 83-164 (220)
187 1oyw_A RECQ helicase, ATP-depe 90.8 0.85 2.9E-05 46.6 9.6 60 343-402 64-123 (523)
188 3cf2_A TER ATPase, transitiona 90.6 0.35 1.2E-05 51.9 6.6 57 96-153 471-528 (806)
189 1ls1_A Signal recognition part 90.3 2.4 8.1E-05 39.7 11.5 52 245-296 179-231 (295)
190 2v1x_A ATP-dependent DNA helic 89.9 0.89 3.1E-05 47.2 9.0 60 343-402 83-144 (591)
191 2chq_A Replication factor C sm 89.8 0.4 1.4E-05 45.2 5.9 17 138-154 40-56 (319)
192 1qvr_A CLPB protein; coiled co 89.8 0.51 1.8E-05 51.5 7.4 24 137-161 192-215 (854)
193 1xp8_A RECA protein, recombina 89.7 0.51 1.7E-05 45.8 6.5 38 136-181 74-111 (366)
194 2z43_A DNA repair and recombin 89.6 0.79 2.7E-05 43.6 7.7 66 128-195 94-165 (324)
195 3m6a_A ATP-dependent protease 89.4 0.44 1.5E-05 49.0 6.1 20 135-154 107-126 (543)
196 3co5_A Putative two-component 89.1 0.33 1.1E-05 40.0 4.0 20 133-152 24-43 (143)
197 1u94_A RECA protein, recombina 89.0 0.28 9.5E-06 47.5 4.0 37 136-180 63-99 (356)
198 3hr8_A Protein RECA; alpha and 88.9 0.32 1.1E-05 46.9 4.4 39 136-182 61-99 (356)
199 2hjv_A ATP-dependent RNA helic 88.8 1.3 4.5E-05 37.2 7.8 74 172-255 35-112 (163)
200 4a1f_A DNAB helicase, replicat 88.7 0.36 1.2E-05 46.2 4.5 37 136-180 46-82 (338)
201 4a74_A DNA repair and recombin 88.5 1.1 3.7E-05 39.9 7.4 19 135-153 24-42 (231)
202 1r6b_X CLPA protein; AAA+, N-t 88.2 2.3 7.9E-05 45.6 11.0 19 136-154 207-225 (758)
203 4b4t_M 26S protease regulatory 88.1 0.48 1.6E-05 47.0 5.1 56 95-153 174-232 (434)
204 2rb4_A ATP-dependent RNA helic 87.9 1.8 6.2E-05 36.7 8.2 73 172-254 34-110 (175)
205 1vma_A Cell division protein F 87.6 5.9 0.0002 37.2 12.1 17 138-154 106-122 (306)
206 2oxc_A Probable ATP-dependent 87.4 1.1 3.7E-05 40.1 6.7 70 344-418 92-172 (230)
207 3cmu_A Protein RECA, recombina 87.2 1 3.5E-05 53.0 7.8 46 135-189 1080-1125(2050)
208 3io5_A Recombination and repai 87.1 0.77 2.6E-05 43.3 5.5 90 138-259 30-124 (333)
209 1xti_A Probable ATP-dependent 86.7 2.1 7.1E-05 41.4 8.9 72 344-418 76-158 (391)
210 3jvv_A Twitching mobility prot 86.6 0.81 2.8E-05 44.2 5.6 18 135-152 122-139 (356)
211 2eyu_A Twitching motility prot 86.6 0.45 1.5E-05 43.8 3.6 20 133-152 22-41 (261)
212 1fuk_A Eukaryotic initiation f 86.6 1.8 6.1E-05 36.4 7.3 74 172-255 30-107 (165)
213 3e70_C DPA, signal recognition 86.5 1.4 4.8E-05 41.9 7.2 54 246-299 211-265 (328)
214 2jgn_A DBX, DDX3, ATP-dependen 86.4 1.8 6.2E-05 37.2 7.3 72 172-253 46-121 (185)
215 3fe2_A Probable ATP-dependent 86.0 4.5 0.00015 36.2 10.2 72 344-419 102-183 (242)
216 3u4q_B ATP-dependent helicase/ 85.9 1.6 5.5E-05 49.4 8.5 89 139-257 4-92 (1166)
217 3eaq_A Heat resistant RNA depe 85.8 2.2 7.6E-05 37.6 7.7 71 172-252 31-105 (212)
218 3iuy_A Probable ATP-dependent 85.5 2.6 9E-05 37.3 8.3 72 343-418 93-173 (228)
219 2pl3_A Probable ATP-dependent 85.1 3.3 0.00011 36.9 8.7 71 343-418 96-177 (236)
220 1v5w_A DMC1, meiotic recombina 84.9 1.7 5.8E-05 41.6 7.0 65 129-195 110-180 (343)
221 3pxi_A Negative regulator of g 84.9 3.4 0.00012 44.3 10.1 17 138-154 523-539 (758)
222 1t5i_A C_terminal domain of A 84.5 3.1 0.00011 35.2 7.8 74 172-255 31-108 (172)
223 3cmw_A Protein RECA, recombina 84.5 1.3 4.4E-05 51.5 6.7 89 137-260 1432-1523(1706)
224 3cf2_A TER ATPase, transitiona 84.2 1.3 4.4E-05 47.5 6.3 17 137-153 239-255 (806)
225 4b4t_L 26S protease subunit RP 84.2 0.87 3E-05 45.2 4.6 19 136-154 215-233 (437)
226 1e9r_A Conjugal transfer prote 84.1 1 3.6E-05 44.7 5.3 43 136-186 53-95 (437)
227 3bor_A Human initiation factor 84.1 3 0.0001 37.3 8.0 72 344-418 98-179 (237)
228 2ffh_A Protein (FFH); SRP54, s 83.6 9.8 0.00034 37.4 11.9 18 138-155 100-117 (425)
229 1vec_A ATP-dependent RNA helic 83.2 3.4 0.00012 35.8 7.8 71 344-418 71-152 (206)
230 1p9r_A General secretion pathw 83.2 2.1 7.3E-05 42.2 7.0 27 126-152 155-183 (418)
231 2i4i_A ATP-dependent RNA helic 83.0 5 0.00017 39.1 9.8 72 171-252 275-350 (417)
232 3gk5_A Uncharacterized rhodane 82.9 1.3 4.5E-05 34.3 4.3 46 334-379 45-90 (108)
233 1ypw_A Transitional endoplasmi 82.4 3.3 0.00011 44.7 8.7 19 135-153 237-255 (806)
234 1pzn_A RAD51, DNA repair and r 82.2 2.1 7.1E-05 41.1 6.4 27 129-155 119-150 (349)
235 2j37_W Signal recognition part 82.1 4.2 0.00014 41.1 8.7 35 138-180 103-137 (504)
236 2i1q_A DNA repair and recombin 82.0 1.4 4.8E-05 41.8 5.0 68 128-195 85-166 (322)
237 3g5j_A Putative ATP/GTP bindin 81.4 2 6.8E-05 34.4 5.1 49 332-380 76-126 (134)
238 1qde_A EIF4A, translation init 81.3 1.6 5.6E-05 38.6 5.0 71 343-418 81-161 (224)
239 1wrb_A DJVLGB; RNA helicase, D 81.0 17 0.0006 32.4 12.0 70 345-418 101-180 (253)
240 2gxq_A Heat resistant RNA depe 80.9 4.6 0.00016 34.9 7.8 71 344-418 72-150 (207)
241 1wp9_A ATP-dependent RNA helic 80.9 4.6 0.00016 40.0 8.8 71 343-418 51-131 (494)
242 3i32_A Heat resistant RNA depe 80.5 3.7 0.00013 38.4 7.3 74 172-255 28-105 (300)
243 1gku_B Reverse gyrase, TOP-RG; 80.1 3.7 0.00013 45.8 8.3 74 343-418 98-181 (1054)
244 3ly5_A ATP-dependent RNA helic 79.3 11 0.00039 34.1 10.2 71 344-418 126-207 (262)
245 3i5x_A ATP-dependent RNA helic 79.0 14 0.0005 37.6 12.0 77 172-255 339-419 (563)
246 3b85_A Phosphate starvation-in 78.9 2.2 7.4E-05 37.6 4.8 30 123-152 9-38 (208)
247 2yhs_A FTSY, cell division pro 78.1 4.3 0.00015 40.8 7.2 54 246-299 375-435 (503)
248 3hws_A ATP-dependent CLP prote 78.0 3.6 0.00012 39.6 6.6 20 135-154 50-69 (363)
249 1lv7_A FTSH; alpha/beta domain 77.9 3 0.0001 37.8 5.7 18 136-153 45-62 (257)
250 1j8m_F SRP54, signal recogniti 77.9 11 0.00036 35.2 9.6 18 138-155 100-117 (297)
251 2oap_1 GSPE-2, type II secreti 77.3 2 7E-05 43.6 4.7 39 112-152 237-276 (511)
252 2bjv_A PSP operon transcriptio 76.8 2 6.7E-05 39.3 4.1 20 134-153 27-46 (265)
253 1xwi_A SKD1 protein; VPS4B, AA 76.7 4.3 0.00015 38.4 6.6 52 97-154 7-63 (322)
254 4ag6_A VIRB4 ATPase, type IV s 76.7 2.6 8.7E-05 41.2 5.1 41 135-183 34-74 (392)
255 1q0u_A Bstdead; DEAD protein, 76.7 1.4 4.6E-05 39.0 2.9 71 344-418 72-156 (219)
256 2zts_A Putative uncharacterize 76.4 1.7 5.7E-05 39.1 3.5 52 136-195 30-81 (251)
257 3flh_A Uncharacterized protein 76.4 2.2 7.5E-05 33.9 3.8 46 334-379 61-108 (124)
258 3b9p_A CG5977-PA, isoform A; A 76.2 4.6 0.00016 37.4 6.6 19 136-154 54-72 (297)
259 3sqw_A ATP-dependent RNA helic 76.1 18 0.00063 37.1 11.8 78 172-256 288-369 (579)
260 3nwn_A Kinesin-like protein KI 75.7 2 6.8E-05 41.3 3.9 25 129-153 96-122 (359)
261 4f4c_A Multidrug resistance pr 75.6 1.1 3.9E-05 51.2 2.5 41 244-284 1233-1273(1321)
262 1yks_A Genome polyprotein [con 74.9 3.6 0.00012 40.9 5.7 69 172-252 177-246 (440)
263 1wv9_A Rhodanese homolog TT165 74.9 3.8 0.00013 30.5 4.6 39 340-379 50-88 (94)
264 1kgd_A CASK, peripheral plasma 74.8 1.8 6.2E-05 37.0 3.1 18 135-152 4-21 (180)
265 1gmx_A GLPE protein; transfera 74.7 3.4 0.00012 31.7 4.4 44 336-379 50-94 (108)
266 2x8a_A Nuclear valosin-contain 74.6 0.9 3.1E-05 42.1 1.1 53 97-152 5-60 (274)
267 3bh0_A DNAB-like replicative h 74.6 3.1 0.0001 39.3 4.9 38 135-180 67-104 (315)
268 3vaa_A Shikimate kinase, SK; s 74.5 1.9 6.6E-05 37.4 3.2 20 135-154 24-43 (199)
269 3nbx_X ATPase RAVA; AAA+ ATPas 74.4 1.7 6E-05 43.9 3.3 26 127-152 32-57 (500)
270 2d7d_A Uvrabc system protein B 74.2 25 0.00087 36.8 12.3 78 172-259 445-526 (661)
271 3fht_A ATP-dependent RNA helic 74.2 7.3 0.00025 37.7 7.8 73 172-254 266-342 (412)
272 1qhx_A CPT, protein (chloramph 74.2 1.5 5.2E-05 37.1 2.4 19 136-154 3-21 (178)
273 3a8t_A Adenylate isopentenyltr 74.1 1.7 5.9E-05 41.3 2.9 18 137-154 41-58 (339)
274 1ofh_A ATP-dependent HSL prote 74.1 6.7 0.00023 36.3 7.2 19 136-154 50-68 (310)
275 2r44_A Uncharacterized protein 74.1 1.6 5.6E-05 41.3 2.9 22 132-153 42-63 (331)
276 2jtq_A Phage shock protein E; 74.1 6.9 0.00023 28.4 5.8 43 336-379 31-76 (85)
277 1tf7_A KAIC; homohexamer, hexa 74.0 11 0.00038 38.3 9.3 52 134-194 279-330 (525)
278 2r8r_A Sensor protein; KDPD, P 73.7 3.3 0.00011 36.9 4.5 18 138-155 8-25 (228)
279 1bg2_A Kinesin; motor protein, 73.6 2.5 8.5E-05 40.1 3.9 25 129-153 69-95 (325)
280 1u0j_A DNA replication protein 73.5 6.8 0.00023 35.8 6.7 44 108-154 73-122 (267)
281 3lw7_A Adenylate kinase relate 73.0 1.6 5.4E-05 36.6 2.3 17 138-154 3-19 (179)
282 1f9v_A Kinesin-like protein KA 73.0 2.5 8.5E-05 40.5 3.8 26 128-153 75-102 (347)
283 3t0q_A AGR253WP; kinesin, alph 73.0 2.5 8.4E-05 40.6 3.8 26 128-153 76-103 (349)
284 3trf_A Shikimate kinase, SK; a 73.0 2.2 7.4E-05 36.4 3.1 20 136-155 5-24 (185)
285 3dc4_A Kinesin-like protein NO 72.9 2.3 7.9E-05 40.6 3.5 25 129-153 86-112 (344)
286 2gza_A Type IV secretion syste 72.8 2.4 8.2E-05 40.9 3.7 20 133-152 172-191 (361)
287 1v8k_A Kinesin-like protein KI 72.7 2.6 8.7E-05 41.3 3.8 24 130-153 147-172 (410)
288 3iwh_A Rhodanese-like domain p 72.7 2.4 8.3E-05 32.5 3.0 39 340-378 52-90 (103)
289 2qmh_A HPR kinase/phosphorylas 72.6 1.8 6.2E-05 37.8 2.4 18 136-153 34-51 (205)
290 3pey_A ATP-dependent RNA helic 72.5 8.5 0.00029 36.9 7.7 76 172-257 243-322 (395)
291 1fuu_A Yeast initiation factor 72.5 10 0.00034 36.5 8.2 71 343-418 88-168 (394)
292 3iij_A Coilin-interacting nucl 72.3 2 7E-05 36.5 2.8 21 134-154 9-29 (180)
293 4etp_A Kinesin-like protein KA 72.3 2.8 9.7E-05 41.0 4.1 25 129-153 132-158 (403)
294 2h58_A Kinesin-like protein KI 72.1 2.8 9.6E-05 39.8 3.9 26 128-153 71-98 (330)
295 4a2p_A RIG-I, retinoic acid in 72.1 5 0.00017 40.9 6.2 71 344-418 55-136 (556)
296 3b6u_A Kinesin-like protein KI 72.1 2.8 9.5E-05 40.5 3.9 25 129-153 93-119 (372)
297 1ixz_A ATP-dependent metallopr 72.1 1.7 5.9E-05 39.4 2.4 54 97-153 11-66 (254)
298 1hv8_A Putative ATP-dependent 72.1 9.3 0.00032 36.2 7.8 73 172-254 238-314 (367)
299 2nr8_A Kinesin-like protein KI 72.0 2.8 9.6E-05 40.3 3.9 26 128-153 94-121 (358)
300 2vvg_A Kinesin-2; motor protei 71.8 2.9 9.8E-05 40.1 3.9 24 130-153 82-107 (350)
301 1t5c_A CENP-E protein, centrom 71.8 2.9 9.7E-05 40.1 3.9 25 129-153 69-95 (349)
302 3foj_A Uncharacterized protein 71.7 2.6 8.9E-05 31.9 3.0 39 341-379 53-91 (100)
303 2zfi_A Kinesin-like protein KI 71.4 2.9 0.0001 40.3 3.9 25 129-153 81-107 (366)
304 2y65_A Kinesin, kinesin heavy 71.3 3 0.0001 40.2 3.9 24 130-153 77-102 (365)
305 4a14_A Kinesin, kinesin-like p 71.3 3 0.0001 39.9 3.9 25 129-153 75-101 (344)
306 2qor_A Guanylate kinase; phosp 71.3 1.9 6.4E-05 37.7 2.4 21 133-153 9-29 (204)
307 1goj_A Kinesin, kinesin heavy 71.3 2.9 0.0001 40.1 3.8 24 130-153 73-98 (355)
308 3foz_A TRNA delta(2)-isopenten 71.3 2.2 7.7E-05 40.0 2.9 16 139-154 13-28 (316)
309 3eme_A Rhodanese-like domain p 71.2 2.7 9.3E-05 32.0 3.0 39 341-379 53-91 (103)
310 2ze6_A Isopentenyl transferase 71.2 2.2 7.7E-05 38.8 2.9 16 139-154 4-19 (253)
311 3gbj_A KIF13B protein; kinesin 71.2 3 0.0001 40.1 3.9 25 129-153 84-110 (354)
312 1zp6_A Hypothetical protein AT 71.1 1.5 5E-05 37.8 1.6 18 135-152 8-25 (191)
313 1x88_A Kinesin-like protein KI 71.1 2.8 9.6E-05 40.3 3.7 25 129-153 80-106 (359)
314 3lre_A Kinesin-like protein KI 71.1 3 0.0001 40.1 3.8 24 130-153 98-123 (355)
315 1c4o_A DNA nucleotide excision 70.8 19 0.00063 37.8 10.3 77 172-258 439-519 (664)
316 1ojl_A Transcriptional regulat 70.7 3 0.0001 39.2 3.8 19 135-153 24-42 (304)
317 2c9o_A RUVB-like 1; hexameric 70.7 4.1 0.00014 40.7 5.0 19 136-154 63-81 (456)
318 3exa_A TRNA delta(2)-isopenten 70.7 2.2 7.5E-05 40.2 2.7 17 138-154 5-21 (322)
319 3tau_A Guanylate kinase, GMP k 70.6 2.7 9.1E-05 36.9 3.2 18 135-152 7-24 (208)
320 3b5x_A Lipid A export ATP-bind 70.2 11 0.00037 39.0 8.2 42 244-286 496-537 (582)
321 1lvg_A Guanylate kinase, GMP k 70.1 2.8 9.5E-05 36.5 3.2 18 135-152 3-20 (198)
322 1y63_A LMAJ004144AAA protein; 69.8 2.2 7.6E-05 36.5 2.5 20 135-154 9-28 (184)
323 2heh_A KIF2C protein; kinesin, 69.8 3.1 0.00011 40.4 3.7 24 130-153 127-152 (387)
324 2pt7_A CAG-ALFA; ATPase, prote 69.8 2.3 7.7E-05 40.5 2.7 20 133-152 168-187 (330)
325 2wbe_C Bipolar kinesin KRP-130 69.6 3 0.0001 40.3 3.5 24 129-152 92-117 (373)
326 1kht_A Adenylate kinase; phosp 69.5 2.2 7.6E-05 36.4 2.4 19 136-154 3-21 (192)
327 3d8b_A Fidgetin-like protein 1 69.4 6.6 0.00023 37.7 6.0 19 136-154 117-135 (357)
328 3dkp_A Probable ATP-dependent 69.3 3.4 0.00012 37.1 3.7 73 344-419 98-182 (245)
329 2j0s_A ATP-dependent RNA helic 69.2 9.8 0.00034 36.9 7.4 73 172-254 276-352 (410)
330 2j41_A Guanylate kinase; GMP, 69.1 2.9 9.8E-05 36.3 3.1 20 134-153 4-23 (207)
331 3cob_A Kinesin heavy chain-lik 68.9 3 0.0001 40.3 3.3 25 129-153 71-97 (369)
332 3kb2_A SPBC2 prophage-derived 68.6 2.2 7.6E-05 35.7 2.2 17 138-154 3-19 (173)
333 1iy2_A ATP-dependent metallopr 68.6 2.3 7.7E-05 39.3 2.4 17 137-153 74-90 (278)
334 3u06_A Protein claret segregat 68.6 3.6 0.00012 40.3 3.9 26 128-153 129-156 (412)
335 2ewv_A Twitching motility prot 68.5 2.5 8.7E-05 40.9 2.8 19 134-152 134-152 (372)
336 3ipz_A Monothiol glutaredoxin- 68.5 21 0.0007 27.3 7.7 64 335-398 8-77 (109)
337 1kag_A SKI, shikimate kinase I 68.2 3.5 0.00012 34.6 3.3 18 136-153 4-21 (173)
338 1s2m_A Putative ATP-dependent 68.2 14 0.00049 35.5 8.3 71 344-418 89-169 (400)
339 2owm_A Nckin3-434, related to 68.1 3.7 0.00013 40.7 3.9 24 130-153 129-154 (443)
340 1ly1_A Polynucleotide kinase; 68.1 2.4 8.1E-05 35.8 2.2 16 138-153 4-19 (181)
341 2rep_A Kinesin-like protein KI 67.9 3.7 0.00013 39.7 3.8 25 129-153 107-133 (376)
342 2yjt_D ATP-dependent RNA helic 70.9 1.1 3.8E-05 37.9 0.0 73 172-254 30-106 (170)
343 1nks_A Adenylate kinase; therm 67.3 8.4 0.00029 32.7 5.7 17 138-154 3-19 (194)
344 3ney_A 55 kDa erythrocyte memb 67.2 3.4 0.00012 36.0 3.1 18 135-152 18-35 (197)
345 3crm_A TRNA delta(2)-isopenten 67.2 3 0.0001 39.4 2.9 17 138-154 7-23 (323)
346 3bgw_A DNAB-like replicative h 67.0 5.4 0.00019 39.6 4.9 44 129-180 186-233 (444)
347 3bfn_A Kinesin-like protein KI 67.0 3.2 0.00011 40.3 3.1 23 131-153 92-116 (388)
348 3tr0_A Guanylate kinase, GMP k 66.8 3.6 0.00012 35.6 3.2 18 135-152 6-23 (205)
349 2db3_A ATP-dependent RNA helic 66.8 16 0.00055 35.9 8.4 68 175-252 303-374 (434)
350 1um8_A ATP-dependent CLP prote 66.7 12 0.0004 36.1 7.2 19 136-154 72-90 (376)
351 1ex7_A Guanylate kinase; subst 66.4 3 0.0001 36.0 2.5 16 137-152 2-17 (186)
352 3t15_A Ribulose bisphosphate c 65.8 3.3 0.00011 38.6 2.9 18 137-154 37-54 (293)
353 4eun_A Thermoresistant glucoki 65.8 3 0.0001 36.2 2.5 19 135-153 28-46 (200)
354 1sky_E F1-ATPase, F1-ATP synth 65.7 9.4 0.00032 38.0 6.2 22 133-154 148-169 (473)
355 1cr0_A DNA primase/helicase; R 65.5 5.9 0.0002 36.8 4.6 22 134-155 33-54 (296)
356 1knq_A Gluconate kinase; ALFA/ 64.9 2.7 9.3E-05 35.4 2.0 19 136-154 8-26 (175)
357 1tf5_A Preprotein translocase 64.9 28 0.00096 37.3 10.0 71 342-418 122-209 (844)
358 3a00_A Guanylate kinase, GMP k 64.9 4.3 0.00015 34.7 3.3 16 137-152 2-17 (186)
359 4gp7_A Metallophosphoesterase; 64.7 2.8 9.4E-05 35.5 2.0 18 135-152 8-25 (171)
360 3cm0_A Adenylate kinase; ATP-b 64.6 2.3 8E-05 36.2 1.5 19 136-154 4-22 (186)
361 1z6g_A Guanylate kinase; struc 64.4 4.5 0.00016 35.7 3.4 19 134-152 21-39 (218)
362 3d3q_A TRNA delta(2)-isopenten 64.4 3.7 0.00013 39.1 2.9 17 138-154 9-25 (340)
363 4f4c_A Multidrug resistance pr 64.2 9.4 0.00032 43.7 6.8 41 244-284 570-610 (1321)
364 1xjc_A MOBB protein homolog; s 64.1 7.3 0.00025 32.9 4.5 24 138-162 6-29 (169)
365 2ius_A DNA translocase FTSK; n 64.1 9.6 0.00033 38.5 6.1 17 136-152 167-183 (512)
366 2r2a_A Uncharacterized protein 63.9 4.6 0.00016 35.2 3.3 17 139-155 8-24 (199)
367 1rj9_A FTSY, signal recognitio 63.9 6.6 0.00023 36.7 4.6 17 136-152 102-118 (304)
368 3zyw_A Glutaredoxin-3; metal b 63.7 24 0.00082 27.2 7.2 65 335-399 6-76 (111)
369 1w36_B RECB, exodeoxyribonucle 63.6 13 0.00044 42.1 7.7 57 138-194 18-78 (1180)
370 2yan_A Glutaredoxin-3; oxidore 63.5 33 0.0011 25.8 8.0 62 338-399 10-77 (105)
371 3pxg_A Negative regulator of g 63.3 8.3 0.00028 38.6 5.5 25 136-161 201-225 (468)
372 3nwj_A ATSK2; P loop, shikimat 63.1 5.2 0.00018 36.3 3.6 21 134-154 46-66 (250)
373 3t61_A Gluconokinase; PSI-biol 63.0 3.3 0.00011 35.9 2.3 18 137-154 19-36 (202)
374 2wv9_A Flavivirin protease NS2 62.7 8.4 0.00029 40.5 5.6 68 172-251 410-478 (673)
375 3mm4_A Histidine kinase homolo 62.7 72 0.0025 27.2 12.1 127 134-287 18-161 (206)
376 2c95_A Adenylate kinase 1; tra 62.6 4.1 0.00014 34.9 2.7 20 135-154 8-27 (196)
377 1zuh_A Shikimate kinase; alpha 62.5 4.5 0.00016 33.7 3.0 19 137-155 8-26 (168)
378 2v6i_A RNA helicase; membrane, 62.5 9.5 0.00032 37.6 5.7 67 172-250 171-238 (431)
379 2bdt_A BH3686; alpha-beta prot 62.4 3.5 0.00012 35.3 2.3 16 138-153 4-19 (189)
380 1s96_A Guanylate kinase, GMP k 62.4 3.8 0.00013 36.3 2.5 20 133-152 13-32 (219)
381 3hix_A ALR3790 protein; rhodan 62.3 6.8 0.00023 29.9 3.7 40 340-379 48-88 (106)
382 2rhm_A Putative kinase; P-loop 62.2 3.5 0.00012 35.2 2.2 18 137-154 6-23 (193)
383 3eiq_A Eukaryotic initiation f 62.1 19 0.00064 34.8 7.8 73 343-418 107-189 (414)
384 1f2t_A RAD50 ABC-ATPase; DNA d 62.1 5.5 0.00019 32.8 3.3 14 139-152 26-39 (149)
385 1tue_A Replication protein E1; 62.0 3.8 0.00013 35.9 2.3 16 138-153 60-75 (212)
386 2xau_A PRE-mRNA-splicing facto 62.0 16 0.00056 39.0 7.8 75 172-252 303-393 (773)
387 4akg_A Glutathione S-transfera 61.9 11 0.00039 46.0 7.0 48 106-154 890-941 (2695)
388 3kta_A Chromosome segregation 61.8 5.2 0.00018 33.8 3.3 15 138-152 28-42 (182)
389 3tbk_A RIG-I helicase domain; 61.8 9 0.00031 38.8 5.6 71 344-418 52-133 (555)
390 1znw_A Guanylate kinase, GMP k 61.7 5.1 0.00017 34.9 3.2 21 132-152 16-36 (207)
391 3o8b_A HCV NS3 protease/helica 61.6 11 0.00038 39.4 6.2 66 172-251 396-461 (666)
392 3eph_A TRNA isopentenyltransfe 61.6 4.3 0.00015 39.6 2.9 17 139-155 5-21 (409)
393 4a2q_A RIG-I, retinoic acid in 61.5 15 0.0005 39.6 7.4 71 344-418 296-377 (797)
394 1tev_A UMP-CMP kinase; ploop, 61.3 3.3 0.00011 35.4 1.9 18 137-154 4-21 (196)
395 2yvu_A Probable adenylyl-sulfa 61.1 7.7 0.00026 32.9 4.2 19 136-154 13-31 (186)
396 1ye8_A Protein THEP1, hypothet 61.0 5.7 0.0002 33.8 3.3 15 138-152 2-16 (178)
397 2fsf_A Preprotein translocase 60.9 21 0.0007 38.3 8.1 81 332-418 103-200 (853)
398 1gvn_B Zeta; postsegregational 60.7 3.6 0.00012 38.2 2.1 17 138-154 35-51 (287)
399 3c8u_A Fructokinase; YP_612366 60.5 5 0.00017 35.0 2.9 17 136-152 22-38 (208)
400 3fmo_B ATP-dependent RNA helic 60.4 10 0.00035 35.3 5.3 67 346-419 164-242 (300)
401 1tq1_A AT5G66040, senescence-a 60.3 6 0.0002 31.6 3.1 39 341-379 79-118 (129)
402 1via_A Shikimate kinase; struc 60.2 5.7 0.0002 33.4 3.2 18 137-154 5-22 (175)
403 3fb4_A Adenylate kinase; psych 60.2 4 0.00014 35.8 2.3 18 138-155 2-19 (216)
404 3uie_A Adenylyl-sulfate kinase 59.8 4.8 0.00016 34.8 2.7 20 135-154 24-43 (200)
405 1qxn_A SUD, sulfide dehydrogen 59.7 8.9 0.0003 30.9 4.1 40 340-379 78-118 (137)
406 2k0z_A Uncharacterized protein 59.6 15 0.0005 28.2 5.3 39 341-379 53-91 (110)
407 2v54_A DTMP kinase, thymidylat 59.5 4 0.00014 35.2 2.1 19 136-154 4-22 (204)
408 1m7g_A Adenylylsulfate kinase; 59.5 6.5 0.00022 34.3 3.5 31 123-154 13-43 (211)
409 3f9v_A Minichromosome maintena 59.5 4.9 0.00017 41.6 3.1 15 138-152 329-343 (595)
410 2i3b_A HCR-ntpase, human cance 59.4 7.2 0.00025 33.6 3.7 41 244-287 103-145 (189)
411 2r62_A Cell division protease 59.4 2.8 9.4E-05 38.3 1.1 19 136-154 44-62 (268)
412 4fcw_A Chaperone protein CLPB; 59.3 4.9 0.00017 37.4 2.9 17 138-154 49-65 (311)
413 1ak2_A Adenylate kinase isoenz 59.3 5.6 0.00019 35.4 3.1 20 136-155 16-35 (233)
414 2iut_A DNA translocase FTSK; n 59.2 13 0.00045 38.0 6.1 41 137-181 215-255 (574)
415 1in4_A RUVB, holliday junction 59.1 5.5 0.00019 37.8 3.2 17 137-153 52-68 (334)
416 2f3j_A RNA and export factor b 58.9 21 0.00071 30.2 6.5 8 48-55 67-74 (177)
417 2iyv_A Shikimate kinase, SK; t 58.9 5.1 0.00017 34.0 2.7 18 137-154 3-20 (184)
418 3dl0_A Adenylate kinase; phosp 58.9 4.3 0.00015 35.6 2.3 17 138-154 2-18 (216)
419 3gx8_A Monothiol glutaredoxin- 58.8 48 0.0017 25.8 8.3 53 336-388 7-68 (121)
420 2v9p_A Replication protein E1; 58.6 6 0.0002 37.1 3.2 18 135-152 125-142 (305)
421 3b9q_A Chloroplast SRP recepto 58.5 6.7 0.00023 36.7 3.6 17 136-152 100-116 (302)
422 1e6c_A Shikimate kinase; phosp 58.4 4.6 0.00016 33.8 2.2 18 137-154 3-20 (173)
423 2jlq_A Serine protease subunit 58.3 11 0.00039 37.3 5.5 68 172-251 188-256 (451)
424 1qf9_A UMP/CMP kinase, protein 58.3 4.5 0.00015 34.4 2.2 17 138-154 8-24 (194)
425 2bwj_A Adenylate kinase 5; pho 58.2 4.5 0.00015 34.7 2.2 19 136-154 12-30 (199)
426 3sr0_A Adenylate kinase; phosp 58.1 5.9 0.0002 34.7 2.9 17 139-155 3-19 (206)
427 1zd8_A GTP:AMP phosphotransfer 57.9 4.5 0.00016 35.8 2.2 18 137-154 8-25 (227)
428 1zak_A Adenylate kinase; ATP:A 57.7 5.2 0.00018 35.3 2.6 18 137-154 6-23 (222)
429 1ry6_A Internal kinesin; kines 57.2 7 0.00024 37.5 3.5 19 135-153 82-102 (360)
430 2cdn_A Adenylate kinase; phosp 57.2 4.8 0.00017 34.8 2.2 18 137-154 21-38 (201)
431 2lci_A Protein OR36; structura 57.2 54 0.0019 24.0 10.1 79 324-402 31-109 (134)
432 1zu4_A FTSY; GTPase, signal re 57.1 10 0.00035 35.7 4.7 17 138-154 107-123 (320)
433 2oca_A DAR protein, ATP-depend 57.0 66 0.0023 32.0 11.1 74 174-256 349-426 (510)
434 1wik_A Thioredoxin-like protei 56.9 61 0.0021 24.5 8.6 48 343-390 13-66 (109)
435 1aky_A Adenylate kinase; ATP:A 56.8 5.4 0.00018 35.1 2.5 18 137-154 5-22 (220)
436 1nij_A Hypothetical protein YJ 56.6 7.6 0.00026 36.6 3.7 14 139-152 7-20 (318)
437 2zan_A Vacuolar protein sortin 56.5 5.8 0.0002 39.4 2.9 56 96-154 128-185 (444)
438 2pt5_A Shikimate kinase, SK; a 56.2 5.3 0.00018 33.2 2.2 17 138-154 2-18 (168)
439 2pez_A Bifunctional 3'-phospho 56.1 4.8 0.00017 34.0 2.0 18 136-153 5-22 (179)
440 2fsx_A RV0390, COG0607: rhodan 56.1 13 0.00045 30.2 4.7 38 342-379 78-116 (148)
441 3umf_A Adenylate kinase; rossm 56.0 6.6 0.00023 34.7 2.9 19 137-155 30-48 (217)
442 1ukz_A Uridylate kinase; trans 56.0 5.2 0.00018 34.6 2.3 16 138-153 17-32 (203)
443 3vkg_A Dynein heavy chain, cyt 55.8 26 0.00088 43.6 8.6 47 107-154 874-924 (3245)
444 3l9o_A ATP-dependent RNA helic 55.6 12 0.00041 41.9 5.5 71 337-418 220-296 (1108)
445 1jjv_A Dephospho-COA kinase; P 55.5 5.4 0.00018 34.6 2.3 15 139-153 5-19 (206)
446 3p32_A Probable GTPase RV1496/ 55.5 77 0.0026 30.0 10.7 16 138-153 81-96 (355)
447 2plr_A DTMP kinase, probable t 55.4 4.7 0.00016 35.0 1.9 19 136-154 4-22 (213)
448 2jaq_A Deoxyguanosine kinase; 55.4 5.4 0.00018 34.3 2.3 17 138-154 2-18 (205)
449 1htw_A HI0065; nucleotide-bind 55.1 6.8 0.00023 32.6 2.7 18 135-152 32-49 (158)
450 1g8p_A Magnesium-chelatase 38 55.1 3.7 0.00013 39.0 1.2 19 136-154 45-63 (350)
451 1cke_A CK, MSSA, protein (cyti 55.0 6.9 0.00024 34.4 2.9 18 137-154 6-23 (227)
452 3asz_A Uridine kinase; cytidin 54.9 5.5 0.00019 34.6 2.2 17 137-153 7-23 (211)
453 3lnc_A Guanylate kinase, GMP k 54.8 5.2 0.00018 35.5 2.1 19 134-152 25-43 (231)
454 2qt1_A Nicotinamide riboside k 54.7 3.8 0.00013 35.7 1.1 19 135-153 20-38 (207)
455 2whx_A Serine protease/ntpase/ 54.7 20 0.00067 37.3 6.7 68 172-251 355-423 (618)
456 2if2_A Dephospho-COA kinase; a 54.5 5.7 0.00019 34.4 2.2 16 138-153 3-18 (204)
457 3b6e_A Interferon-induced heli 54.4 6.6 0.00022 34.1 2.7 54 344-401 82-139 (216)
458 3nhv_A BH2092 protein; alpha-b 54.3 7.1 0.00024 31.9 2.7 38 342-379 70-109 (144)
459 1e4v_A Adenylate kinase; trans 54.2 5.7 0.0002 34.7 2.2 17 138-154 2-18 (214)
460 3k1j_A LON protease, ATP-depen 54.1 11 0.00036 39.2 4.6 23 132-154 56-78 (604)
461 2pbr_A DTMP kinase, thymidylat 53.9 5.9 0.0002 33.7 2.3 16 139-154 3-18 (195)
462 3rc3_A ATP-dependent RNA helic 53.8 28 0.00094 36.6 7.7 73 175-258 323-401 (677)
463 2og2_A Putative signal recogni 53.8 8.6 0.00029 36.9 3.5 16 138-153 159-174 (359)
464 2wwf_A Thymidilate kinase, put 53.5 6.5 0.00022 34.1 2.5 19 136-154 10-28 (212)
465 1vee_A Proline-rich protein fa 53.4 16 0.00055 29.1 4.7 37 343-379 73-110 (134)
466 2z0h_A DTMP kinase, thymidylat 52.9 6.3 0.00021 33.7 2.3 17 139-155 3-19 (197)
467 2v3c_C SRP54, signal recogniti 52.7 9.1 0.00031 37.8 3.6 19 137-155 100-118 (432)
468 3qf7_A RAD50; ABC-ATPase, ATPa 52.5 8.4 0.00029 37.1 3.3 16 138-153 25-40 (365)
469 4gl2_A Interferon-induced heli 52.4 2.8 9.7E-05 44.3 -0.1 70 345-418 57-142 (699)
470 3dmn_A Putative DNA helicase; 52.4 1E+02 0.0034 25.6 11.9 81 326-421 42-123 (174)
471 3tqc_A Pantothenate kinase; bi 52.4 23 0.0008 33.2 6.3 23 139-163 95-117 (321)
472 3tif_A Uncharacterized ABC tra 52.3 6 0.0002 35.5 2.0 17 135-151 30-46 (235)
473 1g41_A Heat shock protein HSLU 52.3 8.2 0.00028 38.2 3.2 19 136-154 50-68 (444)
474 2vli_A Antibiotic resistance p 52.3 4.8 0.00016 34.0 1.3 19 136-154 5-23 (183)
475 1nn5_A Similar to deoxythymidy 52.3 7.1 0.00024 33.9 2.5 20 136-155 9-28 (215)
476 3a4m_A L-seryl-tRNA(SEC) kinas 52.1 6.4 0.00022 35.8 2.2 17 138-154 6-22 (260)
477 2ce7_A Cell division protein F 52.1 6.1 0.00021 39.6 2.2 17 137-153 50-66 (476)
478 3cmw_A Protein RECA, recombina 52.0 16 0.00055 42.5 5.9 39 136-182 34-72 (1706)
479 2wem_A Glutaredoxin-related pr 52.0 33 0.0011 26.8 6.1 62 338-399 13-81 (118)
480 2xb4_A Adenylate kinase; ATP-b 51.7 6.7 0.00023 34.7 2.3 16 139-154 3-18 (223)
481 3qks_A DNA double-strand break 51.6 9.9 0.00034 33.1 3.3 15 138-152 25-39 (203)
482 2z0m_A 337AA long hypothetical 51.5 36 0.0012 31.5 7.6 70 344-418 56-135 (337)
483 4h1g_A Maltose binding protein 51.4 10 0.00036 40.1 4.1 25 129-153 454-480 (715)
484 1q57_A DNA primase/helicase; d 51.2 9.7 0.00033 38.4 3.7 49 136-192 242-290 (503)
485 3pxi_A Negative regulator of g 51.2 16 0.00055 39.0 5.5 25 136-161 201-225 (758)
486 2f1r_A Molybdopterin-guanine d 51.1 5.6 0.00019 33.7 1.6 16 138-153 4-19 (171)
487 1c9k_A COBU, adenosylcobinamid 50.8 8.9 0.0003 32.7 2.8 44 139-194 2-45 (180)
488 2wci_A Glutaredoxin-4; redox-a 50.7 35 0.0012 27.4 6.3 62 338-399 28-95 (135)
489 3ice_A Transcription terminati 50.6 37 0.0013 33.0 7.3 32 123-154 158-192 (422)
490 3auy_A DNA double-strand break 50.2 9.7 0.00033 36.7 3.3 22 139-162 28-49 (371)
491 1uf9_A TT1252 protein; P-loop, 50.1 9.3 0.00032 32.8 2.9 17 138-154 10-26 (203)
492 3be4_A Adenylate kinase; malar 50.1 9.9 0.00034 33.3 3.1 18 137-154 6-23 (217)
493 1np6_A Molybdopterin-guanine d 50.0 17 0.00059 30.7 4.5 15 138-152 8-22 (174)
494 4anj_A Unconventional myosin-V 49.9 19 0.00065 39.7 5.8 64 98-162 97-169 (1052)
495 3tlx_A Adenylate kinase 2; str 49.7 9.4 0.00032 34.3 2.9 19 137-155 30-48 (243)
496 3zq6_A Putative arsenical pump 49.4 16 0.00055 34.4 4.7 34 139-180 17-50 (324)
497 2bbw_A Adenylate kinase 4, AK4 49.2 9.6 0.00033 34.1 2.9 18 136-153 27-44 (246)
498 2hhg_A Hypothetical protein RP 49.0 12 0.00041 30.0 3.2 38 342-379 84-122 (139)
499 2cbz_A Multidrug resistance-as 48.8 7.3 0.00025 34.9 2.0 21 133-153 28-48 (237)
500 2p5t_B PEZT; postsegregational 48.8 5.6 0.00019 36.0 1.3 15 139-153 35-49 (253)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.9e-71 Score=562.96 Aligned_cols=389 Identities=41% Similarity=0.708 Sum_probs=360.5
Q ss_pred CceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCC
Q 010672 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (504)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~ 165 (504)
.+.+.+.+.|.|+.+|+++++++.+++++.+.||.+|+|+|.++||.+++++|++++||||||||++|++|++.++...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccc
Q 010672 166 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR 245 (504)
Q Consensus 166 ~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~ 245 (504)
......++++|||+||++|+.|+++++.+++...++++.+++||.....+...+..+++|+|+||++|.+++.+....+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 43344578899999999999999999999998888999999999998888888888999999999999999998888899
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhc--CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeee
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 323 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
++++||+||||+|++++|...+..++..+ +++.|+++||||+|+.+..++..++.++..+.+.... .....+.+.+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 99999999999999999999999999875 6789999999999999999999999999988887655 45566788888
Q ss_pred ecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 324 IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
.+....|...+.+++..... ++||||++++.|+.+++.|++.++.+..+||++++.+|..++++|++|+.+|||||++
T Consensus 282 ~~~~~~k~~~l~~~l~~~~~--~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp ECCGGGHHHHHHHHHHHCCT--TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred EeCcHHHHHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh
Confidence 88889999999999887543 4999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEecc-ccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010672 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA-ANARFAKELITILEEAGQKVSPELAAM 477 (504)
Q Consensus 404 ~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~l~~~ 477 (504)
+++|+|+|++++||+||+|.++++|+||+||+||.|+.|.+++|+++ .+..++.++.+.++++++++|+||.+|
T Consensus 360 ~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999999994 578899999999999999999999765
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-64 Score=513.14 Aligned_cols=395 Identities=45% Similarity=0.720 Sum_probs=356.7
Q ss_pred CceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCC
Q 010672 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (504)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~ 165 (504)
.+.+.+..+|+++.+|+++++++.+++++...||.+|+|+|.++|+.++.+++++++||||||||++|++|++.++....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred CC-------------CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHH
Q 010672 166 FL-------------APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (504)
Q Consensus 166 ~~-------------~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~ 232 (504)
.. ....++++||++||++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11234789999999999999999999998888899999999998888888888889999999999
Q ss_pred HHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc--CC--CCceEEecCCCcHHHHHHHHHhhcCCeEEEEc
Q 010672 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (504)
Q Consensus 233 l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (504)
|.+++......+.++++||+||||++.+++|...+..++... .+ ..|++++|||+++.+..++..++.++..+.+.
