Query 010673
Match_columns 504
No_of_seqs 529 out of 3479
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 9.3E-93 2E-97 708.2 35.1 480 1-499 139-624 (625)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.9E-30 8.5E-35 226.0 17.2 168 281-453 6-175 (205)
3 PRK11058 GTPase HflX; Provisio 100.0 4.3E-29 9.4E-34 255.9 15.1 294 126-450 55-362 (426)
4 COG2262 HflX GTPases [General 100.0 9.6E-29 2.1E-33 241.5 16.5 294 126-451 50-357 (411)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.1E-28 1.3E-32 211.1 17.9 168 281-453 19-188 (221)
6 KOG0092 GTPase Rab5/YPT51 and 100.0 4E-28 8.7E-33 212.6 16.3 166 282-453 3-170 (200)
7 KOG0078 GTP-binding protein SE 100.0 7.7E-28 1.7E-32 215.0 18.0 167 280-452 8-176 (207)
8 TIGR03156 GTP_HflX GTP-binding 100.0 2.4E-28 5.2E-33 245.0 15.1 290 126-448 47-350 (351)
9 KOG0394 Ras-related GTPase [Ge 100.0 1.5E-27 3.2E-32 206.7 15.0 171 281-453 6-181 (210)
10 KOG0080 GTPase Rab18, small G 100.0 2E-27 4.3E-32 200.7 15.3 165 282-451 9-175 (209)
11 KOG0079 GTP-binding protein H- 100.0 9.7E-28 2.1E-32 199.7 13.2 164 283-453 7-172 (198)
12 cd04121 Rab40 Rab40 subfamily. 99.9 1.5E-26 3.2E-31 213.1 20.8 169 282-457 4-174 (189)
13 KOG0098 GTPase Rab2, small G p 99.9 4.8E-27 1E-31 203.8 16.1 163 282-450 4-168 (216)
14 cd04133 Rop_like Rop subfamily 99.9 1.5E-26 3.3E-31 210.6 18.4 161 285-452 2-175 (176)
15 cd04120 Rab12 Rab12 subfamily. 99.9 3.4E-26 7.4E-31 212.7 19.2 161 285-451 1-164 (202)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-25 2.4E-30 206.3 18.9 162 282-450 3-180 (182)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.6E-25 3.5E-30 211.7 20.2 163 283-452 12-190 (232)
18 cd04131 Rnd Rnd subfamily. Th 99.9 2.1E-25 4.5E-30 203.9 18.7 159 285-450 2-176 (178)
19 cd04122 Rab14 Rab14 subfamily. 99.9 3.2E-25 7E-30 200.5 19.8 161 284-450 2-164 (166)
20 cd01892 Miro2 Miro2 subfamily. 99.9 1.8E-25 4E-30 202.8 18.0 166 281-453 1-169 (169)
21 KOG0087 GTPase Rab11/YPT3, sma 99.9 1E-25 2.2E-30 200.3 15.3 164 280-449 10-175 (222)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 3.9E-25 8.4E-30 201.2 19.5 162 284-451 2-165 (172)
23 cd01875 RhoG RhoG subfamily. 99.9 4.5E-25 9.7E-30 204.3 19.2 163 284-453 3-180 (191)
24 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 6.1E-25 1.3E-29 205.2 19.2 166 285-452 1-170 (201)
25 cd04128 Spg1 Spg1p. Spg1p (se 99.9 7.5E-25 1.6E-29 201.1 19.3 166 285-457 1-173 (182)
26 cd04109 Rab28 Rab28 subfamily. 99.9 1.1E-24 2.4E-29 205.6 20.8 166 285-453 1-169 (215)
27 cd01867 Rab8_Rab10_Rab13_like 99.9 1.3E-24 2.8E-29 196.8 19.8 161 284-450 3-165 (167)
28 KOG0095 GTPase Rab30, small G 99.9 3.4E-25 7.4E-30 184.7 14.3 162 283-450 6-169 (213)
29 KOG0093 GTPase Rab3, small G p 99.9 4.2E-25 9.1E-30 183.8 14.3 164 282-451 19-184 (193)
30 cd01865 Rab3 Rab3 subfamily. 99.9 1.9E-24 4.2E-29 195.3 20.0 160 285-450 2-163 (165)
31 cd04117 Rab15 Rab15 subfamily. 99.9 1.4E-24 3E-29 195.4 18.8 158 285-448 1-160 (161)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.1E-24 4.6E-29 195.1 19.7 161 284-450 2-164 (166)
33 cd04127 Rab27A Rab27a subfamil 99.9 2.4E-24 5.2E-29 197.4 20.1 163 283-450 3-177 (180)
34 cd04136 Rap_like Rap-like subf 99.9 1.7E-24 3.8E-29 194.7 18.1 159 285-449 2-162 (163)
35 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.6E-24 3.5E-29 197.7 18.0 158 285-449 2-174 (175)
36 cd04119 RJL RJL (RabJ-Like) su 99.9 3.5E-24 7.6E-29 193.5 19.5 163 285-450 1-167 (168)
37 cd04110 Rab35 Rab35 subfamily. 99.9 4.3E-24 9.4E-29 199.1 20.6 164 282-452 4-169 (199)
38 cd04175 Rap1 Rap1 subgroup. T 99.9 2.8E-24 6.2E-29 193.8 18.4 159 285-449 2-162 (164)
39 PLN03071 GTP-binding nuclear p 99.9 3.2E-24 6.8E-29 202.7 19.0 162 282-451 11-173 (219)
40 cd04116 Rab9 Rab9 subfamily. 99.9 6.4E-24 1.4E-28 192.7 20.4 165 282-448 3-169 (170)
41 cd00877 Ran Ran (Ras-related n 99.9 3.3E-24 7.1E-29 194.0 18.3 159 285-451 1-160 (166)
42 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5.2E-24 1.1E-28 193.4 19.7 160 286-450 2-165 (170)
43 cd01864 Rab19 Rab19 subfamily. 99.9 5.8E-24 1.3E-28 192.0 19.7 160 284-448 3-164 (165)
44 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.3E-24 1.1E-28 191.1 19.2 159 285-449 2-161 (162)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6.3E-24 1.4E-28 199.8 20.2 162 285-453 2-179 (222)
46 cd01868 Rab11_like Rab11-like. 99.9 8.3E-24 1.8E-28 190.9 19.8 160 284-449 3-164 (165)
47 cd01866 Rab2 Rab2 subfamily. 99.9 8.9E-24 1.9E-28 191.5 20.0 162 283-450 3-166 (168)
48 cd04144 Ras2 Ras2 subfamily. 99.9 4.5E-24 9.8E-29 197.5 18.3 163 286-452 1-165 (190)
49 cd04106 Rab23_lke Rab23-like s 99.9 7.4E-24 1.6E-28 190.5 19.0 157 285-448 1-161 (162)
50 cd01871 Rac1_like Rac1-like su 99.9 6E-24 1.3E-28 193.7 18.4 157 285-448 2-173 (174)
51 cd04125 RabA_like RabA-like su 99.9 8.7E-24 1.9E-28 195.3 19.7 162 285-452 1-164 (188)
52 cd04124 RabL2 RabL2 subfamily. 99.9 8.9E-24 1.9E-28 190.2 19.2 159 285-452 1-160 (161)
53 cd04111 Rab39 Rab39 subfamily. 99.9 1.1E-23 2.3E-28 198.0 20.0 163 284-451 2-167 (211)
54 PTZ00369 Ras-like protein; Pro 99.9 8E-24 1.7E-28 195.7 18.8 163 283-451 4-168 (189)
55 cd04112 Rab26 Rab26 subfamily. 99.9 1.1E-23 2.4E-28 195.1 19.7 167 285-457 1-170 (191)
56 cd04140 ARHI_like ARHI subfami 99.9 1.1E-23 2.3E-28 190.4 18.8 160 285-448 2-163 (165)
57 PF00071 Ras: Ras family; Int 99.9 7.2E-24 1.6E-28 190.6 17.4 159 286-450 1-161 (162)
58 cd04134 Rho3 Rho3 subfamily. 99.9 1E-23 2.2E-28 194.9 18.8 162 286-454 2-178 (189)
59 cd04142 RRP22 RRP22 subfamily. 99.9 8.4E-24 1.8E-28 196.6 17.8 168 285-453 1-177 (198)
60 smart00173 RAS Ras subfamily o 99.9 1.3E-23 2.8E-28 189.4 18.3 160 285-450 1-162 (164)
61 cd04176 Rap2 Rap2 subgroup. T 99.9 1.1E-23 2.4E-28 189.7 17.8 159 285-449 2-162 (163)
62 cd04143 Rhes_like Rhes_like su 99.9 5.4E-24 1.2E-28 204.1 16.0 180 285-468 1-189 (247)
63 cd04113 Rab4 Rab4 subfamily. 99.9 2.1E-23 4.5E-28 187.5 18.6 158 285-448 1-160 (161)
64 KOG0091 GTPase Rab39, small G 99.9 5.4E-24 1.2E-28 180.4 13.5 162 283-449 7-172 (213)
65 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.7E-23 5.8E-28 187.2 19.1 160 284-449 2-163 (164)
66 PLN03110 Rab GTPase; Provision 99.9 3.2E-23 7E-28 195.5 19.9 164 282-451 10-175 (216)
67 cd04101 RabL4 RabL4 (Rab-like4 99.9 4E-23 8.7E-28 186.2 19.7 158 285-449 1-163 (164)
68 KOG0086 GTPase Rab4, small G p 99.9 1.1E-23 2.4E-28 176.4 14.3 163 282-450 7-171 (214)
69 cd04132 Rho4_like Rho4-like su 99.9 3.4E-23 7.4E-28 191.1 19.2 162 285-453 1-170 (187)
70 smart00176 RAN Ran (Ras-relate 99.9 2.9E-23 6.3E-28 192.7 18.3 154 290-451 1-155 (200)
71 smart00174 RHO Rho (Ras homolo 99.9 2.2E-23 4.7E-28 189.9 16.9 158 287-451 1-173 (174)
72 cd04115 Rab33B_Rab33A Rab33B/R 99.9 6.4E-23 1.4E-27 186.3 19.8 161 284-449 2-168 (170)
73 cd01861 Rab6 Rab6 subfamily. 99.9 5.4E-23 1.2E-27 184.7 18.8 158 285-448 1-160 (161)
74 smart00175 RAB Rab subfamily o 99.9 7.2E-23 1.6E-27 184.3 19.2 160 285-450 1-162 (164)
75 cd04118 Rab24 Rab24 subfamily. 99.9 7.2E-23 1.6E-27 189.9 19.3 160 285-451 1-167 (193)
76 cd01863 Rab18 Rab18 subfamily. 99.9 1E-22 2.2E-27 182.9 19.3 159 285-448 1-160 (161)
77 cd04126 Rab20 Rab20 subfamily. 99.9 7.5E-23 1.6E-27 192.4 18.9 156 285-450 1-190 (220)
78 cd01860 Rab5_related Rab5-rela 99.9 1.3E-22 2.7E-27 182.7 19.6 159 285-449 2-162 (163)
79 PLN03108 Rab family protein; P 99.9 1.3E-22 2.7E-27 190.7 20.0 163 283-451 5-169 (210)
80 KOG0088 GTPase Rab21, small G 99.9 7.8E-24 1.7E-28 178.4 10.4 164 282-451 11-176 (218)
81 cd04148 RGK RGK subfamily. Th 99.9 9.2E-23 2E-27 193.0 19.1 162 285-453 1-166 (221)
82 cd01873 RhoBTB RhoBTB subfamil 99.9 7.8E-23 1.7E-27 189.4 17.9 156 284-448 2-194 (195)
83 cd04103 Centaurin_gamma Centau 99.9 7.4E-23 1.6E-27 183.4 17.1 152 285-448 1-157 (158)
84 cd01862 Rab7 Rab7 subfamily. 99.9 2.3E-22 4.9E-27 182.6 19.5 166 285-452 1-169 (172)
85 cd04177 RSR1 RSR1 subgroup. R 99.9 3.2E-22 6.9E-27 181.3 18.5 161 285-450 2-164 (168)
86 cd04123 Rab21 Rab21 subfamily. 99.9 4.6E-22 9.9E-27 178.5 19.3 159 285-449 1-161 (162)
87 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.5E-22 5.5E-27 182.9 17.4 156 285-447 1-171 (173)
88 cd04135 Tc10 TC10 subfamily. 99.9 2.7E-22 5.8E-27 182.7 17.4 158 285-449 1-173 (174)
89 PLN03118 Rab family protein; P 99.9 4.2E-22 9.1E-27 187.5 19.3 166 282-453 12-180 (211)
90 cd04146 RERG_RasL11_like RERG/ 99.9 1.8E-22 3.8E-27 182.4 15.4 160 286-450 1-164 (165)
91 KOG0395 Ras-related GTPase [Ge 99.9 4.4E-22 9.5E-27 183.4 16.2 167 283-455 2-170 (196)
92 cd04139 RalA_RalB RalA/RalB su 99.9 1.6E-21 3.5E-26 175.4 18.9 160 285-450 1-162 (164)
93 cd01870 RhoA_like RhoA-like su 99.9 1.2E-21 2.7E-26 178.5 18.1 158 285-449 2-174 (175)
94 KOG0083 GTPase Rab26/Rab37, sm 99.9 3.2E-23 7E-28 169.7 6.7 163 289-457 2-167 (192)
95 KOG0081 GTPase Rab27, small G 99.9 3.7E-23 8E-28 174.4 6.8 162 284-450 9-181 (219)
96 cd04114 Rab30 Rab30 subfamily. 99.9 3.3E-21 7.2E-26 174.5 19.7 161 283-449 6-168 (169)
97 cd00154 Rab Rab family. Rab G 99.9 3.6E-21 7.8E-26 171.5 18.4 156 285-446 1-158 (159)
98 PLN00223 ADP-ribosylation fact 99.9 5.9E-21 1.3E-25 175.1 18.7 157 282-451 15-179 (181)
99 cd01893 Miro1 Miro1 subfamily. 99.9 6.1E-21 1.3E-25 172.5 18.6 159 285-451 1-165 (166)
100 smart00177 ARF ARF-like small 99.9 6.1E-21 1.3E-25 174.1 18.7 156 282-450 11-174 (175)
101 cd04129 Rho2 Rho2 subfamily. 99.9 6.1E-21 1.3E-25 176.1 18.4 164 285-455 2-178 (187)
102 cd04149 Arf6 Arf6 subfamily. 99.9 4.8E-21 1E-25 173.6 17.1 156 282-447 7-167 (168)
103 cd04147 Ras_dva Ras-dva subfam 99.9 6.3E-21 1.4E-25 177.6 18.0 166 286-457 1-170 (198)
104 cd04137 RheB Rheb (Ras Homolog 99.9 1.1E-20 2.3E-25 173.2 19.2 163 285-453 2-166 (180)
105 cd00876 Ras Ras family. The R 99.9 8.4E-21 1.8E-25 169.8 18.0 157 286-448 1-159 (160)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.8E-21 1E-25 172.0 16.2 153 285-447 1-158 (159)
107 cd00157 Rho Rho (Ras homology) 99.9 7.4E-21 1.6E-25 172.4 16.5 156 285-447 1-170 (171)
108 PTZ00133 ADP-ribosylation fact 99.9 2.1E-20 4.5E-25 171.6 18.8 156 282-450 15-178 (182)
109 cd04158 ARD1 ARD1 subfamily. 99.9 1.2E-20 2.5E-25 171.3 16.9 155 286-450 1-161 (169)
110 cd04154 Arl2 Arl2 subfamily. 99.9 1.5E-20 3.3E-25 171.2 16.8 156 281-447 11-172 (173)
111 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.5E-20 3.2E-25 174.5 16.9 148 285-435 1-174 (202)
112 PTZ00132 GTP-binding nuclear p 99.9 4.3E-20 9.4E-25 174.3 20.1 166 281-454 6-173 (215)
113 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.5E-20 5.4E-25 171.3 17.6 162 284-451 3-171 (183)
114 KOG0097 GTPase Rab14, small G 99.9 1.4E-20 3.1E-25 155.7 14.2 162 282-449 9-172 (215)
115 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 5.2E-21 1.1E-25 172.7 12.7 151 286-447 1-163 (164)
116 COG5126 FRQ1 Ca2+-binding prot 99.9 3.3E-21 7.1E-26 167.6 10.4 146 47-207 10-158 (160)
117 cd04157 Arl6 Arl6 subfamily. 99.8 4.2E-20 9E-25 166.0 17.7 155 286-447 1-161 (162)
118 KOG0393 Ras-related small GTPa 99.8 7.5E-21 1.6E-25 171.2 11.8 165 283-454 3-183 (198)
119 KOG4252 GTP-binding protein [S 99.8 9.8E-22 2.1E-26 169.2 5.1 161 282-449 18-180 (246)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5.3E-20 1.1E-24 167.8 16.4 155 283-447 14-173 (174)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.8 7.4E-20 1.6E-24 164.1 15.4 153 286-447 1-159 (160)
122 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.4E-19 3.1E-24 186.8 19.4 209 219-451 134-361 (442)
123 TIGR00436 era GTP-binding prot 99.8 1.6E-19 3.5E-24 176.2 18.7 179 286-475 2-190 (270)
124 KOG0027 Calmodulin and related 99.8 1.3E-20 2.8E-25 167.4 9.9 142 50-205 1-149 (151)
125 COG0486 ThdF Predicted GTPase 99.8 1.8E-19 4E-24 179.8 18.8 213 218-452 143-378 (454)
126 cd01878 HflX HflX subfamily. 99.8 3.3E-19 7.1E-24 166.9 19.2 159 279-448 36-203 (204)
127 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.2E-19 2.6E-24 164.2 15.1 153 286-447 1-166 (167)
128 PLN00023 GTP-binding protein; 99.8 1.8E-19 4E-24 175.0 17.0 146 279-426 16-190 (334)
129 smart00178 SAR Sar1p-like memb 99.8 4.6E-19 1E-23 163.0 18.6 154 282-448 15-183 (184)
130 PRK05291 trmE tRNA modificatio 99.8 2.8E-19 6E-24 185.8 18.7 185 247-451 164-371 (449)
131 cd04151 Arl1 Arl1 subfamily. 99.8 6.1E-19 1.3E-23 158.0 18.0 152 286-447 1-157 (158)
132 cd00879 Sar1 Sar1 subfamily. 99.8 6.8E-19 1.5E-23 162.7 18.3 157 282-448 17-189 (190)
133 cd00878 Arf_Arl Arf (ADP-ribos 99.8 7.5E-19 1.6E-23 157.3 16.8 151 286-447 1-157 (158)
134 TIGR02528 EutP ethanolamine ut 99.8 2.8E-19 6.2E-24 157.1 13.3 134 286-446 2-141 (142)
135 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.2E-19 1.3E-23 159.3 15.4 153 286-447 1-166 (167)
136 KOG0028 Ca2+-binding protein ( 99.8 1.7E-19 3.6E-24 152.7 10.4 150 43-206 19-171 (172)
137 cd01898 Obg Obg subfamily. Th 99.8 1.1E-18 2.4E-23 158.0 16.6 159 286-448 2-169 (170)
138 cd01897 NOG NOG1 is a nucleola 99.8 1.8E-18 3.9E-23 156.4 17.7 156 285-449 1-167 (168)
139 cd01890 LepA LepA subfamily. 99.8 1.8E-18 3.8E-23 158.2 17.7 154 286-449 2-176 (179)
140 cd04159 Arl10_like Arl10-like 99.8 1.6E-18 3.5E-23 154.4 16.6 152 287-447 2-158 (159)
141 COG1159 Era GTPase [General fu 99.8 2.1E-18 4.6E-23 163.0 16.8 186 284-479 6-202 (298)
142 PRK12299 obgE GTPase CgtA; Rev 99.8 3.7E-18 8E-23 170.1 18.6 167 281-451 155-329 (335)
143 cd04155 Arl3 Arl3 subfamily. 99.8 5.6E-18 1.2E-22 154.0 18.2 153 282-447 12-172 (173)
144 PF02421 FeoB_N: Ferrous iron 99.8 1.2E-18 2.5E-23 153.3 12.0 149 285-445 1-156 (156)
145 PF08356 EF_assoc_2: EF hand a 99.8 5.4E-19 1.2E-23 137.6 8.4 86 89-175 2-88 (89)
146 KOG0073 GTP-binding ADP-ribosy 99.8 1.2E-17 2.6E-22 142.5 16.1 160 282-451 14-179 (185)
147 PRK15494 era GTPase Era; Provi 99.8 1.8E-17 3.9E-22 166.3 19.6 186 282-480 50-247 (339)
148 PF00025 Arf: ADP-ribosylation 99.8 2.2E-17 4.8E-22 150.5 17.9 159 281-449 11-175 (175)
149 TIGR02729 Obg_CgtA Obg family 99.8 1.5E-17 3.2E-22 165.7 17.8 165 281-449 154-328 (329)
150 PTZ00099 rab6; Provisional 99.8 2.1E-17 4.6E-22 150.5 17.1 140 307-452 3-144 (176)
151 cd04171 SelB SelB subfamily. 99.8 2.4E-17 5.2E-22 148.1 17.1 152 286-447 2-163 (164)
152 PRK00089 era GTPase Era; Revie 99.8 4E-17 8.6E-22 161.4 19.3 174 285-468 6-190 (292)
153 PRK12298 obgE GTPase CgtA; Rev 99.8 4.4E-17 9.6E-22 165.6 19.8 192 281-475 156-359 (390)
154 cd01879 FeoB Ferrous iron tran 99.7 3.7E-17 8E-22 146.0 15.7 147 289-449 1-156 (158)
155 PRK03003 GTP-binding protein D 99.7 6.9E-17 1.5E-21 169.7 19.6 164 283-457 210-389 (472)
156 TIGR00231 small_GTP small GTP- 99.7 8.7E-17 1.9E-21 142.7 17.4 156 285-446 2-160 (161)
157 COG1160 Predicted GTPases [Gen 99.7 4.8E-17 1E-21 162.2 16.2 182 285-481 4-208 (444)
158 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.1E-16 2.4E-21 144.5 16.9 156 286-450 2-166 (168)
159 COG1100 GTPase SAR1 and relate 99.7 3.4E-16 7.4E-21 148.0 19.2 162 285-451 6-186 (219)
160 PRK12296 obgE GTPase CgtA; Rev 99.7 1.8E-16 4E-21 163.7 18.2 168 281-452 156-342 (500)
161 PF08477 Miro: Miro-like prote 99.7 6.4E-17 1.4E-21 137.6 12.0 114 286-405 1-119 (119)
162 PRK03003 GTP-binding protein D 99.7 2E-16 4.4E-21 166.1 18.4 156 282-451 36-200 (472)
163 cd01891 TypA_BipA TypA (tyrosi 99.7 2E-16 4.2E-21 146.9 15.4 146 285-440 3-172 (194)
164 PRK15467 ethanolamine utilizat 99.7 1.2E-16 2.6E-21 143.1 12.7 138 286-450 3-147 (158)
165 PRK12297 obgE GTPase CgtA; Rev 99.7 4.7E-16 1E-20 158.8 18.5 164 281-451 155-328 (424)
166 cd01894 EngA1 EngA1 subfamily. 99.7 3.8E-16 8.3E-21 139.1 15.2 147 288-448 1-156 (157)
167 KOG3883 Ras family small GTPas 99.7 8.9E-16 1.9E-20 129.3 15.9 167 282-454 7-179 (198)
168 cd00881 GTP_translation_factor 99.7 7.5E-16 1.6E-20 141.7 17.2 153 286-449 1-186 (189)
169 cd04163 Era Era subfamily. Er 99.7 7.6E-16 1.6E-20 138.1 16.8 155 284-448 3-167 (168)
170 cd01881 Obg_like The Obg-like 99.7 2.4E-16 5.3E-21 143.4 13.6 157 289-448 1-175 (176)
171 cd01895 EngA2 EngA2 subfamily. 99.7 1.4E-15 3E-20 137.6 18.1 155 284-448 2-173 (174)
172 COG1160 Predicted GTPases [Gen 99.7 3.8E-16 8.3E-21 155.8 15.0 163 282-454 176-355 (444)
173 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.9E-16 1.9E-20 136.6 15.9 147 284-449 1-156 (157)
174 PRK04213 GTP-binding protein; 99.7 6.6E-16 1.4E-20 144.1 15.7 154 283-450 8-192 (201)
175 TIGR03594 GTPase_EngA ribosome 99.7 1.1E-15 2.5E-20 159.4 19.0 163 282-454 170-348 (429)
176 cd00882 Ras_like_GTPase Ras-li 99.7 1.1E-15 2.5E-20 134.0 16.0 152 289-446 1-156 (157)
177 PRK00454 engB GTP-binding prot 99.7 2.7E-15 5.9E-20 139.2 18.7 157 281-450 21-194 (196)
178 KOG0075 GTP-binding ADP-ribosy 99.7 6.5E-16 1.4E-20 129.2 11.4 157 282-450 18-182 (186)
179 KOG1423 Ras-like GTPase ERA [C 99.7 1.8E-15 4E-20 142.0 15.5 183 279-468 67-290 (379)
180 TIGR03598 GTPase_YsxC ribosome 99.7 2.2E-15 4.7E-20 138.0 15.8 147 281-439 15-179 (179)
181 cd01889 SelB_euk SelB subfamil 99.7 2.1E-15 4.5E-20 139.7 15.7 158 285-452 1-188 (192)
182 KOG0410 Predicted GTP binding 99.7 2.6E-16 5.6E-21 148.7 8.9 287 126-450 36-341 (410)
183 PF08355 EF_assoc_1: EF hand a 99.7 7.6E-17 1.7E-21 122.4 4.1 70 210-279 1-75 (76)
184 PRK00093 GTP-binding protein D 99.7 6E-15 1.3E-19 154.2 19.9 160 282-451 171-345 (435)
185 TIGR01393 lepA GTP-binding pro 99.6 5.4E-15 1.2E-19 158.3 19.3 160 284-453 3-183 (595)
186 PRK09518 bifunctional cytidyla 99.6 5E-15 1.1E-19 162.8 19.5 166 282-457 448-628 (712)
187 KOG1191 Mitochondrial GTPase [ 99.6 1.3E-15 2.8E-20 151.8 13.2 181 267-450 251-450 (531)
188 KOG0070 GTP-binding ADP-ribosy 99.6 1.8E-15 3.9E-20 133.0 12.4 158 281-451 14-179 (181)
189 KOG0031 Myosin regulatory ligh 99.6 8.2E-16 1.8E-20 129.4 9.7 138 50-205 25-165 (171)
190 TIGR00487 IF-2 translation ini 99.6 9E-15 2E-19 155.8 20.1 157 280-448 83-248 (587)
191 PRK00093 GTP-binding protein D 99.6 3.9E-15 8.4E-20 155.6 16.9 151 285-449 2-161 (435)
192 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 7.3E-16 1.6E-20 134.8 8.7 161 282-450 8-169 (216)
193 TIGR03594 GTPase_EngA ribosome 99.6 7.8E-15 1.7E-19 153.1 18.1 152 286-451 1-161 (429)
194 TIGR00437 feoB ferrous iron tr 99.6 4.6E-15 9.9E-20 158.9 15.3 147 291-449 1-154 (591)
195 PRK09554 feoB ferrous iron tra 99.6 1.8E-14 3.9E-19 157.9 18.2 154 284-450 3-168 (772)
196 KOG1673 Ras GTPases [General f 99.6 6.3E-15 1.4E-19 124.4 11.0 173 282-461 18-197 (205)
197 cd01888 eIF2_gamma eIF2-gamma 99.6 3.1E-14 6.7E-19 133.0 16.6 160 285-452 1-201 (203)
198 TIGR00475 selB selenocysteine- 99.6 2.9E-14 6.3E-19 152.6 18.2 156 285-451 1-167 (581)
199 PRK09518 bifunctional cytidyla 99.6 3.2E-14 6.9E-19 156.5 18.9 156 282-451 273-437 (712)
200 cd00880 Era_like Era (E. coli 99.6 3.9E-14 8.5E-19 125.6 14.5 151 289-448 1-162 (163)
201 PTZ00183 centrin; Provisional 99.6 1.1E-14 2.4E-19 130.2 11.0 146 49-208 9-157 (158)
202 PF00009 GTP_EFTU: Elongation 99.6 2.9E-14 6.2E-19 131.6 14.0 155 283-449 2-186 (188)
203 PF10662 PduV-EutP: Ethanolami 99.6 2.2E-14 4.8E-19 123.3 12.1 133 286-446 3-142 (143)
204 CHL00189 infB translation init 99.6 7E-14 1.5E-18 151.0 18.7 161 280-449 240-409 (742)
205 KOG0071 GTP-binding ADP-ribosy 99.6 4.1E-14 8.9E-19 117.6 12.9 156 282-450 15-178 (180)
206 KOG4423 GTP-binding protein-li 99.6 2.1E-16 4.6E-21 137.5 -1.3 171 281-453 22-197 (229)
207 KOG0030 Myosin essential light 99.6 6.3E-15 1.4E-19 122.0 7.3 138 51-201 5-147 (152)
208 cd01896 DRG The developmentall 99.6 1.5E-13 3.2E-18 131.0 17.7 155 286-450 2-226 (233)
209 cd04105 SR_beta Signal recogni 99.6 5.8E-14 1.3E-18 131.0 14.5 123 286-411 2-126 (203)
210 cd01876 YihA_EngB The YihA (En 99.6 1.7E-13 3.8E-18 123.1 16.9 153 286-448 1-169 (170)
211 KOG0074 GTP-binding ADP-ribosy 99.5 3.5E-14 7.6E-19 118.1 10.0 156 281-448 14-177 (185)
212 KOG1707 Predicted Ras related/ 99.5 3.3E-14 7.2E-19 144.3 11.8 168 281-453 6-178 (625)
213 COG0218 Predicted GTPase [Gene 99.5 6.3E-13 1.4E-17 119.5 18.6 157 282-450 22-197 (200)
214 PRK05306 infB translation init 99.5 1.6E-13 3.6E-18 149.5 17.8 158 281-449 287-451 (787)
215 KOG1489 Predicted GTP-binding 99.5 8.1E-14 1.8E-18 131.9 12.4 162 281-448 193-365 (366)
216 KOG0076 GTP-binding ADP-ribosy 99.5 3.6E-14 7.8E-19 122.6 9.1 166 281-452 14-189 (197)
217 PRK05433 GTP-binding protein L 99.5 3.5E-13 7.7E-18 144.5 18.2 161 283-453 6-187 (600)
218 TIGR00491 aIF-2 translation in 99.5 2.7E-13 5.8E-18 144.2 16.6 154 284-449 4-215 (590)
219 COG1084 Predicted GTPase [Gene 99.5 1.4E-12 2.9E-17 124.8 18.5 167 279-453 163-339 (346)
220 COG0370 FeoB Fe2+ transport sy 99.5 3.9E-13 8.4E-18 140.4 15.8 156 284-453 3-167 (653)
221 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.4E-12 3E-17 120.7 17.3 146 284-438 2-171 (195)
222 PTZ00184 calmodulin; Provision 99.5 1.5E-13 3.4E-18 121.3 10.1 142 49-204 3-147 (149)
223 cd04166 CysN_ATPS CysN_ATPS su 99.5 6E-13 1.3E-17 124.8 14.3 145 286-441 1-185 (208)
224 PRK10512 selenocysteinyl-tRNA- 99.5 1.8E-12 3.8E-17 139.4 18.8 154 286-449 2-165 (614)
225 PRK10218 GTP-binding protein; 99.4 3.8E-12 8.3E-17 135.9 18.9 162 282-453 3-198 (607)
226 PRK12317 elongation factor 1-a 99.4 1E-12 2.3E-17 136.6 14.0 152 281-442 3-197 (425)
227 cd04165 GTPBP1_like GTPBP1-lik 99.4 5E-12 1.1E-16 119.5 16.7 151 286-447 1-220 (224)
228 TIGR01394 TypA_BipA GTP-bindin 99.4 3E-12 6.5E-17 136.9 16.9 158 286-453 3-194 (594)
229 COG2229 Predicted GTPase [Gene 99.4 9E-12 1.9E-16 109.6 16.7 157 281-448 7-176 (187)
230 cd04167 Snu114p Snu114p subfam 99.4 2.4E-12 5.2E-17 121.2 13.5 113 286-407 2-136 (213)
231 COG1163 DRG Predicted GTPase [ 99.4 1.3E-11 2.9E-16 117.6 18.3 162 281-451 60-290 (365)
232 COG0536 Obg Predicted GTPase [ 99.4 3.2E-12 6.9E-17 122.8 14.0 170 282-453 157-336 (369)
233 PRK04004 translation initiatio 99.4 6.5E-12 1.4E-16 134.3 17.7 155 283-449 5-217 (586)
234 TIGR00483 EF-1_alpha translati 99.4 3E-12 6.6E-17 133.1 14.6 153 281-442 4-199 (426)
235 TIGR03680 eif2g_arch translati 99.4 9E-12 1.9E-16 128.5 16.9 160 283-450 3-196 (406)
236 PRK12736 elongation factor Tu; 99.4 2E-11 4.3E-16 125.4 18.6 161 281-450 9-201 (394)
237 cd01899 Ygr210 Ygr210 subfamil 99.4 2.1E-11 4.4E-16 120.7 17.9 61 394-457 214-277 (318)
238 PRK12735 elongation factor Tu; 99.4 2E-11 4.3E-16 125.5 18.3 161 281-450 9-203 (396)
239 cd04104 p47_IIGP_like p47 (47- 99.4 1.2E-11 2.7E-16 114.9 15.0 155 284-450 1-184 (197)
240 PRK04000 translation initiatio 99.4 1.2E-11 2.6E-16 127.5 16.3 161 281-450 6-201 (411)
241 CHL00071 tufA elongation facto 99.3 4.3E-11 9.3E-16 123.6 18.6 148 281-437 9-180 (409)
242 cd04168 TetM_like Tet(M)-like 99.3 2E-11 4.2E-16 116.5 14.3 131 286-426 1-147 (237)
243 cd01883 EF1_alpha Eukaryotic e 99.3 1.5E-11 3.3E-16 116.2 13.3 144 286-439 1-194 (219)
244 cd04169 RF3 RF3 subfamily. Pe 99.3 4.1E-11 8.9E-16 116.3 16.3 132 285-426 3-154 (267)
245 TIGR00485 EF-Tu translation el 99.3 6.3E-11 1.4E-15 121.9 17.2 146 281-435 9-177 (394)
246 PF01926 MMR_HSR1: 50S ribosom 99.3 3.7E-11 8.1E-16 101.6 12.9 107 286-403 1-116 (116)
247 KOG0034 Ca2+/calmodulin-depend 99.3 9.8E-12 2.1E-16 112.4 8.8 150 49-209 25-179 (187)
248 COG0532 InfB Translation initi 99.3 1.3E-10 2.9E-15 118.4 17.7 158 283-451 4-171 (509)
249 PLN03126 Elongation factor Tu; 99.3 1.4E-10 3.1E-15 121.0 18.6 147 280-437 77-249 (478)
250 cd01886 EF-G Elongation factor 99.3 1.5E-11 3.2E-16 119.5 10.5 137 286-434 1-158 (270)
251 KOG0072 GTP-binding ADP-ribosy 99.3 1.3E-11 2.9E-16 103.3 8.3 156 283-451 17-180 (182)
252 PRK00049 elongation factor Tu; 99.3 2E-10 4.3E-15 118.1 18.7 160 281-449 9-202 (396)
253 PRK09602 translation-associate 99.3 3.5E-10 7.7E-15 115.4 19.9 69 394-466 217-288 (396)
254 cd01850 CDC_Septin CDC/Septin. 99.3 9E-11 1.9E-15 114.5 14.8 143 284-435 4-186 (276)
255 PRK09866 hypothetical protein; 99.2 3.7E-10 8.1E-15 117.8 19.0 111 333-448 230-351 (741)
256 cd04170 EF-G_bact Elongation f 99.2 1.5E-10 3.3E-15 112.9 15.0 129 286-426 1-147 (268)
257 PF09439 SRPRB: Signal recogni 99.2 4.5E-11 9.9E-16 107.6 10.3 122 285-410 4-128 (181)
258 cd01885 EF2 EF2 (for archaea a 99.2 2.9E-10 6.3E-15 107.1 16.0 113 286-407 2-138 (222)
259 KOG1145 Mitochondrial translat 99.2 3.9E-10 8.5E-15 114.0 17.4 162 278-450 147-316 (683)
260 PRK05506 bifunctional sulfate 99.2 1.6E-10 3.5E-15 125.9 16.1 150 281-440 21-211 (632)
261 PLN03127 Elongation factor Tu; 99.2 4.3E-10 9.4E-15 116.8 18.0 161 281-450 58-252 (447)
262 TIGR02034 CysN sulfate adenyly 99.2 1.9E-10 4.2E-15 118.6 15.0 146 285-440 1-187 (406)
263 PRK05124 cysN sulfate adenylyl 99.2 2.2E-10 4.7E-15 120.1 15.1 152 281-442 24-217 (474)
264 PRK00741 prfC peptide chain re 99.2 7.4E-10 1.6E-14 117.1 17.9 117 283-408 9-145 (526)
265 KOG1490 GTP-binding protein CR 99.2 1.2E-10 2.7E-15 116.4 10.7 163 280-449 164-340 (620)
266 KOG0077 Vesicle coat complex C 99.2 1.5E-10 3.3E-15 99.5 9.7 155 284-447 20-190 (193)
267 PRK13351 elongation factor G; 99.2 5.7E-10 1.2E-14 122.9 16.6 115 282-409 6-140 (687)
268 COG3596 Predicted GTPase [Gene 99.1 4E-10 8.6E-15 105.6 12.1 157 281-449 36-221 (296)
269 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 2.7E-09 5.8E-14 99.1 17.1 160 285-451 1-185 (196)
270 PTZ00327 eukaryotic translatio 99.1 1.6E-09 3.4E-14 112.4 16.1 161 282-450 32-233 (460)
271 COG4917 EutP Ethanolamine util 99.1 5.4E-10 1.2E-14 91.7 9.7 139 286-448 3-144 (148)
272 TIGR00484 EF-G translation elo 99.1 9.7E-10 2.1E-14 120.9 15.1 142 282-435 8-170 (689)
273 PLN00043 elongation factor 1-a 99.1 1.9E-09 4.1E-14 112.1 16.1 151 281-440 4-203 (447)
274 PTZ00258 GTP-binding protein; 99.1 3.8E-09 8.3E-14 106.7 16.6 88 281-369 18-126 (390)
275 PRK12739 elongation factor G; 99.1 3.3E-09 7.2E-14 116.7 16.7 116 282-408 6-139 (691)
276 TIGR00503 prfC peptide chain r 99.1 1.4E-09 3E-14 115.1 13.1 135 282-426 9-163 (527)
277 PTZ00141 elongation factor 1- 99.0 3E-09 6.4E-14 110.7 14.2 152 281-440 4-203 (446)
278 KOG0037 Ca2+-binding protein, 99.0 8.3E-10 1.8E-14 99.5 8.4 134 56-208 56-191 (221)
279 cd01882 BMS1 Bms1. Bms1 is an 99.0 7.4E-09 1.6E-13 98.2 15.0 138 281-435 36-180 (225)
280 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 5.7E-09 1.2E-13 98.3 14.0 158 286-450 1-176 (232)
281 KOG0462 Elongation factor-type 99.0 7E-09 1.5E-13 105.2 14.1 162 282-453 58-238 (650)
282 cd05022 S-100A13 S-100A13: S-1 99.0 1.8E-09 3.8E-14 85.9 7.8 70 53-127 4-75 (89)
283 PRK00007 elongation factor G; 99.0 6.9E-09 1.5E-13 114.1 14.6 141 282-435 8-170 (693)
284 TIGR00157 ribosome small subun 98.9 3.3E-09 7.1E-14 101.8 9.5 93 345-447 25-120 (245)
285 cd05027 S-100B S-100B: S-100B 98.9 4.1E-09 9E-14 83.9 8.4 70 53-127 4-79 (88)
286 KOG3905 Dynein light intermedi 98.9 3.2E-08 6.9E-13 94.2 15.4 174 280-457 48-297 (473)
287 PRK12740 elongation factor G; 98.9 1.9E-08 4.2E-13 110.7 16.1 108 290-408 1-126 (668)
288 KOG0090 Signal recognition par 98.9 1.4E-08 3E-13 91.5 11.9 119 285-410 39-161 (238)
289 PRK09601 GTP-binding protein Y 98.9 4E-08 8.7E-13 98.2 16.3 84 285-369 3-107 (364)
290 TIGR00073 hypB hydrogenase acc 98.9 1.6E-08 3.6E-13 94.6 12.2 55 394-448 148-205 (207)
291 COG0481 LepA Membrane GTPase L 98.9 2.1E-08 4.5E-13 100.2 13.1 162 282-453 7-189 (603)
292 PRK09435 membrane ATPase/prote 98.9 2.9E-08 6.4E-13 98.5 13.7 102 333-450 149-260 (332)
293 TIGR02836 spore_IV_A stage IV 98.9 6.2E-08 1.3E-12 96.5 15.7 158 280-445 13-232 (492)
294 PRK14845 translation initiatio 98.9 4.4E-08 9.5E-13 109.8 16.5 143 295-449 472-672 (1049)
295 PLN02964 phosphatidylserine de 98.9 5.6E-09 1.2E-13 111.0 8.3 99 50-158 136-239 (644)
296 smart00010 small_GTPase Small 98.8 2E-08 4.3E-13 85.4 10.1 113 285-439 1-115 (124)
297 cd05026 S-100Z S-100Z: S-100Z 98.8 1.7E-08 3.7E-13 81.5 9.0 70 53-127 6-81 (93)
298 KOG0036 Predicted mitochondria 98.8 1.1E-08 2.3E-13 100.2 8.4 141 49-208 6-149 (463)
299 smart00027 EH Eps15 homology d 98.8 2E-08 4.3E-13 81.8 8.8 70 49-126 2-71 (96)
300 KOG1532 GTPase XAB1, interacts 98.8 1.4E-07 3E-12 88.1 15.3 88 358-451 147-265 (366)
301 cd01853 Toc34_like Toc34-like 98.8 1.2E-07 2.7E-12 90.9 14.9 128 278-410 25-165 (249)
302 TIGR00490 aEF-2 translation el 98.8 2.6E-08 5.7E-13 110.0 11.2 118 282-408 17-152 (720)
303 PRK13768 GTPase; Provisional 98.8 8E-08 1.7E-12 92.7 13.0 113 334-450 98-247 (253)
304 cd01900 YchF YchF subfamily. 98.8 5.8E-08 1.2E-12 94.0 11.8 82 287-369 1-103 (274)
305 cd05025 S-100A1 S-100A1: S-100 98.8 4.4E-08 9.5E-13 79.0 8.9 70 53-127 5-80 (92)
306 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2E-07 4.4E-12 90.8 14.4 123 281-408 35-167 (313)
307 PF05783 DLIC: Dynein light in 98.7 1.8E-07 3.9E-12 97.0 14.8 168 282-454 23-268 (472)
308 cd00213 S-100 S-100: S-100 dom 98.7 5.2E-08 1.1E-12 77.9 8.0 70 53-127 4-79 (88)
309 PF13499 EF-hand_7: EF-hand do 98.7 2.9E-08 6.2E-13 74.7 6.1 62 58-125 1-66 (66)
310 TIGR00101 ureG urease accessor 98.7 1E-07 2.2E-12 88.5 10.6 78 359-449 113-195 (199)
311 cd05031 S-100A10_like S-100A10 98.7 7.1E-08 1.5E-12 78.1 8.4 69 53-126 4-78 (94)
312 TIGR00750 lao LAO/AO transport 98.7 2E-07 4.2E-12 92.4 12.5 102 333-450 127-238 (300)
313 KOG0027 Calmodulin and related 98.7 5.1E-08 1.1E-12 86.5 7.3 67 54-126 82-148 (151)
314 cd05029 S-100A6 S-100A6: S-100 98.7 1.2E-07 2.6E-12 75.5 8.5 70 53-127 6-79 (88)
315 PF14658 EF-hand_9: EF-hand do 98.6 7.9E-08 1.7E-12 70.5 5.8 64 61-128 2-65 (66)
316 COG1217 TypA Predicted membran 98.6 7.2E-07 1.6E-11 89.2 14.0 159 284-454 5-199 (603)
317 KOG0044 Ca2+ sensor (EF-Hand s 98.6 8.5E-08 1.8E-12 87.0 6.9 152 48-207 20-177 (193)
318 COG5126 FRQ1 Ca2+-binding prot 98.6 1E-07 2.2E-12 83.5 7.0 66 55-126 90-155 (160)
319 KOG0028 Ca2+-binding protein ( 98.6 1.8E-07 3.9E-12 80.1 7.7 65 56-126 105-169 (172)
320 COG0012 Predicted GTPase, prob 98.6 9.9E-07 2.1E-11 87.0 13.7 41 394-435 206-248 (372)
321 PF04548 AIG1: AIG1 family; I 98.6 1.8E-06 3.8E-11 81.2 14.8 160 285-452 1-188 (212)
322 PF05049 IIGP: Interferon-indu 98.6 7.3E-07 1.6E-11 89.3 12.7 154 281-449 32-217 (376)
323 PF00350 Dynamin_N: Dynamin fa 98.6 5.1E-07 1.1E-11 81.4 10.5 64 335-404 103-168 (168)
324 PTZ00416 elongation factor 2; 98.5 4.2E-07 9.1E-12 101.8 11.8 117 282-407 17-157 (836)
325 cd01855 YqeH YqeH. YqeH is an 98.5 4.9E-07 1.1E-11 83.4 10.0 89 353-450 29-125 (190)
326 KOG4223 Reticulocalbin, calume 98.5 2.2E-07 4.8E-12 88.7 7.3 138 56-205 162-305 (325)
327 COG5256 TEF1 Translation elong 98.5 1.4E-06 3E-11 86.6 13.1 153 281-440 4-201 (428)
328 KOG1486 GTP-binding protein DR 98.5 2.6E-06 5.7E-11 78.7 13.6 162 281-451 59-289 (364)
329 PLN00116 translation elongatio 98.5 7.3E-07 1.6E-11 100.1 12.0 118 281-407 16-163 (843)
330 smart00053 DYNc Dynamin, GTPas 98.5 2.5E-06 5.5E-11 81.0 13.9 52 353-410 156-208 (240)
331 PRK12289 GTPase RsgA; Reviewed 98.5 3.4E-07 7.4E-12 91.9 8.4 86 354-447 85-172 (352)
332 COG5257 GCD11 Translation init 98.5 1.4E-06 2.9E-11 83.4 11.4 165 282-453 8-205 (415)
333 cd01859 MJ1464 MJ1464. This f 98.5 6.3E-07 1.4E-11 79.9 8.8 88 354-450 8-96 (156)
334 KOG1144 Translation initiation 98.5 9.7E-07 2.1E-11 92.5 11.0 159 283-450 474-687 (1064)
335 cd01858 NGP_1 NGP-1. Autoanti 98.5 3.4E-07 7.5E-12 81.7 6.8 88 354-449 4-94 (157)
336 cd05023 S-100A11 S-100A11: S-1 98.5 1E-06 2.2E-11 70.3 8.5 70 53-127 5-80 (89)
337 PRK00098 GTPase RsgA; Reviewed 98.5 5.7E-07 1.2E-11 88.9 8.8 85 355-446 77-163 (298)
338 COG2895 CysN GTPases - Sulfate 98.4 3.3E-06 7.2E-11 81.9 13.2 148 281-439 3-192 (431)
339 PF03029 ATP_bind_1: Conserved 98.4 9.3E-07 2E-11 84.3 9.6 110 334-449 92-236 (238)
340 TIGR03597 GTPase_YqeH ribosome 98.4 1.1E-06 2.4E-11 89.2 10.4 122 342-474 49-177 (360)
341 COG3276 SelB Selenocysteine-sp 98.4 4.3E-06 9.3E-11 83.8 14.1 153 286-450 2-162 (447)
342 PRK07560 elongation factor EF- 98.4 1.7E-06 3.7E-11 96.0 11.9 117 282-407 18-152 (731)
343 cd01854 YjeQ_engC YjeQ/EngC. 98.4 1.2E-06 2.6E-11 86.2 9.4 85 355-447 75-161 (287)
344 cd00052 EH Eps15 homology doma 98.4 1.2E-06 2.6E-11 65.8 7.0 61 59-127 1-61 (67)
345 KOG0038 Ca2+-binding kinase in 98.4 3.3E-07 7.3E-12 76.9 4.0 94 112-208 84-180 (189)
346 PRK10463 hydrogenase nickel in 98.4 6.6E-07 1.4E-11 86.6 6.6 55 394-448 230-287 (290)
347 PF03308 ArgK: ArgK protein; 98.4 1.2E-06 2.6E-11 82.5 8.0 152 282-449 27-229 (266)
348 PRK12288 GTPase RsgA; Reviewed 98.3 2.1E-06 4.5E-11 86.3 9.7 108 356-474 118-228 (347)
349 KOG0705 GTPase-activating prot 98.3 1.2E-06 2.6E-11 88.9 7.7 156 283-449 29-188 (749)
350 KOG3886 GTP-binding protein [S 98.3 1.7E-06 3.7E-11 79.0 7.6 123 285-412 5-134 (295)
351 COG0378 HypB Ni2+-binding GTPa 98.3 5.8E-06 1.3E-10 74.3 10.7 53 397-449 145-200 (202)
352 COG0050 TufB GTPases - transla 98.3 1.3E-05 2.8E-10 76.0 13.0 162 281-452 9-203 (394)
353 KOG4223 Reticulocalbin, calume 98.3 3E-06 6.6E-11 81.1 8.6 186 50-247 69-276 (325)
354 KOG0461 Selenocysteine-specifi 98.3 3.1E-05 6.6E-10 74.9 15.3 162 282-454 5-197 (522)
355 TIGR00993 3a0901s04IAP86 chlor 98.3 1.4E-05 3.1E-10 84.4 14.1 124 281-409 115-251 (763)
356 cd01849 YlqF_related_GTPase Yl 98.2 2.4E-06 5.3E-11 76.0 7.0 80 360-448 1-83 (155)
357 TIGR03596 GTPase_YlqF ribosome 98.2 4.7E-06 1E-10 81.6 8.4 99 340-450 4-103 (276)
358 PF00735 Septin: Septin; Inte 98.2 1.4E-05 3E-10 78.1 11.5 138 284-430 4-180 (281)
359 PTZ00183 centrin; Provisional 98.2 6.8E-06 1.5E-10 73.1 8.3 95 58-157 54-148 (158)
360 PRK13796 GTPase YqeH; Provisio 98.2 9.8E-06 2.1E-10 82.4 10.4 113 353-474 63-183 (365)
361 PF13499 EF-hand_7: EF-hand do 98.2 6.4E-07 1.4E-11 67.3 1.2 63 137-203 2-66 (66)
362 COG1703 ArgK Putative periplas 98.2 7.7E-05 1.7E-09 71.4 15.4 85 356-451 162-255 (323)
363 PF00036 EF-hand_1: EF hand; 98.2 1.7E-06 3.7E-11 53.2 2.8 28 58-85 1-28 (29)
364 cd01856 YlqF YlqF. Proteins o 98.2 7.1E-06 1.5E-10 74.3 8.2 92 347-449 8-100 (171)
365 KOG0037 Ca2+-binding protein, 98.1 1.3E-05 2.8E-10 72.7 9.4 98 44-153 103-208 (221)
366 cd05022 S-100A13 S-100A13: S-1 98.1 1.1E-06 2.3E-11 69.9 2.1 64 135-205 8-75 (89)
367 KOG0468 U5 snRNP-specific prot 98.1 1.4E-05 3E-10 83.1 10.6 118 281-407 125-262 (971)
368 KOG0044 Ca2+ sensor (EF-Hand s 98.1 4.7E-06 1E-10 75.7 6.3 147 72-234 7-170 (193)
369 cd00252 SPARC_EC SPARC_EC; ext 98.1 1.1E-05 2.5E-10 67.4 7.8 68 48-125 39-106 (116)
370 KOG2486 Predicted GTPase [Gene 98.1 7.8E-06 1.7E-10 77.0 6.9 153 282-448 134-314 (320)
371 cd05030 calgranulins Calgranul 98.1 1.7E-05 3.8E-10 63.2 7.8 71 53-128 4-80 (88)
372 PF13405 EF-hand_6: EF-hand do 98.1 4E-06 8.6E-11 52.6 3.1 31 58-88 1-31 (31)
373 cd04178 Nucleostemin_like Nucl 98.0 1.5E-05 3.3E-10 72.1 7.2 56 281-342 114-171 (172)
374 KOG1487 GTP-binding protein DR 98.0 3E-05 6.6E-10 72.2 9.1 155 285-449 60-280 (358)
375 COG0480 FusA Translation elong 98.0 7.1E-05 1.5E-09 81.3 13.4 120 281-410 7-144 (697)
376 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.3E-05 5.1E-10 69.8 8.0 54 283-342 101-156 (157)
377 COG4108 PrfC Peptide chain rel 98.0 7.5E-05 1.6E-09 74.6 12.0 147 286-444 14-187 (528)
378 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.6E-05 3.5E-10 78.2 7.3 100 339-450 6-106 (287)
379 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.1E-05 4.5E-10 68.8 6.9 76 353-437 6-84 (141)
380 COG5192 BMS1 GTP-binding prote 98.0 7.6E-05 1.6E-09 76.4 11.6 140 279-435 64-210 (1077)
381 PTZ00184 calmodulin; Provision 97.9 2.9E-05 6.4E-10 68.1 7.9 96 57-157 47-142 (149)
382 KOG0041 Predicted Ca2+-binding 97.9 3.1E-05 6.7E-10 68.9 7.3 72 50-127 92-163 (244)
383 PF13833 EF-hand_8: EF-hand do 97.9 3E-05 6.6E-10 55.5 5.8 51 70-126 1-52 (54)
384 PLN02964 phosphatidylserine de 97.9 8.4E-06 1.8E-10 87.2 3.8 150 38-206 89-244 (644)
385 PF00036 EF-hand_1: EF hand; 97.9 5.6E-06 1.2E-10 50.9 1.3 27 178-204 1-27 (29)
386 cd00051 EFh EF-hand, calcium b 97.9 5.4E-05 1.2E-09 55.0 7.0 60 59-124 2-61 (63)
387 COG5019 CDC3 Septin family pro 97.8 0.00053 1.2E-08 67.6 14.5 137 282-426 21-197 (373)
388 PRK09563 rbgA GTPase YlqF; Rev 97.8 8.5E-05 1.8E-09 73.2 9.0 59 281-343 118-176 (287)
389 COG1161 Predicted GTPases [Gen 97.8 7.3E-05 1.6E-09 74.6 8.3 62 278-343 126-187 (322)
390 KOG0458 Elongation factor 1 al 97.8 0.00024 5.1E-09 73.6 11.9 153 281-441 174-373 (603)
391 PF13202 EF-hand_5: EF hand; P 97.8 2E-05 4.4E-10 46.6 2.4 24 59-82 1-24 (25)
392 KOG0034 Ca2+/calmodulin-depend 97.8 0.00011 2.3E-09 66.9 8.1 69 57-126 104-174 (187)
393 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 5.3E-05 1.1E-09 66.2 6.1 54 286-343 85-138 (141)
394 cd05027 S-100B S-100B: S-100B 97.7 1.1E-05 2.5E-10 64.1 1.4 67 135-204 8-78 (88)
395 COG5258 GTPBP1 GTPase [General 97.7 0.00037 8.1E-09 68.6 11.8 164 277-447 110-336 (527)
396 TIGR03596 GTPase_YlqF ribosome 97.7 0.00013 2.8E-09 71.4 8.4 56 282-343 116-173 (276)
397 TIGR00092 GTP-binding protein 97.7 0.00012 2.7E-09 73.4 8.1 83 285-369 3-108 (368)
398 cd01856 YlqF YlqF. Proteins o 97.7 0.00012 2.6E-09 66.3 7.0 59 281-343 112-170 (171)
399 cd05031 S-100A10_like S-100A10 97.6 2.1E-05 4.6E-10 63.6 1.5 68 135-205 8-79 (94)
400 cd05026 S-100Z S-100Z: S-100Z 97.6 1.6E-05 3.5E-10 64.1 0.7 68 135-205 10-81 (93)
401 KOG0460 Mitochondrial translat 97.6 0.00097 2.1E-08 64.8 12.5 146 281-435 51-219 (449)
402 KOG1954 Endocytosis/signaling 97.6 0.00052 1.1E-08 67.2 10.8 125 282-414 56-231 (532)
403 KOG0377 Protein serine/threoni 97.5 0.00022 4.8E-09 70.7 7.1 135 57-206 464-616 (631)
404 KOG0448 Mitofusin 1 GTPase, in 97.5 0.0012 2.5E-08 69.8 12.6 51 353-410 227-277 (749)
405 PRK01889 GTPase RsgA; Reviewed 97.5 0.00045 9.7E-09 70.1 9.4 83 355-446 109-193 (356)
406 cd01851 GBP Guanylate-binding 97.5 0.00056 1.2E-08 64.8 9.3 91 281-372 4-105 (224)
407 cd01859 MJ1464 MJ1464. This f 97.5 0.00031 6.7E-09 62.4 6.9 56 283-342 100-155 (156)
408 KOG0040 Ca2+-binding actin-bun 97.5 0.00086 1.9E-08 75.4 11.3 142 45-204 2241-2397(2399)
409 cd00052 EH Eps15 homology doma 97.5 5.3E-05 1.2E-09 56.7 1.5 59 138-205 2-61 (67)
410 cd03112 CobW_like The function 97.4 0.00055 1.2E-08 61.1 8.2 23 286-308 2-24 (158)
411 cd00252 SPARC_EC SPARC_EC; ext 97.4 0.00011 2.4E-09 61.4 3.5 61 135-207 48-109 (116)
412 KOG2655 Septin family protein 97.4 0.0021 4.4E-08 64.0 12.6 137 282-426 19-193 (366)
413 KOG0082 G-protein alpha subuni 97.4 0.00092 2E-08 66.4 9.8 114 335-452 197-346 (354)
414 cd05023 S-100A11 S-100A11: S-1 97.4 0.00012 2.5E-09 58.4 2.9 67 135-204 9-79 (89)
415 cd01855 YqeH YqeH. YqeH is an 97.4 0.00028 6E-09 65.0 5.5 25 285-309 128-152 (190)
416 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00066 1.4E-08 48.4 6.0 45 357-405 12-58 (58)
417 KOG2643 Ca2+ binding protein, 97.4 0.00033 7.2E-09 69.7 6.2 136 57-206 318-454 (489)
418 cd05025 S-100A1 S-100A1: S-100 97.3 0.00011 2.5E-09 59.0 2.3 64 135-205 9-80 (92)
419 KOG1424 Predicted GTP-binding 97.3 0.00024 5.3E-09 72.5 4.8 65 281-350 311-375 (562)
420 cd05024 S-100A10 S-100A10: A s 97.3 0.001 2.2E-08 52.7 7.2 68 53-126 4-75 (91)
421 cd01849 YlqF_related_GTPase Yl 97.3 0.00086 1.9E-08 59.6 7.8 55 282-342 98-154 (155)
422 PF13202 EF-hand_5: EF hand; P 97.3 0.00012 2.6E-09 43.3 1.3 24 179-202 1-24 (25)
423 cd00066 G-alpha G protein alph 97.3 0.0024 5.2E-08 63.8 11.3 71 333-407 161-241 (317)
424 smart00027 EH Eps15 homology d 97.3 0.00013 2.9E-09 59.2 1.8 62 135-205 10-72 (96)
425 PF03193 DUF258: Protein of un 97.3 0.00031 6.8E-09 62.2 4.2 23 286-308 37-59 (161)
426 KOG1491 Predicted GTP-binding 97.2 0.00085 1.8E-08 65.3 7.4 84 282-370 18-126 (391)
427 COG1618 Predicted nucleotide k 97.2 0.029 6.3E-07 49.2 16.0 151 282-451 3-177 (179)
428 cd05029 S-100A6 S-100A6: S-100 97.2 0.00013 2.7E-09 58.1 1.5 64 136-204 11-78 (88)
429 KOG1143 Predicted translation 97.2 0.0022 4.8E-08 62.9 9.9 153 283-444 166-382 (591)
430 smart00275 G_alpha G protein a 97.2 0.0027 5.9E-08 64.0 11.1 87 314-408 169-265 (342)
431 PRK12289 GTPase RsgA; Reviewed 97.2 0.00058 1.3E-08 68.8 6.1 51 287-343 175-234 (352)
432 PRK12288 GTPase RsgA; Reviewed 97.1 0.0008 1.7E-08 67.8 6.2 23 287-309 208-230 (347)
433 KOG1547 Septin CDC10 and relat 97.1 0.0081 1.8E-07 55.7 11.3 142 282-432 44-224 (336)
434 TIGR00157 ribosome small subun 97.0 0.0011 2.3E-08 63.8 6.0 24 286-309 122-145 (245)
435 cd00213 S-100 S-100: S-100 dom 97.0 0.00022 4.7E-09 56.8 0.9 68 135-205 8-79 (88)
436 PRK13695 putative NTPase; Prov 97.0 0.0088 1.9E-07 54.1 11.5 22 285-306 1-22 (174)
437 KOG0030 Myosin essential light 97.0 0.00064 1.4E-08 57.2 3.5 61 56-123 87-147 (152)
438 PRK13796 GTPase YqeH; Provisio 97.0 0.0012 2.6E-08 67.3 6.1 53 285-343 161-220 (365)
439 cd04178 Nucleostemin_like Nucl 97.0 0.00086 1.9E-08 60.6 4.5 58 360-422 1-58 (172)
440 KOG2643 Ca2+ binding protein, 97.0 0.0016 3.4E-08 65.1 6.5 28 57-84 233-260 (489)
441 KOG0031 Myosin regulatory ligh 96.9 0.0033 7.1E-08 54.0 7.2 65 56-126 100-164 (171)
442 TIGR03348 VI_IcmF type VI secr 96.9 0.0039 8.4E-08 73.0 10.3 117 283-407 110-256 (1169)
443 KOG0466 Translation initiation 96.9 0.00092 2E-08 63.8 4.1 161 282-452 36-243 (466)
444 KOG0467 Translation elongation 96.9 0.0039 8.4E-08 66.6 8.9 117 281-406 6-136 (887)
445 PRK12727 flagellar biosynthesi 96.9 0.029 6.2E-07 59.0 15.2 137 282-432 348-518 (559)
446 KOG0447 Dynamin-like GTP bindi 96.9 0.023 4.9E-07 58.6 13.9 62 353-420 443-506 (980)
447 PF09547 Spore_IV_A: Stage IV 96.9 0.085 1.8E-06 53.5 17.5 81 361-449 148-233 (492)
448 PF13405 EF-hand_6: EF-hand do 96.9 0.0005 1.1E-08 43.0 1.3 27 178-204 1-27 (31)
449 PF12763 EF-hand_4: Cytoskelet 96.9 0.0017 3.6E-08 53.2 4.7 68 50-126 3-70 (104)
450 TIGR03597 GTPase_YqeH ribosome 96.8 0.0016 3.4E-08 66.3 5.6 112 285-409 155-281 (360)
451 COG1162 Predicted GTPases [Gen 96.8 0.0083 1.8E-07 58.3 10.0 87 355-448 76-165 (301)
452 KOG0038 Ca2+-binding kinase in 96.8 0.0037 7.9E-08 53.0 6.6 72 53-126 105-176 (189)
453 KOG4251 Calcium binding protei 96.8 0.0019 4E-08 59.5 5.0 137 54-204 98-263 (362)
454 PRK11537 putative GTP-binding 96.8 0.016 3.5E-07 57.8 11.8 24 284-307 4-27 (318)
455 KOG2562 Protein phosphatase 2 96.7 0.0022 4.7E-08 64.6 5.3 96 57-157 275-373 (493)
456 PF02492 cobW: CobW/HypB/UreG, 96.7 0.002 4.3E-08 58.7 4.6 60 357-424 112-171 (178)
457 COG1162 Predicted GTPases [Gen 96.7 0.0029 6.3E-08 61.4 5.9 53 286-344 166-227 (301)
458 TIGR01425 SRP54_euk signal rec 96.7 0.016 3.4E-07 59.8 11.3 115 284-408 100-253 (429)
459 COG0523 Putative GTPases (G3E 96.6 0.035 7.7E-07 55.2 13.2 77 357-443 115-194 (323)
460 PRK12309 transaldolase/EF-hand 96.6 0.0026 5.7E-08 64.7 5.2 167 13-205 153-385 (391)
461 KOG0046 Ca2+-binding actin-bun 96.6 0.0066 1.4E-07 62.0 7.6 73 48-127 10-85 (627)
462 KOG0463 GTP-binding protein GP 96.5 0.021 4.7E-07 56.2 10.4 154 283-443 132-351 (641)
463 KOG0036 Predicted mitochondria 96.5 0.005 1.1E-07 61.2 6.2 96 55-157 80-178 (463)
464 PRK00098 GTPase RsgA; Reviewed 96.5 0.005 1.1E-07 60.9 6.3 24 286-309 166-189 (298)
465 cd00051 EFh EF-hand, calcium b 96.5 0.0011 2.4E-08 47.9 1.1 59 137-203 2-62 (63)
466 PRK10416 signal recognition pa 96.5 0.032 6.9E-07 55.6 11.7 144 283-441 113-301 (318)
467 PRK12309 transaldolase/EF-hand 96.4 0.0064 1.4E-07 61.9 6.3 53 55-126 332-384 (391)
468 COG3523 IcmF Type VI protein s 96.4 0.0064 1.4E-07 69.5 6.8 137 265-408 106-270 (1188)
469 KOG4273 Uncharacterized conser 96.3 0.014 3E-07 54.3 7.6 118 284-412 4-127 (418)
470 TIGR00064 ftsY signal recognit 96.3 0.065 1.4E-06 52.2 12.8 94 333-441 155-259 (272)
471 cd01854 YjeQ_engC YjeQ/EngC. 96.3 0.0092 2E-07 58.7 6.8 25 285-309 162-186 (287)
472 PRK14974 cell division protein 96.3 0.065 1.4E-06 53.7 12.8 93 334-442 224-322 (336)
473 COG1161 Predicted GTPases [Gen 96.3 0.009 2E-07 59.7 6.6 114 353-476 29-157 (322)
474 KOG2484 GTPase [General functi 96.3 0.014 3.1E-07 58.1 7.7 75 353-435 141-217 (435)
475 KOG0377 Protein serine/threoni 96.3 0.012 2.6E-07 58.8 7.2 65 57-126 547-614 (631)
476 KOG2484 GTPase [General functi 96.3 0.0035 7.7E-08 62.3 3.4 60 280-343 248-307 (435)
477 TIGR02475 CobW cobalamin biosy 96.2 0.079 1.7E-06 53.4 13.0 23 285-307 5-27 (341)
478 cd03115 SRP The signal recogni 96.2 0.11 2.5E-06 46.7 13.0 81 333-426 83-168 (173)
479 PRK14722 flhF flagellar biosyn 96.2 0.036 7.8E-07 56.2 10.3 143 284-432 137-315 (374)
480 cd05030 calgranulins Calgranul 96.1 0.0042 9.1E-08 49.4 2.8 63 136-205 9-79 (88)
481 KOG3887 Predicted small GTPase 96.1 0.021 4.6E-07 53.1 7.3 160 285-450 28-202 (347)
482 cd03222 ABC_RNaseL_inhibitor T 96.0 0.074 1.6E-06 48.3 10.8 27 282-308 23-49 (177)
483 KOG2485 Conserved ATP/GTP bind 96.0 0.0095 2.1E-07 57.6 4.9 64 279-343 138-206 (335)
484 smart00054 EFh EF-hand, calciu 95.8 0.0094 2E-07 35.3 2.7 27 58-84 1-27 (29)
485 KOG4251 Calcium binding protei 95.8 0.072 1.6E-06 49.3 9.3 143 60-210 143-312 (362)
486 PF13207 AAA_17: AAA domain; P 95.7 0.0076 1.6E-07 50.7 2.9 22 286-307 1-22 (121)
487 KOG2423 Nucleolar GTPase [Gene 95.7 0.0041 8.8E-08 61.6 1.2 59 280-342 303-361 (572)
488 COG1116 TauB ABC-type nitrate/ 95.7 0.0076 1.6E-07 56.8 2.7 23 286-308 31-53 (248)
489 PF13833 EF-hand_8: EF-hand do 95.7 0.0073 1.6E-07 43.0 2.0 28 177-204 25-52 (54)
490 KOG1424 Predicted GTP-binding 95.6 0.019 4.2E-07 59.0 5.7 79 345-435 164-244 (562)
491 cd02038 FleN-like FleN is a me 95.4 0.098 2.1E-06 45.4 8.8 103 288-407 4-110 (139)
492 PRK08118 topology modulation p 95.3 0.012 2.7E-07 52.9 2.9 23 285-307 2-24 (167)
493 PRK07261 topology modulation p 95.3 0.013 2.9E-07 52.9 2.9 22 286-307 2-23 (171)
494 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.13 2.9E-06 44.9 9.1 24 285-308 27-50 (144)
495 PF13521 AAA_28: AAA domain; P 95.2 0.012 2.7E-07 52.5 2.5 22 286-307 1-22 (163)
496 PF13555 AAA_29: P-loop contai 95.2 0.017 3.6E-07 42.4 2.7 21 286-306 25-45 (62)
497 PRK00771 signal recognition pa 95.2 0.067 1.5E-06 55.6 8.0 80 334-426 177-261 (437)
498 COG0563 Adk Adenylate kinase a 95.1 0.013 2.8E-07 53.3 2.4 22 286-307 2-23 (178)
499 PF13671 AAA_33: AAA domain; P 95.1 0.014 3.1E-07 50.6 2.6 21 287-307 2-22 (143)
500 cd03216 ABC_Carb_Monos_I This 95.1 0.25 5.3E-06 44.2 10.7 27 282-308 24-50 (163)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=9.3e-93 Score=708.24 Aligned_cols=480 Identities=55% Similarity=0.907 Sum_probs=441.7
Q ss_pred ChhhhhccchhhheeeecccccCChhHHHHHhhhccccCCCcccccccCcchHHHHHHHHHhHhhhcCCCCCccCHHHHH
Q 010673 1 MGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELN 80 (504)
Q Consensus 1 ~~~~~~~~~~~~~~~~csa~~~~~~~~~~~~~~~~~~~p~~pl~~~~~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~ 80 (504)
|+|||++|+|||+||||||+++.|++|+||||||||+||+.||||++.++|++.|++||+|||++||.|+||.+|+.||+
T Consensus 139 ~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln 218 (625)
T KOG1707|consen 139 TLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELN 218 (625)
T ss_pred HHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CC
Q 010673 81 EFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PV 159 (504)
Q Consensus 81 ~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~ 159 (504)
.||++||+.+++..+++.++..+...+|+|+.+.++++.|||.|+..|+++|++|++|.++|+|+|++++.+++++| |
T Consensus 219 ~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p- 297 (625)
T KOG1707|consen 219 DFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPP- 297 (625)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCc-
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCCCHHHHhhhhccCCCCCCCCCccccccccccCCcccHHHHHHhhhh
Q 010673 160 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL 239 (504)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~~p~~p~~~~~~~~~~~~~~~g~i~~~~~l~~w~~ 239 (504)
.++++++++++|++.+++|+..+|..||.|+||.|+.+||..+|+++|..||....+++.++.+..||++++|||++|++
T Consensus 298 ~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 298 RLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred cccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhcCCCC---hHHHHHHhhhhhhhhhhhcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCC
Q 010673 240 MTLLDPRHSLANLIYVGYGGD---PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT 316 (504)
Q Consensus 240 ~~~~~~~~~~~~l~~lg~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T 316 (504)
+|++|+.++++||+|+||+.+ +.+++.++|+|..++++++..|++++|.|+|+.++|||.|++.|+++.+...+.++
T Consensus 378 ~Tlld~~~t~~~L~Ylgf~~~~~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~ 457 (625)
T KOG1707|consen 378 MTLLDPRRTLEYLAYLGFPTDAGSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGT 457 (625)
T ss_pred HhhccHHHHHHHHHhcCCcccccccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccC
Confidence 999999999999999999977 78999999999999999999999999999999999999999999999998877788
Q ss_pred ccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc
Q 010673 317 TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP 396 (504)
Q Consensus 317 ~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p 396 (504)
+...+.++.+... |..+++++.+++.. ...+....+ ..||+++++||++++.||..+...++.... ....|
T Consensus 458 ~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~-----~~~~P 528 (625)
T KOG1707|consen 458 TKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFD-----LYKIP 528 (625)
T ss_pred CCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhh-----ccCCc
Confidence 8888999999998 88999999999875 333333333 789999999999999999998777666543 35899
Q ss_pred EEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHhCCCCCCCCcccccchhhHHhhhcc
Q 010673 397 CLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNS 474 (504)
Q Consensus 397 iilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 474 (504)
|++|++|+|+.+..+... +..++|.++++++++.+|+++ .. .++|..|+..+..|+ .++.+...+. +.++
T Consensus 529 c~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph--~~~~~~~~~~-----~~~~ 600 (625)
T KOG1707|consen 529 CLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH--IPRIEEEKSS-----LQNR 600 (625)
T ss_pred eEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC--ccccccccch-----hhHH
Confidence 999999999988776544 569999999999999999997 55 999999999999999 6666655544 4567
Q ss_pred hhhhhhhhhHHHHhHHHHHHHHHhh
Q 010673 475 SLVFVSVGAAVAVVGLAAYRAYAAR 499 (504)
Q Consensus 475 ~~~~~~~g~~v~~~~~~~~~~~~~~ 499 (504)
....++.| ++.++|.+.+..++.+
T Consensus 601 ~l~~~~~g-~~~~~g~~~~~~~~~~ 624 (625)
T KOG1707|consen 601 LLMAVSGG-AVAVAGLALYKLYKAR 624 (625)
T ss_pred HHHHHHHH-HHHHhhHHHHhhhhcc
Confidence 76777777 7777777777766543
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-30 Score=226.05 Aligned_cols=168 Identities=25% Similarity=0.408 Sum_probs=155.1
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
....+||+++|++|||||+|+.||.+..|.+.+..|++.++..+++++++...++.+||++|+++++.+. ..++++|+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit--~syYR~ah 83 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH 83 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhh--HhhccCCC
Confidence 3567999999999999999999999999999999999999999999999777788899999999999886 67999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
+||+|||+++.+||..+..|+.++.++. ..++|.++||||+|+.+.+++.. +++.|+..++++.++++|||+ .|+
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~---~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYA---SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhc---cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 9999999999999999999999999884 45789999999999999888866 889999999998899999999 999
Q ss_pred HHHHHHHHHHHhCCC
Q 010673 439 NNVFSRIIWAAEHPH 453 (504)
Q Consensus 439 ~el~~~l~~~~~~~~ 453 (504)
++.|..|...+....