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999998888888999999999999999999999999998753 22 67899999999999999999999998877766
Q ss_pred CCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHH
Q 010672 309 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 388 (504)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~ 388 (504)
... .....+.+.+..+....+...+.+++.......++||||++++.++.+++.|++.++.+..+||++++++|..+++
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 242 RVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 544 4455677777788888999999999988767789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010672 389 EFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (504)
Q Consensus 389 ~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (504)
.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.|++|+++.+...+.++.+.+..+.+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcCC
Q 010672 469 KVSPELAAMGRGA 481 (504)
Q Consensus 469 ~~~~~l~~~~~~~ 481 (504)
++|.+|.+|+...
T Consensus 401 ~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 401 EVPSWLENMAYEH 413 (417)
T ss_dssp CCCHHHHHHHTCS
T ss_pred cCCHHHHHHHHhh
Confidence 9999999998754
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.4e-60 Score=483.63 Aligned_cols=374 Identities=33% Similarity=0.572 Sum_probs=335.2
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 010672 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (504)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 172 (504)
..+.+..+|+++++++.+++++.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 344567789999999999999999999999999999999999999999999999999999999999876432 236
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEE
Q 010672 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (504)
Q Consensus 173 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~ 252 (504)
+++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 78999999999999999999999988899999999999888888888888999999999999999988888889999999
Q ss_pred cCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC-hhHHH
Q 010672 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKY 331 (504)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 331 (504)
||||++.+++|...+..++..+++..|++++|||++..+.++...++.+|..+.+.... .....+.+.+..+. ...+.
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHH
T ss_pred ccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999999999999999999999998888888888877655443 23344555555444 44588
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 010672 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (504)
Q Consensus 332 ~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~ 411 (504)
..+.+++.... ..++||||++++.++.+++.|++.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 265 ~~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 265 DTLCDLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 88888887754 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHH
Q 010672 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPE 473 (504)
Q Consensus 412 ~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 473 (504)
++++||++++|+++..|+||+||+||.|+.|.+++|+++.+...++++.+.+...-.++|..
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred cCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999999999888887776666643
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.7e-59 Score=475.30 Aligned_cols=379 Identities=32% Similarity=0.560 Sum_probs=322.0
Q ss_pred CCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 010672 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (504)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 171 (504)
...+....+|+++++++.+++.+.+.++..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3445667889999999999999999999999999999999999999999999999999999999999887542 23
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
+.++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+. ..++|+|+||++|.+.+......+..+++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6679999999999999999999998888899999999988777766665 678999999999999998888888899999
Q ss_pred EEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeee-ecChhH
Q 010672 251 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IVSESQ 329 (504)
Q Consensus 251 V~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 329 (504)
|+||||++.+.+|...+..++..++++.|++++|||++..+..+...++.++..+......... ..+.+.+. ......
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREEW 266 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSSTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHHh
Confidence 9999999999999999999999999999999999999999999999999999887766555333 33444443 444555
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCC
Q 010672 330 KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLD 409 (504)
Q Consensus 330 k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvd 409 (504)
+...+.+++... ..+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 267 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 888888887765 4468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010672 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 477 (504)
Q Consensus 410 i~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 477 (504)
+|++++||++++|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.++....++|..+.++
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999888888887764
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.8e-58 Score=466.80 Aligned_cols=374 Identities=30% Similarity=0.507 Sum_probs=333.0
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 174 (504)
+.+..+|+++++++.+++++.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3445789999999999999999999999999999999999999999999999999999999999886542 23567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcC
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DE 254 (504)
+||++|+++|+.|+.+.+.++....++.+..++|+.....+...+...++|+|+||++|.+.+......+.++++||+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999998888999999999887777777778899999999999999888777889999999999
Q ss_pred ccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHH
Q 010672 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (504)
Q Consensus 255 ah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (504)
||++.+.+|...+..++..+++..|++++|||++..+.++...++..|..+..... .....+.+.+.......+...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHH
Confidence 99999888888999999999889999999999999999999998888876644332 3345566777777888888888
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCC
Q 010672 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVK 414 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~ 414 (504)
..++... ..+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 8887764 456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHH
Q 010672 415 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAA 476 (504)
Q Consensus 415 ~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 476 (504)
+||++++|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+++|.++.+
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999999999888888887776667765543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-57 Score=460.20 Aligned_cols=370 Identities=28% Similarity=0.513 Sum_probs=328.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.+|+++++++.++++|.+.||.+|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999876542 235679999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
+||++|+.|+.+.+.++.... ++++..++|+.........+.. .++|+|+||++|..++......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987665 7889999998877666665554 37999999999999998887888999999999999
Q ss_pred ccccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHH
Q 010672 257 RMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (504)
Q Consensus 257 ~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (504)
++.+. ++...+..++...++..|++++|||+++.+..++..++.+|..+............+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 67888888988888899999999999999999999999999888776655445556777777778888888888
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~ 415 (504)
+++... ..+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888775 5579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCHHH
Q 010672 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 474 (504)
Q Consensus 416 VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 474 (504)
||++++|+++.+|+||+||+||.|+.|.+++|+++. +..++..+.+.+....+++|.++
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 999999999999999999999999999999999976 55667777777766666666653
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1e-57 Score=482.84 Aligned_cols=357 Identities=32% Similarity=0.495 Sum_probs=300.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (504)
+++.+++.+...||.+|+|+|.++++.++ .+++++++||||||||++|++|++.++...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998875422 223568999999999
Q ss_pred HHHHHHHHHHHhcC----CCCceEEEEECCCCChHhHHHH-hcCCcEEEeChHHHHHHHHcc-CcccccccEEEEcCccc
Q 010672 184 LAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 257 (504)
Q Consensus 184 L~~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lV~DEah~ 257 (504)
|+.|+++.+.++.. ...+.+..++|+.....+...+ ..+++|+|+||++|.+++.+. ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 99999999998642 2346688889988877776666 447899999999999988764 34578899999999999
Q ss_pred cccCCcHHHHHHHHHhcC-------CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCC---cccccceeeeeeecCh
Q 010672 258 MLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKANHAIRQHVDIVSE 327 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 327 (504)
+++++|.+.+..++..++ +..|+++||||+++.+..++..++.++..+.+.... ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999999998877652 477999999999999999999999888776654322 1223334444444332
Q ss_pred -hHHH----HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010672 328 -SQKY----NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (504)
Q Consensus 328 -~~k~----~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~---~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLV 399 (504)
..+. ..+...+.......++||||++++.|+.+++.|++. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2222 333333444355679999999999999999999876 89999999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHH
Q 010672 400 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 463 (504)
Q Consensus 400 aT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 463 (504)
||+++++|||+|++++||++++|.++.+|+||+|||||.|+.|.|++|+++.+..+++.+.+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988888776654
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-56 Score=444.73 Aligned_cols=357 Identities=37% Similarity=0.602 Sum_probs=319.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
..+|+++++++.+++.+.+.|+.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 457999999999999999999999999999999999988 6899999999999999999998876542 367799
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
|++|+++|+.|+.+.+.++....++.+..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999887766655554 68999999999999998877788999999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHH
Q 010672 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (504)
.+.+.+|...+..++..+++..+++++|||++.....+...++.++..+.... ...+.+.+......++...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99999999999999999999999999999999999988888887766554332 2345666667778888888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV 416 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~V 416 (504)
++.. ...++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 8763 55689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCC
Q 010672 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQ 468 (504)
Q Consensus 417 I~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 468 (504)
|++++|+|+.+|+||+||+||.|+.|.+++++++.+...+..+.+.+...-.
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999888888777755433
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.6e-56 Score=450.99 Aligned_cols=370 Identities=28% Similarity=0.454 Sum_probs=315.7
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010672 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (504)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 170 (504)
....++.+|+++++++.+++++.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... .
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~ 93 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----N 93 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----S
T ss_pred CCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----C
Confidence 33456788999999999999999999999999999999999987 8999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-cCccccccc
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVT 248 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~ 248 (504)
.++++||++||++|+.|+.+.+.++.... ++.+....++....... ...++|+|+||++|.+++.+ ....+.+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 35689999999999999999999987653 57777777766543222 34579999999999998865 456678999
Q ss_pred EEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeee-cC
Q 010672 249 YLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI-VS 326 (504)
Q Consensus 249 ~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 326 (504)
+||+||||++.+ .++...+..+...++++.|++++|||+++.+..++..++.++..+.+.... .....+.+.+.. ..
T Consensus 171 ~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 171 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSS 249 (412)
T ss_dssp EEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSS
T ss_pred EEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCC
Confidence 999999999987 678889999999999999999999999999999999999998877665544 333444444444 44
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Q 010672 327 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (504)
Q Consensus 327 ~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~ 406 (504)
...+...+.+++... ..+++||||++++.|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 250 ~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 250 RDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred hHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 567778888777765 4468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCC------CHhHHHHHhcccccCCCcceEEEEecccc-HHHHHHHHHHHHHhCCCCCH
Q 010672 407 GLDVKDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 407 Gvdi~~v~~VI~~~~p~------s~~~~~QriGR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 472 (504)
|+|+|++++||++++|+ +..+|+||+||+||.|+.|.+++|+++.+ ..++..+.+.+...-..++.
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999999994 67899999999999999999999998774 77777887777666555543
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.6e-58 Score=464.08 Aligned_cols=377 Identities=33% Similarity=0.565 Sum_probs=190.3
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 010672 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (504)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 172 (504)
...++..+|+++++++.+++.+...|+.+|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 355677889999999999999999999999999999999999999999999999999999999999887542 236
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEE
Q 010672 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (504)
Q Consensus 173 ~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~ 252 (504)
+++||++|+++|+.|+.+.+.++....++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999998888899999999887665555444 5799999999999999887778889999999
Q ss_pred cCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecCh-hHHH
Q 010672 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKY 331 (504)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~ 331 (504)
||||++.+.+|...+..++..+++..|++++|||+++.+.++...++.+|..+....... ....+.+.+..... ..+.
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL-TLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc-cCCCceEEEEEcCchhhHH
Confidence 999999999999999999999999999999999999999999999999998887765442 22333333333333 3366
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCC
Q 010672 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVK 411 (504)
Q Consensus 332 ~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~ 411 (504)
..+.+++... ..+++||||+++++++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 248 ~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 248 ECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 6666666554 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHHHh
Q 010672 412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAM 477 (504)
Q Consensus 412 ~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~ 477 (504)
++++||++++|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999988888888887766554
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2e-55 Score=444.66 Aligned_cols=357 Identities=31% Similarity=0.527 Sum_probs=307.9
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 174 (504)
...+|+++++++.+++.+.+.++.+|+|+|.++++.++.+ +++++++|||+|||++|++|++.++... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999998 8999999999999999999999887542 23667
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcC
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DE 254 (504)
+||++||++|+.|+.+.+.+++...++.+...+++...... ..+++|+|+||++|.+.+......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888888877544322 33679999999999999988878889999999999
Q ss_pred cccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeec-ChhHHHH
Q 010672 255 ADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQKYN 332 (504)
Q Consensus 255 ah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~ 332 (504)
||++.+ .++...+..+...++++.|++++|||+++.+..++..++.++..+........ ...+.+.+... ....+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHH
Confidence 999987 67888999999999999999999999999999999999988877765554422 33344444433 5566666
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~ 412 (504)
.+..++... ..+++||||++++.|+.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 666666554 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC------CHhHHHHHhcccccCCCcceEEEEecccc-HHHHHHHHHHHH
Q 010672 413 VKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILE 464 (504)
Q Consensus 413 v~~VI~~~~p~------s~~~~~QriGR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~ 464 (504)
+++||++++|+ ++.+|+||+||+||.|+.|.+++|+++.+ ..+...+.+.+.
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999 99999999999999999999999998764 344444444443
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.5e-56 Score=470.86 Aligned_cols=367 Identities=31% Similarity=0.479 Sum_probs=306.1
Q ss_pred CCcCCcccCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCC
Q 010672 96 KPVKSFRDVG----FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAP 169 (504)
Q Consensus 96 ~~~~~f~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 169 (504)
.+..+|+++. +++++++++...||.+|+|+|.++++.++ .+++++++||||+|||++|++|++..+...... .
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-~ 92 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-S 92 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-S
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-c
Confidence 3344555543 99999999999999999999999999999 678999999999999999999999998775321 2
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhcC----CCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHcc-Ccc
Q 010672 170 GDGPIVLVLAPTRELAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH-NTN 243 (504)
Q Consensus 170 ~~~~~vlil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~-~~~ 243 (504)
..++++|||+||++|+.|+.+++.++.. ...+.+..++|+.....+...+. .+++|+|+||++|.+++... ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 3367899999999999999999998752 23467888899988777776664 47899999999999988764 446
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcC-------CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCC---cc
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LK 313 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 313 (504)
+..+++|||||||++++++|.+.+..++..++ +..|+++||||+++.+..++..++.++..+.+.... ..
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 78899999999999999999999998887653 377999999999999999999999888776654322 12
Q ss_pred cccceeeeeeecCh-hHHH----HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---CCCeEEecCCCCHHHHHH
Q 010672 314 ANHAIRQHVDIVSE-SQKY----NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDW 385 (504)
Q Consensus 314 ~~~~~~~~~~~~~~-~~k~----~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~---~~~~~~ih~~~~~~~r~~ 385 (504)
....+.+.+..... ..+. ..+...+.......++||||++++.|+.+++.|++. ++.+..+||+|++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 23344444444332 2222 333334444345679999999999999999999876 899999999999999999
Q ss_pred HHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHH
Q 010672 386 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITIL 463 (504)
Q Consensus 386 ~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l 463 (504)
+++.|++|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.|++|+++.+..++..+.+..
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887776543
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.7e-56 Score=462.71 Aligned_cols=365 Identities=28% Similarity=0.466 Sum_probs=175.9
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 174 (504)
++.+|+++++++.+++.+.++||..|+|+|.++++.++.+ ++++++||||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 3678999999999999999999999999999999999987 8999999999999999999999876542 23568
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-cCcccccccEEEE
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lV~ 252 (504)
+|||+||++|+.|+.+.+.++.... .+.+....++....... ...++|+|+||++|.+++.+ ....+.++++|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999887653 56777777765443221 33578999999999999865 4556789999999
Q ss_pred cCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecC-hhHH
Q 010672 253 DEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQK 330 (504)
Q Consensus 253 DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k 330 (504)
||||++.+ .+|...+..++..+++..|++++|||++..+..++..++.++..+.+.... .....+.+.+..+. ...+
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCceEEEEEeCCHHHH
Confidence 99999987 678888999999999999999999999999999999999999888776654 23344445444443 3556
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 010672 331 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (504)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi 410 (504)
...+..++... ...++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 321 ~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi 399 (479)
T 3fmp_B 321 FQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcc
Confidence 66666666554 34689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC------CHhHHHHHhcccccCCCcceEEEEecccc-HHHHHHHHHHHHHhCCCCC
Q 010672 411 KDVKYVINYDFPG------SLEDYVHRIGRTGRAGAKGTAYTFFTAAN-ARFAKELITILEEAGQKVS 471 (504)
Q Consensus 411 ~~v~~VI~~~~p~------s~~~~~QriGR~gR~g~~g~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 471 (504)
|++++||+||+|. +..+|+||+||+||.|+.|.|++|+++.+ ..++..+.+.+...-..++
T Consensus 400 p~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 400 EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 9999999999994 66899999999999999999999998765 6677777777765544444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-53 Score=419.32 Aligned_cols=335 Identities=33% Similarity=0.551 Sum_probs=288.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
+++.+.+.+.+.|+.+|+|+|.++++.+++++++++++|||+|||++|++|++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998864 45699999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHH
Q 010672 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (504)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~ 265 (504)
.|+.+.+.+++...++.+..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.+.++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999887766665554 48999999999999988877788899999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCC
Q 010672 266 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 345 (504)
Q Consensus 266 ~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 345 (504)
.+..++...+...+++++|||++..+......++.++..+... .....+.+.+.......+ .....+.. ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHh-CCCC
Confidence 9999999998899999999999999999999888877665322 222334444443333222 22234433 3456
Q ss_pred eEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCH
Q 010672 346 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSL 425 (504)
Q Consensus 346 ~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~ 425 (504)
++||||+++++++.+++.|+ .+..+||+++..+|..++++|++|+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999999887 47899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHH
Q 010672 426 EDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 464 (504)
Q Consensus 426 ~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (504)
.+|+||+||+||.|+.|.+++|+. .+..+.+++.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999 88888888777664
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.5e-52 Score=440.48 Aligned_cols=341 Identities=21% Similarity=0.306 Sum_probs=280.8
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 102 RDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 102 ~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
.++++++.+.+.|+. .||.+|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ..++|||+|
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVisP 92 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVICP 92 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEECS
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEeC
Confidence 357788999999998 69999999999999999999999999999999999999999753 457999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H---hcCCcEEEeChHHHH------HHHHccCccccccc
Q 010672 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L---QKGVEIVIATPGRLI------DMLESHNTNLRRVT 248 (504)
Q Consensus 181 t~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~---~~~~~Iiv~T~~~l~------~~l~~~~~~l~~~~ 248 (504)
+++|+.|+.+.+.++ ++.+..+.++......... + ...++|+|+||++|. +.+.. ...+.+++
T Consensus 93 ~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~ 167 (591)
T 2v1x_A 93 LISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFT 167 (591)
T ss_dssp CHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEE
T ss_pred HHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCc
Confidence 999999999999997 4777888887765443222 2 356899999999874 22322 33467899
Q ss_pred EEEEcCccccccCC--cHHHHHH--HHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeee
Q 010672 249 YLVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI 324 (504)
Q Consensus 249 ~lV~DEah~~~~~~--~~~~~~~--il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (504)
+|||||||++.+++ |.+.+.. ++....++.+++++|||+++.+......++..+....+.... ...++...+..
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~ 245 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQ 245 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEE
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEe
Confidence 99999999999987 7776655 444555789999999999998888777777655433333221 12223333322
Q ss_pred c--ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 325 V--SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 325 ~--~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
. ....+...+.+++.......++||||++++.++.+++.|+..++.+..+||+|++.+|..++++|++|+.+|||||+
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 23456677777777655677999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHH
Q 010672 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (504)
Q Consensus 403 ~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 460 (504)
++++|||+|++++||+|++|.|++.|+||+||+||.|+.|.|++|+++.|...+..++
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876655544
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-53 Score=443.81 Aligned_cols=369 Identities=29% Similarity=0.479 Sum_probs=261.4
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010672 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (504)
Q Consensus 93 ~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 170 (504)
+.|.++..|...++++.+++.+.+.++..|+++|.++++.++++ +++++++|||||||++|+++++..+... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~ 187 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----V 187 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----C
Confidence 34555666777789999999999999999999999999999998 8999999999999999999999887553 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
.++++|||+|+++|+.|+.+.+.+++....+.+....++.... .....++|+|+||++|.+.+......+.++++|
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lI 263 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVF 263 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEE
Confidence 3568999999999999999999999877777766655554322 223468999999999999998888788999999
Q ss_pred EEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeee-ecChh
Q 010672 251 VLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IVSES 328 (504)
Q Consensus 251 V~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 328 (504)
|+||||++.+ .++...+..++..++++.|++++|||+++.+..+...+..++..+.+....... ..+.+.+. .....
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEE 342 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CH
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECCchH
Confidence 9999999987 678999999999999999999999999999999999999888877665544332 23333333 33456
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010672 329 QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 408 (504)
Q Consensus 329 ~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gv 408 (504)
.+...+..++... ..+++||||+++++|+.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 6777777766554 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCC------CCHhHHHHHhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCH
Q 010672 409 DVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 409 di~~v~~VI~~~~p------~s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~ 472 (504)
|+|++++||++++| .++.+|+||+||+||.|+.|.+++|+++. +...+..+.+.+......+|.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 78999999999999999999999999854 556677777776665555554
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.7e-51 Score=424.37 Aligned_cols=341 Identities=20% Similarity=0.332 Sum_probs=276.4
Q ss_pred CCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 99 KSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
.+|+++++++.+.+.|++ .|+..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 79999999999999999999999999999999999999998843 356999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH---HH-hcCCcEEEeChHHHHHHHHccCcccccccEEEEc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~D 253 (504)
|+|+++|+.|+.+.+.+++ +.+..+.++........ .+ ....+|+++||++|............++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999999999864 67777777765543322 22 3458999999999853211112234688999999
Q ss_pred CccccccCC--cHHHHHHH---HHhcCCCCceEEecCCCcHHHHHHHH-HhhcCCeEEEEcCCCcccccceeeeeeecCh
Q 010672 254 EADRMLDMG--FEPQIKKI---LSQIRPDRQTLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (504)
Q Consensus 254 Eah~~~~~~--~~~~~~~i---l~~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
|||++.+++ |.+.+..+ ...+ ++.+++++|||+++.+..... .+......+...... ..++. +.+...
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~--~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNIR--YMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTEE--EEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCceE--EEEEeC
Confidence 999999877 66666544 3333 678999999999987765433 332232233333222 12222 223334
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Q 010672 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~G 407 (504)
..+...+.+++... .+.++||||++++.++.+++.|+..++.+..+||++++++|..+++.|++|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 56677788888765 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010672 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 408 vdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 461 (504)
||+|++++||++++|.|++.|+||+||+||.|..|.|++|+++.|....+.++.
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888777666554
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.6e-50 Score=411.64 Aligned_cols=327 Identities=24% Similarity=0.290 Sum_probs=264.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
.+.+.+++....+|+|+|.++++.+++++++++++|||||||++|++|++..+.. ++++|||+||++|+.|+
T Consensus 9 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHHH
Confidence 3444555433348999999999999999999999999999999999988876522 67899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEECCCCC---hHhHHHHhcC-CcEEEeChHHHHHHHHccCcccccccEEEEcCcccccc----
Q 010672 189 QQESTKFGASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---- 260 (504)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~---- 260 (504)
.+.+.+++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.+
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999987 78999999999887 4556666665 89999999999887764 5567899999999986653
Q ss_pred -------CCcHHH-HHHHHHhcC-----------CCCceEEecCC-CcHHHH-HHHHHhhcCCeEEEEcCCCccccccee
Q 010672 261 -------MGFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIR 319 (504)
Q Consensus 261 -------~~~~~~-~~~il~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (504)
++|.+. +..++..++ +..|++++||| +|..+. .+...++. +.+.... .....+.
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~ 232 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNIT 232 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccch
Confidence 677777 788888776 88999999999 665444 33333332 1111111 2334455
Q ss_pred eeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeE-EecCCCCHHHHHHHHHHHhcCCCcEE
Q 010672 320 QHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIM 398 (504)
Q Consensus 320 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~-~ih~~~~~~~r~~~~~~f~~g~~~vL 398 (504)
+.+... ++...+.+++... +.++||||++++.|+.+++.|+..++.+. .+||. +|+ ++.|++|+++||
T Consensus 233 ~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 233 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred heeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 555444 4556667777663 36899999999999999999999999998 99984 444 999999999999
Q ss_pred EE----ccccccCCCCCC-CCEEEEcCCC--CCHhHHHHHhcccccCC----CcceEEEEeccccHHHHHHHHHHHH
Q 010672 399 TA----TDVAARGLDVKD-VKYVINYDFP--GSLEDYVHRIGRTGRAG----AKGTAYTFFTAANARFAKELITILE 464 (504)
Q Consensus 399 Va----T~~~~~Gvdi~~-v~~VI~~~~p--~s~~~~~QriGR~gR~g----~~g~~~~~~~~~~~~~~~~l~~~l~ 464 (504)
|| |+++++|+|+|+ +++||+|++| .++.+|+||+||+||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 99999999999999987 479999999 67777777777777
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-47 Score=414.57 Aligned_cols=334 Identities=21% Similarity=0.245 Sum_probs=267.4
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 98 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
..+|+++++|+++.+.+.+.||.+|+|+|.++++. +.++++++++||||||||++|.++++..+... +.+++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 77899999999999999999999999887742 57899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
|++|+++|+.|+.+.++++. ..++++..+.|+....... ...++|+|+||++|..++.+....+.++++||+||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999997654 3478888888877654432 2368999999999999888876668999999999999
Q ss_pred ccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceee------------eeee
Q 010672 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQ------------HVDI 324 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 324 (504)
.+.+..+...++.++..++ +.|+|+||||+++ ..+++..+.. +.. .... .+..+.. .+..
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~-~~~-~~~~----r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGA-EPV-ATNW----RPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTC-EEE-ECCC----CSSCEEEEEEEECSSTTEEEEEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCC-Ccc-CCCC----CCCCceEEEEecCCcccceeeec
Confidence 9998889999999988886 8999999999986 4556654432 211 0000 0000110 1111
Q ss_pred cC--------hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC----------------------------
Q 010672 325 VS--------ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------- 368 (504)
Q Consensus 325 ~~--------~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~---------------------------- 368 (504)
.. ...+...+.+.+ .+++++||||+++++++.++..|.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (715)
T 2va8_A 228 KDNTTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEK 304 (715)
T ss_dssp TTSCEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHH
T ss_pred CcchhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccccc
Confidence 11 133344444433 356799999999999999999998642
Q ss_pred --------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cC-------CCCCHhHHH
Q 010672 369 --------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD-------FPGSLEDYV 429 (504)
Q Consensus 369 --------~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~-------~p~s~~~~~ 429 (504)
..+..+||+++.++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.
T Consensus 305 ~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~ 384 (715)
T 2va8_A 305 ELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYK 384 (715)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHH
T ss_pred HHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHH
Confidence 24889999999999999999999999999999999999999999999999 99 799999999
Q ss_pred HHhcccccCCC--cceEEEEeccccH
Q 010672 430 HRIGRTGRAGA--KGTAYTFFTAANA 453 (504)
Q Consensus 430 QriGR~gR~g~--~g~~~~~~~~~~~ 453 (504)
||+|||||.|. .|.|++++++.+.
T Consensus 385 Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 385 QMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999884 7999999987763
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.8e-48 Score=410.26 Aligned_cols=331 Identities=21% Similarity=0.251 Sum_probs=208.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
+..+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+++.++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999999999999999998887643 22367799999999999999999999988
Q ss_pred CCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc-ccccccEEEEcCccccccCCcHHHH-HHHHHh-c
Q 010672 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ-I 274 (504)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lV~DEah~~~~~~~~~~~-~~il~~-~ 274 (504)
..++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++.+.+....+ ..++.. +
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999877777777777899999999999999988776 7889999999999999887643222 222222 1
Q ss_pred ---CCCCceEEecCCCcH-----------HHHHHHHHh------------------hcCCeEEEEcCCCccccc------
Q 010672 275 ---RPDRQTLYWSATWPK-----------EVEHLARQY------------------LYNPYKVIIGSPDLKANH------ 316 (504)
Q Consensus 275 ---~~~~~~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~------ 316 (504)
.+..++++||||++. .+..+...+ ...|..............
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 467899999999842 222222222 112221111111000000
Q ss_pred ----c---------------------ee-----eee--------------------------------------------
Q 010672 317 ----A---------------------IR-----QHV-------------------------------------------- 322 (504)
Q Consensus 317 ----~---------------------~~-----~~~-------------------------------------------- 322 (504)
. .. +.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00 000
Q ss_pred ---------------------------------------------eecChhHHHHHHHHHHHhh---cCCCeEEEEeCCc
Q 010672 323 ---------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTK 354 (504)
Q Consensus 323 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lIf~~s~ 354 (504)
.......|...|.++|.+. .+..++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0000244666777777654 4567999999999
Q ss_pred ccHHHHHHHHhhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEcCC
Q 010672 355 KGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYDF 421 (504)
Q Consensus 355 ~~~~~l~~~L~~~------------~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~ 421 (504)
..++.+++.|++. |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 4455567888999999999999999 99999999999999999999999999999
Q ss_pred CCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 422 PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 422 p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
|+|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999 999 88999999998754
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.2e-48 Score=417.92 Aligned_cols=332 Identities=19% Similarity=0.216 Sum_probs=271.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
+|+++++|+.+.+.+.+.||.+|+|+|.++++. ++.++++++++|||||||++|.+|++..+... +.+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88899999999999999999999999887742 5789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~ 258 (504)
+|+++|+.|+.+.++++.. .++++..++|+....... ...++|+|+||++|..++.+....+.++++||+||||.+
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976653 478888899876654331 346899999999999888876666889999999999999
Q ss_pred ccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeee------eeecC-----h
Q 010672 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH------VDIVS-----E 327 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~ 327 (504)
.+..+...+..++..++.+.|+|++|||+++ ..+++..+....+ . ... .+..+... +.... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~~--~-~~~---rp~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAELI--V-SDW---RPVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEEE--E-CCC---CSSEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCccc--C-CCC---CCCcceEEEEeCCeeeccccchhhh
Confidence 9988999999999988778999999999986 4556554432111 1 100 01111111 11111 1
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC---------------------------------CCCeEEe
Q 010672 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSI 374 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~---------------------------------~~~~~~i 374 (504)
..+...+.+.+ .+++++||||+++++|+.++..|.+. ...+..+
T Consensus 224 ~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 23334444443 34679999999999999999998753 1248899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cC----CCCCHhHHHHHhcccccCC--CcceE
Q 010672 375 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD----FPGSLEDYVHRIGRTGRAG--AKGTA 444 (504)
Q Consensus 375 h~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~----~p~s~~~~~QriGR~gR~g--~~g~~ 444 (504)
||++++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|.||+|||||.| ..|.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 380 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEG 380 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999998 76 5889999999999999988 47999
Q ss_pred EEEecccc
Q 010672 445 YTFFTAAN 452 (504)
Q Consensus 445 ~~~~~~~~ 452 (504)
++++++.+
T Consensus 381 ~~l~~~~~ 388 (720)
T 2zj8_A 381 IIVSTSDD 388 (720)
T ss_dssp EEECSSSC
T ss_pred EEEecCcc
Confidence 99999877
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-48 Score=422.70 Aligned_cols=339 Identities=22% Similarity=0.301 Sum_probs=229.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010672 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (504)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 191 (504)
.++...|+.+|+|+|.++++.++.++++|+++|||+|||++|++|++.++...+ .+.+.++|||+||++|+.|+.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999998887643 12246799999999999999999
Q ss_pred HHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc-ccccccEEEEcCccccccCC-cHHHHHH
Q 010672 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKK 269 (504)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lV~DEah~~~~~~-~~~~~~~ 269 (504)
+.++....++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988788999999999877777777777899999999999999988766 78899999999999988654 2222222
Q ss_pred HHHh-----cCCCCceEEecCCCc--------HHHHHHHHH---------------------hhcCCeEEEEcCCCccc-
Q 010672 270 ILSQ-----IRPDRQTLYWSATWP--------KEVEHLARQ---------------------YLYNPYKVIIGSPDLKA- 314 (504)
Q Consensus 270 il~~-----~~~~~~~i~~SAT~~--------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~- 314 (504)
.+.. ..+.+++++||||+. ..+..+... +...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 3322 247789999999986 112222111 11122211110000000
Q ss_pred --------------------------------------------------------------------------------
Q 010672 315 -------------------------------------------------------------------------------- 314 (504)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (504)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------ccceeeeeee----------------cChhHHHHHHHHHHHhhc---CCCe
Q 010672 315 -----------------------------NHAIRQHVDI----------------VSESQKYNKLVKLLEDIM---DGSR 346 (504)
Q Consensus 315 -----------------------------~~~~~~~~~~----------------~~~~~k~~~l~~~l~~~~---~~~~ 346 (504)
...+.+.+.. .....|...+.+++.... ++.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 0000000000 013457777888887652 4568
Q ss_pred EEEEeCCcccHHHHHHHHhhCC----CCeEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCC
Q 010672 347 ILIFMDTKKGCDQITRQLRMDG----WPALSI--------HGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDV 413 (504)
Q Consensus 347 ~lIf~~s~~~~~~l~~~L~~~~----~~~~~i--------h~~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gvdi~~v 413 (504)
+||||+++..++.+++.|+..+ +.+..+ |++|++++|..++++|++ |+.+|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHH
Q 010672 414 KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARF 455 (504)
Q Consensus 414 ~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~ 455 (504)
++||+||+|+|+++|+||+|| ||. +.|.++++++..+...