T Consensus 161 e~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999875443
No 3
>PRK11058 GTPase HflX; Provisional
Probab=99.96 E-value=4.3e-29 Score=255.90 Aligned_cols=294 Identities=17% Similarity=0.183 Sum_probs=208.1
Q ss_pred HHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 126 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
+.|+++|+.+++.+..+..+. +..|.+++| | .+.++++.......... ..+++||++++++++|+||+ |+++|-
T Consensus 55 ~~~~g~gk~~e~~~~~~~~~~--~~vi~~~~lsp-~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqv-elA~l~ 130 (426)
T PRK11058 55 KYFVGEGKAVEIAEAVKATGA--SVVLFDHALSP-AQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQV-ELAQLR 130 (426)
T ss_pred CeeecccHHHHHHHHHHhcCC--CEEEECCCCCH-HHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHH-HHHhhh
Confidence 367889999999999999877 789999999 9 88888776444433333 89999999999999999999 999999
Q ss_pred ccCCCCC--CCCCccccccccccCCcccHHHHHHhhhhhhccCHHHH--HHHHHHhcCCCChHHHHHHhhhhhhhhhhhc
Q 010673 204 LTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHS--LANLIYVGYGGDPAAALRVTRKRSVDRKKQQ 279 (504)
Q Consensus 204 ~~~p~~p--~~~~~~~~~~~~~~~g~i~~~~~l~~w~~~~~~~~~~~--~~~l~~lg~~~~~~~~l~~~~~~~~~~~~~~ 279 (504)
|..|++. |.+.. ..+|+++..|. +++.++..+. ..++.. ....++.....+...+..+
T Consensus 131 y~~prl~~~~~~l~-------~~~gg~g~~g~-----ge~~~e~d~r~i~~ri~~------l~~~L~~~~~~r~~~r~~r 192 (426)
T PRK11058 131 HLATRLVRGWTHLE-------RQKGGIGLRGP-----GETQLETDRRLLRNRIVQ------ILSRLERVEKQREQGRRAR 192 (426)
T ss_pred hhhhhhhccccchh-------hhcCCCCCCCC-----ChhHhHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHh
Confidence 9999986 76543 24566665555 7776665443 455555 2444454444433333333
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC-CCccceEEEEEEEcCCCcEEEEEEecCChhh------Hhhhhhh
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSN 352 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~-~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~------~~~~~~~ 352 (504)
...+.++|+++|.+|||||||+|+|++.++..... .++.+ .....+.+. +.....+||++|... ...+..+
T Consensus 193 ~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld-~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~t 270 (426)
T PRK11058 193 IKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLD-PTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKAT 270 (426)
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcC-CceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHH
Confidence 33455799999999999999999999987654333 33333 344456666 334567899998622 1234445
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEe
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
...+..||++++|+|++++.++..+..|...+.... ..++|+++|+||+|+...... ... ....+.+.++++|
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~---~~~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~IS 343 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID---AHEIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLS 343 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc---cCCCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEe
Confidence 667899999999999999988877654444443321 237899999999999653211 111 1123444358999
Q ss_pred ccc-cCHHHHHHHHHHHHh
Q 010673 433 MKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~ 450 (504)
|++ .|++++++.|.+.+.
T Consensus 344 AktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 999 999999999998874
No 4
>COG2262 HflX GTPases [General function prediction only]
Probab=99.96 E-value=9.6e-29 Score=241.48 Aligned_cols=294 Identities=21% Similarity=0.255 Sum_probs=223.2
Q ss_pred HHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 126 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
+.|++.|+.+++..+.+..+. +..|.+++| | .+.+|++.......... +.+++||.+++++++|+||+ |+++|-
T Consensus 50 ~~~iG~GK~eEi~~~v~~~~a--d~VIf~~~LsP-~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQV-eLAqL~ 125 (411)
T COG2262 50 KTYIGSGKLEEIAEAVEETGA--DLVIFDHELSP-SQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQV-ELAQLR 125 (411)
T ss_pred ceecCcchHHHHHHHHHhcCC--CEEEECCcCCH-HHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhh-hHHhhh
Confidence 468899999999999999987 899999999 9 88888776333333333 89999999999999999999 999999
Q ss_pred ccCCCCC--CCCCccccccccccCCcccHHHHHHhhhhhhccCHHHH--HHHHHHhcCCCChHHHHHHhhhhhhhhhhhc
Q 010673 204 LTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHS--LANLIYVGYGGDPAAALRVTRKRSVDRKKQQ 279 (504)
Q Consensus 204 ~~~p~~p--~~~~~~~~~~~~~~~g~i~~~~~l~~w~~~~~~~~~~~--~~~l~~lg~~~~~~~~l~~~~~~~~~~~~~~ 279 (504)
|..|++. |...+ ..+|+++..|. +++.++..++ ..++.. ....++.+++++..+++++
T Consensus 126 Y~lpRl~~~~~~l~-------~~GggiG~rGp-----GE~~lE~drR~ir~rI~~------i~~eLe~v~~~R~~~R~~R 187 (411)
T COG2262 126 YELPRLVGSGSHLS-------RLGGGIGFRGP-----GETQLETDRRRIRRRIAK------LKRELENVEKAREPRRKKR 187 (411)
T ss_pred hhhhHhHhhhhhcc-------cccCCCCCCCC-----CchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhh
Confidence 9999988 66543 34477887776 7777776554 355566 4677888888888888888
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC--CCccceEEEEEEEcCCCcEEEE-----EEecCChhhHhhhhhh
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTL-----ILQEIPEEGVKKILSN 352 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~--~T~~~~~~~~~v~~~~~~~~~l-----i~d~~g~~~~~~~~~~ 352 (504)
...+.+.|.++|.+|+|||||+|+|++........ .|... ..+.+.+++|...++ ++++.|+....++.++
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdp--ttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDP--TTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccC--ceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 88899999999999999999999999876543221 12222 223467775544433 3666677777888889
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEe
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
.+....||++++|+|+|+|...+.+.....-+.+.. ..++|+|+|.||+|+..+... ...+.... +.++.+|
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~---~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~--~~~v~iS 337 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG---ADEIPIILVLNKIDLLEDEEI---LAELERGS--PNPVFIS 337 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC---CCCCCEEEEEecccccCchhh---hhhhhhcC--CCeEEEE
Confidence 999999999999999999976666555444444432 347999999999998765431 11222222 2489999
Q ss_pred ccc-cCHHHHHHHHHHHHhC
Q 010673 433 MKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~~ 451 (504)
|++ .|++.|++.|.+.+..
T Consensus 338 A~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 338 AKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred eccCcCHHHHHHHHHHHhhh
Confidence 999 9999999999998753
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.1e-28 Score=211.13 Aligned_cols=168 Identities=21% Similarity=0.355 Sum_probs=152.9
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
.-+.+|++++|+.+|||||||+||+.+.|...|.+|++.+|..+++.+.+....+.+||++|+++++.+. ..|+++++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli--psY~Rds~ 96 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSS 96 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--hhhccCCe
Confidence 3455999999999999999999999999999999999999999999999777778899999999999998 66999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
++|+|||+++..||++..+|++.+..... ..++-+++||||.||.++++... +.+..|++++.. |+++||+. .||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~g--s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERG--SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccC--CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCH
Confidence 99999999999999999999999987743 33578899999999999988866 888999999996 99999999 999
Q ss_pred HHHHHHHHHHHhCCC
Q 010673 439 NNVFSRIIWAAEHPH 453 (504)
Q Consensus 439 ~el~~~l~~~~~~~~ 453 (504)
.++|..|...+..+.
T Consensus 174 k~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 174 KQLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHHhccCcc
Confidence 999999998886653
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=212.60 Aligned_cols=166 Identities=23% Similarity=0.346 Sum_probs=150.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|+.+||||||+-||..+.|.+...+|++..|..+.+.+++...++.+||++|++++.++. .-|+++|++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla--pMYyRgA~A 80 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA--PMYYRGANA 80 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc--cceecCCcE
Confidence 346899999999999999999999999999888999999999999999777788899999999999987 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|+|||+++.+||..++.|+.++.+.. .+++-+.+||||+|+.+.+++. ++++.+|+..++. ++++|||+ .||+
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~---~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQA---SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENVN 156 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhC---CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCHH
Confidence 999999999999999999999998763 3467778899999999976665 4999999999998 99999999 9999
Q ss_pred HHHHHHHHHHhCCC
Q 010673 440 NVFSRIIWAAEHPH 453 (504)
Q Consensus 440 el~~~l~~~~~~~~ 453 (504)
++|..|.+.+....
T Consensus 157 ~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHHhccCcc
Confidence 99999999885443
No 7
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.7e-28 Score=215.05 Aligned_cols=167 Identities=20% Similarity=0.329 Sum_probs=154.7
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
.....+||+++|++|||||+|+.+|..+.|...+..|++.++..+++.+++......+||++|++++..+. ..|++.|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~--~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH--HHHHhhc
Confidence 35678999999999999999999999999999999999999999999999777778899999999999887 5699999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cC
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~g 437 (504)
+++++|||+++..||+++..|+..+.++. ..++|+++||||+|+...+++.. ..+++|..+|+. ++|+|||+ .|
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a---~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~N 161 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHA---SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNFN 161 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhC---CCCCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCCC
Confidence 99999999999999999999999999884 34899999999999999888765 999999999998 99999999 99
Q ss_pred HHHHHHHHHHHHhCC
Q 010673 438 LNNVFSRIIWAAEHP 452 (504)
Q Consensus 438 i~el~~~l~~~~~~~ 452 (504)
|++.|-.|++.+..+
T Consensus 162 I~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 162 IEEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988753
No 8
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.96 E-value=2.4e-28 Score=245.04 Aligned_cols=290 Identities=21% Similarity=0.256 Sum_probs=205.3
Q ss_pred HHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 126 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
+.|+++|+.+++.+..+..+. +..|.+++| | .+.++++....+..... ..+++||++++++++|+|+. ++++|-
T Consensus 47 ~~~~g~gk~~e~~~~~~~~~~--~~vi~~~~l~p-~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv-~la~l~ 122 (351)
T TIGR03156 47 ATYIGKGKVEEIAELVEELEA--DLVIFDHELSP-SQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQV-ELAQLK 122 (351)
T ss_pred CeEecccHHHHHHHHHHhcCC--CEEEECCCCCH-HHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHH-HHHhcc
Confidence 367889999999999999988 689999999 9 88888877554544444 89999999999999999999 999999
Q ss_pred ccCCCCC--CCCCccccccccccCCcccHHHHHHhhhhhh--ccCHHHHHHHHHHhcCCCChHHHHHHhhhhhhhhhhhc
Q 010673 204 LTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMT--LLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQ 279 (504)
Q Consensus 204 ~~~p~~p--~~~~~~~~~~~~~~~g~i~~~~~l~~w~~~~--~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~~~~~~~ 279 (504)
+..|+.- |.+.. ...|++...|. .++ ..+......++.. ....++..+.++...+..+
T Consensus 123 ~~l~r~~~~~~~l~-------~~~~~i~~~g~-----gE~~~~~~~~~i~~ri~~------l~~~L~~~~~~~~~~r~~r 184 (351)
T TIGR03156 123 YLLPRLVGGWTHLS-------RQGGGIGTRGP-----GETQLETDRRLIRERIAQ------LKKELEKVEKQRERQRRRR 184 (351)
T ss_pred chhhhhhhhHHHHH-------hhcCCCCCCCC-----ChhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh
Confidence 9999875 55432 23345544322 322 2222333344444 2445555555554444444
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCcEEEEEEecCChhh------Hhhhhhh
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSN 352 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~------~~~~~~~ 352 (504)
...+.++|+++|.+|||||||+|+|++..+.... ..+|.+ .....+.++++ ..+.+||++|... ...+..+
T Consensus 185 ~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d-~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t 262 (351)
T TIGR03156 185 KRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLD-PTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT 262 (351)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccC-CEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH
Confidence 4457799999999999999999999998754333 234433 34556777634 4678899998621 1334445
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEe
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
...+.+||++++|+|++++.+++.+..|...+.... ..++|+++|+||+|+..... ...+.. +.++++++|
T Consensus 263 le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~---~~~~piIlV~NK~Dl~~~~~----v~~~~~--~~~~~i~iS 333 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG---AEDIPQLLVYNKIDLLDEPR----IERLEE--GYPEAVFVS 333 (351)
T ss_pred HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc---cCCCCEEEEEEeecCCChHh----HHHHHh--CCCCEEEEE
Confidence 567899999999999999988877766655555431 23789999999999975322 111211 223489999
Q ss_pred ccc-cCHHHHHHHHHHH
Q 010673 433 MKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~ 448 (504)
|++ .|++++++.|.+.
T Consensus 334 Aktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 334 AKTGEGLDLLLEAIAER 350 (351)
T ss_pred ccCCCCHHHHHHHHHhh
Confidence 999 9999999998764
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=206.67 Aligned_cols=171 Identities=18% Similarity=0.299 Sum_probs=151.2
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
.+..+||+++|++|||||||+|++.+++|...+..|++.++..+.+.+++....+.+||++|++++.++. ..+++.+|
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--~aFYRgaD 83 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--VAFYRGAD 83 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--cceecCCc
Confidence 4678999999999999999999999999999999999999999999999555566789999999999887 56999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccC-CCCCCcEEEEEECCCCCCC--ccchH-HHHHHHHHhCCCCeEEEeccc-
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPY--TMAVQ-DSARVTQELGIEPPIPVSMKS- 435 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~--~~~~~-~~~~~~~~~~~~~~~~vSak~- 435 (504)
++++|||++++.||+.+..|.+++..+... ....-|.|++|||+|+... ++++. .++.||+..+-.+|+++|||.
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 999999999999999999999999877542 2356899999999999762 45544 899999999977899999999
Q ss_pred cCHHHHHHHHHHHHhCCC
Q 010673 436 KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~~~ 453 (504)
.||++.|+.+.+.+....
T Consensus 164 ~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANE 181 (210)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 999999999999876543
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2e-27 Score=200.66 Aligned_cols=165 Identities=19% Similarity=0.283 Sum_probs=150.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|.+|||||||+.+|+.+.|....+.|++.+|.++.+.+++...++-+||++|+++++.+. ..|++.|.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT--pSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT--PSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC--HhHhccCce
Confidence 456999999999999999999999999998887889999999999999777788899999999999886 679999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|+|||++.+++|..+..|++++..+.. .+++-.++|+||+|...++.+.. +...||+++++. ++++|||+ +|++
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTRENVQ 163 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhccHH
Confidence 9999999999999999999999988753 45677889999999987777655 899999999998 99999999 9999
Q ss_pred HHHHHHHHHHhC
Q 010673 440 NVFSRIIWAAEH 451 (504)
Q Consensus 440 el~~~l~~~~~~ 451 (504)
..|+.++..+.+
T Consensus 164 ~~FeelveKIi~ 175 (209)
T KOG0080|consen 164 CCFEELVEKIIE 175 (209)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=9.7e-28 Score=199.65 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=150.7
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
+.++.+|+|++|||||||+.+|....|...|..|++.++.++++++++....+.+||++|+++++.+.. .+++..+++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtits--tyyrgthgv 84 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITS--TYYRGTHGV 84 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHH--HHccCCceE
Confidence 456789999999999999999999999999999999999999999997777888999999999999974 499999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
|+|||+++.+||.++.+|++++..+ .+.+|-++||||.|.++.+.+.. +++.|+...++. +|++|||. .|++.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~n----cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNN----CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVEA 159 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhc----CccccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccchH
Confidence 9999999999999999999999987 56899999999999998887755 999999999998 99999999 99999
Q ss_pred HHHHHHHHHhCCC
Q 010673 441 VFSRIIWAAEHPH 453 (504)
Q Consensus 441 l~~~l~~~~~~~~ 453 (504)
+|..|.++.....
T Consensus 160 mF~cit~qvl~~k 172 (198)
T KOG0079|consen 160 MFHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998875443
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=1.5e-26 Score=213.07 Aligned_cols=169 Identities=18% Similarity=0.271 Sum_probs=145.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|..|||||||+++|.++.+...+.+|.+..+....+.+++....+.+||++|++.+..++ ..+++.+|+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~--~~~~~~ad~ 81 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF--RSYSRGAQG 81 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhcCCCE
Confidence 356899999999999999999999998887777888887877778877545566789999998888877 468899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|+|||++++.||+.+..|+.++... .++.|+++||||+|+...+.+. ++++.+++.++++ +++|||++ .||+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~----~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V~ 156 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEH----APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNIT 156 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence 99999999999999999999999776 4589999999999997765554 4899999999986 99999999 9999
Q ss_pred HHHHHHHHHHhCCCCCCC
Q 010673 440 NVFSRIIWAAEHPHLNIP 457 (504)
Q Consensus 440 el~~~l~~~~~~~~~~~~ 457 (504)
++|++|++.+...+...|
T Consensus 157 ~~F~~l~~~i~~~~~~~~ 174 (189)
T cd04121 157 ESFTELARIVLMRHGRPP 174 (189)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999998765544333
No 13
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-27 Score=203.83 Aligned_cols=163 Identities=19% Similarity=0.307 Sum_probs=150.9
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+|++++|+.|||||+|+.+|+.+.|...+..|++.++..+.+.+++.+.++.+||+.|++.+.++. ..+++.|.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~--~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT--RSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH--HHHhccCcc
Confidence 357899999999999999999999999999999999999999999999777888899999999999997 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|+|||+++++||..+..|+.+++.+. .++..++++|||+||...+.+.+ +.+.||+++++. +.++||++ .|++
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~---~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~VE 157 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHS---NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAENVE 157 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhc---CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhhHH
Confidence 999999999999999999999999873 36899999999999999888766 999999999998 89999999 9999
Q ss_pred HHHHHHHHHHh
Q 010673 440 NVFSRIIWAAE 450 (504)
Q Consensus 440 el~~~l~~~~~ 450 (504)
|.|......+.
T Consensus 158 EaF~nta~~Iy 168 (216)
T KOG0098|consen 158 EAFINTAKEIY 168 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999888763
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=1.5e-26 Score=210.61 Aligned_cols=161 Identities=19% Similarity=0.371 Sum_probs=138.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+.+|+.+.|...+.||.+..+. ..+.+++....+.+||++|++.+..+. ..+++++|++|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR--PLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccc--hhhcCCCcEEEE
Confidence 68999999999999999999999998888899987664 446677555667789999998888776 458899999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-----------cchHHHHHHHHHhCCCCeEEEe
Q 010673 365 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 365 V~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS 432 (504)
|||++++.||+.+ ..|+..+... .+++|+++||||+|+.+.+ ...++..++++.++...+++||
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 154 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHY----APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS 154 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999998 6899999766 3589999999999996643 2344889999999985599999
Q ss_pred ccc-cCHHHHHHHHHHHHhCC
Q 010673 433 MKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~~~ 452 (504)
|++ .||+++|+.+++.+.+|
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred CCcccCHHHHHHHHHHHHhcC
Confidence 999 99999999999987655
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=3.4e-26 Score=212.69 Aligned_cols=161 Identities=17% Similarity=0.318 Sum_probs=139.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
++|+++|.+|||||||+++|..+.|...+.+|++..+..+.+.+++....+.+||++|++.+..++ ..+++++|++|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~--~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH--HHHhcCCCEEEE
Confidence 369999999999999999999999988888999888888888888545667789999999888887 468999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHh-CCCCeEEEeccc-cCHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQEL-GIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~-~~~~~~~vSak~-~gi~el 441 (504)
|||+++++||+.+..|+..+.... ..++|+++||||+|+...+++.. +.+++++++ ++. +++|||++ .||+++
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~---~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etSAktg~gV~e~ 154 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEASAKDNFNVDEI 154 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEecCCCCCCHHHH
Confidence 999999999999999999887652 35799999999999976665544 778888886 665 99999999 999999
Q ss_pred HHHHHHHHhC
Q 010673 442 FSRIIWAAEH 451 (504)
Q Consensus 442 ~~~l~~~~~~ 451 (504)
|++|++.+..
T Consensus 155 F~~l~~~~~~ 164 (202)
T cd04120 155 FLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=1.1e-25 Score=206.26 Aligned_cols=162 Identities=20% Similarity=0.281 Sum_probs=137.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|++|||||||+++|..+.+...+.||.+..+. +.+.+++....+.+||++|++.+..+. ..+++++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~--~~~~~~ad~ 79 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA 79 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhh--hhhcCCCCE
Confidence 34689999999999999999999999998888899987664 457777555667789999998888776 458899999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCC------------ccc-hHHHHHHHHHhCCCC
Q 010673 362 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY------------TMA-VQDSARVTQELGIEP 427 (504)
Q Consensus 362 iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~~ 427 (504)
+|+|||++++.||+.+ ..|+..+... .++.|+++||||+|+... +.+ .++++++|+++++.+
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~----~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEF----CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH----CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999997 7999999876 457999999999998641 223 458999999999745
Q ss_pred eEEEeccc-cC-HHHHHHHHHHHHh
Q 010673 428 PIPVSMKS-KD-LNNVFSRIIWAAE 450 (504)
Q Consensus 428 ~~~vSak~-~g-i~el~~~l~~~~~ 450 (504)
+++|||++ .| |+++|+.+++.+.
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHh
Confidence 99999999 88 9999999998654
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.6e-25 Score=211.66 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=139.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..+||+++|++|||||||+++|+++.|...+.||++..+.. .+.+++....+.+||++|++.+..+. ..+++++|++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~--~~~~~~ad~v 88 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSDAV 88 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHH--HHHcCCCcEE
Confidence 46799999999999999999999999998899999877654 47777556667789999998888776 4588999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCC------------ccc-hHHHHHHHHHhCCCCe
Q 010673 363 IFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY------------TMA-VQDSARVTQELGIEPP 428 (504)
Q Consensus 363 ilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~~~ 428 (504)
|+|||++++.||+.+ ..|+..+... .++.|+++||||+|+... +.+ .++++++|+++++..|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~----~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDY----CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHh----CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 999999999999984 8999999876 457899999999998642 223 4489999999998559
Q ss_pred EEEeccc-c-CHHHHHHHHHHHHhCC
Q 010673 429 IPVSMKS-K-DLNNVFSRIIWAAEHP 452 (504)
Q Consensus 429 ~~vSak~-~-gi~el~~~l~~~~~~~ 452 (504)
++|||++ . ||+++|..++..+...
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999999 7 8999999999987653
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=2.1e-25 Score=203.95 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=134.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|.++.+...+.||.+..+. +.+.+++....+.+||++|++.+..+. ..+++.+|++|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVR--PLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcc--hhhcCCCCEEEE
Confidence 68999999999999999999999998888899887664 457777555566789999998887765 458899999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCC------------c-cchHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPY------------T-MAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~-~~~~~~~~~~~~~~~~~~~~ 430 (504)
|||++++.||+.+ ..|+..+.+. .++.|+++||||+|+... + ...++++++++++++.++++
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~----~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEF----CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHH----CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 9999999999996 7999999876 458999999999999641 1 23458999999999755999
Q ss_pred Eeccc-cC-HHHHHHHHHHHHh
Q 010673 431 VSMKS-KD-LNNVFSRIIWAAE 450 (504)
Q Consensus 431 vSak~-~g-i~el~~~l~~~~~ 450 (504)
|||++ .| |+++|..+++.+.
T Consensus 155 ~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CccCcCCcCHHHHHHHHHHHHh
Confidence 99999 84 9999999998643
No 19
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=3.2e-25 Score=200.52 Aligned_cols=161 Identities=19% Similarity=0.353 Sum_probs=138.6
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+++|++|||||||+++|.++.+...+.+|++.++....+.+.+....+.+||++|++.+..++ ..+++++|++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT--RSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEEE
Confidence 4799999999999999999999999988888888888877777777445566789999988887776 45889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.||+.+..|+..+.... .++.|+++|+||+|+...+... +++.++++..+++ ++++||++ .|++++
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLT---NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA 155 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 9999999999999999999886652 3478999999999998766554 4888899988886 99999999 999999
Q ss_pred HHHHHHHHh
Q 010673 442 FSRIIWAAE 450 (504)
Q Consensus 442 ~~~l~~~~~ 450 (504)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (166)
T cd04122 156 FLETAKKIY 164 (166)
T ss_pred HHHHHHHHh
Confidence 999988764
No 20
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.8e-25 Score=202.78 Aligned_cols=166 Identities=36% Similarity=0.581 Sum_probs=134.9
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCC-CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~-~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
.|+++||+++|.+|||||||+++|+++.+. ..+.||++..+..+.+.+++....+.+||..|++.+..+. ..+++++
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~ 78 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN--DAELAAC 78 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc--hhhhhcC
Confidence 378999999999999999999999999998 7888999988877778887433344556666665555544 4577999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cC
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~g 437 (504)
|++++|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+..... ...+++++.+++..++++||++ .|
T Consensus 79 d~~llv~d~~~~~s~~~~~~~~~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKKYFM-----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhcc-----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 999999999999999998888886642 2379999999999997544332 3567888888886679999999 99
Q ss_pred HHHHHHHHHHHHhCCC
Q 010673 438 LNNVFSRIIWAAEHPH 453 (504)
Q Consensus 438 i~el~~~l~~~~~~~~ 453 (504)
++++|+.|++.+..||
T Consensus 154 v~~lf~~l~~~~~~~~ 169 (169)
T cd01892 154 SNELFTKLATAAQYPH 169 (169)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999887553
No 21
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-25 Score=200.26 Aligned_cols=164 Identities=21% Similarity=0.323 Sum_probs=151.1
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
.....|||+++|+++||||-|+.||+.++|...+.+|++.++..+.+.+++...+..+||++|+++++.+. ..+++.|
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit--SaYYrgA 87 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT--SAYYRGA 87 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc--chhhccc
Confidence 35678999999999999999999999999999999999999999999999777778899999999999887 5699999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cC
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~g 437 (504)
-++++|||++...+|+++..|+.+++.+. .+++++++||||+||...+.++. +.+.+++..++. ++++||.. .|
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdha---d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~tN 163 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHA---DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDATN 163 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcC---CCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEeccccccc
Confidence 99999999999999999999999999884 46999999999999998776655 899999999997 99999999 99
Q ss_pred HHHHHHHHHHHH
Q 010673 438 LNNVFSRIIWAA 449 (504)
Q Consensus 438 i~el~~~l~~~~ 449 (504)
+++.|+.++..+
T Consensus 164 Ve~aF~~~l~~I 175 (222)
T KOG0087|consen 164 VEKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999999988776
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=3.9e-25 Score=201.22 Aligned_cols=162 Identities=16% Similarity=0.279 Sum_probs=136.9
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+|+|.+|||||||+++|.++.+...+.||.+..+. ..+.+++....+.+||++|.+.+..++ ..+++.+|++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMR--DQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHh--HHHhhcCCEEE
Confidence 479999999999999999999999998888888886554 346677445566789999998888877 45889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.||+.+..|+..+..... ..++|+++|+||+|+...+++.. +..++++.++++ +++|||++ .||+++
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYIDDA 155 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHHHH
Confidence 99999999999999988887766421 35799999999999977665544 788899999986 99999999 999999
Q ss_pred HHHHHHHHhC
Q 010673 442 FSRIIWAAEH 451 (504)
Q Consensus 442 ~~~l~~~~~~ 451 (504)
|++|++.+..
T Consensus 156 f~~l~~~~~~ 165 (172)
T cd04141 156 FHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.93 E-value=4.5e-25 Score=204.32 Aligned_cols=163 Identities=19% Similarity=0.335 Sum_probs=137.1
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+++|++|||||||+++|..+.|...+.||.+..+.. .+.+++....+.+||++|++.+..++ ..+++++|++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~e~~~~l~--~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAGQEEYDRLR--TLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCCchhhhhhh--hhhccCCCEEE
Confidence 4899999999999999999999999988888999876543 45666555667789999999988876 45889999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc-------------chHHHHHHHHHhCCCCeE
Q 010673 364 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-------------AVQDSARVTQELGIEPPI 429 (504)
Q Consensus 364 lV~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~ 429 (504)
+|||++++.||+.+. .|+..+... .+++|+++||||+|+.+... ..++.+++++.++..+++
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHH----CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999996 688877755 45899999999999965421 234788899999854599
Q ss_pred EEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 430 PVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 430 ~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
++||++ .||+++|+.|++.+..|.
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhccc
Confidence 999999 999999999999887764
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=6.1e-25 Score=205.19 Aligned_cols=166 Identities=17% Similarity=0.280 Sum_probs=139.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC-CCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~-~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+||+|+|++|||||||+++|+++.+...+.+|.+.++..+.+.++ +....+.+||++|.+.+..++ ..+++++|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT--RVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH--HHHhCCCCEEE
Confidence 589999999999999999999999988888999887777777776 445567789999998887776 56889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcc-CCCCCCcEEEEEECCCCCCCcc-chHHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~-~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
+|||++++.||+.+..|+..+..... ....++|+++|+||+|+...+. ..+++.++++.+++..++++||++ .|+++
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988865311 1135789999999999975333 345889999999955599999999 99999
Q ss_pred HHHHHHHHHhCC
Q 010673 441 VFSRIIWAAEHP 452 (504)
Q Consensus 441 l~~~l~~~~~~~ 452 (504)
+|++|++.+...
T Consensus 159 ~f~~l~~~l~~~ 170 (201)
T cd04107 159 AMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 25
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=7.5e-25 Score=201.06 Aligned_cols=166 Identities=18% Similarity=0.284 Sum_probs=137.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|+++.+...+.||.+.++..+.+.+++....+.+||++|++.+..++ ..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML--PLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh--HHHCcCCCEEEE
Confidence 589999999999999999999999988888999988877778888545567789999998887776 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC----c--cchHHHHHHHHHhCCCCeEEEeccc-cC
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY----T--MAVQDSARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~~~~vSak~-~g 437 (504)
|||++++.||+++..|+..+.... ....| ++|+||+|+... . ...++.+++++.++.+ ++++||++ .|
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~---~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~e~SAk~g~~ 153 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFN---KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP-LIFCSTSHSIN 153 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence 999999999999999999987652 23466 688999998521 1 1234677889998875 99999999 99
Q ss_pred HHHHHHHHHHHHhCCCCCCC
Q 010673 438 LNNVFSRIIWAAEHPHLNIP 457 (504)
Q Consensus 438 i~el~~~l~~~~~~~~~~~~ 457 (504)
++++|+++.+.+..-+...+
T Consensus 154 v~~lf~~l~~~l~~~~~~~~ 173 (182)
T cd04128 154 VQKIFKIVLAKAFDLPLTIP 173 (182)
T ss_pred HHHHHHHHHHHHHhcCCChh
Confidence 99999999998866444444
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=1.1e-24 Score=205.59 Aligned_cols=166 Identities=22% Similarity=0.312 Sum_probs=140.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCC-cEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~-~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+||+++|++|||||||+++|++..+...+.+|.+.++..+.+.++++ ...+.+||++|++.+..+. ..+++.+|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKML--DKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHH--HHHhhcCCEEE
Confidence 58999999999999999999999998888899988787777888643 4566789999987777776 45889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||+++++||+.+..|+..+.+.......++|+++|+||+|+...+... +....+++.++++ ++++||++ .|++++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~~l 157 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVNLL 157 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 99999999999999999999987632212357899999999997655444 4788899999886 89999999 999999
Q ss_pred HHHHHHHHhCCC
Q 010673 442 FSRIIWAAEHPH 453 (504)
Q Consensus 442 ~~~l~~~~~~~~ 453 (504)
|++|++.+....
T Consensus 158 f~~l~~~l~~~~ 169 (215)
T cd04109 158 FQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHhcc
Confidence 999999886543
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.3e-24 Score=196.76 Aligned_cols=161 Identities=22% Similarity=0.375 Sum_probs=138.5
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++....+.+||++|++.+..+. ..+++++|+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--~~~~~~ad~~i 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGAMGII 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhCCCCEEE
Confidence 5899999999999999999999999988888898887777778877544567789999988777665 46889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.. .++...+++.++.+ ++++||++ .|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVEEA 156 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 9999999999999999999987652 347899999999999865544 34778888888886 99999999 999999
Q ss_pred HHHHHHHHh
Q 010673 442 FSRIIWAAE 450 (504)
Q Consensus 442 ~~~l~~~~~ 450 (504)
|++|.+.+.
T Consensus 157 ~~~i~~~~~ 165 (167)
T cd01867 157 FFTLAKDIK 165 (167)
T ss_pred HHHHHHHHH
Confidence 999998764
No 28
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.4e-25 Score=184.68 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=147.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
-.+||+++|..|||||+|+++|+.+-|++....|++.++.++++++++.+.++.+||++|+++++++. ..+++.|+++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit--qsyyrsahal 83 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT--QSYYRSAHAL 83 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH--HHHhhhcceE
Confidence 46899999999999999999999999998888899999999999999888889999999999999997 6799999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
|+|||++...||+-+.+|+.++.++.+ .++--|+||||+|+.+.+++++ ..++|++....- ++++||+. +|++.
T Consensus 84 ilvydiscqpsfdclpewlreie~yan---~kvlkilvgnk~d~~drrevp~qigeefs~~qdmy-fletsakea~nve~ 159 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYAN---NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMY-FLETSAKEADNVEK 159 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhh---cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhh-hhhhcccchhhHHH
Confidence 999999999999999999999998842 3566789999999999888876 788898887775 89999999 99999
Q ss_pred HHHHHHHHHh
Q 010673 441 VFSRIIWAAE 450 (504)
Q Consensus 441 l~~~l~~~~~ 450 (504)
||..++..+.
T Consensus 160 lf~~~a~rli 169 (213)
T KOG0095|consen 160 LFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 29
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.2e-25 Score=183.82 Aligned_cols=164 Identities=19% Similarity=0.336 Sum_probs=148.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
.-.+|+.|+|++.||||||+.++++..|...+..|.+..+.++++--......+.+||+.|+++++.+. ..+++.+++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT--TayyRgamg 96 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT--TAYYRGAMG 96 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH--HHHhhccce
Confidence 456799999999999999999999999999888999999999987666566778899999999988886 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|+|||++|.+||..++.|..++..+. ..+.|+|+|+||||+.+++.+.. ....++.++|+. +|++|||. .|++
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktys---w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinVk 172 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYS---WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINVK 172 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeee---ccCceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccHH
Confidence 999999999999999999999998773 56899999999999999888754 899999999997 99999999 9999
Q ss_pred HHHHHHHHHHhC
Q 010673 440 NVFSRIIWAAEH 451 (504)
Q Consensus 440 el~~~l~~~~~~ 451 (504)
.+|+.+...+..
T Consensus 173 ~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 173 QVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999987743
No 30
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=1.9e-24 Score=195.27 Aligned_cols=160 Identities=19% Similarity=0.329 Sum_probs=135.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|.+..+...+.+|.+.++....+..++....+.+||++|.+.+..++ ..+++.+|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~--~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT--TAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHccCCcEEEE
Confidence 799999999999999999999999988888888877766666666444567789999988777766 568899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.. .+...++++.++++ ++++||++ .|++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQVF 155 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 999999999999999999987652 247899999999999776544 34777888888886 99999999 9999999
Q ss_pred HHHHHHHh
Q 010673 443 SRIIWAAE 450 (504)
Q Consensus 443 ~~l~~~~~ 450 (504)
++|.+.+.
T Consensus 156 ~~l~~~~~ 163 (165)
T cd01865 156 ERLVDIIC 163 (165)
T ss_pred HHHHHHHH
Confidence 99988753
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.4e-24 Score=195.45 Aligned_cols=158 Identities=23% Similarity=0.367 Sum_probs=135.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++++++.+...+.+|.+..+....+.+.+....+.+||++|.+.+..+. ..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT--KQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH--HHHhcCCcEEEE
Confidence 489999999999999999999999988888888887777778887434556689999988777765 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||+++++||+.+..|+..+.... ..+.|+++|+||+|+...+.+ .++...+++.++.+ ++++||++ .|++++|
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKESF 154 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 999999999999999999887652 247999999999999776654 34888899988876 99999999 9999999
Q ss_pred HHHHHH
Q 010673 443 SRIIWA 448 (504)
Q Consensus 443 ~~l~~~ 448 (504)
++|++.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999864
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=2.1e-24 Score=195.07 Aligned_cols=161 Identities=26% Similarity=0.423 Sum_probs=137.8
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+.+....+.+||++|++.+..+. ..+++.+|++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhCcCCEEE
Confidence 4799999999999999999999999888888888877777778777444567789999988777765 45789999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||+++++||..+..|+..+.... ..+.|+++|+||+|+....... +++..+++.++.+ ++++||++ .|++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVEQA 155 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC---CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHHHH
Confidence 9999999999999999999987652 2478999999999997665543 4788899998886 99999999 999999
Q ss_pred HHHHHHHHh
Q 010673 442 FSRIIWAAE 450 (504)
Q Consensus 442 ~~~l~~~~~ 450 (504)
|+.|++.+.
T Consensus 156 ~~~i~~~~~ 164 (166)
T cd01869 156 FMTMAREIK 164 (166)
T ss_pred HHHHHHHHH
Confidence 999998764
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=2.4e-24 Score=197.42 Aligned_cols=163 Identities=13% Similarity=0.248 Sum_probs=137.4
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC----------CCcEEEEEEecCChhhHhhhhhh
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN 352 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~----------~~~~~~li~d~~g~~~~~~~~~~ 352 (504)
..+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+. +....+.+||++|++.+..++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-- 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT-- 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH--
Confidence 45899999999999999999999999988888888877766655543 233566789999998877776
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEE
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPV 431 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~v 431 (504)
..+++++|++++|||+++++||..+..|+..+..... .++.|+++|+||+|+.+.+... ++..++++.++++ ++++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~ 157 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY--CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFET 157 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEE
Confidence 5588999999999999999999999999999876521 3478999999999998765544 4788999999986 9999
Q ss_pred eccc-cCHHHHHHHHHHHHh
Q 010673 432 SMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~~ 450 (504)
||++ .|++++|+.|.+.+.
T Consensus 158 Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 9999 999999999998764
No 34
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=1.7e-24 Score=194.72 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=132.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++++.+.+...+.||++..+ .+.+.+++....+.+||++|.+.+..++ ..+++.+|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDGQQCMLEILDTAGTEQFTAMR--DLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCccccchHH--HHHhhcCCEEEE
Confidence 7999999999999999999999998888888887544 4456777444556689999998887776 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|+.+..|+..+..... ..++|+++|+||+|+...+.... ....+++.++.+ ++++||++ .|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP-FYETSAKSKINVDEVF 155 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence 9999999999999999998876532 35799999999999976554433 677788888865 99999999 9999999
Q ss_pred HHHHHHH
Q 010673 443 SRIIWAA 449 (504)
Q Consensus 443 ~~l~~~~ 449 (504)
++|++.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 35
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=1.6e-24 Score=197.65 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=130.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||+++|..+.|...+.||++..+.. .+.+++....+.+||++|++.+..++ ..+++.+|++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLR--PLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhhh--hhhcccCCEEEE
Confidence 799999999999999999999999988888999876653 46666444566789999998877765 458899999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCc------------cc-hHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT------------MA-VQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~------------~~-~~~~~~~~~~~~~~~~~~ 430 (504)
|||+++++||+.+. .|+..+... .+++|+++|+||+|+.... .+ .+++++++++.+...+++
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~----~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHH----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 99999999999996 588888765 4579999999999986542 22 336778888887545999
Q ss_pred Eeccc-cCHHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~~ 449 (504)
+||++ .|++++|+.++..+
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999 99999999998864
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=3.5e-24 Score=193.45 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=136.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+.+.+....+.+||++|.+.+..++ ..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR--NEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH--HHHhccCCEEEE
Confidence 589999999999999999999999988888999888877778877555666789999987777665 557899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccC--CCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGED--SGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
|||++++.+|+.+..|+..+.+.... ...+.|+++|+||+|+..+... .++...++...+.+ ++++||++ .|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~ 157 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNE 157 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 99999999999999999999875321 0146899999999999754433 44677788888876 99999999 99999
Q ss_pred HHHHHHHHHh
Q 010673 441 VFSRIIWAAE 450 (504)
Q Consensus 441 l~~~l~~~~~ 450 (504)
+|+.|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 37
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=4.3e-24 Score=199.08 Aligned_cols=164 Identities=24% Similarity=0.350 Sum_probs=140.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+|+|++|||||||+++|.+..+...+.+|.+..+....+.+++....+.+||++|++.+..++ ..+++.+|+
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~a~~ 81 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT--STYYRGTHG 81 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH--HHHhCCCcE
Confidence 357999999999999999999999999888888898877777778777444456789999987777666 558899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+++|||+++++||+.+..|+..+... ....|+++|+||+|+....... ++...+++.++.+ ++++||++ .||+
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~----~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi~ 156 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQN----CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINVE 156 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCHH
Confidence 99999999999999999999998776 4579999999999998765544 4778888888876 99999999 9999
Q ss_pred HHHHHHHHHHhCC
Q 010673 440 NVFSRIIWAAEHP 452 (504)
Q Consensus 440 el~~~l~~~~~~~ 452 (504)
++|++|.+.+...
T Consensus 157 ~lf~~l~~~~~~~ 169 (199)
T cd04110 157 EMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987543
No 38
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=2.8e-24 Score=193.83 Aligned_cols=159 Identities=21% Similarity=0.365 Sum_probs=133.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||+++++.+.+...+.+|++..+. ..+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHH--HHHHhhCCEEEE
Confidence 68999999999999999999998888778888887654 456776444556689999998888877 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|+.+..|+..+..... ..+.|+++|+||+|+........ ...++++.++.+ ++++||++ .|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVNEIF 155 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHHHHH
Confidence 9999999999999999998876422 45899999999999987555443 677888888876 99999999 9999999
Q ss_pred HHHHHHH
Q 010673 443 SRIIWAA 449 (504)
Q Consensus 443 ~~l~~~~ 449 (504)
++|++.+
T Consensus 156 ~~l~~~l 162 (164)
T cd04175 156 YDLVRQI 162 (164)
T ss_pred HHHHHHh
Confidence 9998765
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=3.2e-24 Score=202.72 Aligned_cols=162 Identities=15% Similarity=0.244 Sum_probs=137.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|.+|||||||+++++.+.+...+.+|.+..+....+..+++...+.+||++|++.+..++ ..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--DGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHcccccE
Confidence 567899999999999999999999999988888999877776667666555677789999998887776 457899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
+|+|||++++.||..+..|+..+.+. ..+.|+++||||+|+.......+.. .+++..+++ ++++||++ .||++
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~----~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i~~ 162 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNFEK 162 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCHHH
Confidence 99999999999999999999999876 4589999999999996543333344 777777776 99999999 99999
Q ss_pred HHHHHHHHHhC
Q 010673 441 VFSRIIWAAEH 451 (504)
Q Consensus 441 l~~~l~~~~~~ 451 (504)
+|++|++.+..
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999988753
No 40
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=6.4e-24 Score=192.70 Aligned_cols=165 Identities=16% Similarity=0.285 Sum_probs=137.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|++|||||||+++|+++.+...+.+|.+..+....+.+++....+.+||++|++.+..++ ..+++.+|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~ 80 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR--TPFYRGSDC 80 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH--HHHhcCCCE
Confidence 356899999999999999999999999888777888877766677777555566789999998887776 458899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccC-CCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+++|||+++++||+.+..|+..+...... ...++|+++|+||+|+.......+++++++++++..+++++||++ .|+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999999888765321 124789999999999975444455888999999865699999999 9999
Q ss_pred HHHHHHHHH
Q 010673 440 NVFSRIIWA 448 (504)
Q Consensus 440 el~~~l~~~ 448 (504)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999864
No 41
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=3.3e-24 Score=193.98 Aligned_cols=159 Identities=16% Similarity=0.244 Sum_probs=131.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++++.+.+...+.+|.+..+....+...++...+.+||++|++.+..+. ..++..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR--DGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--HHHhcCCCEEEE
Confidence 589999999999999999999988887788888876666556666455667789999987776655 457889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
|||++++.|++.+..|+..+... ..++|+++|+||+|+.... ......++++..+.+ ++++||++ .|++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~----~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRV----CGNIPIVLCGNKVDIKDRK-VKAKQITFHRKKNLQ-YYEISAKSNYNFEKPFL 152 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh----CCCCcEEEEEEchhccccc-CCHHHHHHHHHcCCE-EEEEeCCCCCChHHHHH
Confidence 99999999999999999999876 3489999999999997433 333445677666665 99999999 99999999
Q ss_pred HHHHHHhC
Q 010673 444 RIIWAAEH 451 (504)
Q Consensus 444 ~l~~~~~~ 451 (504)
+|++.+.+
T Consensus 153 ~l~~~~~~ 160 (166)
T cd00877 153 WLARKLLG 160 (166)
T ss_pred HHHHHHHh
Confidence 99988754
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=5.2e-24 Score=193.40 Aligned_cols=160 Identities=23% Similarity=0.319 Sum_probs=135.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+++|++|||||||+++|+++.+...+.||++..+..+.+.+.+....+.+||++|++.+..++ ..+++.+|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA--STYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--HHHhcCCCEEEEE
Confidence 79999999999999999999999988899999988877778777444567789999998887776 4588999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc---hHHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
||++++.++..+..|+..+.+... ....|+++|+||+|+.+.... .+....++++++.+ ++++||++ .|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~~l 156 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKEND--PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVREF 156 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 999999999999999998865421 235789999999998654432 33667888888876 99999999 999999
Q ss_pred HHHHHHHHh
Q 010673 442 FSRIIWAAE 450 (504)
Q Consensus 442 ~~~l~~~~~ 450 (504)
|+.|++.+.
T Consensus 157 f~~l~~~~~ 165 (170)
T cd04108 157 FFRVAALTF 165 (170)
T ss_pred HHHHHHHHH
Confidence 999998874
No 43
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=5.8e-24 Score=192.04 Aligned_cols=160 Identities=23% Similarity=0.378 Sum_probs=135.9
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+|+|++|||||||+++|.++.+...+.+|.+.++..+.+.+++....+.+||++|++.+..+. ..+++.+|+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT--QSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEEE
Confidence 5899999999999999999999998888777788777777778777433467789999988777665 55789999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+... +...++++.++...++++||++ .|++++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHH
Confidence 9999999999999999999987642 3579999999999997665443 4788899988876689999999 999999
Q ss_pred HHHHHHH
Q 010673 442 FSRIIWA 448 (504)
Q Consensus 442 ~~~l~~~ 448 (504)
|+.|.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 44
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=5.3e-24 Score=191.10 Aligned_cols=159 Identities=20% Similarity=0.341 Sum_probs=132.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|+++.+...+.||++..+ ...+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH--HHHHhcCCEEEE
Confidence 6899999999999999999999998888888887755 3446666434455689999998887776 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
|||++++.+|+.+..|+..+.+... ..+.|+++|+||+|+...........++++.++.+ ++++||++ .|++++|+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKD--SDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEAFY 155 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHHHH
Confidence 9999999999999999988876532 34789999999999987544455778888888886 99999999 99999999
Q ss_pred HHHHHH
Q 010673 444 RIIWAA 449 (504)
Q Consensus 444 ~l~~~~ 449 (504)
+|++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=6.3e-24 Score=199.84 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=134.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|+++.|...+.||+...+. ..+.+++....+.+||++|++.+..+. ..+++.+|++|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~--~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR--PLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh--HHhccCCCEEEE
Confidence 68999999999999999999999999889999987765 356777444556689999998887776 458899999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-------------cchHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 430 (504)
|||+++++||+.+ ..|...+... .++.|+++||||+|+.... ...++...++++++..+|++
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEF----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999998 5677766654 4689999999999996531 12348899999999755999
Q ss_pred Eeccc-c-CHHHHHHHHHHHHhCCC
Q 010673 431 VSMKS-K-DLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 431 vSak~-~-gi~el~~~l~~~~~~~~ 453 (504)
|||++ . ||+++|+.++..+..+.
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 99998 7 59999999999876543
No 46
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=8.3e-24 Score=190.93 Aligned_cols=160 Identities=19% Similarity=0.346 Sum_probs=135.9
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+++|++|||||||+++|.+..+...+.||++.++....+..++....+.+||++|.+.+..+. ..+++.++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT--SAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHCCCCEEE
Confidence 4799999999999999999999999988888888887877778887444566789999987777766 45789999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+...+... ++...++...+++ ++++||++ .|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l 156 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEEA 156 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 9999999999999999999987762 2368999999999997755443 4778888888876 99999999 999999
Q ss_pred HHHHHHHH
Q 010673 442 FSRIIWAA 449 (504)
Q Consensus 442 ~~~l~~~~ 449 (504)
++.|.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998764
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=8.9e-24 Score=191.52 Aligned_cols=162 Identities=19% Similarity=0.306 Sum_probs=137.5
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..+||+|+|.+|||||||++++++..+...+.+|.+.++....+.+.++...+.+||++|.+.+..+. ..+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEE
Confidence 35899999999999999999999999888887888877777777777545567789999987777665 5688999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++.|++.+..|+..+.... .++.|+++|+||+|+...... .++...++..+++. ++++||++ .|+++
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~ 156 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHS---NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVEE 156 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 99999999999999999999987652 357999999999999854443 44778888888886 99999999 99999
Q ss_pred HHHHHHHHHh
Q 010673 441 VFSRIIWAAE 450 (504)
Q Consensus 441 l~~~l~~~~~ 450 (504)
+|..+++.+.
T Consensus 157 ~~~~~~~~~~ 166 (168)
T cd01866 157 AFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 48
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=4.5e-24 Score=197.49 Aligned_cols=163 Identities=21% Similarity=0.323 Sum_probs=134.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+|+|.+|||||||+++|+.+.+...+.+|++..+. ..+.+++....+.+||++|.+.+..++ ..+++.+|++|+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALR--DQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHHhCCEEEEE
Confidence 5899999999999999999999998888888876554 345566444556789999988887776 4588999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
||++++.||+.+..|+..+.........+.|+++|+||+|+...+.... ...++++.++.+ ++++||++ .|++++|+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERAFY 156 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHHH
Confidence 9999999999999999988765321135789999999999976555443 677888888886 99999999 99999999
Q ss_pred HHHHHHhCC
Q 010673 444 RIIWAAEHP 452 (504)
Q Consensus 444 ~l~~~~~~~ 452 (504)
++++.+...
T Consensus 157 ~l~~~l~~~ 165 (190)
T cd04144 157 TLVRALRQQ 165 (190)
T ss_pred HHHHHHHHh
Confidence 999887543
No 49
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=7.4e-24 Score=190.49 Aligned_cols=157 Identities=17% Similarity=0.319 Sum_probs=134.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC--CCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~--~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
+||+++|++|||||||+++|+++.+...+.+|.+.++....+.+. +....+.+||++|++.+..++ ..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH--HHHhcCCCEE
Confidence 489999999999999999999999888888888877766666665 455667789999998887776 4588999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++++|+.+..|+..+... ..++|+++|+||+|+..+.... ++...+++.++++ ++++||++ .|+++
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 153 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAE----CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNVTE 153 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence 9999999999999999999998765 4589999999999997765544 4788899999986 99999999 99999
Q ss_pred HHHHHHHH
Q 010673 441 VFSRIIWA 448 (504)
Q Consensus 441 l~~~l~~~ 448 (504)
++++|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999754
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=6e-24 Score=193.72 Aligned_cols=157 Identities=22% Similarity=0.346 Sum_probs=129.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|.+|||||||+.+++.+.+...+.||....+. ..+.+++....+.+||++|++.+..++ ..+++.+|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhcCCCCEEEE
Confidence 68999999999999999999999998888888876544 345666444566789999998887776 458899999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-------------cchHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 430 (504)
|||+++++||+.+. .|+..+... .++.|+++|+||+|+.+.+ ...++..++++.++..++++
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 99999999999985 688877665 4589999999999996532 22347888999998645999
Q ss_pred Eeccc-cCHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~ 448 (504)
|||++ .|++++|+.+++.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 99999 9999999999864
No 51
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=8.7e-24 Score=195.26 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=137.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+++....+.+||++|.+.+...+ ..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN--NSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH--HHHccCCCEEEE
Confidence 589999999999999999999999987788888877777778877444556689999987777665 568899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+..... .....+++.++++ ++++||++ .|++++|
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~---~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~~f 154 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYA---RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEEAF 154 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 999999999999999999988652 2368999999999998655543 3777888888885 99999999 9999999
Q ss_pred HHHHHHHhCC
Q 010673 443 SRIIWAAEHP 452 (504)
Q Consensus 443 ~~l~~~~~~~ 452 (504)
++|++.+...
T Consensus 155 ~~l~~~~~~~ 164 (188)
T cd04125 155 ILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHH
Confidence 9999988543
No 52
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=8.9e-24 Score=190.16 Aligned_cols=159 Identities=18% Similarity=0.257 Sum_probs=131.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||+++|+++.+...+.+|.+..+....+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH--ASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999999887777777666665556666444456689999998888776 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
|||++++.++..+..|+..+.+. .+++|+++|+||+|+... ......++++.++.+ ++++||++ .|++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~----~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREY----RPEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKLFQ 151 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh----CCCCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHHH
Confidence 99999999999999999999765 457999999999998532 233456677777775 89999999 99999999
Q ss_pred HHHHHHhCC
Q 010673 444 RIIWAAEHP 452 (504)
Q Consensus 444 ~l~~~~~~~ 452 (504)
.+++.+..+
T Consensus 152 ~l~~~~~~~ 160 (161)
T cd04124 152 DAIKLAVSY 160 (161)
T ss_pred HHHHHHHhc
Confidence 999877543
No 53
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=1.1e-23 Score=198.02 Aligned_cols=163 Identities=20% Similarity=0.341 Sum_probs=137.7
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCc-EEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~-~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
.+||+|+|++|||||||+++|++..+...+.+|++.++..+.+.+.++. ..+.+||++|++.+..+. ..+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT--RSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH--HHHhcCCcEE
Confidence 4899999999999999999999999988888888877777777775343 456689999988777765 4588999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++.||+.+..|+..+..... ...+|+++|+||+|+...+... ++..++++.++++ ++++||++ .|+++
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~e 156 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMK-YIETSARTGDNVEE 156 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence 999999999999999999999876532 2367899999999998765554 4788999999976 99999999 99999
Q ss_pred HHHHHHHHHhC
Q 010673 441 VFSRIIWAAEH 451 (504)
Q Consensus 441 l~~~l~~~~~~ 451 (504)
+|+.|++.+..
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 54
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=8e-24 Score=195.65 Aligned_cols=163 Identities=18% Similarity=0.306 Sum_probs=136.5
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..+||+|+|.+|||||||++++.+..+...+.+|.+..+ .+.+.++++...+.+||++|++.+..++ ..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR--DQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH--HHHhhcCCEE
Confidence 358999999999999999999999998888888888766 4456677554556689999998888776 4588999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++++|+.+..|+..+..... ..++|+++|+||+|+.....+. .+...+++.++.+ ++++||++ .|+++
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNVDE 157 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCHHH
Confidence 999999999999999999998876522 3478999999999997655443 3677888888876 99999999 99999
Q ss_pred HHHHHHHHHhC
Q 010673 441 VFSRIIWAAEH 451 (504)
Q Consensus 441 l~~~l~~~~~~ 451 (504)
+|++|++.+..
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 55
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=1.1e-23 Score=195.05 Aligned_cols=167 Identities=22% Similarity=0.390 Sum_probs=138.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCC-CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~-~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+||+|+|++|||||||+++|.+..+.. .+.+|++..+....+.+++....+.+||++|++.+.... ..+++.+|++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT--HAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh--HHHccCCCEEE
Confidence 589999999999999999999998864 566787777766667777545567789999988777665 45789999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.+|+++..|+..+.... ..++|+++|+||+|+...+... ++...+++.++.+ ++++||++ .|++++
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~~l 154 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELA 154 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 9999999999999999999988752 2478999999999997655443 4788888888886 99999999 999999
Q ss_pred HHHHHHHHhCCCCCCC
Q 010673 442 FSRIIWAAEHPHLNIP 457 (504)
Q Consensus 442 ~~~l~~~~~~~~~~~~ 457 (504)
|++|.+.+.......+
T Consensus 155 ~~~l~~~~~~~~~~~~ 170 (191)
T cd04112 155 FTAVAKELKHRKYEQP 170 (191)
T ss_pred HHHHHHHHHHhccccC
Confidence 9999998866654444
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=1.1e-23 Score=190.43 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=129.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++++++.+...+.+|....+. ..+....+...+.+||++|.+.+..+. ..+++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKNICTLQITDTTGSHQFPAMQ--RLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE-EEEEECCEEEEEEEEECCCCCcchHHH--HHHhhcCCEEEE
Confidence 78999999999999999999999988777787776543 335555344566789999998877665 457789999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.||+.+..|+..+........+++|+++|+||+|+...+... .....++..++.+ ++++||++ .|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~~f 157 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQELF 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHHHH
Confidence 9999999999999999888776532223579999999999997744443 3667788888875 99999999 9999999
Q ss_pred HHHHHH
Q 010673 443 SRIIWA 448 (504)
Q Consensus 443 ~~l~~~ 448 (504)
++|++.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999864
No 57
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=7.2e-24 Score=190.65 Aligned_cols=159 Identities=24% Similarity=0.401 Sum_probs=138.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+|+|+++||||||+++|.++.+...+.+|.+.+.....+.+++....+.+||.+|++.+..+. ...++++|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR--DIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH--HHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 79999999999999999999999998888998777878888888555566678888887777665 4578999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
||+++++||+.+..|+..+.... ..+.|+++||||+|+...+.+. +++++++++++.+ ++++||++ .||.++|.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~---~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYK---PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVP-YFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHS---TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSE-EEEEBTTTTTTHHHHHH
T ss_pred ccccccccccccccccccccccc---cccccceeeeccccccccccchhhHHHHHHHHhCCE-EEEEECCCCCCHHHHHH
Confidence 99999999999999999998873 2369999999999998755554 4899999999965 99999999 99999999
Q ss_pred HHHHHHh
Q 010673 444 RIIWAAE 450 (504)
Q Consensus 444 ~l~~~~~ 450 (504)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 58
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1e-23 Score=194.94 Aligned_cols=162 Identities=21% Similarity=0.284 Sum_probs=132.7
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+|+|++|||||||+++|.++.+...+.||....+. ..+.+++....+.+||++|++.+..++ ..+++.+|++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLR--SLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccc--cccccCCCEEEEE
Confidence 7999999999999999999999998888888877654 345566444567789999998777766 3478999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-------------hHHHHHHHHHhCCCCeEEE
Q 010673 366 YDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQDSARVTQELGIEPPIPV 431 (504)
Q Consensus 366 ~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~~~~~~~v 431 (504)
||++++.||+.+. .|+..+... .++.|+++|+||+|+...... .++..++++..+...+++|
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~----~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREH----CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 9999999999886 688888765 458999999999999765421 2356677888774459999
Q ss_pred eccc-cCHHHHHHHHHHHHhCCCC
Q 010673 432 SMKS-KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~~~~~~ 454 (504)
||++ .|++++|++|++.+..+..
T Consensus 155 SAk~~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHhcccc
Confidence 9999 9999999999999876544
No 59
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=8.4e-24 Score=196.55 Aligned_cols=168 Identities=19% Similarity=0.223 Sum_probs=128.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhh------hhhhhhhccc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALAS 358 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~------~~~~~~~~~~ 358 (504)
+||+|+|.+|||||||+++|+++++...+.||++..+....+.+++....+.+||++|...+.. .......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888887666555566663334566788877532210 0012345789
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHH-HhCCCCeEEEeccc-
Q 010673 359 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQ-ELGIEPPIPVSMKS- 435 (504)
Q Consensus 359 ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~~vSak~- 435 (504)
+|++|+|||+++++||+.+..|+..+.........++|+++|+||+|+...+.... ..+.++. .++++ +++|||++
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG-YLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCc-EEEecCCCC
Confidence 99999999999999999999999888765211135799999999999976554433 5666654 45665 99999999
Q ss_pred cCHHHHHHHHHHHHhCCC
Q 010673 436 KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~~~ 453 (504)
.||+++|+.+++.+..+.