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 999999999999999999999 998 8899999998876543
No 23
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.8e-48 Score=405.81 Aligned_cols=380 Identities=18% Similarity=0.220 Sum_probs=287.5
Q ss_pred CCCCCCCCccccCcccCccccCCCHHHHHHHHHhcCcee-ccCCCCCCcCCcccCCCCHHHH----HHHHHcCCCCCcHH
Q 010672 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVM----QEISKAGFFEPTPI 125 (504)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~~~----~~l~~~~~~~~~~~ 125 (504)
+.+..+.++-+.+....+.+..+|++++..........+ .|.. ++++ +|+.+. ......|| .|+|+
T Consensus 17 r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld~~-l~ea~a~vrea~~r~lG~-~pt~V 87 (844)
T 1tf5_A 17 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TDDL-LVEAFAVVREASRRVTGM-FPFKV 87 (844)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HHHH-HHHHHHHHHHHHHHHHSC-CCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hHHH-HHHHHHHHHHHHHHHcCC-CCcHH
Confidence 344555556666777888999999999977665533322 2221 2221 222211 01114799 99999
Q ss_pred HHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEE
Q 010672 126 QAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (504)
Q Consensus 126 Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 205 (504)
|..++|.+++|+ |+.|+||+|||++|++|++.+.+. ++.++||+||++||.|..+++..+....++++.+
T Consensus 88 Q~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 88 QLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 999999999998 999999999999999999865443 5569999999999999999999999889999999
Q ss_pred EECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc------CcccccccEEEEcCccccc-cCC---------------
Q 010672 206 IYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG--------------- 262 (504)
Q Consensus 206 ~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lV~DEah~~~-~~~--------------- 262 (504)
++||.+... +....+++|+|+||++| .+++... ...+..+.++||||||+|+ |++
T Consensus 158 i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 158 NLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp CCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 999986543 34445789999999999 6666543 3567889999999999998 764
Q ss_pred cHHHHHHHHHhcC---------CCCceE-----------------EecCCCcHH---HHHHH--HHhhc-CCeEE-----
Q 010672 263 FEPQIKKILSQIR---------PDRQTL-----------------YWSATWPKE---VEHLA--RQYLY-NPYKV----- 305 (504)
Q Consensus 263 ~~~~~~~il~~~~---------~~~~~i-----------------~~SAT~~~~---~~~~~--~~~~~-~~~~~----- 305 (504)
|...+..++..++ +.+|++ ++|||++.. +.... ..++. +...+
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 6678999999986 367887 899998743 33322 22221 11111
Q ss_pred --EEcCC-----------------------------Cc------------------------------------------
Q 010672 306 --IIGSP-----------------------------DL------------------------------------------ 312 (504)
Q Consensus 306 --~~~~~-----------------------------~~------------------------------------------ 312 (504)
++... ..
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 01000 00
Q ss_pred ---ccccce-eeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHH
Q 010672 313 ---KANHAI-RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 387 (504)
Q Consensus 313 ---~~~~~~-~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~ 387 (504)
...... .+.+...+..+|...+.+.+... ..+.++||||+|++.++.|+..|+..|+++..+||++.+.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 000000 01133456778999998888764 4556899999999999999999999999999999999988888777
Q ss_pred HHHhcCCCcEEEEccccccCCCCC--------CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 388 SEFKAGKSPIMTATDVAARGLDVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 388 ~~f~~g~~~vLVaT~~~~~Gvdi~--------~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
++|+.| .|+|||++++||+||+ ++.+||+|+.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 667665 6999999999999999 788999999999999999999999999999999999997763
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.9e-48 Score=417.42 Aligned_cols=332 Identities=18% Similarity=0.271 Sum_probs=265.6
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 100 SFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 100 ~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
+|++++ +|+.+.+.+++.||.+|+|+|.++++.+++++++++++|||||||++|.++++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577787 9999999999999999999999999999999999999999999999999999988764 467999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
++|+++|+.|+.+.++++. ..++++..++|+...... ....++|+|+||++|..++.+....+.++++||+||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999997654 447888888887655432 123689999999999998888766688999999999999
Q ss_pred cccCCcHHHHHHHHHhc---CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeee------eecChh
Q 010672 258 MLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV------DIVSES 328 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 328 (504)
+.+.++...++.++..+ .++.|+|+||||+++ ..+++..+. .+.. .... .+..+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~~~-~~~~----r~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-ADYY-VSDW----RPVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CEEE-ECCC----CSSCEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CCcc-cCCC----CCccceEEEeeCCeeeccCcc
Confidence 99988888888887766 578999999999986 566665443 2221 1110 011111111 111111
Q ss_pred -------HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC------------------------------CCCe
Q 010672 329 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------GWPA 371 (504)
Q Consensus 329 -------~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~------------------------------~~~~ 371 (504)
.+...+.+.+ .+++++||||+++++++.++..|.+. +..+
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 1344444443 35679999999999999999988752 1357
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cC---CCCCHhHHHHHhcccccCC--Ccc
Q 010672 372 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD---FPGSLEDYVHRIGRTGRAG--AKG 442 (504)
Q Consensus 372 ~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~---~p~s~~~~~QriGR~gR~g--~~g 442 (504)
..+||++++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|.||+|||||.| ..|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G 379 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 379 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 88999999999999999999999999999999999999999999998 66 6889999999999999988 479
Q ss_pred eEEEEeccccH
Q 010672 443 TAYTFFTAANA 453 (504)
Q Consensus 443 ~~~~~~~~~~~ 453 (504)
.|++++++.+.
T Consensus 380 ~~~~l~~~~~~ 390 (702)
T 2p6r_A 380 EAIIIVGKRDR 390 (702)
T ss_dssp EEEEECCGGGH
T ss_pred eEEEEecCccH
Confidence 99999998763
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-47 Score=425.36 Aligned_cols=330 Identities=16% Similarity=0.198 Sum_probs=264.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
..|..+++++.+...+....+..|+|+|.++++.++.++++|++||||||||++|++|++..+.. +.++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666677776666666677889999999999999999999999999999999999999988754 6789999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc
Q 010672 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~ 258 (504)
+||++|+.|+++.+.++.. .+..+.|+... ..+++|+|+||++|.+++......+.++++|||||||++
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 9999999999999998764 46667777653 346899999999999999888777899999999999999
Q ss_pred ccCCcHHHHHHHHHhcCCCCceEEecCCCcHH--HHHHHHHhhcCCeEEEEcCCCcccccceeeeeee---------cCh
Q 010672 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKE--VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI---------VSE 327 (504)
Q Consensus 259 ~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 327 (504)
.+++|+..+..++..+++..|+|+||||+|+. +..+.......+..+....... ..+.+++.. ++.
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS---SCEEEEEEETTSSCCEEEEET
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEeecCCcceeeeecc
Confidence 99999999999999999999999999999864 4455556666666655443221 111111110 000
Q ss_pred ----------------------------------------------hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 010672 328 ----------------------------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (504)
Q Consensus 328 ----------------------------------------------~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~ 361 (504)
..++..++..+... ...++||||++++.|+.++
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHH
Confidence 22223333333332 3458999999999999999
Q ss_pred HHHhhCCCC---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 362 RQLRMDGWP---------------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 362 ~~L~~~~~~---------------------------------------~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
..|...++. +..+||+|++.+|..+++.|++|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 998653222 68899999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCC--------CCHhHHHHHhcccccCC--CcceEEEEeccc
Q 010672 403 VAARGLDVKDVKYVINYDFP--------GSLEDYVHRIGRTGRAG--AKGTAYTFFTAA 451 (504)
Q Consensus 403 ~~~~Gvdi~~v~~VI~~~~p--------~s~~~~~QriGR~gR~g--~~g~~~~~~~~~ 451 (504)
++++|||+|++++||+++.| .++.+|+||+|||||.| ..|.|++++++.
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999977653 37788999999999999 578999888776
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.6e-47 Score=404.15 Aligned_cols=332 Identities=21% Similarity=0.302 Sum_probs=236.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.||.+++.++....
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4799999999999999999999999999999999999998887643 1236679999999999999999999998888
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc-ccccccEEEEcCccccccCC-cHHHHHHHHHhc---
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI--- 274 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~~--- 274 (504)
++.+..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999977777777777899999999999999988766 78899999999999998875 333333333332
Q ss_pred --CCCCceEEecCCCcH-----------HHHHHHHHhh------------------cCCeEEEEcCCCcccccceee---
Q 010672 275 --RPDRQTLYWSATWPK-----------EVEHLARQYL------------------YNPYKVIIGSPDLKANHAIRQ--- 320 (504)
Q Consensus 275 --~~~~~~i~~SAT~~~-----------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 320 (504)
.+.++++++|||++. .+..+...+. ..|.......... .......
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc-ccChHHHHHH
Confidence 266899999999843 1222222211 1111111100000 0000000
Q ss_pred -----------------------------------ee-------------------------------------------
Q 010672 321 -----------------------------------HV------------------------------------------- 322 (504)
Q Consensus 321 -----------------------------------~~------------------------------------------- 322 (504)
.+
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00
Q ss_pred ----------------------------------------------eecChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 010672 323 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (504)
Q Consensus 323 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lIf~~s 353 (504)
.......|...+.++|... .+..++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0001144666777777654 345799999999
Q ss_pred cccHHHHHHHHhhCC----C--------CeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEcC
Q 010672 354 KKGCDQITRQLRMDG----W--------PALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 420 (504)
Q Consensus 354 ~~~~~~l~~~L~~~~----~--------~~~~ih~~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gvdi~~v~~VI~~~ 420 (504)
+..++.+++.|+..+ + ....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998763 3 34455669999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHH
Q 010672 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 457 (504)
Q Consensus 421 ~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~ 457 (504)
+|+|+.+|+||+|| ||. +.|.+++|+++.+.....
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 99999999999999 999 899999999988655443
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-46 Score=410.04 Aligned_cols=332 Identities=21% Similarity=0.247 Sum_probs=215.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.++.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.|+.+.+.++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999998887642 2236679999999999999999999998
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc-ccccccEEEEcCccccccCCc-HHHHHHHHHhc
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQI 274 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lV~DEah~~~~~~~-~~~~~~il~~~ 274 (504)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+. ...+..++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999987777777778899999999999999987766 788999999999999987653 22222333221
Q ss_pred ----CCCCceEEecCCCc-----------HHHHHHHHHh------------------hcCCeEEEEcCCCccccc-----
Q 010672 275 ----RPDRQTLYWSATWP-----------KEVEHLARQY------------------LYNPYKVIIGSPDLKANH----- 316 (504)
Q Consensus 275 ----~~~~~~i~~SAT~~-----------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~----- 316 (504)
.+.++++++|||++ +.+..+...+ ...|..............
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 56789999999984 2232222221 122221111110000000
Q ss_pred ---------c------------e----------eeee-------------------------------------------
Q 010672 317 ---------A------------I----------RQHV------------------------------------------- 322 (504)
Q Consensus 317 ---------~------------~----------~~~~------------------------------------------- 322 (504)
. + .+.+
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 0 0000
Q ss_pred ----------------------------------------------eecChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 010672 323 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (504)
Q Consensus 323 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lIf~~s 353 (504)
.......|...|.++|... .++.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0000234666677777653 345799999999
Q ss_pred cccHHHHHHHHhhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEcC
Q 010672 354 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 420 (504)
Q Consensus 354 ~~~~~~l~~~L~~~------------~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gvdi~~v~~VI~~~ 420 (504)
++.++.+++.|+.. |..+..+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 4556677899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 421 ~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+|+|+..|+||+|| ||. +.|.+++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 999 89999999988754
No 28
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.1e-47 Score=434.99 Aligned_cols=401 Identities=19% Similarity=0.261 Sum_probs=295.7
Q ss_pred CCCCCCCCccccCcccCccccCCCHHHHHHHHHhcCceeccCCCCCCcCCcccC----CCCHHHHHHHHHcCCCCCcHHH
Q 010672 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQ 126 (504)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q 126 (504)
.|++++.+.+.+.++.++.+..+.......++.++++.+. ...+.|......+ .||++....+ .||.+|+++|
T Consensus 8 ~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp-~~~~~~~~~~~~l~~i~~Lp~~~~~~f--~g~~~ln~iQ 84 (1724)
T 4f92_B 8 LDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVP-ALKPKPFGSEEQLLPVEKLPKYAQAGF--EGFKTLNRIQ 84 (1724)
T ss_dssp CCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEEC-CCCCCCCCSSCCCCBTTTSCGGGSTTC--TTCSBCCHHH
T ss_pred ecHhhhccccccccccCCceeCCCCCeecccCCcceEecC-CCCCCCCCCcCCccchHhcCHHHHHhc--CCCCCCCHHH
Confidence 7888888888888888877766544443344445666653 2223333333332 3666654443 3789999999
Q ss_pred HHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCC---CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCce
Q 010672 127 AQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL---APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (504)
Q Consensus 127 ~~~i~~~l~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~ 202 (504)
++++|.++. ++|++++||||||||++|.++++..+...... ...++.++||++|+++||.|+++.+.+.....+++
T Consensus 85 s~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~ 164 (1724)
T 4f92_B 85 SKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGIT 164 (1724)
T ss_dssp HHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCE
Confidence 999999874 78999999999999999999999998764321 23357889999999999999999999877788999
Q ss_pred EEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccC--cccccccEEEEcCccccccCCcHHHHHHHHHh-------
Q 010672 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ------- 273 (504)
Q Consensus 203 ~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~------- 273 (504)
|..++|+....... ...++|+|||||+|..++.+.. ..+.++++|||||+|.+.+ .++..++.++..
T Consensus 165 V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~ 240 (1724)
T 4f92_B 165 VAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEM 240 (1724)
T ss_dssp EEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh
Confidence 99999987654322 3468999999999855554432 2478899999999998876 577777766643
Q ss_pred cCCCCceEEecCCCcHHHHHHHHHhhcCCeE-EEEcCCCcccccceeeeeeecChh---HHH----HHHHHHHHhhcCCC
Q 010672 274 IRPDRQTLYWSATWPKEVEHLARQYLYNPYK-VIIGSPDLKANHAIRQHVDIVSES---QKY----NKLVKLLEDIMDGS 345 (504)
Q Consensus 274 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~k~----~~l~~~l~~~~~~~ 345 (504)
.++..|+|++|||+|+ .+++++++..++.. ...-. ....+..+.+.+...... ... ..+.+.+.+...++
T Consensus 241 ~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (1724)
T 4f92_B 241 TQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN 318 (1724)
T ss_dssp HTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred CCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCC
Confidence 4678999999999986 67777765544321 11111 112333455544333221 111 22333444455567
Q ss_pred eEEEEeCCcccHHHHHHHHhhC-------------------------------------CCCeEEecCCCCHHHHHHHHH
Q 010672 346 RILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIHGDKSQAERDWVLS 388 (504)
Q Consensus 346 ~~lIf~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ih~~~~~~~r~~~~~ 388 (504)
++||||+|++.|+.+++.|.+. ...+..+||+|++++|..+++
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 9999999999999998887531 134788999999999999999
Q ss_pred HHhcCCCcEEEEccccccCCCCCCCCEEEE----cCC------CCCHhHHHHHhcccccCCC--cceEEEEeccccHHHH
Q 010672 389 EFKAGKSPIMTATDVAARGLDVKDVKYVIN----YDF------PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAANARFA 456 (504)
Q Consensus 389 ~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~~------p~s~~~~~QriGR~gR~g~--~g~~~~~~~~~~~~~~ 456 (504)
.|++|.++|||||+++++|||+|++++||. |++ |.++.+|.||+|||||.|. .|.++++.++++...+
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 999999999999999999999999999985 443 4589999999999999875 5999999988876665
Q ss_pred HHHH
Q 010672 457 KELI 460 (504)
Q Consensus 457 ~~l~ 460 (504)
..++
T Consensus 479 ~~ll 482 (1724)
T 4f92_B 479 LSLL 482 (1724)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5543
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.5e-46 Score=412.12 Aligned_cols=320 Identities=23% Similarity=0.287 Sum_probs=260.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.+| +|+|+|.++++.+++++|++++||||||||++|+++++..+.. ++++|||+||++||.|+.+.+.+++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHhh
Confidence 566 7999999999999999999999999999999888887776632 6789999999999999999999987
Q ss_pred CCCCceEEEEECCCCC---hHhHHHHhcC-CcEEEeChHHHHHHHHccCcccccccEEEEcCccccc----------c-C
Q 010672 197 ASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML----------D-M 261 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~----------~-~ 261 (504)
..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++. + +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999987 5666777766 99999999999888764 567789999999997654 4 7
Q ss_pred CcHHH-HHHHHHhcC-----------CCCceEEecCC-CcHHHHH-HHHHhhcCCeEEEEcCCCcccccceeeeeeecCh
Q 010672 262 GFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVEH-LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (504)
Q Consensus 262 ~~~~~-~~~il~~~~-----------~~~~~i~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
+|... +..++..++ ++.|+++|||| .|..+.. +....+. +.+.... .....+.+.+...
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS-- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC--
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec--
Confidence 88887 888888776 88999999999 5655442 3333332 1112111 2334455555544
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----cc
Q 010672 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA----TD 402 (504)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~-~ih~~~~~~~r~~~~~~f~~g~~~vLVa----T~ 402 (504)
++...+.+++... ++++||||++++.|+.++..|+..++.+. .+|| +|.+ +++|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 4566667777763 37899999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred ccccCCCCCC-CCEEEEcCCCC----------------------------------------------------------
Q 010672 403 VAARGLDVKD-VKYVINYDFPG---------------------------------------------------------- 423 (504)
Q Consensus 403 ~~~~Gvdi~~-v~~VI~~~~p~---------------------------------------------------------- 423 (504)
++++|||+|+ |++||+||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHhHHHHHhcccccCCCcc--eEEEEeccccHHHHHHHHHHHH
Q 010672 424 --------------SLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILE 464 (504)
Q Consensus 424 --------------s~~~~~QriGR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~ 464 (504)
++.+|+||+|||||.+..| .++.++..+|...+..|.+.++
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965432 3444444478888888888776
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=400.58 Aligned_cols=318 Identities=18% Similarity=0.235 Sum_probs=254.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
+| +|+|+|.++++.+++++++++++|||||||++|+++++..+.. +.++||++||++|+.|+++.+.++..
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 44 5999999999999999999999999999999999988877653 67899999999999999999998764
Q ss_pred CCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCC
Q 010672 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPD 277 (504)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~ 277 (504)
.+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||||++.+.+++..++.++..+++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 566677776542 357999999999999988877788999999999999999999999999999999999
Q ss_pred CceEEecCCCcHHHH--HHHHHhhcCCeEEEEcCCCcccccceeeeeee---------cCh-------------------
Q 010672 278 RQTLYWSATWPKEVE--HLARQYLYNPYKVIIGSPDLKANHAIRQHVDI---------VSE------------------- 327 (504)
Q Consensus 278 ~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------- 327 (504)
.|+|++|||+++... +........+..+...... ...+.+.+.. ++.
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 999999999987432 2333333455555544322 1112222111 000
Q ss_pred ---------------------------hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCC----------
Q 010672 328 ---------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP---------- 370 (504)
Q Consensus 328 ---------------------------~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~---------- 370 (504)
......++..+... ...++||||++++.|+.++..|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11122233333322 3348999999999999999999775442
Q ss_pred -----------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE---
Q 010672 371 -----------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--- 418 (504)
Q Consensus 371 -----------------------------~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~--- 418 (504)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred -cCC----CCCHhHHHHHhcccccCCC--cceEEEEeccc-cHHHHHHH
Q 010672 419 -YDF----PGSLEDYVHRIGRTGRAGA--KGTAYTFFTAA-NARFAKEL 459 (504)
Q Consensus 419 -~~~----p~s~~~~~QriGR~gR~g~--~g~~~~~~~~~-~~~~~~~l 459 (504)
||. |.++.+|+||+|||||.|. .|.|++++++. +...+..+
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 8899999999999999997 49999999876 54444443
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.1e-45 Score=376.80 Aligned_cols=323 Identities=22% Similarity=0.279 Sum_probs=253.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
+|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999988877652 256799999999999999999999875455
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCce
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (504)
..+..+.|+...... ......++|+|+||+.|...+......+.++++||+||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 678888887665433 3334467999999999999888877788899999999999998765455555666666788999
Q ss_pred EEecCCCcH---HHHHHHHHhhcCCeEEEEcCCC-ccc---ccceeee--------------------------------
Q 010672 281 LYWSATWPK---EVEHLARQYLYNPYKVIIGSPD-LKA---NHAIRQH-------------------------------- 321 (504)
Q Consensus 281 i~~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~-------------------------------- 321 (504)
++||||+.. .+.++...+............. ... .......
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999973 3444444332222111100000 000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 010672 322 -------------------------------------------------------------------------------- 321 (504)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (504)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ----------------eeecChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecC------
Q 010672 322 ----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG------ 376 (504)
Q Consensus 322 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~------ 376 (504)
........|...+.+++... ..+.++||||+++..++.+++.|+..++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 00002344667777777765 35679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 377 --DKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 377 --~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+++..+|..++++|++|+.+|||||+++++|+|+|++++||++|+|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999988 999999998753
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-45 Score=405.77 Aligned_cols=332 Identities=21% Similarity=0.265 Sum_probs=214.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.++.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...+.++|||+||++|+.|+.+++.++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999988776542 2236679999999999999999999998
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCc-ccccccEEEEcCccccccCC-cHHHHHHHHHh-
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKKILSQ- 273 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~-~l~~~~~lV~DEah~~~~~~-~~~~~~~il~~- 273 (504)
...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++...+ +...+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999877666666667789999999999999987766 78899999999999998765 22223233332
Q ss_pred ---cCCCCceEEecCCCc-----------HHHHHHHHH------------------hhcCCeEEEEcCCCccccc--c--
Q 010672 274 ---IRPDRQTLYWSATWP-----------KEVEHLARQ------------------YLYNPYKVIIGSPDLKANH--A-- 317 (504)
Q Consensus 274 ---~~~~~~~i~~SAT~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~-- 317 (504)
..+.+++++||||+. +.+.++... +...|.............. .
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 156789999999984 222222211 1222222221111000000 0
Q ss_pred ----------------------ee----------eee-------------------------------------------
Q 010672 318 ----------------------IR----------QHV------------------------------------------- 322 (504)
Q Consensus 318 ----------------------~~----------~~~------------------------------------------- 322 (504)
+. +.+
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 000
Q ss_pred ----------------------------------------------eecChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 010672 323 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (504)
Q Consensus 323 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lIf~~s 353 (504)
.......|...|.++|.+. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 0000234666667777664 345799999999
Q ss_pred cccHHHHHHHHhhC------------CCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEccccccCCCCCCCCEEEEcC
Q 010672 354 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLDVKDVKYVINYD 420 (504)
Q Consensus 354 ~~~~~~l~~~L~~~------------~~~~~~ih~~~~~~~r~~~~~~f~~-g~~~vLVaT~~~~~Gvdi~~v~~VI~~~ 420 (504)
++.++.+++.|... |..+..+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999976 4555667899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 421 FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 421 ~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+|+|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999 999 88999999987643
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.2e-46 Score=412.97 Aligned_cols=320 Identities=20% Similarity=0.287 Sum_probs=258.3
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
..||. | |+|.++|+.++.++|++++||||||||+ |.+|++.++... ++++|||+||++||.|+.+.+.++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHHH
Confidence 46898 9 9999999999999999999999999998 888888887652 678999999999999999999999
Q ss_pred cCCCCc----eEEEEECCCCChHh---HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHH
Q 010672 196 GASSKI----KSTCIYGGVPKGPQ---VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (504)
Q Consensus 196 ~~~~~~----~~~~~~gg~~~~~~---~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~ 268 (504)
+...++ ++.+++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+|++ |...++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 888888 89999999887663 334445 99999999999987665 66899999999999998 467788
Q ss_pred HHHHhc-----------CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHH
Q 010672 269 KILSQI-----------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (504)
Q Consensus 269 ~il~~~-----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (504)
.++..+ +...|++++|||++.. ..++..++.++..+.+.... .....+.+.+. ...+...+.++
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHH
Confidence 887766 3568899999999876 54444444333333222222 22233444443 34556666677
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEE----ccccccCCCCCCC
Q 010672 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARGLDVKDV 413 (504)
Q Consensus 338 l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVa----T~~~~~Gvdi~~v 413 (504)
+... +.++||||++++.|+.+++.|+.. +.+..+||++ ..++++|++|+.+|||| |+++++|||+|+|
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 7654 468999999999999999999988 9999999998 37889999999999999 9999999999995
Q ss_pred -CEEEEcCCC----------------------------------------------------------------------
Q 010672 414 -KYVINYDFP---------------------------------------------------------------------- 422 (504)
Q Consensus 414 -~~VI~~~~p---------------------------------------------------------------------- 422 (504)
++||++|+|
T Consensus 343 I~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 422 (1054)
T 1gku_B 343 IRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 422 (1054)
T ss_dssp CCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEE
T ss_pred ccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeeccee
Confidence 999999999
Q ss_pred -CCHhHHHHHhcccccCCCcc--eEEEEeccccHHHHHHHHHHHHH
Q 010672 423 -GSLEDYVHRIGRTGRAGAKG--TAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 423 -~s~~~~~QriGR~gR~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
.+..+|+||+|||||.|..| .+++|+...+...+..|.+.++.
T Consensus 423 ~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 423 FPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 48888888888888888888774
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.7e-44 Score=378.49 Aligned_cols=321 Identities=20% Similarity=0.238 Sum_probs=233.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|+ .|+|+|..+++.+++|+ ++.++||+|||++|++|++.+... ++.++||+||++||.|..+++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 354 89999999999999998 999999999999999999866543 5569999999999999999999999
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc------CcccccccEEEEcCccccc-cCC------
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG------ 262 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lV~DEah~~~-~~~------ 262 (504)
...++++.+++||.+. +.+....+++|+|+||++| .+++... ...++.+.++|+||||+|+ +++
T Consensus 140 ~~lgl~v~~i~GG~~~--~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPA--PAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCH--HHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 8899999999999865 3444556799999999999 7887654 2567899999999999998 543
Q ss_pred ---------cHHHHHHHHHhcCC--------------------CCceE------------------------EecCCCcH
Q 010672 263 ---------FEPQIKKILSQIRP--------------------DRQTL------------------------YWSATWPK 289 (504)
Q Consensus 263 ---------~~~~~~~il~~~~~--------------------~~~~i------------------------~~SAT~~~ 289 (504)
|...+..++..+++ .+|++ ++|||.+.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 45677788877753 45553 89999764
Q ss_pred HHHHH---H--HHhhc--------CC-----------------------------eEEEEcCCCccccccee--------
Q 010672 290 EVEHL---A--RQYLY--------NP-----------------------------YKVIIGSPDLKANHAIR-------- 319 (504)
Q Consensus 290 ~~~~~---~--~~~~~--------~~-----------------------------~~~~~~~~~~~~~~~~~-------- 319 (504)
....+ + ..++. ++ ..+.+.... .....+.
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~-~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNEN-QTLASITFQNYFRLY 376 (853)
T ss_dssp -----------------------------------------------------------CCCCC-EEEEEEEHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccc-cccceeehHHHHhhh
Confidence 22211 1 11110 00 011111110 0000111
Q ss_pred ---------------------------------------eeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHH
Q 010672 320 ---------------------------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQ 359 (504)
Q Consensus 320 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~ 359 (504)
+.+...+..+|...+.+.+... ..+.++||||+|+..++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 1134457788999999988764 355689999999999999
Q ss_pred HHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC--------------------------
Q 010672 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------- 413 (504)
Q Consensus 360 l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v-------------------------- 413 (504)
|+..|++.|+++..+||++.+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999999999999999999998998888999988 599999999999999973
Q ss_pred -----------CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 414 -----------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 414 -----------~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987763
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=397.86 Aligned_cols=325 Identities=23% Similarity=0.300 Sum_probs=228.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH-HHHHHHhcCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGAS 198 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~-~~~~~~~~~~ 198 (504)
.+|+|+|.++++.++.++++|+++|||+|||++|++|++..+...+. .+.+.++|||+|+++|+.|| .+++.+++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999987765310 11236799999999999999 9999998765
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHH------HccCcccccccEEEEcCccccccCC-cHHHHHHHH
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKIL 271 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l------~~~~~~l~~~~~lV~DEah~~~~~~-~~~~~~~il 271 (504)
.+.+..++|+.........+...++|+|+||++|.+.+ ......+.++++|||||||++.... +...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 58899999998877777777788999999999999887 3445678899999999999986543 222333222
Q ss_pred Hh----cC---------CCCceEEecCCCcH-----------HHHHHHHHhh------------------cCCeEEEE-c
Q 010672 272 SQ----IR---------PDRQTLYWSATWPK-----------EVEHLARQYL------------------YNPYKVII-G 308 (504)
Q Consensus 272 ~~----~~---------~~~~~i~~SAT~~~-----------~~~~~~~~~~------------------~~~~~~~~-~ 308 (504)
.. .. +.+++++||||+.. .+.++...+. ..|..... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 11 77899999999985 1222222221 11211111 0
Q ss_pred CCCccc---------------------cccee-----eee----------------------------------------
Q 010672 309 SPDLKA---------------------NHAIR-----QHV---------------------------------------- 322 (504)
Q Consensus 309 ~~~~~~---------------------~~~~~-----~~~---------------------------------------- 322 (504)
...... ..... +.+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000 000
Q ss_pred ---------------------------eec-------------------------ChhHHHHHHHHHHHhhc---C-CCe
Q 010672 323 ---------------------------DIV-------------------------SESQKYNKLVKLLEDIM---D-GSR 346 (504)
Q Consensus 323 ---------------------------~~~-------------------------~~~~k~~~l~~~l~~~~---~-~~~ 346 (504)
... ....|...|.++|.... + ..+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 01122223334444322 2 679
Q ss_pred EEEEeCCcccHHHHHHHHhhC------CCCeEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCC
Q 010672 347 ILIFMDTKKGCDQITRQLRMD------GWPALSIHGD--------KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKD 412 (504)
Q Consensus 347 ~lIf~~s~~~~~~l~~~L~~~------~~~~~~ih~~--------~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~ 412 (504)
+||||++++.++.+++.|+.. |+.+..+||+ |++.+|..++++|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEecc
Q 010672 413 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450 (504)
Q Consensus 413 v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~ 450 (504)
+++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999976654 44444443
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.1e-43 Score=404.83 Aligned_cols=343 Identities=16% Similarity=0.197 Sum_probs=266.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L 184 (504)
+.+...+++...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+...+ +.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHH
Confidence 456777888888899999999999999986 467999999999999999999999988642 5679999999999
Q ss_pred HHHHHHHHHH-hcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc--CcccccccEEEEcCccccccC
Q 010672 185 AVQIQQESTK-FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDM 261 (504)
Q Consensus 185 ~~q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--~~~l~~~~~lV~DEah~~~~~ 261 (504)
|.|.++.+.+ |+...++++..++|+..... .....++|+||||++|..++.+. ...+.++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999999874 77778899998888754322 22345799999999997766543 335789999999999998875
Q ss_pred CcHHHHHHHHHh-------cCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecCh---hH--
Q 010672 262 GFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE---SQ-- 329 (504)
Q Consensus 262 ~~~~~~~~il~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 329 (504)
++..++.++.. .++..|+|+||||+++ ..+++.++..++.....-... ..+..+...+..... ..
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhh
Confidence 57777766554 3578899999999986 677877765554332222222 233334444333222 11
Q ss_pred --HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC----------------------------------CCCeEE
Q 010672 330 --KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----------------------------------GWPALS 373 (504)
Q Consensus 330 --k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 373 (504)
....+...+....+.+++||||++++.|+.++..|... ...+..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 12234455666677889999999999999888776320 134788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE----cC------CCCCHhHHHHHhcccccCCC--c
Q 010672 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN----YD------FPGSLEDYVHRIGRTGRAGA--K 441 (504)
Q Consensus 374 ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~----~~------~p~s~~~~~QriGR~gR~g~--~ 441 (504)
+|++|++.+|..+++.|++|.++|||||+++++|||+|+.++||. || .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999983 32 35689999999999999987 5
Q ss_pred ceEEEEeccccHHHHHHHH
Q 010672 442 GTAYTFFTAANARFAKELI 460 (504)
Q Consensus 442 g~~~~~~~~~~~~~~~~l~ 460 (504)
|.|++++.+.+..+++.++
T Consensus 1299 G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHHT
T ss_pred eEEEEEecchHHHHHHHHh
Confidence 9999999988887766653
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.4e-42 Score=364.24 Aligned_cols=324 Identities=19% Similarity=0.250 Sum_probs=259.3
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 116 ~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
..|+ .|+++|..+++.+++|+ |+.++||+|||++|++|++.+.+. ++.++||+||++||.|..+++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3588 99999999999999988 999999999999999999765543 456999999999999999999999
Q ss_pred cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHcc------CcccccccEEEEcCccccc-cC------
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM------ 261 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~------~~~l~~~~~lV~DEah~~~-~~------ 261 (504)
....++++.+++||.+.. .+....+++|+++||++| .++|... ...+..+.++||||||+|+ |+
T Consensus 176 ~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 988999999999998643 334445789999999999 7777653 3567889999999999998 43
Q ss_pred ---------CcHHHHHHHHHhcC---------CCCceE-----------------EecCCCcH---HHHHHHH--Hhhc-
Q 010672 262 ---------GFEPQIKKILSQIR---------PDRQTL-----------------YWSATWPK---EVEHLAR--QYLY- 300 (504)
Q Consensus 262 ---------~~~~~~~~il~~~~---------~~~~~i-----------------~~SAT~~~---~~~~~~~--~~~~- 300 (504)
+|...+..++..++ +.+|++ ++|||++. .+...++ .++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47788999999997 678888 99999874 3333221 1211
Q ss_pred C-------CeEEEEcCCC----------------------c------cccccee--------------------------
Q 010672 301 N-------PYKVIIGSPD----------------------L------KANHAIR-------------------------- 319 (504)
Q Consensus 301 ~-------~~~~~~~~~~----------------------~------~~~~~~~-------------------------- 319 (504)
+ ...+++.... . .....+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 1111111100 0 0000000
Q ss_pred ---------------------eeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCC
Q 010672 320 ---------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 377 (504)
Q Consensus 320 ---------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~ 377 (504)
..+...+..+|...+.+.+... ..+.++||||+|++.++.|+..|++.|+++..+||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 1123456678898888888664 455689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCC--------------------------------------------
Q 010672 378 KSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDV-------------------------------------------- 413 (504)
Q Consensus 378 ~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v-------------------------------------------- 413 (504)
+.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888888888887 599999999999999975
Q ss_pred --------CEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHH
Q 010672 414 --------KYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (504)
Q Consensus 414 --------~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~ 454 (504)
.+||+++.|.|...|+||+||+||.|.+|.+++|++..|.-
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999987753
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.3e-43 Score=385.03 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=243.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
+|+|+|.++++.+++++++++++|||||||++|++++...+.. +.++||++|+++|+.|+++.+.++.. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 6899999999999999999999999999999999988776543 67899999999999999999998653 4
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCce
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (504)
+.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++...++.++..++++.++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7788888876542 347999999999999998877788999999999999999999999999999999999999
Q ss_pred EEecCCCcHHHHHHHHHhhc---CCeEEEEcCCCcccccceeeee-----------------------------------
Q 010672 281 LYWSATWPKEVEHLARQYLY---NPYKVIIGSPDLKANHAIRQHV----------------------------------- 322 (504)
Q Consensus 281 i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 322 (504)
|++|||+++.. +++..+.. .+..+...... ...+.+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 99999998644 45444321 23322221111 11111111
Q ss_pred ----------------------------------------------------------eecChhHHHHHHHHHHHhhcCC
Q 010672 323 ----------------------------------------------------------DIVSESQKYNKLVKLLEDIMDG 344 (504)
Q Consensus 323 ----------------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~ 344 (504)
.......+...++..+... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 0011223345566666553 34
Q ss_pred CeEEEEeCCcccHHHHHHHHhhCCC---------------------------------------CeEEecCCCCHHHHHH
Q 010672 345 SRILIFMDTKKGCDQITRQLRMDGW---------------------------------------PALSIHGDKSQAERDW 385 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~ih~~~~~~~r~~ 385 (504)
.++||||++++.|+.++..|...++ .+..+|++|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 5899999999999999999987655 4789999999999999
Q ss_pred HHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCC---------CHhHHHHHhcccccCC--CcceEEEEec
Q 010672 386 VLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPG---------SLEDYVHRIGRTGRAG--AKGTAYTFFT 449 (504)
Q Consensus 386 ~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~---------s~~~~~QriGR~gR~g--~~g~~~~~~~ 449 (504)
+++.|++|.++|||||+++++|||+|+ ..||+++.+. ++.+|+||+|||||.| ..|.+++++.
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999999 5555555544 9999999999999998 4577887773
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-43 Score=379.39 Aligned_cols=334 Identities=20% Similarity=0.252 Sum_probs=249.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
+.+.+.+...+| +||++|.++++.++++ .++++++|||||||++|++|++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344445567788 9999999999998865 589999999999999999999988765 5679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 182 ~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
++||.|+++.+.++....++++..++|+...... +..+.. .++|+|+||+.|.+ ...+.++++||+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999988888999999999876543 333444 48999999987744 45678999999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHH
Q 010672 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (504)
+.... +..+......+++++||||+.+....+. +..+.....+.... .....+...+ . ...+...+.+.
T Consensus 502 ~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~~~~--~-~~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQTML--V-PMDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCEECC--C-CSSTHHHHHHH
T ss_pred hhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceEEEE--e-ccchHHHHHHH
Confidence 63221 2222333457899999999866544333 23332222222111 1111222221 1 22234445555
Q ss_pred HHh-hcCCCeEEEEeCCc--------ccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccc
Q 010672 338 LED-IMDGSRILIFMDTK--------KGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (504)
Q Consensus 338 l~~-~~~~~~~lIf~~s~--------~~~~~l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~ 405 (504)
+.. ...+.+++|||++. ..++.+++.|++ .++.+..+||+|++.+|+.++++|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 544 34567899999976 457888888988 478899999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCC-CHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC
Q 010672 406 RGLDVKDVKYVINYDFPG-SLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 467 (504)
Q Consensus 406 ~Gvdi~~v~~VI~~~~p~-s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 467 (504)
+|||+|++++||+++.|. +.+.|.||+||+||.|+.|.|++++++.+.. ....++.+++..