T Consensus 160 ~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 160 WHILLLFKELLISATTRG 177 (198)
T ss_pred CCHHHHHHHHHHHhhccC
Confidence 999999999999876543
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=1.3e-23 Score=189.45 Aligned_cols=160 Identities=20% Similarity=0.380 Sum_probs=132.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|++..+...+.+|++..+. ..+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQEEFSAMR--DQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEECCEEEEEEEEECCCcccchHHH--HHHHhhCCEEEE
Confidence 48999999999999999999999988888788776543 446666444566689999988877776 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++++|+.+..|+..+.+... ..+.|+++|+||+|+...+... +....+++.++.+ ++++||++ .|++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKD--RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETSAKERVNVDEAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEeecCCCCCHHHHH
Confidence 9999999999999999888876532 3478999999999998755443 4777888888875 99999999 9999999
Q ss_pred HHHHHHHh
Q 010673 443 SRIIWAAE 450 (504)
Q Consensus 443 ~~l~~~~~ 450 (504)
++|++.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T smart00173 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=1.1e-23 Score=189.70 Aligned_cols=159 Identities=21% Similarity=0.329 Sum_probs=131.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||++++..+.+...+.+|.+. +....+.+++....+.+||++|.+.+..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccchH--HHHHhhCCEEEE
Confidence 79999999999999999999999998888777764 444567777444456689999998887776 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.||.++..|+..+..... ..++|+++|+||+|+....... .....+++.++.+ ++++||++ .|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSAKSKTMVNELF 155 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHHH
Confidence 9999999999999999998876522 3589999999999997654433 3677888888875 89999999 9999999
Q ss_pred HHHHHHH
Q 010673 443 SRIIWAA 449 (504)
Q Consensus 443 ~~l~~~~ 449 (504)
+++++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 62
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=5.4e-24 Score=204.09 Aligned_cols=180 Identities=18% Similarity=0.269 Sum_probs=139.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||+++|+++.+...+.+|+++ +..+.+.+++....+.+||++|.+.+..+. ..++..+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~--~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-FHRKLYSIRGEVYQLDILDTSGNHPFPAMR--RLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-hEEEEEEECCEEEEEEEEECCCChhhhHHH--HHHhccCCEEEE
Confidence 48999999999999999999999998888888874 455567777444556689999987777665 346789999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcc------CCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHh-CCCCeEEEeccc-
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGE------DSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQEL-GIEPPIPVSMKS- 435 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~------~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~-~~~~~~~vSak~- 435 (504)
|||+++++||+.+..|+.++..... ....++|+++|+||+|+...+.+ .+++.+++... +. .++++||++
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~-~~~evSAktg 156 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC-AYFEVSAKKN 156 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC-EEEEEeCCCC
Confidence 9999999999999999988865311 11357999999999999764433 33566665543 34 489999999
Q ss_pred cCHHHHHHHHHHHHhCCCCCCCCcccccchhhH
Q 010673 436 KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRY 468 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 468 (504)
.||+++|+.|++.+..|....|......+...+
T Consensus 157 ~gI~elf~~L~~~~~~p~e~~~~~~~~~~~~~~ 189 (247)
T cd04143 157 SNLDEMFRALFSLAKLPNEMSPSLHRKISVQYG 189 (247)
T ss_pred CCHHHHHHHHHHHhccccccCccccceeeeeec
Confidence 999999999999987777666655444444433
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=2.1e-23 Score=187.50 Aligned_cols=158 Identities=21% Similarity=0.378 Sum_probs=134.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|.+..+...+.+|.+..+....+.+++....+.+||++|++.+..+. ..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT--RSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH--HHHhcCCCEEEE
Confidence 589999999999999999999999888888888877777777777444566789999987776665 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|..+..|+..+.... .+++|+++|+||+|+...... .++...+++.++.. ++++||++ .|++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALA---SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEEAF 154 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 999999999999999999886542 358999999999999775544 34788889999865 99999999 9999999
Q ss_pred HHHHHH
Q 010673 443 SRIIWA 448 (504)
Q Consensus 443 ~~l~~~ 448 (504)
+++++.
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 64
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=5.4e-24 Score=180.42 Aligned_cols=162 Identities=22% Similarity=0.357 Sum_probs=144.1
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcE-EEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNK-KTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~-~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
..++++++|++-||||||++.|+.+++++-..||.+.++..+.+++..|.. ++.+||++|+++++++. ..|++++=+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsit--ksyyrnsvg 84 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT--KSYYRNSVG 84 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH--HHHhhcccc
Confidence 468999999999999999999999999999999999998888788776654 56689999999999997 679999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
+++|||.+|..||+.+..|+.+...+.. .+..+ ..+||+|+|+...+++.. ++++|++.+|+. ++++||++ .|+
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NV 161 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNV 161 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcH
Confidence 9999999999999999999999877643 34444 579999999999888865 999999999998 99999999 999
Q ss_pred HHHHHHHHHHH
Q 010673 439 NNVFSRIIWAA 449 (504)
Q Consensus 439 ~el~~~l~~~~ 449 (504)
++.|..|.+.+
T Consensus 162 eEAF~mlaqeI 172 (213)
T KOG0091|consen 162 EEAFDMLAQEI 172 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=2.7e-23 Score=187.20 Aligned_cols=160 Identities=19% Similarity=0.359 Sum_probs=132.4
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.+||+++|++|||||||++++++..+...+.+|++..+. ..+.+++....+.+||++|++.+..++ ..+++.+|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEIDGQWAILDILDTAGQEEFSAMR--EQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEECCEEEEEEEEECCCCcchhHHH--HHHHhhCCEEE
Confidence 479999999999999999999999887777788776553 345666334566789999998887776 45889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|||++++.+|+.+..|+..+.+... ..+.|+++|+||+|+....... +...++++.++.+ ++++||++ .|++++
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l 155 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSAKDRLNVDKA 155 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeCCCCCCHHHH
Confidence 99999999999999999988876422 3578999999999997755443 3778888888875 99999999 999999
Q ss_pred HHHHHHHH
Q 010673 442 FSRIIWAA 449 (504)
Q Consensus 442 ~~~l~~~~ 449 (504)
|+.|++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 66
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=3.2e-23 Score=195.54 Aligned_cols=164 Identities=19% Similarity=0.330 Sum_probs=140.9
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++....+.+||++|++.+..+. ..+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--SAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhCCCCE
Confidence 456899999999999999999999999888888899888888888887544567789999998887776 558899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.... ....++..++++ ++++||++ .|++
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v~ 163 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHA---DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNVE 163 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 999999999999999999999887652 24799999999999977665543 778888888876 99999999 9999
Q ss_pred HHHHHHHHHHhC
Q 010673 440 NVFSRIIWAAEH 451 (504)
Q Consensus 440 el~~~l~~~~~~ 451 (504)
++|+.|++.+..
T Consensus 164 ~lf~~l~~~i~~ 175 (216)
T PLN03110 164 KAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999987743
No 67
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=4e-23 Score=186.18 Aligned_cols=158 Identities=22% Similarity=0.310 Sum_probs=131.0
Q ss_pred EEEEEEcCCCchhhHHHHHHhcC--CCCCCCCCCccceEEEEEEEcCCC-cEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~--~~~~~~~~T~~~~~~~~~v~~~~~-~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
+||+++|++|||||||+++|... .+...+.+|++.++..+.+.+.++ ...+.+||++|.+.+..+. ..++.++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV--SNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH--HHHhCCCCE
Confidence 48999999999999999999865 677778888887777666766533 3566788989987777765 457899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+++|||++++.++..+..|+..+... ..+.|+++|+||+|+.+..+... ..+.++..++.+ ++++||++ .|++
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~ 153 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTA----SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGYE 153 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCChH
Confidence 99999999999999999999998865 34799999999999976655443 556777777776 99999999 9999
Q ss_pred HHHHHHHHHH
Q 010673 440 NVFSRIIWAA 449 (504)
Q Consensus 440 el~~~l~~~~ 449 (504)
++|+.|++.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 68
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=176.43 Aligned_cols=163 Identities=21% Similarity=0.360 Sum_probs=148.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
.-.+|++++|+.|.|||+|+++|+.+++......|++.++..+.+.+.+...++.+||++|++++++.. ..|++.|-+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt--RsYYRGAAG 84 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGAAG 84 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHH--HHHhccccc
Confidence 456899999999999999999999999999999999999999999999666778899999999999997 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
.++|||+++++||+.+..|+..++... .+++-++++|||.|+..++++.- ++.+||++..+. +.++||++ .|++
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lA---s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNVE 160 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVE 160 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhC---CCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccHH
Confidence 999999999999999999999988763 56888999999999999888865 899999999996 99999999 9999
Q ss_pred HHHHHHHHHHh
Q 010673 440 NVFSRIIWAAE 450 (504)
Q Consensus 440 el~~~l~~~~~ 450 (504)
|.|-...+.+.
T Consensus 161 EaFl~c~~tIl 171 (214)
T KOG0086|consen 161 EAFLKCARTIL 171 (214)
T ss_pred HHHHHHHHHHH
Confidence 99988777664
No 69
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=3.4e-23 Score=191.06 Aligned_cols=162 Identities=22% Similarity=0.358 Sum_probs=132.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC-CCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~-~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+||+|+|++|||||||+++|.++.+...+.+|++..+... +... +....+.+||++|++.+..++ ..+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLR--PLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHH--HHhCCCCCEEE
Confidence 4899999999999999999999999888888887765443 5554 334466789999988777665 45789999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-----cchHHHHHHHHHhCCCCeEEEeccc-c
Q 010673 364 FVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----MAVQDSARVTQELGIEPPIPVSMKS-K 436 (504)
Q Consensus 364 lV~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~vSak~-~ 436 (504)
+|||++++.||+.+. .|+..+... .++.|+++|+||+|+.... ....+.++++..++..+++++||++ .
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 999999999999985 588877654 4589999999999986543 1244788899999985599999999 9
Q ss_pred CHHHHHHHHHHHHhCCC
Q 010673 437 DLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 437 gi~el~~~l~~~~~~~~ 453 (504)
|++++|+.+.+.+....
T Consensus 154 ~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 154 NVEEVFDTAIEEALKKE 170 (187)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999886543
No 70
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=2.9e-23 Score=192.73 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=132.0
Q ss_pred EcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCC
Q 010673 290 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSS 369 (504)
Q Consensus 290 vG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s 369 (504)
+|.+|||||||+++|+.+.+...+.+|++.++....+.++++...+.+||++|++.+..++ ..+++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhcCCCEEEEEEECC
Confidence 6999999999999999998888888899887877777777556677789999998888876 45899999999999999
Q ss_pred CcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHH
Q 010673 370 DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 370 ~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~ 448 (504)
++.||..+..|+..+.+. ..++|+++||||+|+..... ......+++..++. +++|||++ .||+++|++|++.
T Consensus 79 ~~~S~~~i~~w~~~i~~~----~~~~piilvgNK~Dl~~~~v-~~~~~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRV----CENIPIVLCGNKVDVKDRKV-KAKSITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred ChHHHHHHHHHHHHHHHh----CCCCCEEEEEECcccccccC-CHHHHHHHHHcCCE-EEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999876 45899999999999865333 33334678888886 99999999 9999999999988
Q ss_pred HhC
Q 010673 449 AEH 451 (504)
Q Consensus 449 ~~~ 451 (504)
+..
T Consensus 153 i~~ 155 (200)
T smart00176 153 LIG 155 (200)
T ss_pred HHh
Confidence 754
No 71
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=2.2e-23 Score=189.93 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=129.9
Q ss_pred EEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEE
Q 010673 287 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 366 (504)
Q Consensus 287 I~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~ 366 (504)
|+|+|++|||||||+++|.++.+...+.+|....+.. .+.+++....+.+||++|++.+..+. ..+++.+|++|+||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDYDRLR--PLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeE-EEEECCEEEEEEEEECCCCcccchhc--hhhcCCCCEEEEEE
Confidence 6899999999999999999999988887887765543 46666444456789999988776665 45789999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc------------c-hHHHHHHHHHhCCCCeEEEe
Q 010673 367 DSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------A-VQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 367 D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~~~~~vS 432 (504)
|+++++||+.+. .|+..+... .+++|+++|+||+|+..... + .++..++++.++...+++||
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHF----CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 999999999985 588888765 45899999999999975332 2 23677899999975599999
Q ss_pred ccc-cCHHHHHHHHHHHHhC
Q 010673 433 MKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~~ 451 (504)
|++ .|++++|+.+++.+.+
T Consensus 154 a~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 154 ALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCCHHHHHHHHHHHhcC
Confidence 999 9999999999988754
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=6.4e-23 Score=186.28 Aligned_cols=161 Identities=19% Similarity=0.325 Sum_probs=135.0
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHh-hhhhhhhhcccccEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT 362 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~-~~~~~~~~~~~ad~i 362 (504)
.+||+++|++|||||||++++++..+...+.+|.+..+....+.+++....+.+||++|++.+. .+. ..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV--QHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH--HHhhcCCCEE
Confidence 5899999999999999999999999887777888877777778887555667789999987765 344 4578999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc----cC
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS----KD 437 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~----~g 437 (504)
++|||++++.+|..+..|+..+..... ..++|+++|+||+|+...++... +..++++.++++ ++++||++ .|
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~ 156 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSL--PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDH 156 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcC--CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCC
Confidence 999999999999999999998886532 35799999999999987666544 778889888876 99999995 68
Q ss_pred HHHHHHHHHHHH
Q 010673 438 LNNVFSRIIWAA 449 (504)
Q Consensus 438 i~el~~~l~~~~ 449 (504)
++++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 73
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.91 E-value=5.4e-23 Score=184.69 Aligned_cols=158 Identities=20% Similarity=0.369 Sum_probs=133.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|++..+...+.++++.++....+.+++....+.+||++|...+..+. ..+++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEEEE
Confidence 489999999999999999999999988888888877777778877444567789999987777665 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+....+. .++...+++..+.+ ++++||++ .|+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDER---GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKELF 154 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHHHH
Confidence 999999999999999999887542 236999999999999654443 34778888888876 99999999 9999999
Q ss_pred HHHHHH
Q 010673 443 SRIIWA 448 (504)
Q Consensus 443 ~~l~~~ 448 (504)
++|.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 74
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=7.2e-23 Score=184.29 Aligned_cols=160 Identities=23% Similarity=0.386 Sum_probs=135.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++....+.+||++|.+.+.... ..+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT--SSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhCCCCEEEE
Confidence 589999999999999999999999877777888877777778887444566788999887776655 557899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+++.+..|+..+..+. .+++|+++|+||+|+....+. .+...++++.++++ ++++||++ .|+++++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~---~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYA---DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEEAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 999999999999999999988763 258999999999998775443 34778888888887 99999999 9999999
Q ss_pred HHHHHHHh
Q 010673 443 SRIIWAAE 450 (504)
Q Consensus 443 ~~l~~~~~ 450 (504)
+.|.+.+.
T Consensus 155 ~~i~~~~~ 162 (164)
T smart00175 155 EELAREIL 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 75
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=7.2e-23 Score=189.90 Aligned_cols=160 Identities=18% Similarity=0.271 Sum_probs=132.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCC-CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~-~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+||+|+|++|||||||+++|+++.+.. .+.+|++..+..+.+.+++....+.+||++|.+.+..+. ..+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS--RIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HhhcCCCCEEE
Confidence 489999999999999999999998875 577888887877778888444555688999987777665 45778999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc----cc-hHHHHHHHHHhCCCCeEEEeccc-cC
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT----MA-VQDSARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~----~~-~~~~~~~~~~~~~~~~~~vSak~-~g 437 (504)
+|||++++.+|+.+..|+..+... ..+.|+++|+||+|+.... +. ..++.+++..++.+ ++++||++ .|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 153 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNL----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTGQN 153 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhc----CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCCCC
Confidence 999999999999999999998765 3479999999999986432 22 23677788888876 89999999 99
Q ss_pred HHHHHHHHHHHHhC
Q 010673 438 LNNVFSRIIWAAEH 451 (504)
Q Consensus 438 i~el~~~l~~~~~~ 451 (504)
++++|+.|.+.+..
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=1e-22 Score=182.92 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=134.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|++..+...+.+|.+.++....+.+++....+.+||++|.+.+.... ...++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT--SSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999998877777888877777667776444567789999987766555 457889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
|||++++.+|+.+..|+..+..+.. ..+.|+++|+||+|+.......++..++++..+++ ++++||++ .|++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYST--NNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQAFE 155 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHH
Confidence 9999999999999999998877632 45799999999999986555556788889988887 99999999 99999999
Q ss_pred HHHHH
Q 010673 444 RIIWA 448 (504)
Q Consensus 444 ~l~~~ 448 (504)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 98865
No 77
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=7.5e-23 Score=192.43 Aligned_cols=156 Identities=17% Similarity=0.270 Sum_probs=127.0
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|.+|||||||+++|+.+.+.. +.+|++..+....+ +...+.+||++|++.+..+. ..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLG--SMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhH--HHHhccCCEEEE
Confidence 489999999999999999999999864 46787765544332 33567789999998887776 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC-------------------Cccc-hHHHHHHHHHhC
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP-------------------YTMA-VQDSARVTQELG 424 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~-------------------~~~~-~~~~~~~~~~~~ 424 (504)
|||++++.||+.+..|+..+.+.. ..++|+++|+||+|+.. .+++ .++...++++++
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 999999999999998888776542 35789999999999975 2333 348889999877
Q ss_pred C-------------CCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 425 I-------------EPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 425 ~-------------~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
. .++++|||++ .||+++|..+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 2489999999 999999999998764
No 78
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=1.3e-22 Score=182.68 Aligned_cols=159 Identities=24% Similarity=0.362 Sum_probs=135.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|++.++...+.+|.+..+....+.+++....+.+||++|++.+...+ ..+++.+|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA--PMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhccCCEEEE
Confidence 799999999999999999999999887777888877777778888555567789999987776665 457889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+...... .+....++..++.+ ++++||++ .|+++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNA---SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVNELF 155 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHH
Confidence 999999999999999999987762 257999999999998754433 34777888888876 99999999 9999999
Q ss_pred HHHHHHH
Q 010673 443 SRIIWAA 449 (504)
Q Consensus 443 ~~l~~~~ 449 (504)
++|++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9998875
No 79
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=190.75 Aligned_cols=163 Identities=18% Similarity=0.296 Sum_probs=138.1
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..+||+|+|++|||||||+++|++..+...+.+|++.++....+.+++....+.+||++|.+.+..++ ..+++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~--~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--RSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCCEE
Confidence 46899999999999999999999999888888888887777777887444456689999987776665 5578899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+... ++.+++++.++++ ++++||++ .|+++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~e 158 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEE 158 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence 99999999999999999998876542 3479999999999998765544 4788999999986 99999999 99999
Q ss_pred HHHHHHHHHhC
Q 010673 441 VFSRIIWAAEH 451 (504)
Q Consensus 441 l~~~l~~~~~~ 451 (504)
+|+++++.+..
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 80
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=7.8e-24 Score=178.37 Aligned_cols=164 Identities=17% Similarity=0.264 Sum_probs=145.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
.-.|||+++|..-||||||+-+++.++|......|....|..+.+.+.+....+.+||++|++++..+- .-|++.+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG--PIYYRgSnG 88 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG--PIYYRGSNG 88 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC--ceEEeCCCc
Confidence 456899999999999999999999999988887888888888888888666667799999999998876 459999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+++|||++|++||+.++.|..+++... ...+-+++||||+|+.+++++.. +++.+++..|.. |+++||+. .||.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~ml---Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTML---GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVGIS 164 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHh---CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccCHH
Confidence 999999999999999999999998763 34788999999999999888765 899999999997 99999999 9999
Q ss_pred HHHHHHHHHHhC
Q 010673 440 NVFSRIIWAAEH 451 (504)
Q Consensus 440 el~~~l~~~~~~ 451 (504)
++|+.|...+.+
T Consensus 165 elFe~Lt~~MiE 176 (218)
T KOG0088|consen 165 ELFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHHH
Confidence 999999886643
No 81
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.90 E-value=9.2e-23 Score=193.02 Aligned_cols=162 Identities=17% Similarity=0.297 Sum_probs=129.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCC-CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcc-cccEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT 362 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~-~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~-~ad~i 362 (504)
+||+++|++|||||||+++|+++.+. ..+.+|.+.++..+.+.+++....+.+||++|.+ .... ..++. .+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~--~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTE--DSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHH--hHHhhcCCCEE
Confidence 58999999999999999999988876 5666666545666677777555556788988886 1111 23455 89999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++.||+.+..|+..+..... ..++|+++|+||+|+...+.+.. +..+++..++++ ++++||++ .||++
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv~~ 153 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNVDE 153 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence 999999999999999999998876521 35799999999999977665543 677888888886 99999999 99999
Q ss_pred HHHHHHHHHhCCC
Q 010673 441 VFSRIIWAAEHPH 453 (504)
Q Consensus 441 l~~~l~~~~~~~~ 453 (504)
+|+.|++.+....
T Consensus 154 l~~~l~~~~~~~~ 166 (221)
T cd04148 154 LLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999885433
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=7.8e-23 Score=189.41 Aligned_cols=156 Identities=22% Similarity=0.304 Sum_probs=120.6
Q ss_pred eEEEEEEcCCCchhhHHHH-HHhcCC-----CCCCCCCCcc--ceEEEE-------EEEcCCCcEEEEEEecCChhhHhh
Q 010673 284 VFRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTG--EQYAVN-------VVDQPGGNKKTLILQEIPEEGVKK 348 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin-~l~~~~-----~~~~~~~T~~--~~~~~~-------~v~~~~~~~~~li~d~~g~~~~~~ 348 (504)
.+||+++|++|||||||+. ++.++. +...+.||++ +.+... .+.+++....+.+||++|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665543 3455677875 223222 124554445666888888854 2
Q ss_pred hhhhhhhcccccEEEEEEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCC-------------------
Q 010673 349 ILSNKEALASCDVTIFVYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKP------------------- 408 (504)
Q Consensus 349 ~~~~~~~~~~ad~iilV~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~------------------- 408 (504)
+. ..+++++|++|+|||++++.||+.+. .|+..+... .++.|+++||||+|+..
T Consensus 80 ~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 DR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF----CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred hh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh----CCCCCEEEEEEchhccccccchhhhccccccccccc
Confidence 32 34789999999999999999999996 599888765 35789999999999864
Q ss_pred Cccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHH
Q 010673 409 YTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 409 ~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~ 448 (504)
.+.+ .+++++++++++++ |++|||++ .||+++|+.++++
T Consensus 154 ~~~V~~~e~~~~a~~~~~~-~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 154 ADILPPETGRAVAKELGIP-YYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCccCHHHHHHHHHHhCCE-EEEcCCCCCCCHHHHHHHHHHh
Confidence 1233 34899999999995 99999999 9999999999874
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.90 E-value=7.4e-23 Score=183.42 Aligned_cols=152 Identities=17% Similarity=0.265 Sum_probs=120.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++++.+.+...+.|+ ...+ ...+.+++....+.+||+.|++. ..+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence 48999999999999999999998887766554 3434 35677774344466788888743 235578999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC--Cccch-HHHHHHHHHhC-CCCeEEEeccc-cCHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP--YTMAV-QDSARVTQELG-IEPPIPVSMKS-KDLN 439 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~--~~~~~-~~~~~~~~~~~-~~~~~~vSak~-~gi~ 439 (504)
|||++++.||+++..|+..+..... ..++|+++||||+|+.. .+.+. ++.++++++.+ +. +++|||++ .||+
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~e~SAk~~~~i~ 148 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRN--ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCS-YYETCATYGLNVE 148 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCc-EEEEecCCCCCHH
Confidence 9999999999999999999986632 35789999999999853 33333 37788888775 54 99999999 9999
Q ss_pred HHHHHHHHH
Q 010673 440 NVFSRIIWA 448 (504)
Q Consensus 440 el~~~l~~~ 448 (504)
++|+.+++.
T Consensus 149 ~~f~~~~~~ 157 (158)
T cd04103 149 RVFQEAAQK 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999864
No 84
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=2.3e-22 Score=182.59 Aligned_cols=166 Identities=19% Similarity=0.293 Sum_probs=135.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||++++.+..+...+.+|.+.++..+.+.++++...+.+||++|++.+..++ ..+++.+|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG--VAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH--HHHhcCCCEEEE
Confidence 589999999999999999999999887777888877777778888544556689999887777666 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcc-CCCCCCcEEEEEECCCCCCCcc-chHHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGE-DSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~-~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
|||++++.+++.+..|...+..... ....++|+++|+||+|+..+.. ..+..+.+++..+..+++++||++ .|++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 9999999999998888887765421 1123799999999999985333 344677888888855699999999 999999
Q ss_pred HHHHHHHHhCC
Q 010673 442 FSRIIWAAEHP 452 (504)
Q Consensus 442 ~~~l~~~~~~~ 452 (504)
++.|.+.+...
T Consensus 159 ~~~i~~~~~~~ 169 (172)
T cd01862 159 FETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999887543
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=3.2e-22 Score=181.28 Aligned_cols=161 Identities=25% Similarity=0.381 Sum_probs=132.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||+++|.++.+...+.+|++..+ .+.+.+++....+.+||++|++.+..++ ..+++.++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMR--ELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhh--HHHHhhCCEEEE
Confidence 6899999999999999999999998877888887654 4556777444566789999998887776 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++++++.+..|...+..... ..+.|+++|+||+|+...+... ++...+++.++..+++++||++ .|++++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999999999888875422 3579999999999997655443 3667788888844599999999 9999999
Q ss_pred HHHHHHHh
Q 010673 443 SRIIWAAE 450 (504)
Q Consensus 443 ~~l~~~~~ 450 (504)
++++..+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99987653
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=4.6e-22 Score=178.46 Aligned_cols=159 Identities=21% Similarity=0.360 Sum_probs=131.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|++..+...+.++++..+....+.+.+....+.+||++|.+.+..++ ..+++++|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG--PIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh--HHHhccCCEEEE
Confidence 589999999999999999999999877777777776666667766444456688988887776665 457789999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++++++.+..|+..+.... ..++|+++|+||+|+....... +...++++.++.+ ++++||++ .|+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMR---GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEELF 154 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHHHH
Confidence 999999999999999999887663 2378999999999998655443 3677788888876 89999999 9999999
Q ss_pred HHHHHHH
Q 010673 443 SRIIWAA 449 (504)
Q Consensus 443 ~~l~~~~ 449 (504)
++|.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998764
No 87
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=2.5e-22 Score=182.87 Aligned_cols=156 Identities=19% Similarity=0.365 Sum_probs=127.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||++++.++.+...+.+|..+.+. ..+.+++....+.+||++|++.+..++ ..+++++|++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS-VVVLVDGKPVRLQLCDTAGQDEFDKLR--PLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee-EEEEECCEEEEEEEEECCCChhhcccc--ccccCCCcEEEE
Confidence 58999999999999999999999988888888765443 346676444566789999987777765 447899999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCC------------ccc-hHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPY------------TMA-VQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~~~~~ 430 (504)
|||++++.||+.+. .|+..+... .++.|+++|+||+|+... +.+ .+++..+++.++...+++
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKH----NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 99999999999884 688888754 357999999999998643 222 337888999999866999
Q ss_pred Eeccc-cCHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIW 447 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~ 447 (504)
+||++ .|++++|+.++-
T Consensus 154 ~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 154 CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 99999 999999998764
No 88
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=2.7e-22 Score=182.70 Aligned_cols=158 Identities=25% Similarity=0.414 Sum_probs=127.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|.++.+...+.+|....+.. .+.+++....+.+||++|++.+..++ ..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCcccccccc--cccCCCCCEEEE
Confidence 589999999999999999999999887777777664433 46666333445689999987776665 457889999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCc------------cc-hHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT------------MA-VQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~------------~~-~~~~~~~~~~~~~~~~~~ 430 (504)
|||++++.+|+.+. .|+..+... .++.|+++|+||+|+.... .+ .++...+++.++..++++
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999885 677777654 4589999999999986532 12 346788889998766999
Q ss_pred Eeccc-cCHHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~~ 449 (504)
|||++ .|++++|+.+++.+
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHh
Confidence 99999 99999999998865
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.89 E-value=4.2e-22 Score=187.46 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=133.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+|+|++|||||||+++|++..+. .+.+|.+.++....+.+++....+.+||++|++.+..++ ..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT--SSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhcCCE
Confidence 34689999999999999999999998874 456787777777777777445567789999998887776 568899999
Q ss_pred EEEEEeCCCcccHHHHHH-HHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 362 TIFVYDSSDEYSWKRTKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~-~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
+|+|||++++++|..+.. |...+..... ..+.|+++|+||+|+....... ++...++..++++ ++++||++ .|+
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~--~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~v 165 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYST--NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENV 165 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence 999999999999999876 5555543321 3468999999999997655543 3677788888876 99999999 999
Q ss_pred HHHHHHHHHHHhCCC
Q 010673 439 NNVFSRIIWAAEHPH 453 (504)
Q Consensus 439 ~el~~~l~~~~~~~~ 453 (504)
+++|++|.+.+....
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 166 EQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998885543
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.89 E-value=1.8e-22 Score=182.36 Aligned_cols=160 Identities=23% Similarity=0.380 Sum_probs=126.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-hhhhhhhhhcccccEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF 364 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-~~~~~~~~~~~~ad~iil 364 (504)
||+++|++|||||||+++++.+.+...+.+|+...+. ..+.+++....+.+||++|.... .... ..+++.+|++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQL--ERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccchH--HHHHHhCCEEEE
Confidence 5899999999999999999998887777777765443 44566644445668999888642 2222 457889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-c-CHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-K-DLNNV 441 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~-gi~el 441 (504)
|||++++.||+.+..|+..+..... ...++|+++|+||+|+...+... ++...+++.++.+ ++++||++ . |++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVHSV 155 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHHHH
Confidence 9999999999999999988876421 02379999999999987654443 4778889988875 99999999 5 89999
Q ss_pred HHHHHHHHh
Q 010673 442 FSRIIWAAE 450 (504)
Q Consensus 442 ~~~l~~~~~ 450 (504)
|+.|++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998653
No 91
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.88 E-value=4.4e-22 Score=183.38 Aligned_cols=167 Identities=23% Similarity=0.356 Sum_probs=143.9
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..+||+++|.+|||||+|+.+|.+..|...|.||+.+.+ .+.+.++++...+.++|+.|++.+..+. ..++.++|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~--~~~~~~~~gF 78 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMR--DLYIRNGDGF 78 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHH--HHhhccCcEE
Confidence 358999999999999999999999999999999999754 4457777566666789999977777776 5688999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++||+++++.||+.+..++..+.+... ...+|+++||||+|+...+++.. +.+.++..++++ ++++||+. .++++
T Consensus 79 ~lVysitd~~SF~~~~~l~~~I~r~~~--~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 79 LLVYSITDRSSFEEAKQLREQILRVKG--RDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVDE 155 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC--cCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHHH
Confidence 999999999999999999999955432 45689999999999998777755 889999999998 99999999 99999
Q ss_pred HHHHHHHHHhCCCCC
Q 010673 441 VFSRIIWAAEHPHLN 455 (504)
Q Consensus 441 l~~~l~~~~~~~~~~ 455 (504)
+|..|.+.+..+...
T Consensus 156 ~F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 156 VFYELVREIRLPREG 170 (196)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999988764433
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=1.6e-21 Score=175.37 Aligned_cols=160 Identities=24% Similarity=0.392 Sum_probs=131.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++++...+...+.+++.+.+.. ....+++...+.+||++|+..+.... ..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEDVQLNILDTAGQEDYAAIR--DNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-EEEECCEEEEEEEEECCChhhhhHHH--HHHhhcCCEEEE
Confidence 589999999999999999999999887777877765543 45556445567789999987777665 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc-chHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM-AVQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||++++.+|..+..|+..+..... ..++|+++|+||+|+..... .......+++.++.+ ++++||++ .|++++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEKAF 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHHHH
Confidence 9999999999999999888876532 34799999999999976333 334677788888886 99999999 9999999
Q ss_pred HHHHHHHh
Q 010673 443 SRIIWAAE 450 (504)
Q Consensus 443 ~~l~~~~~ 450 (504)
+.|.+.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T cd04139 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHH
Confidence 99988764
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=1.2e-21 Score=178.45 Aligned_cols=158 Identities=21% Similarity=0.321 Sum_probs=127.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
.||+|+|++|||||||+++|.++.+...+.||....+.. .+.+++....+.+||++|.+.+..+. ...+.++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCchhhhhcc--ccccCCCCEEEE
Confidence 589999999999999999999999988888888776543 46666444566789999987776665 347789999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc------------c-hHHHHHHHHHhCCCCeEE
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------A-VQDSARVTQELGIEPPIP 430 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~~~~~ 430 (504)
|||++++++|+.+. .|+..+... ..+.|+++|+||+|+..... . ....+++++.++..++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~ 154 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence 99999999998885 587777654 45899999999999865321 1 236677888887656999
Q ss_pred Eeccc-cCHHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~~ 449 (504)
|||++ .|++++|++|.+.+
T Consensus 155 ~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 155 CSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred eccccCcCHHHHHHHHHHHh
Confidence 99999 99999999998765
No 94
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=3.2e-23 Score=169.67 Aligned_cols=163 Identities=20% Similarity=0.334 Sum_probs=143.8
Q ss_pred EEcCCCchhhHHHHHHhcCCCCCC-CCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEe
Q 010673 289 LFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 367 (504)
Q Consensus 289 vvG~~~vGKSSLin~l~~~~~~~~-~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D 367 (504)
++|++++|||+|+-++..+.|-.. ...|.+.++..+.++.++.+.++.+||+.|++++++.. ..+++.+|+++++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--HAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--Hhhhcccceeeeeee
Confidence 689999999999999988877543 46799999999999999777888999999999999986 669999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHHHHHH
Q 010673 368 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNVFSRI 445 (504)
Q Consensus 368 ~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l 445 (504)
+.+..||++++.|+.++.++. ...+.+.+++||+|+..++.+.. +.+.+++.+++| +.++|||+ .|++-.|-.|
T Consensus 80 iankasfdn~~~wlsei~ey~---k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYA---KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cccchhHHHHHHHHHHHHHHH---HhhHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHHHH
Confidence 999999999999999999884 24678899999999987666655 899999999998 99999999 9999999999
Q ss_pred HHHHhCCCCCCC
Q 010673 446 IWAAEHPHLNIP 457 (504)
Q Consensus 446 ~~~~~~~~~~~~ 457 (504)
++.+...+...|
T Consensus 156 a~~l~k~~~~~~ 167 (192)
T KOG0083|consen 156 AEELKKLKMGAP 167 (192)
T ss_pred HHHHHHhccCCC
Confidence 998876555443
No 95
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-23 Score=174.42 Aligned_cols=162 Identities=14% Similarity=0.243 Sum_probs=140.3
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCC--------C-cEEEEEEecCChhhHhhhhhhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG--------G-NKKTLILQEIPEEGVKKILSNKE 354 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~--------~-~~~~li~d~~g~~~~~~~~~~~~ 354 (504)
.+|.+.+|++||||||++.+++.+.|......|.+.++..+.+-+.. + ...+.+||++|+++++++. ..
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT--TA 86 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT--TA 86 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH--HH
Confidence 45788899999999999999999999888888998888777665431 1 1234579999999999987 56
Q ss_pred hcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEec
Q 010673 355 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSa 433 (504)
++++|-+++++||+++..||-++.+|+.++..+.. +.+..||+++||+|+.+.+++.+ ++.++|.++++| ||++||
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY--cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfETSA 163 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY--CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFETSA 163 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc--cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeeecc
Confidence 89999999999999999999999999999987654 56788999999999999998877 999999999998 999999
Q ss_pred cc-cCHHHHHHHHHHHHh
Q 010673 434 KS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~ 450 (504)
-+ .||++..+.|...+.
T Consensus 164 ~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVM 181 (219)
T ss_pred ccCcCHHHHHHHHHHHHH
Confidence 99 999998888877654
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=3.3e-21 Score=174.52 Aligned_cols=161 Identities=21% Similarity=0.318 Sum_probs=130.5
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..++|+++|++|||||||+++++++.+...+.+|.+.++....+.+.+....+.+||++|+..+.... ..++..+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT--QSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence 45899999999999999999999888777777777766777677777434456678888887666654 4588999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...++... ..+.+.+....+ ++++||++ .|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~ 159 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYA---NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMY-YLETSAKESDNVEK 159 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEeeCCCCCCHHH
Confidence 99999999999999999998887652 23799999999999976655544 556677666654 89999999 99999
Q ss_pred HHHHHHHHH
Q 010673 441 VFSRIIWAA 449 (504)
Q Consensus 441 l~~~l~~~~ 449 (504)
+|+.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998754
No 97
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=3.6e-21 Score=171.45 Aligned_cols=156 Identities=23% Similarity=0.425 Sum_probs=130.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||++++.+..+...+.+|.+.++....+..++....+.+||.+|...+.... ..+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT--PSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH--HHHhcCCCEEEE
Confidence 489999999999999999999999988877888887777777777444556688888887766655 567899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-cchHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.... ...++..+++..++.+ ++++||++ .|+++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYA---PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEELF 154 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHHHH
Confidence 999999999999999999888762 2479999999999997333 3445788888888776 99999999 9999999
Q ss_pred HHHH
Q 010673 443 SRII 446 (504)
Q Consensus 443 ~~l~ 446 (504)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9986
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=5.9e-21 Score=175.09 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=121.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|.+|||||||++++..+.+. .+.||++..+ ..+... ...+.+||++|++.+..++ ..+++++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~--~~~~~i~D~~Gq~~~~~~~--~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLW--RHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEEC--CEEEEEEECCCCHHHHHHH--HHHhccCCE
Confidence 34589999999999999999999987775 4567777543 334443 3677889999998888777 558899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCC-------eEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEP-------PIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~vSak 434 (504)
+|+|||+++++++..+..++..+..... .+++|+++|+||+|+..... .+++.+.+++.. ++++||+
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~--~~~~piilv~NK~Dl~~~~~----~~~~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHh--hCCCCEEEEEECCCCCCCCC----HHHHHHHhCccccCCCceEEEeccCC
Confidence 9999999999999988877777653211 35799999999999876432 344555555541 4579999
Q ss_pred c-cCHHHHHHHHHHHHhC
Q 010673 435 S-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~~~ 451 (504)
+ +|++++|++|.+.+..
T Consensus 162 ~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 162 SGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 9 9999999999987654
No 99
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=6.1e-21 Score=172.54 Aligned_cols=159 Identities=24% Similarity=0.333 Sum_probs=120.0
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|.++.+...++++. ..+. ....+.+....+.+||++|...+...+ ..++..+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEIT-IPADVTPERVPTTIVDTSSRPQDRANL--AAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceE-eeeeecCCeEEEEEEeCCCchhhhHHH--hhhcccCCEEEE
Confidence 389999999999999999999998876554333 2232 223444455667789999886665544 346799999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc---hHHHHHHHHHhC-CCCeEEEeccc-cCH
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQELG-IEPPIPVSMKS-KDL 438 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~vSak~-~gi 438 (504)
|||++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+.... .+....+++.++ ..+++++||++ .|+
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~----~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRL----GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV 152 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence 99999999999975 687877765 348999999999999775543 123444444443 33589999999 999
Q ss_pred HHHHHHHHHHHhC
Q 010673 439 NNVFSRIIWAAEH 451 (504)
Q Consensus 439 ~el~~~l~~~~~~ 451 (504)
+++|+.+.+.+..
T Consensus 153 ~~lf~~~~~~~~~ 165 (166)
T cd01893 153 SEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=6.1e-21 Score=174.13 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=119.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+||+++|.+|||||||+++|..+.+. .+.||++..+. .+... ...+.+||++|++.+..++ ..+++++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~ad~ 83 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLW--RHYYTNTQG 83 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHH--HHHhCCCCE
Confidence 34589999999999999999999877764 45677776543 34433 3677889999988887776 558899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSak 434 (504)
+|+|||++++.+++.+..|+..+..... ..++|+++|+||+|+..... ..++...++.. .++++||+
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~ 157 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDE--LRDAVILVFANKQDLPDAMK----AAEITEKLGLHSIRDRNWYIQPTCAT 157 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHh--hcCCcEEEEEeCcCcccCCC----HHHHHHHhCccccCCCcEEEEEeeCC
Confidence 9999999999999998888887754311 34789999999999975432 12333333322 25689999
Q ss_pred c-cCHHHHHHHHHHHHh
Q 010673 435 S-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~~ 450 (504)
+ .|++++|++|.+.+.
T Consensus 158 ~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 158 SGDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 9 999999999987653
No 101
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=6.1e-21 Score=176.07 Aligned_cols=164 Identities=22% Similarity=0.334 Sum_probs=128.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
.||+|+|++|||||||+++|..+.+...+.+|....+.. .+.+++....+.+||++|.+.+.... ...+..+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEEYERLR--PLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECCEEEEEEEEECCCChhccccc--hhhcCCCCEEEE
Confidence 489999999999999999999888877676777665443 45666333445678988886665443 346789999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-----------cchHHHHHHHHHhCCCCeEEEe
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-----------MAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~vS 432 (504)
|||++++++|+.+. .|+..+... .+++|+++|+||+|+.... ........+++.++..++++||
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 154 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRY----CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS 154 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence 99999999999986 688888765 4579999999999985421 1134677889999876699999
Q ss_pred ccc-cCHHHHHHHHHHHHhCCCCC
Q 010673 433 MKS-KDLNNVFSRIIWAAEHPHLN 455 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~~~~~~ 455 (504)
|++ .|++++|+.+.+.+..-...
T Consensus 155 a~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 155 ALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CCCCCCHHHHHHHHHHHHhcccCc
Confidence 999 99999999999877544433
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=4.8e-21 Score=173.59 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=117.6
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
+..+||+++|.+|||||||+++|..+.+.. +.||++.++. .+.. ....+.+||++|.+.+..++ ..+++.+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~a~~ 79 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLW--RHYYTGTQG 79 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCE
Confidence 346899999999999999999999877653 5677776543 3333 34677889999998887776 458899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH---hCCC-CeEEEeccc-c
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE---LGIE-PPIPVSMKS-K 436 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~vSak~-~ 436 (504)
+|+|||++++.+|..+..|+..+..... ..++|+++|+||+|+.... ..+++++++.. .+.. .++++||++ .
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDRE--MRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHh--hcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 9999999999999998888877754311 2478999999999987532 22344443321 1111 378999999 9
Q ss_pred CHHHHHHHHHH
Q 010673 437 DLNNVFSRIIW 447 (504)
Q Consensus 437 gi~el~~~l~~ 447 (504)
|++++|++|.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=6.3e-21 Score=177.64 Aligned_cols=166 Identities=22% Similarity=0.284 Sum_probs=128.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+++|++|||||||+++|++..+...+.+|+.. .....+.+.+....+.+||++|...+..++ ..++..+|++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMR--KLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHH--HHHhhcCCEEEEE
Confidence 6899999999999999999999988777777764 444456676433556789999987776665 3478999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC-ccchH-HHHHHHH-HhCCCCeEEEeccc-cCHHHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQ-DSARVTQ-ELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~-~~~~~-~~~~~~~-~~~~~~~~~vSak~-~gi~el 441 (504)
||++++.+++.+..|+..+..... ..++|+++|+||+|+... ..... ...+... .++.+ ++++||++ .|++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l 154 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCG-FVETSAKDNENVLEV 154 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCc-EEEecCCCCCCHHHH
Confidence 999999999999999888876532 247999999999998653 32222 3333332 34444 89999999 999999
Q ss_pred HHHHHHHHhCCCCCCC
Q 010673 442 FSRIIWAAEHPHLNIP 457 (504)
Q Consensus 442 ~~~l~~~~~~~~~~~~ 457 (504)
|++|++.+..+....|
T Consensus 155 ~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 155 FKELLRQANLPYNLSP 170 (198)
T ss_pred HHHHHHHhhcccccch
Confidence 9999998865554444
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=1.1e-20 Score=173.19 Aligned_cols=163 Identities=18% Similarity=0.311 Sum_probs=130.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
.||+++|.+|||||||+++|.+..+...+.||+...+. ..+.+++....+.+||++|.+.+..++ ..++..+|++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIIRYKGQDYHLEIVDTAGQDEYSILP--QKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE-EEEEECCEEEEEEEEECCChHhhHHHH--HHHHhhCCEEEE
Confidence 58999999999999999999999887777787766543 345666334456789999987766555 457889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
|||+++..+++.+..|+..+.+... ..+.|+++|+||+|+...+.... ....+++.++.+ ++++||++ .|+.+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLG--KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEEAF 155 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHHHH
Confidence 9999999999999999888876421 34789999999999976544433 567778887865 89999999 9999999
Q ss_pred HHHHHHHhCCC
Q 010673 443 SRIIWAAEHPH 453 (504)
Q Consensus 443 ~~l~~~~~~~~ 453 (504)
++|.+.+....
T Consensus 156 ~~l~~~~~~~~ 166 (180)
T cd04137 156 ELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHhc
Confidence 99999875443
No 105
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=8.4e-21 Score=169.84 Aligned_cols=157 Identities=22% Similarity=0.343 Sum_probs=127.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+|+|++|||||||++++++..+...+.+++.. .....+...+....+.+||.+|...+.... ...++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTIVVDGETYTLDILDTAGQEEFSAMR--DLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHHhcCCEEEEE
Confidence 6899999999999999999998887777777774 344456665333456689999987766665 4578899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
||+++++++..+..|...+..... ....|+++|+||+|+...... .+.+..+++.++.+ ++++||++ .|++++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKD--DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FIETSAKDNINIDEVFK 154 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHH
Confidence 999999999999999888876532 247999999999999874444 34788888888865 99999999 99999999
Q ss_pred HHHHH
Q 010673 444 RIIWA 448 (504)
Q Consensus 444 ~l~~~ 448 (504)
.|.+.
T Consensus 155 ~l~~~ 159 (160)
T cd00876 155 LLVRE 159 (160)
T ss_pred HHHhh
Confidence 99875
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.86 E-value=4.8e-21 Score=171.98 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=113.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|||||||++++..+.+. .+.||++..+. .+... ...+.+||++|++.+..++ ..+++++|++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCEEEE
Confidence 48999999999999999999888776 46678775443 34433 4667889999998877776 458899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHH----HhCCCCeEEEeccc-cCHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSak~-~gi~ 439 (504)
|||++++.++..+..|+..+..... ..++|+++|+||+|+.......+....+.. ..+. .++++||++ .|++
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~ 150 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDE--LRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLY 150 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHH--hcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHH
Confidence 9999999999999888877754311 246899999999999653221122222211 0011 257899999 9999
Q ss_pred HHHHHHHH
Q 010673 440 NVFSRIIW 447 (504)
Q Consensus 440 el~~~l~~ 447 (504)
++|++|.+
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99999864
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=7.4e-21 Score=172.44 Aligned_cols=156 Identities=20% Similarity=0.347 Sum_probs=123.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|++|||||||+++|++..+...+.+|....+.. .+..++....+.+||++|++.+.... ...++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSA-TVTVDGKQVNLGLWDTAGQEEYDRLR--PLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCcccccccc--hhhcCCCCEEEE
Confidence 589999999999999999999999876666776654433 35555455567789999887665544 346789999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc------------hHHHHHHHHHhCCCCeEEE
Q 010673 365 VYDSSDEYSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA------------VQDSARVTQELGIEPPIPV 431 (504)
Q Consensus 365 V~D~s~~~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~~~~v 431 (504)
|||++++.+|.... .|+..+... ..++|+++|+||+|+...... .+...+++..++..+++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 153 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHY----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC 153 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence 99999999988764 577777665 447999999999998765532 3367778888888559999
Q ss_pred eccc-cCHHHHHHHHHH
Q 010673 432 SMKS-KDLNNVFSRIIW 447 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~ 447 (504)
||++ .|++++++.|++
T Consensus 154 Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 154 SALTQEGVKEVFEEAIR 170 (171)
T ss_pred ecCCCCCHHHHHHHHhh
Confidence 9999 999999999875
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=2.1e-20 Score=171.62 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=118.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
+..+||+++|++|||||||++++..+.+.. +.||++..+. .+... ...+.+||++|++.+..++ ..+++.+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLW--RHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCE
Confidence 445899999999999999999998877754 5677775443 34443 3677889999998887776 568899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSak 434 (504)
+|+|||++++.++..+..++..+..... ..++|+++|+||+|+...... .++...++.. .++++||+
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~----~~i~~~l~~~~~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDE--LRDAVLLVFANKQDLPNAMST----TEVTEKLGLHSVRQRNWYIQGCCAT 161 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHh--hcCCCEEEEEeCCCCCCCCCH----HHHHHHhCCCcccCCcEEEEeeeCC
Confidence 9999999999999988877777653211 347899999999998653321 2233333332 24689999
Q ss_pred c-cCHHHHHHHHHHHHh
Q 010673 435 S-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~~ 450 (504)
+ .|++++|++|.+.+.
T Consensus 162 tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 9 999999999998764
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=1.2e-20 Score=171.28 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=118.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+++|.+|||||||+++|.+..+.. +.||++..+. .+... ...+.+||++|...+...+ ..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~--~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLW--KHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHH--HHHhccCCEEEEE
Confidence 58999999999999999999987653 5677765443 34443 3677889999987776665 4578999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC----C-CeEEEeccc-cCHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI----E-PPIPVSMKS-KDLN 439 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~-~~~~vSak~-~gi~ 439 (504)
||++++.++..+..|+..+..... ..+.|+++|+||+|+... ...++..++++..+. . .++++||++ .||+
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKE--LRDALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChh--hCCCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHH
Confidence 999999999999999888875321 246899999999999653 223345555433221 1 367899999 9999
Q ss_pred HHHHHHHHHHh
Q 010673 440 NVFSRIIWAAE 450 (504)
Q Consensus 440 el~~~l~~~~~ 450 (504)
++|++|.+.+.
T Consensus 151 ~~f~~l~~~~~ 161 (169)
T cd04158 151 EGLDWLSRQLV 161 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=1.5e-20 Score=171.18 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=118.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
....++|+++|++|||||||+++|.+..+. .+.+|.+. ....+.++ ...+.+||++|++.+..++ ..+++.+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYW--RNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCC
Confidence 345689999999999999999999988553 44566663 33445554 3667889999998777766 45789999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH-----hCCCCeEEEeccc
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKS 435 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSak~ 435 (504)
++++|||++++.+|..+..|+..+..... ..++|+++|+||+|+.... ..++..++.+. .+. +++++||++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEER--LAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHW-RIQPCSAVT 159 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChh--hcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCce-EEEeccCCC
Confidence 99999999999999988888877754311 3589999999999997643 22334444322 223 489999999
Q ss_pred -cCHHHHHHHHHH
Q 010673 436 -KDLNNVFSRIIW 447 (504)
Q Consensus 436 -~gi~el~~~l~~ 447 (504)
.|++++|++|++
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 999999999864
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=1.5e-20 Score=174.49 Aligned_cols=148 Identities=19% Similarity=0.137 Sum_probs=120.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC-----CCcEEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~-----~~~~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
+||+++|+++||||||+++|+++.+...+.+|++..+..+.+.++ +....+.+||++|++.+..+. ..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~--~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR--AVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH--HHHhCcC
Confidence 589999999999999999999999988888899877777766664 233456689999998888776 5689999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhcc----------------CCCCCCcEEEEEECCCCCCCccchH-----HHHH
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGE----------------DSGYGVPCLLIASKDDLKPYTMAVQ-----DSAR 418 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~----------------~~~~~~piilV~NK~Dl~~~~~~~~-----~~~~ 418 (504)
|++|+|||++++.||+.+..|+.++..... ....++|+++||||+|+.+++.... ....
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999999999999999999975311 0124789999999999976543322 4557
Q ss_pred HHHHhCCCCeEEEeccc
Q 010673 419 VTQELGIEPPIPVSMKS 435 (504)
Q Consensus 419 ~~~~~~~~~~~~vSak~ 435 (504)
++++.+.+ .++.+|++
T Consensus 159 ia~~~~~~-~i~~~c~~ 174 (202)
T cd04102 159 VAEQGNAE-EINLNCTN 174 (202)
T ss_pred HHHhcCCc-eEEEecCC
Confidence 88999998 78888885
No 112
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=4.3e-20 Score=174.30 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=136.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
....+||+++|++|||||||+++++.+.+...+.+|.+..+....+..+++...+.+||++|++.+..++ ..++..++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCC
Confidence 3456899999999999999999999888888888898887777667666666777789999987776665 45788999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
++++|||++++.+|..+..|+..+... ..++|+++|+||+|+..... ......+++..++. ++++||++ .|++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~i~lv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV----CENIPIVLVGNKVDVKDRQV-KARQITFHRKKNLQ-YYDISAKSNYNFE 157 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEECccCccccC-CHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence 999999999999999999999998865 45799999999999865332 23334677777775 89999999 9999
Q ss_pred HHHHHHHHHHh-CCCC
Q 010673 440 NVFSRIIWAAE-HPHL 454 (504)
Q Consensus 440 el~~~l~~~~~-~~~~ 454 (504)
++|.+|++.+. .|..
T Consensus 158 ~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 158 KPFLWLARRLTNDPNL 173 (215)
T ss_pred HHHHHHHHHHhhcccc
Confidence 99999998774 4443
No 113
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=2.5e-20 Score=171.35 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=120.9
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCC-CcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~-~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
.+||+++|.+|||||||++++....+... .||.+.......+.+.+ ....+.+||++|.+.+..++ ..+++.+|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW--KSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHH--HHHhccCCEE
Confidence 57999999999999999999999887644 56766544444444432 33567789999988777776 4578999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC-----CCeEEEeccc-c
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI-----EPPIPVSMKS-K 436 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~vSak~-~ 436 (504)
++|||++++.++..+..|+..+..... ..++|+++|+||+|+..... ....+.+...... .+++++||++ .
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~--~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 156 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSE--NQGVPVLVLANKQDLPNALS-VSEVEKLLALHELSASTPWHVQPACAIIGE 156 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhh--cCCCcEEEEEECcCccccCC-HHHHHHHhCccccCCCCceEEEEeecccCC
Confidence 999999999999888888887765422 34799999999999865322 2233333321111 1368999999 9
Q ss_pred CHHHHHHHHHHHHhC
Q 010673 437 DLNNVFSRIIWAAEH 451 (504)
Q Consensus 437 gi~el~~~l~~~~~~ 451 (504)
|+++++++|.+.+..
T Consensus 157 gi~~l~~~l~~~l~~ 171 (183)
T cd04152 157 GLQEGLEKLYEMILK 171 (183)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988853
No 114
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-20 Score=155.66 Aligned_cols=162 Identities=19% Similarity=0.358 Sum_probs=145.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+|-+|+|+-|||||+|+.+|+.++|....+.|++..+..+.+++.+.+.++.+||+.|+++++.+. ..+++.+-+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravt--rsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH--HHHhccccc
Confidence 457899999999999999999999999999888899999999999999777788899999999999887 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
.+.|||++.+.++..+..|+...+... .++..+++++||.|+...+.+. ++.++|+++.|+. ++++|||+ .|++
T Consensus 87 almvyditrrstynhlsswl~dar~lt---npnt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve 162 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLT---NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE 162 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccC---CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence 999999999999999999999887653 4678899999999999887764 4899999999998 99999999 9999
Q ss_pred HHHHHHHHHH
Q 010673 440 NVFSRIIWAA 449 (504)
Q Consensus 440 el~~~l~~~~ 449 (504)
+.|-.-++.+
T Consensus 163 dafle~akki 172 (215)
T KOG0097|consen 163 DAFLETAKKI 172 (215)
T ss_pred HHHHHHHHHH
Confidence 9887766654
No 115
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.85 E-value=5.2e-21 Score=172.66 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=117.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
.|+++|++|||||||+++|.+..+...+.||.+... +.++.+...+.+||++|++.+..++ ..+++.+|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYW--KRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHH--HHHHhhCCEEEEE
Confidence 389999999999999999999888777778877532 2233345677889999988887776 4588999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-----HHHHHHHHhCCCCeEEEecc------
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-----DSARVTQELGIEPPIPVSMK------ 434 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~vSak------ 434 (504)
||++++.++..+..|+..+... ..++|+++|+||+|+........ ....++++.++. ++++||+
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~----~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s~~ 149 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQH----PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGSPS 149 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhC----CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCChh
Confidence 9999999999999998888654 35899999999999977554332 234555555554 6666655
Q ss_pred c-cCHHHHHHHHHH
Q 010673 435 S-KDLNNVFSRIIW 447 (504)
Q Consensus 435 ~-~gi~el~~~l~~ 447 (504)
+ +||+++|+.++.
T Consensus 150 ~~~~v~~~~~~~~~ 163 (164)
T cd04162 150 RMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHHhc
Confidence 4 689999988764
No 116
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.85 E-value=3.3e-21 Score=167.61 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=130.0
Q ss_pred ccCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 47 DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 47 ~~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
....|+++++++++++|.+||+|+||.|+..||..+++ .||.+++++++..|++.++. +.+.|+|++|+.++.
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~------~~~~idf~~Fl~~ms 82 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA------GNETVDFPEFLTVMS 82 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC------CCCccCHHHHHHHHH
Confidence 35789999999999999999999999999999999988 78999999999999999954 356799999999999
Q ss_pred HHHhcC-CchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 127 LFIEKG-RLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 127 ~~~~~~-~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
....++ ..|++..+|+.||.|++|+|+.++| . .+ +.|+.... +++..|++.+|.|+||.|+++||.+++
T Consensus 83 ~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~-vl-------~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 83 VKLKRGDKEEELREAFKLFDKDHDGYISIGELRR-VL-------KSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHhccCCcHHHHHHHHHHhCCCCCceecHHHHHH-HH-------HhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 888655 5689999999999999999999999 7 33 35665554 899999999999999999999999988
Q ss_pred ccCC
Q 010673 204 LTAP 207 (504)
Q Consensus 204 ~~~p 207 (504)
...|
T Consensus 155 ~~~~ 158 (160)
T COG5126 155 KDSP 158 (160)
T ss_pred hccC
Confidence 7654
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=4.2e-20 Score=165.96 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=113.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCC-CCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~-~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+|+++|++|||||||+++|++..+ ...+.||.+... ..+.. +...+.+||++|...+..++ ..+++.+|++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGLW--EHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHHH--HHHHccCCEEEE
Confidence 589999999999999999998764 445567776433 22332 34667799999998887776 457899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHH---HHhCCC-CeEEEeccc-cCHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT---QELGIE-PPIPVSMKS-KDLN 439 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~-~~~~vSak~-~gi~ 439 (504)
|+|++++.++..+..|+..+.........++|+++|+||+|+...... ....+.. ...+.+ .++++||++ .|++
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA-VKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH-HHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 999999999988888888776532111247999999999999764321 1111111 101111 378999999 9999
Q ss_pred HHHHHHHH
Q 010673 440 NVFSRIIW 447 (504)
Q Consensus 440 el~~~l~~ 447 (504)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 118
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.85 E-value=7.5e-21 Score=171.19 Aligned_cols=165 Identities=22% Similarity=0.387 Sum_probs=142.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEE-EEEEecCChhhHhhhhhhhhhcccccE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKK-TLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~-~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
..+|++|||+.+||||+|+..+..+.|...|.||.-+.+... +.+++|+.. +-+||++|++.+..++ .-.+.++|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrlR--plsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRLR--PLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCccccccc--ccCCCCCCE
Confidence 357999999999999999999999999999999999877765 777424444 5589999999887765 447899999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-------------cchHHHHHHHHHhCCCC
Q 010673 362 TIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-------------MAVQDSARVTQELGIEP 427 (504)
Q Consensus 362 iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~ 427 (504)
+++||++.++.||+++ .+|+.++..+ .++.|+|+||+|.||..+. ...++..+++++.|...
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~----cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHH----CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhh----CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence 9999999999999986 7899999988 6799999999999998432 11348889999999888
Q ss_pred eEEEeccc-cCHHHHHHHHHHHHhCCCC
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~~~~~~~ 454 (504)
|+++||++ .|++++|+..+..+..+..
T Consensus 156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 156 YLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999 9999999999999877654
No 119
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.84 E-value=9.8e-22 Score=169.16 Aligned_cols=161 Identities=17% Similarity=0.306 Sum_probs=146.6
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+|++|+|..+|||||+|++++.+-|...+..|++.++....+.+.+...+...||+.|++.+..+. ..+++.|.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt--kAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT--KAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH--HHHhccccc
Confidence 457899999999999999999999999999999999998888777777666677789999999988886 669999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
.++||+.+|+.||+.+.+|++.+... ...+|.++|-||+|+.++.+... +++.+++.++.. ++.+|++. .|+.
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e----~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~NV~ 170 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKE----TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFNVM 170 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHH----hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhhhH
Confidence 99999999999999999999999887 56999999999999999888766 899999999987 89999999 9999
Q ss_pred HHHHHHHHHH
Q 010673 440 NVFSRIIWAA 449 (504)
Q Consensus 440 el~~~l~~~~ 449 (504)
++|..|++.+
T Consensus 171 ~vF~YLaeK~ 180 (246)
T KOG4252|consen 171 HVFAYLAEKL 180 (246)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=5.3e-20 Score=167.77 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=115.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..++|+++|++|||||||+++++.+.+.. +.||.+..+. .+..+ ...+.+||++|.+.+...+ ..+++.+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSW--NTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHH--HHHhhcCCEE
Confidence 35799999999999999999999888764 4567766443 34444 3677889999987776666 4578999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHH----HHhCCCCeEEEeccc-cC
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSak~-~g 437 (504)
++|+|+++++++..+..++..+..... ..++|+++|+||+|+.......+..+.+. +..++ +++++||++ .|
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~--~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~g 163 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHED--LRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW-HIQGCCALTGEG 163 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchh--hcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce-EEEecccCCCCC
Confidence 999999999999888777777654321 24799999999999875322111122221 11222 379999999 99
Q ss_pred HHHHHHHHHH
Q 010673 438 LNNVFSRIIW 447 (504)
Q Consensus 438 i~el~~~l~~ 447 (504)
++++|++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=7.4e-20 Score=164.11 Aligned_cols=153 Identities=24% Similarity=0.296 Sum_probs=113.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
+|+++|++|||||||+++|.+..+... .||.+..+ ..+..+ +...+.+||++|...+...+ ..++..+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~--~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVW--KCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHH--HHHhccCCEEEEE
Confidence 589999999999999999999987643 46666433 345554 45677889999987776665 4578999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHH-----HHHHHhCCCCeEEEeccc-cCHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA-----RVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+|++++.++..+..|+..+.+... ..+.|+++|+||+|+.......+... .++...+. +++++||++ .|++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 151 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEH--IKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLA 151 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchh--hcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcE-EEEecccccCCChH
Confidence 999999999988888887764321 24799999999999865322111111 11111222 378999999 9999
Q ss_pred HHHHHHHH
Q 010673 440 NVFSRIIW 447 (504)
Q Consensus 440 el~~~l~~ 447 (504)
++|++|.+
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999864
No 122
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=1.4e-19 Score=186.84 Aligned_cols=209 Identities=18% Similarity=0.209 Sum_probs=141.2
Q ss_pred ccccccCCcccHHHHHHhhhhhhccCHHHHHHHH-HHhcCCCCh----------HHHHHHhhhhhhhhhhhcccCceEEE
Q 010673 219 AAETTALGNLTLKGFVSKWALMTLLDPRHSLANL-IYVGYGGDP----------AAALRVTRKRSVDRKKQQTERNVFRC 287 (504)
Q Consensus 219 ~~~~~~~g~i~~~~~l~~w~~~~~~~~~~~~~~l-~~lg~~~~~----------~~~l~~~~~~~~~~~~~~~~~~~~kI 287 (504)
.+..+..|.++ ..+..|.- .....++++ +.++|+++. ......++...... .++..++.++|
T Consensus 134 ~A~~~l~G~ls--~~~~~~r~----~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kV 206 (442)
T TIGR00450 134 IALNKLAGELD--QKIEAIRK----SLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSY-KLEKLDDGFKL 206 (442)
T ss_pred HHHHhcCcHHH--HHHHHHHH----HHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEE
Confidence 34445566655 33333332 222456777 889999752 11112222222222 33556788999
Q ss_pred EEEcCCCchhhHHHHHHhcCCCC--CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHh------hhhhhhhhcccc
Q 010673 288 LLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALASC 359 (504)
Q Consensus 288 ~vvG~~~vGKSSLin~l~~~~~~--~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~------~~~~~~~~~~~a 359 (504)
+++|++|||||||+|+|++.... ..+++|+.+ +....+.++ | ..+.+||++|..... .+..+..+++.+
T Consensus 207 vIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd-~~~~~i~~~-g-~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~a 283 (442)
T TIGR00450 207 AIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRD-VVEGDFELN-G-ILIKLLDTAGIREHADFVERLGIEKSFKAIKQA 283 (442)
T ss_pred EEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEE-EEEEEEEEC-C-EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhC
Confidence 99999999999999999998653 234445544 445567776 4 445789999974322 122345678999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccccCHH
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKSKDLN 439 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~~gi~ 439 (504)
|++++|||++++.+++.. |+..+.. .++|+++|+||+|+... ....+++.++.+ ++++||++.||+
T Consensus 284 D~il~V~D~s~~~s~~~~--~l~~~~~------~~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~vSak~~gI~ 349 (442)
T TIGR00450 284 DLVIYVLDASQPLTKDDF--LIIDLNK------SKKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSNLSAKQLKIK 349 (442)
T ss_pred CEEEEEEECCCCCChhHH--HHHHHhh------CCCCEEEEEECccCCCc-----chhhhhhhcCCc-eEEEEEecCCHH
Confidence 999999999999888765 6666543 37899999999999653 134556667765 899999999999
Q ss_pred HHHHHHHHHHhC
Q 010673 440 NVFSRIIWAAEH 451 (504)
Q Consensus 440 el~~~l~~~~~~ 451 (504)
++++.|.+.+..
T Consensus 350 ~~~~~L~~~i~~ 361 (442)
T TIGR00450 350 ALVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999999887743
No 123
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=1.6e-19 Score=176.17 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=126.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhhH-----hhhh-hhhhhcc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKIL-SNKEALA 357 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-----~~~~-~~~~~~~ 357 (504)
+|+++|.||||||||+|+|++.++...+ ++||+..+ ..+... +...+.+||++|.... ..+. .+..++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999999876543 34666532 234444 3356788999986321 1111 1345778
Q ss_pred cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-c
Q 010673 358 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-K 436 (504)
Q Consensus 358 ~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~ 436 (504)
.+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+............++...+..+++++||++ .
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 999999999999887764 4445555433 789999999999975444334556666666665689999999 9
Q ss_pred CHHHHHHHHHHHHhC-CCCCCCCcccccchhhHHhhhcch
Q 010673 437 DLNNVFSRIIWAAEH-PHLNIPETETGRNRKRYRHLVNSS 475 (504)
Q Consensus 437 gi~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~ 475 (504)
|++++++.|.+.+.. |..++++...+++.++.-.-+-|.
T Consensus 151 gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire 190 (270)
T TIGR00436 151 NTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIRE 190 (270)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHH
Confidence 999999999998854 444666667777776544433343
No 124
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-20 Score=167.38 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=123.8
Q ss_pred cchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHH
Q 010673 50 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 129 (504)
Q Consensus 50 ~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~ 129 (504)
.+++++..++++||.+||+|+||+|+..||..+++ .+|.+++++++..+++.++.+ ++|.|+|++|+.++....
T Consensus 1 ~~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr-~lg~~~t~~el~~~~~~~D~d-----g~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 1 ELSEEQILELKEAFQLFDKDGDGKISVEELGAVLR-SLGQNPTEEELRDLIKEIDLD-----GDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCC-----CCCeEcHHHHHHHHHhhh
Confidence 36788999999999999999999999999999977 679999999999999999887 577799999999988766
Q ss_pred hcCC-----chhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhh
Q 010673 130 EKGR-----LETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDL 202 (504)
Q Consensus 130 ~~~~-----~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l 202 (504)
.... .+++.++|+.||.|++|+|+.++| . .+ ..++.+.. +++..|++.+|.|+||.|+|+||.++
T Consensus 75 ~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~-~l-------~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~ 146 (151)
T KOG0027|consen 75 EEKTDEEASSEELKEAFRVFDKDGDGFISASELKK-VL-------TSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKM 146 (151)
T ss_pred cccccccccHHHHHHHHHHHccCCCCcCcHHHHHH-HH-------HHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHH
Confidence 5332 348999999999999999999999 6 33 34444444 88999999999999999999999999
Q ss_pred hcc
Q 010673 203 FLT 205 (504)
Q Consensus 203 ~~~ 205 (504)
+..
T Consensus 147 m~~ 149 (151)
T KOG0027|consen 147 MSG 149 (151)
T ss_pred Hhc
Confidence 864
No 125
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=179.83 Aligned_cols=213 Identities=19% Similarity=0.201 Sum_probs=152.1
Q ss_pred cccccccCCcccHHHHHHhhhhhhccCHHHHHHHH-HHhcCCCC-h------------HHHHHHhhhhhhhhhhhcccCc
Q 010673 218 DAAETTALGNLTLKGFVSKWALMTLLDPRHSLANL-IYVGYGGD-P------------AAALRVTRKRSVDRKKQQTERN 283 (504)
Q Consensus 218 ~~~~~~~~g~i~~~~~l~~w~~~~~~~~~~~~~~l-~~lg~~~~-~------------~~~l~~~~~~~~~~~~~~~~~~ 283 (504)
+.+..+..|.++ ..+..|.- .+ -..++++ ++++||++ . ......+.......++++..++
T Consensus 143 r~A~~~l~G~ls--~~i~~lr~-~l---i~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~ 216 (454)
T COG0486 143 RIALRQLQGALS--QLINELRE-AL---LELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILRE 216 (454)
T ss_pred HHHHHHcCCcHH--HHHHHHHH-HH---HHHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 345566677765 33333333 22 2456777 89999976 1 2334445566666788889999
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhh------Hhhhhhhhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEA 355 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~------~~~~~~~~~~ 355 (504)
+++++++|.||||||||+|.|++.+.+.++ ++||++.+.. .+.++ | ..+.++||+|... -.++.++...