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~~~rl~~l~~~~ 712 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-AMERLRFFTLNT 712 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-HHHHHHHHHTCC
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-HHHHHHHHHhhh
Confidence 999999999999999995 7899999999999999999999999844433 344455555543
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=8.1e-42 Score=382.93 Aligned_cols=323 Identities=20% Similarity=0.213 Sum_probs=255.0
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhc----CC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 104 VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 104 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~l~----~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
++.+....+.+.. .+| +|||+|.++++.++. ++ ++++++|||+|||++|+++++..+.. +++++
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEE
Confidence 3456677777754 455 579999999999886 55 89999999999999999888876543 66899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEEE
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~ 252 (504)
|++||++|+.|+++.+.++....++++..+.+....... +..+.. .++|+|+||+.|. ....+.++++||+
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999998877778888888876654433 233444 4899999997663 3456789999999
Q ss_pred cCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHH
Q 010672 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN 332 (504)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (504)
||+|++ ......++..++++.++++||||+++....++...+.++..+ .... .....+...+..... ..
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~-~~r~~i~~~~~~~~~---~~ 800 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPP-ARRLAVKTFVREYDS---MV 800 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCC-CBCBCEEEEEEECCH---HH
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCC-CCccccEEEEecCCH---HH
Confidence 999995 345566677777889999999998776666655554443322 1111 122233333333332 22
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCC
Q 010672 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDV 410 (504)
Q Consensus 333 ~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi 410 (504)
....++.....+++++|||++++.++.+++.|++. ++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 23334455556789999999999999999999886 7899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCC-CCCHhHHHHHhcccccCCCcceEEEEeccc
Q 010672 411 KDVKYVINYDF-PGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 411 ~~v~~VI~~~~-p~s~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
|++++||+++. ++++.+|+||+||+||.|+.|.|++++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999988 578999999999999999999999998765
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.1e-43 Score=364.39 Aligned_cols=312 Identities=18% Similarity=0.172 Sum_probs=240.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
.+|+|+|.++++.+++++++++++|||+|||++|+++++..+... ..++|||+||++|+.||.+++.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999999888776542 3489999999999999999999997776
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCc
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~ 279 (504)
.+.+..++++.....+ ....++|+|+||+.|... ....+.++++||+||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 7788888888766544 456789999999976432 234577899999999999874 567788888888899
Q ss_pred eEEecCCCcHHHHHHH-HHhhcCCeEEEEcCCCcc-----cccceeeee---------------------eecChhHHHH
Q 010672 280 TLYWSATWPKEVEHLA-RQYLYNPYKVIIGSPDLK-----ANHAIRQHV---------------------DIVSESQKYN 332 (504)
Q Consensus 280 ~i~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------------------~~~~~~~k~~ 332 (504)
+++||||++....... ...+..+....+...+.. ....+.... .......+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 9999999976543321 112223332222111100 000000000 1111223444
Q ss_pred HHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCC
Q 010672 333 KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLD 409 (504)
Q Consensus 333 ~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gvd 409 (504)
.+.+++.... ...++||||+ .++++.+++.|.+.+..+..+||+++..+|+.+++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 4555555543 2335666666 899999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEec
Q 010672 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 410 i~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
+|++++||++++|+++..|+|++||+||.|+.+.++++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999998875555554
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8.3e-42 Score=321.27 Aligned_cols=239 Identities=65% Similarity=1.097 Sum_probs=221.2
Q ss_pred CCHHHHHHHHHhcCceeccCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010672 73 MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~ 152 (504)
++.++++.+++...+.+.+...|+|+.+|+++++++.+++.+.+.||.+|+|+|.++++.++++++++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHH
Q 010672 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (504)
Q Consensus 153 ~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~ 232 (504)
|++|++.++...+......++++||++||++|+.|+.+.+.++....++.+.+++|+.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987655555568889999999999999999999998888899999999999888888888899999999999
Q ss_pred HHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCC
Q 010672 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 311 (504)
Q Consensus 233 l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (504)
|.+++......+.++++||+||||++.+++|...+..++..++++.|+++||||+|+.+.+++..++.+|..+.++..+
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 9999988888899999999999999999999999999999999999999999999999999999999999999887654
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.8e-44 Score=375.84 Aligned_cols=323 Identities=19% Similarity=0.153 Sum_probs=240.5
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010672 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (504)
Q Consensus 104 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (504)
+++++.+.+.+... ...++|+|+++++.++++++++++||||||||++|++|++..+... ++++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 34555554444332 4678999988999999999999999999999999999999888762 578999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc
Q 010672 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (504)
Q Consensus 184 L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~ 263 (504)
||.|+.+.+..+ .+. ..+.... .....+..+.++|.+.+...+... ..+.++++|||||||++ +.+|
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 999999888632 222 1111100 001123457788888887766554 45789999999999998 6667
Q ss_pred HHHHHHHHHhcC-CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc
Q 010672 264 EPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 342 (504)
Q Consensus 264 ~~~~~~il~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 342 (504)
...+..++..+. ++.|+++||||++..+..++. .++..+.+.... +. .+...++..+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh--
Confidence 778888877764 789999999999876543222 123222222110 00 001122233333
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEE------
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYV------ 416 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~V------ 416 (504)
..+++||||++++.|+.+++.|++.++.+..+|++ +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 35689999999999999999999999999999984 788899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCCHhHHHHHhcccccCCC-cceEEEEec---cccHHHHHHHHHHHHHhCCCCCH
Q 010672 417 --------------INYDFPGSLEDYVHRIGRTGRAGA-KGTAYTFFT---AANARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 417 --------------I~~~~p~s~~~~~QriGR~gR~g~-~g~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~ 472 (504)
|+++.|.+.++|+||+||+||.|. .|.+++|++ +.+...+..+...+......++.
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 777889999999999999999965 899999998 77777777887777665555554
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.4e-42 Score=352.51 Aligned_cols=311 Identities=18% Similarity=0.137 Sum_probs=225.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 118 GFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~-l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++.++... ++++||++||++|+.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcCc-
Confidence 5778999985 79999999886 8889999999999999999887652 577999999999999999988532
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHH-hcC
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS-QIR 275 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~-~~~ 275 (504)
.+......... ....+..|.++|++.|.+.+.+. ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 22111111100 11234578999999998877654 55789999999999987 4333333333332 235
Q ss_pred CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcc
Q 010672 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 355 (504)
Q Consensus 276 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~ 355 (504)
++.|+++||||++..+..+ +..++..+...... +. ..+. .+.+.+.+ ..+++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~---~~~~---------~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PE---RSWN---------TGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CS---SCCS---------SSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC---Cc---hhhH---------HHHHHHHh--CCCCEEEEcCCHH
Confidence 6899999999998744322 22333333222110 00 0000 11223333 3468999999999
Q ss_pred cHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcC---------------
Q 010672 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD--------------- 420 (504)
Q Consensus 356 ~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~--------------- 420 (504)
.|+.+++.|++.++.+..+|+++. +.+++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999754 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHhHHHHHhcccccCCC-cceEEEEecccc---HHHHHHHHHHHHHhCCCCCHHH
Q 010672 421 -----FPGSLEDYVHRIGRTGRAGA-KGTAYTFFTAAN---ARFAKELITILEEAGQKVSPEL 474 (504)
Q Consensus 421 -----~p~s~~~~~QriGR~gR~g~-~g~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~l 474 (504)
.|.+.++|+||+||+||.|. .|.+++|+...+ ..+...+...+...+.++|.++
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 789988875432 2222222334445566666554
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.2e-41 Score=348.88 Aligned_cols=294 Identities=20% Similarity=0.220 Sum_probs=223.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
.+|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.||.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 48999999999999999999999999999999999877654 346999999999999999999995
Q ss_pred Cce-EEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 200 ~~~-~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
++. +..+.|+... ..+|+|+||+.+...+... ..++++||+||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 467 7777766543 4689999999987765421 2458999999999999887753 44444 567
Q ss_pred ceEEecCCCcH-------------------HHHHHHHHhhcCCeEE--EEcCCCc-----------------------cc
Q 010672 279 QTLYWSATWPK-------------------EVEHLARQYLYNPYKV--IIGSPDL-----------------------KA 314 (504)
Q Consensus 279 ~~i~~SAT~~~-------------------~~~~~~~~~~~~~~~~--~~~~~~~-----------------------~~ 314 (504)
+++++|||+.. ...++...++.++... .+..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999862 1223322222222211 1110000 00
Q ss_pred ccceeeee---------------------eecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010672 315 NHAIRQHV---------------------DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (504)
Q Consensus 315 ~~~~~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ 373 (504)
...+.+.+ .......|...+.+++.. ..+.++||||++++.++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 00000000 012344577778888877 356799999999999999999884 557
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCc-ce--EEEEecc
Q 010672 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK-GT--AYTFFTA 450 (504)
Q Consensus 374 ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~-g~--~~~~~~~ 450 (504)
+||+++..+|+.++++|++|+++|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+. +. ++.|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999854 34 4445554
Q ss_pred c
Q 010672 451 A 451 (504)
Q Consensus 451 ~ 451 (504)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-42 Score=354.54 Aligned_cols=287 Identities=18% Similarity=0.188 Sum_probs=201.4
Q ss_pred HHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCC
Q 010672 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (504)
Q Consensus 132 ~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~ 211 (504)
++++++++++++|||||||++|++|++..+... ++++||++||++||.|+++.+..+. +.. ..+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~------v~~-~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD------VKF-HTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC------EEE-ESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC------eEE-ecccc
Confidence 467889999999999999999999999887653 5689999999999999999887542 211 11110
Q ss_pred ChHhHHHHhcCCcEEEeChHHHH---------HHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCCCceE
Q 010672 212 KGPQVRDLQKGVEIVIATPGRLI---------DMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTL 281 (504)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~T~~~l~---------~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i 281 (504)
-.++||+++. ..+. ....+.++++||+||+|++ +..+...+..+.... ++++|++
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred -------------eeccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 0255554433 2222 2345789999999999998 333333333333222 3679999
Q ss_pred EecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 010672 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (504)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~ 361 (504)
+||||+++.+..++.. ..++..... .+.... ...++..+.+ ..+++||||++++.|+.++
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~~---------------~~~~~~-~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQT---------------DIPSEP-WNTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSC-CSSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEeCCCCchhhhhhhc--CCCeeEeee---------------ccChHH-HHHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 9999998754332221 111111100 011111 1111222322 3568999999999999999
Q ss_pred HHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE-------------------cCCC
Q 010672 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN-------------------YDFP 422 (504)
Q Consensus 362 ~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~-------------------~~~p 422 (504)
+.|++.++.+..+|| ++|..+++.|++|+++|||||+++++|||+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4688999999999999999999999999999 999986 8889
Q ss_pred CCHhHHHHHhcccccC-CCcceEEEEe---ccccHHHHHHHHHHHHHhCCCCCH
Q 010672 423 GSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 423 ~s~~~~~QriGR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~ 472 (504)
.+.++|+||+||+||. ++.|.|++|+ ++.+...+..+...+.....+++.
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 9999999999999997 6899999996 677777777777777666666654
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.9e-40 Score=355.63 Aligned_cols=337 Identities=17% Similarity=0.252 Sum_probs=247.2
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 173 (504)
+.++.+|+++++++.+.+.+...+ ..|++.|+++++.++. +++++++||||||||+ ++|++...... ..+.+.
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 345678999999999999999887 7899999999988875 5679999999999999 45555222111 111256
Q ss_pred EEEEEcccHHHHHHHHHHHHHhc-CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEE
Q 010672 174 IVLVLAPTRELAVQIQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~ 252 (504)
+++|++|+++|+.|+.+.+.... ...+..+........ ......+|+++||+++.+.+... ..+.++++|||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIl 214 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIIL 214 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEe
Confidence 79999999999999988776533 222222221111000 01235789999999999877664 45889999999
Q ss_pred cCccc-cccCCcH-HHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHH
Q 010672 253 DEADR-MLDMGFE-PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK 330 (504)
Q Consensus 253 DEah~-~~~~~~~-~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (504)
||+|. .++..+. ..+..++ ...++.++++||||++. ..+.. ++.+...+.+... ...+.+.+......++
T Consensus 215 DEah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr----~~pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGR----TYPVELYYTPEFQRDY 286 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCC----CCCEEEECCSSCCSCH
T ss_pred cCccccccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCc----ccceEEEEecCCchhH
Confidence 99995 6654322 2333333 44578999999999964 34444 4443333333221 1234444443444444
Q ss_pred HHHHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHhh-----------CCCCeEEecCCCCHHHHHHHHHHHh-----
Q 010672 331 YNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRM-----------DGWPALSIHGDKSQAERDWVLSEFK----- 391 (504)
Q Consensus 331 ~~~l~~~l~~---~~~~~~~lIf~~s~~~~~~l~~~L~~-----------~~~~~~~ih~~~~~~~r~~~~~~f~----- 391 (504)
...++..+.. ....+++||||+++++++.+++.|++ .++.+..+||++++++|..+++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 4333333322 12467999999999999999999975 5788999999999999999999999
Q ss_pred cCCCcEEEEccccccCCCCCCCCEEEEcCC------------------CCCHhHHHHHhcccccCCCcceEEEEeccccH
Q 010672 392 AGKSPIMTATDVAARGLDVKDVKYVINYDF------------------PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 453 (504)
Q Consensus 392 ~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~------------------p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~ 453 (504)
+|..+|||||+++++|||||++++||++++ |.|.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999999999999999999887 88999999999999999 89999999987643
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.8e-41 Score=359.52 Aligned_cols=308 Identities=18% Similarity=0.205 Sum_probs=219.2
Q ss_pred HHHcCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 010672 114 ISKAGFF-----EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (504)
Q Consensus 114 l~~~~~~-----~~~~~Q~-----~~i~~~l------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vli 177 (504)
+...||. .|+++|+ ++++.++ +++++++++|||||||++|++|++..+... ++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEE
Confidence 3345555 8999999 9999888 899999999999999999999999887652 577999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEEEEcCcc
Q 010672 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (504)
Q Consensus 178 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah 256 (504)
++||++||.|+++.+..+. +. . ..+. ..... .+.-+-+.+.+.+...+... ..+.++++||+||||
T Consensus 276 laPTr~La~Q~~~~l~~~~----i~--~-~~~~-----l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLP----VR--Y-LTPA-----VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp EESSHHHHHHHHHHTTTSC----CE--E-CCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred EccHHHHHHHHHHHHhcCC----ee--e-eccc-----ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 9999999999999888653 21 0 0000 00011 11234455556665555443 568899999999999
Q ss_pred ccccCCcHHHHHHHHHhc-CCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHH
Q 010672 257 RMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (504)
Q Consensus 257 ~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (504)
++ +..+...+..+...+ +++.|+++||||++..+..+... ..++...... .... ....++
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~-~~~~~l 403 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDR-AWSSGF 403 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSS-CCSSCC
T ss_pred cc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee---------------cCHH-HHHHHH
Confidence 98 222223333333333 36899999999998654322211 1111111100 0111 011122
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~ 415 (504)
..+.+ ..+++||||+++++++.+++.|++.++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 23332 45799999999999999999999999999999994 789999999999999999999999999999 999
Q ss_pred EEE--------------------cCCCCCHhHHHHHhcccccC-CCcceEEEEe---ccccHHHHHHHHHHHHHhC
Q 010672 416 VIN--------------------YDFPGSLEDYVHRIGRTGRA-GAKGTAYTFF---TAANARFAKELITILEEAG 467 (504)
Q Consensus 416 VI~--------------------~~~p~s~~~~~QriGR~gR~-g~~g~~~~~~---~~~~~~~~~~l~~~l~~~~ 467 (504)
||+ |++|.++++|+||+||+||. ++.|.|++|+ ++.+..++..+...+.-..
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~ 552 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDN 552 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHT
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhh
Confidence 998 67899999999999999999 7899999996 5666666666655554433
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.4e-40 Score=347.34 Aligned_cols=278 Identities=22% Similarity=0.246 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.++++|.++++.+..+++++++||||||||++|.++++.. +.++||++|||+||.|+.+.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 4566677766777788899999999999999999888752 4579999999999999998887643 2
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCc-
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ- 279 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~- 279 (504)
..+...+|+.. ...+++|+|+||++| +......+.++++||||||| +++.+|...+..++..++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCc
Confidence 34455566543 355789999999998 45566778889999999996 4566788889999998887776
Q ss_pred -eEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHH
Q 010672 280 -TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCD 358 (504)
Q Consensus 280 -~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~ 358 (504)
++++|||++..+. ...+....+.... ...+ ........ + .....+++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~i----~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN---TGEI----PFYGKAIP-------I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS---CSSE----EETTEEEC-------G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc---cchh----HHHHhhhh-------h-hhccCCcEEEEeCCHHHHH
Confidence 6778999987321 1111111110000 0000 00000000 1 1225679999999999999
Q ss_pred HHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEE----------EcC--------
Q 010672 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVI----------NYD-------- 420 (504)
Q Consensus 359 ~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI----------~~~-------- 420 (504)
.+++.|++.++.+..+||++++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999865 5566679999999999999997 99988 677
Q ss_pred ---CCCCHhHHHHHhcccccCCCcceEEEEeccccHH
Q 010672 421 ---FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (504)
Q Consensus 421 ---~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~ 454 (504)
.|.+.++|+||+||+|| |+.|. ++|+++.+..
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 89999 9999887543
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.3e-40 Score=335.75 Aligned_cols=274 Identities=19% Similarity=0.211 Sum_probs=197.8
Q ss_pred HHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEEC
Q 010672 129 GWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208 (504)
Q Consensus 129 ~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 208 (504)
...++..++++++++|||||||++|++|++..+... ++++||++||++|+.|+.+.+..+ .+....+
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~ 80 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL------PVRYQTS 80 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS------CEEECC-
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc------eEeEEec
Confidence 344566788999999999999999999999887752 577999999999999999988732 2211111
Q ss_pred CCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc-----ccCCcHHHHHHHHHhcCCCCceEEe
Q 010672 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-----LDMGFEPQIKKILSQIRPDRQTLYW 283 (504)
Q Consensus 209 g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~-----~~~~~~~~~~~il~~~~~~~~~i~~ 283 (504)
.... ....+..+.++|.+.+...+... ..+.++++|||||||++ ...+|...+. ..++.|+++|
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~ 149 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFM 149 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEE
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEE
Confidence 1000 01223457788988887766653 55789999999999983 3333222111 2368999999
Q ss_pred cCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHH
Q 010672 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 363 (504)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~ 363 (504)
|||++..+..+... ..|+........ . .+...+.+.+.+ ..+++||||++++.|+.+++.
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~~~~---------------~-~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQDEIP---------------D-RAWSSGYEWITE--YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEECCCC---------------S-SCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EcCCCcchhhhccC--CCCeEEecccCC---------------c-chhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHH
Confidence 99998754322211 223322111000 0 000111223333 256899999999999999999
Q ss_pred HhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEE--------------------cCCCC
Q 010672 364 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVIN--------------------YDFPG 423 (504)
Q Consensus 364 L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~--------------------~~~p~ 423 (504)
|+..++.+..+|++ +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6788999999999999999999999999999 99999 77999
Q ss_pred CHhHHHHHhcccccCCC-cceEEEEeccc
Q 010672 424 SLEDYVHRIGRTGRAGA-KGTAYTFFTAA 451 (504)
Q Consensus 424 s~~~~~QriGR~gR~g~-~g~~~~~~~~~ 451 (504)
|+.+|+||+||+||.|. .|.+++|++..
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 89999999875
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.3e-38 Score=337.98 Aligned_cols=304 Identities=18% Similarity=0.188 Sum_probs=189.7
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEccCCCchHHHHHHHHHHHHhcCCCC--CCCCCCEEEEEcccHHHHHHHH-HHH
Q 010672 121 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL--APGDGPIVLVLAPTRELAVQIQ-QES 192 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~----~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~vlil~Pt~~L~~q~~-~~~ 192 (504)
.|+|+|.++++.++. + +++++++|||+|||++++. ++..+....+. .....+++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 5699999999999999655 44444432211 1124678999999999999999 778
Q ss_pred HHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc----cCcccccccEEEEcCccccccCCcHHHHH
Q 010672 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES----HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (504)
Q Consensus 193 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~----~~~~l~~~~~lV~DEah~~~~~~~~~~~~ 268 (504)
..|+. .+..+.++ ....+.+|+|+||++|...+.. ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 77753 22222222 1234679999999999876542 23345678999999999997653 34566
Q ss_pred HHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEE-----------------E-EcCCCc-cc-----------ccce
Q 010672 269 KILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV-----------------I-IGSPDL-KA-----------NHAI 318 (504)
Q Consensus 269 ~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~-~~-----------~~~~ 318 (504)
.++..++ ..++++||||+..........++..++.. . +..... .. ...+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777774 57899999998743322222222222211 1 100000 00 0000
Q ss_pred eeeeeecC-------hhHHHHH----HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCC--------CeEEecCCCC
Q 010672 319 RQHVDIVS-------ESQKYNK----LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------PALSIHGDKS 379 (504)
Q Consensus 319 ~~~~~~~~-------~~~k~~~----l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~--------~~~~ih~~~~ 379 (504)
........ ...+... +.+.+......+++||||+++++|+.+++.|.+.+. .+..+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 0112222 333344444557999999999999999999976533 2678899876
Q ss_pred HHHHHHHHHHHhcCCCc---EEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCC
Q 010672 380 QAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGA 440 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~~~---vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~ 440 (504)
. +|+.++++|++++.+ |||||+++++|||+|++++||++++|+|+..|+||+||++|.+.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 88999999999999999999999999999999999999999875
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=289.26 Aligned_cols=215 Identities=51% Similarity=0.893 Sum_probs=188.7
Q ss_pred cCCCCCCcCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCC-C
Q 010672 91 GRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-A 168 (504)
Q Consensus 91 ~~~~p~~~~~f~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~ 168 (504)
....|+|..+|++ +++++.+++++.+.||.+|+|+|.++++.+++++++++++|||||||++|++|++.++...... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 5668999999999 7999999999999999999999999999999999999999999999999999999888653221 1
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCccccccc
Q 010672 169 PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (504)
Q Consensus 169 ~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 248 (504)
...++++||++||++|+.|+.+.+.++. ..++.+.+++|+.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2347889999999999999999999986 557889999999988888888888999999999999999988888899999
Q ss_pred EEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEE
Q 010672 249 YLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (504)
Q Consensus 249 ~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (504)
+||+||||++.+++|...+..++..++++.|++++|||+|+.+.+++..++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999999998765
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.7e-38 Score=319.76 Aligned_cols=269 Identities=17% Similarity=0.173 Sum_probs=193.2
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 214 (504)
+++++++++|||||||++|++|++..+... +++++|++||++|+.|+.+.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 368899999999999999999999776652 5689999999999999998775 2344433332111
Q ss_pred hHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCCCceEEecCCCcHHHHH
Q 010672 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (504)
Q Consensus 215 ~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~ 293 (504)
....+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... ++++++++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1122345777898888776665 556889999999999997 333334444444332 5789999999999874322
Q ss_pred HHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEE
Q 010672 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ 373 (504)
+... ..|+...... .. ..+...+.+.+.+ ..+++||||+++++++.+++.|++.++.+..
T Consensus 141 ~~~~--~~~i~~~~~~---------------~~-~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPIIDEETR---------------IP-DKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCEEEECC---------------CC-SSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCceeecccc---------------CC-HHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1110 1111110000 00 1111222334443 2568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCE-----------------EEEcCCCCCHhHHHHHhcccc
Q 010672 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKY-----------------VINYDFPGSLEDYVHRIGRTG 436 (504)
Q Consensus 374 ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~-----------------VI~~~~p~s~~~~~QriGR~g 436 (504)
+||+ +|+.++++|++|+++|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678899999999999999999
Q ss_pred cCCC-cceEEEEe
Q 010672 437 RAGA-KGTAYTFF 448 (504)
Q Consensus 437 R~g~-~g~~~~~~ 448 (504)
|.|. .|.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 45556555
No 54
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-37 Score=293.52 Aligned_cols=225 Identities=43% Similarity=0.730 Sum_probs=199.2
Q ss_pred ceeccCCCCC--CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcC
Q 010672 87 ITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164 (504)
Q Consensus 87 i~~~~~~~p~--~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~ 164 (504)
+.+.+...|. ++.+|+++++++.+++++...||.+|+|+|.++++.+++++++++++|||+|||++|++|++.++...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 3456777776 88999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCC----CCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc
Q 010672 165 PFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH 240 (504)
Q Consensus 165 ~~~----~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~ 240 (504)
... ....++++|||+||++|+.|+.+.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 211 1223578999999999999999999999888889999999999888888888888999999999999999888
Q ss_pred CcccccccEEEEcCccccccCCcHHHHHHHHHhc--CC--CCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCC
Q 010672 241 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 311 (504)
Q Consensus 241 ~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (504)
...+.++++||+||||++.+++|...+..++..+ +. +.|+++||||+++++.+++..++.+|..+.+....
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 8888999999999999999999999999999854 33 68999999999999999999999999988877654
No 55
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.4e-36 Score=284.55 Aligned_cols=213 Identities=31% Similarity=0.504 Sum_probs=180.1
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010672 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (504)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 170 (504)
..+.|++..+|+++++++.+++++.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 44567788999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcC-CcEEEeChHHHHHHHHccCcccccccE
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTY 249 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (504)
.++++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 3567999999999999999999999888888999999988777666666555 899999999999999887778889999
Q ss_pred EEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEc
Q 010672 250 LVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (504)
Q Consensus 250 lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (504)
||+||||++.+.+|...+..++..+++..|++++|||+|+.+.+++..++.+|..+.+.
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999877543
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=287.34 Aligned_cols=230 Identities=33% Similarity=0.564 Sum_probs=197.8
Q ss_pred HHHHHHHhcCceeccCCCCCCcCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010672 77 EVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 77 ~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~ 152 (504)
++..+++...+.+.+.+.|.|+.+|+++ ++++.+++++.+.||..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH-HHHhcCCcEEEeChH
Q 010672 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPG 231 (504)
Q Consensus 153 ~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~~~~~~~Iiv~T~~ 231 (504)
|++|++.++... ...++++||++||++|+.|+++.+.++....++.+..+.++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 234678999999999999999999999888888877766553222111 112346799999999
Q ss_pred HHHHHHHcc--CcccccccEEEEcCcccccc---CCcHHHHHHHHHhc-CCCCceEEecCCCcHHHHHHHHHhhcCCeEE
Q 010672 232 RLIDMLESH--NTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (504)
Q Consensus 232 ~l~~~l~~~--~~~l~~~~~lV~DEah~~~~---~~~~~~~~~il~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 305 (504)
+|.+++... ...+.++++||+||||++.+ .+|...+..++..+ .+..|+++||||+|+++.+++..++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999998876 46788999999999999988 57888898888776 4578999999999999999999999999998
Q ss_pred EEcCC
Q 010672 306 IIGSP 310 (504)
Q Consensus 306 ~~~~~ 310 (504)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 87653
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.5e-37 Score=338.61 Aligned_cols=335 Identities=16% Similarity=0.096 Sum_probs=228.8
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
.+|+|+|.+++..++.. .++|++++||+|||++++..+...+... ...++|||||+ .|+.||.+++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999988864 4799999999999999877655554432 23469999999 99999999996644
Q ss_pred CCCceEEEEECCCCChHhHH---HHhcCCcEEEeChHHHHHHHHc-cCcccccccEEEEcCccccccCCcH--HHHHHHH
Q 010672 198 SSKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFE--PQIKKIL 271 (504)
Q Consensus 198 ~~~~~~~~~~gg~~~~~~~~---~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lV~DEah~~~~~~~~--~~~~~il 271 (504)
++.+..+.++. ...... ......+|+|+|++.+...... ......++++||+||||++.+.... .....+.
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 24444433321 111111 1112468999999888532111 1122457899999999999764421 1222232
Q ss_pred HhcCCCCceEEecCCCcH----HHHHHHHH----------------------------hhcC------------------
Q 010672 272 SQIRPDRQTLYWSATWPK----EVEHLARQ----------------------------YLYN------------------ 301 (504)
Q Consensus 272 ~~~~~~~~~i~~SAT~~~----~~~~~~~~----------------------------~~~~------------------ 301 (504)
.......+++++|||+.. ++..+... ....
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 223356679999999732 01111000 0000
Q ss_pred ----------------------------------CeEEEEcCCCcccc-cceee--------------------------
Q 010672 302 ----------------------------------PYKVIIGSPDLKAN-HAIRQ-------------------------- 320 (504)
Q Consensus 302 ----------------------------------~~~~~~~~~~~~~~-~~~~~-------------------------- 320 (504)
...+.......... .....
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000000000 00000
Q ss_pred --------------------eeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh-CCCCeEEecCCCC
Q 010672 321 --------------------HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKS 379 (504)
Q Consensus 321 --------------------~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~-~~~~~~~ih~~~~ 379 (504)
.........|...+.+++.. ..+.++||||+++..++.++..|.. .|+++..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 00123345678888888877 4567999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHHhcCC--CcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHH
Q 010672 380 QAERDWVLSEFKAGK--SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 457 (504)
Q Consensus 380 ~~~r~~~~~~f~~g~--~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~ 457 (504)
+.+|..++++|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||++|.|+.+.++++....+.....
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee 619 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQS 619 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHH
Confidence 999999999999998 999999999999999999999999999999999999999999999999777766554444445
Q ss_pred HHHHHHHHh
Q 010672 458 ELITILEEA 466 (504)
Q Consensus 458 ~l~~~l~~~ 466 (504)
.+.+.+.++
T Consensus 620 ~i~~~~~~k 628 (968)
T 3dmq_A 620 VLVRWYHEG 628 (968)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 555555443
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=283.59 Aligned_cols=209 Identities=45% Similarity=0.705 Sum_probs=191.0
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 174 (504)
+.+..+|+++++++.+++.+...||..|+++|.++++.+++++++++++|||||||++|++|++..+...+ .+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCce
Confidence 34567899999999999999999999999999999999999999999999999999999999998887642 3567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-cCcccccccEEEEc
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLD 253 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~-~~~~l~~~~~lV~D 253 (504)
+||++||++|+.|+.+.+.++....++.+.+++|+.....+...+..+++|+|+||++|.+.+.. ....+.++++||+|
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999988888999999999888777777788899999999999998876 45678899999999
Q ss_pred CccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEc
Q 010672 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (504)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (504)
|||++.+++|...+..++..++++.|+++||||+++.+.++++.++.+|..+.+.
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999887643
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5e-36 Score=279.51 Aligned_cols=211 Identities=31% Similarity=0.488 Sum_probs=183.2
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010672 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (504)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 170 (504)
++..|.+..+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 55677888999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccE
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (504)
.++++||++||++|+.|+.+.+.++.... ++++..++|+.....+...+ .+++|+|+||++|.+++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 36789999999999999999999987654 78888899988766555544 47899999999999999887778899999
Q ss_pred EEEcCccccccCC-cHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEE
Q 010672 250 LVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 307 (504)
Q Consensus 250 lV~DEah~~~~~~-~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 307 (504)
||+||||++.+++ |...+..++..+++..|++++|||+++.+.+++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999987 999999999999889999999999999999999999998887643
No 60
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.1e-36 Score=312.84 Aligned_cols=326 Identities=17% Similarity=0.224 Sum_probs=224.1
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 120 FEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.+|+|+|.++++++. .++++|++++||+|||++++. ++..+... +...++|||||+ .|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 378999999998773 578899999999999999655 44444432 124569999995 6899999999999
Q ss_pred cCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
... +++..+.|+... ......+|+|+||+.+..... .....+++||+||||++.+.. ....+.+..+
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l- 175 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL- 175 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-
Confidence 754 555555555422 113457899999999865432 223468999999999998765 2344555555
Q ss_pred CCCceEEecCCCcHH----HHHHHHHh--------------------------------hcCCeEEEEcCCC----cccc
Q 010672 276 PDRQTLYWSATWPKE----VEHLARQY--------------------------------LYNPYKVIIGSPD----LKAN 315 (504)
Q Consensus 276 ~~~~~i~~SAT~~~~----~~~~~~~~--------------------------------~~~~~~~~~~~~~----~~~~ 315 (504)
+..+.+++|||+..+ +..+.... +..|+.+.....+ ...+
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSC
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCC
Confidence 356789999997321 11111110 0122222111100 0001
Q ss_pred cceeeeee--------------------------------------------------------ecChhHHHHHHHHHHH
Q 010672 316 HAIRQHVD--------------------------------------------------------IVSESQKYNKLVKLLE 339 (504)
Q Consensus 316 ~~~~~~~~--------------------------------------------------------~~~~~~k~~~l~~~l~ 339 (504)
......+. ......|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 11111110 0112356666677776
Q ss_pred hhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEccccccCCCCCCCCE
Q 010672 340 DIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATDVAARGLDVKDVKY 415 (504)
Q Consensus 340 ~~~-~~~~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~-vLVaT~~~~~Gvdi~~v~~ 415 (504)
+.. .+.++||||+++..++.++..|... ++.+..+||+++..+|..++++|+++ ..+ +|++|+++++|+|+|.+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 653 4569999999999999999999885 89999999999999999999999998 555 7899999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCcceEEE--EeccccHHHHHHHHHHHHHhC
Q 010672 416 VINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFTAANARFAKELITILEEAG 467 (504)
Q Consensus 416 VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~--~~~~~~~~~~~~l~~~l~~~~ 467 (504)
||++|+|||+..|.|++||++|.|+...+++ |+... .+-..+.+.+..+.
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~--tiee~i~~~~~~K~ 467 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG--TLEEKIDQLLAFKR 467 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT--SHHHHTHHHHTTCS
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC--CHHHHHHHHHHHHH
Confidence 9999999999999999999999998876644 44444 33344455554443
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=277.23 Aligned_cols=212 Identities=35% Similarity=0.547 Sum_probs=188.0
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCE
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 174 (504)
++++.+|+++++++.+++.+.+.++..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 566788999999999999999999999999999999999999999999999999999999999988865321 1223678
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-CcccccccEEEEc
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLD 253 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lV~D 253 (504)
+||++||++|+.|+.+.+.+++...++.+..++|+.....+...+ .+++|+|+||++|.+.+... ...+.++++||+|
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999999999888889999999998876665554 57899999999999888764 4667899999999
Q ss_pred CccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEc
Q 010672 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (504)
Q Consensus 254 Eah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (504)
|||++.+++|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999887654
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-35 Score=271.95 Aligned_cols=202 Identities=33% Similarity=0.576 Sum_probs=185.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 010672 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (504)
Q Consensus 99 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil 178 (504)
.+|+++++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred cccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 179 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
+||++|+.|+.+.+.++.... ++.+..++|+.....+...+..+++|+|+||++|.+.+......+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999988766 7888999999888777777778899999999999999988777889999999999999
Q ss_pred cccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEE
Q 010672 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (504)
Q Consensus 258 ~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 305 (504)
+.+.+|...+..++..++++.|++++|||+|+.+.+++..++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998899999999999999999999999998764
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.7e-36 Score=317.85 Aligned_cols=282 Identities=18% Similarity=0.139 Sum_probs=207.9
Q ss_pred HHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECC
Q 010672 130 WPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (504)
Q Consensus 130 i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg 209 (504)
....+++++++++||||||||+. ++..+... +..+|++|||+||.|+++.+.+. ++.+..++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 34457888999999999999984 33344331 23599999999999999999886 4677788887
Q ss_pred CCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC-CCCceEEecCCCc
Q 010672 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSATWP 288 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~-~~~~~i~~SAT~~ 288 (504)
...-. .......+++++|++.+. ....+++|||||||++.+.+|+..+..++..++ ...+++++|||.+
T Consensus 213 ~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 54310 000112578888875441 246789999999999999999999999998887 7889999999953
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCC
Q 010672 289 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG 368 (504)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~ 368 (504)
.+..++... ..+..+.... . ........... ..+... ....+|||+++++++.+++.|++.+
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~-r---~~~l~~~~~~l----------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYK-R---LTPISVLDHAL----------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECC-C---SSCEEECSSCC----------CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhc-CCceEEEEee-e---cchHHHHHHHH----------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 355555443 3333332211 0 00011000000 011111 2345899999999999999999999
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCCCCCCCEEEEcCC--------------CCCHhHHHHHh
Q 010672 369 WPALSIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLDVKDVKYVINYDF--------------PGSLEDYVHRI 432 (504)
Q Consensus 369 ~~~~~ih~~~~~~~r~~~~~~f~~--g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~--------------p~s~~~~~Qri 432 (504)
+.+..+||+|++++|..+++.|++ |+++|||||+++++|||+ ++++||+++. |.+..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 889999999999999999 8999999998 78999999999
Q ss_pred cccccCCCc---ceEEEEeccccHHHHH
Q 010672 433 GRTGRAGAK---GTAYTFFTAANARFAK 457 (504)
Q Consensus 433 GR~gR~g~~---g~~~~~~~~~~~~~~~ 457 (504)
|||||.|.. |.|+.+. ..+...+.
T Consensus 424 GRAGR~g~~g~~G~v~~l~-~~d~~~~~ 450 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMN-HEDLSLLK 450 (677)
T ss_dssp TTBTCTTSSCSSEEEEESS-TTHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEEe-cchHHHHH
Confidence 999999965 5555544 33433333
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=288.40 Aligned_cols=214 Identities=29% Similarity=0.433 Sum_probs=186.2
Q ss_pred ceeccCCCCC---CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchHHHHHHHHHHHH
Q 010672 87 ITVEGRDVPK---PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 87 i~~~~~~~p~---~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~--~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
+.+.+.+.+. ++.+|+++++++.+++++..+||..|+++|.++|+.++.+ +|++++||||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3344444444 4678999999999999999999999999999999999997 8999999999999999999999987
Q ss_pred hcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHc-
Q 010672 162 NAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES- 239 (504)
Q Consensus 162 ~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~- 239 (504)
... ..++++|||+||++||.|+++.+..++... ++.+...+++....... ..+++|+|+||++|.+++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 643 346789999999999999999999987654 67888888877653322 45679999999999999976
Q ss_pred cCcccccccEEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEc
Q 010672 240 HNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (504)
Q Consensus 240 ~~~~l~~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (504)
....+.++++|||||||+|++ .+|...+..++..+++.+|+++||||+++.+..++..++.+|..+.+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 456789999999999999998 789999999999999999999999999999999999999999988764
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1e-35 Score=276.47 Aligned_cols=213 Identities=30% Similarity=0.525 Sum_probs=184.3
Q ss_pred cCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCC
Q 010672 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (504)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 170 (504)
....|+++.+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~ 80 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----V 80 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----C
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----C
Confidence 34567788999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
.++++||++||++|+.|+.+.+.++....++.+..+.|+.....+...+.. ++|+|+||++|.+.+......+.++++|
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMF 159 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 367899999999999999999999988888999999998876665555444 8999999999999998888888999999
Q ss_pred EEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcC
Q 010672 251 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (504)
Q Consensus 251 V~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (504)
|+||||++.+.+|...+..++..+++..|++++|||+++.+.++++.++.+|..+.+..
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999998876554
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.8e-36 Score=279.12 Aligned_cols=208 Identities=35% Similarity=0.578 Sum_probs=185.2
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
|..+|+++++++.+++.+.+.|+.+|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 34679999999999999999999999999999999999999999999999999999999999887642 2367899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCC----CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEE
Q 010672 177 VLAPTRELAVQIQQESTKFGASS----KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~ 252 (504)
|++||++|+.|+.+.+.++.... ++.+..++|+.........+..+++|+|+||++|.+++......+.++++||+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987765 68888889887665555455567899999999999999887778899999999
Q ss_pred cCccccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcC
Q 010672 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (504)
Q Consensus 253 DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (504)
||||++.+++|...+..++..++++.|++++|||+|+++.++++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999988999999999999999999999999998876544
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.8e-35 Score=269.97 Aligned_cols=204 Identities=43% Similarity=0.699 Sum_probs=186.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEc
Q 010672 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (504)
Q Consensus 100 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~ 179 (504)
+|+++++++.+++.+.+.++.+|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998876532 123467899999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 180 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
||++|+.|+.+.+.++... +++..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998765 77888999988888877778889999999999999998877888999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEEE
Q 010672 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 307 (504)
Q Consensus 260 ~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 307 (504)
+.+|...+..++..++++.|++++|||+++.+.++++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999987654
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=278.05 Aligned_cols=204 Identities=38% Similarity=0.586 Sum_probs=180.9
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 010672 99 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (504)
Q Consensus 99 ~~f~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vl 176 (504)
.+|++++ +++.+++.+...||.+|+|+|.++++.++.+++++++||||||||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566665 8999999999999999999999999999999999999999999999999999998876432 122367799
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-CcccccccEEEEcCc
Q 010672 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEA 255 (504)
Q Consensus 177 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l~~~~~lV~DEa 255 (504)
|++||++|+.|+++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++... ...+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988889999999999888888888888999999999999888765 367889999999999
Q ss_pred cccccCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCe
Q 010672 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 303 (504)
Q Consensus 256 h~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 303 (504)
|++.+++|...+..++..+++.+|+++||||+++.+.++++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999998887654
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.7e-35 Score=269.33 Aligned_cols=208 Identities=28% Similarity=0.527 Sum_probs=182.0
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 010672 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (504)
Q Consensus 94 ~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 173 (504)
.+....+|+++++++.+++++.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 34445679999999999999999999999999999999999999999999999999999999999886542 2356
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEECCCCChHhHHHHhc-CCcEEEeChHHHHHHHHccCcccccccEEE
Q 010672 174 IVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~-~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV 251 (504)
++||++||++|+.|+.+++.++.... ++++..++|+.....+...+.. .++|+|+||++|.+++......+.++++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999997765 7889999998877666666654 469999999999999988778889999999
Q ss_pred EcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCeEEE
Q 010672 252 LDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (504)
Q Consensus 252 ~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (504)
+||||++.+ .+|...+..++..++++.|++++|||+++.+.++++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788889999998988999999999999999999999999998764
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.3e-33 Score=288.36 Aligned_cols=316 Identities=22% Similarity=0.265 Sum_probs=238.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+++|..+.-.+..|+ |+.+.||+|||+++.+|++-..+. +..|.||+|++.||.|-.+++..+...++
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 68889988888777766 899999999999999999866554 56699999999999999999999999999
Q ss_pred ceEEEEECC--------------------------------------------------CCChHhHHHHhcCCcEEEeCh
Q 010672 201 IKSTCIYGG--------------------------------------------------VPKGPQVRDLQKGVEIVIATP 230 (504)
Q Consensus 201 ~~~~~~~gg--------------------------------------------------~~~~~~~~~~~~~~~Iiv~T~ 230 (504)
+.+.+++.. .+... +.-.-.|||+.+|.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCEEccC
Confidence 999999882 11111 22223479999999
Q ss_pred HHHH-HHHHcc------CcccccccEEEEcCccccc-cC--------------------------------Cc-------
Q 010672 231 GRLI-DMLESH------NTNLRRVTYLVLDEADRML-DM--------------------------------GF------- 263 (504)
Q Consensus 231 ~~l~-~~l~~~------~~~l~~~~~lV~DEah~~~-~~--------------------------------~~------- 263 (504)
..|- ++|..+ ......+.+.|+||+|.++ |. .|
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 8864 444422 2234668999999999754 00 00
Q ss_pred -----H---HHHHHHH------------------Hh------cCCC----------------------------------
Q 010672 264 -----E---PQIKKIL------------------SQ------IRPD---------------------------------- 277 (504)
Q Consensus 264 -----~---~~~~~il------------------~~------~~~~---------------------------------- 277 (504)
. ..++.++ .. +..+
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 0 0011110 00 0000
Q ss_pred ---------------------------CceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCccccccee-eeeeecChhH
Q 010672 278 ---------------------------RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIR-QHVDIVSESQ 329 (504)
Q Consensus 278 ---------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 329 (504)
.++.+||+|...+..++...|..+ .+.+.. . ....... +.+...+..+
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-n-kp~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-H-KPMIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-S-SCCCCEECCCEEESSHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-C-CCcceeecCcEEEecHHH
Confidence 267899999988887777766543 223322 1 2222222 2355678889
Q ss_pred HHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Q 010672 330 KYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 408 (504)
Q Consensus 330 k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gv 408 (504)
|...+.+.+... ..+.++||||+|++.++.++..|++.|+++..+||+..+.++..+...++.| .|+|||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 999999988765 3567999999999999999999999999999999997666666666777666 5999999999999
Q ss_pred CCC--------CCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHH
Q 010672 409 DVK--------DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 454 (504)
Q Consensus 409 di~--------~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~ 454 (504)
||+ +..+||+++.|.|...|+||+||+||.|.+|.+++|++..|.-
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 998 6679999999999999999999999999999999999988743
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-33 Score=297.53 Aligned_cols=323 Identities=17% Similarity=0.205 Sum_probs=220.6
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l---------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 191 (504)
.|+|||.+++.+++ .+...|+.++||+|||++++..+...+...+ .......++|||||+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-DCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-TSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-cccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 3456999999999999997665544433322 112224569999997 899999999
Q ss_pred HHHhcCCCCceEEEEECCCCChH--hHHHHh------cCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc
Q 010672 192 STKFGASSKIKSTCIYGGVPKGP--QVRDLQ------KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (504)
Q Consensus 192 ~~~~~~~~~~~~~~~~gg~~~~~--~~~~~~------~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~ 263 (504)
+.++... .+.+..++++..... ...... ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998754 456666666643221 111211 136899999999865432 2334578999999999998764
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCcHHH-------------------HHH------------------------------
Q 010672 264 EPQIKKILSQIRPDRQTLYWSATWPKEV-------------------EHL------------------------------ 294 (504)
Q Consensus 264 ~~~~~~il~~~~~~~~~i~~SAT~~~~~-------------------~~~------------------------------ 294 (504)
......+..+ .....+++|||+-.+- ..+
T Consensus 209 -~~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2333444455 3457899999962210 000
Q ss_pred ----HHHhh------------cCCeEEEE--cCCCc------------------ccccc---------------------
Q 010672 295 ----ARQYL------------YNPYKVII--GSPDL------------------KANHA--------------------- 317 (504)
Q Consensus 295 ----~~~~~------------~~~~~~~~--~~~~~------------------~~~~~--------------------- 317 (504)
...++ .......+ ..... .....
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00000 00000000 00000 00000
Q ss_pred -----------------eee----eeeecChhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEe
Q 010672 318 -----------------IRQ----HVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (504)
Q Consensus 318 -----------------~~~----~~~~~~~~~k~~~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~i 374 (504)
+.. .........|...+..++.... .+.++||||+++..++.++..|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 000 0000012345555555555442 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEE--EEec
Q 010672 375 HGDKSQAERDWVLSEFKAGKSP---IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY--TFFT 449 (504)
Q Consensus 375 h~~~~~~~r~~~~~~f~~g~~~---vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~--~~~~ 449 (504)
||+++..+|..++++|+++... +||+|+++++|+|++++++||+||+|||+..+.|++||++|.|+...++ .|++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 9999999999999999998764 8999999999999999999999999999999999999999999886544 4555
Q ss_pred cc
Q 010672 450 AA 451 (504)
Q Consensus 450 ~~ 451 (504)
..
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=306.65 Aligned_cols=391 Identities=15% Similarity=0.218 Sum_probs=254.1
Q ss_pred ccccCcccCccccCCCHHHHHHHHHhcCceec---cCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-
Q 010672 59 FEKNFYVESPSVAAMSEREVEEYRQQREITVE---GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL- 134 (504)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~p~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l- 134 (504)
++.+.+.....+.....+.++.+........- ....+.....|..+...+... .-.+|+|||.+++.+++
T Consensus 177 y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~ 250 (800)
T 3mwy_W 177 YDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAF 250 (800)
T ss_dssp STTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHH
Confidence 34444444444455566777777665322111 111122222344433222211 12379999999998776
Q ss_pred ---cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCC
Q 010672 135 ---KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (504)
Q Consensus 135 ---~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~ 211 (504)
.+.+.|++++||+|||++++..+...+... .....+||||| ..|+.||.+++.++.+. +.+.+.+|...
T Consensus 251 ~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p~--~~v~~~~g~~~ 322 (800)
T 3mwy_W 251 LWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAPD--LNCICYMGNQK 322 (800)
T ss_dssp HHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHSTT--CCEEECCCSSH
T ss_pred HhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCCC--ceEEEEeCCHH
Confidence 678999999999999998665443332221 11344899999 57889999999999754 66666666554
Q ss_pred ChHhHHHH------------hcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCc
Q 010672 212 KGPQVRDL------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (504)
Q Consensus 212 ~~~~~~~~------------~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~ 279 (504)
........ ....+|+|+|++.+...... +....+++|||||||++.+.. ..+...+..+ ....
T Consensus 323 ~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l-~~~~ 397 (800)
T 3mwy_W 323 SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSF-KVAN 397 (800)
T ss_dssp HHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTS-EEEE
T ss_pred HHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHh-hhcc
Confidence 43333322 23468999999998654322 122367899999999997654 3445555555 3456
Q ss_pred eEEecCCCc----HHHHHHHHHhhcC-----------------------------CeEEEEcCCCcc--cccceeeeee-
Q 010672 280 TLYWSATWP----KEVEHLARQYLYN-----------------------------PYKVIIGSPDLK--ANHAIRQHVD- 323 (504)
Q Consensus 280 ~i~~SAT~~----~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~~~~~~~~- 323 (504)
.+++|||+- .++..++..+... |+.+.-...... .+......+.
T Consensus 398 rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v 477 (800)
T 3mwy_W 398 RMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRV 477 (800)
T ss_dssp EEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEE
T ss_pred EEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEe
Confidence 789999972 2222222222111 111110000000 0000000000
Q ss_pred -------------------------------------------------------------------------ecChhHH
Q 010672 324 -------------------------------------------------------------------------IVSESQK 330 (504)
Q Consensus 324 -------------------------------------------------------------------------~~~~~~k 330 (504)
.+....|
T Consensus 478 ~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K 557 (800)
T 3mwy_W 478 ELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGK 557 (800)
T ss_dssp CCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChH
Confidence 0012446
Q ss_pred HHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC---cEEEEcccccc
Q 010672 331 YNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS---PIMTATDVAAR 406 (504)
Q Consensus 331 ~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~---~vLVaT~~~~~ 406 (504)
...+.++|..+. .+.++||||+....++.|...|...++.+..+||+++..+|..++++|+++.. .+|++|.++++
T Consensus 558 ~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~ 637 (800)
T 3mwy_W 558 MVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGL 637 (800)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTT
T ss_pred HHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccC
Confidence 677777777764 35699999999999999999999999999999999999999999999998655 48999999999
Q ss_pred CCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEE--EeccccHHHHHHHHHHHHHhCCCC
Q 010672 407 GLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT--FFTAANARFAKELITILEEAGQKV 470 (504)
Q Consensus 407 Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~--~~~~~~~~~~~~l~~~l~~~~~~~ 470 (504)
|||++.+++||+||+|||+..+.|++||+.|.|++..+.+ |++.. .+-..+++.++.+....
T Consensus 638 GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~--TiEe~i~~~~~~K~~l~ 701 (800)
T 3mwy_W 638 GINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD--TVEEEVLERARKKMILE 701 (800)
T ss_dssp TCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT--SHHHHHHHHHHHHTTSC
T ss_pred CCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC--CHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998865554 45444 33344555555554433
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=5.7e-33 Score=305.21 Aligned_cols=312 Identities=14% Similarity=0.111 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHH
Q 010672 120 FEPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~--------------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~ 185 (504)
..|+|+|.+|++.++. +++.+++++||||||+++ ++++..+... ....++|||+|+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999998875 367999999999999997 5566544321 2246899999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccC--cccccccEEEEcCccccccCC
Q 010672 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMG 262 (504)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~--~~l~~~~~lV~DEah~~~~~~ 262 (504)
.|+.+.+..|.... +.++.+.......+. .+++|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 99999999987531 234444555555553 468999999999998876532 2456789999999999763
Q ss_pred cHHHHHHHHHhcCCCCceEEecCCCcHHH--------HH-------------HHHHhhcCCeEEEEcCCCccc-------
Q 010672 263 FEPQIKKILSQIRPDRQTLYWSATWPKEV--------EH-------------LARQYLYNPYKVIIGSPDLKA------- 314 (504)
Q Consensus 263 ~~~~~~~il~~~~~~~~~i~~SAT~~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~------- 314 (504)
......+...+ ++.++++||||+.... .. ....-...|+.+.........
T Consensus 416 -~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 416 -GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp -HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred -hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 34456666666 5689999999986421 11 111111123322221100000
Q ss_pred c----cceeeeeeecChhHHHHHHHHHH-H---hhc-------CCCeEEEEeCCcccHHHHHHHHhhCC-----------
Q 010672 315 N----HAIRQHVDIVSESQKYNKLVKLL-E---DIM-------DGSRILIFMDTKKGCDQITRQLRMDG----------- 368 (504)
Q Consensus 315 ~----~~~~~~~~~~~~~~k~~~l~~~l-~---~~~-------~~~~~lIf~~s~~~~~~l~~~L~~~~----------- 368 (504)
. ..+.+. .......+...+...+ . ... .+.++||||+++..|..+++.|.+.+
T Consensus 494 d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 000000 0111233333433322 2 211 23589999999999999999997643
Q ss_pred -CCeE-EecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcE
Q 010672 369 -WPAL-SIHGD----------K----------SQ-----------------------------AERDWVLSEFKAGKSPI 397 (504)
Q Consensus 369 -~~~~-~ih~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~v 397 (504)
+.+. ++|++ + ++ .+|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 4554 45542 2 22 14788999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCc----ceEEEEec
Q 010672 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK----GTAYTFFT 449 (504)
Q Consensus 398 LVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~----g~~~~~~~ 449 (504)
||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 678899999999999999999998753 66666664
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=6e-31 Score=236.77 Aligned_cols=181 Identities=37% Similarity=0.549 Sum_probs=151.4
Q ss_pred HHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEec
Q 010672 296 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih 375 (504)
..++.+|..+.+.... .....+.|.+..++...|...|.+++... ..++||||+++..++.+++.|+..++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3467788888776655 55677889999999999999999998763 45899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-cHH
Q 010672 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NAR 454 (504)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~ 454 (504)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 788
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHhhc
Q 010672 455 FAKELITILEEAGQKVSPELAAMGR 479 (504)
Q Consensus 455 ~~~~l~~~l~~~~~~~~~~l~~~~~ 479 (504)
++..+.+.++...+.+|++|.+|++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHccCcCCHHHHhhcC
Confidence 9999999999999999999999875
No 75
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=233.12 Aligned_cols=168 Identities=46% Similarity=0.707 Sum_probs=145.3
Q ss_pred ccccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhc
Q 010672 313 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~ 392 (504)
.....+.|.+..++..+|...|.+++....+..++||||+++..++.+++.|+..++.+..+||++++.+|..++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45677899999999999999999999887667799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCH
Q 010672 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSP 472 (504)
Q Consensus 393 g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 472 (504)
|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...++.+.+.+....+++|+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 010672 473 ELAAMGRG 480 (504)
Q Consensus 473 ~l~~~~~~ 480 (504)
+|.+|+..
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99999864
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2e-28 Score=256.31 Aligned_cols=317 Identities=20% Similarity=0.245 Sum_probs=234.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|+ .|+++|..+++.+++|+ |+.++||+|||++|++|++..... +..++||+||++||.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999755543 4569999999999999999999999
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHH-HHHHHccC------cccc---cccEEEEcCccccc-cCCcH-
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLR---RVTYLVLDEADRML-DMGFE- 264 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l-~~~l~~~~------~~l~---~~~~lV~DEah~~~-~~~~~- 264 (504)
...++++.+++||.+. +......+++|+|+||++| ++++.... ..+. .+.++|+||+|.|+ +.+..
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 9999999999999874 3444456799999999999 78887652 4567 89999999999876 22210
Q ss_pred --------------HHHHHHHHhcCCC-----------------------------------------------------
Q 010672 265 --------------PQIKKILSQIRPD----------------------------------------------------- 277 (504)
Q Consensus 265 --------------~~~~~il~~~~~~----------------------------------------------------- 277 (504)
..+..++..++.+
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 1122222222110
Q ss_pred ----------------------------------------------------------------------------CceE
Q 010672 278 ----------------------------------------------------------------------------RQTL 281 (504)
Q Consensus 278 ----------------------------------------------------------------------------~~~i 281 (504)
..+.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 1345
Q ss_pred EecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHH
Q 010672 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQI 360 (504)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l 360 (504)
+||+|...+..++...|..+- +.+.... ...........+.+...|...+.+.+.+. ..+.||||+|.|.+..+.|
T Consensus 383 GMTGTA~tE~~Ef~~iY~l~V--v~IPTn~-p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEIYGMDV--VVVPTNR-PVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEESSCGGGHHHHHHHHCCCE--EECCCSS-CCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred ecCCCchHHHHHHHHHhCCCE--EEcCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 777777666666655554442 2222211 11111223344567788888888766654 4567999999999999999
Q ss_pred HHHHh---------------------------------------------------------------------------
Q 010672 361 TRQLR--------------------------------------------------------------------------- 365 (504)
Q Consensus 361 ~~~L~--------------------------------------------------------------------------- 365 (504)
++.|+
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hCCCCeEEecCCCCHHHHHHHHHHHhcCC-CcEEEEccccccCCCCCCC-------------------C----------
Q 010672 366 -MDGWPALSIHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLDVKDV-------------------K---------- 414 (504)
Q Consensus 366 -~~~~~~~~ih~~~~~~~r~~~~~~f~~g~-~~vLVaT~~~~~Gvdi~~v-------------------~---------- 414 (504)
+.|++..++++.-...+-+.|-+ .|. -.|-|||++++||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EAeIIAq---AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREAEIVAQ---AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHHHHHHT---TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHHHHHHh---cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 56778888887644333222222 343 3599999999999998632 1
Q ss_pred ---------------------------------------------EEEEcCCCCCHhHHHHHhcccccCCCcceEEEEec
Q 010672 415 ---------------------------------------------YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449 (504)
Q Consensus 415 ---------------------------------------------~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~ 449 (504)
+||-...+.|..--.|-.||+||-|.+|.+..|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 78888889999999999999999999999999988
Q ss_pred ccc
Q 010672 450 AAN 452 (504)
Q Consensus 450 ~~~ 452 (504)
-.|
T Consensus 697 LeD 699 (997)
T 2ipc_A 697 FDD 699 (997)
T ss_dssp SSS
T ss_pred CCh
Confidence 765
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=3.1e-29 Score=266.88 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=134.7
Q ss_pred CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 010672 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 354 (504)
Q Consensus 276 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~ 354 (504)
...|++++|||++...... ........+...... ...+.+.....+...++..+... ..+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~-----~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL-----DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC-----CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC-----CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3678999999998643221 111111111111111 11122223334555565555544 3567999999999
Q ss_pred ccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC-----CCCHhHHH
Q 010672 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 429 (504)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~-----p~s~~~~~ 429 (504)
+.++.+++.|.+.++.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHhcccccCCCcceEEEEeccccHHHHHHHHH
Q 010672 430 HRIGRTGRAGAKGTAYTFFTAANARFAKELIT 461 (504)
Q Consensus 430 QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 461 (504)
||+||+||. ..|.+++|+++.+..+...+.+
T Consensus 530 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARN-ARGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999 5899999999877655444433
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=3.7e-28 Score=258.45 Aligned_cols=175 Identities=20% Similarity=0.242 Sum_probs=135.5
Q ss_pred CCCceEEecCCCcHHHHHHHHHhhcCCeEEEEcCCCcccccceeeeeeecChhHHHHHHHHHHHhhc-CCCeEEEEeCCc
Q 010672 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTK 354 (504)
Q Consensus 276 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~ 354 (504)
...|++++|||++...... ........+.......+ .+.+.....+...++..+.... .+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4678999999998644222 11122221111111111 1222233345556656565543 567999999999
Q ss_pred ccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcCC-----CCCHhHHH
Q 010672 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF-----PGSLEDYV 429 (504)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~~-----p~s~~~~~ 429 (504)
+.|+.+++.|++.++++..+||++++.+|..++++|++|+++|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccccCCCcceEEEEeccccHHHHHHHH
Q 010672 430 HRIGRTGRAGAKGTAYTFFTAANARFAKELI 460 (504)
Q Consensus 430 QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~ 460 (504)
||+||+||. ..|.+++|+++.+..+...+.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 789999999988765544433
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=8.7e-28 Score=211.01 Aligned_cols=151 Identities=40% Similarity=0.599 Sum_probs=141.5
Q ss_pred cccceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC
Q 010672 314 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (504)
Q Consensus 314 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g 393 (504)
....+.|.+..++...|...|.+++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..++++|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4456888999999999999999999875 456899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010672 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 394 ~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+..++..+.+.+..
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999998888877643
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=4.6e-28 Score=214.55 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=143.4
Q ss_pred cceeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010672 316 HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (504)
Q Consensus 316 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 395 (504)
..+.|.+..++..+|...|.+++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 45788888889999999999999875 45689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccc-cHHHHHHHHHHHHHhCCCCCHHH
Q 010672 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA-NARFAKELITILEEAGQKVSPEL 474 (504)
Q Consensus 396 ~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~l 474 (504)
+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +..++..+.+.+.....++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999976 56778888888877777778775
Q ss_pred HH
Q 010672 475 AA 476 (504)
Q Consensus 475 ~~ 476 (504)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 44
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=2.6e-28 Score=214.91 Aligned_cols=160 Identities=37% Similarity=0.630 Sum_probs=141.1
Q ss_pred ceeeeeeecChhH-HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010672 317 AIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (504)
Q Consensus 317 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 395 (504)
.+.|.+..++..+ |...|.+++... ..+++||||++++.++.++..|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4667777777666 999999998875 45789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhCCCCCHHHH
Q 010672 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELA 475 (504)
Q Consensus 396 ~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~ 475 (504)
+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+++|..+.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888877777776654
Q ss_pred Hh
Q 010672 476 AM 477 (504)
Q Consensus 476 ~~ 477 (504)
++
T Consensus 162 ~~ 163 (165)
T 1fuk_A 162 TL 163 (165)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=210.17 Aligned_cols=154 Identities=29% Similarity=0.525 Sum_probs=135.9
Q ss_pred ccceeeeeeecChhH-HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcC
Q 010672 315 NHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (504)
Q Consensus 315 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g 393 (504)
...+.|.+..++... |...|.+++... ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456788888777655 999999988775 456999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCCCEEEEcCCC------CCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHhC
Q 010672 394 KSPIMTATDVAARGLDVKDVKYVINYDFP------GSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAG 467 (504)
Q Consensus 394 ~~~vLVaT~~~~~Gvdi~~v~~VI~~~~p------~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 467 (504)
+.+|||||+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.+++|+++.+...+..+.+.+....
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999888888877775544
Q ss_pred CC
Q 010672 468 QK 469 (504)
Q Consensus 468 ~~ 469 (504)
.+
T Consensus 164 ~~ 165 (175)
T 2rb4_A 164 KQ 165 (175)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=3.3e-26 Score=209.72 Aligned_cols=147 Identities=35% Similarity=0.535 Sum_probs=133.4
Q ss_pred eeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010672 319 RQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (504)
Q Consensus 319 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vL 398 (504)
.+....+....|...+.+++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 44455667788999999998765 45699999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010672 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (504)
Q Consensus 399 VaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (504)
|||+++++|+|+|++++||+|++|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988888887776544
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.1e-25 Score=215.94 Aligned_cols=147 Identities=34% Similarity=0.529 Sum_probs=131.0
Q ss_pred eeeeeeecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 010672 318 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 397 (504)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~v 397 (504)
+.+.+..+....|...+.+++.... .+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566777888899999999998765 679999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHH
Q 010672 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEE 465 (504)
Q Consensus 398 LVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 465 (504)
||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999988777776665543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=204.66 Aligned_cols=166 Identities=23% Similarity=0.222 Sum_probs=122.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHH-HHHHHHHhc
Q 010672 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKFG 196 (504)
Q Consensus 118 ~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q-~~~~~~~~~ 196 (504)
...+|+++|.++++.++.++++++++|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4458999999999999999999999999999999999988877654210 1225679999999999999 888888886
Q ss_pred CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccC------cccccccEEEEcCccccccCCcHHHH-HH
Q 010672 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN------TNLRRVTYLVLDEADRMLDMGFEPQI-KK 269 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~------~~l~~~~~lV~DEah~~~~~~~~~~~-~~ 269 (504)
.. ++.+..+.|+.........+...++|+|+||++|...+.... ..+.++++|||||||++.+.++...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 678888888877666665666678999999999998887643 55788999999999999877544443 33
Q ss_pred HHHhc-------------CCCCceEEecCC
Q 010672 270 ILSQI-------------RPDRQTLYWSAT 286 (504)
Q Consensus 270 il~~~-------------~~~~~~i~~SAT 286 (504)
++... .+.+++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 167899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=5.4e-27 Score=207.45 Aligned_cols=149 Identities=33% Similarity=0.535 Sum_probs=135.2
Q ss_pred ceeeeeeecCh-hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010672 317 AIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (504)
Q Consensus 317 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 395 (504)
.+.|.+..++. ..|...|.+++... ...++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 35566666666 78888888888764 44689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceEEEEeccccHHHHHHHHHHHHHh
Q 010672 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEA 466 (504)
Q Consensus 396 ~vLVaT~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 466 (504)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++|+++.+..++..+.+.+...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999999999999999999999988888887766544
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=3.4e-23 Score=216.07 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=71.5
Q ss_pred HHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE--EccccccC
Q 010672 332 NKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT--ATDVAARG 407 (504)
Q Consensus 332 ~~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLV--aT~~~~~G 407 (504)
..+.+.+.... ..+.+|||++|...++.+++.|.. . ...+++.. .+|..+++.|+++. .||+ +|..+++|
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EG 443 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecc
Confidence 33444443332 346899999999999999998865 3 34556654 46888999999864 6777 78999999
Q ss_pred CCCCC----CCEEEEcCCCCC-H-----------------------------hHHHHHhcccccCCCcceEEEEecc
Q 010672 408 LDVKD----VKYVINYDFPGS-L-----------------------------EDYVHRIGRTGRAGAKGTAYTFFTA 450 (504)
Q Consensus 408 vdi~~----v~~VI~~~~p~s-~-----------------------------~~~~QriGR~gR~g~~g~~~~~~~~ 450 (504)
||+|+ +++||++++|.. + ..+.|.+||+-|...+--++++++.
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99997 899999998841 1 3456999999998666445555554
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=1.1e-24 Score=209.03 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=128.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
.+|+|+|.++++.++.+.+.++++|||+|||+++++++...+... ..++||++||++|+.||.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 389999999999999888899999999999999988777665431 3479999999999999999999998777
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCc
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~ 279 (504)
...+..++++..... .....++|+|+||+.+... ....+.++++||+||||++. ...+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCe
Confidence 778888888865532 2224679999999887543 22346789999999999997 4578888888888999
Q ss_pred eEEecCCCcHHHH
Q 010672 280 TLYWSATWPKEVE 292 (504)
Q Consensus 280 ~i~~SAT~~~~~~ 292 (504)
++++|||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999986543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=2.3e-21 Score=203.00 Aligned_cols=309 Identities=17% Similarity=0.140 Sum_probs=199.5
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~----~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+++|+|.+.+.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 789999997764 4578999999999999999999999972 6789999999999999999999987
Q ss_pred CCCCceEEEEECCCCC---------------------------------hHhH------------------HHHhcCCcE
Q 010672 197 ASSKIKSTCIYGGVPK---------------------------------GPQV------------------RDLQKGVEI 225 (504)
Q Consensus 197 ~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~~~~~~~I 225 (504)
...++++..+.|.... .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7777888877763210 1111 223356899
Q ss_pred EEeChHHHHHHHHccCccc-ccccEEEEcCccccccCCc-----------------------------------------
Q 010672 226 VIATPGRLIDMLESHNTNL-RRVTYLVLDEADRMLDMGF----------------------------------------- 263 (504)
Q Consensus 226 iv~T~~~l~~~l~~~~~~l-~~~~~lV~DEah~~~~~~~----------------------------------------- 263 (504)
||+|+..|++...+....+ ....+|||||||++.+ ..
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999988765443322 4678999999998765 20
Q ss_pred --------------HHHHHHH----------------------------HH----------------------------h
Q 010672 264 --------------EPQIKKI----------------------------LS----------------------------Q 273 (504)
Q Consensus 264 --------------~~~~~~i----------------------------l~----------------------------~ 273 (504)
...+..+ +. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 0000000 00 0
Q ss_pred cCCC-CceEEecCCCcHHHHHHHHHhhcC-CeEE-----EEcCCCcccccceeeeee-ecC------hhHHHHHHHHHHH
Q 010672 274 IRPD-RQTLYWSATWPKEVEHLARQYLYN-PYKV-----IIGSPDLKANHAIRQHVD-IVS------ESQKYNKLVKLLE 339 (504)
Q Consensus 274 ~~~~-~~~i~~SAT~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~-~~~------~~~k~~~l~~~l~ 339 (504)
+... ..+|++|||+.+ ...+...+..+ +... .+.++. ..+..-.+. ..+ +......+.+.+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf---~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV---SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC---SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC---CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 0122 678899999876 44444444333 2221 011211 111111110 011 0222345555544
Q ss_pred hhc--CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc--cccccCCCCC----
Q 010672 340 DIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAARGLDVK---- 411 (504)
Q Consensus 340 ~~~--~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT--~~~~~Gvdi~---- 411 (504)
.+. ..+.+|||++|....+.+++. .+.++..-..+++ +..+++.|+...-.||+|| ..+++|||+|
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 432 345899999999999999873 3444443333445 3557788854444799998 6999999999
Q ss_pred -CCCEEEEcCCCCC------------------------------HhHHHHHhcccccCCCcceEEEEeccc
Q 010672 412 -DVKYVINYDFPGS------------------------------LEDYVHRIGRTGRAGAKGTAYTFFTAA 451 (504)
Q Consensus 412 -~v~~VI~~~~p~s------------------------------~~~~~QriGR~gR~g~~g~~~~~~~~~ 451 (504)
.++.||...+|.. +....|.+||+-|...+--++++++..
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3788888776541 112448999999986665556666543
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=188.19 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=131.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHH
Q 010672 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (504)
Q Consensus 109 ~~~~~l~~~~~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~ 188 (504)
.+.+.+.......++++|.++++.+..+++++++||||||||+++.++++..+.... ......+++++|+++|+.|+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHHH
Confidence 333334444455689999999999999999999999999999998888888766532 12355899999999999999
Q ss_pred HHHHHHhc-CCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCcccc-ccCCcHH-
Q 010672 189 QQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFEP- 265 (504)
Q Consensus 189 ~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~-~~~~~~~- 265 (504)
.+.+.... ...+..+........ .....+++|+|+||++|.+++.. .+.++++||+||||++ ++++|..
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHH
Confidence 88887643 233333322111110 00113578999999999999876 4789999999999986 6766663
Q ss_pred HHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhhcCCe
Q 010672 266 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 303 (504)
Q Consensus 266 ~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 303 (504)
.++.++... ++.|+++||||++.+. +++.+...|+
T Consensus 198 ~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 198 VLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 555555544 6899999999999766 6655555554
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=1.2e-19 Score=191.37 Aligned_cols=317 Identities=18% Similarity=0.173 Sum_probs=192.2
Q ss_pred CCCcHHHHHHHHH----HhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 120 FEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 120 ~~~~~~Q~~~i~~----~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.+|+|.|.+.+.. +..++++++.||||+|||++|++|++.++... +++++|++||++|+.|+.+++.++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHH
Confidence 4789999999864 45789999999999999999999999988652 568999999999999999999987
Q ss_pred cCCCCceEEEEECCCCChH------------------hH-----------------------------------------
Q 010672 196 GASSKIKSTCIYGGVPKGP------------------QV----------------------------------------- 216 (504)
Q Consensus 196 ~~~~~~~~~~~~gg~~~~~------------------~~----------------------------------------- 216 (504)
.....+++..+.|+.+.-. ..
T Consensus 75 ~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l 154 (620)
T 4a15_A 75 SSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEF 154 (620)
T ss_dssp HHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHH
T ss_pred hhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHH
Confidence 6655666666555321000 00
Q ss_pred ---------------HHHhcCCcEEEeChHHHHHHHHccC----c-ccccccEEEEcCccccccC---------------
Q 010672 217 ---------------RDLQKGVEIVIATPGRLIDMLESHN----T-NLRRVTYLVLDEADRMLDM--------------- 261 (504)
Q Consensus 217 ---------------~~~~~~~~Iiv~T~~~l~~~l~~~~----~-~l~~~~~lV~DEah~~~~~--------------- 261 (504)
+.....++|||+++..|++...+.. . -...-.++||||||++.+.
T Consensus 155 ~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~ 234 (620)
T 4a15_A 155 YDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLN 234 (620)
T ss_dssp HHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHH
T ss_pred HHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHH
Confidence 0111235899999988765443211 0 1234579999999975410
Q ss_pred -----------Cc-------HHH-------HH-----------------------------------HH-------HH--
Q 010672 262 -----------GF-------EPQ-------IK-----------------------------------KI-------LS-- 272 (504)
Q Consensus 262 -----------~~-------~~~-------~~-----------------------------------~i-------l~-- 272 (504)
.+ ... +. .+ ..
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 314 (620)
T 4a15_A 235 RADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYV 314 (620)
T ss_dssp HHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred -----------------------h---cCC------------------------------CCceEEecCCCcHHHHHHHH
Q 010672 273 -----------------------Q---IRP------------------------------DRQTLYWSATWPKEVEHLAR 296 (504)
Q Consensus 273 -----------------------~---~~~------------------------------~~~~i~~SAT~~~~~~~~~~ 296 (504)
. ... ...+|++|||+.+ ...+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~ 393 (620)
T 4a15_A 315 ENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSD 393 (620)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHH
T ss_pred HhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHH
Confidence 0 000 1245899999976 555555
Q ss_pred HhhcCCeEEEEcCCCcccccceeeee-eecC------hhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHhhC
Q 010672 297 QYLYNPYKVIIGSPDLKANHAIRQHV-DIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMD 367 (504)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~k~~~l~~~l~~~~--~~~~~lIf~~s~~~~~~l~~~L~~~ 367 (504)
....+...+.+.++.. ..+....+ ...+ +......+.+.+..+. ..+.+|||++|....+.+++.|+.
T Consensus 394 ~lGl~~~~~~~~spf~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~- 470 (620)
T 4a15_A 394 ITGFEIPFKKIGEIFP--PENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF- 470 (620)
T ss_dssp HHCCCCCEEECCCCSC--GGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS-
T ss_pred HhCCCceeeecCCCCC--HHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh-
Confidence 4444333343433321 11111111 0111 1122333444333322 245799999999999999988872
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc--ccccCCCCCC--CCEEEEcCCCCC-------------------
Q 010672 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLDVKD--VKYVINYDFPGS------------------- 424 (504)
Q Consensus 368 ~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~--~~~~Gvdi~~--v~~VI~~~~p~s------------------- 424 (504)
+... ..-+++..++..+++.|+ +.-.||+++. .+++|||+|+ ++.||....|..
T Consensus 471 -~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 471 -EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp -CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred -cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2222 445556678999999999 8888999984 8999999996 678998887741
Q ss_pred ----------HhHHHHHhcccccCCCcceEEEEecc
Q 010672 425 ----------LEDYVHRIGRTGRAGAKGTAYTFFTA 450 (504)
Q Consensus 425 ----------~~~~~QriGR~gR~g~~g~~~~~~~~ 450 (504)
+....|.+||+-|...+--++++++.
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11236999999998666555556544
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=4.9e-20 Score=171.53 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
.+|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 58999999999999999899999999999999988766542 345999999999999999999985
Q ss_pred Cce-EEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 200 ~~~-~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
++. +..+.|+... ..+|+|+|++.+....... ..++++|||||||++.+..+. .++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhc-cCC
Confidence 466 6666665432 4689999999987655421 245899999999999877643 444555 467
Q ss_pred ceEEecCCCcHH
Q 010672 279 QTLYWSATWPKE 290 (504)
Q Consensus 279 ~~i~~SAT~~~~ 290 (504)
+++++|||++..