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee-~i~i~-G-~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE-DINLN-G-IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEE-EEEEC-C-EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 999999999999999999999999998765 6788885544 57887 5 5566788888632 1456667888
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
+++||.|++|+|.+.+.+-.+ ...+. . . ..+.|+++|.||+|+..+..... + +..+-.+.+.+|+++
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d-~~~~~-~--~----~~~~~~i~v~NK~DL~~~~~~~~----~-~~~~~~~~i~iSa~t 360 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKED-LALIE-L--L----PKKKPIIVVLNKADLVSKIELES----E-KLANGDAIISISAKT 360 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhh-HHHHH-h--c----ccCCCEEEEEechhcccccccch----h-hccCCCceEEEEecC
Confidence 999999999999999743332 12222 1 1 34799999999999988554221 1 111112479999999
Q ss_pred -cCHHHHHHHHHHHHhCC
Q 010673 436 -KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 436 -~gi~el~~~l~~~~~~~ 452 (504)
.|++.|.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 99999999999988665
No 126
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=3.3e-19 Score=166.88 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=111.9
Q ss_pred cccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC--CCccceEEEEEEEcCCCcEEEEEEecCChhhH------hhhh
Q 010673 279 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKIL 350 (504)
Q Consensus 279 ~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~--~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~------~~~~ 350 (504)
+..+..++|+|+|++|||||||+|++++..+..... +|... ....+.++ +...+.+||++|.... ..+.
T Consensus 36 ~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ 112 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP--TTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFR 112 (204)
T ss_pred hhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc--eeEEEEec-CCceEEEeCCCccccCCCHHHHHHHH
Confidence 334667899999999999999999999987543322 23332 33345555 3346778999986211 1122
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEE
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 430 (504)
.....+..+|++++|+|++++.++.....|...+.... ..++|+++|+||+|+....... .+....+. ++++
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~---~~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~-~~~~ 184 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG---AEDIPMILVLNKIDLLDDEELE----ERLEAGRP-DAVF 184 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC---cCCCCEEEEEEccccCChHHHH----HHhhcCCC-ceEE
Confidence 22334678999999999999988887777766665432 2468999999999997643321 33344444 4899
Q ss_pred Eeccc-cCHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~ 448 (504)
+||++ .|+++++++|.+.
T Consensus 185 ~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 185 ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEcCCCCCHHHHHHHHHhh
Confidence 99999 9999999999765
No 127
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=1.2e-19 Score=164.21 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=117.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
+|+++|.+|||||||+++|.+. +...+.||.+.. ...+... ...+.+||++|++.+..++ ..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~--~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIW--VNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHH--HHHHcCCCEEEEE
Confidence 4899999999999999999987 656667787753 3345544 3677889999988888777 5688999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-----HHHHHHHHhCCC-CeEEEeccc----
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-----DSARVTQELGIE-PPIPVSMKS---- 435 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-----~~~~~~~~~~~~-~~~~vSak~---- 435 (504)
||++++.+++.+..|+..+..... ..++|+++|+||+|+.......+ ..+.+++..+.+ .++++||++
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPR--VSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCcc--ccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence 999999999999999998875421 35799999999999987553322 223344333333 367799998
Q ss_pred ---cCHHHHHHHHHH
Q 010673 436 ---KDLNNVFSRIIW 447 (504)
Q Consensus 436 ---~gi~el~~~l~~ 447 (504)
.|+++.|+||.+
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 479999999964
No 128
>PLN00023 GTP-binding protein; Provisional
Probab=99.83 E-value=1.8e-19 Score=175.02 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=119.5
Q ss_pred cccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCC-------------CcEEEEEEecCChhh
Q 010673 279 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEEG 345 (504)
Q Consensus 279 ~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~-------------~~~~~li~d~~g~~~ 345 (504)
......+||+|+|..|||||||+++|+++.+...+.+|++.++..+.+.+++ ....+.+||++|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3356679999999999999999999999999888889999888777676642 234566899999999
Q ss_pred HhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCC---------CCCCcEEEEEECCCCCCCc---c--
Q 010673 346 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDS---------GYGVPCLLIASKDDLKPYT---M-- 411 (504)
Q Consensus 346 ~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~---------~~~~piilV~NK~Dl~~~~---~-- 411 (504)
+..++ ..+++++|++|+|||++++.||+.+..|+..+....... ..++|++|||||+|+...+ .
T Consensus 96 frsL~--~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 96 YKDCR--SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhh--HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 98887 458999999999999999999999999999998753110 1358999999999997643 2
Q ss_pred --chHHHHHHHHHhCCC
Q 010673 412 --AVQDSARVTQELGIE 426 (504)
Q Consensus 412 --~~~~~~~~~~~~~~~ 426 (504)
..+++++||+++++.
T Consensus 174 ~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 174 GNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccHHHHHHHHHHcCCC
Confidence 245899999999865
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.82 E-value=4.6e-19 Score=163.04 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=115.3
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...++|+++|.+|||||||++++.+..+.. +.||.+... ..+.+. ...+.+||++|......++ ..++..+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~--~~~~~~ad~ 87 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLW--KDYFPEVNG 87 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence 345899999999999999999999987653 345555432 234443 3667789999987777776 458899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC--------------CC
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--------------EP 427 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~--------------~~ 427 (504)
+++|+|++++.++.....++..+.+... ..++|+++|+||+|+..... . +++.+.+++ ..
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~-~---~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEE--LATVPFLILGNKIDAPYAAS-E---DELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCCC-H---HHHHHHcCCCcccccccccCCceeE
Confidence 9999999999999888888777654311 35799999999999864322 1 223333322 13
Q ss_pred eEEEeccc-cCHHHHHHHHHHH
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~ 448 (504)
+++|||++ .|+++++++|.+.
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 79999999 9999999999764
No 130
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.82 E-value=2.8e-19 Score=185.80 Aligned_cols=185 Identities=19% Similarity=0.223 Sum_probs=128.7
Q ss_pred HHHHHH-HHhcCCCCh---------HH----HHHHhhhhhhhhhhhcccCceEEEEEEcCCCchhhHHHHHHhcCCCCC-
Q 010673 247 HSLANL-IYVGYGGDP---------AA----ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSE- 311 (504)
Q Consensus 247 ~~~~~l-~~lg~~~~~---------~~----~l~~~~~~~~~~~~~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~- 311 (504)
..++.+ ++++|+++. .. ....++.....++.++..+..++|+++|.+|||||||+|+|++.+...
T Consensus 164 ~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v 243 (449)
T PRK05291 164 ELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIV 243 (449)
T ss_pred HHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCccc
Confidence 455666 789999752 11 222223333334445556778999999999999999999999987532
Q ss_pred -CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhh------hhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHH
Q 010673 312 -NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEV 384 (504)
Q Consensus 312 -~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~------~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l 384 (504)
...+|+.+ +....+.++ | ..+.+||++|...... +.++..++..+|++++|+|++++.+++....|..
T Consensus 244 ~~~~gtT~d-~~~~~i~~~-g-~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-- 318 (449)
T PRK05291 244 TDIAGTTRD-VIEEHINLD-G-IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-- 318 (449)
T ss_pred CCCCCcccc-cEEEEEEEC-C-eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--
Confidence 33445554 444456665 4 4567899999743321 2334567899999999999999988876544432
Q ss_pred HHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 385 ARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 385 ~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
..+.|+++|+||+|+....... ...+. +++++||++ .|+++++++|.+.+..
T Consensus 319 -------~~~~piiiV~NK~DL~~~~~~~-------~~~~~-~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 319 -------LKDKPVIVVLNKADLTGEIDLE-------EENGK-PVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred -------cCCCCcEEEEEhhhccccchhh-------hccCC-ceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 2378999999999997643221 22233 489999999 9999999999998753
No 131
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=6.1e-19 Score=157.99 Aligned_cols=152 Identities=21% Similarity=0.210 Sum_probs=109.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+++|++|||||||++++..+.+.. +.||++..+. .+... ...+.+||++|.+.+..++ ..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYW--RCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHH--HHHhcCCCEEEEE
Confidence 68999999999999999998877653 4566665432 34433 3567889999988777776 4588999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHH----HhCCCCeEEEeccc-cCHHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ----ELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~vSak~-~gi~e 440 (504)
+|++++.++.....++..+.+... ..++|+++|+||+|+.......+....+.. ..+. +++++||++ .|+++
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTW-SIFKTSAIKGEGLDE 150 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcE-EEEEeeccCCCCHHH
Confidence 999999888776666655433211 247999999999998754321111111211 0112 389999999 99999
Q ss_pred HHHHHHH
Q 010673 441 VFSRIIW 447 (504)
Q Consensus 441 l~~~l~~ 447 (504)
+|++|++
T Consensus 151 l~~~l~~ 157 (158)
T cd04151 151 GMDWLVN 157 (158)
T ss_pred HHHHHhc
Confidence 9999875
No 132
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=6.8e-19 Score=162.72 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=117.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...++|+++|++|||||||++++.+..+. .+.||.+... ..+.++ + ..+.+||++|...+...+ ..+++.+|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~-~-~~~~l~D~~G~~~~~~~~--~~~~~~ad~ 89 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG-N-IKFKTFDLGGHEQARRLW--KDYFPEVDG 89 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC-C-EEEEEEECCCCHHHHHHH--HHHhccCCE
Confidence 34689999999999999999999988774 4556666533 345555 3 566789999987776665 457899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC---------------C
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI---------------E 426 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~---------------~ 426 (504)
+++|+|++++.++.....|+..+..... ..+.|+++|+||+|+... ...++.+++...... .
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSDEE--LANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCcc--ccCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeE
Confidence 9999999999999888888887765321 347999999999998652 223344444432111 1
Q ss_pred CeEEEeccc-cCHHHHHHHHHHH
Q 010673 427 PPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 427 ~~~~vSak~-~gi~el~~~l~~~ 448 (504)
.+++|||++ .|++++|++|.+.
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhh
Confidence 379999999 9999999999875
No 133
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=7.5e-19 Score=157.26 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=114.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 365 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV 365 (504)
||+++|.+|||||||++++++..+. .+.+|.+..+ ..+.+. ...+.+||++|...+...+ ..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLW--KHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHH--HHHhccCCEEEEE
Confidence 6899999999999999999998843 3445665433 334444 3667789999987777666 4588999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH-----hCCCCeEEEeccc-cCHH
Q 010673 366 YDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE-----LGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 366 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSak~-~gi~ 439 (504)
||++++.++..+..|+..+..... ..+.|+++|+||+|+.......+ ..+.... ... +++++||++ .|++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 149 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEE--LKGVPLLIFANKQDLPGALSVSE-LIEKLGLEKILGRRW-HIQPCSAVTGDGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcc--cCCCcEEEEeeccCCccccCHHH-HHHhhChhhccCCcE-EEEEeeCCCCCCHH
Confidence 999999999998888887765422 35899999999999986542222 2222221 122 489999999 9999
Q ss_pred HHHHHHHH
Q 010673 440 NVFSRIIW 447 (504)
Q Consensus 440 el~~~l~~ 447 (504)
++|++|..
T Consensus 150 ~~~~~l~~ 157 (158)
T cd00878 150 EGLDWLLQ 157 (158)
T ss_pred HHHHHHhh
Confidence 99999875
No 134
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=2.8e-19 Score=157.13 Aligned_cols=134 Identities=17% Similarity=0.199 Sum_probs=98.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChh-----hHhhhhhhhhhccccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKILSNKEALASCD 360 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~-----~~~~~~~~~~~~~~ad 360 (504)
||+++|++|||||||+|+|++..+. +.+|.+. .+. + .+||++|.. .+..+ ...++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-~----~~iDt~G~~~~~~~~~~~~---~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-D----GAIDTPGEYVENRRLYSAL---IVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-C----eeecCchhhhhhHHHHHHH---HHHhhcCC
Confidence 7999999999999999999988753 3344432 222 1 467777762 22222 23578999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
++++|||++++.++.. ..|...+ ..|+++|+||+|+.+.....+..+++++..+..+++++||++ .|++
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~~---------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASIF---------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHhc---------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 9999999999998755 3343321 349999999999976444445677888888875689999999 9999
Q ss_pred HHHHHHH
Q 010673 440 NVFSRII 446 (504)
Q Consensus 440 el~~~l~ 446 (504)
++|++|.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 135
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=6.2e-19 Score=159.28 Aligned_cols=153 Identities=25% Similarity=0.351 Sum_probs=111.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCC------CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFS------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~------~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
+|+|+|++|||||||+++|++.... ..+.+|.+..+ ..+.++ ...+.+||++|+..+..++ ..++..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLW--DKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHH--HHHhCCC
Confidence 5899999999999999999864321 22344555433 234554 3677889999987777665 4578999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh----CCC--CeEEEec
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL----GIE--PPIPVSM 433 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~----~~~--~~~~vSa 433 (504)
|++++|+|++++.++.....|+..+.+... ..++|+++|+||+|+..... ..+..++.+.. +.. +++++||
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEA--LEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChh--hcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCceEEEEeeC
Confidence 999999999999889888888887765321 34799999999999876432 22333333221 111 4899999
Q ss_pred cc-cCHHHHHHHHHH
Q 010673 434 KS-KDLNNVFSRIIW 447 (504)
Q Consensus 434 k~-~gi~el~~~l~~ 447 (504)
++ .|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 99 999999999864
No 136
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.7e-19 Score=152.73 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=133.3
Q ss_pred ccccccCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHH
Q 010673 43 LFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 122 (504)
Q Consensus 43 l~~~~~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl 122 (504)
.+......+++++.+.++++|.+||.|++|+|+.+||+..++ |+|..+..+|+..|+..++++ +.|.|+|++|.
T Consensus 19 ~~~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~-----~~g~i~fe~f~ 92 (172)
T KOG0028|consen 19 KPASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKE-----GSGKITFEDFR 92 (172)
T ss_pred ccCCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhc-----cCceechHHHH
Confidence 344557889999999999999999999999999999988866 899999999999999999887 46779999999
Q ss_pred HHHHHHHh-cCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHH
Q 010673 123 FLHALFIE-KGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAEL 199 (504)
Q Consensus 123 ~l~~~~~~-~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~ 199 (504)
.++...+. ++..|++..+||.||-|++|.|+..+| . . ..+||+... ++|.+|++.+|+|+||.|+.+||
T Consensus 93 ~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkr-v-------akeLgenltD~El~eMIeEAd~d~dgevneeEF 164 (172)
T KOG0028|consen 93 RVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKR-V-------AKELGENLTDEELMEMIEEADRDGDGEVNEEEF 164 (172)
T ss_pred HHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHH-H-------HHHhCccccHHHHHHHHHHhcccccccccHHHH
Confidence 99877665 567799999999999999999999999 6 2 258888776 89999999999999999999999
Q ss_pred hhhhccC
Q 010673 200 EDLFLTA 206 (504)
Q Consensus 200 ~~l~~~~ 206 (504)
-.++..+
T Consensus 165 ~~imk~t 171 (172)
T KOG0028|consen 165 IRIMKKT 171 (172)
T ss_pred HHHHhcC
Confidence 9988754
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=1.1e-18 Score=158.04 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=111.7
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCcEEEEEEecCChhh----Hhhhhh-hhhhcccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASC 359 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~----~~~~~~-~~~~~~~a 359 (504)
+|+++|.+|||||||+|+|.+....... +.++.. .....+.+. +...+.+||++|... ...+.. ....+..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~-~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLV-PNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccC-CcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 5899999999999999999987643222 222221 122234444 334678899999621 111111 12345679
Q ss_pred cEEEEEEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh-CCCCeEEEeccc-c
Q 010673 360 DVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-GIEPPIPVSMKS-K 436 (504)
Q Consensus 360 d~iilV~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSak~-~ 436 (504)
|++++|+|++++ ++++.+..|.+.+..... ...++|+++|+||+|+............+.... +.+ ++++||++ .
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 157 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKP-VFPISALTGE 157 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCC-EEEEecCCCC
Confidence 999999999999 789998899888876521 124789999999999977655545555566653 444 89999999 9
Q ss_pred CHHHHHHHHHHH
Q 010673 437 DLNNVFSRIIWA 448 (504)
Q Consensus 437 gi~el~~~l~~~ 448 (504)
|+++++++|.++
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=1.8e-18 Score=156.43 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=106.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCcEEEEEEecCChhhHh-----hh-hhhh-hhc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-----KI-LSNK-EAL 356 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~-----~~-~~~~-~~~ 356 (504)
.+|+++|.+|||||||+|+|++..+.... ..++.. .....+... ...+.+||++|..... .+ .... ...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS-LFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc-eeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 37999999999999999999998875432 222222 233333333 3577889999873210 00 0001 111
Q ss_pred ccccEEEEEEeCCCcccH--HHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEecc
Q 010673 357 ASCDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMK 434 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~--~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak 434 (504)
..+|++++|+|++++.++ +....|+..+... ..+.|+++|+||+|+.......+ ..++....+.+ ++++||+
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~Sa~ 151 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL----FKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEE-VLKISTL 151 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhh----cCcCCeEEEEEccccCchhhHHH-HHHhhhhccCc-eEEEEec
Confidence 236899999999987654 5666788877654 34799999999999976544332 44555544444 8999999
Q ss_pred c-cCHHHHHHHHHHHH
Q 010673 435 S-KDLNNVFSRIIWAA 449 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~ 449 (504)
+ .|+++++++|.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9 99999999998865
No 139
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.80 E-value=1.8e-18 Score=158.22 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=110.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcCC-------CCCCCCCC------ccceEEEEEEE--c---CCCcEEEEEEecCChhhHh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERP-------FSENYAPT------TGEQYAVNVVD--Q---PGGNKKTLILQEIPEEGVK 347 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~-------~~~~~~~T------~~~~~~~~~v~--~---~~~~~~~li~d~~g~~~~~ 347 (504)
+|+++|++|||||||+++|++.. +...+.++ .+.++....+. + ++....+.+||++|++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999743 11122222 12223322222 2 3344566789999998876
Q ss_pred hhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-
Q 010673 348 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE- 426 (504)
Q Consensus 348 ~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~- 426 (504)
... ..+++.+|++|+|||+++..++.....|.... . .++|+++|+||+|+.... .....+++++.++++
T Consensus 82 ~~~--~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 82 YEV--SRSLAACEGALLLVDATQGVEAQTLANFYLAL-E------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDP 151 (179)
T ss_pred HHH--HHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCc
Confidence 665 45789999999999999987777666554332 2 278999999999986532 223456777777764
Q ss_pred -CeEEEeccc-cCHHHHHHHHHHHH
Q 010673 427 -PPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 427 -~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
.++++||++ .|+++++++|.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 489999999 99999999998875
No 140
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=1.6e-18 Score=154.41 Aligned_cols=152 Identities=20% Similarity=0.273 Sum_probs=114.9
Q ss_pred EEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEE
Q 010673 287 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 366 (504)
Q Consensus 287 I~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~ 366 (504)
|+++|++|||||||+++|.+.++...+.||.+..+. .+..+ ...+.+||++|...+...+ ..++..+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMW--ERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHH--HHHHhcCCEEEEEE
Confidence 799999999999999999999998888888876543 24433 3667789999987777665 45789999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHH----HHhCCCCeEEEeccc-cCHHHH
Q 010673 367 DSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT----QELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 367 D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~vSak~-~gi~el 441 (504)
|++++.++.....|+..+..... ..++|+++|+||+|+............+. ...+. +++++|+++ .|++++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPS--LEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREV-SCYSISCKEKTNIDIV 152 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCce-EEEEEEeccCCChHHH
Confidence 99999888888777777654311 24789999999999876443222111111 01112 379999999 999999
Q ss_pred HHHHHH
Q 010673 442 FSRIIW 447 (504)
Q Consensus 442 ~~~l~~ 447 (504)
+++|.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04159 153 LDWLIK 158 (159)
T ss_pred HHHHhh
Confidence 999875
No 141
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=162.97 Aligned_cols=186 Identities=17% Similarity=0.205 Sum_probs=138.5
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCC--CCccceEEEEEEEcCCCcEEEEEEecCChhhH-----hhhh-hhhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKIL-SNKEA 355 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~--~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-----~~~~-~~~~~ 355 (504)
.--|+|+|.||||||||+|+++|.+.+.+++ .||+. .+..+... +..+.+++||||-... +.+. .+...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~--~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh--heeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3468999999999999999999999988773 36665 34445555 4688899999986432 1221 13567
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-hHHHHHHHHHhCCCCeEEEecc
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-VQDSARVTQELGIEPPIPVSMK 434 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSak 434 (504)
+..+|+++||+|++++..-.+ ...++.+... +.|++++.||+|...+... ....+.+.....+...+++||+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGD-EFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred hccCcEEEEEEeccccCCccH-HHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecc
Confidence 899999999999998644322 4445555432 6899999999999887663 3456666667777789999999
Q ss_pred c-cCHHHHHHHHHHHH-hCCCCCCCCcccccchhhHHhhhcchhhhh
Q 010673 435 S-KDLNNVFSRIIWAA-EHPHLNIPETETGRNRKRYRHLVNSSLVFV 479 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 479 (504)
+ .|++.|.+.+...+ ..|..++++.-.+++.+..-.-+-|.+.+.
T Consensus 156 ~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~ 202 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLL 202 (298)
T ss_pred ccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHH
Confidence 9 99999999999998 566777778888888886555555554443
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.7e-18 Score=170.12 Aligned_cols=167 Identities=17% Similarity=0.075 Sum_probs=120.0
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCC-CccceEEEEEEEcCCCcEEEEEEecCChhh----Hhhhh-hhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKIL-SNKE 354 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~-T~~~~~~~~~v~~~~~~~~~li~d~~g~~~----~~~~~-~~~~ 354 (504)
.+-...|++||.||||||||+|+|++........| ||.. .....+.+. ....+.+||.+|... ...+. ....
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~-p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flr 232 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLH-PNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLK 232 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeC-ceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHH
Confidence 45566899999999999999999998765433323 3332 333345554 335577888887521 11121 1245
Q ss_pred hcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEec
Q 010673 355 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSa 433 (504)
+++.++++++|+|++++++++.+..|..++..+.. ...++|+++|+||+|+........ ..+.+++..+.+ ++++||
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iSA 310 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP-ELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLISA 310 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-hcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEEc
Confidence 67889999999999998889999999998876521 124789999999999976544332 444555556655 899999
Q ss_pred cc-cCHHHHHHHHHHHHhC
Q 010673 434 KS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~~ 451 (504)
++ .|+++++++|.+.+..
T Consensus 311 ktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 311 VTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 99 9999999999988753
No 143
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=5.6e-18 Score=154.00 Aligned_cols=153 Identities=24% Similarity=0.332 Sum_probs=114.5
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
.+.++|+++|++|||||||++++.+..+.. +.+|.+. ....+... + ..+.+||++|...+...+ ..+++.+|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~--~~~~i~~~-~-~~~~~~D~~G~~~~~~~~--~~~~~~~~~ 84 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGF--NIKTVQSD-G-FKLNVWDIGGQRAIRPYW--RNYFENTDC 84 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCc--ceEEEEEC-C-EEEEEEECCCCHHHHHHH--HHHhcCCCE
Confidence 347899999999999999999999987643 4456553 33345555 3 566788998886666555 457789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSak 434 (504)
+++|+|+++..++.....++..+.+... ..++|+++++||+|+..... .+++.+.+++. +++++||+
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEK--LAGVPVLVFANKQDLATAAP----AEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChh--hcCCCEEEEEECCCCccCCC----HHHHHHHcCCcccCCCeEEEEEeECC
Confidence 9999999999888887777766654321 24799999999999876432 23344445543 25799999
Q ss_pred c-cCHHHHHHHHHH
Q 010673 435 S-KDLNNVFSRIIW 447 (504)
Q Consensus 435 ~-~gi~el~~~l~~ 447 (504)
+ .|++++|++|++
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 9 999999999975
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=1.2e-18 Score=153.32 Aligned_cols=149 Identities=20% Similarity=0.282 Sum_probs=106.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhh------Hhhhhhhhhhccc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEALAS 358 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~------~~~~~~~~~~~~~ 358 (504)
++|+++|.||||||||+|+|++.+......|.+..+.....+.+. + ..+.++|.||.-. .+.+....-...+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~-~-~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG-D-QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET-T-EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec-C-ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999999998654444433334555566666 3 6777888888411 2222211112368
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cC
Q 010673 359 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 359 ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~g 437 (504)
.|++++|+|+++. +.-..+..++.+. ++|+++|+||+|+..........+.+.+.+++| ++++||++ .|
T Consensus 79 ~D~ii~VvDa~~l---~r~l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~~~~g 148 (156)
T PF02421_consen 79 PDLIIVVVDATNL---ERNLYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSARTGEG 148 (156)
T ss_dssp SSEEEEEEEGGGH---HHHHHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTTBT
T ss_pred CCEEEEECCCCCH---HHHHHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeCCCcC
Confidence 9999999999874 3334556666655 899999999999887665555788999999998 99999999 99
Q ss_pred HHHHHHHH
Q 010673 438 LNNVFSRI 445 (504)
Q Consensus 438 i~el~~~l 445 (504)
+++|++.|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 145
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.78 E-value=5.4e-19 Score=137.60 Aligned_cols=86 Identities=65% Similarity=1.090 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCC
Q 010673 89 APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQ 167 (504)
Q Consensus 89 ~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~ 167 (504)
.+++.+|+.++++.+.+.+++++.++|||++||+.|++.|+++|++|++|.++|+|+||+++.+.+++| | .+++++++
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p-~l~v~~~~ 80 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYP-KLDVPPDQ 80 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCC-CccCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999 9 99999999
Q ss_pred ccccChhH
Q 010673 168 SVELASEA 175 (504)
Q Consensus 168 ~~~l~~~~ 175 (504)
+++||+.+
T Consensus 81 svELS~~g 88 (89)
T PF08356_consen 81 SVELSPEG 88 (89)
T ss_pred eeecCcCc
Confidence 99999875
No 146
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.77 E-value=1.2e-17 Score=142.47 Aligned_cols=160 Identities=22% Similarity=0.284 Sum_probs=126.6
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
+..++|.++|..|+|||+++++|.+.. .....||.+ |..+++.++ + ....+||-.|+...++.| ..|+..+|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~-~-~~L~iwDvGGq~~lr~~W--~nYfestdg 86 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYK-G-YTLNIWDVGGQKTLRSYW--KNYFESTDG 86 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEec-c-eEEEEEEcCCcchhHHHH--HHhhhccCe
Confidence 348999999999999999999999887 334457777 567777776 3 666778877887789999 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc---h--HHHHHHHHHhCCCCeEEEeccc-
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---V--QDSARVTQELGIEPPIPVSMKS- 435 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---~--~~~~~~~~~~~~~~~~~vSak~- 435 (504)
+|+|+|++|+..+++....+..+... ....+.|+++++||.|+...-.. . ...+++++...++ .+.||+.+
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~e--erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~tg 163 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVE--ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR-LVKCSAVTG 163 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhh--hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce-EEEEecccc
Confidence 99999999999998877777666542 12457999999999999843221 1 1556666777776 89999999
Q ss_pred cCHHHHHHHHHHHHhC
Q 010673 436 KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~ 451 (504)
+++.+-+++|+..+..
T Consensus 164 e~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987754
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=1.8e-17 Score=166.31 Aligned_cols=186 Identities=18% Similarity=0.230 Sum_probs=128.3
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhhH-h----hhh-hhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-K----KIL-SNK 353 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-~----~~~-~~~ 353 (504)
...++|+++|.+|||||||+|+|++..+.... ..|+.. .....+..+ + ..+.+||++|.... . .+. .+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~-~~~~~~~~~-~-~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRS-IITGIITLK-D-TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccC-cEEEEEEeC-C-eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 35579999999999999999999998876433 234443 233345555 3 46789999997321 1 111 123
Q ss_pred hhcccccEEEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhC-CCCeEEE
Q 010673 354 EALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-IEPPIPV 431 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v 431 (504)
..+..+|++++|+|.++ ++... ..|+..+... +.|+++|+||+|+... ......+++...+ ...++++
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence 45789999999999766 34444 3455555433 5688899999998653 2334555555443 2358999
Q ss_pred eccc-cCHHHHHHHHHHHH-hCCCCCCCCcccccchhhHHhhhcchhhhhh
Q 010673 432 SMKS-KDLNNVFSRIIWAA-EHPHLNIPETETGRNRKRYRHLVNSSLVFVS 480 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 480 (504)
||++ .|+++++++|.+.+ ..|..++++...+++.+++-.-+-|.+.+-.
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~ 247 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLN 247 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999 99999999999987 5677778888888888866555555544443
No 148
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.77 E-value=2.2e-17 Score=150.46 Aligned_cols=159 Identities=24% Similarity=0.294 Sum_probs=120.6
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
.+..++|+++|.+|||||||++++..+.... ..||.+. ....+.+. + ..+.+||-.|+..++.+| ..++.++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~--~~~~i~~~-~-~~~~~~d~gG~~~~~~~w--~~y~~~~~ 83 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF--NIEEIKYK-G-YSLTIWDLGGQESFRPLW--KSYFQNAD 83 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE--EEEEEEET-T-EEEEEEEESSSGGGGGGG--GGGHTTES
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc--ccceeeeC-c-EEEEEEeccccccccccc--eeeccccc
Confidence 3678999999999999999999999875443 5567764 44556665 3 566788888887788888 45899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC----C-CeEEEeccc
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI----E-PPIPVSMKS 435 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~-~~~~vSak~ 435 (504)
++|||+|+++++.+......+..+..... ..++|+++++||+|+...... .++........+ + .++.+||++
T Consensus 84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~~--~~~~piLIl~NK~D~~~~~~~-~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 84 GIIFVVDSSDPERLQEAKEELKELLNDPE--LKDIPILILANKQDLPDAMSE-EEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp EEEEEEETTGGGGHHHHHHHHHHHHTSGG--GTTSEEEEEEESTTSTTSSTH-HHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred eeEEEEecccceeecccccchhhhcchhh--cccceEEEEeccccccCcchh-hHHHhhhhhhhcccCCceEEEeeeccC
Confidence 99999999999999988888888765432 458999999999998764332 222222211111 1 368899999
Q ss_pred -cCHHHHHHHHHHHH
Q 010673 436 -KDLNNVFSRIIWAA 449 (504)
Q Consensus 436 -~gi~el~~~l~~~~ 449 (504)
+|+.+.++||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 99999999998864
No 149
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=1.5e-17 Score=165.68 Aligned_cols=165 Identities=16% Similarity=0.081 Sum_probs=118.1
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCC-CccceEEEEEEEcCCCcEEEEEEecCChhhH----hhhh-hhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL-SNKE 354 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~-T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~~~-~~~~ 354 (504)
.+-...|+|+|.||||||||+++|++........| |+. ......+.++ +...+.+||++|.... ..+. ....
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~-~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL-VPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-CCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 45567899999999999999999998765433222 332 2233345555 3366778899886321 1111 1134
Q ss_pred hcccccEEEEEEeCCCc---ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEE
Q 010673 355 ALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV 431 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 431 (504)
.+..+|++++|+|+++. ++++.+..|.+++..+.. ...++|+++|+||+|+.......+..+++++.++.+ ++++
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~i 309 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPI 309 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEE
Confidence 56789999999999987 677888888887765521 134789999999999977544334566677777765 9999
Q ss_pred eccc-cCHHHHHHHHHHHH
Q 010673 432 SMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~ 449 (504)
||++ .|++++++.|.+.+
T Consensus 310 SAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 310 SALTGEGLDELLYALAELL 328 (329)
T ss_pred EccCCcCHHHHHHHHHHHh
Confidence 9999 99999999998764
No 150
>PTZ00099 rab6; Provisional
Probab=99.76 E-value=2.1e-17 Score=150.50 Aligned_cols=140 Identities=18% Similarity=0.282 Sum_probs=117.0
Q ss_pred CCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHH
Q 010673 307 RPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVAR 386 (504)
Q Consensus 307 ~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~ 386 (504)
+.|...+.||++.++..+.+.++++...+.+||++|++.+..++ ..+++.||++|+|||++++.||+.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~--~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI--PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhcc--HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35667788999988888878888666677889999998888776 5688999999999999999999999999998876
Q ss_pred hccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHhCC
Q 010673 387 LGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 387 ~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~~~ 452 (504)
.. ..++|+++|+||+|+...+.+. .+...+++.++.. ++++||++ .||+++|++|++.+...
T Consensus 81 ~~---~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 81 ER---GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred hc---CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 52 3478999999999997644443 3777888888876 89999999 99999999999988543
No 151
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.76 E-value=2.4e-17 Score=148.09 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=98.9
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCC---CCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPF---SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~---~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
.|+++|++|||||||+++|++... .....+++........+.+.+ ...+.+||++|++.+.... ..++..+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~--~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNM--LAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHH--HhhhhcCCEE
Confidence 589999999999999999997532 222223333333333455542 3567789999987764433 4567899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc---hHHHHHHHHH---hCCCCeEEEeccc-
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA---VQDSARVTQE---LGIEPPIPVSMKS- 435 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~~~~---~~~~~~~~vSak~- 435 (504)
++|+|+++... ......+..+... ...|+++|+||+|+...... ..+..++.+. .+. +++++||++
T Consensus 79 i~V~d~~~~~~-~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (164)
T cd04171 79 LLVVAADEGIM-PQTREHLEILELL-----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADA-PIFPVSAVTG 151 (164)
T ss_pred EEEEECCCCcc-HhHHHHHHHHHHh-----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCC-cEEEEeCCCC
Confidence 99999987321 1112222222221 13499999999999764321 1233344443 234 499999999
Q ss_pred cCHHHHHHHHHH
Q 010673 436 KDLNNVFSRIIW 447 (504)
Q Consensus 436 ~gi~el~~~l~~ 447 (504)
.|++++++.|.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 152
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=4e-17 Score=161.45 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=120.0
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhhHhh-----h-hhhhhhc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEAL 356 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~-----~-~~~~~~~ 356 (504)
-.|+|+|.||||||||+|+|++......+ ..|++... ..+... +...+.++|++|...... + ......+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i--~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI--RGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE--EEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45999999999999999999999876544 23444322 223333 336788899998633211 1 1124467
Q ss_pred ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC-ccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 357 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY-TMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
..+|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+... .+.....+.+.+.++..+++++||++
T Consensus 83 ~~~D~il~vvd~~~~~~~~-~~~i~~~l~~------~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPG-DEFILEKLKK------VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred hcCCEEEEEEeCCCCCChh-HHHHHHHHhh------cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 8999999999999843321 1333333432 26899999999999843 33334667777767766789999999
Q ss_pred -cCHHHHHHHHHHHHh-CCCCCCCCcccccchhhH
Q 010673 436 -KDLNNVFSRIIWAAE-HPHLNIPETETGRNRKRY 468 (504)
Q Consensus 436 -~gi~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 468 (504)
.|++++++.|.+.+. .|..+.++...+.+.+..
T Consensus 156 ~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~ 190 (292)
T PRK00089 156 GDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFL 190 (292)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHH
Confidence 999999999999874 455556666666666643
No 153
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=4.4e-17 Score=165.56 Aligned_cols=192 Identities=17% Similarity=0.126 Sum_probs=131.1
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCcEEEEEEecCChhhHh----hh-hhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKE 354 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~----~~-~~~~~ 354 (504)
.+-...|+|||.||||||||+|+|++.+..... +.||.. ...-.+... ....+.++|++|...-. .+ .....
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~-p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~ 233 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLV-PNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLK 233 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccC-cEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHH
Confidence 344557999999999999999999987754333 334443 223335554 33457788998863210 01 11235
Q ss_pred hcccccEEEEEEeCC---CcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-CeEE
Q 010673 355 ALASCDVTIFVYDSS---DEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIP 430 (504)
Q Consensus 355 ~~~~ad~iilV~D~s---~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 430 (504)
++..+|++++|+|++ +.+.++....|++++..+.. ...+.|+++|+||+|+.......+..+++.+.++.. ++++
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYL 312 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEE
Confidence 688999999999998 45667777788887776421 023689999999999976544444556666665542 4899
Q ss_pred Eeccc-cCHHHHHHHHHHHHhC-CCCCCCCcccccchhhHHhhhcch
Q 010673 431 VSMKS-KDLNNVFSRIIWAAEH-PHLNIPETETGRNRKRYRHLVNSS 475 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~ 475 (504)
+||++ .|++++++.|.+.+.. |..++++...+++.+.+-.-+-|.
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE 359 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHRE 359 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHH
Confidence 99999 9999999999998844 555566666667666444433343
No 154
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=3.7e-17 Score=146.02 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=108.0
Q ss_pred EEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhh------hhhhhhhc--cccc
Q 010673 289 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL--ASCD 360 (504)
Q Consensus 289 vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~------~~~~~~~~--~~ad 360 (504)
++|.+|||||||++++++..+.....+++........+.++ + ..+.+||++|...+.. +. ..++ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~-~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG-G-KEIEIVDLPGTYSLSPYSEDEKVA--RDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC-C-eEEEEEECCCccccCCCChhHHHH--HHHhcCCCCc
Confidence 58999999999999999987544443433333444556666 4 4677899999855432 22 2234 4899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
++++|+|++++.+. ..+...+... ++|+++|+||+|+............+++.++.+ ++++||++ .|++
T Consensus 77 ~vi~v~d~~~~~~~---~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~~ 146 (158)
T cd01879 77 LIVNVVDATNLERN---LYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEGID 146 (158)
T ss_pred EEEEEeeCCcchhH---HHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCCHH
Confidence 99999999886543 3344455433 789999999999977655444566778888876 99999999 9999
Q ss_pred HHHHHHHHHH
Q 010673 440 NVFSRIIWAA 449 (504)
Q Consensus 440 el~~~l~~~~ 449 (504)
++++.|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (158)
T cd01879 147 ELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=6.9e-17 Score=169.68 Aligned_cols=164 Identities=23% Similarity=0.237 Sum_probs=114.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCC--CCCCCccceEEEEEEEcCCCcEEEEEEecCCh----------hhHhhhh
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL 350 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~--~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~----------~~~~~~~ 350 (504)
..++|+|+|.+|||||||+|+|++..+.. ...+|+.+ .....+.++ + ..+.+||++|. +.+..+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d-~~~~~~~~~-~-~~~~l~DTaG~~~~~~~~~~~e~~~~~- 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVD-PVDSLIELG-G-KTWRFVDTAGLRRRVKQASGHEYYASL- 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCC-cceEEEEEC-C-EEEEEEECCCccccccccchHHHHHHH-
Confidence 56899999999999999999999987643 23345544 333445665 4 34568999984 222222
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH---hCCCC
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE---LGIEP 427 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~ 427 (504)
++..+++.+|++++|+|++++.++..+ .++..+.. .++|+|+|+||+|+...........++... ....+
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 358 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAP 358 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCC
Confidence 234567899999999999999888875 35555543 378999999999997532211111222222 23335
Q ss_pred eEEEeccc-cCHHHHHHHHHHHHhCCCCCCC
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWAAEHPHLNIP 457 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~~~~~~~~~~ 457 (504)
++++||++ .|++++|+.+.+.+......++
T Consensus 359 ~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~ 389 (472)
T PRK03003 359 RVNISAKTGRAVDKLVPALETALESWDTRIP 389 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 89999999 9999999999998765544433
No 156
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=8.7e-17 Score=142.66 Aligned_cols=156 Identities=25% Similarity=0.377 Sum_probs=116.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+++|.+|+|||||++++.+..+...+.++++..+....+..++......+||++|+..+..++ ....++++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR--RLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhhhEEEE
Confidence 699999999999999999999998666666677766666556665222456678999876666665 346678999999
Q ss_pred EEeCCCc-ccHHHHH-HHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 365 VYDSSDE-YSWKRTK-ELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 365 V~D~s~~-~s~~~~~-~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
++|.... .++.... .|...+..... .+.|+++|+||+|+.... ............+..+++++||++ .|+.++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHH
Confidence 9998877 6666554 66666665521 278999999999997754 233334444445555599999999 999999
Q ss_pred HHHHH
Q 010673 442 FSRII 446 (504)
Q Consensus 442 ~~~l~ 446 (504)
++.|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
No 157
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=4.8e-17 Score=162.18 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=128.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhhHh--hh-----hhhhhh
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK--KI-----LSNKEA 355 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~--~~-----~~~~~~ 355 (504)
..|+|+|.||||||||+|||++...+.+. +++|++..+. ...+. +. .+.++||.|-+... .+ .++...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~-~~~~~-~~-~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYG-DAEWL-GR-EFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccc-eeEEc-Cc-eEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 57999999999999999999999987654 6788876554 35565 43 37788888764211 11 124567
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
+..||++|||+|+...-+-.+ ..+.+.+.+. ++|+++|+||+|-.... ....-...+|+..++++||.+
T Consensus 81 i~eADvilfvVD~~~Git~~D-~~ia~~Lr~~------~kpviLvvNK~D~~~~e----~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 81 IEEADVILFVVDGREGITPAD-EEIAKILRRS------KKPVILVVNKIDNLKAE----ELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHH-HHHHHHHHhc------CCCEEEEEEcccCchhh----hhHHHHHhcCCCCceEeehhh
Confidence 899999999999988655433 3333444432 79999999999976422 122223567888899999999
Q ss_pred -cCHHHHHHHHHHHHhCCCCCCC-------------CcccccchhhHHhhhcchhhhhhh
Q 010673 436 -KDLNNVFSRIIWAAEHPHLNIP-------------ETETGRNRKRYRHLVNSSLVFVSV 481 (504)
Q Consensus 436 -~gi~el~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~r~~~~~~~ 481 (504)
.|+.+|++.+.+.+. +....+ +.++...+...+++++..+.+++-
T Consensus 150 g~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~ 208 (444)
T COG1160 150 GRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSD 208 (444)
T ss_pred ccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecC
Confidence 999999999999873 221111 234555666788888877777743
No 158
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.73 E-value=1.1e-16 Score=144.47 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=105.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCC-CcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~-~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
.|+|+|.+|||||||+++|++..+...+.+++...+....+.... ....+.+||++|...+..++ ...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMR--ARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHH--HHHHhhcCEEEE
Confidence 589999999999999999999887665444333333333444431 23567789999987776665 346789999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--hHHHHHHHH----HhC-CCCeEEEeccc-c
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQ----ELG-IEPPIPVSMKS-K 436 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~----~~~-~~~~~~vSak~-~ 436 (504)
|+|+++....+. ...+..+... ++|+++|+||+|+...... ......+.. .++ ..+++++||++ .
T Consensus 80 v~d~~~~~~~~~-~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 80 VVAADDGVMPQT-IEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred EEECCCCccHHH-HHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 999998643222 2223333332 7899999999998753211 112222211 111 12489999999 9
Q ss_pred CHHHHHHHHHHHHh
Q 010673 437 DLNNVFSRIIWAAE 450 (504)
Q Consensus 437 gi~el~~~l~~~~~ 450 (504)
|+++++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988653
No 159
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=147.99 Aligned_cols=162 Identities=25% Similarity=0.316 Sum_probs=127.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 364 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iil 364 (504)
+||+|+|++|||||||+++|.+..+...+.+|.+..+........+......+||++|++.+..++ ..++..++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~--~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR--PEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHH--HHHhcCCCEEEE
Confidence 899999999999999999999999999998888876766655555345667789999999998887 568899999999
Q ss_pred EEeCCC-cccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-------------hHHHHHHHHHh--CCCCe
Q 010673 365 VYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------VQDSARVTQEL--GIEPP 428 (504)
Q Consensus 365 V~D~s~-~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~--~~~~~ 428 (504)
|||.++ ..+++....|...+.... ....|+++|+||+|+...... .......+... ..+.+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELA---PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhC---CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 999999 455666788998888762 136999999999999876432 11222222222 12238
Q ss_pred EEEecc--c-cCHHHHHHHHHHHHhC
Q 010673 429 IPVSMK--S-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 429 ~~vSak--~-~gi~el~~~l~~~~~~ 451 (504)
+++|++ + .++.++|..+...+..
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHHH
Confidence 999999 9 9999999999998854
No 160
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.8e-16 Score=163.72 Aligned_cols=168 Identities=18% Similarity=0.093 Sum_probs=114.4
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCcEEEEEEecCChh----hHhhh-hhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEE----GVKKI-LSNKE 354 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~----~~~~~-~~~~~ 354 (504)
.+....|+|||.||||||||+|+|++....... +.||.. .....+.+. + ..+.++|++|.. ....+ .....
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~-P~lGvv~~~-~-~~f~laDtPGliegas~g~gLg~~fLr 232 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLV-PNLGVVQAG-D-TRFTVADVPGLIPGASEGKGLGLDFLR 232 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCccccc-ceEEEEEEC-C-eEEEEEECCCCccccchhhHHHHHHHH
Confidence 455678999999999999999999987665433 334432 334445555 3 567789998842 11111 11244
Q ss_pred hcccccEEEEEEeCCCc----ccHHHHHHHHHHHHHhccC--------CCCCCcEEEEEECCCCCCCccchHHHHHHHHH
Q 010673 355 ALASCDVTIFVYDSSDE----YSWKRTKELLVEVARLGED--------SGYGVPCLLIASKDDLKPYTMAVQDSARVTQE 422 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~----~s~~~~~~~~~~l~~~~~~--------~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 422 (504)
++..||++|+|+|+++. +.+.++..|..++..+... ...++|+|+|+||+|+.......+........
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~ 312 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA 312 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH
Confidence 67889999999999863 3555555555555544210 12478999999999997654433333333445
Q ss_pred hCCCCeEEEeccc-cCHHHHHHHHHHHHhCC
Q 010673 423 LGIEPPIPVSMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 423 ~~~~~~~~vSak~-~gi~el~~~l~~~~~~~ 452 (504)
.+++ +++|||++ .|+++++.+|.+.+...
T Consensus 313 ~g~~-Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 313 RGWP-VFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred cCCe-EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 5665 89999999 99999999999987543
No 161
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.72 E-value=6.4e-17 Score=137.57 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=80.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCC--CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~--~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
||+|+|++|||||||+++|++..+. ....++...++......+......+.+||..|.+.....+. ..+..+|++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~--~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ--FFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH--HHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc--chhhcCcEEE
Confidence 7999999999999999999998876 22233444455555555553333456778777765555442 3478999999
Q ss_pred EEEeCCCcccHHHHHHH---HHHHHHhccCCCCCCcEEEEEECCC
Q 010673 364 FVYDSSDEYSWKRTKEL---LVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~---~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
+|||++++.|++.+..+ +..+... ..++|+++|+||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~----~~~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKR----DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHH----SSCSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHcc----CCCCCEEEEEeccC
Confidence 99999999999887554 5555543 45799999999998
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=2e-16 Score=166.12 Aligned_cols=156 Identities=22% Similarity=0.255 Sum_probs=108.4
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhhH-h----hhh-hhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-K----KIL-SNK 353 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-~----~~~-~~~ 353 (504)
.+.++|+|+|.+|||||||+|+|++....... .+++.+ .....+.+. + ..+.+||++|.+.. . .+. .+.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d-~~~~~~~~~-~-~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRD-RVSYDAEWN-G-RRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEe-eEEEEEEEC-C-cEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 34579999999999999999999998754322 223333 333345555 3 35678999986421 1 111 124
Q ss_pred hhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEec
Q 010673 354 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 433 (504)
.+++.||++|+|||+++..++.. ..+...+... ++|+++|+||+|+..... ...++ ..+++..+++|||
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~------~~piilV~NK~Dl~~~~~---~~~~~-~~~g~~~~~~iSA 181 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATD-EAVARVLRRS------GKPVILAANKVDDERGEA---DAAAL-WSLGLGEPHPVSA 181 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECccCCccch---hhHHH-HhcCCCCeEEEEc
Confidence 57889999999999999877654 4455555433 799999999999865321 12222 2445555789999
Q ss_pred cc-cCHHHHHHHHHHHHhC
Q 010673 434 KS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~~ 451 (504)
++ .|++++++.|.+.+..
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 99 9999999999988744
No 163
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=2e-16 Score=146.85 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=98.6
Q ss_pred EEEEEEcCCCchhhHHHHHHhc--CCCCCCC------------CCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhh
Q 010673 285 FRCLLFGPQNAGKSALLNSFLE--RPFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL 350 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~--~~~~~~~------------~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~ 350 (504)
-+|+++|.+|||||||+++|++ ..+...+ ..+.+.++......+..+...+.+||++|++.+....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4443322 1123333333333343345677889999998877665
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--hHHHHHHHHHh-----
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQEL----- 423 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~----- 423 (504)
..+++.+|++++|||+++.. +.....++..+... ++|+++|+||+|+...... ..+..++...+
T Consensus 83 --~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 --ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred --HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 55889999999999998743 33334455554432 7899999999999754321 22444444332
Q ss_pred --CCCCeEEEeccc-cCHHH
Q 010673 424 --GIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 424 --~~~~~~~vSak~-~gi~e 440 (504)
+. +++++||++ .|+.+
T Consensus 154 ~~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 154 QLDF-PVLYASAKNGWASLN 172 (194)
T ss_pred cCcc-CEEEeehhccccccc
Confidence 44 489999999 77643
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=1.2e-16 Score=143.10 Aligned_cols=138 Identities=19% Similarity=0.235 Sum_probs=98.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh-----hhHhhhhhhhhhccccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD 360 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~-----~~~~~~~~~~~~~~~ad 360 (504)
+|+++|.+|||||||+|++.+.... ..+|.. +.+. +. -+||++|. .....+ ...+..+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~-~~---~~iDtpG~~~~~~~~~~~~---~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFN-DK---GDIDTPGEYFSHPRWYHAL---ITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEEC-CC---CcccCCccccCCHHHHHHH---HHHHhcCC
Confidence 6999999999999999998875421 112222 2222 11 15888886 222333 23578999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-CeEEEeccc-cCH
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSMKS-KDL 438 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSak~-~gi 438 (504)
++++|+|+++..++.. .|+..+ ..+.|+++++||+|+... ..+...++++++++. +++++||++ .|+
T Consensus 67 ~il~v~d~~~~~s~~~--~~~~~~-------~~~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 67 MLIYVHGANDPESRLP--AGLLDI-------GVSKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred EEEEEEeCCCcccccC--HHHHhc-------cCCCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 9999999998877632 343332 226799999999998652 234567777788862 599999999 999
Q ss_pred HHHHHHHHHHHh
Q 010673 439 NNVFSRIIWAAE 450 (504)
Q Consensus 439 ~el~~~l~~~~~ 450 (504)
+++|+.|.+.+.
T Consensus 136 ~~l~~~l~~~~~ 147 (158)
T PRK15467 136 QQLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHHhch
Confidence 999999988764
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=4.7e-16 Score=158.85 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=115.2
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC-CCCCccceEEEEEEEcCCCcEEEEEEecCChhh----Hhhhh-hhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKIL-SNKE 354 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~-~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~----~~~~~-~~~~ 354 (504)
.+-...|+++|.||||||||+|+|++.+.... ++.||.. .....+.++ ....+.++|.+|... ...+. ....
T Consensus 155 lk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~-PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLr 232 (424)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLV-PNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLR 232 (424)
T ss_pred ecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceec-eEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHH
Confidence 34456899999999999999999998875433 3233322 223334444 235677888887521 11111 1134
Q ss_pred hcccccEEEEEEeCCCc---ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEE
Q 010673 355 ALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV 431 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 431 (504)
.+..++++++|+|+++. ++++....|..++..+.. ...++|+++|+||+|+... .+..+.+++.++.+ ++++
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL~~~---~e~l~~l~~~l~~~-i~~i 307 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDLPEA---EENLEEFKEKLGPK-VFPI 307 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCCcCC---HHHHHHHHHHhCCc-EEEE
Confidence 56789999999999865 667777788888876521 1247899999999998532 23456677777754 8999
Q ss_pred eccc-cCHHHHHHHHHHHHhC
Q 010673 432 SMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~~~ 451 (504)
||++ .|+++++++|.+.+..
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 9999 9999999999988754
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=3.8e-16 Score=139.09 Aligned_cols=147 Identities=22% Similarity=0.291 Sum_probs=101.8
Q ss_pred EEEcCCCchhhHHHHHHhcCCCC--CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhh-----hh-hhhhhcccc
Q 010673 288 LLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----IL-SNKEALASC 359 (504)
Q Consensus 288 ~vvG~~~vGKSSLin~l~~~~~~--~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~-----~~-~~~~~~~~a 359 (504)
+++|.+|||||||+|+|++.... ...++++.. .....+... + ..+.+||++|...... +. .....+..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~-~~~~~~~~~-~-~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRD-RIYGEAEWG-G-REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeC-ceeEEEEEC-C-eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 47999999999999999987632 233344443 233334444 3 5677899999755332 11 123467889
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
|++++|+|++++.+.... .+...+... +.|+++|+||+|+...... ......++..+++++|+++ .|+
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCH
Confidence 999999999887555442 233334332 6999999999999764332 2333456665689999999 999
Q ss_pred HHHHHHHHHH
Q 010673 439 NNVFSRIIWA 448 (504)
Q Consensus 439 ~el~~~l~~~ 448 (504)
++++++|.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 167
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.70 E-value=8.9e-16 Score=129.28 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=132.5
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCccceEEEEEEEcCCCcE-EEEEEecCChhhH-hhhhhhhhhcc
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTGEQYAVNVVDQPGGNK-KTLILQEIPEEGV-KKILSNKEALA 357 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~~~~~~~~v~~~~~~~-~~li~d~~g~~~~-~~~~~~~~~~~ 357 (504)
...-||+|+|..+||||+++.+|+-.+.... +.||+.+.|. ..++.+.|.. .+.++|+.|-... ..+ ...++.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~-~svet~rgarE~l~lyDTaGlq~~~~eL--prhy~q 83 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYV-ASVETDRGAREQLRLYDTAGLQGGQQEL--PRHYFQ 83 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhee-EeeecCCChhheEEEeecccccCchhhh--hHhHhc
Confidence 4567999999999999999999987665443 4678887554 4577765543 4456788876544 222 256889
Q ss_pred cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEeccc-
Q 010673 358 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVSMKS- 435 (504)
Q Consensus 358 ~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vSak~- 435 (504)
-+|++++|||..|++||+.+..+-.++.+..+ ...+||++.+||+|+.++++... .++.||+.-... .+++++++
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd--KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR 160 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKD--KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDR 160 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccc--cccccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccc
Confidence 99999999999999999998777777776543 56899999999999987776654 788899988887 89999999
Q ss_pred cCHHHHHHHHHHHHhCCCC
Q 010673 436 KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~~~~ 454 (504)
..+-+.|..++..+..|..
T Consensus 161 ~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred hhhhhHHHHHHHhccCCcc
Confidence 9999999999998876643
No 168
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.69 E-value=7.5e-16 Score=141.73 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=106.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCc----------------cceEEEEEEEcCCCcEEEEEEecCChhhHhhh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 349 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~----------------~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~ 349 (504)
+|+|+|.+|||||||+|+|++........++. ........+... ...+.+||++|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999887654432211 111112223332 356778999998666554
Q ss_pred hhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH---HHHHHHHHhC--
Q 010673 350 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ---DSARVTQELG-- 424 (504)
Q Consensus 350 ~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---~~~~~~~~~~-- 424 (504)
+ ..++..+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+........ ...+..+.++
T Consensus 79 ~--~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 79 V--IRGLSVSDGAILVVDANEGVQPQT-REHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred H--HHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 4 457789999999999998765543 344444443 3799999999999986333222 3444444332
Q ss_pred -----------CCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 425 -----------IEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 425 -----------~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
..+++++||++ .|++++++.|.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 23589999999 99999999999876
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=7.6e-16 Score=138.14 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=104.7
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCC--CCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhh------hhhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA 355 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~--~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~------~~~~~ 355 (504)
..+|+++|.+|||||||+|+|++........ .++.. ....+... +...+.+||++|........ .....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec--eEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 5789999999999999999999987644332 23222 12222222 34667789998863221111 11346
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc-cchHHHHHHHHHhCCCCeEEEecc
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT-MAVQDSARVTQELGIEPPIPVSMK 434 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~vSak 434 (504)
+..+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.... ........+....+..+++++|++
T Consensus 80 ~~~~d~i~~v~d~~~~~~~~~-~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGD-EFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred HHhCCEEEEEEECCCccCchH-HHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEec
Confidence 788999999999998732221 3334444432 68999999999998433 333355666666655568999999
Q ss_pred c-cCHHHHHHHHHHH
Q 010673 435 S-KDLNNVFSRIIWA 448 (504)
Q Consensus 435 ~-~gi~el~~~l~~~ 448 (504)
+ .|++++++.|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 9 9999999999764
No 170
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=2.4e-16 Score=143.35 Aligned_cols=157 Identities=22% Similarity=0.227 Sum_probs=103.9
Q ss_pred EEcCCCchhhHHHHHHhcCCCC-CCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH----hhhh-hhhhhcccccEE
Q 010673 289 LFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL-SNKEALASCDVT 362 (504)
Q Consensus 289 vvG~~~vGKSSLin~l~~~~~~-~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~~~-~~~~~~~~ad~i 362 (504)
++|++|||||||+|+|++.+.. ..+.+|+.. .....+.+++ ...+.+||++|.... +.+. .....++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLE-PNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeec-CcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999998752 222333322 1222344441 356788999986321 1121 113456789999
Q ss_pred EEEEeCCCc------ccHHHHHHHHHHHHHhccC----CCCCCcEEEEEECCCCCCCccchHH-HHHHHHHhCCCCeEEE
Q 010673 363 IFVYDSSDE------YSWKRTKELLVEVARLGED----SGYGVPCLLIASKDDLKPYTMAVQD-SARVTQELGIEPPIPV 431 (504)
Q Consensus 363 ilV~D~s~~------~s~~~~~~~~~~l~~~~~~----~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~v 431 (504)
++|+|++++ .++.....|...+...... ...+.|+++|+||+|+......... ........+. .++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGA-EVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCC-CEEEE
Confidence 999999998 4677777777777643110 0137999999999999765443332 1223333333 48999
Q ss_pred eccc-cCHHHHHHHHHHH
Q 010673 432 SMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~ 448 (504)
||++ .|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 9999 9999999998764
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=1.4e-15 Score=137.60 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=104.4
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-------h--hhhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------K--KILSN 352 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-------~--~~~~~ 352 (504)
.++|+++|.+|+|||||+|+|++...... ..+++... ....+... + ..+.+||++|.... + .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS-IDVPFEYD-G-KKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc-eeeEEEEC-C-eeEEEEECCCCccccchhccHHHHHHHHH
Confidence 57899999999999999999998765332 22333332 22334444 3 44678999885321 1 11122
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc--cchHHHHHHHHHhC---CCC
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--MAVQDSARVTQELG---IEP 427 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~---~~~ 427 (504)
...+..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.... ......+.+.+.++ ..+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence 3456799999999999998776553 34444432 278999999999997653 22223334444443 235
Q ss_pred eEEEeccc-cCHHHHHHHHHHH
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~ 448 (504)
++++||++ .|++++++.+.+.
T Consensus 152 ~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 152 IVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eEEEeccCCCCHHHHHHHHHHh
Confidence 89999999 9999999998764
No 172
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=155.81 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=123.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhh---------Hhhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEG---------VKKIL 350 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~---------~~~~~ 350 (504)
...+||+|+|.||||||||+|+|++.+...++ ++||++.+... ++.+ + ..+.++||+|... ..+..
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~-~e~~-~-~~~~liDTAGiRrk~ki~e~~E~~Sv~ 252 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIE-FERD-G-RKYVLIDTAGIRRKGKITESVEKYSVA 252 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeee-EEEC-C-eEEEEEECCCCCcccccccceEEEeeh
Confidence 46799999999999999999999999987655 56888866553 6665 3 6778899988632 12344
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch--H---HHHHHHHHhCC
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV--Q---DSARVTQELGI 425 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~---~~~~~~~~~~~ 425 (504)
++...+..+|++++|+|++.+-+-++ ..+...+.+. +.++++|.||+|+.+..... + +++......+.
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEEA------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHc------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 56778899999999999999977666 4555556544 89999999999998763221 1 33334444555
Q ss_pred CCeEEEeccc-cCHHHHHHHHHHHHhCCCC
Q 010673 426 EPPIPVSMKS-KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 426 ~~~~~vSak~-~gi~el~~~l~~~~~~~~~ 454 (504)
.+.+.+||++ .|+.++|+.+.+.......
T Consensus 326 a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 326 APIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred CeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 5789999999 9999999999887654433
No 173
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=8.9e-16 Score=136.60 Aligned_cols=147 Identities=24% Similarity=0.319 Sum_probs=103.8
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCC--CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHh------hhhhhhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEA 355 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~--~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~------~~~~~~~~ 355 (504)
+++|+++|++|+|||||++++++..... ...+++.. +....+... + ..+.+||++|..... ........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD-VIEESIDIG-G-IPVRLIDTAGIRETEDEIEKIGIERAREA 77 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc-eEEEEEEeC-C-EEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence 3689999999999999999999887532 22233332 333344444 3 566789999863321 12223456
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
+..+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... .....+. +++++||++
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~---------~~~~~vi~v~nK~D~~~~~~~------~~~~~~~-~~~~~Sa~~ 141 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL---------PADKPIIVVLNKSDLLPDSEL------LSLLAGK-PIIAISAKT 141 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh---------hcCCCEEEEEEchhcCCcccc------ccccCCC-ceEEEECCC
Confidence 789999999999999888776544332 237999999999999864432 2223333 589999999
Q ss_pred -cCHHHHHHHHHHHH
Q 010673 436 -KDLNNVFSRIIWAA 449 (504)
Q Consensus 436 -~gi~el~~~l~~~~ 449 (504)
.|+++++++|.+.+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 99999999998754
No 174
>PRK04213 GTP-binding protein; Provisional
Probab=99.69 E-value=6.6e-16 Score=144.11 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=101.4
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCC-----------hhhHhhhhh
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS 351 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g-----------~~~~~~~~~ 351 (504)
..++|+++|.+|||||||+|+|++..+.....+++. +....+.+. .+.+||++| .+.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 457999999999999999999999886544444332 222333332 367899988 334443321
Q ss_pred h--hhhcccccEEEEEEeCCCcccHH----------HHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHH
Q 010673 352 N--KEALASCDVTIFVYDSSDEYSWK----------RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV 419 (504)
Q Consensus 352 ~--~~~~~~ad~iilV~D~s~~~s~~----------~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~ 419 (504)
. ......++++++|+|.++...+. .-..++..+.. .++|+++|+||+|+.... .+...++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~p~iiv~NK~Dl~~~~--~~~~~~~ 153 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE------LGIPPIVAVNKMDKIKNR--DEVLDEI 153 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH------cCCCeEEEEECccccCcH--HHHHHHH
Confidence 1 11234568889999886532210 00122333332 379999999999997543 2356677
Q ss_pred HHHhCCC--------CeEEEeccccCHHHHHHHHHHHHh
Q 010673 420 TQELGIE--------PPIPVSMKSKDLNNVFSRIIWAAE 450 (504)
Q Consensus 420 ~~~~~~~--------~~~~vSak~~gi~el~~~l~~~~~ 450 (504)
++.+++. +++++||++.|+++++++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~ggi~~l~~~l~~~~~ 192 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKGGIEELKEAIRKRLH 192 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence 7777751 379999998899999999998763
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=1.1e-15 Score=159.36 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=112.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCC--CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH---------hhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV---------KKIL 350 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~--~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~---------~~~~ 350 (504)
...++|+++|.+|||||||+|+|++.+... ...+|+.+.+. ..+... + ..+.+||++|.... ....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~-~~~~~~-~-~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID-IPFERN-G-KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEe-EEEEEC-C-cEEEEEECCCccccccchhhHHHHHHH
Confidence 356899999999999999999999887543 23445554332 234454 4 36778999995322 1122
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHh---CCC
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQEL---GIE 426 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~---~~~ 426 (504)
++..+++.+|++|+|+|++++.+..+. .++..+... ++|+++|+||+|+.......+ ....+...+ +..
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 319 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA------GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFA 319 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc------CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCC
Confidence 335578999999999999998887764 444555433 789999999999983222122 222333333 223
Q ss_pred CeEEEeccc-cCHHHHHHHHHHHHhCCCC
Q 010673 427 PPIPVSMKS-KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 427 ~~~~vSak~-~gi~el~~~l~~~~~~~~~ 454 (504)
+++++||++ .|++++|+.+.+.+.....
T Consensus 320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 320 PIVFISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 589999999 9999999999987755433
No 176
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=1.1e-15 Score=134.02 Aligned_cols=152 Identities=25% Similarity=0.440 Sum_probs=109.4
Q ss_pred EEcCCCchhhHHHHHHhcCCC-CCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEe
Q 010673 289 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 367 (504)
Q Consensus 289 vvG~~~vGKSSLin~l~~~~~-~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D 367 (504)
|+|++|+|||||++++.+... .....+|. ..+...............+||.+|........ ...++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR--RLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHH--HHHhcCCCEEEEEEE
Confidence 589999999999999999887 44444555 54555555554344567788888876655544 457789999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHH--HHHHHHHhCCCCeEEEeccc-cCHHHHHHH
Q 010673 368 SSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD--SARVTQELGIEPPIPVSMKS-KDLNNVFSR 444 (504)
Q Consensus 368 ~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~vSak~-~gi~el~~~ 444 (504)
++++.++.....|........ ...+.|+++|+||+|+......... .......... +++++|+++ .|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 78 VTDRESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGV-PYFETSAKTGENVEELFEE 154 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCC-cEEEEecCCCCChHHHHHH
Confidence 999998888777622222111 1458999999999999765544332 2333334444 599999999 999999998
Q ss_pred HH
Q 010673 445 II 446 (504)
Q Consensus 445 l~ 446 (504)
|.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 75
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=2.7e-15 Score=139.20 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=104.2
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh----------hhHhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL 350 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~----------~~~~~~~ 350 (504)
.+..++|+++|.+|||||||+|+|++..+...+.++.+.+.......++ ..+.+||++|. +.+..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 4577899999999999999999999987544444555444333333332 45778999984 1222222
Q ss_pred hhhhhcc---cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH---HHHHHHHHhC
Q 010673 351 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ---DSARVTQELG 424 (504)
Q Consensus 351 ~~~~~~~---~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---~~~~~~~~~~ 424 (504)
..++. .++++++|+|.+++.+.... .+...+.. .++|+++|+||+|+.+..+... .+..+....+
T Consensus 98 --~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 98 --EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred --HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 22333 45789999998887554431 22233332 2789999999999976443322 2333333333
Q ss_pred CCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 425 IEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 425 ~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
. .++++||++ .|++++++.|.+.+.
T Consensus 169 ~-~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 D-EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred C-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4 489999999 999999999988764
No 178
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.66 E-value=6.5e-16 Score=129.24 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=124.5
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...+.+.++|-.++|||||+|....+.+.+.-.||.+- .... +..|.....+||-+|+..++++| ..|++.+++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf--nmrk--~tkgnvtiklwD~gGq~rfrsmW--erycR~v~a 91 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF--NMRK--VTKGNVTIKLWDLGGQPRFRSMW--ERYCRGVSA 91 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccc--eeEE--eccCceEEEEEecCCCccHHHHH--HHHhhcCcE
Confidence 34567999999999999999999998888887888884 3332 33366777789999998999999 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSak 434 (504)
+++|+|+++++.......-+..+..... ..++|+++.|||.|++..-. ...+..++|+. .++.+||+
T Consensus 92 ivY~VDaad~~k~~~sr~EL~~LL~k~~--l~gip~LVLGnK~d~~~AL~----~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 92 IVYVVDAADPDKLEASRSELHDLLDKPS--LTGIPLLVLGNKIDLPGALS----KIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred EEEEeecCCcccchhhHHHHHHHhcchh--hcCCcEEEecccccCccccc----HHHHHHHhCccccccceEEEEEEEEc
Confidence 9999999999888766665655543321 56899999999999987432 34556666765 26899999
Q ss_pred c-cCHHHHHHHHHHHHh
Q 010673 435 S-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~~ 450 (504)
. .||+-+.++|+++..