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.82 E-value=5.6e-20 Score=174.09 Aligned_cols=127 Identities=19% Similarity=0.264 Sum_probs=100.8
Q ss_pred cChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHhhC-CCCeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 010672 325 VSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTA 400 (504)
Q Consensus 325 ~~~~~k~~~l~~~l~~~~-~~~~~lIf~~s~~~~~~l~~~L~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~-vLVa 400 (504)
.....|...+.++|.... .+.++||||+++..++.++..|... ++.+..+||++++.+|..++++|+++ ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999988763 5679999999999999999999885 99999999999999999999999998 777 7899
Q ss_pred ccccccCCCCCCCCEEEEcCCCCCHhHHHHHhcccccCCCcceE--EEEeccc
Q 010672 401 TDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA--YTFFTAA 451 (504)
Q Consensus 401 T~~~~~Gvdi~~v~~VI~~~~p~s~~~~~QriGR~gR~g~~g~~--~~~~~~~ 451 (504)
|+++++|+|++.+++||+||+|||+..|.||+||++|.|+.+.+ +.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999998765 4556554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.95 E-value=1.3e-09 Score=114.83 Aligned_cols=146 Identities=23% Similarity=0.334 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchH--HHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 123 TPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~l~~a~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
++.|.++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4455665554321 1256799999999999999888776443322
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCce
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~ 280 (504)
+..... ..... ....+ ..++-.+|+.. . +.........+++||+|||+ |++ ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 210000 00000 00000 01222223221 1 11112223378999999999 444 56788889999888888
Q ss_pred EEecCC
Q 010672 281 LYWSAT 286 (504)
Q Consensus 281 i~~SAT 286 (504)
|++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 887543
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.71 E-value=1.5e-06 Score=92.03 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
...+++.|.+|+..++...-+++.+|+|+|||.+. ..++.++... .+.++|+++||..-+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45789999999999988777899999999999874 3355555432 2567999999999999998888764
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.64 E-value=8.1e-07 Score=94.53 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|++-|.+|+..++..++ .||.+|+|||||.+. ..++.++..+ +.++|+++||..=+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 689999999999987765 788899999999874 3455555553 5679999999999999888887643
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.3e-06 Score=91.37 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
+..+++.|.+|+..++...-+++.||+|+|||.+.. .++.++... .+.++|+++||..-+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 457899999999999887778999999999998743 344444431 14569999999999999999888753
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.60 E-value=1.8e-06 Score=87.99 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=51.5
Q ss_pred cCCCCCcHHHHHHHHHHhcC----C-cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHH
Q 010672 117 AGFFEPTPIQAQGWPMALKG----R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (504)
Q Consensus 117 ~~~~~~~~~Q~~~i~~~l~~----~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~ 191 (504)
..|..|++-|.+++..++.. + .+++.|+.|||||.+ +..++.++.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 45678899999999876532 3 799999999999976 344566665531 23699999999887776655
Q ss_pred H
Q 010672 192 S 192 (504)
Q Consensus 192 ~ 192 (504)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 4
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.59 E-value=8.4e-06 Score=88.08 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
...+++.|.+|+..++...-+++.+|+|+|||.+. ..++.++... .+.++|+++||..-+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45789999999999988777899999999999873 3455555542 2567999999999999998888764
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.45 E-value=7.2e-07 Score=92.99 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
..+++.|.+++..++..+.+++.++.|+|||.+ +..++..+... +.++++++||...+..+.+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~~----- 254 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-------GLEVGLCAPTGKAARRLGEVTGR----- 254 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHTS-----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhcc-----
Confidence 368999999999999988999999999999976 33344444432 56799999999888777664421
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHH----HHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDM----LESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~----l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
. ..|..+++.. +.........+++||+||++.+. ...+..++..++
T Consensus 255 --~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 255 --T------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp --C------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred --c------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 0 1111111100 01112234467999999999764 456777787777
Q ss_pred CCCceEEec
Q 010672 276 PDRQTLYWS 284 (504)
Q Consensus 276 ~~~~~i~~S 284 (504)
...+++++-
T Consensus 305 ~~~~lilvG 313 (574)
T 3e1s_A 305 PGARVLLVG 313 (574)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 666666643
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.36 E-value=4.3e-05 Score=81.37 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
..|++-|.+++.. ....++|.|+.|||||.+.+- -+.++.... .....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~-ri~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVH-RIAWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHH-HHHHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 356799999999999988444 344444321 1123469999999999999999988763
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.01 E-value=4.9e-05 Score=71.99 Aligned_cols=123 Identities=9% Similarity=0.027 Sum_probs=88.5
Q ss_pred cChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccc
Q 010672 325 VSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (504)
Q Consensus 325 ~~~~~k~~~l~~~l~~~~~-~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~ 403 (504)
+..+.|...|..+|..+.. +.++|||++..+..+.+.++|...++.+..+.|.....++ + -.+....+.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECC
Confidence 3467888888888877654 4599999999999999999999999999999998554322 1 12445555555666
Q ss_pred cccCCC-----CCCCCEEEEcCCCCCHhHH-HHHhcccccCC----CcceEEEEecccc
Q 010672 404 AARGLD-----VKDVKYVINYDFPGSLEDY-VHRIGRTGRAG----AKGTAYTFFTAAN 452 (504)
Q Consensus 404 ~~~Gvd-----i~~v~~VI~~~~p~s~~~~-~QriGR~gR~g----~~g~~~~~~~~~~ 452 (504)
..-|+| +..++.||.||..||+..= +|.+-|+.|.+ +.-.++.+++...
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 566676 6789999999999999874 99998998873 2346677776543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.51 E-value=0.0014 Score=64.20 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhc
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~ 196 (504)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998765556688999999999988666555444432 25679999999999988887776543
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.44 E-value=0.00046 Score=68.53 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=62.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (504)
.++.|+.|+|||... . .+.. ....+|++||++++..|.+.+.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I----~-~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI----L-SRVN--------FEEDLILVPGRQAAEMIRRRANASGII-------------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH----H-HHCC--------TTTCEEEESCHHHHHHHHHHHTTTSCC--------------------
T ss_pred EEEEcCCCCCHHHHH----H-HHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc--------------------
Confidence 678899999999852 2 2221 123799999999999998887543110
Q ss_pred HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
.....-|.|.++++- .........+++||||||-.+ + ...+..++..+++ .+++++-
T Consensus 211 --~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp --CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEE
T ss_pred --ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEec
Confidence 011345778776532 111222234799999999854 3 2344445555543 4455444
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.32 E-value=0.0031 Score=66.00 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.|+|+|...+..+...+.+++..+-++|||.+....++..+...+ +..+++++|+...|..+.+.++.+.....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~------~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS------SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC------CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 589999999987755667899999999999876654554444321 55799999999999998888777654332
Q ss_pred --ceEEEE-ECCCCChHhHHHHhcCCcEEEe--ChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcC
Q 010672 201 --IKSTCI-YGGVPKGPQVRDLQKGVEIVIA--TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (504)
Q Consensus 201 --~~~~~~-~gg~~~~~~~~~~~~~~~Iiv~--T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~ 275 (504)
+..... .... .+ .+.++..|.+. +|+.+.- ..++++|+||+|.+.+. ...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~----~i-~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~ 300 (592)
T 3cpe_A 237 DFLQPGIVEWNKG----SI-ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVIS 300 (592)
T ss_dssp TTTSCCEEEECSS----EE-EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHS
T ss_pred HhhccccccCCcc----EE-EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhc
Confidence 111000 0100 00 11234444333 3443311 13678999999987542 233444443343
Q ss_pred --CCCceEEec
Q 010672 276 --PDRQTLYWS 284 (504)
Q Consensus 276 --~~~~~i~~S 284 (504)
++.+++++|
T Consensus 301 ~~~~~~ii~is 311 (592)
T 3cpe_A 301 SGRRSKIIITT 311 (592)
T ss_dssp SSSCCEEEEEE
T ss_pred cCCCceEEEEe
Confidence 345554443
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.18 E-value=0.0017 Score=56.58 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEccCCCchHHHHH
Q 010672 123 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 123 ~~~Q~~~i~~~l---------~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.|.+++..+. .++.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 344555555443 36779999999999998643
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0047 Score=58.88 Aligned_cols=27 Identities=7% Similarity=-0.129 Sum_probs=20.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
+.++++.+|+|+|||++.- .++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4579999999999998743 35566544
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.00089 Score=60.49 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=51.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
+.-+++.+++|+|||+..+- ++..+... +.+++++.|...- .-...+....++. .
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~~-------g~kVli~~~~~d~-----r~~~~i~srlG~~---------~--- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEYA-------DVKYLVFKPKIDT-----RSIRNIQSRTGTS---------L--- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCCG-----GGCSSCCCCCCCS---------S---
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHhc-------CCEEEEEEeccCc-----hHHHHHHHhcCCC---------c---
Confidence 34477889999999987544 44444332 5568888775420 0000111111110 0
Q ss_pred HHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccc
Q 010672 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 216 ~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~ 259 (504)
..+.+.+...+.+.+.... .-.++++||+||++.+.
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1234566667766665432 22457999999999754
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.90 E-value=0.003 Score=55.53 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=26.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
+=.++.+++|+|||+..+- ++...... +.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~-~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIR-RIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHHHC-------CCEEEEEEecc
Confidence 3477889999999987554 44443332 66799999874
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.85 E-value=0.0018 Score=56.79 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
++-.++.+++|+|||+.++- ++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeecc
Confidence 45578899999999987543 33333321 55789998874
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.81 E-value=0.0042 Score=66.70 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=70.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCC
Q 010672 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (504)
Q Consensus 120 ~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~ 199 (504)
..|++-|.+++.. ....++|.|..|||||.+..- -+.++.... .-....+|+|+.|+..|.++.+.+.+.....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~-ri~~ll~~~---~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTH-RIAYLMAEK---HVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHH-HHHHHHHTT---CCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHH-HHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999999875 346799999999999988443 344444321 1123569999999999999999888753210
Q ss_pred CceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHcc-Cccc-ccccEEEEcCcc
Q 010672 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNL-RRVTYLVLDEAD 256 (504)
Q Consensus 200 ~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~-~~~l-~~~~~lV~DEah 256 (504)
...+-|+|...|...+.+. ...+ -.-.+-|+|+.+
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 1246788888875443321 1111 012356777765
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.80 E-value=0.0015 Score=58.20 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=25.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (504)
.++.+++|+|||+.++-.+...... +.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEeccC
Confidence 5678999999998755444444333 667999998753
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.51 E-value=0.0049 Score=65.68 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcC
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~ 197 (504)
.|++-|.+++... ...++|.|+.|||||.+.+--+...+.... .....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999753 567999999999999874433333332211 1245699999999999999999987643
No 114
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.50 E-value=0.0052 Score=59.35 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCchHHHHHHHHHHHHhc
Q 010672 122 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 122 ~~~~Q~~~i~~~l----~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
+.|+|.+++..+. +++ .+++.+|.|+|||..+.. +...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHhC
Confidence 4688888876654 333 389999999999987554 4455544
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.48 E-value=0.011 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=18.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
+..+++.+|+|+|||..+-. +...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHH
Confidence 35799999999999986433 444443
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.41 E-value=0.006 Score=54.82 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
++=.++.+++|+|||..++-.+..+... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 4447788999999998755444444332 66799998864
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.37 E-value=0.0012 Score=55.75 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999975
No 118
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.32 E-value=0.0076 Score=62.95 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCC
Q 010672 121 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~--~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~ 198 (504)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+ ++..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 679999999998876 33478889999999965444 4444322 269999998765543333221
Q ss_pred CCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhcCCCC
Q 010672 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (504)
Q Consensus 199 ~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~ 278 (504)
.|-+..|+.+.. .+...++||||||=.+. .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 133456655431 23358999999999874 66777776533
Q ss_pred ceEEecCCC
Q 010672 279 QTLYWSATW 287 (504)
Q Consensus 279 ~~i~~SAT~ 287 (504)
..++||.|.
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 246666663
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.025 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
...+++.+|+|+|||..+.. +...+
T Consensus 43 ~~~vll~G~~G~GKT~la~~-~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG-LAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH-HHHHH
T ss_pred CCceEEECCCCCCHHHHHHH-HHHHH
Confidence 45699999999999976433 33443
No 120
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.19 E-value=0.013 Score=58.20 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=39.9
Q ss_pred ccccEEEEcCccccc---cCCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhh
Q 010672 245 RRVTYLVLDEADRML---DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 245 ~~~~~lV~DEah~~~---~~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
..+++||+|++-++. +..+...+..+...+.++.-++.++|+...+....+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468899999998754 3445667777777778887788889887665555555554
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.024 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
+.+++.+|+|+|||..+.. +...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 6799999999999986432 444443
No 122
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.14 E-value=0.0062 Score=54.09 Aligned_cols=38 Identities=16% Similarity=-0.026 Sum_probs=25.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
.=.++.+++|+|||+..+- .+...... +.+++++.|..
T Consensus 29 ~I~vitG~M~sGKTT~Llr-~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIR-RLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCceEEEEecc
Confidence 3477889999999976443 34443332 56689999865
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.038 Score=54.06 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
...+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.04 E-value=0.02 Score=61.59 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGL 408 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gv 408 (504)
++-++.....+.+++|.++++.-|...++.+++ .++.+..+||+++..++..+++.+.+|..+|+|+| ..+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 333444444567899999999988888777654 37899999999999999999999999999999999 5666778
Q ss_pred CCCCCCEEEE
Q 010672 409 DVKDVKYVIN 418 (504)
Q Consensus 409 di~~v~~VI~ 418 (504)
++.++.+||.
T Consensus 487 ~~~~l~lVVI 496 (780)
T 1gm5_A 487 HFKNLGLVII 496 (780)
T ss_dssp CCSCCCEEEE
T ss_pred hccCCceEEe
Confidence 8888888874
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.94 E-value=0.13 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
..+++.+|+|+|||..+.. +...+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~-~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEG-LAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHH
Confidence 5699999999999986432 44444
No 126
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.91 E-value=0.063 Score=46.94 Aligned_cols=140 Identities=16% Similarity=0.083 Sum_probs=73.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEECCCCChHh
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~-L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 215 (504)
..+++..++|.|||.+++--++..+.. +.+|+|+.-.+. ...--.+.+.++. +.....--+.....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L~----v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPHG----VEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGGT----CEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhCC----cEEEEcccccccCCC
Confidence 368888999999999988777776655 677888832221 0000011223331 222211111111111
Q ss_pred H-HHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCc--HHHHHHHHHhcCCCCceEEecCCCcHHHH
Q 010672 216 V-RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (504)
Q Consensus 216 ~-~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~--~~~~~~il~~~~~~~~~i~~SAT~~~~~~ 292 (504)
. ...... .-..| ..... ...-..+++||+||+-..+..++ .+.+..++...+....+|+.+--.|+++.
T Consensus 97 ~~~~~~~~------a~~~l-~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTAA------CMAVW-QHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHHH------HHHHH-HHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHHH------HHHHH-HHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 0 000000 01111 11111 12225689999999976544432 45566677766667777777777788777
Q ss_pred HHHH
Q 010672 293 HLAR 296 (504)
Q Consensus 293 ~~~~ 296 (504)
+.+.
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 6654
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.87 E-value=0.042 Score=55.10 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=25.7
Q ss_pred cccEEEEcCccccccC-CcHHHHHHHHHhc-CCCCceEEecCCCcH
Q 010672 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQI-RPDRQTLYWSATWPK 289 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~-~~~~~~~~il~~~-~~~~~~i~~SAT~~~ 289 (504)
..++|+|||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 4679999999998763 2233444444443 344555555544333
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.87 E-value=0.069 Score=49.59 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998644
No 129
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.82 E-value=0.011 Score=51.67 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
++=.++.+|+|||||.- ++-++.+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 34478889999999965 33344333332 4668999886
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.044 Score=48.65 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=25.7
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
....+|||||+|.+.... ...+..++........+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 456799999999986432 34455556655555555555443
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.71 E-value=0.089 Score=43.64 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.8
Q ss_pred HhcCCcEEEEccCCCchHHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
+....++++.+|+|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3456789999999999998643
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.69 E-value=0.036 Score=51.89 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=30.6
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHH-HHHHHHH--HhcCCcEEEEccCCCchHHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPI-QAQGWPM--ALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~-Q~~~i~~--~l~~~~~l~~a~TGsGKT~~~ 153 (504)
|..+|+++.-.+..++.+...-. .+. ..+.+.. +...+.+++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567887666666666643210 000 0111111 123567999999999999864
No 133
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.62 E-value=0.022 Score=64.90 Aligned_cols=70 Identities=26% Similarity=0.253 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 121 ~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
++|+-|.++|..- +++++|.|..|||||.+.+--++..+.... ......++|++++|+..|.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6799999999754 789999999999999985544454444321 011245699999999999999988876
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.041 Score=53.90 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=22.5
Q ss_pred EEEEcCccccccCCcHHH-HHHHHHhcCCCCceEEecCCC
Q 010672 249 YLVLDEADRMLDMGFEPQ-IKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 249 ~lV~DEah~~~~~~~~~~-~~~il~~~~~~~~~i~~SAT~ 287 (504)
+|||||+|.+........ +..++... ....+|+.|...
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 899999999876532233 44554444 444455555443
No 135
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.56 E-value=0.015 Score=55.47 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=19.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
++++++.+|+|+|||..+.. +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57899999999999986443 444443
No 136
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.54 E-value=0.022 Score=51.65 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
.++.+++.+|+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.42 E-value=0.028 Score=55.11 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.2
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
.+++.+|+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999864
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.31 E-value=0.04 Score=52.72 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=26.4
Q ss_pred ccccEEEEcCccccc-cCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 245 ~~~~~lV~DEah~~~-~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
....+||+||+|.+. .. ....+..+++....+.++|+.+..
T Consensus 104 ~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEEEeCC
Confidence 367899999999986 33 244555666655555656664433
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.17 E-value=0.032 Score=52.88 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
.++++.+|+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998754
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.09 E-value=0.12 Score=49.30 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=30.5
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCchHHHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-----~~~~~l~~a~TGsGKT~~~~ 154 (504)
|..+|+++.-.+.+.+.+...-. .|. ..+.+. ..+.+++.+|+|+|||+.+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 44668887666666666643210 000 011111 13469999999999998643
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.02 E-value=0.13 Score=51.24 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=33.0
Q ss_pred cccEEEEcCccccccC-CcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhh
Q 010672 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~-~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.++++|+|.+=++... .....+..+.....++.-++.+.||...+....+..+.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 3678888888654322 12344555666666777777788876655555555443
No 142
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.22 Score=48.81 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=30.9
Q ss_pred CcCCcccCCCCHHHHHHHHHcCC---CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGF---FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~---~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~ 153 (504)
|-.+|++.+=-+...+.+...=. ..|--++.-. +..-+.+|+.+|+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 55789998655555555543211 0111111110 112367999999999999864
No 143
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.79 E-value=0.26 Score=47.73 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+.+++.+|+|+|||..+.
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 579999999999998644
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.33 E-value=0.16 Score=46.05 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=30.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
.|.-+++.+++|+|||..++- ++..+... +..++++.-. +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~-~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQ-FLWNGLKM-------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 456689999999999986443 33333221 3347776643 2344555555544
No 145
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.32 E-value=0.27 Score=47.11 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+|+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999998643
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.26 E-value=0.092 Score=49.64 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=30.2
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHH-H-HhcCCcEEEEccCCCchHHHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQA-QGWP-M-ALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~i~-~-~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
|..+|+++.=.+.+.+.+...-. .|... +.+. . +..++.+++.+|+|+|||+.+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 44668887655666655543200 00000 0010 0 1235679999999999998643
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.22 E-value=0.34 Score=43.30 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
.+++.+|+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 148
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.08 E-value=0.16 Score=50.17 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccc---cCCCC
Q 010672 338 LEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAA---RGLDV 410 (504)
Q Consensus 338 l~~~~~~~~~lIf~~s~~~~~~l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~---~Gvdi 410 (504)
+.....+.++||.++++.-+..+++.++. .++.+..+||+.+..++...++.+.+++.+|+|+|. .+. .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334567899999999999999999988 588999999999999999999999999999999994 331 12555
Q ss_pred CCCCEEEEcC
Q 010672 411 KDVKYVINYD 420 (504)
Q Consensus 411 ~~v~~VI~~~ 420 (504)
.++.+||.-.
T Consensus 138 ~~~~~iViDE 147 (414)
T 3oiy_A 138 KRFDFVFVDD 147 (414)
T ss_dssp CCCSEEEESC
T ss_pred ccccEEEEeC
Confidence 6778777533
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.05 E-value=0.084 Score=51.48 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
+..+++.+|+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999864
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.01 E-value=0.1 Score=50.39 Aligned_cols=42 Identities=7% Similarity=0.268 Sum_probs=28.0
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
.+.+++|+||+|.+ +......+.+++....+...+|+.|..+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 46789999999994 4333556677777766666566665544
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.96 E-value=0.22 Score=48.40 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=22.8
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
....+|||||+|.+.... ...+.++++..+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456799999999986432 334444555444444444443
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.13 Score=48.85 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=25.2
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
....+||+||+|.+.... ...+..++...+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 456799999999986432 3445555665555555555443
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.12 Score=48.81 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=25.6
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
....+++|+||||.|.... ...+.+.++.-++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3467899999999986543 344556666554455444444
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.095 Score=50.55 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=25.0
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
...+|++||+|.+.... ...+..++........+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 45799999999986432 3445556666555555555443
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.65 E-value=0.85 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+++.+|+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999998643
No 156
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.62 E-value=0.63 Score=45.59 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+|+.+|+|+|||+.+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 157
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.54 E-value=0.3 Score=43.64 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l 155 (504)
.|.-+++.+|+|+|||..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 356688899999999975443
No 158
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.11 Score=51.64 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhcCCcEEEEccCCCchHHHH
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~--~l~~~~~l~~a~TGsGKT~~~ 153 (504)
.|-.+|++.+=-+.+.+.|...=. .|.. .+.+.. +..-+.+|+.+|+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 456789998766667766654311 1110 011111 112467999999999999864
No 159
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.36 E-value=0.27 Score=55.41 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=66.4
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccccCCCCCCCC
Q 010672 340 DIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLDVKDVK 414 (504)
Q Consensus 340 ~~~~~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~Gvdi~~v~ 414 (504)
....+.+++|.|+|+.-|...++.+++ .++.+..+++..+..++..+++.+.+|..+|+|+| ..+...+++.++.
T Consensus 648 ~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~ 727 (1151)
T 2eyq_A 648 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 727 (1151)
T ss_dssp HHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE
T ss_pred HHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccc
Confidence 344567999999999999888887764 35788999999999999999999999999999999 6677778888888
Q ss_pred EEE
Q 010672 415 YVI 417 (504)
Q Consensus 415 ~VI 417 (504)
+||
T Consensus 728 lvI 730 (1151)
T 2eyq_A 728 LLI 730 (1151)
T ss_dssp EEE
T ss_pred eEE
Confidence 877
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.22 E-value=0.22 Score=48.25 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+.+|+.+|+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998644
No 161
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.07 E-value=0.32 Score=46.64 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=26.1
Q ss_pred ccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
...+++|+||+|.+.... ...+.++++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 357899999999986432 445666666665555555544
No 162
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.45 Score=46.86 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+|+.+|+|+|||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 67999999999999864
No 163
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.84 E-value=0.099 Score=44.80 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHhcCC--cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCC
Q 010672 123 TPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~ 200 (504)
.+-|..++..++... -.++.+.-|++||...+..++....+ .|..|.+|+|+..-.....+....
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~~~l------ 102 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQDERL------ 102 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCTTTC------
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhhcCc------
Confidence 456889998887654 36777999999998854444433333 277899999997655433222111
Q ss_pred ceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccccccCCcHHHHHHHHHhc-CCCCc
Q 010672 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQ 279 (504)
Q Consensus 201 ~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~~-~~~~~ 279 (504)
. + +++ +. ..+......+..=+++|||||-.|. ...+..+++.. ..+.|
T Consensus 103 -~-------------------~-~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 103 -S-------------------G-ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -S-------------------S-CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -C-------------------c-cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 0 0 011 11 1122223333455689999999986 44555555543 45677
Q ss_pred eEEecCC
Q 010672 280 TLYWSAT 286 (504)
Q Consensus 280 ~i~~SAT 286 (504)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8777544
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.83 E-value=0.26 Score=50.45 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=25.0
Q ss_pred cccEEEEcCccccccCC--cHHHHHHHHHhcCCCCceEEecCCC
Q 010672 246 RVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~--~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
...+|||||+|.+.... ....+..++.. ....+|+.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 45789999999987543 22444455444 344567777663
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.65 E-value=0.17 Score=50.70 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998644
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.48 Score=46.93 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCcCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHH
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~ 153 (504)
.|-.+|++.+=-+.+.+.+...= +..|--++... +...+.+|+.+|+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 35577888865555555553210 00111111100 112356999999999999864
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.55 E-value=0.42 Score=47.95 Aligned_cols=38 Identities=21% Similarity=0.053 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
|.-+++.|++|+|||..++-.+....... +..|+|+..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 44588889999999976554333332221 334777764
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.43 E-value=0.18 Score=47.90 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
...+++.+|+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999997643
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.23 E-value=0.21 Score=47.25 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=24.7
Q ss_pred cccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecC
Q 010672 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SA 285 (504)
...+|||||+|.+.... ...+.+++...++...+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 36799999999986432 3344555555555555565553
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.16 E-value=0.66 Score=46.37 Aligned_cols=37 Identities=24% Similarity=-0.022 Sum_probs=23.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
.-+++.|++|+|||..++-.+....... +..|+++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEC
Confidence 4488889999999976544333333221 334777764
No 171
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.12 E-value=0.87 Score=42.71 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
++-+++++++|+|||+....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688889999999986443
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.09 E-value=0.29 Score=48.17 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.9
Q ss_pred CcEEE--EccCCCchHHHH
Q 010672 137 RDLIG--IAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~--~a~TGsGKT~~~ 153 (504)
..+++ .+++|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 899999999864
No 173
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=91.82 E-value=1.5 Score=33.24 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=42.6
Q ss_pred EEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCC
Q 010672 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (504)
Q Consensus 347 ~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 395 (504)
.+||.+...-..++.+.++..|..+..++++.+...|.+-++.|...-.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 5678888888889999999999999999999999999999999986443
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.72 E-value=0.21 Score=58.64 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHhc------CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 130 WPMALK------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 130 i~~~l~------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
++.++. ++.+++.+|+|+|||..++..+.... . .+.+++|+....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~-------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEEccc
Confidence 555655 67899999999999987654333332 2 155688887653
No 175
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.71 E-value=0.21 Score=50.65 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
...+|+.+|+|+|||+.+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 3569999999999998643
No 176
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.54 E-value=1.5 Score=38.04 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.++++.-+..+.+.+... ++.+..++|+.+....... + .....|+|+| +.+.. .+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 346999999999999999998876 3778889998776544322 2 2357899999 33333 5667788
Q ss_pred cEEEEcC
Q 010672 248 TYLVLDE 254 (504)
Q Consensus 248 ~~lV~DE 254 (504)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887743
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.48 E-value=0.96 Score=39.89 Aligned_cols=20 Identities=30% Similarity=0.072 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
|.-+++.+++|+|||..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45688999999999976443
No 178
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.45 E-value=0.12 Score=50.07 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
++-+++.+++|+|||..++. ++..+... +.+++|+..-
T Consensus 61 G~iv~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALH-AVANAQAA-------GGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEECC
Confidence 45688999999999986544 33333321 3447777643
No 179
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.36 E-value=5.6 Score=37.63 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=30.2
Q ss_pred ChHHHHHHHHccCcccccccEEEEcCcccccc---CCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 229 T~~~l~~~l~~~~~~l~~~~~lV~DEah~~~~---~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
+...+.+.+..... .--+|||||+|.+.+ ..+...+..+.... +...+|+ +++
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~-~g~ 178 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIM-SGS 178 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEE-EES
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEE-EcC
Confidence 34455555543211 234899999999864 35666666666554 3344444 444
No 180
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.23 E-value=0.49 Score=53.04 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=65.3
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cccc---CCCCCCC
Q 010672 341 IMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAAR---GLDVKDV 413 (504)
Q Consensus 341 ~~~~~~~lIf~~s~~~~~~l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~---Gvdi~~v 413 (504)
...+.++||.++++.-|..+++.+++ .++.+..+||+.+..++...++.+.++..+|+|+|. .+.. -+++.++
T Consensus 118 ~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 118 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred HhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCc
Confidence 34566899999999999999999988 567899999999998999999999999999999993 3311 1456678
Q ss_pred CEEEEcC
Q 010672 414 KYVINYD 420 (504)
Q Consensus 414 ~~VI~~~ 420 (504)
.+||.-.
T Consensus 198 ~~lViDE 204 (1104)
T 4ddu_A 198 DFVFVDD 204 (1104)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 8887543
No 181
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.23 E-value=0.72 Score=46.47 Aligned_cols=65 Identities=8% Similarity=-0.004 Sum_probs=46.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCCCCCCCEEEEcC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD 420 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~~~Gvdi~~v~~VI~~~ 420 (504)
+.+|+|.|.+...++.+.+.|.+.++.+..+... . .+.. -.|.|+...+..|+-+|...++|...
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~--g~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASD--RGRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCT--TCEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCC--CcEEEEEcccccCcccCCCCEEEEEc
Confidence 4589999999999999999998888766544221 0 1222 34777777888999888888777644
No 182
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.15 E-value=0.94 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.3
Q ss_pred HhcCCcEEEEccCCCchHHHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~l 155 (504)
+..|.-+++.+|+|+|||+.+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 44667799999999999986544
No 183
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.12 E-value=0.78 Score=41.23 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCchHHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l 155 (504)
.|.-+++.+|+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 356688999999999986544
No 184
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.08 E-value=0.22 Score=45.25 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=25.6
Q ss_pred ccccEEEEcCcccccc-----CCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 245 RRVTYLVLDEADRMLD-----MGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~-----~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
.+.++||+||.-.+++ ......+..++..++..-.+++++.-
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4578999999998775 33344466666665432334444433
No 185
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.82 E-value=1.2 Score=40.49 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc------ccCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA------ARGLDVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~------~~Gvdi~~ 412 (504)
..++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ....+|+|+|. .+ ...+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999998888777653 78899999998865544333 24688999993 22 14577888
Q ss_pred CCEEEEc
Q 010672 413 VKYVINY 419 (504)
Q Consensus 413 v~~VI~~ 419 (504)
+++||.-
T Consensus 187 ~~~lViD 193 (249)
T 3ber_A 187 LKYLVMD 193 (249)
T ss_dssp CCEEEEC
T ss_pred cCEEEEc
Confidence 8887753
No 186
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.82 E-value=0.78 Score=40.63 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=53.4
Q ss_pred CeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCCC
Q 010672 345 SRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 413 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~~-----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~v 413 (504)
.++||.|+++.-+..+++.+++. +..+..++|+.+..++.. .+.++..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877653 688999999988765543 34456789999993 22 234667778
Q ss_pred CEEEE
Q 010672 414 KYVIN 418 (504)
Q Consensus 414 ~~VI~ 418 (504)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88775
No 187
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.79 E-value=0.85 Score=46.63 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=55.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
..+++||.++++.-+....+.|+..++.+..+|++.+..++..++..+..+..+||++|.
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 356899999999999999999999999999999999999999999999999999999993
No 188
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.64 E-value=0.35 Score=51.92 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCC-CCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHH
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAGF-FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~-~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~ 153 (504)
.|..+|++++--+.+.+.|...-. ...+|.+-..+ -+...+.+|+.+|+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 355678888777777777764311 11111110000 0112356999999999999753
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.31 E-value=2.4 Score=39.68 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=28.1
Q ss_pred ccccEEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHH
Q 010672 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (504)
Q Consensus 245 ~~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~ 296 (504)
.++++||+||.-.+.. ......+..+...+.++.-++.+.++-..+..+.++
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 4678999999954332 112334445555555655455566654443333333
No 190
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.93 E-value=0.89 Score=47.24 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHH--hcCCCcEEEEcc
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF--KAGKSPIMTATD 402 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f--~~g~~~vLVaT~ 402 (504)
..+.+||.++++.-+....+.|+..++.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999999998888 578899999995
No 191
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.84 E-value=0.4 Score=45.19 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
++++.+|+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.83 E-value=0.51 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
.++++++|+|+|||..+-. +...+
T Consensus 192 ~~vlL~G~pG~GKT~la~~-la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG-LAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH-HHHHH
T ss_pred CceEEEcCCCCCHHHHHHH-HHHHH
Confidence 4699999999999986443 33343
No 193
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.73 E-value=0.51 Score=45.77 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=24.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
+.-+++.+++|+|||..++- ++..+... +..++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal~-la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALA-IVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHH-HHHHHHHC-------CCeEEEEECC
Confidence 45588889999999976544 44443331 3347777654
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.59 E-value=0.79 Score=43.62 Aligned_cols=66 Identities=20% Similarity=0.095 Sum_probs=35.2
Q ss_pred HHHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 010672 128 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (504)
Q Consensus 128 ~~i~~~l~-----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L-~~q~~~~~~~~ 195 (504)
..++.++. +.-+++.+++|+|||..++- ++..+.... ...+.+.+++|+.-...+ ..++.+.+.++
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~-la~~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQ-LSVNVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHH-HHHHTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHH-HHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34556663 45688999999999976444 332222110 001114467887654322 34455455554
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.40 E-value=0.44 Score=49.05 Aligned_cols=20 Identities=35% Similarity=0.222 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+..+++.+|+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36679999999999998543
No 196
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.12 E-value=0.33 Score=40.01 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~ 152 (504)
+....++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999974
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.98 E-value=0.28 Score=47.48 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=24.6
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
++-+++.+++|+|||..++- ++..+... +.+++|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~-la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeC
Confidence 45688999999999987554 33333321 345777775
No 198
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.94 E-value=0.32 Score=46.94 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
|.-+++.+|+|+|||..++ .++..+... +.+++++..-.
T Consensus 61 G~i~~I~GppGsGKSTLal-~la~~~~~~-------gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLAL-HAIAEAQKM-------GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEeccc
Confidence 3458888999999997643 344443331 34577776543
No 199
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.80 E-value=1.3 Score=37.16 Aligned_cols=74 Identities=14% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.++++..+..+.+.+... ++.+..++|+.+....... +. ....|+|+| +.+. ...++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAA-RGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-TTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCchhcC
Confidence 346999999999999999998875 4778889998765544322 22 357899999 3333 35667788
Q ss_pred cEEEEcCc
Q 010672 248 TYLVLDEA 255 (504)
Q Consensus 248 ~~lV~DEa 255 (504)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88886543
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.72 E-value=0.36 Score=46.21 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
|.-+++.|++|+|||..++-.+. ++... +..|+|++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~-~~a~~-------g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVL-SALND-------DRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHH-HHHHT-------TCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeC
Confidence 44588889999999976544333 33321 556888765
No 201
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.50 E-value=1.1 Score=39.87 Aligned_cols=19 Identities=32% Similarity=0.115 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (504)
.|.-+.+.+|+|+|||+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999753
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.25 E-value=2.3 Score=45.63 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
..++++.+|+|+|||..+-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4579999999999998644
No 203
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.13 E-value=0.48 Score=46.97 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCchHHHH
Q 010672 95 PKPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 95 p~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~ 153 (504)
..|..+|++.+-.+.+.+.+...= +..|.-++... +-..+.+|+.+|+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 456788999987777777765321 11111111111 112367999999999999863
No 204
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.88 E-value=1.8 Score=36.72 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.|+++..+..+.+.+.+. ++.+..++|+.+....... +. ...+|+|+| +.+ ....++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cch-hcCCCcccC
Confidence 567999999999999998888775 4778889998776554332 22 357899999 222 235667788
Q ss_pred cEEEEcC
Q 010672 248 TYLVLDE 254 (504)
Q Consensus 248 ~~lV~DE 254 (504)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.58 E-value=5.9 Score=37.16 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++.+++|+|||+...
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 37788999999998644
No 206
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.39 E-value=1.1 Score=40.08 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~-----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~ 412 (504)
..++||.|+++.-+..+++.++.. ++.+..++|+.+..++...+ ...+|+|+|. .+ ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 458999999999999988888753 67888999998876654433 2578999994 22 23456667
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777764
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.22 E-value=1 Score=53.01 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=31.3
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~ 189 (504)
.++.+++.+++|+|||..++..+...+.. +.+++|+.-. ++..++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT-SCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEcc-ccHHHHH
Confidence 56789999999999998766544444332 5568887654 4444454
No 208
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.10 E-value=0.77 Score=43.31 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=49.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 217 (504)
-+++.+|+|+|||..++- ++..+... +.+.+++|+..-..+... .+++++....
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~~-----g~g~~vlyId~E~s~~~~---ra~~lGvd~d----------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMRQ-----YPDAVCLFYDSEFGITPA---YLRSMGVDPE----------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHHH-----CTTCEEEEEESSCCCCHH---HHHHTTCCGG-----------------
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHhc-----CCCceEEEEeccchhhHH---HHHHhCCCHH-----------------
Confidence 478889999999987554 33333321 114568888775544321 3455542211
Q ss_pred HHhcCCcEEEeC---hHHH-HHHHHcc-CcccccccEEEEcCccccc
Q 010672 218 DLQKGVEIVIAT---PGRL-IDMLESH-NTNLRRVTYLVLDEADRML 259 (504)
Q Consensus 218 ~~~~~~~Iiv~T---~~~l-~~~l~~~-~~~l~~~~~lV~DEah~~~ 259 (504)
+++++. .+.+ +..+..- ...-..+++||+|-+..+.