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 9 999999999998653
No 179
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-15 Score=142.03 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=123.9
Q ss_pred cccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH---------hhh
Q 010673 279 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV---------KKI 349 (504)
Q Consensus 279 ~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~---------~~~ 349 (504)
......++|+|+|.||||||||.|.+++.+...++..+...+...-.+... |..+.+++|++|.-.- .++
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence 334677899999999999999999999999988775533333444445555 7788999999986211 111
Q ss_pred -hhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-------------H
Q 010673 350 -LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-------------D 415 (504)
Q Consensus 350 -~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~ 415 (504)
......+..||++++|+|+++....-. ...+..+.++ .++|-++|.||+|........- .
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-----hcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 112456789999999999997433222 2334444443 3799999999999876543210 0
Q ss_pred HHHHHHHhC----------------CCCeEEEeccc-cCHHHHHHHHHHHHh-CCCCCCCCcccccchhhH
Q 010673 416 SARVTQELG----------------IEPPIPVSMKS-KDLNNVFSRIIWAAE-HPHLNIPETETGRNRKRY 468 (504)
Q Consensus 416 ~~~~~~~~~----------------~~~~~~vSak~-~gi~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 468 (504)
..++.+++. +..+|.+||++ +||+++.++|..++. .|..+......+.+.+++
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l 290 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFL 290 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHH
Confidence 122233222 22379999999 999999999999884 444555566666666544
No 180
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.66 E-value=2.2e-15 Score=137.98 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=96.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChh----------hHhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKIL 350 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~----------~~~~~~ 350 (504)
.++.++|+|+|.+|||||||+|+|++..+...+.++.+.+.....+..+ + .+.+||++|.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 4677899999999999999999999986444333444443333334444 2 46789999842 122221
Q ss_pred hhhhhcc---cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch---HHHHHHHHHhC
Q 010673 351 SNKEALA---SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV---QDSARVTQELG 424 (504)
Q Consensus 351 ~~~~~~~---~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~---~~~~~~~~~~~ 424 (504)
..+++ .+|++++|+|++++.+..+. .++..+... ++|+++|+||+|+....... +.+++.....+
T Consensus 92 --~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 92 --EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred --HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 12333 46899999999987665554 333444332 78999999999997643332 24445555543
Q ss_pred CC-CeEEEeccc-cCHH
Q 010673 425 IE-PPIPVSMKS-KDLN 439 (504)
Q Consensus 425 ~~-~~~~vSak~-~gi~ 439 (504)
.. +++++||++ +|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 22 589999999 9873
No 181
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.66 E-value=2.1e-15 Score=139.74 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=98.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCC----CCCCC----CC-CccceEEEEEEEc----------CCCcEEEEEEecCChhh
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERP----FSENY----AP-TTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG 345 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~----~~~~~----~~-T~~~~~~~~~v~~----------~~~~~~~li~d~~g~~~ 345 (504)
++|+++|++|||||||+++|++.. +...+ .+ |....+....+.. .+....+.+||++|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999999731 11111 11 2232222222221 11235677899999854
Q ss_pred HhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH---HHHH-HHH
Q 010673 346 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ---DSAR-VTQ 421 (504)
Q Consensus 346 ~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---~~~~-~~~ 421 (504)
+... .......+|++++|+|+++.........+. .... .+.|+++|+||+|+........ ...+ +..
T Consensus 81 ~~~~--~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 81 LIRT--IIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred HHHH--HHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 3211 123456789999999999865544433222 1221 2679999999999975332211 2222 211
Q ss_pred H------hCCCCeEEEeccc-cCHHHHHHHHHHHHhCC
Q 010673 422 E------LGIEPPIPVSMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 422 ~------~~~~~~~~vSak~-~gi~el~~~l~~~~~~~ 452 (504)
. .+. +++++||++ .|+++|++.|.+++.-|
T Consensus 152 ~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 152 TLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 133 489999999 99999999999887544
No 182
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.65 E-value=2.6e-16 Score=148.68 Aligned_cols=287 Identities=15% Similarity=0.132 Sum_probs=179.1
Q ss_pred HHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhH---HHHHHHhhhhhcCCCCCCCCHHHHhh
Q 010673 126 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEA---VEFLRGIFGLYDIDNDGAVRPAELED 201 (504)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~---~~~l~~lf~~~D~d~dG~l~~~e~~~ 201 (504)
+.++..|+.|++....+.-+. ...+...+-+ + .+..+ ........+ ...++++|+++..+.++.|+. -+++
T Consensus 36 k~~~gsGn~e~Li~~i~aa~a-t~~f~nv~a~~a-~~~~e--k~r~~~VrvfDr~~~vl~if~q~a~T~earlqv-alAe 110 (410)
T KOG0410|consen 36 KTYIGSGNVEELIIEIFAAHA-TTKFANVQAELA-ALMYE--KSRLVRVRVFDRRHTVLQIFEQEAVTAEARLQV-ALAE 110 (410)
T ss_pred ceeeecCcHHHHHHHHhcCcc-ceeeecccccch-hHHHH--HhhhcceeeecchhhHHHHHHHHhhhHHHHHhh-hhhc
Confidence 456778999988776666652 2333333323 2 22111 111111222 378999999999999999999 9999
Q ss_pred hhccCCCCC--CCCCccccccccccCCcccHHHHHHhhhhhhccCHHH-HHH--HHHHhcCCCChHHHHHHhhhhhhhhh
Q 010673 202 LFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRH-SLA--NLIYVGYGGDPAAALRVTRKRSVDRK 276 (504)
Q Consensus 202 l~~~~p~~p--~~~~~~~~~~~~~~~g~i~~~~~l~~w~~~~~~~~~~-~~~--~l~~lg~~~~~~~~l~~~~~~~~~~~ 276 (504)
|-+..|++. |++... ..|+. ..|- +...++.+. .+- ..+. .+.+++..++++ ..+
T Consensus 111 mpy~~~rl~r~~~hl~r-------~~g~~-v~gs-----ges~id~d~~rllr~kea~------lrKeL~~vrrkr-~~r 170 (410)
T KOG0410|consen 111 MPYVGGRLERELQHLRR-------QSGGQ-VKGS-----GESIIDRDIRRLLRIKEAQ------LRKELQRVRRKR-QRR 170 (410)
T ss_pred CccccchHHHHHHHHHh-------cCCCc-ccCc-----cchHhHHHHHHHHHHHHHH------HHHHHHHHHHHH-hhh
Confidence 999998876 655432 11221 1111 222222222 111 1122 355666666666 555
Q ss_pred hhcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC--CCccceEEEEEEEcCCCcEEEEEEecC------ChhhHhh
Q 010673 277 KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--PTTGEQYAVNVVDQPGGNKKTLILQEI------PEEGVKK 348 (504)
Q Consensus 277 ~~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~--~T~~~~~~~~~v~~~~~~~~~li~d~~------g~~~~~~ 348 (504)
.+...+...-|.+||++|+|||||+++|++...-.... .|... ..+...+++|. ..++.|+. |.....+
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDp--T~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaA 247 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDP--TLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAA 247 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccc--hhhhccCCCCc-EEEEeechhhhhhCcHHHHHH
Confidence 66667788899999999999999999999655432221 12222 22235667564 44444544 4556677
Q ss_pred hhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccC-CCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCC
Q 010673 349 ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED-SGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEP 427 (504)
Q Consensus 349 ~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 427 (504)
+..+.+.+..+|++++|.|+|+|+.-+.....+.-+....-. ......++-|-||+|..+..... +.++
T Consensus 248 F~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------E~n~--- 317 (410)
T KOG0410|consen 248 FQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------EKNL--- 317 (410)
T ss_pred HHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------ccCC---
Confidence 777888999999999999999998877666666666654210 00112267889999987643221 1222
Q ss_pred eEEEeccc-cCHHHHHHHHHHHHh
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.+.+||++ +|.+++.+.+-....
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccccCccHHHHHHHHHHHhh
Confidence 48899999 999999999877654
No 183
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.65 E-value=7.6e-17 Score=122.40 Aligned_cols=70 Identities=47% Similarity=0.877 Sum_probs=66.8
Q ss_pred CCCCCccccccccccCCcccHHHHHHhhhhhhccCHHHHHHHHHHhcCCC-----ChHHHHHHhhhhhhhhhhhc
Q 010673 210 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ 279 (504)
Q Consensus 210 p~~~~~~~~~~~~~~~g~i~~~~~l~~w~~~~~~~~~~~~~~l~~lg~~~-----~~~~~l~~~~~~~~~~~~~~ 279 (504)
||.+..++.++++++.|+||++||||+|+++|++||+.+++||+||||++ ++.++++++|+|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 79888999999999999999999999999999999999999999999999 78999999999999988764
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=6e-15 Score=154.20 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=110.6
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCccceEEEEEEEcCCCcEEEEEEecCChhh---------Hhhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG---------VKKIL 350 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~---------~~~~~ 350 (504)
...++|+|+|.+|||||||+|+|++.+.... ..+|+.+.+. ..+... + ..+.+||++|... .....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~-~~~~~~-~-~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSID-TPFERD-G-QKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEE-EEEEEC-C-eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 3579999999999999999999998765332 3345554332 234444 3 5567899998521 11222
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh---CCCC
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL---GIEP 427 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~ 427 (504)
++..+++.+|++|+|+|++++.+.++. .++..+... +.|+++|+||+|+.......+...++...+ +..+
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA------GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAP 320 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc------CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCC
Confidence 335578899999999999998887664 444445433 789999999999985433222223333332 2335
Q ss_pred eEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
++++||++ .|++++++.+.+....
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999 9999999999876643
No 185
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.65 E-value=5.4e-15 Score=158.28 Aligned_cols=160 Identities=14% Similarity=0.223 Sum_probs=115.3
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCC-------CCCCCCC------ccceEEEEEEEc-----CCCcEEEEEEecCChhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPF-------SENYAPT------TGEQYAVNVVDQ-----PGGNKKTLILQEIPEEG 345 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~-------~~~~~~T------~~~~~~~~~v~~-----~~~~~~~li~d~~g~~~ 345 (504)
.-+|+|+|+.++|||||+++|+...- ...+..+ .+.++....+.+ ++....+.+||++|+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 34799999999999999999987531 1112111 233333333222 32335677899999988
Q ss_pred HhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC
Q 010673 346 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 425 (504)
Q Consensus 346 ~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 425 (504)
+.... ..++..||++|+|+|+++..+.+....|...+. .++|+++|+||+|+.... .....+++++.+++
T Consensus 83 F~~~v--~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~ 152 (595)
T TIGR01393 83 FSYEV--SRSLAACEGALLLVDAAQGIEAQTLANVYLALE-------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGL 152 (595)
T ss_pred HHHHH--HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCC
Confidence 86665 457899999999999999887777666655442 278999999999986532 12245667777776
Q ss_pred C--CeEEEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 426 E--PPIPVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 426 ~--~~~~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
. .++++||++ .|++++++.|.+.+..|.
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4 379999999 999999999999875553
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=5e-15 Score=162.84 Aligned_cols=166 Identities=22% Similarity=0.232 Sum_probs=114.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCC--CCCCCCccceEEEEEEEcCCCcEEEEEEecCChh---------hHhhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE---------GVKKIL 350 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~--~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~---------~~~~~~ 350 (504)
...++|+++|.+|||||||+|+|++.++. ..+.+|+.+.+ ...+.++ +. .+.+||++|.. .+....
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~-~~~~~~~-~~-~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPV-DEIVEID-GE-DWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcc-eeEEEEC-CC-EEEEEECCCcccCcccchhHHHHHHH
Confidence 35689999999999999999999998753 33455665543 3345566 43 45589999842 111122
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh---CCCC
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL---GIEP 427 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~ 427 (504)
++..+++.+|++++|+|+++..+++... ++..+... ++|+++|+||+|+.+..........+...+ ...+
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~------~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ 597 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA------GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWAR 597 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCC
Confidence 2345678999999999999998888754 44555433 789999999999976332111112222222 2234
Q ss_pred eEEEeccc-cCHHHHHHHHHHHHhCCCCCCC
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWAAEHPHLNIP 457 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~~~~~~~~~~ 457 (504)
.+++||++ .|++++++.+.+.+......++
T Consensus 598 ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~ 628 (712)
T PRK09518 598 RVNLSAKTGWHTNRLAPAMQEALESWDQRIP 628 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 69999999 9999999999998765443333
No 187
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.3e-15 Score=151.79 Aligned_cols=181 Identities=17% Similarity=0.115 Sum_probs=124.8
Q ss_pred HhhhhhhhhhhhcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChh
Q 010673 267 VTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEE 344 (504)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~ 344 (504)
.+-.+....+..+..+.+++|+|+|+||||||||+|.|.+.+...+. ++||++.+... ++++ | ..+.+.||+|-.
T Consensus 251 ~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~-v~~~-G-~~v~L~DTAGiR 327 (531)
T KOG1191|consen 251 DVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQ-VTVN-G-VPVRLSDTAGIR 327 (531)
T ss_pred HHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeE-eecC-C-eEEEEEeccccc
Confidence 44445555556667788899999999999999999999999998765 56888866554 6777 6 455567777753
Q ss_pred h-------HhhhhhhhhhcccccEEEEEEeC--CCcccHHHHHHHHHHHHHhc---cCCCCCCcEEEEEECCCCCCCc-c
Q 010673 345 G-------VKKILSNKEALASCDVTIFVYDS--SDEYSWKRTKELLVEVARLG---EDSGYGVPCLLIASKDDLKPYT-M 411 (504)
Q Consensus 345 ~-------~~~~~~~~~~~~~ad~iilV~D~--s~~~s~~~~~~~~~~l~~~~---~~~~~~~piilV~NK~Dl~~~~-~ 411 (504)
. ..++.++...+..+|+|++|+|+ ++-++...+.+.+....... .......|++++.||+|+..+- +
T Consensus 328 e~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~ 407 (531)
T KOG1191|consen 328 EESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE 407 (531)
T ss_pred cccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc
Confidence 2 24566677888999999999999 55555555555555544321 1112458999999999998752 2
Q ss_pred chHHHHHHHHHhC---CCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 412 AVQDSARVTQELG---IEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 412 ~~~~~~~~~~~~~---~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.......+....+ ++...++||++ +|++.|.+.|.+...
T Consensus 408 ~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 408 MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 2111112222211 22346699999 999999999988763
No 188
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.8e-15 Score=133.00 Aligned_cols=158 Identities=24% Similarity=0.263 Sum_probs=125.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
.....+|+++|-.|+||||++++|...++..+ .||++- .+..+.+. ...+.+||-.|++.++.+| ..|+++.+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf--nVE~v~yk--n~~f~vWDvGGq~k~R~lW--~~Y~~~t~ 86 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF--NVETVEYK--NISFTVWDVGGQEKLRPLW--KHYFQNTQ 86 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc--ceeEEEEc--ceEEEEEecCCCcccccch--hhhccCCc
Confidence 45678999999999999999999998887655 688884 56667776 3677889999998889998 56999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEec
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM 433 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa 433 (504)
++|||+|.+|++.+.++++-+..+..... ..+.|+++.+||.|++..-...+ +.+.+++. .+..++|
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~~als~~e----i~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLPGALSAAE----ITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhccccCCHHH----HHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999988887777776532 46899999999999987544322 22222221 2567788
Q ss_pred cc-cCHHHHHHHHHHHHhC
Q 010673 434 KS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~~ 451 (504)
.+ +|+.+.+++|.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 88 9999999999988754
No 189
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.64 E-value=8.2e-16 Score=129.41 Aligned_cols=138 Identities=12% Similarity=0.218 Sum_probs=119.5
Q ss_pred cchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHH
Q 010673 50 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI 129 (504)
Q Consensus 50 ~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~ 129 (504)
.++..++++|++||.+.|.|+||.|+.++|...+. .+|..+++++|+.|+.+. +|.|+|.-||.++...+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~a-SlGk~~~d~elDaM~~Ea---------~gPINft~FLTmfGekL 94 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLA-SLGKIASDEELDAMMKEA---------PGPINFTVFLTMFGEKL 94 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHhC---------CCCeeHHHHHHHHHHHh
Confidence 46889999999999999999999999999999977 679999999999999887 77899999999998777
Q ss_pred hcCCc-hhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 130 EKGRL-ETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 130 ~~~~~-e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
....+ +.+..||+.||.+++|.|..+.| . .+ +..+.... +++.+||+.+-.|..|.+++.+|..++..
T Consensus 95 ~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre-~L-------tt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 95 NGTDPEEVILNAFKTFDDEGSGKIDEDYLRE-LL-------TTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred cCCCHHHHHHHHHHhcCccCCCccCHHHHHH-HH-------HHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 65444 57999999999999999999988 5 33 23343333 89999999999999999999999988763
No 190
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.64 E-value=9e-15 Score=155.76 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=111.2
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
...+.++|+++|++++|||||+++|.+..+.....+++..++....+.++++ ..+.+||++|++.+..++ ...+..+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r--~rga~~a 159 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMR--ARGAKVT 159 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHH--HhhhccC
Confidence 3456689999999999999999999998887665444444344445666533 367899999998887776 3567899
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhC-------C-CCeEEE
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG-------I-EPPIPV 431 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-------~-~~~~~v 431 (504)
|++++|+|+++....+... .+..... .++|+++++||+|+.... .+........++ . .+++++
T Consensus 160 DiaILVVda~dgv~~qT~e-~i~~~~~------~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 160 DIVVLVVAADDGVMPQTIE-AISHAKA------ANVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred CEEEEEEECCCCCCHhHHH-HHHHHHH------cCCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 9999999998754333322 2333332 379999999999996532 122222222222 1 248999
Q ss_pred eccc-cCHHHHHHHHHHH
Q 010673 432 SMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~ 448 (504)
||++ .|++++++.|...
T Consensus 231 SAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 231 SALTGDGIDELLDMILLQ 248 (587)
T ss_pred ECCCCCChHHHHHhhhhh
Confidence 9999 9999999999754
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=3.9e-15 Score=155.60 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=105.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCC--CCCCCccceEEEEEEEcCCCcEEEEEEecCChhh----H-hhhh-hhhhhc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----V-KKIL-SNKEAL 356 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~--~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~----~-~~~~-~~~~~~ 356 (504)
++|+++|.+|||||||+|+|++..... ...+++.+ .....+.+. + ..+.+||++|... . ..+. ....++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d-~~~~~~~~~-~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRD-RIYGEAEWL-G-REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCccc-ceEEEEEEC-C-cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 589999999999999999999887532 33344444 333346665 4 6678899999865 1 1111 124567
Q ss_pred ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-
Q 010673 357 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS- 435 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~- 435 (504)
..+|++|+|+|++++.+..+ ..+...+.+. ++|+++|+||+|+.... ....++ ..+++..++++||++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~-~~~~~~l~~~------~~piilv~NK~D~~~~~---~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPAD-EEIAKILRKS------NKPVILVVNKVDGPDEE---ADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCcEEEEEECccCccch---hhHHHH-HhcCCCCCEEEEeeCC
Confidence 89999999999998755433 1222333332 78999999999975422 122333 356666689999999
Q ss_pred cCHHHHHHHHHHHH
Q 010673 436 KDLNNVFSRIIWAA 449 (504)
Q Consensus 436 ~gi~el~~~l~~~~ 449 (504)
.|++++++.|.+..
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998843
No 192
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.3e-16 Score=134.80 Aligned_cols=161 Identities=16% Similarity=0.275 Sum_probs=136.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
.-.++++++|+.|.|||+++++.+.++|..++.+|++.....-....+-|..++..||++|++.+.... ..++-++.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr--dgyyI~~qc 85 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR--DGYYIQGQC 85 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccc--cccEEecce
Confidence 347899999999999999999999999999999999987766655555577888899999998887775 457778899
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHH
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNN 440 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~e 440 (504)
.|++||++..-++.++..|...+.+. +.++||+++|||.|..... .....-.+.++.++. ++++||++ .|.+.
T Consensus 86 AiimFdVtsr~t~~n~~rwhrd~~rv----~~NiPiv~cGNKvDi~~r~-~k~k~v~~~rkknl~-y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 86 AIIMFDVTSRFTYKNVPRWHRDLVRV----RENIPIVLCGNKVDIKARK-VKAKPVSFHRKKNLQ-YYEISAKSNYNFER 159 (216)
T ss_pred eEEEeeeeehhhhhcchHHHHHHHHH----hcCCCeeeeccceeccccc-cccccceeeecccce-eEEeeccccccccc
Confidence 99999999999999999999999887 5689999999999986643 222334455666676 99999999 99999
Q ss_pred HHHHHHHHHh
Q 010673 441 VFSRIIWAAE 450 (504)
Q Consensus 441 l~~~l~~~~~ 450 (504)
-|-++++.+.
T Consensus 160 PFl~LarKl~ 169 (216)
T KOG0096|consen 160 PFLWLARKLT 169 (216)
T ss_pred chHHHhhhhc
Confidence 9999999874
No 193
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=7.8e-15 Score=153.12 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=107.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCC--CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-----hhh-hhhhhhcc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKI-LSNKEALA 357 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~--~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-----~~~-~~~~~~~~ 357 (504)
+|+|+|.+|||||||+|+|++..... .+.+++++.. ...+.+. + ..+.+||++|.... ..+ ..+..+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~-~~~~~~~-~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRK-YGDAEWG-G-REFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCce-EEEEEEC-C-eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 58999999999999999999987543 2344555433 3345555 3 45788999985211 111 11245788
Q ss_pred cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-c
Q 010673 358 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-K 436 (504)
Q Consensus 358 ~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~ 436 (504)
.+|++++|+|++++.+... ..+...+.+. ++|+++|+||+|+...... ..+ ...+++.+++++||++ .
T Consensus 78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~------~~piilVvNK~D~~~~~~~---~~~-~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED-EEIAKWLRKS------GKPVILVANKIDGKKEDAV---AAE-FYSLGFGEPIPISAEHGR 146 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHHh------CCCEEEEEECccCCccccc---HHH-HHhcCCCCeEEEeCCcCC
Confidence 9999999999998755443 2334444433 7899999999998764432 222 3467776799999999 9
Q ss_pred CHHHHHHHHHHHHhC
Q 010673 437 DLNNVFSRIIWAAEH 451 (504)
Q Consensus 437 gi~el~~~l~~~~~~ 451 (504)
|++++++.+.+.+..
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999987743
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=4.6e-15 Score=158.86 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=106.9
Q ss_pred cCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhh------hhhhhhcccccEEEE
Q 010673 291 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALASCDVTIF 364 (504)
Q Consensus 291 G~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~------~~~~~~~~~ad~iil 364 (504)
|++|||||||+|+|++........++++.+.....+.++ + ..+.+||++|...+... .+.......+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~-~-~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ-G-EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC-C-eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999987644444544444444556665 3 34678999998654332 211111247999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 365 VYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 365 V~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
|+|+++.+. ...+..++.+. ++|+++|+||+|+.+......+.+.+++.++.+ ++++||++ .|++++++
T Consensus 79 VvDat~ler---~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIERLKD 148 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHHHHHH
Confidence 999987532 23334444432 799999999999976555555678899999986 99999999 99999999
Q ss_pred HHHHHH
Q 010673 444 RIIWAA 449 (504)
Q Consensus 444 ~l~~~~ 449 (504)
.+.+.+
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998765
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.61 E-value=1.8e-14 Score=157.85 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=111.0
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCC-CccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhh--------hhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAP-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKE 354 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~-T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~--------~~~ 354 (504)
.++|+++|+||||||||+|+|++.+......+ ++.+ .....+.. +...+.++|++|...+..... ...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 46899999999999999999998765432222 2222 22223443 335677899999754322100 112
Q ss_pred h--cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEe
Q 010673 355 A--LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 355 ~--~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
+ ...+|++++|+|+++.+.. ..+..++.+. ++|+++|+||+|+.+.+......+++.+.++.+ ++++|
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-VvpiS 149 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIPLV 149 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEEEE
Confidence 2 2489999999999886442 3355555544 799999999999986666556788899999987 99999
Q ss_pred ccc-cCHHHHHHHHHHHHh
Q 010673 433 MKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~ 450 (504)
|++ +|++++++.+.+...
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 999 999999999987653
No 196
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.60 E-value=6.3e-15 Score=124.45 Aligned_cols=173 Identities=18% Similarity=0.268 Sum_probs=137.6
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
.-.+||.++|++..|||||+-.+.++.+.+.+..|.+..+..+++.+.+-...+-+||-.|++++..+. .-..+++-+
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~l--Piac~dsva 95 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINML--PIACKDSVA 95 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccC--ceeecCcEE
Confidence 345799999999999999999999999887777788988888889988444444556666666555555 447789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC----CC--ccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK----PY--TMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~----~~--~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
|+|+||.+.+.++..+..|+.+.+... ...+| |+||+|-|+- .+ ..+..+.+.+|+.++.+ .+.+|+..
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~N---ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts~ 170 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLN---KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTSH 170 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccC---Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeeccc
Confidence 999999999999999999999998762 22344 6789999963 21 12234788899999997 89999998
Q ss_pred -cCHHHHHHHHHHHHhCCCCCCCCccc
Q 010673 436 -KDLNNVFSRIIWAAEHPHLNIPETET 461 (504)
Q Consensus 436 -~gi~el~~~l~~~~~~~~~~~~~~~~ 461 (504)
.|+..+|..+...+.+-...+|+...
T Consensus 171 sINv~KIFK~vlAklFnL~~ti~~~~~ 197 (205)
T KOG1673|consen 171 SINVQKIFKIVLAKLFNLPWTIPEILT 197 (205)
T ss_pred cccHHHHHHHHHHHHhCCceecccccc
Confidence 99999999999998887777775443
No 197
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.60 E-value=3.1e-14 Score=132.98 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=97.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCC-----CCCccceEEEEEEE-----------------------cC--C----
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENY-----APTTGEQYAVNVVD-----------------------QP--G---- 330 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~-----~~T~~~~~~~~~v~-----------------------~~--~---- 330 (504)
++|+++|+.|+|||||+..+.+....... .-|....+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47899999999999999999765211100 00111111000000 00 0
Q ss_pred CcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 331 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 331 ~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
....+.+||++|++.+.... ...+..+|++++|+|++++.........+..+... ...|+++|+||+|+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-----~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-----GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-----CCCcEEEEEEchhccCHH
Confidence 01466789999987664432 45678899999999999742111111222222222 135799999999997643
Q ss_pred cchH---HHHHHHHHh---CCCCeEEEeccc-cCHHHHHHHHHHHHhCC
Q 010673 411 MAVQ---DSARVTQEL---GIEPPIPVSMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 411 ~~~~---~~~~~~~~~---~~~~~~~vSak~-~gi~el~~~l~~~~~~~ 452 (504)
.... .++++.+.+ +. +++++||++ .|++++++.|.+.+..|
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 3222 333444332 33 489999999 99999999999876544
No 198
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.59 E-value=2.9e-14 Score=152.61 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=110.0
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCC---CCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~---~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
+.|+++|++++|||||+++|++.. +...+.++++.++....+.++ + ..+.+||++|++.+.... ...+.++|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-~-~~v~~iDtPGhe~f~~~~--~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-D-YRLGFIDVPGHEKFISNA--IAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-C-EEEEEEECCCHHHHHHHH--HhhhccCCE
Confidence 368999999999999999999744 222333344444444556666 3 677899999998775443 457789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccc---hHHHHHHHHHhCC---CCeEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMA---VQDSARVTQELGI---EPPIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~---~~~~~~~~~~~~~---~~~~~vSak 434 (504)
+++|+|+++....+. .+.+..+... ++| +++|+||+|+.+.... .+++.++.+.+++ .+++++||+
T Consensus 77 aILVVDa~~G~~~qT-~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 77 ALLVVDADEGVMTQT-GEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEEEECCCCCcHHH-HHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 999999998432222 2222223322 677 9999999999865432 2256666666542 258999999
Q ss_pred c-cCHHHHHHHHHHHHhC
Q 010673 435 S-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~~~ 451 (504)
+ .|++++++.|.+.+..
T Consensus 150 tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 150 TGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 9 9999999999887654
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=3.2e-14 Score=156.50 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=105.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-----hhh-hhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKI-LSNK 353 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-----~~~-~~~~ 353 (504)
....+|+|+|.+|||||||+|+|++...... .++++.+. ......+. + ..+.+||++|.+.. ..+ ..+.
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~-~~~~~~~~-~-~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDR-VSYDAEWA-G-TDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEE-EEEEEEEC-C-EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3456899999999999999999998875432 23344332 22234444 3 45677999986421 111 1124
Q ss_pred hhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEec
Q 010673 354 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 433 (504)
.++..+|++|+|+|+++..+..+ ..|...+... ++|+++|+||+|+..... ...++ ..+++..+++|||
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~~------~~pvIlV~NK~D~~~~~~---~~~~~-~~lg~~~~~~iSA 418 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRRA------GKPVVLAVNKIDDQASEY---DAAEF-WKLGLGEPYPISA 418 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHhc------CCCEEEEEECcccccchh---hHHHH-HHcCCCCeEEEEC
Confidence 56789999999999987543322 3455555533 899999999999865321 12222 2345556789999
Q ss_pred cc-cCHHHHHHHHHHHHhC
Q 010673 434 KS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~~ 451 (504)
++ .||++++++|.+.+..
T Consensus 419 ~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 419 MHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCchHHHHHHHHhccc
Confidence 99 9999999999988743
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=3.9e-14 Score=125.63 Aligned_cols=151 Identities=25% Similarity=0.244 Sum_probs=101.3
Q ss_pred EEcCCCchhhHHHHHHhcCCCCC-CCC-CCccceEEEEEEEcCCCcEEEEEEecCChhhHhhh-----hhhhhhcccccE
Q 010673 289 LFGPQNAGKSALLNSFLERPFSE-NYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALASCDV 361 (504)
Q Consensus 289 vvG~~~vGKSSLin~l~~~~~~~-~~~-~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~-----~~~~~~~~~ad~ 361 (504)
|+|++|+|||||++++++..... ... +++.. ......... ....+.+||++|....... ......+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTD-PVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEEC-CeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 58999999999999999876652 222 22222 222233333 2456788999986433211 112346789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHH---HHHHHHhCCCCeEEEeccc-cC
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDS---ARVTQELGIEPPIPVSMKS-KD 437 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSak~-~g 437 (504)
+++|+|++++.+..... +...... .+.|+++|+||+|+.......... ..........+++++||++ .|
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELLRE------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHHh------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 99999999988776644 4444443 389999999999998755433321 1122222233589999999 99
Q ss_pred HHHHHHHHHHH
Q 010673 438 LNNVFSRIIWA 448 (504)
Q Consensus 438 i~el~~~l~~~ 448 (504)
+++++++|.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 201
>PTZ00183 centrin; Provisional
Probab=99.58 E-value=1.1e-14 Score=130.24 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=120.7
Q ss_pred CcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHH
Q 010673 49 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 128 (504)
Q Consensus 49 ~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~ 128 (504)
..+++.++++++++|..||.|++|.|+.+|+..++..+ |.+++.+++..++..++.+ ++|.|++++|+.+....
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKD-----GSGKIDFEEFLDIMTKK 82 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCC-----CCCcEeHHHHHHHHHHH
Confidence 45889999999999999999999999999999998754 8889999999999999776 46679999999776654
Q ss_pred Hh-cCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhH-HHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 129 IE-KGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEA-VEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 129 ~~-~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~-~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
.. ....+.+..+|+.+|.|++|.|+.+++ . .+ ..++... ...+.++|..+|.|++|.|+++||..++..
T Consensus 83 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~-~l-------~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 83 LGERDPREEILKAFRLFDDDKTGKISLKNLKR-VA-------KELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred hcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHH-HH-------HHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 43 344467999999999999999998888 4 22 1112112 267889999999999999999999999987
Q ss_pred CCC
Q 010673 206 APE 208 (504)
Q Consensus 206 ~p~ 208 (504)
.|-
T Consensus 155 ~~~ 157 (158)
T PTZ00183 155 TNL 157 (158)
T ss_pred ccC
Confidence 763
No 202
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.58 E-value=2.9e-14 Score=131.62 Aligned_cols=155 Identities=21% Similarity=0.314 Sum_probs=106.3
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--------------------CCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------------------APTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--------------------~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
+..+|+++|+.++|||||+.+|+........ .-|... ....+........+.++|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~--~~~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL--SFISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS--EEEEEEBTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc--ccccccccccccceeeccccc
Confidence 4678999999999999999999965432110 112222 222233112457888999999
Q ss_pred hhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHH----H
Q 010673 343 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSA----R 418 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~----~ 418 (504)
+..+.... ...+..+|++|+|+|+.+.-.... ...+..+... ++|+++|+||+|+... ...+..+ .
T Consensus 80 ~~~f~~~~--~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~------~~p~ivvlNK~D~~~~-~~~~~~~~~~~~ 149 (188)
T PF00009_consen 80 HEDFIKEM--IRGLRQADIAILVVDANDGIQPQT-EEHLKILREL------GIPIIVVLNKMDLIEK-ELEEIIEEIKEK 149 (188)
T ss_dssp SHHHHHHH--HHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT------T-SEEEEEETCTSSHH-HHHHHHHHHHHH
T ss_pred ccceeecc--cceecccccceeeeeccccccccc-cccccccccc------ccceEEeeeeccchhh-hHHHHHHHHHHH
Confidence 97764433 446789999999999998755433 4555555544 8899999999999832 2222222 4
Q ss_pred HHHHhCCC-----CeEEEeccc-cCHHHHHHHHHHHH
Q 010673 419 VTQELGIE-----PPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 419 ~~~~~~~~-----~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
+.+.++.. +++++||++ .|+++|++.|.+.+
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 44555443 489999999 99999999998865
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.58 E-value=2.2e-14 Score=123.35 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=97.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChh-----hHhhhhhhhhhccccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKILSNKEALASCD 360 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~-----~~~~~~~~~~~~~~ad 360 (504)
||+++|+.|||||||+++|.+.+. .+..|....+.... +|++|.- .+.++ .....+||
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~------------IDTPGEyiE~~~~y~aL---i~ta~dad 65 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNT------------IDTPGEYIENPRFYHAL---IVTAQDAD 65 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccE------------EECChhheeCHHHHHHH---HHHHhhCC
Confidence 799999999999999999998764 34445554333333 5555541 12223 23456999
Q ss_pred EEEEEEeCCCccc-HHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 361 VTIFVYDSSDEYS-WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 361 ~iilV~D~s~~~s-~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
+|++|.|++++.+ |.. .+.. .-+.|+|-|.||+|+.......+..+++.+.-|+..+|++|+.+ +||
T Consensus 66 ~V~ll~dat~~~~~~pP--~fa~---------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFPP--GFAS---------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEEEEecCCCCCccCCc--hhhc---------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999999999754 221 1111 22689999999999996555566788899999999899999999 999
Q ss_pred HHHHHHHH
Q 010673 439 NNVFSRII 446 (504)
Q Consensus 439 ~el~~~l~ 446 (504)
++|.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 204
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.57 E-value=7e-14 Score=151.04 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=109.8
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCcc--ceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcc
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG--EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA 357 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~--~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~ 357 (504)
...+.+.|+|+|++++|||||+++|.+..+.....+++. .......+...+....+.+||++|++.+..++ ...+.
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr--~rg~~ 317 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR--SRGAN 317 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH--HHHHH
Confidence 356778999999999999999999998877654433222 11222223333234677889999998887776 45778
Q ss_pred cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--hHHHHH---HHHHhC-CCCeEEE
Q 010673 358 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSAR---VTQELG-IEPPIPV 431 (504)
Q Consensus 358 ~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~---~~~~~~-~~~~~~v 431 (504)
.+|++|+|+|+++....+.... +..+.. .++|+|+|+||+|+...... ...+.. +...++ ..+++++
T Consensus 318 ~aDiaILVVDA~dGv~~QT~E~-I~~~k~------~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 318 VTDIAILIIAADDGVKPQTIEA-INYIQA------ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred HCCEEEEEEECcCCCChhhHHH-HHHHHh------cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEE
Confidence 9999999999988543333222 233332 37999999999999763211 111111 122333 1248999
Q ss_pred eccc-cCHHHHHHHHHHHH
Q 010673 432 SMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~ 449 (504)
||++ .|+++|++.|...+
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 9999 99999999998765
No 205
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4.1e-14 Score=117.59 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=121.4
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
...++|+.+|-.++||||++..|.-+... +..||++ |.+.++.+.+ .++.+||-.|++.++.+| ..|+....+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplW--rhYy~gtqg 87 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLW--RHYYTGTQG 87 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHH--HhhccCCce
Confidence 34789999999999999999999877643 3447777 6777788772 677789988999999999 569999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEecc
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMK 434 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSak 434 (504)
+|||+|..+++..++++.-+..+..... ..+.|+++.+||.|++......+ +...+++. .+.++||.
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~e--m~~~~~LvlANkQDlp~A~~pqe----i~d~leLe~~r~~~W~vqp~~a~ 161 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDRE--MRDAIILILANKQDLPDAMKPQE----IQDKLELERIRDRNWYVQPSCAL 161 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHh--hhcceEEEEecCcccccccCHHH----HHHHhccccccCCccEeeccccc
Confidence 9999999999888887766666654432 45899999999999988655332 22223322 25778899
Q ss_pred c-cCHHHHHHHHHHHHh
Q 010673 435 S-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~~ 450 (504)
+ +|+.+-+.+|.+.+.
T Consensus 162 ~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 162 SGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cchhHHHHHHHHHhhcc
Confidence 9 999999999987664
No 206
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-16 Score=137.48 Aligned_cols=171 Identities=17% Similarity=0.275 Sum_probs=142.6
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCc-EEEEEEecCChhhHhhhhhhhhhcccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-KKTLILQEIPEEGVKKILSNKEALASC 359 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~-~~~li~d~~g~~~~~~~~~~~~~~~~a 359 (504)
....+++.|+|+-+|||||++.+++...|+..|..|++..+..+.+.+++.. .+..+||-.|++++..+. .-+++.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt--rVyykea 99 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT--RVYYKEA 99 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE--EEEecCC
Confidence 3567899999999999999999999999999898999998887777776322 233468889998887776 4589999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhc-cCCCCCCcEEEEEECCCCCCCccch--HHHHHHHHHhCCCCeEEEeccc-
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLG-EDSGYGVPCLLIASKDDLKPYTMAV--QDSARVTQELGIEPPIPVSMKS- 435 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~-~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~vSak~- 435 (504)
.+..+|||+++..+|+....|.+++..-. ......+|+|+.+||||........ ....++++++|+..++++|+|.
T Consensus 100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 99999999999999999999999886532 2234568899999999987755443 4888999999999999999999
Q ss_pred cCHHHHHHHHHHHHhCCC
Q 010673 436 KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~~~ 453 (504)
.||.|.-+.+++.+....
T Consensus 180 kni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVND 197 (229)
T ss_pred cChhHHHHHHHHHHHhhc
Confidence 999999999999875444
No 207
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.56 E-value=6.3e-15 Score=122.02 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=110.7
Q ss_pred chHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHh
Q 010673 51 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE 130 (504)
Q Consensus 51 l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~ 130 (504)
.++++..++++||.+||+.+||+|+.+.+++.+| ++|.+||++|+........++ ..+-.-|+|+.||-++...-.
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlR-alG~nPT~aeV~k~l~~~~~~---~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLR-ALGQNPTNAEVLKVLGQPKRR---EMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHH-HhcCCCcHHHHHHHHcCcccc---hhhhhhhhHHHHHHHHHHHHh
Confidence 4577779999999999999999999999999977 679999999988666554333 112345999999977754332
Q ss_pred ---cCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhh
Q 010673 131 ---KGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELED 201 (504)
Q Consensus 131 ---~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~ 201 (504)
.+..|+.-+.||.||++++|.|...+| + .+ +.|++... +++.++.+-. .|.+|.|+|++|.+
T Consensus 81 nk~q~t~edfvegLrvFDkeg~G~i~~aeLRh-vL-------ttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 81 NKDQGTYEDFVEGLRVFDKEGNGTIMGAELRH-VL-------TTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVK 147 (152)
T ss_pred ccccCcHHHHHHHHHhhcccCCcceeHHHHHH-HH-------HHHHhhccHHHHHHHHccc-cccCCcCcHHHHHH
Confidence 355688999999999999999999999 7 44 56777665 7777777765 48899999999954
No 208
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.56 E-value=1.5e-13 Score=130.96 Aligned_cols=155 Identities=20% Similarity=0.188 Sum_probs=99.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCC-CCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHh----hh-hhhhhhcccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----KI-LSNKEALASC 359 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~-~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~----~~-~~~~~~~~~a 359 (504)
+|+++|.+|||||||+|+|++..... .+..|+.. .....+.+. + ..+.+||++|..... .+ ......++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~-~~~g~~~~~-~-~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT-CVPGVLEYK-G-AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc-ceEEEEEEC-C-eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 78999999999999999999876432 23333322 233345555 3 566789998863221 11 1124578999
Q ss_pred cEEEEEEeCCCccc-HHHHHHHH--------------------------------------------HHHHHhc------
Q 010673 360 DVTIFVYDSSDEYS-WKRTKELL--------------------------------------------VEVARLG------ 388 (504)
Q Consensus 360 d~iilV~D~s~~~s-~~~~~~~~--------------------------------------------~~l~~~~------ 388 (504)
|++++|+|++++.. ...+.+.+ +++.-+.
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999987652 22222222 1110000
Q ss_pred ------------cCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 389 ------------EDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 389 ------------~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
......+|+++|+||+|+.... +...++.. ++++++||++ .|++++++.|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~----~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE----ELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCHH----HHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0012347999999999997532 33445443 3489999999 999999999998763
No 209
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.56 E-value=5.8e-14 Score=131.03 Aligned_cols=123 Identities=23% Similarity=0.318 Sum_probs=87.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccc-cEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF 364 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~a-d~iil 364 (504)
+|+++|++|||||||+++|....+..++.++ ...+....+...+....+.+||++|+..+...+ ..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~--~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL--LETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHH--HHHHhccCCEEEE
Confidence 6899999999999999999998876655333 222222222221223567789999998876665 4578888 99999
Q ss_pred EEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc
Q 010673 365 VYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 411 (504)
Q Consensus 365 V~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~ 411 (504)
|+|+++. .++..+..|+..+.........++|+++|+||+|+.....
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9999997 6777777776655432111135899999999999876443
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.56 E-value=1.7e-13 Score=123.07 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=97.6
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhh----------Hhhhhh-hhh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----------VKKILS-NKE 354 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~----------~~~~~~-~~~ 354 (504)
.|+++|.+|||||||+|.+++..+.....++.+.+.....+..+ + ...+||++|... +..... ...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-D--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-C--eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 38999999999999999999766655555555444444445544 2 666788877311 222111 011
Q ss_pred hcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH---HHHHHHH-HhCCCCeEE
Q 010673 355 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ---DSARVTQ-ELGIEPPIP 430 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---~~~~~~~-~~~~~~~~~ 430 (504)
.....+++++++|.++..+... ...+..+... +.|+++|+||+|+........ ......+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID-LEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 2235678999999987643322 2223333332 689999999999965443322 2222222 233446899
Q ss_pred Eeccc-cCHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~ 448 (504)
+||++ .|++++++.|.+.
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 99999 9999999999875
No 211
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.54 E-value=3.5e-14 Score=118.10 Aligned_cols=156 Identities=24% Similarity=0.294 Sum_probs=121.9
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
.++.+||.++|-.|+|||||++.|.+.+.... -||.+ |..+.++.+ |...+.+||-.|+..++..|+ .|+.+.|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyWs--NYyenvd 87 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYWS--NYYENVD 87 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhc-cccCC--cceEEEeec-CcEEEEEEecCCccccchhhh--hhhhccc
Confidence 47789999999999999999999988765432 24555 677888888 778888898888888899994 5999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEec
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSM 433 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSa 433 (504)
.+|+|+|.+|...|+++..-+-++.+... ...+|+.+.+||.|+..... .++.+.++++. .+-++||
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdlltaa~----~eeia~klnl~~lrdRswhIq~csa 161 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLLTAAK----VEEIALKLNLAGLRDRSWHIQECSA 161 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHHhhcc----hHHHHHhcchhhhhhceEEeeeCcc
Confidence 99999999999889887666655554321 46899999999999876443 34455555543 3578999
Q ss_pred cc-cCHHHHHHHHHHH
Q 010673 434 KS-KDLNNVFSRIIWA 448 (504)
Q Consensus 434 k~-~gi~el~~~l~~~ 448 (504)
.+ .|+..-.+++.+.
T Consensus 162 ls~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSN 177 (185)
T ss_pred ccccCccCcchhhhcC
Confidence 99 9988888887653
No 212
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.54 E-value=3.3e-14 Score=144.32 Aligned_cols=168 Identities=22% Similarity=0.282 Sum_probs=117.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
.+..+||+++|+.||||||||-.|+..++....++.... +.+- .++.....-..++|+...+..+... .+.+++||
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IP-advtPe~vpt~ivD~ss~~~~~~~l--~~EirkA~ 81 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIP-ADVTPENVPTSIVDTSSDSDDRLCL--RKEIRKAD 81 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccC-CccCcCcCceEEEecccccchhHHH--HHHHhhcC
Confidence 456789999999999999999999999987665442221 1111 1111122235566765443333332 45789999
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch--HHHHHHHHHhC-CCCeEEEeccc-
Q 010673 361 VTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV--QDSARVTQELG-IEPPIPVSMKS- 435 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~-~~~~~~vSak~- 435 (504)
+|++||+++++.+.+.+ ..|+..+++.... ..++|||+||||+|........ ....-+..++. +...++|||++
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~-~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGD-YHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCC-CccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 99999999999999887 6899999876321 3689999999999987655441 11222333322 33579999999
Q ss_pred cCHHHHHHHHHHHHhCCC
Q 010673 436 KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 436 ~gi~el~~~l~~~~~~~~ 453 (504)
.++.++|-...+.+..|.
T Consensus 161 ~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVIHPT 178 (625)
T ss_pred hhhHhhhhhhhheeeccC
Confidence 999999999988887774
No 213
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=6.3e-13 Score=119.50 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=110.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh----------hhHhhhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKILS 351 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~----------~~~~~~~~ 351 (504)
....-|+++|.+|||||||||+|+++.--...+.|.|.+...+.+.+.++ ..++|-||- +....+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i- 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI- 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH-
Confidence 46678999999999999999999997743334456666666777777732 445666653 1111111
Q ss_pred hhhhc---ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCC-
Q 010673 352 NKEAL---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEP- 427 (504)
Q Consensus 352 ~~~~~---~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~- 427 (504)
.+|+ .+-.++++++|+..+-.-.+ .+.++.+... ++|+++|+||+|.....+........++.++.++
T Consensus 98 -~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~~------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 98 -EEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLEL------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP 169 (200)
T ss_pred -HHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence 2233 24578899999988755444 2445555544 8999999999999987666556666676665541
Q ss_pred ----eEEEeccc-cCHHHHHHHHHHHHh
Q 010673 428 ----PIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 428 ----~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
++.+|+.+ .|++++...|.+.+.
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhh
Confidence 57788888 999999999988764
No 214
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.54 E-value=1.6e-13 Score=149.53 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=109.4
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
..+.+.|+|+|+.++|||||+++|.+..+.....+.+........+.++ + ..+.+||++|++.+..++ ...+..+|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~-~-~~ItfiDTPGhe~F~~m~--~rga~~aD 362 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN-G-GKITFLDTPGHEAFTAMR--ARGAQVTD 362 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC-C-EEEEEEECCCCccchhHH--HhhhhhCC
Confidence 5677899999999999999999999887765443333222333345555 3 567789999998887776 35678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc--chHHHH---HHHHHhCC-CCeEEEecc
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSA---RVTQELGI-EPPIPVSMK 434 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~---~~~~~~~~-~~~~~vSak 434 (504)
++|+|||+++...-+.... +..+.. .++|+|+|+||+|+..... ...++. .++..++. .+++++||+
T Consensus 363 iaILVVdAddGv~~qT~e~-i~~a~~------~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEA-INHAKA------AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEEEECCCCCCHhHHHH-HHHHHh------cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 9999999988533222222 233332 3799999999999965321 111111 12333431 248999999
Q ss_pred c-cCHHHHHHHHHHHH
Q 010673 435 S-KDLNNVFSRIIWAA 449 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~ 449 (504)
+ .|++++++.|....
T Consensus 436 tG~GI~eLle~I~~~~ 451 (787)
T PRK05306 436 TGEGIDELLEAILLQA 451 (787)
T ss_pred CCCCchHHHHhhhhhh
Confidence 9 99999999997643
No 215
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=8.1e-14 Score=131.89 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=112.6
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCC--CccceEEEEEEEcCCCcEEEEEEecCChhhHhhhh-----hhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL-----SNK 353 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~--T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~-----~~~ 353 (504)
.+....|.+||.||+|||||+|+++..+......+ |..+.+ -.+.+++. ..+-+-|-+|.-.-.++. .-.
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~i--G~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FL 269 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHI--GTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFL 269 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhccCCcccccceeeecccc--ceeecccc-ceeEeccCccccccccccCcccHHHH
Confidence 45566799999999999999999998887554433 333322 24555532 333343444331111110 014
Q ss_pred hhcccccEEEEEEeCCCc---ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEE
Q 010673 354 EALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 430 (504)
..+..|+.++||+|++.+ ..++.+..+..++..+.. ...+.|.++|+||+|+++.+. ..+.++++.+.-+.+++
T Consensus 270 rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek-~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~p 346 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK-GLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVP 346 (366)
T ss_pred HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh-hhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEE
Confidence 577899999999999998 777777777777765532 156899999999999974221 13578888888777899
Q ss_pred Eeccc-cCHHHHHHHHHHH
Q 010673 431 VSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~ 448 (504)
+||++ +|+.+++..|.+.
T Consensus 347 vsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeeccccchHHHHHHHhhc
Confidence 99999 9999999888653
No 216
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.6e-14 Score=122.58 Aligned_cols=166 Identities=18% Similarity=0.226 Sum_probs=122.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCC---CCC--CCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPF---SEN--YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 355 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~---~~~--~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~ 355 (504)
.+..+.|+|+|..|+|||||+.++..... ..- ..-|+.......++++. .....+||-.|++..+++| ..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw--~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLW--KKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHH--HHH
Confidence 34567899999999999999998864322 111 11123333455567776 3677789988998889999 569
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH--HHHHHHHHhCCC--CeEEE
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ--DSARVTQELGIE--PPIPV 431 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~--~~~~~~~~~~~~--~~~~v 431 (504)
|..|+++|+++|+++++.|+.....++.+..+.. ..++|+++.+||.|+.......+ ..-..++..+-+ ++.+|
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~--leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEK--LEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH--hcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 9999999999999999999888777777765432 56899999999999987544333 111223333332 47999
Q ss_pred eccc-cCHHHHHHHHHHHHhCC
Q 010673 432 SMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~~~~ 452 (504)
||.+ +||++-.+++...+...
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999 99999999999987654
No 217
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.52 E-value=3.5e-13 Score=144.49 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=111.4
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCC-------CCCC------CCccceEEEEEE--Ec---CCCcEEEEEEecCChh
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFS-------ENYA------PTTGEQYAVNVV--DQ---PGGNKKTLILQEIPEE 344 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~-------~~~~------~T~~~~~~~~~v--~~---~~~~~~~li~d~~g~~ 344 (504)
+.-+|+|+|+.++|||||+.+|+...-. ..+. .+.+.++....+ .+ ++....+.+||++|+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3447999999999999999999863211 0110 111222222222 22 3234567789999998
Q ss_pred hHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhC
Q 010673 345 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 424 (504)
Q Consensus 345 ~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 424 (504)
.+...+ ..++..+|++|+|+|+++....+....|..... .++|+++|+||+|+..... .....++...++
T Consensus 86 dF~~~v--~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-------~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg 155 (600)
T PRK05433 86 DFSYEV--SRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIG 155 (600)
T ss_pred HHHHHH--HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-------CCCCEEEEEECCCCCcccH-HHHHHHHHHHhC
Confidence 876655 457889999999999999877666555544322 2789999999999865321 223455666666
Q ss_pred CC--CeEEEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 425 IE--PPIPVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 425 ~~--~~~~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
+. .++++||++ .|++++++.|.+.+..|.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 64 379999999 999999999998875553
No 218
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.51 E-value=2.7e-13 Score=144.25 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=99.2
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC--C--------------CcEEEEEEecCChhhHh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--G--------------GNKKTLILQEIPEEGVK 347 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~--~--------------~~~~~li~d~~g~~~~~ 347 (504)
..-|+|+|++|+|||||+|+|.+..+.....+++..++....+..+ . ....+.+||++|++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999987765443322111111111111 0 01136789999998887
Q ss_pred hhhhhhhhcccccEEEEEEeCCCc---ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc-------------
Q 010673 348 KILSNKEALASCDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------- 411 (504)
Q Consensus 348 ~~~~~~~~~~~ad~iilV~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------- 411 (504)
.++ ..+++.+|++++|+|+++. .+++.+ ..+.. .++|+++|+||+|+.....
T Consensus 84 ~l~--~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l~~------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 84 NLR--KRGGALADLAILIVDINEGFKPQTQEAL----NILRM------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred HHH--HHHHhhCCEEEEEEECCcCCCHhHHHHH----HHHHH------cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 776 4477899999999999974 444332 22332 2789999999999964210
Q ss_pred -chH---H--------HHHHHH------------HhC-CCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 412 -AVQ---D--------SARVTQ------------ELG-IEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 412 -~~~---~--------~~~~~~------------~~~-~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
... . ..++.+ .++ ..+++++||++ .|+++|++.|...+
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 0 011111 111 12589999999 99999999987644
No 219
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=124.82 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=120.1
Q ss_pred cccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChh-----hHhhhh--h
Q 010673 279 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----GVKKIL--S 351 (504)
Q Consensus 279 ~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~-----~~~~~~--~ 351 (504)
....+.+.|+|.|.||||||||++++++.+......|.|...+.+..++.+ ...++++||+|-- ..+.+. .
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHH
Confidence 445688999999999999999999999999877766755555677667665 3678899999861 111111 1
Q ss_pred hhhhcccccEEEEEEeCCCc--ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeE
Q 010673 352 NKEALASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPI 429 (504)
Q Consensus 352 ~~~~~~~ad~iilV~D~s~~--~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 429 (504)
....-.-.++|+|++|.|.. -+.+....++.++... . +.|+++|.||+|........+ .......-+...+.
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~----f-~~p~v~V~nK~D~~~~e~~~~-~~~~~~~~~~~~~~ 314 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL----F-KAPIVVVINKIDIADEEKLEE-IEASVLEEGGEEPL 314 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh----c-CCCeEEEEecccccchhHHHH-HHHHHHhhcccccc
Confidence 11122347899999999864 5567778888888875 2 489999999999886544333 33334444444478
Q ss_pred EEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 430 PVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 430 ~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
.+|+.. .+++.+.+.+...+..+.
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHhhchh
Confidence 888888 899999988888765553
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.9e-13 Score=140.37 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=116.7
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhh------Hhhhhhhhhhc-
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKKILSNKEAL- 356 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~------~~~~~~~~~~~- 356 (504)
..+|+++|+||||||||+|+|+|.+......|....+.....+... | ..+.++|-+|.-. .+.+. .+++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~-~-~~i~ivDLPG~YSL~~~S~DE~Va--r~~ll 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK-G-HEIEIVDLPGTYSLTAYSEDEKVA--RDFLL 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec-C-ceEEEEeCCCcCCCCCCCchHHHH--HHHHh
Confidence 3469999999999999999999998876665655554555556666 3 3366777766521 12222 2233
Q ss_pred -ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 357 -ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 357 -~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
.++|+++-|+|+++.+. --.+--++.+. +.|++++.|++|..+.+-..-+.+++.+.+|+| ++++||++
T Consensus 79 ~~~~D~ivnVvDAtnLeR---nLyltlQLlE~------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA~~ 148 (653)
T COG0370 79 EGKPDLIVNVVDATNLER---NLYLTLQLLEL------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVAKR 148 (653)
T ss_pred cCCCCEEEEEcccchHHH---HHHHHHHHHHc------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEeec
Confidence 46799999999998643 23333445544 899999999999988776666899999999998 99999999
Q ss_pred -cCHHHHHHHHHHHHhCCC
Q 010673 436 -KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 436 -~gi~el~~~l~~~~~~~~ 453 (504)
.|++++.+.+.+......
T Consensus 149 g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 149 GEGLEELKRAIIELAESKT 167 (653)
T ss_pred CCCHHHHHHHHHHhccccc
Confidence 999999999998765544
No 221
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.49 E-value=1.4e-12 Score=120.67 Aligned_cols=146 Identities=17% Similarity=0.166 Sum_probs=93.1
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCC------CCCC-----C---CCccceEEEEEEEcCCCcEEEEEEecCChhhHhhh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPF------SENY-----A---PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 349 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~------~~~~-----~---~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~ 349 (504)
.++|+++|..++|||||+++|+.... ...+ . ...+.+.....+.+..+...+.++|++|+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 37899999999999999999986410 0000 0 01111222222333323466788999998665332
Q ss_pred hhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccch----HHHHHHHHHhC
Q 010673 350 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARVTQELG 424 (504)
Q Consensus 350 ~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~----~~~~~~~~~~~ 424 (504)
. ...+..+|++++|+|++..-.-+. ...+..+... ++| +|+|.||+|+....... +++.++.++++
T Consensus 82 ~--~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 82 M--ITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred H--HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 2 456789999999999987543322 3444555543 666 78999999996433322 24566666665
Q ss_pred C----CCeEEEeccc-cCH
Q 010673 425 I----EPPIPVSMKS-KDL 438 (504)
Q Consensus 425 ~----~~~~~vSak~-~gi 438 (504)
+ .+++++||++ .|+
T Consensus 153 ~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 153 FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ccccCCeEEEeeCccccCC
Confidence 4 2589999999 764
No 222
>PTZ00184 calmodulin; Provisional
Probab=99.48 E-value=1.5e-13 Score=121.34 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=115.4
Q ss_pred CcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHH
Q 010673 49 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 128 (504)
Q Consensus 49 ~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~ 128 (504)
.++++++.+.++++|..+|.|++|.|+.+|+..++.. +|.+++.+++..+++.++.+ ++|.|++++|+.++...
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDAD-----GNGTIDFPEFLTLMARK 76 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcC-----CCCcCcHHHHHHHHHHh
Confidence 4578999999999999999999999999999998764 58889999999999998776 46679999999877655
Q ss_pred HhcC-CchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhH-HHHHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 129 IEKG-RLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEA-VEFLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 129 ~~~~-~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~-~~~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
.... ..+.+..+|+.||.|++|.|+.+++ . .+. .++... .+.+..+|+.+|.+++|.|+++||..++.
T Consensus 77 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~-~l~-------~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 77 MKDTDSEEEIKEAFKVFDRDGNGFISAAELRH-VMT-------NLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred ccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHH-HHH-------HHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4332 3356889999999999999999888 5 221 111111 26688899999999999999999987764
No 223
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.48 E-value=6e-13 Score=124.77 Aligned_cols=145 Identities=22% Similarity=0.231 Sum_probs=92.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC--------------------------------CCCccceEEEEEEEcCCCcE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY--------------------------------APTTGEQYAVNVVDQPGGNK 333 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~--------------------------------~~T~~~~~~~~~v~~~~~~~ 333 (504)
+|+|+|.+|+|||||+++|+...-.... .+++.+ .....+... ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~-~~~~~~~~~--~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITID-VAYRYFSTP--KR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCee-cceeEEecC--Cc
Confidence 5899999999999999999864332210 111111 122234443 34
Q ss_pred EEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-
Q 010673 334 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA- 412 (504)
Q Consensus 334 ~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~- 412 (504)
.+.+||++|+..+.... ...+..+|++++|+|++++..-.. ......+... ...++|+|+||+|+......
T Consensus 78 ~~~liDTpG~~~~~~~~--~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-----~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 78 KFIIADTPGHEQYTRNM--VTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-----GIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred eEEEEECCcHHHHHHHH--HHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-----CCCcEEEEEEchhcccCCHHH
Confidence 66789999987654322 346789999999999987643222 2222222222 13457889999999753221
Q ss_pred ----hHHHHHHHHHhCCC--CeEEEeccc-cCHHHH
Q 010673 413 ----VQDSARVTQELGIE--PPIPVSMKS-KDLNNV 441 (504)
Q Consensus 413 ----~~~~~~~~~~~~~~--~~~~vSak~-~gi~el 441 (504)
..+.+++.+.++.. +++++||++ .|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 22556667777754 389999999 998754
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.47 E-value=1.8e-12 Score=139.37 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=101.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCC---CCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPF---SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~---~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
-|+++|..++|||||+++|++.+. .......+........+...++ ..+.+||++|++.+.... ...+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m--~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNM--LAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHH--HHHhhcCCEE
Confidence 589999999999999999997542 2222111111222223444433 456789999998774332 4567899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccch---HHHHHHHHHhCC--CCeEEEeccc-
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV---QDSARVTQELGI--EPPIPVSMKS- 435 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~---~~~~~~~~~~~~--~~~~~vSak~- 435 (504)
++|+|+++...-+. .+.+..+... ++| +++|+||+|+.++.... +++.++....++ .+++++||++
T Consensus 79 lLVVda~eg~~~qT-~ehl~il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 79 LLVVACDDGVMAQT-REHLAILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEEEECCCCCcHHH-HHHHHHHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 99999987432222 2223333322 455 68999999997643322 245555555553 3589999999
Q ss_pred cCHHHHHHHHHHHH
Q 010673 436 KDLNNVFSRIIWAA 449 (504)
Q Consensus 436 ~gi~el~~~l~~~~ 449 (504)
.|+++|++.|.+..
T Consensus 152 ~gI~~L~~~L~~~~ 165 (614)
T PRK10512 152 RGIDALREHLLQLP 165 (614)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 225
>PRK10218 GTP-binding protein; Provisional
Probab=99.44 E-value=3.8e-12 Score=135.94 Aligned_cols=162 Identities=13% Similarity=0.155 Sum_probs=111.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhc--CCCCCCC------------CCCccceEEEEEEEcCCCcEEEEEEecCChhhHh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLE--RPFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 347 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~--~~~~~~~------------~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~ 347 (504)
.+.-+|+|+|..++|||||+++|+. +.+.... ..+.+.++..+...+..+...+.+||++|+..+.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 2232211 1234444444444444345778899999998887
Q ss_pred hhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--hHHHHHHHHH---
Q 010673 348 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQE--- 422 (504)
Q Consensus 348 ~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~--- 422 (504)
..+ ..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. ..++.++...
T Consensus 83 ~~v--~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~ 153 (607)
T PRK10218 83 GEV--ERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA 153 (607)
T ss_pred HHH--HHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCc
Confidence 665 458899999999999987643333 4444554433 7899999999998754321 2233333322
Q ss_pred ----hCCCCeEEEeccc-c----------CHHHHHHHHHHHHhCCC
Q 010673 423 ----LGIEPPIPVSMKS-K----------DLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 423 ----~~~~~~~~vSak~-~----------gi~el~~~l~~~~~~~~ 453 (504)
..+ +++++||++ . |+..+++.|.+.+-.|.
T Consensus 154 ~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 154 TDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 223 389999999 7 58899999988875553
No 226
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.44 E-value=1e-12 Score=136.62 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=97.1
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC--------------------------------CCCCccceEEEEEEEc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN--------------------------------YAPTTGEQYAVNVVDQ 328 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--------------------------------~~~T~~~~~~~~~v~~ 328 (504)
.+..++|+++|.+++|||||+++|+...-... ..+++.+ .....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d-~~~~~~~~ 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTID-LAHKKFET 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccce-eeeEEEec
Confidence 45678999999999999999999984332110 1122222 22223444
Q ss_pred CCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHH-HHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 329 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 329 ~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
+ ...+.+||++|++.+.... ...+..+|++++|+|++++.++.. ...++..+... ...|+++|+||+|+.
T Consensus 82 ~--~~~i~liDtpG~~~~~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-----~~~~iivviNK~Dl~ 152 (425)
T PRK12317 82 D--KYYFTIVDCPGHRDFVKNM--ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-----GINQLIVAINKMDAV 152 (425)
T ss_pred C--CeEEEEEECCCcccchhhH--hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-----CCCeEEEEEEccccc
Confidence 3 4677889999986653322 335688999999999987322211 12223333322 134799999999997
Q ss_pred CCcc-----chHHHHHHHHHhCCC----CeEEEeccc-cCHHHHH
Q 010673 408 PYTM-----AVQDSARVTQELGIE----PPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 408 ~~~~-----~~~~~~~~~~~~~~~----~~~~vSak~-~gi~el~ 442 (504)
.... ..+++.++.+..++. +++++||++ .|++++.
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 5222 123566667667652 489999999 9998744
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.43 E-value=5e-12 Score=119.46 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=97.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCC------------ccceE---------E-----------------EEEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPT------------TGEQY---------A-----------------VNVVD 327 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T------------~~~~~---------~-----------------~~~v~ 327 (504)
||+++|+.++|||||+++|+.+.+....... .+.+. . ...++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976653211000 00000 0 01111
Q ss_pred cCCCcEEEEEEecCChhhHhhhhhhhhhc--ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCC
Q 010673 328 QPGGNKKTLILQEIPEEGVKKILSNKEAL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 328 ~~~~~~~~li~d~~g~~~~~~~~~~~~~~--~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
. +...+.++|++|++.+..-. ...+ ..+|++++|+|+.....-.. ..++..+... ++|+++|.||+|
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~--~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~------~ip~ivvvNK~D 149 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTT--LFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL------NIPVFVVVTKID 149 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHH--HHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCEEEEEECcc
Confidence 1 12456679999997763322 2233 37999999999987654332 4455555544 789999999999
Q ss_pred CCCCccchHHHHHHHHHhC----------------------------CCCeEEEeccc-cCHHHHHHHHHH
Q 010673 406 LKPYTMAVQDSARVTQELG----------------------------IEPPIPVSMKS-KDLNNVFSRIIW 447 (504)
Q Consensus 406 l~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vSak~-~gi~el~~~l~~ 447 (504)
+.+.........++.+.+. ..+++.+||.+ .|+++|.+.|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 8765444333444433332 22689999999 999999988754
No 228
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.43 E-value=3e-12 Score=136.92 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=108.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcC--CCCCCC------------CCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhh
Q 010673 286 RCLLFGPQNAGKSALLNSFLER--PFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 351 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~--~~~~~~------------~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~ 351 (504)
+|+|+|+.++|||||+++|+.. .+.... ....+.++..+...+..+...+.+||++|+..+....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev- 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV- 81 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH-
Confidence 6999999999999999999863 221110 0112223333322222234678889999998876544
Q ss_pred hhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc--chHHHHHHHHH-------
Q 010673 352 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--AVQDSARVTQE------- 422 (504)
Q Consensus 352 ~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~------- 422 (504)
..+++.+|++++|+|+++.. ......|+..+... ++|+++|+||+|+...+. ...+...+...
T Consensus 82 -~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~ 153 (594)
T TIGR01394 82 -ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ 153 (594)
T ss_pred -HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc
Confidence 45789999999999998743 34446677777654 789999999999875432 22244444432
Q ss_pred hCCCCeEEEeccc-c----------CHHHHHHHHHHHHhCCC
Q 010673 423 LGIEPPIPVSMKS-K----------DLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 423 ~~~~~~~~vSak~-~----------gi~el~~~l~~~~~~~~ 453 (504)
+.++ ++++||++ . |+..+|+.|.+.+-.|.