T Consensus 84 ------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 233333 2333 3322211 1222468999999999875
No 209
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.72 E-value=2.1 Score=41.45 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~-----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~ 412 (504)
..++||.|+++.-+..+++.+++. ++.+..++|+.+..+.... +.++..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988887653 7889999999887665443 4456789999993 33 23466778
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888774
No 210
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.60 E-value=0.81 Score=44.18 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.+..+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344688999999999975
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.59 E-value=0.45 Score=43.83 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.3
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~ 152 (504)
+..+.-+++++|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34566788999999999975
No 212
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.57 E-value=1.8 Score=36.36 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=52.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.++++.-+..+.+.+.+. ++.+..++|+.+....... +. ....|+|+| +.+. ...++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGT-TTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhh-cCCCcccC
Confidence 456999999999999999988875 3678888988775544322 22 357899999 3332 35567788
Q ss_pred cEEEEcCc
Q 010672 248 TYLVLDEA 255 (504)
Q Consensus 248 ~~lV~DEa 255 (504)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88877443
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.47 E-value=1.4 Score=41.94 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred cccEEEEcCcccccc-CCcHHHHHHHHHhcCCCCceEEecCCCcHHHHHHHHHhh
Q 010672 246 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 246 ~~~~lV~DEah~~~~-~~~~~~~~~il~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
..+++++|.+-+... ......+..+...+.++..++.+.++...++.+.+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 456788998876542 334556666666677788888888887666666665553
No 214
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.37 E-value=1.8 Score=37.24 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHh---HHHHh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.++++.-+..+.+.+... ++.+..++|+.+.... ...+. ....|+|+| +.+.. .+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCcccC
Confidence 566999999999999999888875 4778888888764433 22332 357899999 22222 4566778
Q ss_pred cEEEEc
Q 010672 248 TYLVLD 253 (504)
Q Consensus 248 ~~lV~D 253 (504)
++||.=
T Consensus 116 ~~VI~~ 121 (185)
T 2jgn_A 116 KHVINF 121 (185)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 877763
No 215
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.05 E-value=4.5 Score=36.25 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=53.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----c-cCCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKDV 413 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~-~Gvdi~~v 413 (504)
+.++||.++++.-+..+.+.++. .++.+..++|+.+.......+.. ..+|+|+|. .+ . ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777654 47889999999987766554432 478999994 22 2 34577888
Q ss_pred CEEEEc
Q 010672 414 KYVINY 419 (504)
Q Consensus 414 ~~VI~~ 419 (504)
.+||.-
T Consensus 178 ~~lViD 183 (242)
T 3fe2_A 178 TYLVLD 183 (242)
T ss_dssp CEEEET
T ss_pred cEEEEe
Confidence 888753
No 216
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=85.88 E-value=1.6 Score=49.38 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=49.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 218 (504)
-+|.|..|||||.+.+--+...+... ..+..+|+|||.. +.-+..+.+.... +.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q-~TFt~~~rl~~~l---~~----------------- 57 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ-MTFLMEYELAKTP---DM----------------- 57 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG-GHHHHHHHHTCCS---SC-----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc-ccHHHHHHHHHhh---hh-----------------
Confidence 36889999999988554343333332 1246699999975 3223333333221 10
Q ss_pred HhcCCcEEEeChHHHHHHHHccCcccccccEEEEcCccc
Q 010672 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (504)
Q Consensus 219 ~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV~DEah~ 257 (504)
....++-|.|..+|...+.+... ....-++|+.+.
T Consensus 58 -~~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 58 -GGMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp -SEESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred -cceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 00136889999998654433211 123456777764
No 217
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.76 E-value=2.2 Score=37.59 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=52.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH---h-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...+...+ . ...+|+||| +.+. ...++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCccC
Confidence 346999999999999999988875 37788899988765543332 2 347899999 3333 35667788
Q ss_pred cEEEE
Q 010672 248 TYLVL 252 (504)
Q Consensus 248 ~~lV~ 252 (504)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 218
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.55 E-value=2.6 Score=37.34 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=48.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 413 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~v 413 (504)
.+.++||.++++.-+..+++.++. .++.+..++|+.+..++...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 345799999999999999988876 367888899887655443332 2 3478999993 22 235667778
Q ss_pred CEEEE
Q 010672 414 KYVIN 418 (504)
Q Consensus 414 ~~VI~ 418 (504)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87774
No 219
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.09 E-value=3.3 Score=36.90 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=49.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----cc--CCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR--GLDVK 411 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~~--Gvdi~ 411 (504)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+.......+ ...+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3458999999999999988888764 47888899987655443322 3678999993 22 12 36667
Q ss_pred CCCEEEE
Q 010672 412 DVKYVIN 418 (504)
Q Consensus 412 ~v~~VI~ 418 (504)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777774
No 220
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.95 E-value=1.7 Score=41.65 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHH-HHHHHHHHHHh
Q 010672 129 GWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (504)
Q Consensus 129 ~i~~~l~-----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L-~~q~~~~~~~~ 195 (504)
.++.++. |.-+++.+++|+|||..++- ++..... +....+.+..++|+.....+ ..++.+.+..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~-la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHT-LCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHH-HHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH-HHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 4666664 34588899999999976443 3322211 11011124568887754321 23444444444
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.92 E-value=3.4 Score=44.33 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.6
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+|||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998644
No 222
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.51 E-value=3.1 Score=35.18 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=52.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.|+++.-+..+.+.+... ++.+..++|+.+....... +. ....|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 446999999999999999998875 4778888988766544322 22 3578999993 22 235667788
Q ss_pred cEEEEcCc
Q 010672 248 TYLVLDEA 255 (504)
Q Consensus 248 ~~lV~DEa 255 (504)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88886443
No 223
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.48 E-value=1.3 Score=51.46 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=53.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 216 (504)
+-+.+.+|.|||||+.++- ++...... +..++++.+-.+|.... +++++-...
T Consensus 1432 ~~iei~g~~~sGkttl~~~-~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID---------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG----------------
T ss_pred CEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH----------------
Confidence 5588999999999987544 45444432 56688888866665443 555543321
Q ss_pred HHHhcCCcEEEeCh---HHHHHHHHccCcccccccEEEEcCcccccc
Q 010672 217 RDLQKGVEIVIATP---GRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (504)
Q Consensus 217 ~~~~~~~~Iiv~T~---~~l~~~l~~~~~~l~~~~~lV~DEah~~~~ 260 (504)
+++++-| +..+..++. ...-..+++||+|.+-.+..
T Consensus 1485 -------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 -------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred -------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 3666666 333332222 11123578999999987654
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.24 E-value=1.3 Score=47.51 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+|+.+|+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.17 E-value=0.87 Score=45.16 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
-+.+|+.+|+|+|||+.+-
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999998643
No 226
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.12 E-value=1 Score=44.74 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=32.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~ 186 (504)
..++++.|+||||||.. +..++..+... +..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 47899999999999986 44455555442 566899999888854
No 227
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.08 E-value=3 Score=37.32 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=44.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-cCCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKDV 413 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~-~Gvdi~~v 413 (504)
..++||.++++..+..+++.++.. +..+..++|+.+... ..+.+..+..+|+|+|. .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999988888653 567777888765432 23445567789999993 222 33566778
Q ss_pred CEEEE
Q 010672 414 KYVIN 418 (504)
Q Consensus 414 ~~VI~ 418 (504)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.65 E-value=9.8 Score=37.44 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
-+++++++|+|||+....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466779999999986443
No 229
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.24 E-value=3.4 Score=35.82 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----c-cCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----A-RGLDVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~-----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~-~Gvdi~~ 412 (504)
..++||.|+++.-+..+++.++.. +..+..++|+.+..+.... + ....+|+|+|. .+ . ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999998888877642 5778889998876544322 2 35678999994 22 2 2346667
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 787774
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.20 E-value=2.1 Score=42.17 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHHhc--CCcEEEEccCCCchHHH
Q 010672 126 QAQGWPMALK--GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 126 Q~~~i~~~l~--~~~~l~~a~TGsGKT~~ 152 (504)
+..++..++. +.-+++++|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444444333 33478999999999975
No 231
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.03 E-value=5 Score=39.12 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=53.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCccccc
Q 010672 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRR 246 (504)
Q Consensus 171 ~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~ 246 (504)
.+.++||.++++.-+..+.+.+.+. ++.+..++|+.+....... + ....+|+||| +.+.. ..++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCccc
Confidence 3677999999999999999988875 3678888888875544322 2 2357899999 44443 566778
Q ss_pred ccEEEE
Q 010672 247 VTYLVL 252 (504)
Q Consensus 247 ~~~lV~ 252 (504)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 232
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.89 E-value=1.3 Score=34.29 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+.+.+..+.++.+++|||.+-..+...+..|++.|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3444555556678999999988899999999999999999988754
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.43 E-value=3.3 Score=44.70 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (504)
.++.+++.+|+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999753
No 234
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.16 E-value=2.1 Score=41.15 Aligned_cols=27 Identities=26% Similarity=0.032 Sum_probs=18.9
Q ss_pred HHHHHhc-----CCcEEEEccCCCchHHHHHH
Q 010672 129 GWPMALK-----GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 129 ~i~~~l~-----~~~~l~~a~TGsGKT~~~~l 155 (504)
.++.++. |.-+.+.+|+|+|||..+..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 3455553 34588899999999976443
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=82.07 E-value=4.2 Score=41.12 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=21.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
.+++++++|+|||+.+.- +..++... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~k-LA~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK-LAYYYQRK-------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHhC-------CCeEEEEec
Confidence 377889999999986443 33333331 445666654
No 236
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.97 E-value=1.4 Score=41.76 Aligned_cols=68 Identities=18% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHhc-----CCcEEEEccCCCchHHHHHHHHHHHHhcC----CCCCCCCC----CEEEEEcccHHH-HHHHHHHHH
Q 010672 128 QGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQ----PFLAPGDG----PIVLVLAPTREL-AVQIQQEST 193 (504)
Q Consensus 128 ~~i~~~l~-----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~~----~~vlil~Pt~~L-~~q~~~~~~ 193 (504)
..++.++. +.-+++.+++|+|||..++-.+....... .......+ .+++|+.--..+ ..++.+.+.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 34555664 34588999999999976544333211110 00000112 568887754332 445555555
Q ss_pred Hh
Q 010672 194 KF 195 (504)
Q Consensus 194 ~~ 195 (504)
++
T Consensus 165 ~~ 166 (322)
T 2i1q_A 165 HA 166 (322)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 237
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=81.43 E-value=2 Score=34.42 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCC-CeEEEEe-CCcccHHHHHHHHhhCCCCeEEecCCCCH
Q 010672 332 NKLVKLLEDIMDG-SRILIFM-DTKKGCDQITRQLRMDGWPALSIHGDKSQ 380 (504)
Q Consensus 332 ~~l~~~l~~~~~~-~~~lIf~-~s~~~~~~l~~~L~~~~~~~~~ih~~~~~ 380 (504)
..+...+..+.++ .+++|+| .+-..+...+..|+..|+++..+.|++..
T Consensus 76 ~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 76 KDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3444445555566 7899999 57777889999999999999999998653
No 238
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.29 E-value=1.6 Score=38.56 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~ 412 (504)
...++||.++++..+..+++.++. .++.+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887765 36788889998765443332 22 378999994 22 34566777
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+.+||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 239
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.00 E-value=17 Score=32.42 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=49.8
Q ss_pred CeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCCCC
Q 010672 345 SRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVK 414 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~v~ 414 (504)
.++||.|+++.-+..+++.++. .++.+..++|+.+.......+ ....+|+|+|. .+ ...+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 4899999999999888887765 356788889888755433322 34678999994 33 2245677788
Q ss_pred EEEE
Q 010672 415 YVIN 418 (504)
Q Consensus 415 ~VI~ 418 (504)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 240
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.93 E-value=4.6 Score=34.94 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=51.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCCCCE
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDVKY 415 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~v~~ 415 (504)
..++||.|+++..+..+++.++.. .+.+..++|+.+.......+. ...+|+|+|. .+ ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999988765 467888898887554443332 2578999994 22 23466777888
Q ss_pred EEE
Q 010672 416 VIN 418 (504)
Q Consensus 416 VI~ 418 (504)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 241
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=80.92 E-value=4.6 Score=40.00 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC-CC---CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccc-----CCCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMD-GW---PALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----GLDVKD 412 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~-~~---~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~-----Gvdi~~ 412 (504)
...++||.|+++.-+..+++.+++. +. .+..+||+....++..... ..+|+|+| +.+.. -++..+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4678999999999999888888765 55 8899999998877655443 46799999 44332 456677
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 887774
No 242
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.46 E-value=3.7 Score=38.43 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=53.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH----hcCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~----~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+...+...+ ....+|+||| +.+.. .+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccce
Confidence 445999999999998888887664 47888999998776554333 2357899999 43333 5667788
Q ss_pred cEEEEcCc
Q 010672 248 TYLVLDEA 255 (504)
Q Consensus 248 ~~lV~DEa 255 (504)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88885443
No 243
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=80.09 E-value=3.7 Score=45.78 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=57.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCC----CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccCCC-CCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRM----DGW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGLD-VKD 412 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~----~~~----~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~~~Gvd-i~~ 412 (504)
.+.++||.++++.-|..+++.++. .++ .+..+||+.+..++....+.+.+ .+|+|+|. .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999888888764 356 78999999999888888887777 89999994 3332222 557
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 244
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=79.33 E-value=11 Score=34.08 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=51.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc--ccCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VA--ARGLDVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~--~~Gvdi~~ 412 (504)
+.++||.++++.-|..+++.+++ .+..+..++|+......... +..+ .+|+|+|. .+ ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 45799999999999998888876 35677888898876554433 3333 88999993 11 12467788
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 245
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.02 E-value=14 Score=37.59 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+++.-+..+.+.+.+... .++.+..++++......... + ....+|+||| +.+. ..+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGA-RGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGT-SSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhh-cCCCcccC
Confidence 56799999999999999999987642 24778888998876554332 2 2457899999 3333 35677788
Q ss_pred cEEEEcCc
Q 010672 248 TYLVLDEA 255 (504)
Q Consensus 248 ~~lV~DEa 255 (504)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88876543
No 246
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.94 E-value=2.2 Score=37.62 Aligned_cols=30 Identities=27% Similarity=0.175 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHH
Q 010672 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~ 152 (504)
+.-|..++..+..|.-+.+.+|.|||||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445777888888888899999999999975
No 247
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.07 E-value=4.3 Score=40.78 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=29.0
Q ss_pred cccEEEEcCccccccC-CcHHHHHHHHH---hcC---CCCceEEecCCCcHHHHHHHHHhh
Q 010672 246 RVTYLVLDEADRMLDM-GFEPQIKKILS---QIR---PDRQTLYWSATWPKEVEHLARQYL 299 (504)
Q Consensus 246 ~~~~lV~DEah~~~~~-~~~~~~~~il~---~~~---~~~~~i~~SAT~~~~~~~~~~~~~ 299 (504)
.++++++|=+=++... .....+.+++. .+. +..-++.++||...+....++.+.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 4678899987664321 12223333332 221 333467888887765555555553
No 248
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=77.97 E-value=3.6 Score=39.57 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
...++++.+|+|+|||+++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998644
No 249
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.95 E-value=3 Score=37.84 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
.+.+++.+|+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999764
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.92 E-value=11 Score=35.18 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
-+++.+++|+|||+.+..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466779999999986443
No 251
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.26 E-value=2 Score=43.56 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=25.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchHHH
Q 010672 112 QEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 112 ~~l~~~~~~~~~~~Q~~~i~~-~l~~~~~l~~a~TGsGKT~~ 152 (504)
..+.+.|. +.+.+...+.. +..+..+++++|||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444442 34444444544 44677899999999999974
No 252
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.81 E-value=2 Score=39.29 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCchHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~ 153 (504)
.....+++.+|+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34578999999999999753
No 253
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.75 E-value=4.3 Score=38.40 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=29.9
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCchHHHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l-----~~~~~l~~a~TGsGKT~~~~ 154 (504)
|..+|+++.=.+.+.+.+...-. .|.+ .+.+. ..+.+++.+|+|+|||+.+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 44678888656666666643100 0000 01122 12569999999999998643
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.69 E-value=2.6 Score=41.18 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHH
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~ 183 (504)
.+.++++.++||+|||...-. ++..+... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcC
Confidence 457899999999999976433 33333321 456888888654
No 255
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=76.65 E-value=1.4 Score=39.03 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=47.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC--------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----cc-cCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-V----AA-RGLD 409 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~--------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~----~~-~Gvd 409 (504)
..++||.++++.-+..+++.+++. ++.+..++|+.+..+... .+ ....+|+|+|. . +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888877542 577888888875433211 11 23678999993 2 22 2355
Q ss_pred CCCCCEEEE
Q 010672 410 VKDVKYVIN 418 (504)
Q Consensus 410 i~~v~~VI~ 418 (504)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777764
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.39 E-value=1.7 Score=39.09 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=29.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~ 195 (504)
|.-+++.|++|+|||..++-.+.+.+... +..++|++-. +-..++.+.+..+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 45589999999999976544333333321 3346776543 2344455554443
No 257
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=76.37 E-value=2.2 Score=33.93 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCeEEEEeCCccc--HHHHHHHHhhCCCCeEEecCCCC
Q 010672 334 LVKLLEDIMDGSRILIFMDTKKG--CDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 334 l~~~l~~~~~~~~~lIf~~s~~~--~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+...+..+.++.+++|+|.+-.. +...+..|+..|+.+..+.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33445555566789999999877 88999999999999888888753
No 258
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.24 E-value=4.6 Score=37.42 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+++.+|+|+|||+.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998643
No 259
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.09 E-value=18 Score=37.06 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=56.6
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+|+.-+..+.+.+.+... .++.+..++|+......... + ....+|+||| +.+. ..+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~-~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGA-RGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGT-SSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhh-cCCCcccC
Confidence 56799999999999999999987642 25778889998776554322 2 2457899999 3333 35677888
Q ss_pred cEEEEcCcc
Q 010672 248 TYLVLDEAD 256 (504)
Q Consensus 248 ~~lV~DEah 256 (504)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 888865543
No 260
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=75.74 E-value=2 Score=41.34 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778887 666699999999873
No 261
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=75.60 E-value=1.1 Score=51.16 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=29.6
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
+++-++||+|||=.-+|...+..+.+.+.....++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34567899999988888776777777777766666555554
No 262
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=74.89 E-value=3.6 Score=40.91 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
+.++||.||+++-++.+++.+.+. ++.+..++|.. .......+. ...+|+||| +.+.. ..++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT-----~v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILAT-----DIAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEES-----SSTTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEEC-----Chhhe-eeccC-ceEE
Confidence 456999999999999999999886 46788888843 333333433 357899999 44433 45666 7877
Q ss_pred EE
Q 010672 251 VL 252 (504)
Q Consensus 251 V~ 252 (504)
|.
T Consensus 245 I~ 246 (440)
T 1yks_A 245 LD 246 (440)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 263
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=74.88 E-value=3.8 Score=30.55 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=32.6
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 340 ~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
.+.+ .+++|+|.+-..+...+..|+..|+.+..+.|++.
T Consensus 50 ~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 50 GLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred hCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 3345 78999999988899999999999999778888764
No 264
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.83 E-value=1.8 Score=36.95 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.++-+++++|+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999985
No 265
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=74.70 E-value=3.4 Score=31.74 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=35.3
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010672 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~ 379 (504)
..+..+.++.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 34444556678999999988899999999999995 778888764
No 266
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.61 E-value=0.9 Score=42.06 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=26.0
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCcEEEEccCCCchHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA--LKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~~--l~~~~~l~~a~TGsGKT~~ 152 (504)
|-.+|++++-.+.+.+.+...-. .|+. .+++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 44678888766666666653211 1221 1222221 1124599999999999975
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.58 E-value=3.1 Score=39.29 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=24.5
Q ss_pred cCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
.|.-+++.|++|+|||..++-.+. ++..+ +..+++++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~-~~a~~-------g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAK-NMSDN-------DDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH-HHHTT-------TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEEC
Confidence 345588999999999976444333 33321 356888764
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.51 E-value=1.9 Score=37.44 Aligned_cols=20 Identities=20% Similarity=0.022 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
.++.+++++++|||||+++-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45679999999999998644
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.42 E-value=1.7 Score=43.91 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCcEEEEccCCCchHHH
Q 010672 127 AQGWPMALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 127 ~~~i~~~l~~~~~l~~a~TGsGKT~~ 152 (504)
..++..+..+.++++.+|+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 33444566788999999999999975
No 270
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.24 E-value=25 Score=36.76 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=57.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+|+..++.+.+.+.+.+ +.+..++++......... +. ...+|+|||. .+ ...+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIG----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcC----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 5689999999999999999988863 677778877665444332 22 3578999993 33 335677889
Q ss_pred cEEEEcCccccc
Q 010672 248 TYLVLDEADRML 259 (504)
Q Consensus 248 ~~lV~DEah~~~ 259 (504)
++||+-|++...
T Consensus 515 ~lVi~~d~d~~G 526 (661)
T 2d7d_A 515 SLVAILDADKEG 526 (661)
T ss_dssp EEEEETTTTCCT
T ss_pred CEEEEeCccccc
Confidence 999999987653
No 271
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.20 E-value=7.3 Score=37.74 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+....... +. ...+|+||| +.+. ...++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-SSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cccc-cCCCccCC
Confidence 457999999999999999999876 3677888888776554332 22 357899999 3333 36678888
Q ss_pred cEEEEcC
Q 010672 248 TYLVLDE 254 (504)
Q Consensus 248 ~~lV~DE 254 (504)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9888543
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=74.17 E-value=1.5 Score=37.14 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++++++|||||+++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998643
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.14 E-value=1.7 Score=41.32 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+-++|++|||+|||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358889999999998644
No 274
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=74.11 E-value=6.7 Score=36.32 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
...+++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999998643
No 275
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.10 E-value=1.6 Score=41.34 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.1
Q ss_pred HHhcCCcEEEEccCCCchHHHH
Q 010672 132 MALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 132 ~~l~~~~~l~~a~TGsGKT~~~ 153 (504)
.+..+.++++.+|+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445789999999999999754
No 276
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=74.06 E-value=6.9 Score=28.37 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHhh--cCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010672 336 KLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (504)
Q Consensus 336 ~~l~~~--~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~ 379 (504)
+.+.++ .++.+++|+|.+-..+...+..|++.|+. +..+ |++.
T Consensus 31 ~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 31 ERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 344444 45678999999988899999999999986 4455 6643
No 277
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.00 E-value=11 Score=38.25 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=28.9
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
..|.-+++.+++|+|||..... ++..+.. .+.+++++++... ..|+...+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~-------~G~~vi~~~~ee~-~~~l~~~~~~ 330 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSR-FVENACA-------NKERAILFAYEES-RAQLLRNAYS 330 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHHHh-------CCCCEEEEEEeCC-HHHHHHHHHH
Confidence 3456688999999999975433 2222221 1334677765422 2345444433
No 278
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.71 E-value=3.3 Score=36.86 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.3
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
++++.++.|+|||..++-
T Consensus 8 ~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 488899999999988554
No 279
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.64 E-value=2.5 Score=40.10 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445678887 666699999999873
No 280
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.52 E-value=6.8 Score=35.81 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHH-HHHHhcCC-----cEEEEccCCCchHHHHH
Q 010672 108 DYVMQEISKAGFFEPTPIQAQG-WPMALKGR-----DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~Q~~~-i~~~l~~~-----~~l~~a~TGsGKT~~~~ 154 (504)
..+.+-|+-+|+ .|++... +..++.++ .+++.+|+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 467777877776 4666444 34445443 38899999999998654
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.03 E-value=1.6 Score=36.63 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++++++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998643
No 282
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=73.03 E-value=2.5 Score=40.50 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=20.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 128 ~~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
..+..++.|.+ +++-++||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 35666788887 666699999999874
No 283
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.02 E-value=2.5 Score=40.57 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 128 ~~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
..+..++.|.+ +++-++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36677788887 566699999999874
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.96 E-value=2.2 Score=36.44 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
.+.+++++++|||||+++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45689999999999987543
No 285
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.93 E-value=2.3 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++.++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445677877 666699999999873
No 286
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.76 E-value=2.4 Score=40.91 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~ 152 (504)
+..|..+++++|||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45688899999999999984
No 287
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.73 E-value=2.6 Score=41.29 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.3
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++-++||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344667877 666699999999874
No 288
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=72.71 E-value=2.4 Score=32.50 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=33.1
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCC
Q 010672 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (504)
Q Consensus 340 ~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~ 378 (504)
++.++.+++|+|.+-..+...+..|++.|+.+..+.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 344567899999998889999999999999988888775
No 289
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.56 E-value=1.8 Score=37.77 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 290
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=72.53 E-value=8.5 Score=36.92 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=55.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHH---HHh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.++++.-+..+.+.+.+. ++.+..++|+.+...... .+. ...+|+|+|. .+ ....++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 567999999999999999998875 366788888876554432 222 3578999993 33 346678889
Q ss_pred cEEEEcCccc
Q 010672 248 TYLVLDEADR 257 (504)
Q Consensus 248 ~~lV~DEah~ 257 (504)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9998766554
No 291
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=72.47 E-value=10 Score=36.46 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKD 412 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~ 412 (504)
...++||.|+++.-+..+++.+.. .++.+..++|+.+..+....+. ..+|+|+|. .+ ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887754 4678899999988766555443 467999993 22 22455667
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=72.31 E-value=2 Score=36.46 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCchHHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~ 154 (504)
...+.+++++++|||||+++-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 345679999999999998644
No 293
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.27 E-value=2.8 Score=41.01 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666788887 566699999999884
No 294
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=72.13 E-value=2.8 Score=39.81 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 128 ~~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
..+..++.|.+ +++-++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 45666788887 666699999999873
No 295
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.11 E-value=5 Score=40.87 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccc----cC-C-CCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAA----RG-L-DVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~----~G-v-di~~ 412 (504)
..++||.|+++.-+..+.+.++.. ++.+..+||+.+...+...+. ...+|+|+| ..+. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888777654 899999999987655433222 136799999 3332 22 3 5677
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 296
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=72.09 E-value=2.8 Score=40.52 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678887 666699999999873
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=72.09 E-value=1.7 Score=39.40 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=29.5
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchHHHH
Q 010672 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 97 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~l--~~~~~l~~a~TGsGKT~~~ 153 (504)
|..+|+++.-.+.....++..... . -...++..+- -.+.+++.+|+|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 456788876566665555432110 0 0112222211 1245999999999999753
No 298
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=72.08 E-value=9.3 Score=36.18 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.++++.-+..+.+.+.+. ++.+..++|+.+....... + ....+|+|+|. .+.. ..++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 556999999999999999998875 3677888888765544322 2 23578999993 3322 4566778
Q ss_pred cEEEEcC
Q 010672 248 TYLVLDE 254 (504)
Q Consensus 248 ~~lV~DE 254 (504)
++||.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887644
No 299
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.96 E-value=2.8 Score=40.28 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=19.6
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 128 ~~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
..+..++.|.+ +++-++||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556678887 566699999999873
No 300
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.83 E-value=2.9 Score=40.08 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=18.3
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++-++||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345677877 666699999999873
No 301
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.83 E-value=2.9 Score=40.10 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4455678887 666699999999874
No 302
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=71.68 E-value=2.6 Score=31.93 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 341 ~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+.++.+++|+|.+-..+...+..|++.|+++..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 345678999999988899999999999998888888753
No 303
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.38 E-value=2.9 Score=40.30 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++.++||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678887 666699999999873
No 304
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.34 E-value=3 Score=40.23 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++-++||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445677877 666699999999873
No 305
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.31 E-value=3 Score=39.92 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445677887 566699999999873
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.30 E-value=1.9 Score=37.68 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCchHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~ 153 (504)
+..++-+++++|+|||||+.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345677999999999999853
No 307
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=71.30 E-value=2.9 Score=40.13 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++.++||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345677877 666699999999873
No 308
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.26 E-value=2.2 Score=39.99 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHHH
Q 010672 139 LIGIAETGSGKTLAYL 154 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (504)
+++++|||||||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6788999999998644
No 309
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=71.24 E-value=2.7 Score=32.00 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=33.1
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 341 ~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
+.++.+++|+|.+-..+...+..|+..|+++..+.|++.
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 345678999999988999999999999998888888753
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.19 E-value=2.2 Score=38.77 Aligned_cols=16 Identities=31% Similarity=0.140 Sum_probs=13.4
Q ss_pred EEEEccCCCchHHHHH
Q 010672 139 LIGIAETGSGKTLAYL 154 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (504)
+++++|||||||+.+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6789999999998643
No 311
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=71.17 E-value=3 Score=40.05 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678887 566699999999873
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.14 E-value=1.5 Score=37.75 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.+.-+++++++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999984
No 313
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=71.07 E-value=2.8 Score=40.35 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.0
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678887 666699999999873
No 314
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=71.07 E-value=3 Score=40.10 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++-++||||||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 445667877 666699999999873
No 315
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.81 E-value=19 Score=37.84 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=56.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+|+..++.+.+.+.+.+ +.+..++++.+....... +. ...+|+||| +.+. ..+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~-~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLR-EGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCC-TTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhh-cCccCCCC
Confidence 5689999999999999999988864 677778877665444332 33 357899999 3332 35667889
Q ss_pred cEEEEcCcccc
Q 010672 248 TYLVLDEADRM 258 (504)
Q Consensus 248 ~~lV~DEah~~ 258 (504)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998887754
No 316
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.74 E-value=3 Score=39.15 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (504)
....+++.+++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999864
No 317
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.70 E-value=4.1 Score=40.69 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+++|+.+|+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999998654
No 318
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=70.65 E-value=2.2 Score=40.17 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=13.8
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++++|||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46788999999998643
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.63 E-value=2.7 Score=36.87 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.++-+++++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 345588899999999985
No 320
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.23 E-value=11 Score=38.95 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=30.3
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEecCC
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~SAT 286 (504)
+.+.+++++||.-.-+|......+.+.+..+..+. ++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45678999999999888877777888777765544 4444443
No 321
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.10 E-value=2.8 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.++-+.+++|+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999985
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.85 E-value=2.2 Score=36.49 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+..+++++++|||||+++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34679999999999998643
No 323
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=69.85 E-value=3.1 Score=40.39 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++-++||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445677877 666699999999874
No 324
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.79 E-value=2.3 Score=40.54 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~ 152 (504)
+..+..+++++|||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688899999999999973
No 325
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=69.62 E-value=3 Score=40.34 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.3
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~ 152 (504)
.+..++.|.+ +++-++||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445667877 66669999999987
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=69.52 E-value=2.2 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++.+++|||||+++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 327
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.38 E-value=6.6 Score=37.66 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+++.+|+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 328
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=69.25 E-value=3.4 Score=37.08 Aligned_cols=73 Identities=26% Similarity=0.326 Sum_probs=48.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc----cc---CCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA----AR---GLDVK 411 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~----~~---Gvdi~ 411 (504)
+.++||.++++.-+..+++.+++. ++.+..++++..... .......+..+|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999998888764 566666665432111 11122355778999993 22 12 47788
Q ss_pred CCCEEEEc
Q 010672 412 DVKYVINY 419 (504)
Q Consensus 412 ~v~~VI~~ 419 (504)
++.+||.-
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 88887753
No 329
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.21 E-value=9.8 Score=36.89 Aligned_cols=73 Identities=8% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---H-hcCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L-QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+....... + .....|+|+|. .+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA-RGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS-SSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh-CcCCcccC
Confidence 347999999999999999888875 3677888888765543322 2 23578999993 333 35677888
Q ss_pred cEEEEcC
Q 010672 248 TYLVLDE 254 (504)
Q Consensus 248 ~~lV~DE 254 (504)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 8888643
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.12 E-value=2.9 Score=36.29 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCchHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~ 153 (504)
..+.-+++++|+|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667889999999999853
No 331
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=68.90 E-value=3 Score=40.27 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++.++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778887 566699999999873
No 332
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=68.65 E-value=2.2 Score=35.69 Aligned_cols=17 Identities=12% Similarity=-0.218 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++.+++|||||+++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 333
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.65 E-value=2.3 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+++.+|+|+|||+.+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999753
No 334
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.57 E-value=3.6 Score=40.33 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 128 QGWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 128 ~~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
..+..++.|.+ +++.++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667788887 566699999999873
No 335
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.49 E-value=2.5 Score=40.94 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCCchHHH
Q 010672 134 LKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~ 152 (504)
..+..+++++|||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456689999999999975
No 336
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=68.47 E-value=21 Score=27.35 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCeEEEEeCC------cccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 010672 335 VKLLEDIMDGSRILIFMDT------KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~s------~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vL 398 (504)
.+.++......+++||..+ -..|..+.+.|.+.+++...+.=......++.+.+.......+.+
T Consensus 8 ~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 8 KDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred HHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3445555567799999984 778999999999999887776554555555555444333334444
No 337
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.20 E-value=3.5 Score=34.59 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
+..+++.+++|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456889999999999853
No 338
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=68.17 E-value=14 Score=35.54 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-c----c-ccCCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-V----A-ARGLDVKDV 413 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~----~-~~Gvdi~~v 413 (504)
..++||.|+++.-+..+++.++.. ++.+..++|+....+.... ..+..+|+|+|. . + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999998888877653 6788889998876543222 245788999993 2 2 233567778
Q ss_pred CEEEE
Q 010672 414 KYVIN 418 (504)
Q Consensus 414 ~~VI~ 418 (504)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 339
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.10 E-value=3.7 Score=40.68 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCchHHHH
Q 010672 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 130 i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
+..++.|.+ +++-++||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445678887 666699999999874
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.07 E-value=2.4 Score=35.85 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.5
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
-+++++++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3788899999999864
No 341
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=67.89 E-value=3.7 Score=39.72 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ +++-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666788887 566699999999873
No 342
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.86 E-value=1.1 Score=37.94 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=47.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccc
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~ 247 (504)
+.++||.|+++..+..+.+.+... ++.+..++|+.+....... +. ....|+|+| +.+.. ..++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDV 99 (170)
Confidence 456999999999998888887764 4667778887655443222 22 246789999 22222 4456667
Q ss_pred cEEEEcC
Q 010672 248 TYLVLDE 254 (504)
Q Consensus 248 ~~lV~DE 254 (504)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7666533
No 343
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=67.28 E-value=8.4 Score=32.66 Aligned_cols=17 Identities=24% Similarity=0.087 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++.+++|||||+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 344
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=67.24 E-value=3.4 Score=35.97 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.++-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 566788999999999985
No 345
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.22 E-value=3 Score=39.41 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++++|||||||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 346
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.04 E-value=5.4 Score=39.63 Aligned_cols=44 Identities=16% Similarity=0.020 Sum_probs=27.4
Q ss_pred HHHHHhc----CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 129 GWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 129 ~i~~~l~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
.++.++. |.-+++.|++|+|||..++-.+. ++..+ +..|+|++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~-~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK-NMSDN-------DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH-HHHHT-------TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH-HHHHc-------CCEEEEEEC
Confidence 3455543 34488889999999976554333 33321 456888765
No 347
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=67.03 E-value=3.2 Score=40.33 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.6
Q ss_pred HHHhcCCc--EEEEccCCCchHHHH
Q 010672 131 PMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 131 ~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
..++.|.+ +++-++||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567877 666699999999873
No 348
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.84 E-value=3.6 Score=35.63 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.|.-+.+.+|+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688899999999985
No 349
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=66.81 E-value=16 Score=35.91 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=50.6
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHH---Hh-cCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
+||.|+++.-+..+.+.+.+. ++.+..++|+......... +. ....|+|||. .+. ..+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~-rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS-RGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT-SSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh-CCCCcccCCEE
Confidence 999999999999999888875 4678889998766544332 22 3578999993 333 36677888888
Q ss_pred EE
Q 010672 251 VL 252 (504)
Q Consensus 251 V~ 252 (504)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 350
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.69 E-value=12 Score=36.07 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
..++++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998644
No 351
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.35 E-value=3 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchHHH
Q 010672 137 RDLIGIAETGSGKTLA 152 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (504)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 352
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=65.83 E-value=3.3 Score=38.60 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+.+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458888999999998643
No 353
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=65.83 E-value=3 Score=36.16 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (504)
.+.-+++.++.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999853
No 354
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=65.65 E-value=9.4 Score=38.01 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.4
Q ss_pred HhcCCcEEEEccCCCchHHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
+..|+.+++.++.|+|||..+.
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHH
Confidence 4578889999999999997643
No 355
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=65.46 E-value=5.9 Score=36.75 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCchHHHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l 155 (504)
..|.-+++.+++|+|||+.+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 3456688999999999976443
No 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=64.92 E-value=2.7 Score=35.43 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+..++++++.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4458889999999998643
No 357
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=64.88 E-value=28 Score=37.26 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=52.2
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHh----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----c------
Q 010672 342 MDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A------ 405 (504)
Q Consensus 342 ~~~~~~lIf~~s~~~~~~l~~~L~----~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~------ 405 (504)
..+..++|.|+|+.-|...++.+. ..|+.+.++.|+++..+|.... .++|+|+|. -+ .
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 345689999999998887766654 4589999999999987766543 368999994 22 1
Q ss_pred -cCCCCCCCCEEEE
Q 010672 406 -RGLDVKDVKYVIN 418 (504)
Q Consensus 406 -~Gvdi~~v~~VI~ 418 (504)
..+++..++++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 2366777887773
No 358
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.85 E-value=4.3 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.5
Q ss_pred CcEEEEccCCCchHHH
Q 010672 137 RDLIGIAETGSGKTLA 152 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~ 152 (504)
+-+.+.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3477899999999985
No 359
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=64.71 E-value=2.8 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.|.-+.+++|+|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345578899999999975
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=64.56 E-value=2.3 Score=36.21 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+..+++.+++|||||+++-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998644
No 361
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=64.44 E-value=4.5 Score=35.69 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.7
Q ss_pred hcCCcEEEEccCCCchHHH
Q 010672 134 LKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~ 152 (504)
..|+-+.+++|+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567789999999999974
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.44 E-value=3.7 Score=39.12 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.2
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++++|||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47888999999998654
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=64.18 E-value=9.4 Score=43.66 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=30.3
Q ss_pred cccccEEEEcCccccccCCcHHHHHHHHHhcCCCCceEEec
Q 010672 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (504)
Q Consensus 244 l~~~~~lV~DEah~~~~~~~~~~~~~il~~~~~~~~~i~~S 284 (504)
+++-+++|+||+=.-+|...+..+.+.+..+..++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999999888877777777777665555444444
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=64.09 E-value=7.3 Score=32.89 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=16.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHh
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
-+.+.++.|||||+. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367889999999975 333444443
No 365
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=64.08 E-value=9.6 Score=38.49 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchHHH
Q 010672 136 GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (504)
+.++++.++||||||.+
T Consensus 167 ~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG 183 (512)
T ss_dssp SCSEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999976
No 366
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.92 E-value=4.6 Score=35.21 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.2
Q ss_pred EEEEccCCCchHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLL 155 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (504)
.++.+++|||||+.+..
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 67889999999987544
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.91 E-value=6.6 Score=36.75 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCchHHH
Q 010672 136 GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (504)
+.-+.+.+|+|+|||+.
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34577889999999985
No 368
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=63.69 E-value=24 Score=27.15 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=42.8
Q ss_pred HHHHHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010672 335 VKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (504)
Q Consensus 335 ~~~l~~~~~~~~~lIf~~------s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLV 399 (504)
.+.++......+++||.. +-..|..+.+.|.+.+++...+.=..+.+.++.+.+.......+.++
T Consensus 6 ~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 6 NLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 344555556779999994 56678999999999998877765555565555554433333344443
No 369
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=63.63 E-value=13 Score=42.07 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=39.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHhcCC----CCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLLPAIVHVNAQP----FLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
..+|.|.-|||||.+-..-++..+.... ....-....+|+|+=|+.=|.++.+.+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999885555555554321 00111234699999999888888877765
No 370
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=63.47 E-value=33 Score=25.75 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=40.9
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010672 338 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (504)
Q Consensus 338 l~~~~~~~~~lIf~~------s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLV 399 (504)
+.+.....+++||.. .-..|..+...|.+.++....+.-+..+..+..+...+....++.++
T Consensus 10 ~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 10 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 333334567999984 45678999999998888877776666666666655555433444443
No 371
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=63.25 E-value=8.3 Score=38.56 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
..++++.+|+|+|||..+-. +...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 45799999999999987543 33343
No 372
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.14 E-value=5.2 Score=36.26 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=17.7
Q ss_pred hcCCcEEEEccCCCchHHHHH
Q 010672 134 LKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~ 154 (504)
+.++.+++.+++|||||+++-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348899999999999998643
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=63.02 E-value=3.3 Score=35.87 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
.-+++++++|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998643
No 374
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=62.75 E-value=8.4 Score=40.54 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
+.++||.||+++-++.+++.+.+. ++++..++|. ........+. ...+|+||| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 467999999999999998888775 4778888884 2222222332 357899999 44444 44555 6766
Q ss_pred E
Q 010672 251 V 251 (504)
Q Consensus 251 V 251 (504)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 375
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=62.66 E-value=72 Score=27.17 Aligned_cols=127 Identities=13% Similarity=-0.010 Sum_probs=51.5
Q ss_pred hcCCcEEEEccCCCchHHHHHHHHHHHHhcCC-----CCCCCCCCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEEC
Q 010672 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-----FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG 208 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 208 (504)
+.|-.+-+....|-|=|+.+.+|+...-.... ......+.++|||-........+...+...+.. .+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~---~v----- 89 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS---EV----- 89 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS---EE-----
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ee-----
Confidence 34456777788899999888888643322111 011223567999988888777777777665310 11
Q ss_pred CCCChHhHHHHhcCCcEEEeChHHHHHHHHcc--------CcccccccEEEEcCccccccCCcHHHHHHHHHh----cCC
Q 010672 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ----IRP 276 (504)
Q Consensus 209 g~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~--------~~~l~~~~~lV~DEah~~~~~~~~~~~~~il~~----~~~ 276 (504)
..+.+....+..+... ...-..+++||+|= .|.++. +..+...+.. ..+
T Consensus 90 ----------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~-G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 90 ----------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMD-GYEATREIRKVEKSYGV 150 (206)
T ss_dssp ----------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSC-HHHHHHHHHHHHHTTTC
T ss_pred ----------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCC-HHHHHHHHHhhhhhcCC
Confidence 1233444455554432 11123578899983 233443 3333333333 246
Q ss_pred CCceEEecCCC
Q 010672 277 DRQTLYWSATW 287 (504)
Q Consensus 277 ~~~~i~~SAT~ 287 (504)
...+|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 77899999975
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.65 E-value=4.1 Score=34.91 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.-+++.+++|||||+++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44568899999999998644
No 377
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.51 E-value=4.5 Score=33.73 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
+++++.++.|||||+++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999987543
No 378
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.45 E-value=9.5 Score=37.64 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=45.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH-hcCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
+.++||++|++.-++.+++.+.+. ++++..++|.. .......+ ....+|+||| +.+.. ..++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 346999999999999999999886 47788888763 22222233 3457999999 45544 34444 4444
No 379
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.40 E-value=3.5 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.3
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
-+++++|+|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678899999999853
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.39 E-value=3.8 Score=36.32 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.6
Q ss_pred HhcCCcEEEEccCCCchHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~ 152 (504)
+..|+-+++++|.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44566788999999999984
No 381
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=62.29 E-value=6.8 Score=29.93 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=32.8
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010672 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (504)
Q Consensus 340 ~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~ 379 (504)
.+..+.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3445678999999988899999999999995 778888753
No 382
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=62.21 E-value=3.5 Score=35.23 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
.-+++++++|||||+.+-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998643
No 383
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.11 E-value=19 Score=34.78 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=51.3
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc-cCCCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-----VAA-RGLDVKD 412 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-----~~~-~Gvdi~~ 412 (504)
...++||.++++.-+..+++.++.. +..+..++++...... .+.+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4468999999999998888887653 5677777887665433 4455667889999993 222 2355666
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=62.08 E-value=5.5 Score=32.76 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=12.6
Q ss_pred EEEEccCCCchHHH
Q 010672 139 LIGIAETGSGKTLA 152 (504)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (504)
.++.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999985
No 385
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.01 E-value=3.8 Score=35.94 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
.+++.+|+|+|||..+
T Consensus 60 ~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG 75 (212)
T ss_dssp EEEEESCGGGCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999764
No 386
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=61.99 E-value=16 Score=39.05 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=53.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh-------cCCCCceEEEEECCCCChHhHHHHh---------cCCcEEEeChHHHHH
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKF-------GASSKIKSTCIYGGVPKGPQVRDLQ---------KGVEIVIATPGRLID 235 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~-------~~~~~~~~~~~~gg~~~~~~~~~~~---------~~~~Iiv~T~~~l~~ 235 (504)
...+||.+|++.-+..+.+.+.+. ....++.+..++++.+...+...+. ....|+||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 567999999999999998888752 1235688899999987655543332 235799999 4
Q ss_pred HHHccCcccccccEEEE
Q 010672 236 MLESHNTNLRRVTYLVL 252 (504)
Q Consensus 236 ~l~~~~~~l~~~~~lV~ 252 (504)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 4443 556777887764
No 387
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.87 E-value=11 Score=46.01 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhcCCcEEEEccCCCchHHHHH
Q 010672 106 FPDYVMQEISKAGFFEPTPIQ-AQGW---PMALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 106 l~~~~~~~l~~~~~~~~~~~Q-~~~i---~~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
+.+.+.+.+.+.++. +.+.+ .+++ ..+...+.+++++|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566666677764 45544 3333 334456779999999999998754
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=61.84 E-value=5.2 Score=33.84 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=12.9
Q ss_pred cEEEEccCCCchHHH
Q 010672 138 DLIGIAETGSGKTLA 152 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (504)
-.++.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999985
No 389
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=61.81 E-value=9 Score=38.82 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccc----cC-C-CCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAA----RG-L-DVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~----~G-v-di~~ 412 (504)
..++||+|+++.-+..+.+.+++. ++.+..++|+.+...+...+. ...+|+|+| ..+. .+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888877777654 899999999986554432222 147799999 3332 22 3 4556
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 390
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.65 E-value=5.1 Score=34.92 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=15.9
Q ss_pred HHhcCCcEEEEccCCCchHHH
Q 010672 132 MALKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 132 ~~l~~~~~l~~a~TGsGKT~~ 152 (504)
.+..|+-+.+.+|+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456677788999999999984
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.63 E-value=11 Score=39.38 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=48.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHhcCCcEEEeChHHHHHHHHccCcccccccEEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~lV 251 (504)
+.++||.++++.-++++.+.+.+. ++.+..++|+.+.... ...+.+|+||| +.+..+ +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 567999999999999999888874 4788899998865432 23456899999 444443 3343 77666
No 392
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.56 E-value=4.3 Score=39.61 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.9
Q ss_pred EEEEccCCCchHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLL 155 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (504)
+++++|||+|||..+..
T Consensus 5 i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEECcchhhHHHHHHH
Confidence 67889999999976443
No 393
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=61.52 E-value=15 Score=39.57 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=46.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHhhC----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-cccc----cC-C-CCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAA----RG-L-DVKD 412 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~~----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~----~G-v-di~~ 412 (504)
..++||.|+++.-+..+.+.++.. ++.+..+||+.+...+...+. ...+|+|+| ..+. .+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999988887777654 899999999987655433222 257899999 3322 22 3 4556
Q ss_pred CCEEEE
Q 010672 413 VKYVIN 418 (504)
Q Consensus 413 v~~VI~ 418 (504)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 394
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.26 E-value=3.3 Score=35.37 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
.-+++.+++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999998654
No 395
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=61.08 E-value=7.7 Score=32.95 Aligned_cols=19 Identities=32% Similarity=0.170 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++++++|||||+.+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3458889999999998644
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.96 E-value=5.7 Score=33.82 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.9
Q ss_pred cEEEEccCCCchHHH
Q 010672 138 DLIGIAETGSGKTLA 152 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (504)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999985
No 397
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=60.87 E-value=21 Score=38.28 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHh----hCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc--
Q 010672 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-- 404 (504)
Q Consensus 332 ~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~----~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-- 404 (504)
..++-++.....+.+++|.|+|+.-|...++.+. ..++.+..+.|+++...|.... .++|+|+|. -+
T Consensus 103 af~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~f 176 (853)
T 2fsf_A 103 TATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGF 176 (853)
T ss_dssp HHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhH
Confidence 3344444333455689999999998877666654 4589999999999986655433 378999994 22
Q ss_pred ---ccC-------CCCCCCCEEEE
Q 010672 405 ---ARG-------LDVKDVKYVIN 418 (504)
Q Consensus 405 ---~~G-------vdi~~v~~VI~ 418 (504)
..+ ++...+.++|.
T Consensus 177 DyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 177 DYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp HHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred HHHHhhhhccHhHhcccCCcEEEE
Confidence 222 55667777773
No 398
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.65 E-value=3.6 Score=38.24 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++++|+|||||+.+-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999998643
No 399
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=60.55 E-value=5 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.6
Q ss_pred CCcEEEEccCCCchHHH
Q 010672 136 GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (504)
+.-+.+.+|+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34477889999999974
No 400
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=60.44 E-value=10 Score=35.25 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=46.8
Q ss_pred eEEEEeCCcccHHHHHHHHhhC-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----c-cCCCCCCC
Q 010672 346 RILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----A-RGLDVKDV 413 (504)
Q Consensus 346 ~~lIf~~s~~~~~~l~~~L~~~-----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~-~Gvdi~~v 413 (504)
++||.++++.-|..+++.++.. ++.+..++++...... .....+|||+|. .+ . ..+++.++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 7999999999999988777653 4667777776543221 134668999994 22 1 35778888
Q ss_pred CEEEEc
Q 010672 414 KYVINY 419 (504)
Q Consensus 414 ~~VI~~ 419 (504)
.+||.-
T Consensus 237 ~~lVlD 242 (300)
T 3fmo_B 237 KVFVLD 242 (300)
T ss_dssp SEEEET
T ss_pred eEEEEe
Confidence 888853
No 401
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=60.31 E-value=6 Score=31.55 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.8
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010672 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (504)
Q Consensus 341 ~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~ 379 (504)
+.++.+++|+|.+-..+...+..|++.|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 345678999999988899999999999985 888888864
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=60.19 E-value=5.7 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+.+++.+++|||||+++-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368899999999998644
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=60.15 E-value=4 Score=35.75 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.5
Q ss_pred cEEEEccCCCchHHHHHH
Q 010672 138 DLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~l 155 (504)
.+++.+++|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999986543
No 404
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=59.84 E-value=4.8 Score=34.83 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchHHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.-+.+.+++|||||+.+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568888999999998643
No 405
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=59.65 E-value=8.9 Score=30.93 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=33.7
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHhhCCC-CeEEecCCCC
Q 010672 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 379 (504)
Q Consensus 340 ~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~-~~~~ih~~~~ 379 (504)
.+.++.+++|+|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 344567899999998899999999999999 5888989864
No 406
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=59.61 E-value=15 Score=28.19 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=32.6
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 341 ~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
..++.+++|+|.+-..+...+..|+..|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 345678999999988899999999999986677888864
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.49 E-value=4 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++.++.|||||++.-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998643
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=59.48 E-value=6.5 Score=34.32 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchHHHHH
Q 010672 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 123 ~~~Q~~~i~~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
++.+.... .+..+.-+++++++|||||+.+-
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 44444442 23445668889999999998644
No 409
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=59.48 E-value=4.9 Score=41.63 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.9
Q ss_pred cEEEEccCCCchHHH
Q 010672 138 DLIGIAETGSGKTLA 152 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (504)
++|+.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 410
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.39 E-value=7.2 Score=33.57 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=25.0
Q ss_pred cccccEEEEcCccccc--cCCcHHHHHHHHHhcCCCCceEEecCCC
Q 010672 244 LRRVTYLVLDEADRML--DMGFEPQIKKILSQIRPDRQTLYWSATW 287 (504)
Q Consensus 244 l~~~~~lV~DEah~~~--~~~~~~~~~~il~~~~~~~~~i~~SAT~ 287 (504)
..+.+++|+||+..+- +..|...++.++.. ...+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4667899999987773 34455555555543 22345435554
No 411
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=59.37 E-value=2.8 Score=38.29 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998643
No 412
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=59.30 E-value=4.9 Score=37.40 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+|+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999998644
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=59.29 E-value=5.6 Score=35.43 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
...+++.+++|||||+++-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999986543
No 414
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=59.19 E-value=13 Score=37.96 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=24.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEccc
Q 010672 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt 181 (504)
.++++.+.||||||.+ +-.++..+.... .....+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl~~~---sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSILFKS---TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHHTTC---CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHHHhC---CCcceEEEEeCCC
Confidence 5799999999999976 444444444321 1123445555555
No 415
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.05 E-value=5.5 Score=37.79 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999853
No 416
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=58.95 E-value=21 Score=30.22 Aligned_cols=8 Identities=38% Similarity=0.381 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 010672 48 PRKLDLDG 55 (504)
Q Consensus 48 ~~~~~~~~ 55 (504)
+..|..+.
T Consensus 67 ~~~w~~d~ 74 (177)
T 2f3j_A 67 PDKWQHDL 74 (177)
T ss_dssp TTCSSCSS
T ss_pred cccccccc
Confidence 33465443
No 417
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=58.93 E-value=5.1 Score=33.99 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++++++|||||+++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.91 E-value=4.3 Score=35.55 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+++|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 419
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=58.81 E-value=48 Score=25.83 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHhhcCCCeEEEEeCC------cccHHHHHHHHhhCCCC---eEEecCCCCHHHHHHHHH
Q 010672 336 KLLEDIMDGSRILIFMDT------KKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLS 388 (504)
Q Consensus 336 ~~l~~~~~~~~~lIf~~s------~~~~~~l~~~L~~~~~~---~~~ih~~~~~~~r~~~~~ 388 (504)
+.++......+++||..+ --.|..+.+.|.+.+++ ...+.=....+.++.+.+
T Consensus 7 ~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 7 KAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp HHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 344445556789999984 67899999999998887 555554555555555444
No 420
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=58.61 E-value=6 Score=37.06 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.|+-+.+++|+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999974
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.53 E-value=6.7 Score=36.69 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.8
Q ss_pred CCcEEEEccCCCchHHH
Q 010672 136 GRDLIGIAETGSGKTLA 152 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~ 152 (504)
+.-+.+.+|+|+|||+.
T Consensus 100 g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 34477889999999985
No 422
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=58.43 E-value=4.6 Score=33.79 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
+.+++.+++|||||+++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998644
No 423
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=58.32 E-value=11 Score=37.29 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHHh-cCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
..++||.+|++.-++++.+.+.+. ++.+..+++.... .....+. ...+|+||| +.+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEE
Confidence 346999999999999999888775 4677777775432 2222222 357899999 44444 445656 666
Q ss_pred E
Q 010672 251 V 251 (504)
Q Consensus 251 V 251 (504)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 424
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.32 E-value=4.5 Score=34.43 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++.+++|||||+++-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999998644
No 425
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.22 E-value=4.5 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++++++|||||+++-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 426
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.15 E-value=5.9 Score=34.71 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.1
Q ss_pred EEEEccCCCchHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLL 155 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (504)
+++.+|+||||++.+..
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999987554
No 427
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.93 E-value=4.5 Score=35.82 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+++|||||+.+-
T Consensus 8 ~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 428
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=57.67 E-value=5.2 Score=35.26 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+++|||||+++-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998644
No 429
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=57.23 E-value=7 Score=37.53 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.2
Q ss_pred cCCc--EEEEccCCCchHHHH
Q 010672 135 KGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 135 ~~~~--~l~~a~TGsGKT~~~ 153 (504)
.|.+ +++-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 577799999999873
No 430
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.23 E-value=4.8 Score=34.78 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++++++|||||+++-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358889999999998644
No 431
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.19 E-value=54 Score=23.98 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=55.2
Q ss_pred ecChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc
Q 010672 324 IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (504)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~ 402 (504)
.+.+.+.+..-+..+.+...-.+++|..+.+....++-+.+.+.|+.+..+--+.+..+-++.-....+.-+.|--.|+
T Consensus 31 dvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 31 DVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp EECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred ecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 3444444444444454444456899999999999999999999999999998888877766655555555555554453
No 432
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=57.13 E-value=10 Score=35.72 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=13.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-+++.+++|+|||+...
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47778999999998644
No 433
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=57.05 E-value=66 Score=32.02 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=48.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhH---HHH-hcCCcEEEeChHHHHHHHHccCcccccccE
Q 010672 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (504)
Q Consensus 174 ~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~ 249 (504)
..++++....-+..+.+.+.+.+ .++..++|+.+..... ..+ ....+|+|||+..+.. .+++..+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 34444444666666777776643 3778888887654432 222 3456899999766533 567888999
Q ss_pred EEEcCcc
Q 010672 250 LVLDEAD 256 (504)
Q Consensus 250 lV~DEah 256 (504)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998877
No 434
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=56.94 E-value=61 Score=24.47 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=36.0
Q ss_pred CCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHH
Q 010672 343 DGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 390 (504)
Q Consensus 343 ~~~~~lIf~~------s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f 390 (504)
...+++||.. +-..|..+...|.+.++....+.=+.+...+....+..
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 4457989977 44579999999999999888887776666666555444
No 435
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=56.76 E-value=5.4 Score=35.07 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+++|||||+.+-
T Consensus 5 ~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998644
No 436
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=56.60 E-value=7.6 Score=36.56 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=12.4
Q ss_pred EEEEccCCCchHHH
Q 010672 139 LIGIAETGSGKTLA 152 (504)
Q Consensus 139 ~l~~a~TGsGKT~~ 152 (504)
+++.++.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67889999999974
No 437
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.50 E-value=5.8 Score=39.43 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHH-HH-HHHhcCCcEEEEccCCCchHHHHH
Q 010672 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQ-GW-PMALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 96 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~i-~~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
.|..+|+++.=.+.+.+.+...-. .|.+.. .+ ......+.+|+.+|+|+|||+.+-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 344678887655566555543200 000000 00 001223679999999999998643
No 438
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.17 E-value=5.3 Score=33.22 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=14.0
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+++|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 439
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=56.13 E-value=4.8 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
+..+++.++.|||||+++
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445788999999999864
No 440
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=56.12 E-value=13 Score=30.24 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=31.0
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHhhCCC-CeEEecCCCC
Q 010672 342 MDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 379 (504)
Q Consensus 342 ~~~~~~lIf~~s~~~~~~l~~~L~~~~~-~~~~ih~~~~ 379 (504)
.++.+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3456899999998888899999999999 5888989874
No 441
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=56.01 E-value=6.6 Score=34.71 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
+-+++.+|+||||++.+-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3477889999999987544
No 442
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=56.01 E-value=5.2 Score=34.57 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.6
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
-+++++++|||||+++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 443
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.78 E-value=26 Score=43.60 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=30.5
Q ss_pred CHHHHHHHHHcCCCCCcHHH-HHHHH---HHhcCCcEEEEccCCCchHHHHH
Q 010672 107 PDYVMQEISKAGFFEPTPIQ-AQGWP---MALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~Q-~~~i~---~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+.+.+.+.+.++ .+.+.+ .+++. .+.....+++++|||||||.++-
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 3455666667776 445544 33332 23345669999999999999854
No 444
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=55.60 E-value=12 Score=41.92 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----cccccCCC-C
Q 010672 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-----DVAARGLD-V 410 (504)
Q Consensus 337 ~l~~~~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-----~~~~~Gvd-i 410 (504)
++.....+.++||.++++.-+...++.+++....+..++|+.+ .++..+|+|+| +.+..+-. +
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 3333445679999999999999999999886558888999886 24678899999 34444432 5
Q ss_pred CCCCEEEE
Q 010672 411 KDVKYVIN 418 (504)
Q Consensus 411 ~~v~~VI~ 418 (504)
.++.+||.
T Consensus 289 ~~l~lVVI 296 (1108)
T 3l9o_A 289 REVAWVIF 296 (1108)
T ss_dssp HHEEEEEE
T ss_pred ccCCEEEE
Confidence 56677663
No 445
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=55.54 E-value=5.4 Score=34.61 Aligned_cols=15 Identities=33% Similarity=0.184 Sum_probs=12.8
Q ss_pred EEEEccCCCchHHHH
Q 010672 139 LIGIAETGSGKTLAY 153 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~ 153 (504)
+.+.++.|||||+++
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999864
No 446
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.49 E-value=77 Score=30.00 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=13.5
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
.+++++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999763
No 447
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=55.43 E-value=4.7 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++.++.|||||+.+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4457889999999998643
No 448
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.40 E-value=5.4 Score=34.32 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=13.8
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+++|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36788999999998643
No 449
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=55.10 E-value=6.8 Score=32.63 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCchHHH
Q 010672 135 KGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~ 152 (504)
.|.-+.+.+|.|+|||+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455578889999999973
No 450
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=55.05 E-value=3.7 Score=39.03 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
..++++.+|+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999998643
No 451
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=54.97 E-value=6.9 Score=34.41 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+.+.+++|||||+++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357888999999998643
No 452
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=54.85 E-value=5.5 Score=34.65 Aligned_cols=17 Identities=29% Similarity=-0.009 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
.-+.+.+|+|||||+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34678899999999853
No 453
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=54.84 E-value=5.2 Score=35.54 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=11.6
Q ss_pred hcCCcEEEEccCCCchHHH
Q 010672 134 LKGRDLIGIAETGSGKTLA 152 (504)
Q Consensus 134 l~~~~~l~~a~TGsGKT~~ 152 (504)
..|+-+.+.+|+|||||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466688899999999975
No 454
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=54.69 E-value=3.8 Score=35.69 Aligned_cols=19 Identities=32% Similarity=-0.025 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCchHHHH
Q 010672 135 KGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~~~ 153 (504)
.+.-+.+.+++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445778899999999853
No 455
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=54.68 E-value=20 Score=37.26 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=46.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCChHhHHHH-hcCCcEEEeChHHHHHHHHccCcccccccEE
Q 010672 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (504)
Q Consensus 172 ~~~vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Iiv~T~~~l~~~l~~~~~~l~~~~~l 250 (504)
..++||.++++.-++.+.+.+.+. ++.+..+++.. .......+ ....+|+||| +.+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaT-----dv~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTT-----DISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEEC-----cHHHc-CcccC-ceEE
Confidence 356999999999999999999886 36777788742 22222233 3457899999 44444 34453 6666
Q ss_pred E
Q 010672 251 V 251 (504)
Q Consensus 251 V 251 (504)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 456
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.47 E-value=5.7 Score=34.36 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.4
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
.+.+.+++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778899999999853
No 457
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=54.41 E-value=6.6 Score=34.06 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCeEEEEeCCcccHHH-HHHHHhh---CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 010672 344 GSRILIFMDTKKGCDQ-ITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~-l~~~L~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT 401 (504)
..++||+|+++..++. +.+.++. .++.+..++|+.....+...+. ...+|+|+|
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T 139 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIIST 139 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEE
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEEC
Confidence 4689999999988777 5555543 3678888888764332221111 146799999
No 458
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=54.30 E-value=7.1 Score=31.88 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=32.2
Q ss_pred cCCCeEEEEeCCc--ccHHHHHHHHhhCCCCeEEecCCCC
Q 010672 342 MDGSRILIFMDTK--KGCDQITRQLRMDGWPALSIHGDKS 379 (504)
Q Consensus 342 ~~~~~~lIf~~s~--~~~~~l~~~L~~~~~~~~~ih~~~~ 379 (504)
.++.+++|+|.+- ..+...+..|+..|+++..+.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3556899999987 5788999999999999888999854
No 459
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.21 E-value=5.7 Score=34.74 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=14.1
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+++.+++|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 460
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=54.13 E-value=11 Score=39.18 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.8
Q ss_pred HHhcCCcEEEEccCCCchHHHHH
Q 010672 132 MALKGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 132 ~~l~~~~~l~~a~TGsGKT~~~~ 154 (504)
.+..+..+++.+|+|+|||+.+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 35567899999999999998643
No 461
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=53.94 E-value=5.9 Score=33.72 Aligned_cols=16 Identities=31% Similarity=0.152 Sum_probs=13.5
Q ss_pred EEEEccCCCchHHHHH
Q 010672 139 LIGIAETGSGKTLAYL 154 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (504)
+++.++.|||||+++-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998644
No 462
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=53.77 E-value=28 Score=36.58 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=53.2
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEECCCCCh---HhHHHHh---cCCcEEEeChHHHHHHHHccCccccccc
Q 010672 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---PQVRDLQ---KGVEIVIATPGRLIDMLESHNTNLRRVT 248 (504)
Q Consensus 175 vlil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~~~---~~~~Iiv~T~~~l~~~l~~~~~~l~~~~ 248 (504)
.+|+++++.-+.++.+.+.+. ++.+..++|+.+.. .....+. ...+|+||| +.+.. .+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~e~-GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAIGM-GLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGGGS-SCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHHHC-CcCc-Ccc
Confidence 356688888888888888874 47888999998766 3344444 347899999 44444 5567 899
Q ss_pred EEEEcCcccc
Q 010672 249 YLVLDEADRM 258 (504)
Q Consensus 249 ~lV~DEah~~ 258 (504)
+||+-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888664
No 463
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=53.76 E-value=8.6 Score=36.91 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.3
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
-+.+++|+|+|||+..
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4778899999999853
No 464
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=53.52 E-value=6.5 Score=34.13 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++.++.|||||+++-
T Consensus 10 ~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp SCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4568899999999998644
No 465
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=53.44 E-value=16 Score=29.12 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010672 343 DGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (504)
Q Consensus 343 ~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~ 379 (504)
++.+++|+|.+=..+...+..|++.|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4568999999988888899999999995 788888874
No 466
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=52.94 E-value=6.3 Score=33.70 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=13.8
Q ss_pred EEEEccCCCchHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLL 155 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l 155 (504)
+++.++.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999987443
No 467
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=52.73 E-value=9.1 Score=37.83 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
..+++++++|+|||+.+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588899999999986443
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=52.49 E-value=8.4 Score=37.08 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.5
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
-.++++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999864
No 469
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=52.43 E-value=2.8 Score=44.33 Aligned_cols=70 Identities=11% Similarity=0.245 Sum_probs=46.8
Q ss_pred CeEEEEeCCcccHHHH-HHHHhhCC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-ccccc-----------CC
Q 010672 345 SRILIFMDTKKGCDQI-TRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAAR-----------GL 408 (504)
Q Consensus 345 ~~~lIf~~s~~~~~~l-~~~L~~~~---~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT-~~~~~-----------Gv 408 (504)
.++||.++++.-+..+ ++.|++.. +.+..++|+.+..++...+. +..+|+|+| ..+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 77776642 78999999886554333222 468899999 44432 24
Q ss_pred CCCCCCEEEE
Q 010672 409 DVKDVKYVIN 418 (504)
Q Consensus 409 di~~v~~VI~ 418 (504)
.+.++++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 5667787773
No 470
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=52.42 E-value=1e+02 Score=25.63 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcccc
Q 010672 326 SESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (504)
Q Consensus 326 ~~~~k~~~l~~~l~~~-~~~~~~lIf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~~~ 404 (504)
+..+-...+.+.+... ...+.+.|.|.+..++..+.+.|...|+++..+..+.. .-.-.|.|.|--.
T Consensus 42 ~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~ 109 (174)
T 3dmn_A 42 NFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFL 109 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccc
Confidence 4444455555555432 12356899999999999999999999998887765432 1134699999888
Q ss_pred ccCCCCCCCCEEEEcCC
Q 010672 405 ARGLDVKDVKYVINYDF 421 (504)
Q Consensus 405 ~~Gvdi~~v~~VI~~~~ 421 (504)
+.|+.+ ++||.+++
T Consensus 110 ~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 110 AKGLEF---DAVIVWNA 123 (174)
T ss_dssp CTTCCE---EEEEEETC
T ss_pred cCCcCC---CEEEEecC
Confidence 999976 56666554
No 471
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=52.41 E-value=23 Score=33.23 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=16.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhc
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNA 163 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~ 163 (504)
+.+.+|+|||||+.+ -++..+..
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHHT
T ss_pred EEEECCCCCCHHHHH--HHHHHHhc
Confidence 667799999999853 34444443
No 472
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.34 E-value=6 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCchHH
Q 010672 135 KGRDLIGIAETGSGKTL 151 (504)
Q Consensus 135 ~~~~~l~~a~TGsGKT~ 151 (504)
.|.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999997
No 473
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.32 E-value=8.2 Score=38.20 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
.+++++.+|+|+|||+.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999998643
No 474
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=52.29 E-value=4.8 Score=34.03 Aligned_cols=19 Identities=21% Similarity=-0.003 Sum_probs=11.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~ 154 (504)
+.-+++.++.|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458889999999998644
No 475
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.28 E-value=7.1 Score=33.92 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l 155 (504)
+.-++++++.|||||+++-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999987443
No 476
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=52.14 E-value=6.4 Score=35.80 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=14.2
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
-++++|++|||||+.+-
T Consensus 6 lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 47889999999998644
No 477
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=52.07 E-value=6.1 Score=39.62 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchHHHH
Q 010672 137 RDLIGIAETGSGKTLAY 153 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~ 153 (504)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999864
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.05 E-value=16 Score=42.53 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~ 182 (504)
++.+++.+++|+|||..++-.++..+.. +.+++|+.-..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te~ 72 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEH 72 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEecC
Confidence 5689999999999998755544444432 44577776543
No 479
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=52.01 E-value=33 Score=26.77 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCC-eEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010672 338 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (504)
Q Consensus 338 l~~~~~~~~~lIf~~------s~~~~~~l~~~L~~~~~~-~~~ih~~~~~~~r~~~~~~f~~g~~~vLV 399 (504)
+++.....+++||.. .-..|..+.+.|.+.+++ ...+.=+.+.+.++.+.+.......+.++
T Consensus 13 v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vf 81 (118)
T 2wem_A 13 LDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY 81 (118)
T ss_dssp HHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHhccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEE
Confidence 333334468999998 477899999999999985 77666555666665544433233344443
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.74 E-value=6.7 Score=34.67 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.6
Q ss_pred EEEEccCCCchHHHHH
Q 010672 139 LIGIAETGSGKTLAYL 154 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~ 154 (504)
+++.+++|||||+.+-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6888999999998644
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=51.56 E-value=9.9 Score=33.05 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=12.9
Q ss_pred cEEEEccCCCchHHH
Q 010672 138 DLIGIAETGSGKTLA 152 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (504)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 367889999999985
No 482
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=51.46 E-value=36 Score=31.47 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=49.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHhh----CCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcc-cc-----ccCCCCCCC
Q 010672 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VA-----ARGLDVKDV 413 (504)
Q Consensus 344 ~~~~lIf~~s~~~~~~l~~~L~~----~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLVaT~-~~-----~~Gvdi~~v 413 (504)
..++||.++++.-+..+++.+++ .+..+..++|+.+..+.... +. ..+|+|+|. .+ ..-+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 56899999999999998888874 35788899999887654332 33 378999993 22 123456667
Q ss_pred CEEEE
Q 010672 414 KYVIN 418 (504)
Q Consensus 414 ~~VI~ 418 (504)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 483
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=51.44 E-value=10 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCchHHHH
Q 010672 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (504)
Q Consensus 129 ~i~~~l~~~~--~l~~a~TGsGKT~~~ 153 (504)
.+..++.|.+ ++.-++||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788887 555599999999873
No 484
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=51.25 E-value=9.7 Score=38.43 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~ 192 (504)
|.-+++.|++|+|||..++- ++.++..+ .+..|++++-- +-..|+...+
T Consensus 242 G~l~li~G~pG~GKT~lal~-~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQ-QALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHH-HHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHH-HHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 34588889999999976444 33333321 13457777642 2233444443
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.20 E-value=16 Score=39.02 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=18.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHH
Q 010672 136 GRDLIGIAETGSGKTLAYLLPAIVHV 161 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~~l~~l~~l 161 (504)
..++|+.+|+|+|||.++-. +...+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~-la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 45799999999999987543 33343
No 486
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=51.07 E-value=5.6 Score=33.66 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=13.1
Q ss_pred cEEEEccCCCchHHHH
Q 010672 138 DLIGIAETGSGKTLAY 153 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~ 153 (504)
-+.+++++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999854
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=50.83 E-value=8.9 Score=32.74 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=23.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~Pt~~L~~q~~~~~~~ 194 (504)
+++.+++|||||.-+.- +... +..+++++.....-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~-------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD-------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS-------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc-------CCCeEEEecCCCCCHHHHHHHHH
Confidence 68899999999964332 1111 22378888754433334443433
No 488
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=50.69 E-value=35 Score=27.36 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=40.8
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHhhCCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 010672 338 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (504)
Q Consensus 338 l~~~~~~~~~lIf~~------s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vLV 399 (504)
+.+.....+++||+. .-..|..+.+.|.+.+++...+.=..+.+.++.+.+.......++|+
T Consensus 28 v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 28 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 333333457999987 45679999999999998888776666666666655444333344443
No 489
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=50.65 E-value=37 Score=32.96 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHh---cCCcEEEEccCCCchHHHHH
Q 010672 123 TPIQAQGWPMAL---KGRDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 123 ~~~Q~~~i~~~l---~~~~~l~~a~TGsGKT~~~~ 154 (504)
-..-..+|+.++ .|+.+.+.+|+|+|||....
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 344456666654 58899999999999998643
No 490
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.15 E-value=9.7 Score=36.71 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=0.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHh
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
.++.++||+|||. ++-++..+.
T Consensus 28 ~vi~G~NGaGKT~--ileAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSS--IFEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHH--HHHHHHHHH
No 491
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.14 E-value=9.3 Score=32.76 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.7
Q ss_pred cEEEEccCCCchHHHHH
Q 010672 138 DLIGIAETGSGKTLAYL 154 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~~~ 154 (504)
.+.+.+++|||||+++-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37788999999998643
No 492
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=50.06 E-value=9.9 Score=33.29 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYL 154 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~ 154 (504)
..+++.+++|||||+++-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999998644
No 493
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.02 E-value=17 Score=30.68 Aligned_cols=15 Identities=40% Similarity=0.240 Sum_probs=12.8
Q ss_pred cEEEEccCCCchHHH
Q 010672 138 DLIGIAETGSGKTLA 152 (504)
Q Consensus 138 ~~l~~a~TGsGKT~~ 152 (504)
-++++++.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 477889999999974
No 494
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=49.92 E-value=19 Score=39.74 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=39.2
Q ss_pred cCCcccCC-C-CHHHHHHHHHcCCCCCcH----HHHHHHHHHhc---CCcEEEEccCCCchHHHHHHHHHHHHh
Q 010672 98 VKSFRDVG-F-PDYVMQEISKAGFFEPTP----IQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (504)
Q Consensus 98 ~~~f~~~~-l-~~~~~~~l~~~~~~~~~~----~Q~~~i~~~l~---~~~~l~~a~TGsGKT~~~~l~~l~~l~ 162 (504)
+..|..++ + .+..++.........+-| +=..|...++. .+.+|+.+++|+|||.+.-. +++++.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 44455553 3 677777776554444333 34445544442 34599999999999988544 555554
No 495
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=49.66 E-value=9.4 Score=34.25 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHHH
Q 010672 137 RDLIGIAETGSGKTLAYLL 155 (504)
Q Consensus 137 ~~~l~~a~TGsGKT~~~~l 155 (504)
..+++.++.|||||+++-.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3588899999999986543
No 496
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.44 E-value=16 Score=34.38 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=21.3
Q ss_pred EEEEccCCCchHHHHHHHHHHHHhcCCCCCCCCCCEEEEEcc
Q 010672 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~vlil~P 180 (504)
++..+..|.|||+++..-+...... +.+||++-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--------GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEEeC
Confidence 5566999999998866544333222 455666654
No 497
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.18 E-value=9.6 Score=34.14 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchHHHH
Q 010672 136 GRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 136 ~~~~l~~a~TGsGKT~~~ 153 (504)
...++++++.|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356889999999999853
No 498
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=48.96 E-value=12 Score=30.03 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=32.3
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHhhCCCC-eEEecCCCC
Q 010672 342 MDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (504)
Q Consensus 342 ~~~~~~lIf~~s~~~~~~l~~~L~~~~~~-~~~ih~~~~ 379 (504)
..+.+++|||.+-..+..++..|+..|+. +..+.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 35678999999988888999999999995 888988854
No 499
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.79 E-value=7.3 Score=34.91 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCchHHHH
Q 010672 133 ALKGRDLIGIAETGSGKTLAY 153 (504)
Q Consensus 133 ~l~~~~~l~~a~TGsGKT~~~ 153 (504)
+..|.-+.+.+|.|||||+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
No 500
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=48.79 E-value=5.6 Score=36.00 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=0.0
Q ss_pred EEEEccCCCchHHHH
Q 010672 139 LIGIAETGSGKTLAY 153 (504)
Q Consensus 139 ~l~~a~TGsGKT~~~ 153 (504)
+++++++|||||+.+
T Consensus 35 i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEESCGGGTTHHHH
T ss_pred EEEECCCCCCHHHHH
Done!