T Consensus 154 l~~p-vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 154 LDFP-IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccCc-EEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 2343 89999999 6 79999999999876553
No 229
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=9e-12 Score=109.56 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=113.6
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC--------CCC--CccceEEEEEEEcCCCcEEEEEEecCChhhHhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN--------YAP--TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL 350 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--------~~~--T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~ 350 (504)
.-...||+|.|+.++||||++++++......+ +.. ++........+.+. +....-+++++|++++..+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH
Confidence 34568999999999999999999998774221 111 01111222234455 44666778999999999998
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh--CCCCe
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL--GIEPP 428 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~ 428 (504)
.. ..+.+.++|+++|.+.+..+ ....++..+... ..+|+++.+||.|+..... .+.++++.+.. +.+ .
T Consensus 86 ~~--l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-----~~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~~~~~-v 155 (187)
T COG2229 86 EI--LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-----NPIPVVVAINKQDLFDALP-PEKIREALKLELLSVP-V 155 (187)
T ss_pred HH--HhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-----cCCCEEEEeeccccCCCCC-HHHHHHHHHhccCCCc-e
Confidence 54 77899999999999999998 556666666542 2399999999999987554 33344443333 454 8
Q ss_pred EEEeccc-cCHHHHHHHHHHH
Q 010673 429 IPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 429 ~~vSak~-~gi~el~~~l~~~ 448 (504)
++++|.. ++..+.++.+...
T Consensus 156 i~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeecccchhHHHHHHHHHhh
Confidence 9999998 9999888888765
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.41 E-value=2.4e-12 Score=121.23 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=76.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC-----------CCC------ccceEEEEE--EEc---CCCcEEEEEEecCCh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY-----------APT------TGEQYAVNV--VDQ---PGGNKKTLILQEIPE 343 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~-----------~~T------~~~~~~~~~--v~~---~~~~~~~li~d~~g~ 343 (504)
+|+|+|..++|||||+++|+........ ..+ .+.++.... +.+ ++....+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999976543221 001 111111111 111 223456778999998
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
..+.... ..++..+|++++|+|+++..++.. ..++...... +.|+++|+||+|+.
T Consensus 82 ~~f~~~~--~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~------~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEV--AAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE------GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHH--HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECcccC
Confidence 7765443 457889999999999998876643 4455554432 68999999999986
No 231
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.41 E-value=1.3e-11 Score=117.60 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=104.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH----hh-hhhhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK-ILSNKEA 355 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~-~~~~~~~ 355 (504)
.....+|++||.|+||||||+++|++........+.+..+.....+.+. | ..++++|.+|.-.- .+ -.+....
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~-g-a~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK-G-AQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec-C-ceEEEEcCcccccCcccCCCCcceeeee
Confidence 3456799999999999999999999987655444433222333345665 3 56677777754111 11 0112557
Q ss_pred cccccEEEEEEeCCCccc-HHHH--------------------------------------------HHHHHHHHHhc--
Q 010673 356 LASCDVTIFVYDSSDEYS-WKRT--------------------------------------------KELLVEVARLG-- 388 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s-~~~~--------------------------------------------~~~~~~l~~~~-- 388 (504)
.++||+|++|+|+....+ .+.+ ..++++..-+.
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 799999999999986543 2111 11111111100
Q ss_pred ----------------cCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 389 ----------------EDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 389 ----------------~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
..+..-+|.++|.||+|+... +....+.+.. ..+.+||+. .|+++|.+.|.+.+.-
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~----e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL----EELERLARKP---NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH----HHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 001224699999999999872 2344444444 489999999 9999999999998843
No 232
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.41 E-value=3.2e-12 Score=122.79 Aligned_cols=170 Identities=18% Similarity=0.108 Sum_probs=111.3
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH----hhh-hhhhhhc
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKI-LSNKEAL 356 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~~-~~~~~~~ 356 (504)
+-..-|.+||.||+|||||++.++..+......|.|+..-..-.+.+. +...+++-|-+|--.- .++ .+-+.++
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI 235 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHI 235 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHH
Confidence 344568999999999999999999988766544422211122224443 3333444444432100 000 1114577
Q ss_pred ccccEEEEEEeCCCccc---HHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHHhCCCCeEEEe
Q 010673 357 ASCDVTIFVYDSSDEYS---WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQELGIEPPIPVS 432 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s---~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~vS 432 (504)
.+|.++++|+|++..+- .++...+..++..+.. ...++|.++|+||+|+....+..+ ..+.+.+..+...++++|
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 89999999999986542 5566666666666532 156899999999999766555444 555666666665344499
Q ss_pred ccc-cCHHHHHHHHHHHHhCCC
Q 010673 433 MKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~~~~~~ 453 (504)
|.+ .|+++|...+.+.+....
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 999 999999999999876553
No 233
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.41 E-value=6.5e-12 Score=134.28 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=98.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCC----CccceEEEEEE-EcCCCc-----------EEEEEEecCChhhH
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAP----TTGEQYAVNVV-DQPGGN-----------KKTLILQEIPEEGV 346 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~----T~~~~~~~~~v-~~~~~~-----------~~~li~d~~g~~~~ 346 (504)
+.+.|+++|++|+|||||+++|.+..+.....+ +.+..+..... .-..+. ..+.+||++|++.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 445799999999999999999988765443332 22221111000 000010 01568999999888
Q ss_pred hhhhhhhhhcccccEEEEEEeCCC---cccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-----------
Q 010673 347 KKILSNKEALASCDVTIFVYDSSD---EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA----------- 412 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~---~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~----------- 412 (504)
..++ ...+..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+......
T Consensus 85 ~~~~--~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 85 TNLR--KRGGALADIAILVVDINEGFQPQTIEAIN----ILKR------RKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred HHHH--HHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH------cCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 7765 346788999999999997 45554432 2322 27899999999998531100
Q ss_pred ------hH-------HHHHHHHHhCC--------------CCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 413 ------VQ-------DSARVTQELGI--------------EPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 413 ------~~-------~~~~~~~~~~~--------------~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
.. +........++ .+++++||++ .|++++++.+...+
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 01111122221 2489999999 99999999886543
No 234
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.40 E-value=3e-12 Score=133.13 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=98.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCC--CCC------------------------C-----CCCCccceEEEEEEEcC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERP--FSE------------------------N-----YAPTTGEQYAVNVVDQP 329 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~--~~~------------------------~-----~~~T~~~~~~~~~v~~~ 329 (504)
....++|+++|..++|||||+++|+... ... . ....+..+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 4567899999999999999999998521 110 0 0011122223333443
Q ss_pred CCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHH--HHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 330 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRT--KELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 330 ~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
+...+.+||++|++.+.... ...+..+|++++|+|+++.+++... ..++.... . ....|+++|+||+|+.
T Consensus 83 -~~~~i~iiDtpGh~~f~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~----~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKNM--ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-T----LGINQLIVAINKMDSV 154 (426)
T ss_pred -CCeEEEEEECCCHHHHHHHH--HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-H----cCCCeEEEEEEChhcc
Confidence 34677899999987664322 3457899999999999998543211 11122222 2 2245799999999997
Q ss_pred CCccc-----hHHHHHHHHHhCCC----CeEEEeccc-cCHHHHH
Q 010673 408 PYTMA-----VQDSARVTQELGIE----PPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 408 ~~~~~-----~~~~~~~~~~~~~~----~~~~vSak~-~gi~el~ 442 (504)
..... ..++.++++.+++. +++++||++ .|+.+++
T Consensus 155 ~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 155 NYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 42221 23667777777742 489999999 9998633
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.39 E-value=9e-12 Score=128.49 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=98.9
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCC----CC-CccceEEEE------------EEEc----CC------CcEEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENY----AP-TTGEQYAVN------------VVDQ----PG------GNKKT 335 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~-T~~~~~~~~------------~v~~----~~------~~~~~ 335 (504)
..++|+++|.+++|||||+++|.+....... .. |....+... .+.. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999764321100 00 111110000 0001 00 12456
Q ss_pred EEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch--
Q 010673 336 LILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-- 413 (504)
Q Consensus 336 li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-- 413 (504)
.+||++|++.+...+ ...+..+|++++|+|+++........+.+..+... ...|+++|+||+|+.......
T Consensus 83 ~liDtPGh~~f~~~~--~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-----gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 83 SFVDAPGHETLMATM--LSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-----GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEECCCHHHHHHHH--HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-----CCCeEEEEEEccccCCHHHHHHH
Confidence 789999997774433 44667899999999999753111222223333322 235799999999998643322
Q ss_pred -HHHHHHHHHh---CCCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 414 -QDSARVTQEL---GIEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 414 -~~~~~~~~~~---~~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.++.++.+.. +. +++++||++ .|++++++.|...+.
T Consensus 156 ~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence 2334444433 33 389999999 999999999988654
No 236
>PRK12736 elongation factor Tu; Reviewed
Probab=99.38 E-value=2e-11 Score=125.43 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=103.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCC------------C-C-CCCccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------------N-Y-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~------------~-~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+..++|+++|..++|||||+++|++..... . . ....+.+.......+..+...+.++|++|++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567899999999999999999998631100 0 0 001112222223334334456788999998766
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccch----HHHHHHHH
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARVTQ 421 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~----~~~~~~~~ 421 (504)
.... ...+..+|++++|+|+++...-+. ...+..+... ++| +|+|+||+|+.+..+.. +++.++.+
T Consensus 89 ~~~~--~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 89 VKNM--ITGAAQMDGAILVVAATDGPMPQT-REHILLARQV------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHH--HHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 3322 445678999999999987533322 3344444433 678 67899999997543322 25566666
Q ss_pred HhCC----CCeEEEeccc-c--------CHHHHHHHHHHHHh
Q 010673 422 ELGI----EPPIPVSMKS-K--------DLNNVFSRIIWAAE 450 (504)
Q Consensus 422 ~~~~----~~~~~vSak~-~--------gi~el~~~l~~~~~ 450 (504)
..++ .+++++||++ . ++.+|++.|.+.+.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 6665 2589999998 4 57788888777653
No 237
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.38 E-value=2.1e-11 Score=120.74 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=42.6
Q ss_pred CCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH-HHHHHHh-CCCCCCC
Q 010673 394 GVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS-RIIWAAE-HPHLNIP 457 (504)
Q Consensus 394 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~-~l~~~~~-~~~~~~~ 457 (504)
.+|+|+|+||+|+...... .+.+....+...++++||+. .+++++.+ .+.+.+- .|.....
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~---~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~ 277 (318)
T cd01899 214 SKPMVIAANKADIPDAENN---ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEIT 277 (318)
T ss_pred CCcEEEEEEHHHccChHHH---HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceec
Confidence 4799999999998643221 22333444445689999999 99999998 5888873 3444433
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.37 E-value=2e-11 Score=125.52 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=102.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcC-------CCCC----CC---CCCccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLER-------PFSE----NY---APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~-------~~~~----~~---~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+..++|+++|.+++|||||+++|++. .+.. .. ....+.+.......+..+...+.++|++|+..+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 466789999999999999999999862 1100 00 001112222222333323456788999998665
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEE-EEEECCCCCCCccch----HHHHHHHH
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMAV----QDSARVTQ 421 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~----~~~~~~~~ 421 (504)
.... ...+..+|++++|+|+.+....+. .+.+..+... ++|.+ +|+||+|+....+.. .++..+.+
T Consensus 89 ~~~~--~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 89 VKNM--ITGAAQMDGAILVVSAADGPMPQT-REHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHH--HhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 3222 446678999999999987533322 3444444433 67865 679999997533222 25666777
Q ss_pred HhCC----CCeEEEeccc-c----------CHHHHHHHHHHHHh
Q 010673 422 ELGI----EPPIPVSMKS-K----------DLNNVFSRIIWAAE 450 (504)
Q Consensus 422 ~~~~----~~~~~vSak~-~----------gi~el~~~l~~~~~ 450 (504)
.++. .+++++||++ . ++.+|++.|.+.+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 7664 2489999988 5 57788888776543
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.37 E-value=1.2e-11 Score=114.86 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=92.9
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccc---eEEEEEEEcCCCcEEEEEEecCChhhH----hhhhhhhhhc
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE---QYAVNVVDQPGGNKKTLILQEIPEEGV----KKILSNKEAL 356 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~---~~~~~~v~~~~~~~~~li~d~~g~~~~----~~~~~~~~~~ 356 (504)
.++|+++|.+|||||||+|+|++.........+++. +.....+..+ ....+.+||++|.... ..... ...+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~-~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLE-EMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHH-HhCc
Confidence 378999999999999999999986653322111111 0111112222 2234567888886321 11111 2235
Q ss_pred ccccEEEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc------------chHHHHHHH---
Q 010673 357 ASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM------------AVQDSARVT--- 420 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~--- 420 (504)
..+|++++|.|. + |... ..|+..+... +.|+++|+||+|+..... ..+..++.+
T Consensus 79 ~~~d~~l~v~~~--~--~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 79 SEYDFFIIISST--R--FSSNDVKLAKAIQCM------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred cCcCEEEEEeCC--C--CCHHHHHHHHHHHHh------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 788999998542 2 2222 4556666543 689999999999853211 111222222
Q ss_pred -HHh--CCCCeEEEecc--c-cCHHHHHHHHHHHHh
Q 010673 421 -QEL--GIEPPIPVSMK--S-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 421 -~~~--~~~~~~~vSak--~-~gi~el~~~l~~~~~ 450 (504)
... ..++++.+|+. . .|+..+.+.|...+-
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 222 24468999998 5 899999999988774
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.37 E-value=1.2e-11 Score=127.45 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=98.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC----CC-CccceEEEEE------------EE----cC--C----CcE
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY----AP-TTGEQYAVNV------------VD----QP--G----GNK 333 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~-T~~~~~~~~~------------v~----~~--~----~~~ 333 (504)
.+..++|+++|+.++|||||+.+|.+....... .+ |....+.... +. .+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456689999999999999999999764211111 11 1111110000 00 00 0 024
Q ss_pred EEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcc-cHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc
Q 010673 334 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 412 (504)
Q Consensus 334 ~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 412 (504)
.+.+||++|++.+..-. ......+|++++|+|++++. ..+. ...+..+... ...|+++|+||+|+.+....
T Consensus 86 ~i~liDtPG~~~f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~-----~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 86 RVSFVDAPGHETLMATM--LSGAALMDGAILVIAANEPCPQPQT-KEHLMALDII-----GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEEEECCCHHHHHHHH--HHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHc-----CCCcEEEEEEeeccccchhH
Confidence 66789999987664322 34556789999999999753 2222 2222223222 13479999999999764432
Q ss_pred h---HHHHHHHHHh---CCCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 413 V---QDSARVTQEL---GIEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 413 ~---~~~~~~~~~~---~~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
. +.+..+.+.+ +. +++++||++ .|+++|++.|.+.+.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENA-PIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHhccccCCCC-eEEEEECCCCcCHHHHHHHHHHhCC
Confidence 2 2344444432 23 489999999 999999999988764
No 241
>CHL00071 tufA elongation factor Tu
Probab=99.34 E-value=4.3e-11 Score=123.59 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=94.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCC------CCC--------CCccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE------NYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~------~~~--------~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+..++|+++|.+++|||||+++|++..-.. .+. ...+.+.......+..+...+.++|++|+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4567899999999999999999999742110 000 00111122122223323456778999998665
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccch----HHHHHHHH
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAV----QDSARVTQ 421 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~----~~~~~~~~ 421 (504)
.... ...+..+|++++|+|+.....-+. ...+..+... ++| +|+|.||+|+....+.. .++..+.+
T Consensus 89 ~~~~--~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 89 VKNM--ITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV------GVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred HHHH--HHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 3222 446789999999999987543322 3444444433 678 77899999998644322 25666666
Q ss_pred HhCC----CCeEEEeccc-cC
Q 010673 422 ELGI----EPPIPVSMKS-KD 437 (504)
Q Consensus 422 ~~~~----~~~~~vSak~-~g 437 (504)
..++ .+++++||.+ .|
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HhCCCCCcceEEEcchhhccc
Confidence 6654 2589999987 63
No 242
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.33 E-value=2e-11 Score=116.55 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC-----CC-----------CccceEEEEEEEcCCCcEEEEEEecCChhhHhhh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY-----AP-----------TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI 349 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~-----~~-----------T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~ 349 (504)
+|+++|.+|+|||||+++|+...-.... .. ..+.++......+..+...+.+||++|+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999864221110 00 1111122222222223467888999999776554
Q ss_pred hhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC
Q 010673 350 LSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 426 (504)
Q Consensus 350 ~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 426 (504)
. ..+++.+|++++|+|+++.... ....++..+.+. ++|+++++||+|+.... ..+...++...++..
T Consensus 81 ~--~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~ 147 (237)
T cd04168 81 V--ERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSD 147 (237)
T ss_pred H--HHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccCCC-HHHHHHHHHHHHCCC
Confidence 4 4578999999999999987554 335566665543 78999999999988643 234566666777654
No 243
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.33 E-value=1.5e-11 Score=116.25 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=88.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCC---------------------------C-----CCCCccceEEEEEEEcCCCcE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSE---------------------------N-----YAPTTGEQYAVNVVDQPGGNK 333 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~---------------------------~-----~~~T~~~~~~~~~v~~~~~~~ 333 (504)
+|+++|.+++|||||+.+|+...-.. . ..+++.+ .....+... ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d-~~~~~~~~~--~~ 77 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTID-VGLAKFETE--KY 77 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCee-cceEEEeeC--Ce
Confidence 48999999999999999996321100 0 0112211 222234443 36
Q ss_pred EEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCccc---H---HHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 334 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 334 ~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
.+.+||++|+..+.... ...+..+|++|+|+|+++... | ......+..... ....|+++|+||+|+.
T Consensus 78 ~i~liDtpG~~~~~~~~--~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 78 RFTILDAPGHRDFVPNM--ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-----LGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEEECCChHHHHHHH--HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-----cCCCeEEEEEEccccc
Confidence 77889999986554322 446788999999999998521 1 111222222222 2246899999999997
Q ss_pred CC---cc-c---hHHHHHHHHHhCC----CCeEEEeccc-cCHH
Q 010673 408 PY---TM-A---VQDSARVTQELGI----EPPIPVSMKS-KDLN 439 (504)
Q Consensus 408 ~~---~~-~---~~~~~~~~~~~~~----~~~~~vSak~-~gi~ 439 (504)
.. .. . ...+..+.+.++. .+++++||++ .|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 42 11 1 1234444566654 2489999999 9986
No 244
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=4.1e-11 Score=116.30 Aligned_cols=132 Identities=19% Similarity=0.185 Sum_probs=84.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCC---------C-Cc----------cceEEEEEEEcCCCcEEEEEEecCChh
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYA---------P-TT----------GEQYAVNVVDQPGGNKKTLILQEIPEE 344 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~---------~-T~----------~~~~~~~~v~~~~~~~~~li~d~~g~~ 344 (504)
-+|+|+|.+|+|||||+++|+...-..... + |+ +.++......+..+...+.+||++|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998532211110 1 11 111222223333344778889999987
Q ss_pred hHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhC
Q 010673 345 GVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 424 (504)
Q Consensus 345 ~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 424 (504)
.+.... ...++.+|++|+|+|+++..... ...++..... .++|+++++||+|+..... .....++...++
T Consensus 83 df~~~~--~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~------~~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDT--YRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL------RGIPIITFINKLDREGRDP-LELLDEIEEELG 152 (267)
T ss_pred HHHHHH--HHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh------cCCCEEEEEECCccCCCCH-HHHHHHHHHHHC
Confidence 665432 45778999999999998764322 2444444433 3789999999999866432 223455566666
Q ss_pred CC
Q 010673 425 IE 426 (504)
Q Consensus 425 ~~ 426 (504)
.+
T Consensus 153 ~~ 154 (267)
T cd04169 153 ID 154 (267)
T ss_pred CC
Confidence 54
No 245
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=6.3e-11 Score=121.87 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=93.0
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcC------CCCC------C-C-CCCccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSE------N-Y-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~------~~~~------~-~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+..++|+++|..++|||||+++|++. .... . . ....+.+.....+.+..+...+.+||++|++.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 456789999999999999999999842 1000 0 0 001111222233444434466789999999776
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEE-EEEECCCCCCCccch----HHHHHHHH
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMAV----QDSARVTQ 421 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~----~~~~~~~~ 421 (504)
.... ...+..+|++++|+|+++....+. .+.+..+... ++|.+ +|+||+|+.+..+.. ++++++++
T Consensus 89 ~~~~--~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 89 VKNM--ITGAAQMDGAILVVSATDGPMPQT-REHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHH--HHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 4322 345578999999999987533332 3334444433 67755 689999997643322 25677777
Q ss_pred HhCC----CCeEEEeccc
Q 010673 422 ELGI----EPPIPVSMKS 435 (504)
Q Consensus 422 ~~~~----~~~~~vSak~ 435 (504)
.++. .+++++||++
T Consensus 160 ~~~~~~~~~~ii~vSa~~ 177 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALK 177 (394)
T ss_pred hcCCCccCccEEECcccc
Confidence 7764 3489999987
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.30 E-value=3.7e-11 Score=101.57 Aligned_cols=107 Identities=24% Similarity=0.363 Sum_probs=71.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-------hhhhhhhhhc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL 356 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-------~~~~~~~~~~ 356 (504)
+|+|+|.+|||||||+|+|++.+.... ..+++... ....+.++ + ..+.++|++|-... .........+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~-~-~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYN-N-KKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEET-T-EEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeec-e-eeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 699999999999999999998654322 23444443 33445555 3 45568999985221 1122234566
Q ss_pred ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEEC
Q 010673 357 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASK 403 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK 403 (504)
..+|++++|+|++++.. +....+++.+. . +.|+++|.||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-~------~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK-N------KKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH-T------TSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh-c------CCCEEEEEcC
Confidence 89999999999877422 23344555553 3 8999999998
No 247
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.29 E-value=9.8e-12 Score=112.40 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=116.5
Q ss_pred CcchHHHHHHHHHhHhhhcCC-CCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCC-CCHHhHHHHHH
Q 010673 49 QTLKPRCVRALKRIFIICDHD-MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLG-LTLSGFLFLHA 126 (504)
Q Consensus 49 ~~l~~~~~~~l~~~F~~~D~d-~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~-i~~~~Fl~l~~ 126 (504)
..++..++.+|.+.|..+|.+ ++|.|+.+|+..... +..+|-.+.|-+++ +.+ .++. |+|++|+.+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~--~~~Np~~~rI~~~f---~~~-----~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE--LALNPLADRIIDRF---DTD-----GNGDPVDFEEFVRLLS 94 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH--HhcCcHHHHHHHHH---hcc-----CCCCccCHHHHHHHHh
Confidence 568899999999999999999 999999999988763 45566655544444 333 2344 99999999999
Q ss_pred HHHhcCCch-hHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 127 LFIEKGRLE-TTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 127 ~~~~~~~~e-~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
.|......+ .+.=+|+.||.|++|+|+.+++ . .+..-.+.....+.... +.+..+|.++|.|+||+|+++||.+++
T Consensus 95 ~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~-iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 95 VFSPKASKREKLRFAFRVYDLDGDGFISREELKQ-ILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred hhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHH-HHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 988877665 7999999999999999999998 5 33211111111134444 777789999999999999999999999
Q ss_pred ccCCCC
Q 010673 204 LTAPES 209 (504)
Q Consensus 204 ~~~p~~ 209 (504)
...|.+
T Consensus 174 ~~~P~~ 179 (187)
T KOG0034|consen 174 EKQPDL 179 (187)
T ss_pred HcCccH
Confidence 988763
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.3e-10 Score=118.35 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=114.7
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCC-CcEEEEEEecCChhhHhhhhhhhhhcccccE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDV 361 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~-~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ 361 (504)
+.+-|+++|+-..|||||+..+-+.+......+.+.-.+....+.++. +...+.++||+|++.|..+.. .-..-+|+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa--RGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA--RGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh--cCCccccE
Confidence 456799999999999999999999988776655444444444555541 246888999999999988873 45578999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC--------CeEEEec
Q 010673 362 TIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE--------PPIPVSM 433 (504)
Q Consensus 362 iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~vSa 433 (504)
+++|+|+.|.---+.+ +-++.++.. +.|++++.||+|+++... .....-..++|+. .++++||
T Consensus 82 aILVVa~dDGv~pQTi-EAI~hak~a------~vP~iVAiNKiDk~~~np--~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 82 AILVVAADDGVMPQTI-EAINHAKAA------GVPIVVAINKIDKPEANP--DKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEEEccCCcchhHH-HHHHHHHHC------CCCEEEEEecccCCCCCH--HHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 9999999986443432 234444433 899999999999985332 2222222333433 4799999
Q ss_pred cc-cCHHHHHHHHHHHHhC
Q 010673 434 KS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~~ 451 (504)
++ .|+++|++.|.-++..
T Consensus 153 ~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 153 KTGEGIDELLELILLLAEV 171 (509)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 99 9999999999876643
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=99.28 E-value=1.4e-10 Score=120.97 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=94.4
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCC------CCC--------CCCccceEE--EEEEEcCCCcEEEEEEecCCh
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENY--------APTTGEQYA--VNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~------~~~--------~~T~~~~~~--~~~v~~~~~~~~~li~d~~g~ 343 (504)
..+..++|+++|.+++|||||+++|++.... ..+ ....+.+.. ...+..+ ...+.++|++|+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCH
Confidence 3567899999999999999999999952111 100 001111122 2223333 356778999999
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccchH----HHHH
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAVQ----DSAR 418 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~----~~~~ 418 (504)
+.+..-. ...+..+|++++|+|+.+...-+. .+++..+... ++| +++++||+|+....+..+ ++..
T Consensus 155 ~~f~~~~--~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 155 ADYVKNM--ITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV------GVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred HHHHHHH--HHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc------CCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 7763322 446678999999999987644333 4445555433 678 788999999976433222 5556
Q ss_pred HHHHhCCC----CeEEEeccc-cC
Q 010673 419 VTQELGIE----PPIPVSMKS-KD 437 (504)
Q Consensus 419 ~~~~~~~~----~~~~vSak~-~g 437 (504)
+.+..+++ +++++|+.+ .+
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHhcCCCcCcceEEEEEcccccc
Confidence 66665442 488999987 53
No 250
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.28 E-value=1.5e-11 Score=119.50 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=85.5
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCC-----CCC--------C---Cccce--EEEEEEEcCCCcEEEEEEecCChhhHh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSE-----NYA--------P---TTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVK 347 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~-----~~~--------~---T~~~~--~~~~~v~~~~~~~~~li~d~~g~~~~~ 347 (504)
+|+++|.+|+|||||+++|+...-.. ... + ..+.+ .....+.+. ...+.++|++|...+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 48999999999999999997421100 000 0 00111 122234444 3677789999986654
Q ss_pred hhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-
Q 010673 348 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE- 426 (504)
Q Consensus 348 ~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~- 426 (504)
... ...++.+|++++|+|+++...-.. ..++..+... ++|+++++||+|+.... ......++...++..
T Consensus 79 ~~~--~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~------~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 79 IEV--ERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY------NVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANP 148 (270)
T ss_pred HHH--HHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc
Confidence 433 568899999999999987643332 3445555443 78999999999987532 122344455555433
Q ss_pred --CeEEEecc
Q 010673 427 --PPIPVSMK 434 (504)
Q Consensus 427 --~~~~vSak 434 (504)
..+++|+.
T Consensus 149 ~~~~~Pisa~ 158 (270)
T cd01886 149 VPLQLPIGEE 158 (270)
T ss_pred eEEEeccccC
Confidence 34666665
No 251
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.3e-11 Score=103.27 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=112.6
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
...+++++|-.|+|||+++.++.-.+.. ...||++. .+..+... .....+||-.|+...+..|+ .|+.+.|++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigf--nve~v~yK--NLk~~vwdLggqtSirPyWR--cYy~dt~av 89 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGF--NVETVPYK--NLKFQVWDLGGQTSIRPYWR--CYYADTDAV 89 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCc--Cccccccc--cccceeeEccCcccccHHHH--HHhcccceE
Confidence 5678999999999999999998766643 34467764 44455554 25667888888878888884 599999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-------CeEEEeccc
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-------PPIPVSMKS 435 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~vSak~ 435 (504)
|+|+|.+|.+........+..+... .+..+..+++++||.|........ +....+++. .++++||.+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E--~eLq~a~llv~anKqD~~~~~t~~----E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQE--EELQHAKLLVFANKQDYSGALTRS----EVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhcc--HhhcCceEEEEeccccchhhhhHH----HHHHHhChHHHhhheeEEEeecccc
Confidence 9999999987665544433333322 124578899999999986533222 222223322 379999999
Q ss_pred -cCHHHHHHHHHHHHhC
Q 010673 436 -KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 436 -~gi~el~~~l~~~~~~ 451 (504)
.|+++.++|+.+.+..
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 9999999999987754
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=99.27 E-value=2e-10 Score=118.08 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=101.2
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCC------CCC-----CC---CccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFS------ENY-----AP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~------~~~-----~~---T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+..++|+++|..++|||||+++|++.... ..+ .+ ..+.+.......+..+...+.++|++|+..+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356789999999999999999999973110 000 00 1111222222333323456778999998655
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEE-EEEECCCCCCCccch----HHHHHHHH
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL-LIASKDDLKPYTMAV----QDSARVTQ 421 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~----~~~~~~~~ 421 (504)
.... ...+..+|++++|+|+.+...-+ ...++..+... ++|.+ ++.||+|+....... .++..+..
T Consensus 89 ~~~~--~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 89 VKNM--ITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHH--HhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 3322 34678999999999998754332 24445555543 68876 689999997533222 24555555
Q ss_pred HhCC----CCeEEEeccc-c----------CHHHHHHHHHHHH
Q 010673 422 ELGI----EPPIPVSMKS-K----------DLNNVFSRIIWAA 449 (504)
Q Consensus 422 ~~~~----~~~~~vSak~-~----------gi~el~~~l~~~~ 449 (504)
..++ .+++++||++ . ++.++++.|.+.+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 5554 2589999987 4 5677887777654
No 253
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.27 E-value=3.5e-10 Score=115.37 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=46.8
Q ss_pred CCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHH-HHHHHHHHH-hCCCCCCCCcccccchh
Q 010673 394 GVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNN-VFSRIIWAA-EHPHLNIPETETGRNRK 466 (504)
Q Consensus 394 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~e-l~~~l~~~~-~~~~~~~~~~~~~~~~~ 466 (504)
.+|+++|+||+|+..... ....+.+. +...++++||+. .++++ +.+.+.+.+ ..|..++++.-.+++.+
T Consensus 217 ~KPvI~VlNK~D~~~~~~---~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r 288 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE---NIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK 288 (396)
T ss_pred CCCEEEEEEchhcccchH---HHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH
Confidence 589999999999764222 12233333 455689999999 99999 888888877 44555555544444443
No 254
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.26 E-value=9e-11 Score=114.48 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=88.4
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCC----------CCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-------
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSEN----------YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------- 346 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~----------~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~------- 346 (504)
.++|+++|.+|+|||||+|+|++..+... ..+|+........+..++....+.+||++|-...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999999887543 2334444333444554533346778999883111
Q ss_pred h-----------hhhhh-h-----hhcc--cccEEEEEEeCCCcc-cHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCC
Q 010673 347 K-----------KILSN-K-----EALA--SCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 406 (504)
Q Consensus 347 ~-----------~~~~~-~-----~~~~--~ad~iilV~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 406 (504)
. ..... . ..+. .+|+++++++.+... +-.+ ...++.+. .++|+++|+||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l~-------~~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRLS-------KRVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHHh-------ccCCEEEEEECCCc
Confidence 0 00000 0 1222 578889998876521 1111 33344443 26899999999999
Q ss_pred CCCccc---hHHHHHHHHHhCCCCeEEEeccc
Q 010673 407 KPYTMA---VQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 407 ~~~~~~---~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
....+. ...+.+.+..++++ ++..+...
T Consensus 156 l~~~e~~~~k~~i~~~l~~~~i~-~~~~~~~~ 186 (276)
T cd01850 156 LTPEELKEFKQRIMEDIEEHNIK-IYKFPEDE 186 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCc-eECCCCCc
Confidence 764433 22677778888877 66665543
No 255
>PRK09866 hypothetical protein; Provisional
Probab=99.25 E-value=3.7e-10 Score=117.76 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=72.5
Q ss_pred EEEEEEecCChhhH--hhhh-hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC
Q 010673 333 KKTLILQEIPEEGV--KKIL-SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 409 (504)
Q Consensus 333 ~~~li~d~~g~~~~--~~~~-~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 409 (504)
..++++|++|-... ..+. .....+..+|+|+||+|+++..+..+ ..+.+.+.+. ..+.|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~----~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV----GQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc----CCCCCEEEEEEcccCCCc
Confidence 34567899887432 1111 11347899999999999988655544 3445555543 223699999999998643
Q ss_pred cc-chHHHHHHHH----HhC--CCCeEEEeccc-cCHHHHHHHHHHH
Q 010673 410 TM-AVQDSARVTQ----ELG--IEPPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 410 ~~-~~~~~~~~~~----~~~--~~~~~~vSak~-~gi~el~~~l~~~ 448 (504)
.. ..+.+..+.. +.+ ...+++|||++ .|++++++.|.+.
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 22 1223333322 222 34589999999 9999999999873
No 256
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.24 E-value=1.5e-10 Score=112.95 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=83.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC-----CCCc-------------cceEEEEEEEcCCCcEEEEEEecCChhhHh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY-----APTT-------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVK 347 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~-----~~T~-------------~~~~~~~~v~~~~~~~~~li~d~~g~~~~~ 347 (504)
+|+++|.+|+|||||+++|+........ .+++ ........+.+. ...+.+||++|...+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 4899999999999999999854321111 0110 011122233443 3567789999986554
Q ss_pred hhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC
Q 010673 348 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 426 (504)
Q Consensus 348 ~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 426 (504)
... ...+..+|++++|+|+++...... ...+..+... ++|+++|+||+|+.... .......+...++.+
T Consensus 79 ~~~--~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~~------~~p~iivvNK~D~~~~~-~~~~~~~l~~~~~~~ 147 (268)
T cd04170 79 GET--RAALRAADAALVVVSAQSGVEVGT-EKLWEFADEA------GIPRIIFINKMDRERAD-FDKTLAALQEAFGRP 147 (268)
T ss_pred HHH--HHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCccCCCC-HHHHHHHHHHHhCCC
Confidence 433 457889999999999998765543 2333344432 78999999999987642 233556666666654
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.24 E-value=4.5e-11 Score=107.63 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=73.1
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEc-CCCcEEEEEEecCChhhHhh-hhhhhhhcccccEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKK-ILSNKEALASCDVT 362 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~-~~~~~~~li~d~~g~~~~~~-~~~~~~~~~~ad~i 362 (504)
..|+++|++|+|||+|+.+|..+....+.... .... .+.+ ......+.++|.||+.+.+. +.....+...+.+|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46999999999999999999998654433211 2111 1222 11334567899999987754 32222357889999
Q ss_pred EEEEeCCC-cccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 363 IFVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 363 ilV~D~s~-~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
|||+|++. +....++.+++..+..........+|++|++||.|+....
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999974 3445555555555544332224589999999999997644
No 258
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.23 E-value=2.9e-10 Score=107.07 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=75.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC--CCC------------ccceEE--EEEEEcC--------CCcEEEEEEecC
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY--APT------------TGEQYA--VNVVDQP--------GGNKKTLILQEI 341 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T------------~~~~~~--~~~v~~~--------~~~~~~li~d~~ 341 (504)
+|+|+|..++|||||+.+|+...-.... ..+ .+.++. ...+.+. +....+.+||++
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999854321100 000 000011 1112222 124567789999
Q ss_pred ChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 342 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 342 g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
|+..+.... ..+++.+|++++|+|+++..+.+. ...+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~--~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEV--TAALRLCDGALVVVDAVEGVCVQT-ETVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHH--HHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCcc
Confidence 998775544 568899999999999998876655 3444444432 68999999999986
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.9e-10 Score=114.02 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=120.2
Q ss_pred hcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcc
Q 010673 278 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA 357 (504)
Q Consensus 278 ~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~ 357 (504)
....++++-|.|+|.-.-|||||+..|-+........+.+.-.+..-.+.+++| ..+.++|++|+..|..|. .+-..
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMR--aRGA~ 223 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMR--ARGAN 223 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHH--hccCc
Confidence 344567788999999999999999999999887766554444445556777766 778899999999898887 44667
Q ss_pred cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHH------HHhCCC-CeEE
Q 010673 358 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT------QELGIE-PPIP 430 (504)
Q Consensus 358 ~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~-~~~~ 430 (504)
-+|.+++|+.+.|.---+.+ +-+...+ ..++|+|+..||+|.+... .....+++. +.+|-. ..++
T Consensus 224 vtDIvVLVVAadDGVmpQT~-EaIkhAk------~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTL-EAIKHAK------SANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred cccEEEEEEEccCCccHhHH-HHHHHHH------hcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEE
Confidence 89999999999986544432 2233333 3489999999999987533 222333332 344433 5799
Q ss_pred Eeccc-cCHHHHHHHHHHHHh
Q 010673 431 VSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 431 vSak~-~gi~el~~~l~~~~~ 450 (504)
+||++ +|++.|-+.+.-++.
T Consensus 296 iSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred eecccCCChHHHHHHHHHHHH
Confidence 99999 999999999987763
No 260
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.23 E-value=1.6e-10 Score=125.88 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=94.5
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC------------CCCCccceE---------------------EEEEEE
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN------------YAPTTGEQY---------------------AVNVVD 327 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~------------~~~T~~~~~---------------------~~~~v~ 327 (504)
.+..++|+++|.+|+|||||+++|+...-... ..+++++.+ ....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 45568999999999999999999997543322 112221111 112233
Q ss_pred cCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 328 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 328 ~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
.+ ...+.++|++|++.+.... ...+..+|++++|+|++....-+. .+.+..+... ...|+++|+||+|+.
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~~--~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-----~~~~iivvvNK~D~~ 170 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRNM--VTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-----GIRHVVLAVNKMDLV 170 (632)
T ss_pred cC--CceEEEEECCChHHHHHHH--HHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-----CCCeEEEEEEecccc
Confidence 33 3466789999987663322 345789999999999976533222 1222223222 136789999999997
Q ss_pred CCcc-c-h---HHHHHHHHHhCCC--CeEEEeccc-cCHHH
Q 010673 408 PYTM-A-V---QDSARVTQELGIE--PPIPVSMKS-KDLNN 440 (504)
Q Consensus 408 ~~~~-~-~---~~~~~~~~~~~~~--~~~~vSak~-~gi~e 440 (504)
+... . . .+..++.+.+++. +++++||++ .|+.+
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 5222 1 1 2344555666664 489999999 99874
No 261
>PLN03127 Elongation factor Tu; Provisional
Probab=99.22 E-value=4.3e-10 Score=116.76 Aligned_cols=161 Identities=15% Similarity=0.112 Sum_probs=98.4
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcC------CCCCCC--------CCCccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLER------PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~------~~~~~~--------~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+..++|+++|..++|||||+++|++. .....+ ....+.+.......+..+...+.++|++|+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 466789999999999999999999732 111110 000111122222333334467788999998765
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccchH----HHHHHHH
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAVQ----DSARVTQ 421 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~----~~~~~~~ 421 (504)
..-. ...+..+|++++|+|+++...-+. .+.+..+... ++| +|+|.||+|+.+..+..+ ++.++..
T Consensus 138 ~~~~--~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 138 VKNM--ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV------GVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred HHHH--HHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3222 234567999999999987643332 4444445443 788 578999999976433222 3334444
Q ss_pred HhCC----CCeEEEeccc----cC-------HHHHHHHHHHHHh
Q 010673 422 ELGI----EPPIPVSMKS----KD-------LNNVFSRIIWAAE 450 (504)
Q Consensus 422 ~~~~----~~~~~vSak~----~g-------i~el~~~l~~~~~ 450 (504)
.+++ .+++++|+.+ .| +.+|++.|.+.+.
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 4443 2478888763 33 6777777776643
No 262
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.21 E-value=1.9e-10 Score=118.57 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=90.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCC------------CCCc-------------------c--ceEEEEEEEcCCC
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENY------------APTT-------------------G--EQYAVNVVDQPGG 331 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~------------~~T~-------------------~--~~~~~~~v~~~~~ 331 (504)
++|+|+|..++|||||+.+|+...-.... ..++ + .+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 47999999999999999999743321100 0111 0 11222233333
Q ss_pred cEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc
Q 010673 332 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM 411 (504)
Q Consensus 332 ~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~ 411 (504)
...+.++|++|++.+.... ...+..+|++++|+|++....-+. .+.+..+... ...++++|+||+|+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~--~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~-----~~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNM--ATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL-----GIRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred CeEEEEEeCCCHHHHHHHH--HHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc-----CCCcEEEEEEecccccchH
Confidence 3577789999997763322 346789999999999987643222 1222222222 2346899999999975332
Q ss_pred c-----hHHHHHHHHHhCCC--CeEEEeccc-cCHHH
Q 010673 412 A-----VQDSARVTQELGIE--PPIPVSMKS-KDLNN 440 (504)
Q Consensus 412 ~-----~~~~~~~~~~~~~~--~~~~vSak~-~gi~e 440 (504)
. .+....+.+.+++. +++++||++ .|+++
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1 12344455555553 489999999 99886
No 263
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.21 E-value=2.2e-10 Score=120.06 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=92.9
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC------------CCCc-------------------c--ceEEEEEEE
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APTT-------------------G--EQYAVNVVD 327 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~------------~~T~-------------------~--~~~~~~~v~ 327 (504)
.+..++|+|+|.+++|||||+.+|+...-.... .+++ + .+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999855322111 1111 1 112222233
Q ss_pred cCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 328 QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 328 ~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
.+ ...+.++|++|++.+..-. ...+..+|++++|+|++....-+....+ ..+... ...|+++|+||+|+.
T Consensus 104 ~~--~~~i~~iDTPGh~~f~~~~--~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-----g~~~iIvvvNKiD~~ 173 (474)
T PRK05124 104 TE--KRKFIIADTPGHEQYTRNM--ATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-----GIKHLVVAVNKMDLV 173 (474)
T ss_pred cC--CcEEEEEECCCcHHHHHHH--HHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-----CCCceEEEEEeeccc
Confidence 33 3567789999987663322 3346899999999999875322211111 122221 135789999999997
Q ss_pred CCccc-hH----HHHHHHHHhC---CCCeEEEeccc-cCHHHHH
Q 010673 408 PYTMA-VQ----DSARVTQELG---IEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 408 ~~~~~-~~----~~~~~~~~~~---~~~~~~vSak~-~gi~el~ 442 (504)
..... .. +...+.+..+ ..+++++||++ .|+.++-
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 53221 11 3333444444 13589999999 9998753
No 264
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.18 E-value=7.4e-10 Score=117.12 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=76.8
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC---------C-----------CccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA---------P-----------TTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~---------~-----------T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
+..+|+|+|.+++|||||+++|+...-..... . ..+.++....+.+..+...+.+||++|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 44589999999999999999997321110000 0 112222222222322346778899999
Q ss_pred hhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC
Q 010673 343 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
+..+.... ...+..+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 89 ~~df~~~~--~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~------~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDT--YRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL------RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHH--HHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh------cCCCEEEEEECCcccc
Confidence 97765433 4577899999999999886433 23455555443 3899999999999864
No 265
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=116.43 Aligned_cols=163 Identities=15% Similarity=0.045 Sum_probs=111.1
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhh-----H--hhhhhh
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-----V--KKILSN 352 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~-----~--~~~~~~ 352 (504)
...+.-+++|+|.||||||||+|.++.........+.|...+.+..+.+. ..+.+++|++|.-. . ..+...
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHH
Confidence 45677789999999999999999999888776665544433444334332 34556677776411 1 111111
Q ss_pred hhhcccccEEEEEEeCCCc--ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHH----HHHHHHHhCCC
Q 010673 353 KEALASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQD----SARVTQELGIE 426 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~--~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~----~~~~~~~~~~~ 426 (504)
....+--.+|+|+.|+|.. .|......++..+... ..+.|+|+|+||+|+.......+. .+.+...-+++
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH----hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 1122234579999999865 5667777888888776 569999999999999877666543 33333344454
Q ss_pred CeEEEeccc-cCHHHHHHHHHHHH
Q 010673 427 PPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 427 ~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
++++|+.+ .|+-++....++.+
T Consensus 318 -v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 318 -VVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred -EEEecccchhceeeHHHHHHHHH
Confidence 89999999 99988777776654
No 266
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.5e-10 Score=99.53 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=105.8
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
.-|++++|-.|+|||||++.|....... +.||..++-. .+.+. ......+|-.|+...+..| ..++..+|+++
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTSE--~l~Ig--~m~ftt~DLGGH~qArr~w--kdyf~~v~~iv 92 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE--ELSIG--GMTFTTFDLGGHLQARRVW--KDYFPQVDAIV 92 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccc-cCCCcCCChH--Hheec--CceEEEEccccHHHHHHHH--HHHHhhhceeE
Confidence 3489999999999999999998776543 3344433211 24444 3566677878887777777 67999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-----HHHHHHHHhC--------CC--Ce
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-----DSARVTQELG--------IE--PP 428 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-----~~~~~~~~~~--------~~--~~ 428 (504)
+.+|+-|.+.|.+.+.-++.+.... ...+.|+++.+||+|.+......+ .+.+++...+ .. ..
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e--~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDE--SLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHH--HHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 9999999999988877666665431 135899999999999987653322 2222222221 11 24
Q ss_pred EEEeccc-cCHHHHHHHHHH
Q 010673 429 IPVSMKS-KDLNNVFSRIIW 447 (504)
Q Consensus 429 ~~vSak~-~gi~el~~~l~~ 447 (504)
+.||... .|..+.|.++..
T Consensus 171 fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEccCccceeeeehhh
Confidence 6677777 776666666554
No 267
>PRK13351 elongation factor G; Reviewed
Probab=99.16 E-value=5.7e-10 Score=122.95 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=79.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCC-------------C-------CCCCccceEEEEEEEcCCCcEEEEEEecC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-------------N-------YAPTTGEQYAVNVVDQPGGNKKTLILQEI 341 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~-------------~-------~~~T~~~~~~~~~v~~~~~~~~~li~d~~ 341 (504)
.+..+|+|+|..|+|||||+++|+...-.. . +..|+.. ....+.+. ...+.+||++
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~--~~~~~~~~--~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIES--AATSCDWD--NHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCccc--ceEEEEEC--CEEEEEEECC
Confidence 346789999999999999999998532110 0 1112221 11223333 4677889999
Q ss_pred ChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC
Q 010673 342 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 409 (504)
Q Consensus 342 g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 409 (504)
|+..+.... ..+++.+|++++|+|+++..+...... +..+... ++|+++|+||+|+...
T Consensus 82 G~~df~~~~--~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~~~~------~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEV--ERSLRVLDGAVVVFDAVTGVQPQTETV-WRQADRY------GIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHH--HHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHhc------CCCEEEEEECCCCCCC
Confidence 987765544 557899999999999998877665433 3444433 7999999999998753
No 268
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.15 E-value=4e-10 Score=105.65 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=102.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC-C-CccceEEEEEEEcCCCcEEEEEEecCChhh-------Hhhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG-------VKKILS 351 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~-~-T~~~~~~~~~v~~~~~~~~~li~d~~g~~~-------~~~~~~ 351 (504)
....++|+++|.+|||||||+|+|..++..+... + ++.... .....++ + ....+||++|-+. ++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~-~-~~l~lwDtPG~gdg~~~D~~~r~~-- 110 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYD-G-ENLVLWDTPGLGDGKDKDAEHRQL-- 110 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhcc-c-cceEEecCCCcccchhhhHHHHHH--
Confidence 5677899999999999999999999766654431 1 221111 1112222 3 5677888887643 1222
Q ss_pred hhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc--------cchH---------
Q 010673 352 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT--------MAVQ--------- 414 (504)
Q Consensus 352 ~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~--------~~~~--------- 414 (504)
...++.+.|+++++.++.|+.---+ .+++..+... .-+.|++++.|.+|...+- ....
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~----~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIIL----GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHh----ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 2568899999999999998843222 3444555443 2358999999999986542 1111
Q ss_pred --HHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 415 --DSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 415 --~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
...++++. ..+++.+|... .|++++...+++.+
T Consensus 186 ~~~~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 186 AEALGRLFQE--VKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HHHHHHHHhh--cCCeEEeccccCccHHHHHHHHHHhC
Confidence 12222222 33567777788 99999999999986
No 269
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.13 E-value=2.7e-09 Score=99.10 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=97.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCC---CCccceEEEEEEEcCCCcEEEEEEecCChhhH--------hhhhhh-
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYA---PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--------KKILSN- 352 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~---~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~--------~~~~~~- 352 (504)
++|+++|.+|||||||+|.+++........ +.+.. .......+. | ..+.++|+||-... ..+.+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~-~~~~~~~~~-~-~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKT-CQKESAVWD-G-RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccc-cceeeEEEC-C-eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 379999999999999999999987654331 22222 222223344 3 56778999885321 111111
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc-------hHHHHHHHHHhCC
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------VQDSARVTQELGI 425 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-------~~~~~~~~~~~~~ 425 (504)
......+|++|+|+|+.+ .+-.+ ...++.+.+.... ..-.++++|.|++|....... ....+.+.+..+-
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~ 154 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGE-KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG 154 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhCh-HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC
Confidence 123467899999999887 33222 2334444332100 113688999999997654322 1245555556554
Q ss_pred CCeEEEe-----ccc-cCHHHHHHHHHHHHhC
Q 010673 426 EPPIPVS-----MKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 426 ~~~~~vS-----ak~-~gi~el~~~l~~~~~~ 451 (504)
. ++..+ +.. .++++|++.|.+.+..
T Consensus 155 r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 R-YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred e-EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3 44444 456 8899999999998864
No 270
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.11 E-value=1.6e-09 Score=112.41 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=98.5
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC----CC-CccceEEEE-------------EEEcCCC------------
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----AP-TTGEQYAVN-------------VVDQPGG------------ 331 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~-T~~~~~~~~-------------~v~~~~~------------ 331 (504)
...++|.++|.-..|||||+.+|++....... .+ |+...|... ....+.+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45578999999999999999999975432110 01 211111100 0011111
Q ss_pred ----cEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCC
Q 010673 332 ----NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 406 (504)
Q Consensus 332 ----~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 406 (504)
...+.++|++|++.+-.-. ...+..+|++++|+|++++ ...+. .+.+..+... .-.|+|+|.||+|+
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m--~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~l-----gi~~iIVvlNKiDl 183 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATM--LNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEIM-----KLKHIIILQNKIDL 183 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHH--HHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHHc-----CCCcEEEEEecccc
Confidence 1256689999997763222 4466789999999999874 22222 2223323222 23468999999999
Q ss_pred CCCccchH---HHHHHHHHh--CCCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 407 KPYTMAVQ---DSARVTQEL--GIEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 407 ~~~~~~~~---~~~~~~~~~--~~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.+.....+ ++.++.+.. ...+++++||++ .|+++|++.|.+.+.
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 86443322 333333322 122589999999 999999999987553
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.11 E-value=5.4e-10 Score=91.66 Aligned_cols=139 Identities=18% Similarity=0.128 Sum_probs=95.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhh--hhhhhcccccEEE
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL--SNKEALASCDVTI 363 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~--~~~~~~~~ad~ii 363 (504)
|++++|..|+|||||++.|.|... .+..|...++..+ -.+|++|.-.....+ .-.-...++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999998763 2333444322211 134555541111111 0123457899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
+|-.+++++|.-. .. +.. .-..|+|-|.+|+|+.++.+ .+..++|..+-|..++|++|+.+ .|+++++
T Consensus 70 ~v~~and~~s~f~-p~----f~~-----~~~k~vIgvVTK~DLaed~d-I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 70 YVHAANDPESRFP-PG----FLD-----IGVKKVIGVVTKADLAEDAD-ISLVKRWLREAGAEPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeecccCccccCC-cc----ccc-----ccccceEEEEecccccchHh-HHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence 9999999866211 00 111 22567999999999997443 44677788888888899999999 9999999
Q ss_pred HHHHHH
Q 010673 443 SRIIWA 448 (504)
Q Consensus 443 ~~l~~~ 448 (504)
+.|...
T Consensus 139 ~~L~~~ 144 (148)
T COG4917 139 DYLASL 144 (148)
T ss_pred HHHHhh
Confidence 998653
No 272
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.11 E-value=9.7e-10 Score=120.93 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=92.5
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCC-----CCCC-------------CccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-----NYAP-------------TTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~-----~~~~-------------T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
.+..+|+|+|.+|+|||||+++|+...-.. .... .+........+.+. ...+.+||++|.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCC
Confidence 445689999999999999999997432111 0000 01111222334444 367788999999
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 423 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 423 (504)
..+.... ...++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+.... .....+++...+
T Consensus 86 ~~~~~~~--~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~------~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 155 (689)
T TIGR00484 86 VDFTVEV--ERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANRY------EVPRIAFVNKMDKTGAN-FLRVVNQIKQRL 155 (689)
T ss_pred cchhHHH--HHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 7654432 567899999999999998765554 3444445433 78999999999998643 233556666666
Q ss_pred CCCC---eEEEeccc
Q 010673 424 GIEP---PIPVSMKS 435 (504)
Q Consensus 424 ~~~~---~~~vSak~ 435 (504)
+... .+++|+..
T Consensus 156 ~~~~~~~~ipis~~~ 170 (689)
T TIGR00484 156 GANAVPIQLPIGAED 170 (689)
T ss_pred CCCceeEEeccccCC
Confidence 6543 35566554
No 273
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.10 E-value=1.9e-09 Score=112.10 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=96.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCC--------------------------CCCC---CccceEEEEEEEcCCC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE--------------------------NYAP---TTGEQYAVNVVDQPGG 331 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~--------------------------~~~~---T~~~~~~~~~v~~~~~ 331 (504)
.+..++|+++|..++|||||+-+|+...-.. ...+ ..+.++......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3566899999999999999999987421100 0000 1111222222333334
Q ss_pred cEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHH-------HHHHHHHHHHHhccCCCCCC-cEEEEEEC
Q 010673 332 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWK-------RTKELLVEVARLGEDSGYGV-PCLLIASK 403 (504)
Q Consensus 332 ~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~-------~~~~~~~~l~~~~~~~~~~~-piilV~NK 403 (504)
...+.++|++|++.+.... ...+..+|++|+|+|+++. .|+ ...+.+..+... ++ ++|+++||
T Consensus 84 ~~~i~liDtPGh~df~~~~--~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~------gi~~iIV~vNK 154 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNM--ITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL------GVKQMICCCNK 154 (447)
T ss_pred CEEEEEEECCCHHHHHHHH--HhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc------CCCcEEEEEEc
Confidence 4677889999998875443 4577899999999999873 221 333333333322 66 47889999
Q ss_pred CCCCCCcc-------chHHHHHHHHHhCCC----CeEEEeccc-cCHHH
Q 010673 404 DDLKPYTM-------AVQDSARVTQELGIE----PPIPVSMKS-KDLNN 440 (504)
Q Consensus 404 ~Dl~~~~~-------~~~~~~~~~~~~~~~----~~~~vSak~-~gi~e 440 (504)
+|+..... ..++++.++++.++. +++++||++ +|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99863211 133677778877742 489999999 99853
No 274
>PTZ00258 GTP-binding protein; Provisional
Probab=99.08 E-value=3.8e-09 Score=106.66 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=57.0
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC-CCCCccceEEEEEEEcCCCc---------------EEEEEEecCChh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEE 344 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~-~~~T~~~~~~~~~v~~~~~~---------------~~~li~d~~g~~ 344 (504)
..+.++|+|+|.||||||||+|+|++...... ++.||.. .....+.+++.. ..+.++|++|-.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~-p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTID-PNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCccc-ceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 46678999999999999999999998776443 3334432 222234443211 235678888842
Q ss_pred hH----hhh-hhhhhhcccccEEEEEEeCC
Q 010673 345 GV----KKI-LSNKEALASCDVTIFVYDSS 369 (504)
Q Consensus 345 ~~----~~~-~~~~~~~~~ad~iilV~D~s 369 (504)
.- .++ ......++++|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 111 12245778999999999984
No 275
>PRK12739 elongation factor G; Reviewed
Probab=99.06 E-value=3.3e-09 Score=116.69 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=78.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCC-----CCC-------------CCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFS-----ENY-------------APTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~-----~~~-------------~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
.+..+|+|+|.+++|||||+++|+...-. ... ...+........+.++ ...+.++|++|+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 45678999999999999999999742110 000 0111111222334444 367788999998
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
..+... ....+..+|++++|+|+++...-+. ..++..+... ++|+++++||+|+..
T Consensus 84 ~~f~~e--~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~------~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIE--VERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY------GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHH--HHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc------CCCEEEEEECCCCCC
Confidence 665433 3567889999999999988754443 3444555433 789999999999875
No 276
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.06 E-value=1.4e-09 Score=115.13 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=83.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC--------------------CCccceEEEEEEEcCCCcEEEEEEecC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA--------------------PTTGEQYAVNVVDQPGGNKKTLILQEI 341 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~--------------------~T~~~~~~~~~v~~~~~~~~~li~d~~ 341 (504)
.+..+|+|+|.+++|||||+++|+...-..... ...+.++....+.+..+...+.+||++
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345689999999999999999986321111000 011222333333333344677889999
Q ss_pred ChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHH
Q 010673 342 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ 421 (504)
Q Consensus 342 g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 421 (504)
|+..+.... ...+..+|++|+|+|+++... .....++..... .++|+++++||+|+.... ..+..+++..
T Consensus 89 G~~df~~~~--~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~------~~~PiivviNKiD~~~~~-~~~ll~~i~~ 158 (527)
T TIGR00503 89 GHEDFSEDT--YRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL------RDTPIFTFMNKLDRDIRD-PLELLDEVEN 158 (527)
T ss_pred ChhhHHHHH--HHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh------cCCCEEEEEECccccCCC-HHHHHHHHHH
Confidence 996664432 457789999999999987522 223445544432 378999999999986532 1223444455
Q ss_pred HhCCC
Q 010673 422 ELGIE 426 (504)
Q Consensus 422 ~~~~~ 426 (504)
.++..
T Consensus 159 ~l~~~ 163 (527)
T TIGR00503 159 ELKIN 163 (527)
T ss_pred HhCCC
Confidence 55543
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.03 E-value=3e-09 Score=110.72 Aligned_cols=152 Identities=17% Similarity=0.177 Sum_probs=93.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCC--CC------------------------CCCC---CccceEEEEEEEcCCC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPF--SE------------------------NYAP---TTGEQYAVNVVDQPGG 331 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~--~~------------------------~~~~---T~~~~~~~~~v~~~~~ 331 (504)
....++|+++|..++|||||+.+|+...- .. ...+ ..+.+.......+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35568999999999999999999985211 00 0000 0111112222223323
Q ss_pred cEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCccc---H---HHHHHHHHHHHHhccCCCCCCc-EEEEEECC
Q 010673 332 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS---W---KRTKELLVEVARLGEDSGYGVP-CLLIASKD 404 (504)
Q Consensus 332 ~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~ 404 (504)
...+.++|++|+..+..-. ...+..+|++++|+|++...- | ....+.+..+... ++| +|++.||+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~--~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~------gi~~iiv~vNKm 155 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNM--ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL------GVKQMIVCINKM 155 (446)
T ss_pred CeEEEEEECCChHHHHHHH--HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc------CCCeEEEEEEcc
Confidence 4677889999987763332 446789999999999987531 1 1223333344433 666 67999999
Q ss_pred CCCCC----cc---chHHHHHHHHHhCCC----CeEEEeccc-cCHHH
Q 010673 405 DLKPY----TM---AVQDSARVTQELGIE----PPIPVSMKS-KDLNN 440 (504)
Q Consensus 405 Dl~~~----~~---~~~~~~~~~~~~~~~----~~~~vSak~-~gi~e 440 (504)
|.... .. ...++.++....++. +++++|+.+ .|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 95421 11 122555566666552 489999999 99864
No 278
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.03 E-value=8.3e-10 Score=99.47 Aligned_cols=134 Identities=14% Similarity=0.125 Sum_probs=111.7
Q ss_pred HHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCch
Q 010673 56 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE 135 (504)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e 135 (504)
..++...|...|+|+.|.|+.+||...+.-+-..+.+.+-...|+...+.+ .++.|.|+||..|++..-
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~-----~~G~i~f~EF~~Lw~~i~------ 124 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRD-----NSGTIGFKEFKALWKYIN------ 124 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCC-----CCCccCHHHHHHHHHHHH------
Confidence 447899999999999999999999888776667889999999999999988 577899999999997633
Q ss_pred hHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhhccCCC
Q 010673 136 TTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE 208 (504)
Q Consensus 136 ~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~~~~p~ 208 (504)
.-+.+|+.||.|++|.|+..|| . ++ +.++-... ++..-|+++||..+.|.|.+++|.+..-..++
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~-Al-------~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQ-AL-------TQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHH-HH-------HHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 4667999999999999999999 5 33 34444443 77778899999888999999999877665443
No 279
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.02 E-value=7.4e-09 Score=98.16 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=83.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccccc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD 360 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad 360 (504)
...+..|+|+|.+|+|||||++.+.+..-........+. +. +... +...+.++|++|.. ..+ ...++.+|
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~---i~~~-~~~~i~~vDtPg~~--~~~---l~~ak~aD 105 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT---VVTG-KKRRLTFIECPNDI--NAM---IDIAKVAD 105 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE---EEec-CCceEEEEeCCchH--HHH---HHHHHhcC
Confidence 456678999999999999999999875321111111111 11 2222 34566788888752 222 34568899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcE-EEEEECCCCCCCccchH----HHHH-HHH-HhCCCCeEEEec
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC-LLIASKDDLKPYTMAVQ----DSAR-VTQ-ELGIEPPIPVSM 433 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pi-ilV~NK~Dl~~~~~~~~----~~~~-~~~-~~~~~~~~~vSa 433 (504)
++++|+|++....... ..++..+... +.|. ++|.||+|+........ .++. +.. .....+++.+||
T Consensus 106 vVllviDa~~~~~~~~-~~i~~~l~~~------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 106 LVLLLIDASFGFEMET-FEFLNILQVH------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred EEEEEEecCcCCCHHH-HHHHHHHHHc------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 9999999987654333 3444444433 5775 45999999975332211 2222 221 233346899999
Q ss_pred cc
Q 010673 434 KS 435 (504)
Q Consensus 434 k~ 435 (504)
++
T Consensus 179 ~~ 180 (225)
T cd01882 179 IV 180 (225)
T ss_pred cc
Confidence 88
No 280
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.02 E-value=5.7e-09 Score=98.35 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=98.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC---CCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhh---hhhhhhcccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY---APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI---LSNKEALASC 359 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~---~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~---~~~~~~~~~a 359 (504)
||+++|+.++||||+.+-+.++..+... .+|+.. ....+... +...+.+||.+|+..+... ......++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~v--e~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDV--EKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SE--EEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCc--eEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999999999887654332 345554 33345555 5577889999998644222 1224567999
Q ss_pred cEEEEEEeCCCcccHHH---HHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-------HHHHHHHHHhCCC--C
Q 010673 360 DVTIFVYDSSDEYSWKR---TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-------QDSARVTQELGIE--P 427 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~---~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------~~~~~~~~~~~~~--~ 427 (504)
+++|+|+|+.+.+-.+. +...+..+.+. .+++.+.+..+|+|+..+.... +.+.+.+...+.. .
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~----sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQY----SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHH----STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHh----CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceE
Confidence 99999999985544443 34455555555 6799999999999997644332 1344444555522 2
Q ss_pred eEEEeccccCHHHHHHHHHHHHh
Q 010673 428 PIPVSMKSKDLNNVFSRIIWAAE 450 (504)
Q Consensus 428 ~~~vSak~~gi~el~~~l~~~~~ 450 (504)
++.+|..++.+-+.+..|++.+.
T Consensus 154 ~~~TSI~D~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 154 FFLTSIWDESLYEAWSKIVQKLI 176 (232)
T ss_dssp EEEE-TTSTHHHHHHHHHHHTTS
T ss_pred EEeccCcCcHHHHHHHHHHHHHc
Confidence 67777666777777777777654
No 281
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=7e-09 Score=105.18 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=109.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC-------------CCCccceEEE--EEEEcCCC-cEEEEEEecCChhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------APTTGEQYAV--NVVDQPGG-NKKTLILQEIPEEG 345 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~-------------~~T~~~~~~~--~~v~~~~~-~~~~li~d~~g~~~ 345 (504)
.+.-++.||-.-.-|||||..+|+...-.... .--.+.++.. ..+.+.+| ...+.++||+|+..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 44557999999999999999999843221100 0001111111 11222223 34556799999987
Q ss_pred HhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC
Q 010673 346 VKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI 425 (504)
Q Consensus 346 ~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 425 (504)
+..-. .+.+.-||++|+|+|++..---+.+..++..+.. +..+|.|.||+|++..+. .+...++.+-+++
T Consensus 138 Fs~EV--sRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-------~L~iIpVlNKIDlp~adp-e~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 138 FSGEV--SRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-------GLAIIPVLNKIDLPSADP-ERVENQLFELFDI 207 (650)
T ss_pred cccee--hehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-------CCeEEEeeeccCCCCCCH-HHHHHHHHHHhcC
Confidence 75443 3467789999999999988666666666666653 789999999999987543 2233333344444
Q ss_pred C--CeEEEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 426 E--PPIPVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 426 ~--~~~~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
+ +++.+|||+ .|+++++++|++.+-.|.
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 4 589999999 999999999999875544
No 282
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.98 E-value=1.8e-09 Score=85.87 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=63.2
Q ss_pred HHHHHHHHHhHhhhcC-CCCCccCHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHH
Q 010673 53 PRCVRALKRIFIICDH-DMDGALNDAELNEFQVKCFNAPLQP-AEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 127 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~-d~dG~l~~~El~~~~~~~~g~~~~~-~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~ 127 (504)
+.++..|+++|+.||+ |++|+|+.+||...+..-+|..++. +++++|++.+|.+ ++|.|+|++|+.++..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-----~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-----QDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-----CCCCCcHHHHHHHHHH
Confidence 6788999999999999 9999999999999988757988998 9999999999887 5777999999987754
No 283
>PRK00007 elongation factor G; Reviewed
Probab=98.97 E-value=6.9e-09 Score=114.13 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=91.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCC--C-CC--C--------------CCCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERP--F-SE--N--------------YAPTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~--~-~~--~--------------~~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
.+..+|+|+|.+|+|||||+++|+... . .. . ..+++.. .....+.+. ...+.++|++|
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~-~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITIT-SAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEe-ccEEEEEEC--CeEEEEEeCCC
Confidence 456789999999999999999997311 1 00 0 1111111 122234444 36788899999
Q ss_pred hhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH
Q 010673 343 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE 422 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 422 (504)
+..+.. .....+..+|++++|+|+...-..+. ...+..+.+. ++|+++++||+|+.... .....+++.+.
T Consensus 85 ~~~f~~--ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~------~~p~iv~vNK~D~~~~~-~~~~~~~i~~~ 154 (693)
T PRK00007 85 HVDFTI--EVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY------KVPRIAFVNKMDRTGAD-FYRVVEQIKDR 154 (693)
T ss_pred cHHHHH--HHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc------CCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 865533 23557789999999999987655444 3444555544 78999999999998644 33355666666
Q ss_pred hCCC---CeEEEeccc
Q 010673 423 LGIE---PPIPVSMKS 435 (504)
Q Consensus 423 ~~~~---~~~~vSak~ 435 (504)
++.. ..+++|+..
T Consensus 155 l~~~~~~~~ipisa~~ 170 (693)
T PRK00007 155 LGANPVPIQLPIGAED 170 (693)
T ss_pred hCCCeeeEEecCccCC
Confidence 6653 235555544
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.94 E-value=3.3e-09 Score=101.76 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=73.0
Q ss_pred hHhhhhhhhhhcccccEEEEEEeCCCcc-cHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHHHH
Q 010673 345 GVKKILSNKEALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVTQE 422 (504)
Q Consensus 345 ~~~~~~~~~~~~~~ad~iilV~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~ 422 (504)
++..+. ..+++++|++++|||++++. ++..+..|+..+.. .++|+++|+||+||....+... ..+.+ .+
T Consensus 25 R~~~L~--r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~ 95 (245)
T TIGR00157 25 RKNELT--RPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RN 95 (245)
T ss_pred ccceEE--CcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHHHHHHHHH-HH
Confidence 344444 34789999999999999887 89999999987653 3899999999999976554433 34444 35
Q ss_pred hCCCCeEEEeccc-cCHHHHHHHHHH
Q 010673 423 LGIEPPIPVSMKS-KDLNNVFSRIIW 447 (504)
Q Consensus 423 ~~~~~~~~vSak~-~gi~el~~~l~~ 447 (504)
++.+ ++++||++ .|++++|+.+..
T Consensus 96 ~g~~-v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQ-VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCe-EEEEecCCchhHHHHHhhhcC
Confidence 7775 89999999 999999998764
No 285
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.94 E-value=4.1e-09 Score=83.88 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=62.0
Q ss_pred HHHHHHHHHhHhhhc-CCCCC-ccCHHHHHHHHHH----HcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICD-HDMDG-ALNDAELNEFQVK----CFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D-~d~dG-~l~~~El~~~~~~----~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+..+..|+++|+.|| +|||| +|+.+||..+++. .+|..+++++++.+++.++.+ ++|.|+|++|+.++.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-----~dG~v~f~eF~~li~ 78 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-----GDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-----CCCcCcHHHHHHHHH
Confidence 567889999999998 89999 5999999999986 368899999999999999877 577799999998875
Q ss_pred H
Q 010673 127 L 127 (504)
Q Consensus 127 ~ 127 (504)
.
T Consensus 79 ~ 79 (88)
T cd05027 79 M 79 (88)
T ss_pred H
Confidence 4
No 286
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.93 E-value=3.2e-08 Score=94.24 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=109.9
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC--CCcEEEEEEecCChhhHhhhhh-hhhhc
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILS-NKEAL 356 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~--~~~~~~li~d~~g~~~~~~~~~-~~~~~ 356 (504)
.....-+|+|+|+.++||||||.+|-+.+ .+.+..+-.|..-.+.-+ +...+..+|.--|.-...++.. +...-
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 35567789999999999999999998866 333333433433222211 1223344454444422233331 11111
Q ss_pred ccc-cEEEEEEeCCCccc-HHHHHHHHHHHHHhccC--------------------------------------------
Q 010673 357 ASC-DVTIFVYDSSDEYS-WKRTKELLVEVARLGED-------------------------------------------- 390 (504)
Q Consensus 357 ~~a-d~iilV~D~s~~~s-~~~~~~~~~~l~~~~~~-------------------------------------------- 390 (504)
.-+ -++|++.|+++|.. ++.+.+|..-+.++.+.
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 112 37788999999944 56667776655432100
Q ss_pred --------------CCCCCcEEEEEECCCCCC----Cccc--------hHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 391 --------------SGYGVPCLLIASKDDLKP----YTMA--------VQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 391 --------------~~~~~piilV~NK~Dl~~----~~~~--------~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
..-++|+++|++|+|... ..+- ...++.||-++|.. .+.+|+|. .||+-|..
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyK 283 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYK 283 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHH
Confidence 001578999999999832 1111 23788999999997 89999999 99999999
Q ss_pred HHHHHHhCCCCCCC
Q 010673 444 RIIWAAEHPHLNIP 457 (504)
Q Consensus 444 ~l~~~~~~~~~~~~ 457 (504)
+|......-+...|
T Consensus 284 Yivhr~yG~~fttp 297 (473)
T KOG3905|consen 284 YIVHRSYGFPFTTP 297 (473)
T ss_pred HHHHHhcCcccCCc
Confidence 99998766544433
No 287
>PRK12740 elongation factor G; Reviewed
Probab=98.92 E-value=1.9e-08 Score=110.69 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=71.4
Q ss_pred EcCCCchhhHHHHHHhcCCCCCCC-----C-------------CCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhh
Q 010673 290 FGPQNAGKSALLNSFLERPFSENY-----A-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS 351 (504)
Q Consensus 290 vG~~~vGKSSLin~l~~~~~~~~~-----~-------------~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~ 351 (504)
+|++|+|||||+++|+...-.... . ..+........+.+. ...+.+||++|+..+....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~- 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEV- 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHH-
Confidence 699999999999999643221110 0 011111222334444 3677889999986654433
Q ss_pred hhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC
Q 010673 352 NKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 352 ~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
...+..+|++++|+|+++....... .++..+... ++|+++|+||+|+..
T Consensus 78 -~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~~------~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 78 -ERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEKY------GVPRIIFVNKMDRAG 126 (668)
T ss_pred -HHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHHc------CCCEEEEEECCCCCC
Confidence 4577899999999999987766553 333444433 789999999999875
No 288
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.4e-08 Score=91.50 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=75.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcc---cccE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA---SCDV 361 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~---~ad~ 361 (504)
-.|+++|..++|||+|+-+|..+....+.. ...+ ....+.++ ....-++|-||+.+.+.-. .++++ .+-+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Siep--n~a~~r~g--s~~~~LVD~PGH~rlR~kl--~e~~~~~~~aka 111 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-SIEP--NEATYRLG--SENVTLVDLPGHSRLRRKL--LEYLKHNYSAKA 111 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-eecc--ceeeEeec--CcceEEEeCCCcHHHHHHH--HHHcccccccee
Confidence 469999999999999999999885543331 1111 11122333 2335678899997775443 33444 7999
Q ss_pred EEEEEeCCC-cccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 362 TIFVYDSSD-EYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 362 iilV~D~s~-~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
|+||+|..- .....++.+++..+..........+|+++++||.|+...+
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 999999753 2233444555544443322124578999999999986543
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.91 E-value=4e-08 Score=98.19 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=54.0
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCC-CCCCccceEEEEEEEcCCCc---------------EEEEEEecCChhh---
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEG--- 345 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~-~~~T~~~~~~~~~v~~~~~~---------------~~~li~d~~g~~~--- 345 (504)
++|+++|.||||||||+|+|++...... ++.||.. .....+.+++.. ..+.++|.+|-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~-p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIE-PNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccccccccc-ceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 6899999999999999999999884332 3334422 222234444211 1356778887421
Q ss_pred -Hhhh-hhhhhhcccccEEEEEEeCC
Q 010673 346 -VKKI-LSNKEALASCDVTIFVYDSS 369 (504)
Q Consensus 346 -~~~~-~~~~~~~~~ad~iilV~D~s 369 (504)
..++ ......++.||++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1111 12245678999999999985
No 290
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.89 E-value=1.6e-08 Score=94.63 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=39.2
Q ss_pred CCcEEEEEECCCCCCCccc-hHHHHHHHHHhC-CCCeEEEeccc-cCHHHHHHHHHHH
Q 010673 394 GVPCLLIASKDDLKPYTMA-VQDSARVTQELG-IEPPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 394 ~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~~vSak~-~gi~el~~~l~~~ 448 (504)
..|.++|+||+|+...... .....+..++++ ..+++++||++ .|++++++++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999754321 223333333433 23589999999 9999999999875
No 291
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=2.1e-08 Score=100.22 Aligned_cols=162 Identities=16% Similarity=0.225 Sum_probs=112.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC-------C------CCCccceEEEE----EEEcCCCc-EEEEEEecCCh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------Y------APTTGEQYAVN----VVDQPGGN-KKTLILQEIPE 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~-------~------~~T~~~~~~~~----~v~~~~~~-~~~li~d~~g~ 343 (504)
.+.-+..|+-.-.-|||||..|++...-... . ....+.++... .+...+|+ ..+.++||+|+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3445688999999999999999985432110 0 00111222222 22223333 44557999999
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 423 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 423 (504)
-.+..-. .+.+..|.+.++|+|++..-.-+.+.+.+..+.. +.-+|-|.||+||+... .....+++..-.
T Consensus 87 VDFsYEV--SRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-------~LeIiPViNKIDLP~Ad-pervk~eIe~~i 156 (603)
T COG0481 87 VDFSYEV--SRSLAACEGALLVVDASQGVEAQTLANVYLALEN-------NLEIIPVLNKIDLPAAD-PERVKQEIEDII 156 (603)
T ss_pred cceEEEe--hhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-------CcEEEEeeecccCCCCC-HHHHHHHHHHHh
Confidence 7663222 3466789999999999998766777777776653 78899999999998744 234566677778
Q ss_pred CCC--CeEEEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 424 GIE--PPIPVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 424 ~~~--~~~~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
|++ ..+.+|||+ .||+++++.|++.+-.|.
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 877 569999999 999999999999875544
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.87 E-value=2.9e-08 Score=98.49 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=65.2
Q ss_pred EEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc
Q 010673 333 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 412 (504)
Q Consensus 333 ~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 412 (504)
..+++++++|..... ......||.+++|.+....+..+.+ ...+. ...-++|+||+|+......
T Consensus 149 ~d~viieT~Gv~qs~-----~~i~~~aD~vlvv~~p~~gd~iq~~---k~gi~--------E~aDIiVVNKaDl~~~~~a 212 (332)
T PRK09435 149 YDVILVETVGVGQSE-----TAVAGMVDFFLLLQLPGAGDELQGI---KKGIM--------ELADLIVINKADGDNKTAA 212 (332)
T ss_pred CCEEEEECCCCccch-----hHHHHhCCEEEEEecCCchHHHHHH---Hhhhh--------hhhheEEeehhcccchhHH
Confidence 456678888874222 1245679999999764444333322 22122 2334899999998865433
Q ss_pred hHHHHHHHHHhCC---------CCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 413 VQDSARVTQELGI---------EPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 413 ~~~~~~~~~~~~~---------~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.....++...+.+ ++++.+||++ .||++|++.|.+...
T Consensus 213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333334433332 4689999999 999999999999865
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.87 E-value=6.2e-08 Score=96.52 Aligned_cols=158 Identities=13% Similarity=0.227 Sum_probs=97.4
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcC----CCC-------------CCCCC----CccceE---EEEEEEcC-CCcEE
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLER----PFS-------------ENYAP----TTGEQY---AVNVVDQP-GGNKK 334 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~----~~~-------------~~~~~----T~~~~~---~~~~v~~~-~~~~~ 334 (504)
+..+.+.|.|+|+.++|||||+|+|.+. +.. ....+ |+.+.+ ....+... +-...
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 3566789999999999999999999998 443 11122 333333 11112222 22244
Q ss_pred EEEEecCChhhHh-----hhhh----------------------hhhhcc-cccEEEEEE-eCC----CcccHH-HHHHH
Q 010673 335 TLILQEIPEEGVK-----KILS----------------------NKEALA-SCDVTIFVY-DSS----DEYSWK-RTKEL 380 (504)
Q Consensus 335 ~li~d~~g~~~~~-----~~~~----------------------~~~~~~-~ad~iilV~-D~s----~~~s~~-~~~~~ 380 (504)
+.++|++|-.... .... +...+. .+|+.|+|. |.+ .++.+. .-..+
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 5567776642110 0011 345566 899999998 775 112222 22678
Q ss_pred HHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc---cCHHHHHHHH
Q 010673 381 LVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS---KDLNNVFSRI 445 (504)
Q Consensus 381 ~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~---~gi~el~~~l 445 (504)
+.++++. ++|+++|.||+|-.... .....+++..+++.+ ++.+||.. ..|..+++.+
T Consensus 173 i~eLk~~------~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 173 IEELKEL------NKPFIILLNSTHPYHPE-TEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHHHhc------CCCEEEEEECcCCCCch-hHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHH
Confidence 8888865 89999999999943322 223456777888976 89999987 3444444444
No 294
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.87 E-value=4.4e-08 Score=109.84 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=91.0
Q ss_pred chhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCc----------------EEEEEEecCChhhHhhhhhhhhhccc
Q 010673 295 AGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN----------------KKTLILQEIPEEGVKKILSNKEALAS 358 (504)
Q Consensus 295 vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~----------------~~~li~d~~g~~~~~~~~~~~~~~~~ 358 (504)
++||||+.++.+.+......+.++-.+....+.++.+. ..+.+||++|++.+..+. ...+..
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr--~~g~~~ 549 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR--KRGGSL 549 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH--Hhhccc
Confidence 45999999999998866554432222222223332111 126789999998886665 346678
Q ss_pred ccEEEEEEeCCCc---ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--------------hHHHHHH--
Q 010673 359 CDVTIFVYDSSDE---YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--------------VQDSARV-- 419 (504)
Q Consensus 359 ad~iilV~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--------------~~~~~~~-- 419 (504)
+|++++|+|+++. .+++. +..+... ++|+++|+||+|+...... .....++
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~----I~~lk~~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEA----INILRQY------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHH----HHHHHHc------CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 9999999999873 34333 2333332 6899999999999642110 0011111
Q ss_pred --------HHHhC--------------CCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 420 --------TQELG--------------IEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 420 --------~~~~~--------------~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
...+| ..++++|||++ .||++|++.|....
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 12222 22579999999 99999999886544
No 295
>PLN02964 phosphatidylserine decarboxylase
Probab=98.85 E-value=5.6e-09 Score=111.02 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcC-CCCCHHH---HHHHHHHhhhhccCCcCCCCCCHHhHHHHH
Q 010673 50 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFN-APLQPAE---IVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 125 (504)
Q Consensus 50 ~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g-~~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~ 125 (504)
.++..++++++++|.+||.|+||.+ |+.+++ .+| ..+++++ ++.+++.+|.+ ++|.|++++|+.++
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilr-slG~~~pte~e~~fi~~mf~~~D~D-----gdG~IdfdEFl~lL 205 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFV-SCSIEDPVETERSFARRILAIVDYD-----EDGQLSFSEFSDLI 205 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHH-HhCCCCCCHHHHHHHHHHHHHhCCC-----CCCeEcHHHHHHHH
Confidence 4567888999999999999999997 777766 568 6999998 78899988766 46679999999888
Q ss_pred HHHHhcCCchhHHHHHHhhcCCCCccccCCCC-C
Q 010673 126 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-P 158 (504)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~ 158 (504)
..+-.....+++..+|+.||.|++|.|+.++| .
T Consensus 206 ~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 206 KAFGNLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 76433345578999999999999999999988 5
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.85 E-value=2e-08 Score=85.40 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=76.7
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCC-CCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~-~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+||+++|..|||||+|+.++....+...+. +|.+ +..+. ..+.+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~--~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYD--PTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhcc--ccccCCCCEEE
Confidence 489999999999999999997776643332 2222 11111 23567899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHH
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLN 439 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~ 439 (504)
+||+.++..+++.+ |...+.... ..++|.++++||.|+...... +.+.+.. ++++|+++ .|+.
T Consensus 52 ~v~~~~~~~s~~~~--~~~~i~~~~---k~dl~~~~~~nk~dl~~~~~~-------~~~~~~~-~~~~s~~~~~~~~ 115 (124)
T smart00010 52 QCWRVDDRDSADNK--NVPEVLVGN---KSDLPILVGGNRDVLEEERQV-------ATEEGLE-FAETSAKTPEEGE 115 (124)
T ss_pred EEEEccCHHHHHHH--hHHHHHhcC---CCCCcEEEEeechhhHhhCcC-------CHHHHHH-HHHHhCCCcchhh
Confidence 99999999998765 766665432 346889999999998543322 1222222 56778888 8774
No 297
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.84 E-value=1.7e-08 Score=81.47 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=60.0
Q ss_pred HHHHHHHHHhHhhhc-CCCCC-ccCHHHHHHHHHHHcC----CCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICD-HDMDG-ALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D-~d~dG-~l~~~El~~~~~~~~g----~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+.++..++++|..|| +|+|| +||.+||..++...++ ...++++++.|++.+|.+ ++|.|+|++|+.++.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-----~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-----KDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-----CCCCCCHHHHHHHHH
Confidence 678899999999999 89999 5999999999877543 445888999999999887 577799999998875
Q ss_pred H
Q 010673 127 L 127 (504)
Q Consensus 127 ~ 127 (504)
.
T Consensus 81 ~ 81 (93)
T cd05026 81 A 81 (93)
T ss_pred H
Confidence 4
No 298
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.82 E-value=1.1e-08 Score=100.18 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=112.4
Q ss_pred CcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHH
Q 010673 49 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAP-LQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 127 (504)
Q Consensus 49 ~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~-~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~ 127 (504)
..++++-...++..|+.||.++||.++..+|...+.+ ++.+ +..+-...+++..+.+ .++.+++++|-.-+.
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~-l~~~~~~~~~~~~l~~~~d~~-----~dg~vDy~eF~~Y~~- 78 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEK-LDHPKPNYEAAKMLFSAMDAN-----RDGRVDYSEFKRYLD- 78 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHh-cCCCCCchHHHHHHHHhcccC-----cCCcccHHHHHHHHH-
Confidence 3456677788999999999999999999999877664 4555 7777778888888776 467799999974332
Q ss_pred HHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 128 FIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 128 ~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
.+..++|.+|++.|.|.||.|+.+|+ + .+ ..++.... +.+..+|+..|+||.+.|.++|+.+-+..
T Consensus 79 ----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~-~l-------~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 79 ----NKELELYRIFQSIDLEHDGKIDPNEIWR-YL-------KDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred ----HhHHHHHHHHhhhccccCCccCHHHHHH-HH-------HHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 22347999999999999999999999 7 33 23333332 77788999999999999999999998888
Q ss_pred CCC
Q 010673 206 APE 208 (504)
Q Consensus 206 ~p~ 208 (504)
.|.
T Consensus 147 ~p~ 149 (463)
T KOG0036|consen 147 YPE 149 (463)
T ss_pred CCh
Confidence 873
No 299
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.82 E-value=2e-08 Score=81.78 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 49 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 49 ~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
..|+++++..++++|..||+|+||.|+.+||..+++. .| ++++++..|+..++.+ ++|.|+|++|+.++.
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~~--~~~~ev~~i~~~~d~~-----~~g~I~~~eF~~~~~ 71 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLK-SG--LPQTLLAKIWNLADID-----NDGELDKDEFALAMH 71 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-cC--CCHHHHHHHHHHhcCC-----CCCCcCHHHHHHHHH
Confidence 4688999999999999999999999999999999876 34 7899999999999766 466799999997765
No 300
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.82 E-value=1.4e-07 Score=88.14 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=57.1
Q ss_pred cccEEEEEEeCC---CcccHHH-HHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH---HHHHHHHHhC------
Q 010673 358 SCDVTIFVYDSS---DEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ---DSARVTQELG------ 424 (504)
Q Consensus 358 ~ad~iilV~D~s---~~~s~~~-~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---~~~~~~~~~~------ 424 (504)
..-++++|+|.. +|.+|.. +..-...+.+ .+.|.|+|.||+|+.+..-..+ +.+.|...++
T Consensus 147 ~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk------tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y 220 (366)
T KOG1532|consen 147 FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK------TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSY 220 (366)
T ss_pred CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh------ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccch
Confidence 456889999964 4455543 2222333333 3899999999999987654322 2222222221
Q ss_pred -----------------CCCeEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 425 -----------------IEPPIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 425 -----------------~~~~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
-...+.||+.+ .|.+++|..+-+.+..
T Consensus 221 ~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 221 MSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred hHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 11368999999 9999999999887744
No 301
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.80 E-value=1.2e-07 Score=90.85 Aligned_cols=128 Identities=17% Similarity=0.096 Sum_probs=75.6
Q ss_pred hcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCChhhHh--h-----
Q 010673 278 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK--K----- 348 (504)
Q Consensus 278 ~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~--~----- 348 (504)
++.....++|+|+|.+|||||||+|+|++....... .+++.. ......... | ..+.+||++|-.... .
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~-~~~~~~~~~-g-~~i~vIDTPGl~~~~~~~~~~~~ 101 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLR-VREVSGTVD-G-FKLNIIDTPGLLESVMDQRVNRK 101 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEE-EEEEEEEEC-C-eEEEEEECCCcCcchhhHHHHHH
Confidence 345678899999999999999999999998764432 233322 222223333 3 567889998864321 1
Q ss_pred hhh-hhhhcc--cccEEEEEEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 349 ILS-NKEALA--SCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 349 ~~~-~~~~~~--~ad~iilV~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
... ...++. ..|++++|..++.. .+..+ ...++.+...... .--.++++|.||+|...+.
T Consensus 102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~-~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP-SIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh-hhHhCEEEEEeCCccCCCC
Confidence 110 112332 57889888766543 23332 2344444332100 1125799999999986543
No 302
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.79 E-value=2.6e-08 Score=109.95 Aligned_cols=118 Identities=15% Similarity=0.116 Sum_probs=77.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCC---------------CCCC---CCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERP---------------FSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~---------------~~~~---~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
....+|+|+|+.++|||||+++|+... +... ...|+........+...++...+.+||++|+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 346789999999999999999997531 1110 1113322222222334445577888999999
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
..+.... ...++.+|++++|+|+.+.-..+. ...+..+... ++|+++|+||+|...
T Consensus 97 ~~f~~~~--~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~~------~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDV--TRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALKE------NVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHH--HHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHHc------CCCEEEEEEChhccc
Confidence 7764333 457899999999999987533333 2333333322 678899999999864
No 303
>PRK13768 GTPase; Provisional
Probab=98.78 E-value=8e-08 Score=92.69 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=69.5
Q ss_pred EEEEEecCChhhHhh---hhh-hhhhccc--ccEEEEEEeCCCcccHHHH--HHHHHHHHHhccCCCCCCcEEEEEECCC
Q 010673 334 KTLILQEIPEEGVKK---ILS-NKEALAS--CDVTIFVYDSSDEYSWKRT--KELLVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 334 ~~li~d~~g~~~~~~---~~~-~~~~~~~--ad~iilV~D~s~~~s~~~~--~~~~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
.+++||++|...... ... ..+.+.. ++++++|+|++...+..+. ..|+...... ..++|+++|+||+|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~----~~~~~~i~v~nK~D 173 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL----RLGLPQIPVLNKAD 173 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH----HcCCCEEEEEEhHh
Confidence 467899998744321 110 1122333 8999999999765443322 2233322222 23799999999999
Q ss_pred CCCCccchHH---HH------------------------HHHHHhCC-CCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 406 LKPYTMAVQD---SA------------------------RVTQELGI-EPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 406 l~~~~~~~~~---~~------------------------~~~~~~~~-~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
+....+.... .. +..++.+. .+++++|+++ .|++++.++|.+.+.
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9875443221 11 11223342 2479999999 999999999988764
No 304
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.77 E-value=5.8e-08 Score=93.99 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=51.7
Q ss_pred EEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCc---------------EEEEEEecCChhh----H
Q 010673 287 CLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEG----V 346 (504)
Q Consensus 287 I~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~---------------~~~li~d~~g~~~----~ 346 (504)
|+++|.||||||||+|+|++.+..... +.||.+ .....+.+++.. ..+.++|.+|-.. .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~-p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIE-PNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchh-ceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 579999999999999999998874433 333322 233334444211 1356778887421 1
Q ss_pred hhhh-hhhhhcccccEEEEEEeCC
Q 010673 347 KKIL-SNKEALASCDVTIFVYDSS 369 (504)
Q Consensus 347 ~~~~-~~~~~~~~ad~iilV~D~s 369 (504)
.++. .....++.+|++++|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1111 1245678999999999974
No 305
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.76 E-value=4.4e-08 Score=79.03 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=59.0
Q ss_pred HHHHHHHHHhHhhhc-CCCCCc-cCHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICD-HDMDGA-LNDAELNEFQVKCF----NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D-~d~dG~-l~~~El~~~~~~~~----g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+..+..++++|..|| +|+||+ |+.+||..+++..+ +..+++++++.|++.++.+ ++|.|+|++|+.++.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-----~~G~I~f~eF~~l~~ 79 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-----GDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-----CCCcCcHHHHHHHHH
Confidence 566788999999997 999995 99999999987533 4467999999999999776 467799999998775
Q ss_pred H
Q 010673 127 L 127 (504)
Q Consensus 127 ~ 127 (504)
.
T Consensus 80 ~ 80 (92)
T cd05025 80 A 80 (92)
T ss_pred H
Confidence 4
No 306
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.74 E-value=2e-07 Score=90.82 Aligned_cols=123 Identities=12% Similarity=0.084 Sum_probs=70.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CC-CccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhh-hhhhc
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY--AP-TTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-NKEAL 356 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~-T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~-~~~~~ 356 (504)
..+.++|+++|.+||||||++|+|++....... .+ +..... ...... | ..+.++|++|......... ....+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~--~~~~~~-G-~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMM--VSRTRA-G-FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE--EEEEEC-C-eEEEEEECCCCCchHHHHHHHHHHH
Confidence 467889999999999999999999998764332 11 122211 122233 3 6778999999643211110 01111
Q ss_pred ------ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC
Q 010673 357 ------ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 357 ------~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
...|++++|..++.......-..+++.+...... .--.+.|+|.|+.|...
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hhhccEEEEEECCccCC
Confidence 2689999996654321111112233333332110 12357899999999764
No 307
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.74 E-value=1.8e-07 Score=96.99 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=104.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCC--CcEEEEEEecCChhhHhhhhhh---hhhc
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG--GNKKTLILQEIPEEGVKKILSN---KEAL 356 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~--~~~~~li~d~~g~~~~~~~~~~---~~~~ 356 (504)
...-.|+|+|..++|||||+.+|.+.+ .+.++.+-.|..-.+.-++ ...+.-+|--.|...+..+... ...+
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 344579999999999999999997653 3445666666554333221 1122334433333333444321 1222
Q ss_pred ccccEEEEEEeCCCcccH-HHHHHHHHHHHHh-------------------------cc---CC----------------
Q 010673 357 ASCDVTIFVYDSSDEYSW-KRTKELLVEVARL-------------------------GE---DS---------------- 391 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~-~~~~~~~~~l~~~-------------------------~~---~~---------------- 391 (504)
. --+||+|.|.+.|..+ +.+..|+..+.++ .. ..
T Consensus 100 ~-~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 100 P-NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred c-ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 2 2488999999999664 3444444433220 00 00
Q ss_pred ---------------CCCCcEEEEEECCCCCC----Cc--------cchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHH
Q 010673 392 ---------------GYGVPCLLIASKDDLKP----YT--------MAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 392 ---------------~~~~piilV~NK~Dl~~----~~--------~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~ 443 (504)
.-++|++||++|+|... +. .+.+.++.||-+||.. .+.+|++. .+++-|+.
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYK 257 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHH
Confidence 00479999999999632 11 1123688899999997 89999999 99999999
Q ss_pred HHHHHHhCCCC
Q 010673 444 RIIWAAEHPHL 454 (504)
Q Consensus 444 ~l~~~~~~~~~ 454 (504)
+|...+.....
T Consensus 258 yi~h~l~~~~f 268 (472)
T PF05783_consen 258 YILHRLYGFPF 268 (472)
T ss_pred HHHHHhccCCC
Confidence 99988765443
No 308
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.72 E-value=5.2e-08 Score=77.95 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=60.3
Q ss_pred HHHHHHHHHhHhhhcC--CCCCccCHHHHHHHHHHHcCCCC----CHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICDH--DMDGALNDAELNEFQVKCFNAPL----QPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~--d~dG~l~~~El~~~~~~~~g~~~----~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+++++.++++|..||+ |+||.|+.+||..+++..+|.++ +.++++.|+..++.+ ++|.|+|++|+.++.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-----~~g~I~f~eF~~~~~ 78 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-----KDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-----CCCcCcHHHHHHHHH
Confidence 6788999999999999 89999999999999876557555 599999999999776 466799999998775
Q ss_pred H
Q 010673 127 L 127 (504)
Q Consensus 127 ~ 127 (504)
.
T Consensus 79 ~ 79 (88)
T cd00213 79 K 79 (88)
T ss_pred H
Confidence 3
No 309
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.71 E-value=2.9e-08 Score=74.71 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHH----HHHhhhhccCCcCCCCCCHHhHHHHH
Q 010673 58 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV----KRVVQEKQHDGVNDLGLTLSGFLFLH 125 (504)
Q Consensus 58 ~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~----~~~~~~~~~~~~~~~~i~~~~Fl~l~ 125 (504)
.|+++|+.||+|+||+|+.+||..++.. ++...+++++..+ ++.+|.+ ++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~d-----~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKH-LGRDMSDEESDEMIDQIFREFDTD-----GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH-TTSHSTHHHHHHHHHHHHHHHTTT-----SSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCCC-----CcCCCcHHHHhccC
Confidence 3789999999999999999999999774 5777666555555 7777776 57779999998764
No 310
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.70 E-value=1e-07 Score=88.47 Aligned_cols=78 Identities=29% Similarity=0.360 Sum_probs=52.2
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcE--EEEEECCCCCCCc-cchHHHHHHHHHh-CCCCeEEEecc
Q 010673 359 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC--LLIASKDDLKPYT-MAVQDSARVTQEL-GIEPPIPVSMK 434 (504)
Q Consensus 359 ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pi--ilV~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~vSak 434 (504)
+|.+|.|+|+.+.++... .... .+.. ++|+||+|+.... ...+...+..+.+ ...+++++||+
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~-----------qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~ 179 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGP-----------GITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLK 179 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHh-----------HhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECC
Confidence 688999999987655321 1111 2333 8999999998531 1222334444443 33469999999
Q ss_pred c-cCHHHHHHHHHHHH
Q 010673 435 S-KDLNNVFSRIIWAA 449 (504)
Q Consensus 435 ~-~gi~el~~~l~~~~ 449 (504)
+ .|+++++++|.+.+
T Consensus 180 ~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 180 TKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 9 99999999998765
No 311
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.70 E-value=7.1e-08 Score=78.15 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=59.3
Q ss_pred HHHHHHHHHhHhhhcC-CC-CCccCHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICDH-DM-DGALNDAELNEFQVKC----FNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~-d~-dG~l~~~El~~~~~~~----~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+.....++++|..||. |+ ||+|+..||..+++.. +|..+++++++.|++.++.+ ++|.|+|++|+.++.
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-----~dg~I~f~eF~~l~~ 78 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-----RDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-----CCCcCcHHHHHHHHH
Confidence 4567889999999997 98 6999999999988753 47789999999999999776 467799999997764
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.68 E-value=2e-07 Score=92.42 Aligned_cols=102 Identities=10% Similarity=0.098 Sum_probs=61.7
Q ss_pred EEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc
Q 010673 333 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 412 (504)
Q Consensus 333 ~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 412 (504)
..+++++++|.... . ...+..+|.++++.+. .+-+++......+. ++|.++|+||+|+......
T Consensus 127 ~D~viidT~G~~~~-e----~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~--------~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 127 YDVIIVETVGVGQS-E----VDIANMADTFVVVTIP---GTGDDLQGIKAGLM--------EIADIYVVNKADGEGATNV 190 (300)
T ss_pred CCEEEEeCCCCchh-h----hHHHHhhceEEEEecC---CccHHHHHHHHHHh--------hhccEEEEEcccccchhHH
Confidence 44567777764211 1 2345678888888543 33344444333332 6788999999999864321
Q ss_pred hH-------HHHHHHHH-hCC-CCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 413 VQ-------DSARVTQE-LGI-EPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 413 ~~-------~~~~~~~~-~~~-~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.. ....+... .+. ++++++||++ .|+++++++|.+...
T Consensus 191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 11 01111111 122 2489999999 999999999998754
No 313
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.67 E-value=5.1e-08 Score=86.47 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=60.1
Q ss_pred HHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 54 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 54 ~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
.....+++||+.||+|+||+|+.+||..++.. +|.+++.++++.|++.++.+ ++|.|+|++|+.++.
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~-lg~~~~~~e~~~mi~~~d~d-----~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTS-LGEKLTDEECKEMIREVDVD-----GDGKVNFEEFVKMMS 148 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHH-hCCcCCHHHHHHHHHhcCCC-----CCCeEeHHHHHHHHh
Confidence 34669999999999999999999999999885 69999999999999999886 577799999998875
No 314
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.67 E-value=1.2e-07 Score=75.50 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=62.0
Q ss_pred HHHHHHHHHhHhhhcC-CC-CCccCHHHHHHHHHH--HcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHH
Q 010673 53 PRCVRALKRIFIICDH-DM-DGALNDAELNEFQVK--CFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 127 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~-d~-dG~l~~~El~~~~~~--~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~ 127 (504)
++++..+-++|..||. || +|+|+.+||...+.+ .+|.+++++|++.|++.++.+ ++|.|+|++|+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-----~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-----KDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-----CCCCCcHHHHHHHHHH
Confidence 6788999999999999 78 999999999999874 479999999999999999877 5677999999977653
No 315
>PF14658 EF-hand_9: EF-hand domain
Probab=98.62 E-value=7.9e-08 Score=70.53 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=55.8
Q ss_pred HhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHH
Q 010673 61 RIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 128 (504)
Q Consensus 61 ~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~ 128 (504)
.+|.+||.++.|.+...+|..+++.+-+..+++++|+++.+.+|.+ | .++.|+|++|+.+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~---g-~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPE---G-RDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCC---C-CCceEeHHHHHHHHHHh
Confidence 4899999999999999999999998855599999999999999766 3 24669999999998753
No 316
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.61 E-value=7.2e-07 Score=89.17 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=107.0
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCC--CCCC------------CCCccceEEEE--EEEcCCCcEEEEEEecCChhhHh
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPF--SENY------------APTTGEQYAVN--VVDQPGGNKKTLILQEIPEEGVK 347 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~--~~~~------------~~T~~~~~~~~--~v~~~~~~~~~li~d~~g~~~~~ 347 (504)
.-+|+|+-...-|||||+..|+.+.- .... ..-.+.++-.+ .+.++ ..++.++|++|+..+.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~--~~~INIvDTPGHADFG 82 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN--GTRINIVDTPGHADFG 82 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC--CeEEEEecCCCcCCcc
Confidence 34699999999999999999996542 1100 01112222222 24444 3788899999998775
Q ss_pred hhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--hHHHHHHHH----
Q 010673 348 KILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQ---- 421 (504)
Q Consensus 348 ~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~---- 421 (504)
+-. ...+.-.|.+++++|+.+..- ...+..++...+. +.+-|+|.||+|.+..+.. ..+.-.+.-
T Consensus 83 GEV--ERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A 153 (603)
T COG1217 83 GEV--ERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGA 153 (603)
T ss_pred chh--hhhhhhcceEEEEEEcccCCC-CchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 543 446788999999999987532 2235555555544 7888999999999875532 223333333
Q ss_pred ---HhCCCCeEEEeccc-----------cCHHHHHHHHHHHHhCCCC
Q 010673 422 ---ELGIEPPIPVSMKS-----------KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 422 ---~~~~~~~~~vSak~-----------~gi~el~~~l~~~~~~~~~ 454 (504)
++++| ++..|++. .++..||+.|++.+-.|.-
T Consensus 154 ~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 154 TDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred ChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 44555 78888864 3688999999999877764
No 317
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.61 E-value=8.5e-08 Score=86.95 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=104.4
Q ss_pred cCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHH
Q 010673 48 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 127 (504)
Q Consensus 48 ~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~ 127 (504)
....++.+++.+.+-|.. .--.|.++.+++..+....|...-+..=.+-+.+..|.+ .+|.|+|.+|+..+..
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~-----~dg~i~F~Efi~als~ 92 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN-----KDGTIDFLEFICALSL 92 (193)
T ss_pred hcCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-----CCCCcCHHHHHHHHHH
Confidence 345677777888788876 334789999999988776655333344445566777665 4667999999876655
Q ss_pred HHhcCCc-hhHHHHHHhhcCCCCccccCCCC-CCC--CC-CCCCCcc-ccChhHHHHHHHhhhhhcCCCCCCCCHHHHhh
Q 010673 128 FIEKGRL-ETTWAVLRKFGYGDDLELRDDFL-PVP--TK-LSPDQSV-ELASEAVEFLRGIFGLYDIDNDGAVRPAELED 201 (504)
Q Consensus 128 ~~~~~~~-e~~~~~~~~f~~d~~~~i~~~~l-~~~--~~-~~~~~~~-~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~ 201 (504)
.. +|.. |.+.-+|+.+|.|++|+|+.+++ ... +. ....... .-.....+.+..+|+++|.|+||.|+.+||..
T Consensus 93 ~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~ 171 (193)
T KOG0044|consen 93 TS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIE 171 (193)
T ss_pred Hc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHH
Confidence 43 4555 44656699999999999999887 511 11 1111100 11122237788999999999999999999987
Q ss_pred hhccCC
Q 010673 202 LFLTAP 207 (504)
Q Consensus 202 l~~~~p 207 (504)
-....|
T Consensus 172 ~~~~d~ 177 (193)
T KOG0044|consen 172 GCKADP 177 (193)
T ss_pred HhhhCH
Confidence 666544
No 318
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.60 E-value=1e-07 Score=83.49 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=59.0
Q ss_pred HHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 55 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 55 ~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
-..+|+++|++||+|+||+|+..||..++. .+|..++++|++.|++.++.+ ++|.|++++|..++.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-~lge~~~deev~~ll~~~d~d-----~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLK-SLGERLSDEEVEKLLKEYDED-----GDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHH-hhcccCCHHHHHHHHHhcCCC-----CCceEeHHHHHHHHh
Confidence 356899999999999999999999999977 679999999999999999876 467799999987654
No 319
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=1.8e-07 Score=80.13 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=59.2
Q ss_pred HHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 56 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
..+++.+|++||-|++|+||..+|..+.+. ||.+++++|+.+|++..+.+ +++.|+.++|+.+++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvake-LgenltD~El~eMIeEAd~d-----~dgevneeEF~~imk 169 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKE-LGENLTDEELMEMIEEADRD-----GDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHH-hCccccHHHHHHHHHHhccc-----ccccccHHHHHHHHh
Confidence 467899999999999999999999998775 69999999999999999887 688899999998875
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=9.9e-07 Score=87.01 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=32.4
Q ss_pred CCcEEEEEECCCCCCCccc--hHHHHHHHHHhCCCCeEEEeccc
Q 010673 394 GVPCLLIASKDDLKPYTMA--VQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 394 ~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
.+|+++|+||.|....... ...+++++...+.. ++++||+-
T Consensus 206 ~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~-vV~~sA~~ 248 (372)
T COG0012 206 AKPMLYVANVSEDDLANLNEYVKRLKELAAKENAE-VVPVSAAI 248 (372)
T ss_pred cCCeEEEEECCcccccchhHHHHHHHHHhhhcCCc-EEEeeHHH
Confidence 5799999999998775433 44777888887765 89999985
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.56 E-value=1.8e-06 Score=81.19 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=93.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCCC---C-CccceEEEEEEEcCCCcEEEEEEecCChhh--------Hhhhhhh
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENYA---P-TTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSN 352 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~~---~-T~~~~~~~~~v~~~~~~~~~li~d~~g~~~--------~~~~~~~ 352 (504)
++|+++|.+|+||||++|.+++........ + |.. .......+. | ..+.++|+||-.. ...+...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~--~~~~~~~~~-g-~~v~VIDTPGl~d~~~~~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE--CQKYSGEVD-G-RQVTVIDTPGLFDSDGSDEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS---EEEEEEET-T-EEEEEEE--SSEETTEEHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc--cceeeeeec-c-eEEEEEeCCCCCCCcccHHHHHHHHHHH
Confidence 489999999999999999999988754431 2 322 233334555 4 6677889887411 1112111
Q ss_pred -hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch--------HHHHHHHHHh
Q 010673 353 -KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV--------QDSARVTQEL 423 (504)
Q Consensus 353 -~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~--------~~~~~~~~~~ 423 (504)
.......|++|+|+... +-+-.+ ...+..+.+.... .--.-++||.|..|........ ..++++.++.
T Consensus 77 l~~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~-~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGE-EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp HHHTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCG-GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccH-HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc
Confidence 11245689999999998 434322 2223333322110 1124588899998876655421 1355677777
Q ss_pred CCCCeEEEecc------c-cCHHHHHHHHHHHHhCC
Q 010673 424 GIEPPIPVSMK------S-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 424 ~~~~~~~vSak------~-~gi~el~~~l~~~~~~~ 452 (504)
+-. ++.++.+ . ..+.+|++.|-+.+...
T Consensus 154 ~~R-~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 154 GGR-YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp TTC-EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCE-EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 765 7777776 2 45788888888877544
No 322
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.56 E-value=7.3e-07 Score=89.28 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=80.0
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC-CC-----CCccceEEEEEEEcCCCcEEEEEEecCChhhH----hhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KKIL 350 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~-~~-----~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~~~ 350 (504)
....++|+|+|.+|+|||||||+|.|-.-... .. .|+.. ...+..+ ....+.+||-+|.... ....
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~---~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl 107 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTME---PTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYL 107 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS----EEEE-S-S-TTEEEEEE--GGGSS--HHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCC---CeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHH
Confidence 34568999999999999999999976332111 11 12222 2223444 3345667777765221 1111
Q ss_pred hhhhhcccccEEEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCC--C-----C-----ccchHHHH
Q 010673 351 SNKEALASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLK--P-----Y-----TMAVQDSA 417 (504)
Q Consensus 351 ~~~~~~~~ad~iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~--~-----~-----~~~~~~~~ 417 (504)
. .-.+...|.+|++.+. .|... ..+...+.+. ++|+.+|-+|+|.. . + .+..+.++
T Consensus 108 ~-~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR 176 (376)
T PF05049_consen 108 K-EVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIR 176 (376)
T ss_dssp H-HTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHH
T ss_pred H-HccccccCEEEEEeCC----CCchhhHHHHHHHHHc------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHH
Confidence 1 1245678998887752 23322 3445556554 89999999999961 1 0 11122333
Q ss_pred HHHHH----hCC--CCeEEEeccc---cCHHHHHHHHHHHH
Q 010673 418 RVTQE----LGI--EPPIPVSMKS---KDLNNVFSRIIWAA 449 (504)
Q Consensus 418 ~~~~~----~~~--~~~~~vSak~---~gi~el~~~l~~~~ 449 (504)
+-|.+ .+. |++|.||+.+ .+...|.+.|.+.+
T Consensus 177 ~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 177 ENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 33322 233 4689999988 56888888888766
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.55 E-value=5.1e-07 Score=81.39 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=41.4
Q ss_pred EEEEecCChhhHhh--hhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECC
Q 010673 335 TLILQEIPEEGVKK--ILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 404 (504)
Q Consensus 335 ~li~d~~g~~~~~~--~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~ 404 (504)
+.++|+||-..... ..-+.+++..+|++|+|.++++..+-.....+.+..... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~------~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD------KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT------CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC------CCeEEEEEcCC
Confidence 34578877633211 111356789999999999999876655555555555433 45599999995
No 324
>PTZ00416 elongation factor 2; Provisional
Probab=98.55 E-value=4.2e-07 Score=101.82 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=76.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCcc------------ceEE--EEEEEcC--------CCcEEEEE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTG------------EQYA--VNVVDQP--------GGNKKTLI 337 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~------------~~~~--~~~v~~~--------~~~~~~li 337 (504)
.+..+|+|+|..++|||||+++|+...-... ..+++. .++. ...+.+. +....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3445899999999999999999986432111 011100 0011 1112222 11346778
Q ss_pred EecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 338 LQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 338 ~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
+|++|+..+..-. ...++.+|++|+|+|+.+.-..+. ..++..+... ++|++++.||+|+.
T Consensus 97 iDtPG~~~f~~~~--~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEV--TAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE------RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHH--HHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc------CCCEEEEEEChhhh
Confidence 9999997764333 457789999999999988644443 3455555543 78999999999987
No 325
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=4.9e-07 Score=83.41 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=62.5
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHH-----HHhCC--
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVT-----QELGI-- 425 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~-- 425 (504)
..+++++|++++|+|++++..- |...+... ..++|+++|+||+|+............+. +..+.
T Consensus 29 ~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 29 SSISPKKALVVHVVDIFDFPGS-----LIPRLRLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HhcccCCcEEEEEEECccCCCc-----cchhHHHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 4578999999999999886421 11222211 23689999999999976444333344443 33333
Q ss_pred CCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 426 EPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 426 ~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
..++++||++ .|++++++.|.+.+.
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2489999999 999999999998763
No 326
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.2e-07 Score=88.72 Aligned_cols=138 Identities=20% Similarity=0.140 Sum_probs=88.4
Q ss_pred HHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcC-Cc
Q 010673 56 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG-RL 134 (504)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~-~~ 134 (504)
+..=++=|+.-|.|+||.++.+|+++|+-=-=.-.+.+=-|..-+..+++| ++|.|+++||+.=+-..-+.+ .+
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn-----~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN-----GDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC-----CCCceeHHHHHhHHhhccCCCCCc
Confidence 344467899999999999999999988441100111111234444444444 477799999984332211111 11
Q ss_pred h---hHHHHHH-hhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 E---TTWAVLR-KFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e---~~~~~~~-~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
+ .-++.|. ..|.|+||.++.++| + .+ .|.+. ..+..+.+.|+-..|.|+||+|+.+|+..=+.+
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~-WI-~P~~~-----d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~ 305 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLD-WI-LPSEQ-----DHAKAEARHLLHEADEDKDGKLSKEEILEHYDV 305 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhc-cc-CCCCc-----cHHHHHHHHHhhhhccCccccccHHHHhhCcce
Confidence 1 2334454 459999999999999 6 33 12111 234478889999999999999999999764443
No 327
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.4e-06 Score=86.56 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=94.4
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCC-----------------C-------CCCC-----ccceEEEEEEEcCCC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE-----------------N-------YAPT-----TGEQYAVNVVDQPGG 331 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~-----------------~-------~~~T-----~~~~~~~~~v~~~~~ 331 (504)
.+..++++++|+..+|||||+-+|+-.--.. . ...| .+.++......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3566899999999999999999998432100 0 0000 112233333333333
Q ss_pred cEEEEEEecCChhhH-hhhhhhhhhcccccEEEEEEeCCCcccHHH-----HHHHHHHHHHhccCCCCCCcEEEEEECCC
Q 010673 332 NKKTLILQEIPEEGV-KKILSNKEALASCDVTIFVYDSSDEYSWKR-----TKELLVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 332 ~~~~li~d~~g~~~~-~~~~~~~~~~~~ad~iilV~D~s~~~s~~~-----~~~~~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
...+.++|.+|+..+ ..+ ..-..+||+.|+|+|+++.+...- ..+....+.+. ..-..+|++.||+|
T Consensus 84 k~~~tIiDaPGHrdFvknm---ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t----lGi~~lIVavNKMD 156 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNM---ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART----LGIKQLIVAVNKMD 156 (428)
T ss_pred CceEEEeeCCchHHHHHHh---hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh----cCCceEEEEEEccc
Confidence 456778999997655 333 346689999999999998742111 11111222222 22456899999999
Q ss_pred CCCCccc-----hHHHHHHHHHhCCC----CeEEEeccc-cCHHH
Q 010673 406 LKPYTMA-----VQDSARVTQELGIE----PPIPVSMKS-KDLNN 440 (504)
Q Consensus 406 l~~~~~~-----~~~~~~~~~~~~~~----~~~~vSak~-~gi~e 440 (504)
..+-++. ..++..+.+..|+. ++++||+.. .|+.+
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 9863322 22455577777765 489999999 88754
No 328
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.50 E-value=2.6e-06 Score=78.68 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=99.4
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhH----hh-hhhhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK-ILSNKEA 355 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~-~~~~~~~ 355 (504)
...-.+|+++|.|.||||||+..++...........+.-+.....+.++ | ..+.++|-+|.-.- .+ -.+....
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~-g-a~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYN-G-ANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEec-C-ceEEEecCcccccccccCCCCCceEEEE
Confidence 3455789999999999999999998766543332322222333345555 3 44556666654111 11 1112345
Q ss_pred cccccEEEEEEeCCCcccHHH-HHHHHHHH--------------------------------------------HHhcc-
Q 010673 356 LASCDVTIFVYDSSDEYSWKR-TKELLVEV--------------------------------------------ARLGE- 389 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~-~~~~~~~l--------------------------------------------~~~~~- 389 (504)
.+.||+|+.|.|++..+.-.. +++-++.+ +-+..
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Nae 216 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAE 216 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccce
Confidence 688999999999987543221 11111111 10000
Q ss_pred -----------------CCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 390 -----------------DSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 390 -----------------~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
....-+||+.|-||+|..+ .+++..++++ |+.+.+||.- .|++.+++.|.+.+.-
T Consensus 217 vl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs----~eevdrlAr~---PnsvViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 217 VLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS----IEEVDRLARQ---PNSVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred EEEecCCChHHHHHHHhccceEEEEEEEeeccceec----HHHHHHHhcC---CCcEEEEeccccCHHHHHHHHHHHhce
Confidence 0012358999999999876 3345556555 4468899999 9999999999998743
No 329
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.49 E-value=7.3e-07 Score=100.12 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=77.1
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCc------------cceEE--EEEEEc--------------CC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTT------------GEQYA--VNVVDQ--------------PG 330 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~------------~~~~~--~~~v~~--------------~~ 330 (504)
..+..+|+|+|+.++|||||+.+|+...-.... ..++ +.++. ...+.+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445668999999999999999999865421110 0000 00111 111222 11
Q ss_pred CcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 331 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 331 ~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
....+.++|++|+..+..-. ...++.+|++|+|+|+.+.-.... ...+..+... ++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~--~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~~------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEV--TAALRITDGALVVVDCIEGVCVQT-ETVLRQALGE------RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHH--HHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHHC------CCCEEEEEECCccc
Confidence 23556789999997774433 456789999999999998755444 3344555533 89999999999987
No 330
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.49 E-value=2.5e-06 Score=80.97 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=35.5
Q ss_pred hhhcc-cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 353 KEALA-SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 353 ~~~~~-~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
..+++ ..++|++|+|++..-+-.....+.+.+... +.|+++|+||+|..++.
T Consensus 156 ~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~------~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 156 KQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ------GERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc------CCcEEEEEECCCCCCcc
Confidence 45677 456999999987543323334555555433 78999999999987643
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.49 E-value=3.4e-07 Score=91.94 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=65.2
Q ss_pred hhcccccEEEEEEeCCCcc-cHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEe
Q 010673 354 EALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
..+.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+....+. ....+....++++ ++.+|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------~~ip~ILVlNK~DLv~~~~~-~~~~~~~~~~g~~-v~~iS 156 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAES------TGLEIVLCLNKADLVSPTEQ-QQWQDRLQQWGYQ-PLFIS 156 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEchhcCChHHH-HHHHHHHHhcCCe-EEEEE
Confidence 3578999999999999875 45566777776643 38999999999999754322 2222333567775 89999
Q ss_pred ccc-cCHHHHHHHHHH
Q 010673 433 MKS-KDLNNVFSRIIW 447 (504)
Q Consensus 433 ak~-~gi~el~~~l~~ 447 (504)
|++ .|+++|++.|..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 999 999999998865
No 332
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.4e-06 Score=83.43 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=102.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCC---C--Ccc-----------------ceEEEE-EEEcCCCc----EE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA---P--TTG-----------------EQYAVN-VVDQPGGN----KK 334 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~---~--T~~-----------------~~~~~~-~v~~~~~~----~~ 334 (504)
...++|.++|.-.-|||||.++|.+--....+. - |+. ..+... .....+.. ..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 457899999999999999999999742211000 0 000 001000 01111111 23
Q ss_pred EEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH
Q 010673 335 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ 414 (504)
Q Consensus 335 ~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 414 (504)
.-++|.+|++..-.-. .+-..-.|+.++|++++.+..-.+..+-+..+.-. .-..+|+|-||+|+...+...+
T Consensus 88 VSfVDaPGHe~LMATM--LsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-----gik~iiIvQNKIDlV~~E~AlE 160 (415)
T COG5257 88 VSFVDAPGHETLMATM--LSGAALMDGALLVIAANEPCPQPQTREHLMALEII-----GIKNIIIVQNKIDLVSRERALE 160 (415)
T ss_pred EEEeeCCchHHHHHHH--hcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-----ccceEEEEecccceecHHHHHH
Confidence 3468888887653322 23344579999999998764433333334333322 2467899999999998665544
Q ss_pred ---HHHHHHHHhCCC--CeEEEeccc-cCHHHHHHHHHHHHhCCC
Q 010673 415 ---DSARVTQELGIE--PPIPVSMKS-KDLNNVFSRIIWAAEHPH 453 (504)
Q Consensus 415 ---~~~~~~~~~~~~--~~~~vSak~-~gi~el~~~l~~~~~~~~ 453 (504)
++.+|.+---.. +++++||.. .||+.|++.|.+.+-.|.
T Consensus 161 ~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 161 NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 455554432221 589999999 999999999999875554
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.47 E-value=6.3e-07 Score=79.88 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=60.4
Q ss_pred hhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEec
Q 010673 354 EALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 433 (504)
..++++|++++|+|++++..... ..+...+. ..++|+++|+||+|+...... .....+....+.+ ++.+||
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~------~~~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~-~~~iSa 78 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRS-RKLERYVL------ELGKKLLIVLNKADLVPKEVL-EKWKSIKESEGIP-VVYVSA 78 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH------hCCCcEEEEEEhHHhCCHHHH-HHHHHHHHhCCCc-EEEEEc
Confidence 45677999999999988654332 22322232 226899999999998643221 1222333444544 899999
Q ss_pred cc-cCHHHHHHHHHHHHh
Q 010673 434 KS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~ 450 (504)
++ .|++++++.|.+.+.
T Consensus 79 ~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 79 KERLGTKILRRTIKELAK 96 (156)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 99 999999999998764
No 334
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=9.7e-07 Score=92.45 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=100.6
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC----------------CCcEEEEEEecCChhhH
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------------GGNKKTLILQEIPEEGV 346 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~----------------~~~~~~li~d~~g~~~~ 346 (504)
+.+-|||+|...+|||-|+..+.+.++.....+++...+....+... -..+-+++||++|++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34569999999999999999999877654433322211111111110 01235788999999988
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--------------
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA-------------- 412 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------- 412 (504)
..+.+ .....||.+|+|+|+...-.-+.+. -++.++ ..+.|+||++||+|..-....
T Consensus 554 tnlRs--rgsslC~~aIlvvdImhGlepqtiE-Si~lLR------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 554 TNLRS--RGSSLCDLAILVVDIMHGLEPQTIE-SINLLR------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhh--ccccccceEEEEeehhccCCcchhH-HHHHHH------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 87763 4667899999999997642222221 233344 348999999999997421110
Q ss_pred hHHH-----------HHHHHH-hC---------CC---CeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 413 VQDS-----------ARVTQE-LG---------IE---PPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 413 ~~~~-----------~~~~~~-~~---------~~---~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
.... .+|+.+ ++ .. ..+++||.+ +||.+|+-.|+++.+
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0011 122221 11 01 258999999 999999999988753
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.46 E-value=3.4e-07 Score=81.70 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred hhcccccEEEEEEeCCCccc--HHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEE
Q 010673 354 EALASCDVTIFVYDSSDEYS--WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPV 431 (504)
Q Consensus 354 ~~~~~ad~iilV~D~s~~~s--~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 431 (504)
..+.++|++++|+|++++.. ...+.+++. .. ..++|+++|.||+|+..+.........+.+.+... .+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~----~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~-~~~i 75 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE----KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTI-AFHA 75 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hc----cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEE-EEEe
Confidence 46789999999999998743 223333332 22 23689999999999975433222333333333222 4789
Q ss_pred eccc-cCHHHHHHHHHHHH
Q 010673 432 SMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 432 Sak~-~gi~el~~~l~~~~ 449 (504)
||+. .|++++++.|.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999 99999999998765
No 336
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.45 E-value=1e-06 Score=70.30 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=60.2
Q ss_pred HHHHHHHHHhHhh-hcCCCCC-ccCHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFII-CDHDMDG-ALNDAELNEFQVKCF----NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~-~D~d~dG-~l~~~El~~~~~~~~----g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+.++..|..+|+. +|+|||| .||.+||..++..-+ +...++.+++.|++.++.+ ++|.|+|++|+.++.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-----~DG~I~f~EF~~l~~ 79 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-----SDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-----CCCcCcHHHHHHHHH
Confidence 6788999999999 8899997 999999999988765 4566789999999999887 577799999997765
Q ss_pred H
Q 010673 127 L 127 (504)
Q Consensus 127 ~ 127 (504)
.
T Consensus 80 ~ 80 (89)
T cd05023 80 G 80 (89)
T ss_pred H
Confidence 3
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.45 E-value=5.7e-07 Score=88.92 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=64.7
Q ss_pred hcccccEEEEEEeCCCcccHHH-HHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEec
Q 010673 355 ALASCDVTIFVYDSSDEYSWKR-TKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 433 (504)
.+.++|++++|+|++++.++.. +..|+..+... ++|+++|+||+|+...........+..+.++.+ ++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~------~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN------GIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC------CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEeC
Confidence 4689999999999998876544 46777766543 799999999999974333222344455667775 899999
Q ss_pred cc-cCHHHHHHHHH
Q 010673 434 KS-KDLNNVFSRII 446 (504)
Q Consensus 434 k~-~gi~el~~~l~ 446 (504)
++ .|++++++.+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99 99999998874
No 338
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.44 E-value=3.3e-06 Score=81.90 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=97.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCC----------CC--CCCcc---------------------ceEEEEEEE
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSE----------NY--APTTG---------------------EQYAVNVVD 327 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~----------~~--~~T~~---------------------~~~~~~~v~ 327 (504)
.+..++++-+|...=||||||-||+...-.. .+ ..|.+ .++..+.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3567899999999999999999999654311 01 12221 122233333
Q ss_pred cCCCcEEEEEEecCChhhH-hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCC
Q 010673 328 QPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 406 (504)
Q Consensus 328 ~~~~~~~~li~d~~g~~~~-~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 406 (504)
. .+.++++-|++|++++ +.|. .-...||+.|+++|+...- ....+-...+... ..-..+++..||+||
T Consensus 83 T--~KRkFIiADTPGHeQYTRNMa---TGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sL----LGIrhvvvAVNKmDL 151 (431)
T COG2895 83 T--EKRKFIIADTPGHEQYTRNMA---TGASTADLAILLVDARKGV--LEQTRRHSFIASL----LGIRHVVVAVNKMDL 151 (431)
T ss_pred c--ccceEEEecCCcHHHHhhhhh---cccccccEEEEEEecchhh--HHHhHHHHHHHHH----hCCcEEEEEEeeecc
Confidence 3 4577888999999887 4443 2457899999999995432 1111112222222 223568899999999
Q ss_pred CCCccc-----hHHHHHHHHHhCCC--CeEEEeccc-cCHH
Q 010673 407 KPYTMA-----VQDSARVTQELGIE--PPIPVSMKS-KDLN 439 (504)
Q Consensus 407 ~~~~~~-----~~~~~~~~~~~~~~--~~~~vSak~-~gi~ 439 (504)
.+-.+. ..+...|+.++++. .++++||.. +|+.
T Consensus 152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 875543 23667889999976 579999999 8874
No 339
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.44 E-value=9.3e-07 Score=84.26 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=56.7
Q ss_pred EEEEEecCChhhHhhhhhh----hhhcc--cccEEEEEEeCCCcccHH-HHHHHHHH---HHHhccCCCCCCcEEEEEEC
Q 010673 334 KTLILQEIPEEGVKKILSN----KEALA--SCDVTIFVYDSSDEYSWK-RTKELLVE---VARLGEDSGYGVPCLLIASK 403 (504)
Q Consensus 334 ~~li~d~~g~~~~~~~~~~----~~~~~--~ad~iilV~D~s~~~s~~-~~~~~~~~---l~~~~~~~~~~~piilV~NK 403 (504)
.++++|+||+.+....+.. .+.+. ..-++++++|+....+.. .+..++.. +.+. +.|.|.|.||
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~------~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL------ELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH------TSEEEEEE--
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC------CCCEEEeeec
Confidence 6788999999665433321 12222 345889999986443311 11222222 2223 8999999999
Q ss_pred CCCCCCc--cch------------------HHHHHHHH---HhCCC-CeEEEeccc-cCHHHHHHHHHHHH
Q 010673 404 DDLKPYT--MAV------------------QDSARVTQ---ELGIE-PPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 404 ~Dl~~~~--~~~------------------~~~~~~~~---~~~~~-~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
+|+.+.. ... ...++++. .++.. .++++|+++ +|+++++..|-+..
T Consensus 166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9998732 000 01112222 22343 589999999 99999999987764
No 340
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.43 E-value=1.1e-06 Score=89.19 Aligned_cols=122 Identities=21% Similarity=0.283 Sum_probs=81.7
Q ss_pred ChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH----HHH
Q 010673 342 PEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ----DSA 417 (504)
Q Consensus 342 g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~ 417 (504)
..+.+..+. ..+...++++++|+|+.+.. ..|...+.+. ..+.|+++|+||+|+.......+ ...
T Consensus 49 ~~e~f~~~l--~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~----~~~~piilV~NK~DLl~k~~~~~~~~~~l~ 117 (360)
T TIGR03597 49 NDDDFLNLL--NSLGDSNALIVYVVDIFDFE-----GSLIPELKRF----VGGNPVLLVGNKIDLLPKSVNLSKIKEWMK 117 (360)
T ss_pred CHHHHHHHH--hhcccCCcEEEEEEECcCCC-----CCccHHHHHH----hCCCCEEEEEEchhhCCCCCCHHHHHHHHH
Confidence 445566654 34668899999999997754 2244444443 23689999999999976443322 333
Q ss_pred HHHHHhCCC--CeEEEeccc-cCHHHHHHHHHHHHhCCCCCCCCcccccchhhHHhhhcc
Q 010673 418 RVTQELGIE--PPIPVSMKS-KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNS 474 (504)
Q Consensus 418 ~~~~~~~~~--~~~~vSak~-~gi~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 474 (504)
++++++++. .++.+||++ .|++++++.|.+.........-+......+...++++++
T Consensus 118 ~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 118 KRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred HHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhh
Confidence 456777764 589999999 999999999977643333344444555555566666553
No 341
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=4.3e-06 Score=83.76 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=103.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCC----CCCccceEEEEEEEcCCCcEEEEEEecCChhhH-hhhhhhhhhccccc
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENY----APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCD 360 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-~~~~~~~~~~~~ad 360 (504)
.|+-.|.---|||||+..+++..-..-. .+++. ++.......+ ....-++|.+|++.+ ..+ ...+...|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~Ti-Dlg~~y~~~~--d~~~~fIDvpgh~~~i~~m---iag~~~~d 75 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITI-DLGFYYRKLE--DGVMGFIDVPGHPDFISNL---LAGLGGID 75 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceE-eeeeEeccCC--CCceEEeeCCCcHHHHHHH---HhhhcCCc
Confidence 4677888999999999999987653321 22222 2333234444 347778899998765 333 45667899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCC--CCeEEEeccc-cC
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGI--EPPIPVSMKS-KD 437 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSak~-~g 437 (504)
..++|+|+++.-.-+..+ .+.-+... .....++|+||+|+.++....+..+++...+.+ .+++.+|+++ +|
T Consensus 76 ~alLvV~~deGl~~qtgE-hL~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 76 YALLVVAADEGLMAQTGE-HLLILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred eEEEEEeCccCcchhhHH-HHHHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence 999999997654333322 22222222 234569999999999876555555555555443 2579999999 99
Q ss_pred HHHHHHHHHHHHh
Q 010673 438 LNNVFSRIIWAAE 450 (504)
Q Consensus 438 i~el~~~l~~~~~ 450 (504)
|++|.+.|.+.+.
T Consensus 150 I~~Lk~~l~~L~~ 162 (447)
T COG3276 150 IEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999875
No 342
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.40 E-value=1.7e-06 Score=95.98 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=74.3
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CC----------------CccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--AP----------------TTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~----------------T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
.+.-+|+|+|+.++|||||+.+|+...-.... .+ |+......-.+...+....+.++|++|+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 44567999999999999999999853321110 00 1111011111222323466778999998
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
..+.... ...+..+|++|+|+|+...-..+. ...+..+.+. ++|+|++.||+|+.
T Consensus 98 ~df~~~~--~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~------~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDV--TRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE------RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHH--HHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc------CCCeEEEEECchhh
Confidence 7764332 457789999999999987644333 3334443333 57889999999986
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.39 E-value=1.2e-06 Score=86.18 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred hcccccEEEEEEeCCCcc-cHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEec
Q 010673 355 ALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 433 (504)
.+.++|++++|+|+.++. ++..+..|+..+... ++|+++|+||+|+..... ......+....+.+ ++.+||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~------~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~g~~-v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA------GIEPVIVLTKADLLDDEE-EELELVEALALGYP-VLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc------CCCEEEEEEHHHCCChHH-HHHHHHHHHhCCCe-EEEEEC
Confidence 578999999999999997 888888888877643 799999999999976422 11223334556665 899999
Q ss_pred cc-cCHHHHHHHHHH
Q 010673 434 KS-KDLNNVFSRIIW 447 (504)
Q Consensus 434 k~-~gi~el~~~l~~ 447 (504)
++ .|+++|+..|..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 99 999999988764
No 344
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.38 E-value=1.2e-06 Score=65.85 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHH
Q 010673 59 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 127 (504)
Q Consensus 59 l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~ 127 (504)
++++|..+|.|+||.|+.+||..+++. +| +++++++.++..++.+ ++|.|++++|+.++..
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~-~g--~~~~~~~~i~~~~d~~-----~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGK-SG--LPRSVLAQIWDLADTD-----KDGKLDKEEFAIAMHL 61 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHH-cC--CCHHHHHHHHHHhcCC-----CCCcCCHHHHHHHHHH
Confidence 468999999999999999999998875 36 4899999999999776 4667999999977654
No 345
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.37 E-value=3.3e-07 Score=76.88 Aligned_cols=94 Identities=23% Similarity=0.303 Sum_probs=73.2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCc-hhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcC
Q 010673 112 NDLGLTLSGFLFLHALFIEKGRL-ETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDI 188 (504)
Q Consensus 112 ~~~~i~~~~Fl~l~~~~~~~~~~-e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~ 188 (504)
+.|-++|++|+.+...+-+.... -...-+|+.+|+|+|++|..+.| . .+..- .-.+||.... ..+..++++.|.
T Consensus 84 G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~-~l~~l--Tr~eLs~eEv~~i~ekvieEAD~ 160 (189)
T KOG0038|consen 84 GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEK-TLTSL--TRDELSDEEVELICEKVIEEADL 160 (189)
T ss_pred CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHH-HHHHH--hhccCCHHHHHHHHHHHHHHhcC
Confidence 45669999999998887765433 35778999999999999999888 4 22110 0026775554 667789999999
Q ss_pred CCCCCCCHHHHhhhhccCCC
Q 010673 189 DNDGAVRPAELEDLFLTAPE 208 (504)
Q Consensus 189 d~dG~l~~~e~~~l~~~~p~ 208 (504)
||||+|++.||..+....|.
T Consensus 161 DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 161 DGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred CCCCcccHHHHHHHHHhCcc
Confidence 99999999999999998876
No 346
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.36 E-value=6.6e-07 Score=86.63 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=39.1
Q ss_pred CCcEEEEEECCCCCCCc--cchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHH
Q 010673 394 GVPCLLIASKDDLKPYT--MAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 394 ~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~ 448 (504)
..+-++|+||+|+.... ......+.+.+.....+++++||++ .|++++.++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999997532 1222333444444444689999999 9999999999764
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.36 E-value=1.2e-06 Score=82.50 Aligned_cols=152 Identities=15% Similarity=0.198 Sum_probs=83.5
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcC------CCCC----CCCCCc----------------cceEEEEEEEcCCC----
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLER------PFSE----NYAPTT----------------GEQYAVNVVDQPGG---- 331 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~------~~~~----~~~~T~----------------~~~~~~~~v~~~~~---- 331 (504)
.+.+.|.|-|+||+|||||+++|... .+.. .++|.+ .....++.+...+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35679999999999999999998732 1100 011111 12234444433210
Q ss_pred --------------cEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcE
Q 010673 332 --------------NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPC 397 (504)
Q Consensus 332 --------------~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pi 397 (504)
..-++++.|.|.-+.+ .....-+|.+++|.-..-.+..+-++.=+-++ +=
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-----------aD 170 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-----------AD 170 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH------------S
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-----------cc
Confidence 0234455665531111 12346799999999887666655433323222 33
Q ss_pred EEEEECCCCCCCccchHHHHHHHHHhC------CCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 398 LLIASKDDLKPYTMAVQDSARVTQELG------IEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 398 ilV~NK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
++|.||+|+........+.+....... .|+++.+||.+ .||++|++.|.+..
T Consensus 171 i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 171 IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 899999996543333223333333221 23689999999 99999999998864
No 348
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=2.1e-06 Score=86.32 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=75.8
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc--hHHHHHHHHHhCCCCeEEEec
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA--VQDSARVTQELGIEPPIPVSM 433 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~vSa 433 (504)
..++|.+++|++++...++..+..|+..+.. .++|+++|+||+|+...... ........+.++.+ ++++||
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~-v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYR-VLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCe-EEEEeC
Confidence 4689999999999888899999999876653 37999999999999764321 12222333456765 899999
Q ss_pred cc-cCHHHHHHHHHHHHhCCCCCCCCcccccchhhHHhhhcc
Q 010673 434 KS-KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNS 474 (504)
Q Consensus 434 k~-~gi~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 474 (504)
++ .|+++|++.|...+ ...-+.....++...+.|+.+
T Consensus 191 ~tg~GideL~~~L~~ki----~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 191 HTGEGLEELEAALTGRI----SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CCCcCHHHHHHHHhhCC----EEEECCCCCCHHHHHHHhccc
Confidence 99 99999999987532 222333333444455555544
No 349
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.33 E-value=1.2e-06 Score=88.93 Aligned_cols=156 Identities=15% Similarity=0.294 Sum_probs=112.8
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT 362 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~i 362 (504)
..+|+.|||..++|||+|+.+++...+.....| .+..+... +.++ |+...+.+.+.|+... ..+....|++
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE-~vv~-gqs~lLlirdeg~~~~------aQft~wvdav 99 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKE-VVVD-GQSHLLLIRDEGGHPD------AQFCQWVDAV 99 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCC-cCccceee-EEee-ccceEeeeecccCCch------hhhhhhccce
Confidence 457999999999999999999999888765543 33334443 4445 5555665555555222 2355789999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCcc--c-hHHHHHHHHHhCCCCeEEEeccc-cCH
Q 010673 363 IFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTM--A-VQDSARVTQELGIEPPIPVSMKS-KDL 438 (504)
Q Consensus 363 ilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~--~-~~~~~~~~~~~~~~~~~~vSak~-~gi 438 (504)
||||.+.+..+|+.+..+...+..+.. ...+|+++|+++.=...... . .....+++.++.-..++++++.+ .++
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRN--ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccc--cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 999999999999999888888776543 56889999998765433222 1 22555555555544589999999 999
Q ss_pred HHHHHHHHHHH
Q 010673 439 NNVFSRIIWAA 449 (504)
Q Consensus 439 ~el~~~l~~~~ 449 (504)
...|+.+....
T Consensus 178 ~rvf~~~~~k~ 188 (749)
T KOG0705|consen 178 ERVFQEVAQKI 188 (749)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 350
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=1.7e-06 Score=79.00 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=79.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCC-CCCCccceEEEEEEEcCCCcEEEEEEecCChhhH-hhhhh--hhhhccccc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILS--NKEALASCD 360 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~-~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-~~~~~--~~~~~~~ad 360 (504)
-||+++|.+|+||||+=-.+..+...-. ..++...++....+.+- |..++..||..|++.+ +...+ ....+++.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4799999999999998655554332221 12222222333335555 5566667888887644 33322 245678999
Q ss_pred EEEEEEeCCCcccHHHH---HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc
Q 010673 361 VTIFVYDSSDEYSWKRT---KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 412 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~---~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 412 (504)
++++|||++..+-..++ +.-++.+.++ .+...+.+...|.|+......
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~----SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN----SPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc----CCcceEEEEEeechhcccchH
Confidence 99999999887544333 4444555555 678889999999999875543
No 351
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.31 E-value=5.8e-06 Score=74.26 Aligned_cols=53 Identities=32% Similarity=0.372 Sum_probs=38.1
Q ss_pred EEEEEECCCCCCCccc-hHHHHHHHHHhC-CCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 397 CLLIASKDDLKPYTMA-VQDSARVTQELG-IEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 397 iilV~NK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
=++|.||.|+...-.. .+...+-+++.+ -.+++++|+++ +|++++++++...+
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3899999999875443 233444444443 33699999999 99999999987654
No 352
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.3e-05 Score=75.96 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=105.0
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCC------C-----CCCCC---CccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPF------S-----ENYAP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~------~-----~~~~~---T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
....++|..+|.-+-|||||..+++.--. . ....| ..+.+++...+++.-+...+-.+|.+|+..+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 45678999999999999999988873110 0 11111 2234444445555555567778999999666
Q ss_pred -hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccchH----HHHHHH
Q 010673 347 -KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAVQ----DSARVT 420 (504)
Q Consensus 347 -~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~----~~~~~~ 420 (504)
..+. .-..+.|+.|+|+.+++..--+..+.++ ..++. ++| ++++.||+|+.++.+..+ +++++.
T Consensus 89 vKNMI---tgAaqmDgAILVVsA~dGpmPqTrEHiL-larqv------Gvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 89 VKNMI---TGAAQMDGAILVVAATDGPMPQTREHIL-LARQV------GVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHh---hhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhc------CCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 5554 2446899999999999864333322222 22222 564 678889999998766543 788999
Q ss_pred HHhCCC----CeEEEeccc--cC-------HHHHHHHHHHHHhCC
Q 010673 421 QELGIE----PPIPVSMKS--KD-------LNNVFSRIIWAAEHP 452 (504)
Q Consensus 421 ~~~~~~----~~~~vSak~--~g-------i~el~~~l~~~~~~~ 452 (504)
..|+++ |++.-||.. +| |.+|++.+-+.+..|
T Consensus 159 s~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 999987 456666654 33 456666665554433
No 353
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=3e-06 Score=81.10 Aligned_cols=186 Identities=16% Similarity=0.178 Sum_probs=112.1
Q ss_pred cchH-HHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHH
Q 010673 50 TLKP-RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF 128 (504)
Q Consensus 50 ~l~~-~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~ 128 (504)
+|++ +....|.++|...|.|+||.++..||.+|....+.... ..+...-....+.+ .+|.|++++++...-.+
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v-~~~~~~~~~~~d~~-----~Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYV-VEEAARRWDEYDKN-----KDGFITWEEYLPQTYGR 142 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-----ccceeeHHHhhhhhhhc
Confidence 3443 34568999999999999999999999999776533222 22222222223222 35669999998655432
Q ss_pred -------HhcCCchh----HH---HHHHhhcCCCCccccCCCCCCCCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCC
Q 010673 129 -------IEKGRLET----TW---AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAV 194 (504)
Q Consensus 129 -------~~~~~~e~----~~---~~~~~f~~d~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l 194 (504)
......++ +| .-|++-|.|++|.++.+++- .+.-|.+ .-.|.. -.|.+-....|+|+||+|
T Consensus 143 ~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~-aFLHPEe-~p~M~~---iVi~Etl~d~Dkn~DG~I 217 (325)
T KOG4223|consen 143 VDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFT-AFLHPEE-HPHMKD---IVIAETLEDIDKNGDGKI 217 (325)
T ss_pred ccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHH-hccChhh-cchHHH---HHHHHHHhhcccCCCCce
Confidence 22222222 22 35677799999999987662 2212211 111211 345566777899999999
Q ss_pred CHHHH-hhhhccCCC--CC-CCCCc---cccccccccCCcccHHHHHHhhhhhhccCHHH
Q 010673 195 RPAEL-EDLFLTAPE--SP-WDEAP---YKDAAETTALGNLTLKGFVSKWALMTLLDPRH 247 (504)
Q Consensus 195 ~~~e~-~~l~~~~p~--~p-~~~~~---~~~~~~~~~~g~i~~~~~l~~w~~~~~~~~~~ 247 (504)
+++|| ..|++..+. -| |.-.. |..--..|..|.+.-..-+ .|.+..-.++-.
T Consensus 218 ~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~-~WI~P~~~d~A~ 276 (325)
T KOG4223|consen 218 SLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL-DWILPSEQDHAK 276 (325)
T ss_pred eHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh-cccCCCCccHHH
Confidence 99999 567766532 23 75332 2233345677888754443 677766554433
No 354
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.1e-05 Score=74.87 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=96.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCC----CCCCCCcc-c----eEEEEEEE----cCC-CcEEEEEEecCChhhH-
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFS----ENYAPTTG-E----QYAVNVVD----QPG-GNKKTLILQEIPEEGV- 346 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~----~~~~~T~~-~----~~~~~~v~----~~~-~~~~~li~d~~g~~~~- 346 (504)
+..+++.++|.-.+|||+|.++|..-... .....+.+ . .+..-.+. ++. ...++.++|.+|+...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 44589999999999999999999854321 11111111 1 11111111 111 2234456888887432
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHH-HHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh--
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKEL-LVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL-- 423 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~-~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-- 423 (504)
+.+ .....-.|..++|+|+.....-+.++-+ +.++. ....|+|.||+|...+.+....+++.+++.
T Consensus 85 Rti---iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--------c~klvvvinkid~lpE~qr~ski~k~~kk~~K 153 (522)
T KOG0461|consen 85 RTI---IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--------CKKLVVVINKIDVLPENQRASKIEKSAKKVRK 153 (522)
T ss_pred HHH---HhhhheeeeeeEEEehhcccccccchhhhhhhhh--------ccceEEEEeccccccchhhhhHHHHHHHHHHH
Confidence 333 2234557899999999865333332222 22222 356788999999877655433333333322
Q ss_pred -----CC---CCeEEEeccc-----cCHHHHHHHHHHHHhCCCC
Q 010673 424 -----GI---EPPIPVSMKS-----KDLNNVFSRIIWAAEHPHL 454 (504)
Q Consensus 424 -----~~---~~~~~vSak~-----~gi~el~~~l~~~~~~~~~ 454 (504)
++ .|++++||+. ++|.+|.+.|.+.+..|.-
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 22 2589999986 4688888888888877653
No 355
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.26 E-value=1.4e-05 Score=84.40 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=73.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC---CCCccceEEEEEEEcCCCcEEEEEEecCChhhH-------hhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY---APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKIL 350 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~---~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-------~~~~ 350 (504)
..-.++|+++|.+||||||++|.|++....... ..|+.. ... ..... | ..+.++|++|-... ..+.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei-~~~id-G-~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEI-EGLVQ-G-VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEE-EEEEC-C-ceEEEEECCCCCccccchHHHHHHH
Confidence 455679999999999999999999998754332 234432 111 12233 3 56778899886421 1121
Q ss_pred hh-hhhcc--cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC
Q 010673 351 SN-KEALA--SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 409 (504)
Q Consensus 351 ~~-~~~~~--~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 409 (504)
.. ..++. .+|+||+|..++.......-..+++.+...... .--.-+|||.|+.|...+
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~-~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP-SIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH-HhHcCEEEEEeCCccCCC
Confidence 11 12333 489999999876433321223445555443210 112467999999998753
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.25 E-value=2.4e-06 Score=76.03 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=54.7
Q ss_pred cEEEEEEeCCCcccHHHHHHHHH--HHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-c
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLV--EVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-K 436 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~--~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~ 436 (504)
|++++|+|++++.+... .++. .+. ..++|+++|+||+|+....+.......+....+. .++.+||++ .
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~------~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~-~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK------EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPT-IPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh------cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCc-eEEEEeccCCc
Confidence 78999999998865442 2222 222 2379999999999996543222222334333333 479999999 9
Q ss_pred CHHHHHHHHHHH
Q 010673 437 DLNNVFSRIIWA 448 (504)
Q Consensus 437 gi~el~~~l~~~ 448 (504)
|++++.+.|.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999998765
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.19 E-value=4.7e-06 Score=81.60 Aligned_cols=99 Identities=22% Similarity=0.164 Sum_probs=64.4
Q ss_pred cCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHH
Q 010673 340 EIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARV 419 (504)
Q Consensus 340 ~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~ 419 (504)
-+|+ ....+......+..+|+|++|+|+.++.+... .. +..+. .+.|+++|.||+|+..........+.+
T Consensus 4 fpgH-m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~-i~~~l-------~~kp~IiVlNK~DL~~~~~~~~~~~~~ 73 (276)
T TIGR03596 4 FPGH-MAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PM-IDEIR-------GNKPRLIVLNKADLADPAVTKQWLKYF 73 (276)
T ss_pred ChHH-HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hh-HHHHH-------CCCCEEEEEEccccCCHHHHHHHHHHH
Confidence 3444 33333334668899999999999988755332 11 12221 267999999999996532221122222
Q ss_pred HHHhCCCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 420 TQELGIEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 420 ~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
+..+. +++.+||++ .|++++.+.|.+.+.
T Consensus 74 -~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 74 -EEKGI-KALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred -HHcCC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 23343 379999999 999999999988763
No 358
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.19 E-value=1.4e-05 Score=78.06 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=71.2
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCCCCCC---C-C----CccceEEEEEEEcC-CCc-EEEEEEecCChh---------
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPFSENY---A-P----TTGEQYAVNVVDQP-GGN-KKTLILQEIPEE--------- 344 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~~~~~---~-~----T~~~~~~~~~v~~~-~~~-~~~li~d~~g~~--------- 344 (504)
.++|+|+|.+|+|||||+|.|++....... . + .....+......+. ++. ..+.++|++|-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 479999999999999999999987654331 0 0 01112222222222 132 234478888721
Q ss_pred ---------hHhhhhhhh-------hhcccccEEEEEEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 345 ---------GVKKILSNK-------EALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 345 ---------~~~~~~~~~-------~~~~~ad~iilV~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
.+....... ..=...|+++++++.+.. -+-.++ ..++.+ ...+++|-|..|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L-------s~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL-------SKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH-------TTTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh-------cccccEEeEEeccccc
Confidence 011110000 011356899999998753 222232 233333 3478999999999998
Q ss_pred CCccchH---HHHHHHHHhCCCCeEE
Q 010673 408 PYTMAVQ---DSARVTQELGIEPPIP 430 (504)
Q Consensus 408 ~~~~~~~---~~~~~~~~~~~~~~~~ 430 (504)
...+... .+.+-.+..++. ++.
T Consensus 156 t~~el~~~k~~i~~~l~~~~I~-~f~ 180 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEENNIK-IFD 180 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHTT---S--
T ss_pred CHHHHHHHHHHHHHHHHHcCce-eec
Confidence 8665533 445555677776 444
No 359
>PTZ00183 centrin; Provisional
Probab=98.17 E-value=6.8e-06 Score=73.10 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=76.6
Q ss_pred HHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCchhH
Q 010673 58 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT 137 (504)
Q Consensus 58 ~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e~~ 137 (504)
.+..+|..+|.|+||.|+.+|+...+.........+++++.+++.++.+ ++|.|+.++|.............+++
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-----~~G~i~~~e~~~~l~~~~~~l~~~~~ 128 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-----KTGKISLKNLKRVAKELGETITDEEL 128 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-----CCCcCcHHHHHHHHHHhCCCCCHHHH
Confidence 5778999999999999999999887665556667788899999888776 46669999998776644333455789
Q ss_pred HHHHHhhcCCCCccccCCCC
Q 010673 138 WAVLRKFGYGDDLELRDDFL 157 (504)
Q Consensus 138 ~~~~~~f~~d~~~~i~~~~l 157 (504)
..+|..||.|++|.|+.+++
T Consensus 129 ~~~~~~~d~~~~g~i~~~ef 148 (158)
T PTZ00183 129 QEMIDEADRNGDGEISEEEF 148 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHH
Confidence 99999999999999887655
No 360
>PRK13796 GTPase YqeH; Provisional
Probab=98.17 E-value=9.8e-06 Score=82.42 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=76.7
Q ss_pred hhhccccc-EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH----HHHHHHHHhCCC-
Q 010673 353 KEALASCD-VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ----DSARVTQELGIE- 426 (504)
Q Consensus 353 ~~~~~~ad-~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~- 426 (504)
.+.+..+| +|++|+|+.+.. ..|...+.+. ..+.|+++|+||+|+.......+ ....+++.+++.
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~----~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRF----VGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHhhcccCcEEEEEEECccCC-----CchhHHHHHH----hCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 44556666 999999998753 2244444443 23789999999999975433222 334456667763
Q ss_pred -CeEEEeccc-cCHHHHHHHHHHHHhCCCCCCCCcccccchhhHHhhhcc
Q 010673 427 -PPIPVSMKS-KDLNNVFSRIIWAAEHPHLNIPETETGRNRKRYRHLVNS 474 (504)
Q Consensus 427 -~~~~vSak~-~gi~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 474 (504)
.++.+||++ .|++++++.|.+.........-+..+...+...++++++
T Consensus 134 ~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 134 VDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhh
Confidence 479999999 999999999988754444444555566666667777653
No 361
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.16 E-value=6.4e-07 Score=67.28 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 137 TWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 137 ~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
+.++|+.||.|++|.|+.++| . .+.. .+. ..+.... +.+..+|+.+|.|+||.|+++||..+|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRR-ALKH-LGR--DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHH-HHHH-TTS--HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHH-HHHH-hcc--cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678999999999999999998 5 3210 000 1112333 778888999999999999999998875
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.16 E-value=7.7e-05 Score=71.44 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHH-------HhC-CCC
Q 010673 356 LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-------ELG-IEP 427 (504)
Q Consensus 356 ~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~-------~~~-~~~ 427 (504)
..-+|.+++|.=..-.+..+-++.=+-++ -=++|.||.|.........+.....+ ..+ .|+
T Consensus 162 ~~~aDt~~~v~~pg~GD~~Q~iK~GimEi-----------aDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 162 ANMADTFLVVMIPGAGDDLQGIKAGIMEI-----------ADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred hhhcceEEEEecCCCCcHHHHHHhhhhhh-----------hheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 35678888877655555555443333222 33899999996543221111111111 111 236
Q ss_pred eEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 428 PIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 428 ~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
.+.+||.+ +|+++|++.|.+....
T Consensus 231 v~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 231 VVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred eeEeeeccCCCHHHHHHHHHHHHHH
Confidence 79999999 9999999999987643
No 363
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.16 E-value=1.7e-06 Score=53.17 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=25.0
Q ss_pred HHHHhHhhhcCCCCCccCHHHHHHHHHH
Q 010673 58 ALKRIFIICDHDMDGALNDAELNEFQVK 85 (504)
Q Consensus 58 ~l~~~F~~~D~d~dG~l~~~El~~~~~~ 85 (504)
+++++|+.||+|+||+||.+|+...+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999887653
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.16 E-value=7.1e-06 Score=74.30 Aligned_cols=92 Identities=21% Similarity=0.099 Sum_probs=61.1
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE 426 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 426 (504)
+.+.+....+.+||++++|+|++++..... ..+... ..+.|+++|.||+|+.......... ++.+..+.
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~--------~~~k~~ilVlNK~Dl~~~~~~~~~~-~~~~~~~~- 76 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI--------LGNKPRIIVLNKADLADPKKTKKWL-KYFESKGE- 76 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH--------hcCCCEEEEEehhhcCChHHHHHHH-HHHHhcCC-
Confidence 344444678899999999999988754322 112221 2267999999999996532211111 22222232
Q ss_pred CeEEEeccc-cCHHHHHHHHHHHH
Q 010673 427 PPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 427 ~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
.++.+||++ .|++++.+.+...+
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHH
Confidence 479999999 99999999998875
No 365
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.15 E-value=1.3e-05 Score=72.70 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=77.8
Q ss_pred cccc-cCcchHH-------HHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCC
Q 010673 44 FDHD-EQTLKPR-------CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLG 115 (504)
Q Consensus 44 ~~~~-~~~l~~~-------~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~ 115 (504)
|+.. .+.+..+ .++..+.+|+-||+|+.|.|+..||...+. .+|..|+++-++-+++..+.. .++-
T Consensus 103 fd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~-~~Gy~Lspq~~~~lv~kyd~~-----~~g~ 176 (221)
T KOG0037|consen 103 FDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALT-QLGYRLSPQFYNLLVRKYDRF-----GGGR 176 (221)
T ss_pred hcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHH-HcCcCCCHHHHHHHHHHhccc-----cCCc
Confidence 4444 4556544 457789999999999999999999999977 679999999999999888654 2555
Q ss_pred CCHHhHHHHHHHHHhcCCchhHHHHHHhhcCCCCcccc
Q 010673 116 LTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELR 153 (504)
Q Consensus 116 i~~~~Fl~l~~~~~~~~~~e~~~~~~~~f~~d~~~~i~ 153 (504)
|.|++|+.+... ...+-++||.+|.+-+|.|+
T Consensus 177 i~FD~FI~ccv~------L~~lt~~Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 177 IDFDDFIQCCVV------LQRLTEAFRRRDTAQQGSIT 208 (221)
T ss_pred eeHHHHHHHHHH------HHHHHHHHHHhccccceeEE
Confidence 999999966432 22577899999998888775
No 366
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.14 E-value=1.1e-06 Score=69.95 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=51.5
Q ss_pred hhHHHHHHhhcC-CCCccccCCCC-CCCCCCCCCCccccChhHH--HHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 ETTWAVLRKFGY-GDDLELRDDFL-PVPTKLSPDQSVELASEAV--EFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e~~~~~~~~f~~-d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~--~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
.++..+|+.||. |++|+|+.++| . .+.. +|+.... .++.+||+..|.|+||.|+|+||..++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~-ll~~------elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQE-LLTQ------QLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHH-HHHH------HhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 468999999999 99999999999 5 3311 1433222 67999999999999999999999887763
No 367
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.4e-05 Score=83.11 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=79.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCcc---------------ceEEEE--EEEc--CCCcEE-EEEEec
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG---------------EQYAVN--VVDQ--PGGNKK-TLILQE 340 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~---------------~~~~~~--~v~~--~~~~~~-~li~d~ 340 (504)
.....+|.++|.-..|||+|+..|..+.....+..+.. ..+... ++-. ..++.+ ..++|+
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 45677899999999999999999997765332211110 011111 1111 113333 447899
Q ss_pred CChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 341 IPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
+|+-.+..-. ...++.+|++++|+|+.+.-.+.. +.+++...++ +.|+++|.||+|..
T Consensus 205 PGHVnF~DE~--ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq~------~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDET--TASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQN------RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHH--HHHhhhcceEEEEEEcccCceeeH-HHHHHHHHhc------cCcEEEEEehhHHH
Confidence 9986664332 457889999999999998877765 5666666544 89999999999963
No 368
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.13 E-value=4.7e-06 Score=75.68 Aligned_cols=147 Identities=23% Similarity=0.254 Sum_probs=103.6
Q ss_pred CccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCchh-HHHHHHhhcCCCCc
Q 010673 72 GALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET-TWAVLRKFGYGDDL 150 (504)
Q Consensus 72 G~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e~-~~~~~~~f~~d~~~ 150 (504)
..++.+.+..... -...++.||+.+-+....+|| +|.++.++|..+.+.+...|..+. ...+|+.||.|++|
T Consensus 7 ~~~~~~~~e~l~~---~t~f~~~ei~~~Yr~Fk~~cP----~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg 79 (193)
T KOG0044|consen 7 SKLQPESLEQLVQ---QTKFSKKEIQQWYRGFKNECP----SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDG 79 (193)
T ss_pred ccCCcHHHHHHHH---hcCCCHHHHHHHHHHhcccCC----CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCC
Confidence 3455555544433 568899999999999988886 456999999999999888777765 67799999999999
Q ss_pred cccCCCC-CCCCCCCCCCccccChhH--HHHHHHhhhhhcCCCCCCCCHHHHhhhhcc----CCC--CC---CCCC----
Q 010673 151 ELRDDFL-PVPTKLSPDQSVELASEA--VEFLRGIFGLYDIDNDGAVRPAELEDLFLT----APE--SP---WDEA---- 214 (504)
Q Consensus 151 ~i~~~~l-~~~~~~~~~~~~~l~~~~--~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~----~p~--~p---~~~~---- 214 (504)
.|+..++ - .+ .+...+ .+.+.=+|+.+|.|+||.|+.+|+-++... .+. .| -...
T Consensus 80 ~i~F~Efi~-al--------s~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~ 150 (193)
T KOG0044|consen 80 TIDFLEFIC-AL--------SLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVD 150 (193)
T ss_pred CcCHHHHHH-HH--------HHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHH
Confidence 9998776 4 22 111222 266777899999999999999998666542 222 11 0000
Q ss_pred ccccccccccCCcccHHHHH
Q 010673 215 PYKDAAETTALGNLTLKGFV 234 (504)
Q Consensus 215 ~~~~~~~~~~~g~i~~~~~l 234 (504)
........+..|.+|+..|+
T Consensus 151 ~if~k~D~n~Dg~lT~eef~ 170 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFI 170 (193)
T ss_pred HHHHHcCCCCCCcccHHHHH
Confidence 11233456677888887774
No 369
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.11 E-value=1.1e-05 Score=67.41 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=57.2
Q ss_pred cCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHH
Q 010673 48 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 125 (504)
Q Consensus 48 ~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~ 125 (504)
+..+.+.++.+++-+|..+|.|+||+||.+||..+. ..+.+..+..+++..|.+ ++|.||+++|....
T Consensus 39 ~~~~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n-----~Dg~IS~~Ef~~cl 106 (116)
T cd00252 39 KKSLYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLD-----KDGSISLDEWCYCF 106 (116)
T ss_pred hhhhhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCC-----CCCCCCHHHHHHHH
Confidence 445578899999999999999999999999998763 445678889999999877 56779999998654
No 370
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.08 E-value=7.8e-06 Score=76.99 Aligned_cols=153 Identities=17% Similarity=0.073 Sum_probs=86.4
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC-CCCccceEEEEEEEcCCCcEEEEEEecCCh----------hhHhhhh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKIL 350 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~-~~T~~~~~~~~~v~~~~~~~~~li~d~~g~----------~~~~~~~ 350 (504)
++.+.++++|.+|||||||+|.++........ .++.+.+...+.+.+. ....++|-+|- .....+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 55688999999999999999999987654333 3355544444444443 23334555551 1111221
Q ss_pred hhhhhccc---ccEEEEEEeCCCccc--HHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc------hHH---H
Q 010673 351 SNKEALAS---CDVTIFVYDSSDEYS--WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA------VQD---S 416 (504)
Q Consensus 351 ~~~~~~~~---ad~iilV~D~s~~~s--~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~------~~~---~ 416 (504)
..|+.+ -=-+++.+|++.+-. -.....| +.++ ++|+.+|.||||....... ... .
T Consensus 211 --~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~---~ge~------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 211 --KSYLLERENLVRVFLLVDASVPIQPTDNPEIAW---LGEN------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred --HHHHHhhhhhheeeeeeeccCCCCCCChHHHHH---Hhhc------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 222222 224566677765421 1222333 3333 8999999999997643321 110 1
Q ss_pred HHHHHHh--CCCCeEEEeccc-cCHHHHHHHHHHH
Q 010673 417 ARVTQEL--GIEPPIPVSMKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 417 ~~~~~~~--~~~~~~~vSak~-~gi~el~~~l~~~ 448 (504)
..+.+.. ..++++.+|+.+ .|+++|+-.|.+.
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 1111110 012477899999 9999988777654
No 371
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.07 E-value=1.7e-05 Score=63.16 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=61.1
Q ss_pred HHHHHHHHHhHhhhcCC--CCCccCHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQ----PAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~d--~dG~l~~~El~~~~~~~~g~~~~----~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
++.+..+.++|.-|+.. ++|+|+.+||..++.+.+|..++ +++++.|++.++.+ ++|.|+|++|+.++.
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-----~dG~I~f~eF~~~~~ 78 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-----QDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-----CCCcCcHHHHHHHHH
Confidence 56788899999999976 47999999999999878888888 99999999999776 466799999998775
Q ss_pred HH
Q 010673 127 LF 128 (504)
Q Consensus 127 ~~ 128 (504)
..
T Consensus 79 ~~ 80 (88)
T cd05030 79 KV 80 (88)
T ss_pred HH
Confidence 43
No 372
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.06 E-value=4e-06 Score=52.65 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=25.7
Q ss_pred HHHHhHhhhcCCCCCccCHHHHHHHHHHHcC
Q 010673 58 ALKRIFIICDHDMDGALNDAELNEFQVKCFN 88 (504)
Q Consensus 58 ~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g 88 (504)
+|+++|+.||+|+||+|+.+||..++++++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 4789999999999999999999988774333
No 373
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.01 E-value=1.5e-05 Score=72.09 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=38.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
....++|+++|.||||||||+|+|++.....+. +++|. ....+.++ ..+.++|++|
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~---~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTK---SMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEc---ceEEEEeC---CCEEEEECcC
Confidence 455689999999999999999999997764332 23333 22334443 2356778876
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.00 E-value=3e-05 Score=72.15 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=94.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCC-CCCCccceEEEEEEEcCCCcEEEEEEecCChhhH----hh-hhhhhhhccc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV----KK-ILSNKEALAS 358 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~-~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~----~~-~~~~~~~~~~ 358 (504)
.+|.++|.|.+|||||+..+++...... +..|+-.++. ..+.+. | .++.+.|-+|.-.- .+ -.+.....+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vp-G~~~y~-g-aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVP-GVIRYK-G-AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEec-ceEecc-c-cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 4899999999999999999998654322 2333332111 112233 2 34555555543110 00 0111345688
Q ss_pred ccEEEEEEeCCCcccHHHH-----------------------------------------HHHHHHHHHhcc--------
Q 010673 359 CDVTIFVYDSSDEYSWKRT-----------------------------------------KELLVEVARLGE-------- 389 (504)
Q Consensus 359 ad~iilV~D~s~~~s~~~~-----------------------------------------~~~~~~l~~~~~-------- 389 (504)
|+++++|.|+-.|-+...+ ...+.+.+.+..
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 9999999999876543322 111111111100
Q ss_pred ----------CCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHHHHHHHHH
Q 010673 390 ----------DSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVFSRIIWAA 449 (504)
Q Consensus 390 ----------~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~ 449 (504)
-...-+|++.+.||+|-.. ++++--.+.++..+++||-+ .|++++++.+.+.+
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsIS-------iEELdii~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSIS-------IEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceee-------eeccceeeeccceeecccccccchHHHHHHHhhcc
Confidence 0012469999999999776 33344456667789999999 99999999998876
No 375
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=7.1e-05 Score=81.33 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=81.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCC-----CCC-----------CccceEE--EEEEEcCCCcEEEEEEecCC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-----YAP-----------TTGEQYA--VNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~-----~~~-----------T~~~~~~--~~~v~~~~~~~~~li~d~~g 342 (504)
..+.-+|.|+|+-.+|||||..+++-..-... ..+ ..+.++. ..++.+. +...+.++|++|
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~-~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK-GDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-CceEEEEeCCCC
Confidence 34566899999999999999999984322111 111 0111222 2234444 247888999999
Q ss_pred hhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 343 EEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 343 ~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
+-.+..-. ...++-+|++++|+|+...-..+. +..+++..++ ++|.+++.||+|.....
T Consensus 86 HVDFt~EV--~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~~------~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFTIEV--ERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADKY------GVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccHHHH--HHHHHhhcceEEEEECCCCeeecH-HHHHHHHhhc------CCCeEEEEECccccccC
Confidence 97764433 457789999999999988755444 4444555544 89999999999987643
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.99 E-value=2.3e-05 Score=69.82 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=36.8
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
..++|+++|.||||||||+|+|.+.....+. ++|+. ....+..+. ...++|++|
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~---~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETK---VWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeE---eEEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999987654332 23333 233344442 256788887
No 377
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=7.5e-05 Score=74.64 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=93.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCC----------------------CccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAP----------------------TTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~----------------------T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
..+|+-.|.+|||||-.+|+--.-.+...+ .+..+.++-.+++. ...+.++|++|+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~--~~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA--DCLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--CeEEeccCCCCc
Confidence 489999999999999999873221111101 11122233344444 367788999999
Q ss_pred hhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHh
Q 010673 344 EGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQEL 423 (504)
Q Consensus 344 ~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 423 (504)
+.+..= +.+.+..+|.++.|+|+...-.-+. .++++-.+ ..++||+-..||.|.... ...+.+.++.+.+
T Consensus 92 eDFSED--TYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr------lR~iPI~TFiNKlDR~~r-dP~ELLdEiE~~L 161 (528)
T COG4108 92 EDFSED--TYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR------LRDIPIFTFINKLDREGR-DPLELLDEIEEEL 161 (528)
T ss_pred cccchh--HHHHHHhhheeeEEEecccCccHHH-HHHHHHHh------hcCCceEEEeeccccccC-ChHHHHHHHHHHh
Confidence 877432 2456778999999999987643333 34444333 459999999999998763 3455677777778
Q ss_pred CCCC---eEEEe-ccc-cCHHHHHHH
Q 010673 424 GIEP---PIPVS-MKS-KDLNNVFSR 444 (504)
Q Consensus 424 ~~~~---~~~vS-ak~-~gi~el~~~ 444 (504)
++.. .+++. .++ .|+-.+...
T Consensus 162 ~i~~~PitWPIG~gk~F~Gvy~l~~~ 187 (528)
T COG4108 162 GIQCAPITWPIGMGKDFKGVYHLYND 187 (528)
T ss_pred CcceecccccccCCcccceeeeeccC
Confidence 7651 23443 233 555444443
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.97 E-value=1.6e-05 Score=78.22 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=64.8
Q ss_pred ecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHH
Q 010673 339 QEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSAR 418 (504)
Q Consensus 339 d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~ 418 (504)
|-+|+ ....+......+..+|+|++|+|+.++.+... .++..+. .+.|+++|.||+|+.+........+.
T Consensus 6 wfpgH-m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-------~~kp~iiVlNK~DL~~~~~~~~~~~~ 75 (287)
T PRK09563 6 WFPGH-MAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-------GNKPRLLILNKSDLADPEVTKKWIEY 75 (287)
T ss_pred CcHHH-HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-------CCCCEEEEEEchhcCCHHHHHHHHHH
Confidence 34555 33333334668899999999999988755332 1222222 26899999999999653211112222
Q ss_pred HHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHh
Q 010673 419 VTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAE 450 (504)
Q Consensus 419 ~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~ 450 (504)
+ +..+.+ ++.+||++ .|++++.+.|.+.+.
T Consensus 76 ~-~~~~~~-vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 76 F-EEQGIK-ALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred H-HHcCCe-EEEEECCCcccHHHHHHHHHHHHH
Confidence 2 233443 79999999 999999999888763
No 379
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.96 E-value=2.1e-05 Score=68.82 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=52.1
Q ss_pred hhhcccccEEEEEEeCCCcccHH--HHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEE
Q 010673 353 KEALASCDVTIFVYDSSDEYSWK--RTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~--~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 430 (504)
...+..+|++++|+|+.++.+.. .+.+++... ..++|+++|+||+|+..+.. .....+..+..+.. +++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------~~~k~~iivlNK~DL~~~~~-~~~~~~~~~~~~~~-ii~ 76 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------DPRKKNILLLNKADLLTEEQ-RKAWAEYFKKEGIV-VVF 76 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------cCCCcEEEEEechhcCCHHH-HHHHHHHHHhcCCe-EEE
Confidence 45778999999999999886644 334444322 13789999999999965332 22333444555554 899
Q ss_pred Eeccc-cC
Q 010673 431 VSMKS-KD 437 (504)
Q Consensus 431 vSak~-~g 437 (504)
+||++ .+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998 64
No 380
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=7.6e-05 Score=76.35 Aligned_cols=140 Identities=17% Similarity=0.238 Sum_probs=84.3
Q ss_pred cccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhccc
Q 010673 279 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS 358 (504)
Q Consensus 279 ~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ 358 (504)
.....++-|+|+|+||+|||||++.|+..-.......-++. +.+-.|+.+.+.+-+.+. ....+ ....+-
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP------iTvvsgK~RRiTflEcp~-Dl~~m---iDvaKI 133 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP------ITVVSGKTRRITFLECPS-DLHQM---IDVAKI 133 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc------eEEeecceeEEEEEeChH-HHHHH---HhHHHh
Confidence 34567888999999999999999998865332222222222 112125555554444544 34444 345678
Q ss_pred ccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCCCccchHHH------HHHHHHhCCCCeEEE
Q 010673 359 CDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKPYTMAVQDS------ARVTQELGIEPPIPV 431 (504)
Q Consensus 359 ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~v 431 (504)
||+|++++|.+-.-..+. .++++.+..+ +.| ++-|++..|+-......... +-|..-+.-...|.+
T Consensus 134 aDLVlLlIdgnfGfEMET-mEFLnil~~H------GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFyl 206 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMET-MEFLNILISH------GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYL 206 (1077)
T ss_pred hheeEEEeccccCceehH-HHHHHHHhhc------CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEe
Confidence 999999999876533333 4555655544 444 67899999997754432211 224444444447778
Q ss_pred eccc
Q 010673 432 SMKS 435 (504)
Q Consensus 432 Sak~ 435 (504)
|-..
T Consensus 207 sgV~ 210 (1077)
T COG5192 207 SGVE 210 (1077)
T ss_pred cccc
Confidence 7543
No 381
>PTZ00184 calmodulin; Provisional
Probab=97.95 E-value=2.9e-05 Score=68.07 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=73.5
Q ss_pred HHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCchh
Q 010673 57 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET 136 (504)
Q Consensus 57 ~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e~ 136 (504)
..++++|+.+|.|++|.|+.+|+..++...+......+.+..++...|.+ ++|.|+.++|..+....-.....++
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-----~~g~i~~~e~~~~l~~~~~~~~~~~ 121 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-----GNGFISAAELRHVMTNLGEKLTDEE 121 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-----CCCeEeHHHHHHHHHHHCCCCCHHH
Confidence 36788999999999999999999887665555556677788888888765 4556999999876655322234577
Q ss_pred HHHHHHhhcCCCCccccCCCC
Q 010673 137 TWAVLRKFGYGDDLELRDDFL 157 (504)
Q Consensus 137 ~~~~~~~f~~d~~~~i~~~~l 157 (504)
++.+|+.+|.|++|.|+.+++
T Consensus 122 ~~~~~~~~d~~~~g~i~~~ef 142 (149)
T PTZ00184 122 VDEMIREADVDGDGQINYEEF 142 (149)
T ss_pred HHHHHHhcCCCCCCcCcHHHH
Confidence 999999999999998886554
No 382
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.93 E-value=3.1e-05 Score=68.89 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHH
Q 010673 50 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL 127 (504)
Q Consensus 50 ~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~ 127 (504)
.++..+++.+.-+|+.||.|.||+|+--||..+|.+ +|.|=|-=-+..|+..|+.| .++.|+|-+|+-+...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEK-LgapQTHL~lK~mikeVded-----~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEK-LGAPQTHLGLKNMIKEVDED-----FDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH-hCCchhhHHHHHHHHHhhcc-----cccchhHHHHHHHHHH
Confidence 567889999999999999999999999999988886 59999999999999999887 5777999999977654
No 383
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.90 E-value=3e-05 Score=55.54 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCCccCHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 70 MDGALNDAELNEFQVKCFNAP-LQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 70 ~dG~l~~~El~~~~~~~~g~~-~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
.+|.|+.+||..++ ..+|.+ ++++++..|+..+|.+ ++|.|++++|+.++.
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~-----~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTD-----GDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTS-----SSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccC-----CCCCCCHHHHHHHHH
Confidence 47999999999998 678999 9999999999999988 577799999998765
No 384
>PLN02964 phosphatidylserine decarboxylase
Probab=97.89 E-value=8.4e-06 Score=87.16 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=98.1
Q ss_pred cCCCcccccccCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCC
Q 010673 38 HPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLT 117 (504)
Q Consensus 38 ~p~~pl~~~~~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 117 (504)
+-..|.|+....-+-...-..+. -|+.+|+| .++..+|.+.+.-. =..++.+|++++.+..+.-++++ +|.+
T Consensus 89 ~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~s~n~lv~~~e~~-~t~f~~kqi~elkeaF~lfD~dg--dG~i- 160 (644)
T PLN02964 89 STDKPVWNSEKKLLLEKNGPHLA-RISVFETN---RLSKNTLVGYCELD-LFDFVTQEPESACESFDLLDPSS--SNKV- 160 (644)
T ss_pred ccCCcccchhhceEeccCCcceE-EEEEEecC---CCCHHHhhhheeec-HhhccHHHHHHHHHHHHHHCCCC--CCcC-
Confidence 45677888775544333333343 68888876 57777776553210 03677788888888877765543 3334
Q ss_pred HHhHHHHHHHHH-hcCCchh---HHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhH-HHHHHHhhhhhcCCCC
Q 010673 118 LSGFLFLHALFI-EKGRLET---TWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEA-VEFLRGIFGLYDIDND 191 (504)
Q Consensus 118 ~~~Fl~l~~~~~-~~~~~e~---~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~-~~~l~~lf~~~D~d~d 191 (504)
+. .+++..- .....++ +.++|+.+|.|++|.|+.+++ . .+. .++... .+++.++|+.+|+|+|
T Consensus 161 Lg---~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~-lL~-------~lg~~~seEEL~eaFk~fDkDgd 229 (644)
T PLN02964 161 VG---SIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSD-LIK-------AFGNLVAANKKEELFKAADLNGD 229 (644)
T ss_pred HH---HHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHH-HHH-------HhccCCCHHHHHHHHHHhCCCCC
Confidence 22 2222211 1122233 689999999999999998888 6 331 233222 3679999999999999
Q ss_pred CCCCHHHHhhhhccC
Q 010673 192 GAVRPAELEDLFLTA 206 (504)
Q Consensus 192 G~l~~~e~~~l~~~~ 206 (504)
|.|+++||.+++...
T Consensus 230 G~Is~dEL~~vL~~~ 244 (644)
T PLN02964 230 GVVTIDELAALLALQ 244 (644)
T ss_pred CcCCHHHHHHHHHhc
Confidence 999999999998873
No 385
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.88 E-value=5.6e-06 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=25.0
Q ss_pred HHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 178 FLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 178 ~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
++.++|+.+|+|+||.|+++||..++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999875
No 386
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.87 E-value=5.4e-05 Score=55.03 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=52.4
Q ss_pred HHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHH
Q 010673 59 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL 124 (504)
Q Consensus 59 l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l 124 (504)
++.+|..+|.|++|.|+.+|+..++. .++.+.+.+++..++...+.+ +++.|++++|..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~-~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK-SLGEGLSEEEIDEMIREVDKD-----GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCC-----CCCeEeHHHHHHH
Confidence 57899999999999999999999977 468999999999999998765 3566999999764
No 387
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.81 E-value=0.00053 Score=67.58 Aligned_cols=137 Identities=10% Similarity=0.133 Sum_probs=78.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC----------CCCCccceEEEEEEEcCCCcEEEEEEecCChhh------
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN----------YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------ 345 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~----------~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~------ 345 (504)
.-.++|+++|++|.|||||+|.|++...... ..+|+........+.=++-...+.++|++|--.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999998744222 112333222222222221222344677776411
Q ss_pred ------------Hhhhhhh-h-------hhcccccEEEEEEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECC
Q 010673 346 ------------VKKILSN-K-------EALASCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 404 (504)
Q Consensus 346 ------------~~~~~~~-~-------~~~~~ad~iilV~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~ 404 (504)
+...... . ..=...|+++|.+-.+.. -+-.++ ..++.+ ...+.+|-|.-|+
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI-e~Mk~l-------s~~vNlIPVI~Ka 172 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI-EAMKRL-------SKRVNLIPVIAKA 172 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH-HHHHHH-------hcccCeeeeeecc
Confidence 1111000 0 011346899999886542 222222 233333 3367889999999
Q ss_pred CCCCCccchH---HHHHHHHHhCCC
Q 010673 405 DLKPYTMAVQ---DSARVTQELGIE 426 (504)
Q Consensus 405 Dl~~~~~~~~---~~~~~~~~~~~~ 426 (504)
|.....+... .+.+....++++
T Consensus 173 D~lT~~El~~~K~~I~~~i~~~nI~ 197 (373)
T COG5019 173 DTLTDDELAEFKERIREDLEQYNIP 197 (373)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCc
Confidence 9987665533 566666777887
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.80 E-value=8.5e-05 Score=73.15 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=40.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
....++|+|+|.||||||||+|+|.+.....+. ++.+.+.....+.++ ..+.++|++|-
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~---~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLG---KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeC---CcEEEEECCCc
Confidence 456789999999999999999999998764332 222222233345554 23568898887
No 389
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=7.3e-05 Score=74.62 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=44.2
Q ss_pred hcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 278 QQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 278 ~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
........++.|+|.||||||||||+|++.....+. +..+.+-....+.+..+ ..++|++|.
T Consensus 126 ~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence 334556688999999999999999999999874433 23343344555666633 667888886
No 390
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00024 Score=73.64 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=91.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCC--------------------CCCC----CCC-----ccceEEEEEEEcCCC
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPF--------------------SENY----APT-----TGEQYAVNVVDQPGG 331 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~--------------------~~~~----~~T-----~~~~~~~~~v~~~~~ 331 (504)
....+.++|+|...+|||||+-+++..-- +-.| ..| .+.+..+....++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 45778999999999999999999884210 0000 001 111222223333323
Q ss_pred cEEEEEEecCChhhH-hhhhhhhhhcccccEEEEEEeCCCcc---cHH---HHHHHHHHHHHhccCCCCCCcEEEEEECC
Q 010673 332 NKKTLILQEIPEEGV-KKILSNKEALASCDVTIFVYDSSDEY---SWK---RTKELLVEVARLGEDSGYGVPCLLIASKD 404 (504)
Q Consensus 332 ~~~~li~d~~g~~~~-~~~~~~~~~~~~ad~iilV~D~s~~~---s~~---~~~~~~~~l~~~~~~~~~~~piilV~NK~ 404 (504)
...+.++|.+|+..+ ..+ ..-...||+.++|+|++..+ .|+ ...+....+.. ..-.-++|+.||.
T Consensus 254 ~~~~tliDaPGhkdFi~nm---i~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-----Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNM---ISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-----LGISQLIVAINKM 325 (603)
T ss_pred ceeEEEecCCCccccchhh---hccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-----cCcceEEEEeecc
Confidence 456667888886555 333 34567899999999997642 121 12333333332 2245689999999
Q ss_pred CCCCCccc-----hHHHHHHH-HHhCCC----CeEEEeccc-cCHHHH
Q 010673 405 DLKPYTMA-----VQDSARVT-QELGIE----PPIPVSMKS-KDLNNV 441 (504)
Q Consensus 405 Dl~~~~~~-----~~~~~~~~-~~~~~~----~~~~vSak~-~gi~el 441 (504)
|+.+=.+. ...+..|. +..|+. .+++||+.+ +|+-..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99863332 11444555 555554 489999999 886543
No 391
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.76 E-value=2e-05 Score=46.59 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.8
Q ss_pred HHHhHhhhcCCCCCccCHHHHHHH
Q 010673 59 LKRIFIICDHDMDGALNDAELNEF 82 (504)
Q Consensus 59 l~~~F~~~D~d~dG~l~~~El~~~ 82 (504)
|+.+|..+|.|+||.||.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 578999999999999999999765
No 392
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.76 E-value=0.00011 Score=66.90 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=52.5
Q ss_pred HHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 57 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ--PAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 57 ~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~--~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
..++=||++||.|+||.|+.+||...+...+|...+ ++.++.|.+..-..- |--++|.|+|+||..++.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~-D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEA-DTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHh-CCCCCCcCcHHHHHHHHH
Confidence 467779999999999999999999999999998888 666666555432221 111466699999986654
No 393
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.75 E-value=5.3e-05 Score=66.23 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=37.2
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
+++++|.+|||||||+|++++........ +.+.+.....+.++ + ...+||++|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~-~--~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLT-P--TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeC-C--CEEEEECCCc
Confidence 89999999999999999999887643321 12222233345555 2 3578888875
No 394
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.74 E-value=1.1e-05 Score=64.11 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=49.8
Q ss_pred hhHHHHHHhhc-CCCCc-cccCCCC-CCCCCCCCCCccccChhHH-HHHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 135 ETTWAVLRKFG-YGDDL-ELRDDFL-PVPTKLSPDQSVELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 135 e~~~~~~~~f~-~d~~~-~i~~~~l-~~~~~~~~~~~~~l~~~~~-~~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
.++.++|+.|| .|++| .|+.++| . .+...... -++.... +.+.++++..|.|+||+|+++||..+..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~-ll~~~~~~--~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKE-LINNELSH--FLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHH-HHHHHhHH--HhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 36899999998 89999 5999999 6 33110000 0333223 6699999999999999999999988765
No 395
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.72 E-value=0.00037 Score=68.58 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=97.2
Q ss_pred hhcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCC--------------ccceEEEEEEEcCCCc----------
Q 010673 277 KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT--------------TGEQYAVNVVDQPGGN---------- 332 (504)
Q Consensus 277 ~~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T--------------~~~~~~~~~v~~~~~~---------- 332 (504)
+.+..+..+.|.+.|.-+.|||||+-.|+.+......-.| ....++...+-+++|+
T Consensus 110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 3344677889999999999999999999876653211000 0111222223333222
Q ss_pred -----------EEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEE
Q 010673 333 -----------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIA 401 (504)
Q Consensus 333 -----------~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~ 401 (504)
....++|+.|++.+-.-.-.--.-.+.|-.++++.+++.-+-.. ++-+--+... +.|+++|.
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a~------~lPviVvv 262 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALAM------ELPVIVVV 262 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhhh------cCCEEEEE
Confidence 23345788888765221100112367899999999988765433 2223323222 79999999
Q ss_pred ECCCCCCCccchH---HHHHHHHHhC------------------------CCCeEEEeccc-cCHHHHHHHHHH
Q 010673 402 SKDDLKPYTMAVQ---DSARVTQELG------------------------IEPPIPVSMKS-KDLNNVFSRIIW 447 (504)
Q Consensus 402 NK~Dl~~~~~~~~---~~~~~~~~~~------------------------~~~~~~vSak~-~gi~el~~~l~~ 447 (504)
+|+|+..+..... ++..+.+..+ .-|++.+|+.+ +|++-|.+.+..
T Consensus 263 TK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 263 TKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred EecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 9999987654432 2222222211 12579999999 998766555543
No 396
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.69 E-value=0.00013 Score=71.40 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=39.7
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--CCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY--APTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
...++|+|+|.||||||||+|+|.+.....+. +++|.. ...+.+. . .+.++|++|.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~---~~~~~~~-~--~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG---QQWIKLS-D--GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc---eEEEEeC-C--CEEEEECCCc
Confidence 45789999999999999999999987754332 233332 3345554 2 3568899887
No 397
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.68 E-value=0.00012 Score=73.40 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=51.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCC-CCCCCC-C-ccceEEEEEEEcCCCc---------------EEEEEEecCChhhH
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPF-SENYAP-T-TGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGV 346 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~-~~~~~~-T-~~~~~~~~~v~~~~~~---------------~~~li~d~~g~~~~ 346 (504)
+++.|+|.||||||||+|.|++... .....| | ... ....+.+++.. ..+.+.|-+|-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p--~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEP--NAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCC--ceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 6899999999999999999999886 433333 3 333 22334444221 12334454443110
Q ss_pred ----hhh-hhhhhhcccccEEEEEEeCC
Q 010673 347 ----KKI-LSNKEALASCDVTIFVYDSS 369 (504)
Q Consensus 347 ----~~~-~~~~~~~~~ad~iilV~D~s 369 (504)
.++ ..-...++.+|++++|+|+.
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 111 01145789999999999985
No 398
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.65 E-value=0.00012 Score=66.28 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=39.6
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
....++++++|.+|||||||+|++.+..+.... +..+.+.....+.++ ..+.++|++|-
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345689999999999999999999998764322 222222333334443 23568888874
No 399
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.63 E-value=2.1e-05 Score=63.56 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=50.0
Q ss_pred hhHHHHHHhhcC-CC-CccccCCCC-CCCCCCCCCCccccChhH-HHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 ETTWAVLRKFGY-GD-DLELRDDFL-PVPTKLSPDQSVELASEA-VEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e~~~~~~~~f~~-d~-~~~i~~~~l-~~~~~~~~~~~~~l~~~~-~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
..+|++|+.||. |+ +|.|+.++| . .+....+. .++... .+++.++|+.+|.|+||.|+++||..++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~-~l~~~~g~--~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKK-LMEKELSE--FLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHH-HHHHHhHH--HhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 469999999997 97 799999999 6 33110000 012121 277999999999999999999999988763
No 400
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.62 E-value=1.6e-05 Score=64.07 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=49.1
Q ss_pred hhHHHHHHhhc-CCCCc-cccCCCC-CCCCCCCCCCccccChh-HHHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 ETTWAVLRKFG-YGDDL-ELRDDFL-PVPTKLSPDQSVELASE-AVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e~~~~~~~~f~-~d~~~-~i~~~~l-~~~~~~~~~~~~~l~~~-~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
.++.++|+.|| .|++| .|+.++| . .+....+. .++.. ....+.+|++.+|.|+||.|+++||..++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~-ll~~~~~~--~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKE-LLQRELTD--FLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHH-HHHHHhHH--hcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 36788899998 78998 4999998 5 33110000 11111 2367999999999999999999999988764
No 401
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00097 Score=64.76 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=96.3
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcC----CCC--C-----CCCC---CccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLER----PFS--E-----NYAP---TTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~----~~~--~-----~~~~---T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.+.-++|.-+|.-.-|||||--+++.- ..+ . ...| ..+.+++...+++......+--.|.+|+..+
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 445578999999999999998887631 111 0 1111 3344455555666544456667889998666
Q ss_pred -hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH----HHHHHHH
Q 010673 347 -KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ----DSARVTQ 421 (504)
Q Consensus 347 -~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~ 421 (504)
..+. .-..+.|+.|+|+.++|..-.+. ++-+-..++. .-..+++..||.|+.++.+..+ +++++..
T Consensus 131 IKNMI---tGaaqMDGaILVVaatDG~MPQT-rEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs 201 (449)
T KOG0460|consen 131 IKNMI---TGAAQMDGAILVVAATDGPMPQT-REHLLLARQV-----GVKHIVVFINKVDLVDDPEMLELVEMEIRELLS 201 (449)
T ss_pred HHHhh---cCccccCceEEEEEcCCCCCcch-HHHHHHHHHc-----CCceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 4443 24467899999999999754443 2222222322 1245778899999996665533 8889999
Q ss_pred HhCCC----CeEEEeccc
Q 010673 422 ELGIE----PPIPVSMKS 435 (504)
Q Consensus 422 ~~~~~----~~~~vSak~ 435 (504)
.++++ |++.=||..
T Consensus 202 e~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALC 219 (449)
T ss_pred HcCCCCCCCCeeecchhh
Confidence 99987 678888876
No 402
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00052 Score=67.23 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=76.9
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCC---CCCccceEEEEEEE------cCCCc--------------------
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY---APTTGEQYAVNVVD------QPGGN-------------------- 332 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~---~~T~~~~~~~~~v~------~~~~~-------------------- 332 (504)
....-|+++|.-..||||+|+.|+..++.... .||+.. |... +. ++++.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~-Fi~v-M~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR-FIAV-MHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce-eEEE-EecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 45567999999999999999999999986432 344432 2111 10 11000
Q ss_pred -------------EEEEEEecCChhhHhh--hhh------h-hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccC
Q 010673 333 -------------KKTLILQEIPEEGVKK--ILS------N-KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGED 390 (504)
Q Consensus 333 -------------~~~li~d~~g~~~~~~--~~~------~-~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~ 390 (504)
..+.++|++|.-.-+. +.+ . .=+...+|.|+++||+..-+--++....+..++.+
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--- 210 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--- 210 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---
Confidence 1122466666411110 110 0 12457899999999987655445556677777644
Q ss_pred CCCCCcEEEEEECCCCCCCccchH
Q 010673 391 SGYGVPCLLIASKDDLKPYTMAVQ 414 (504)
Q Consensus 391 ~~~~~piilV~NK~Dl~~~~~~~~ 414 (504)
.-.+-+|.||+|.++..+...
T Consensus 211 ---EdkiRVVLNKADqVdtqqLmR 231 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVDTQQLMR 231 (532)
T ss_pred ---cceeEEEeccccccCHHHHHH
Confidence 556788999999998665433
No 403
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.52 E-value=0.00022 Score=70.74 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=93.9
Q ss_pred HHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH-H--------
Q 010673 57 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA-L-------- 127 (504)
Q Consensus 57 ~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~-~-------- 127 (504)
..|.+.|+++|.++.|+|+...-...+....|.+|+=--+. .....+..++.+.+..-+.... .
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~-------~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~ 536 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR-------PKLANGSDDGKVEYKSTLDNLDTEVILEEAGS 536 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh-------hhccCCCcCcceehHhHHHHhhhhhHHHHHHh
Confidence 46778999999999999999999999999999998854333 1212222344466655543221 1
Q ss_pred -HHhc-C-CchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChh-----HHHHHHHhhhhhcCCCCCCCCHHH
Q 010673 128 -FIEK-G-RLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASE-----AVEFLRGIFGLYDIDNDGAVRPAE 198 (504)
Q Consensus 128 -~~~~-~-~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~-----~~~~l~~lf~~~D~d~dG~l~~~e 198 (504)
.++. . +...+-.+|+..|.|++|.|+-+|+ . ..+ -++.. ....+.++-+..|-++||.|++.|
T Consensus 537 slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~-a~~-------l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNE 608 (631)
T KOG0377|consen 537 SLVETLYRNKSSLETIFNIIDADNSGEISLDEFRT-AWK-------LLSSHMNGAISDDEILELARSMDLNKDGKIDLNE 608 (631)
T ss_pred HHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHH-HHH-------HHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHH
Confidence 1110 0 1135778999999999999999888 5 321 11111 126788888889999999999999
Q ss_pred HhhhhccC
Q 010673 199 LEDLFLTA 206 (504)
Q Consensus 199 ~~~l~~~~ 206 (504)
|.+-|...
T Consensus 609 fLeAFrlv 616 (631)
T KOG0377|consen 609 FLEAFRLV 616 (631)
T ss_pred HHHHHhhh
Confidence 99999854
No 404
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0012 Score=69.76 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=34.9
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCc
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYT 410 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~ 410 (504)
.....++|++|+|..+.+..+... ..++....+ .+..|+++-||+|....+
T Consensus 227 d~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~------~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 227 DSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE------EKPNIFILNNKWDASASE 277 (749)
T ss_pred HHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc------cCCcEEEEechhhhhccc
Confidence 457789999999999877655444 445554442 245567778888987653
No 405
>PRK01889 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00045 Score=70.05 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=60.0
Q ss_pred hcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHH-HhCCCCeEEEec
Q 010673 355 ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQ-ELGIEPPIPVSM 433 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~vSa 433 (504)
...++|.+++|+++..+-....+..++..+... ++|.++|+||+||.++.. ...+.+.. ..+.+ ++.+|+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~------~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~-Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES------GAEPVIVLTKADLCEDAE--EKIAEVEALAPGVP-VLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc------CCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCc-EEEEEC
Confidence 357899999999997555555667777766644 788899999999976421 12222322 23444 899999
Q ss_pred cc-cCHHHHHHHHH
Q 010673 434 KS-KDLNNVFSRII 446 (504)
Q Consensus 434 k~-~gi~el~~~l~ 446 (504)
++ .|+++|...|.
T Consensus 180 ~~g~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDGEGLDVLAAWLS 193 (356)
T ss_pred CCCccHHHHHHHhh
Confidence 99 99999998874
No 406
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.49 E-value=0.00056 Score=64.75 Aligned_cols=91 Identities=26% Similarity=0.188 Sum_probs=55.8
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcC--CCCCCC--CCCccceEEEEEEEcC-CCcEEEEEEecCChhhHhh----hhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLER--PFSENY--APTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKK----ILS 351 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~--~~~~~~--~~T~~~~~~~~~v~~~-~~~~~~li~d~~g~~~~~~----~~~ 351 (504)
..+..-|+|+|++++|||+|+|+|++. .|.... .++|.. +........ ++...++++|+.|-..... ...
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g-i~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG-IWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc-eEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 456778999999999999999999998 665432 233332 222222221 1346788899988643211 111
Q ss_pred hhhhcc--cccEEEEEEeCCCcc
Q 010673 352 NKEALA--SCDVTIFVYDSSDEY 372 (504)
Q Consensus 352 ~~~~~~--~ad~iilV~D~s~~~ 372 (504)
....+. -+|++|+..+.....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcccH
Confidence 122333 388999988876543
No 407
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.46 E-value=0.00031 Score=62.42 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=38.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
...+++++|.+|+|||||+|+|.+.... .+.++.+.+.....+..+ ....+||++|
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 4578999999999999999999976533 233444443333334443 2466788887
No 408
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.46 E-value=0.00086 Score=75.37 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=104.2
Q ss_pred ccccCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCC--HH-----HHHHHHHHhhhhccCCcCCCCCC
Q 010673 45 DHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ--PA-----EIVGVKRVVQEKQHDGVNDLGLT 117 (504)
Q Consensus 45 ~~~~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~--~~-----e~~~~~~~~~~~~~~~~~~~~i~ 117 (504)
+....-.|+++.++|.-+|+.||+++.|.|+-.++..+++ .+|..++ ++ +++.+++.||.+ .+|-|+
T Consensus 2241 arn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLr-slgY~lpmvEe~~~~p~fe~~ld~vDP~-----r~G~Vs 2314 (2399)
T KOG0040|consen 2241 ARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLR-SLGYDLPMVEEGEPEPEFEEILDLVDPN-----RDGYVS 2314 (2399)
T ss_pred hhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHH-hcCCCCcccccCCCChhHHHHHHhcCCC-----CcCccc
Confidence 3445678999999999999999999999999999999977 6799873 44 799999999776 466699
Q ss_pred HHhHHHHHHHHHhc--CCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhhcCCC----
Q 010673 118 LSGFLFLHALFIEK--GRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLYDIDN---- 190 (504)
Q Consensus 118 ~~~Fl~l~~~~~~~--~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~---- 190 (504)
..+|+..|-..-.. -..+++-.+|+..+. +.-+++..++ . .|+++--+||..=++.+.-..
T Consensus 2315 l~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-----------~ltreqaefc~s~m~~~~e~~~~~s 2382 (2399)
T KOG0040|consen 2315 LQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ-----------NLTREQAEFCMSKMKPYAETSSGRS 2382 (2399)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh-----------cCCHHHHHHHHHHhhhhcccccCCC
Confidence 99998555322111 122589999999999 6777777666 4 566666677766556554333
Q ss_pred -CCCCCHHHHhhhhc
Q 010673 191 -DGAVRPAELEDLFL 204 (504)
Q Consensus 191 -dG~l~~~e~~~l~~ 204 (504)
-+.|.|.+|.+-|+
T Consensus 2383 ~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2383 DQVALDYKDFVNSLF 2397 (2399)
T ss_pred ccccccHHHHHHHHh
Confidence 34466767765443
No 409
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.45 E-value=5.3e-05 Score=56.72 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 138 WAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 138 ~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
+.+|+.+|.|++|.|+.+++ . .+. .++. ..+.+.++|+.+|.+++|.|+++||..+++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~-~l~-------~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARP-FLG-------KSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHH-HHH-------HcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999888 5 331 1121 2366889999999999999999999988864
No 410
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.45 E-value=0.00055 Score=61.07 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcCC
Q 010673 286 RCLLFGPQNAGKSALLNSFLERP 308 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~ 308 (504)
-++++|..|+|||||+++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 36799999999999999998753
No 411
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.44 E-value=0.00011 Score=61.42 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=49.3
Q ss_pred hhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCCCHHHHhhhhccCC
Q 010673 135 ETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP 207 (504)
Q Consensus 135 e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~~p 207 (504)
+.+.-+|..+|.|+||.|+.+|| + .. +. .....+..+|+.+|.|+||.|+++||...+ ..|
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~-~~---------l~-~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~ 109 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAP-IR---------LD-PNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKE 109 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHH-HH---------cc-chHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hCh
Confidence 46888999999999999999999 6 21 11 112556789999999999999999999998 443
No 412
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0021 Score=63.99 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=76.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC-----C--CCCccceEEEEEEEcC-CCcEE-EEEEecCChh--------
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-----Y--APTTGEQYAVNVVDQP-GGNKK-TLILQEIPEE-------- 344 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~-----~--~~T~~~~~~~~~v~~~-~~~~~-~li~d~~g~~-------- 344 (504)
.-.|.+.++|.+|.|||||+|.|+...+... . .+.....+....+.+. +|... +.++|++|--
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3468999999999999999999998765432 0 1111112222233332 23332 3356666531
Q ss_pred ----------hHhhhhhh-----hhhcc--cccEEEEEEeCCCc-ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCC
Q 010673 345 ----------GVKKILSN-----KEALA--SCDVTIFVYDSSDE-YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 406 (504)
Q Consensus 345 ----------~~~~~~~~-----~~~~~--~ad~iilV~D~s~~-~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 406 (504)
.+...... ...+. ..++++|.+..+.. -.--++ ...+.+ ...+.+|-|.-|+|.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk~l-------~~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMKKL-------SKKVNLIPVIAKADT 170 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHHHH-------hccccccceeecccc
Confidence 11111100 11222 67899999987643 222221 222333 347888999999999
Q ss_pred CCCccchH---HHHHHHHHhCCC
Q 010673 407 KPYTMAVQ---DSARVTQELGIE 426 (504)
Q Consensus 407 ~~~~~~~~---~~~~~~~~~~~~ 426 (504)
....+... .+.+-...++++
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~ 193 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIK 193 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcc
Confidence 87665533 445555566665
No 413
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.40 E-value=0.00092 Score=66.39 Aligned_cols=114 Identities=10% Similarity=0.035 Sum_probs=66.9
Q ss_pred EEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCccc----------HHHHHHHHHHHHHhccCCCCCCcEEEEEECC
Q 010673 335 TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYS----------WKRTKELLVEVARLGEDSGYGVPCLLIASKD 404 (504)
Q Consensus 335 ~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s----------~~~~~~~~~~l~~~~~~~~~~~piilV~NK~ 404 (504)
.-++|..|+...+.-| ...+.++++||||+++|+-+- ..+...+++.+..+. ...+.++|+..||.
T Consensus 197 f~~~DvGGQRseRrKW--ihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~--~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 197 FRMFDVGGQRSERKKW--IHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK--WFANTSIILFLNKK 272 (354)
T ss_pred eEEEeCCCcHHHhhhH--HHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc--ccccCcEEEEeecH
Confidence 3345666664445555 558899999999999986321 223345555555432 14689999999999
Q ss_pred CCCCCccc----------------hHH-----HHHHHHHhCC---C-CeEEEeccc-cCHHHHHHHHHHHHhCC
Q 010673 405 DLKPYTMA----------------VQD-----SARVTQELGI---E-PPIPVSMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 405 Dl~~~~~~----------------~~~-----~~~~~~~~~~---~-~~~~vSak~-~gi~el~~~l~~~~~~~ 452 (504)
|+-.+... .+. ...|...+.- + .+..+.|.+ .+|+.+|..+.+.+...
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 98432211 111 1112111111 1 134456666 88888888888776543
No 414
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.39 E-value=0.00012 Score=58.44 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=48.0
Q ss_pred hhHHHHHHh-hcCCCCc-cccCCCC-CCCCCCCCCCccccCh-hHHHHHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 135 ETTWAVLRK-FGYGDDL-ELRDDFL-PVPTKLSPDQSVELAS-EAVEFLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 135 e~~~~~~~~-f~~d~~~-~i~~~~l-~~~~~~~~~~~~~l~~-~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
+.++.+|+. +|.|+++ .|+.++| . .+...... -++. ....++.++|+.+|.|+||.|+++||..++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~-ll~~e~~~--~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLS-FMNTELAS--FTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHH-HHHHhhhH--hhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 468899999 8898876 9999888 5 33111000 0111 1126788999999999999999999988765
No 415
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.37 E-value=0.00028 Score=65.02 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCC
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPF 309 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~ 309 (504)
.+++++|.+|||||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998653
No 416
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.37 E-value=0.00066 Score=48.44 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=31.9
Q ss_pred ccccEEEEEEeCCCc--ccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCC
Q 010673 357 ASCDVTIFVYDSSDE--YSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 357 ~~ad~iilV~D~s~~--~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
.-.++|+|++|.|.. -|.+....++++++.. ..++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~----F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL----FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH----TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH----cCCCCEEEEEeccC
Confidence 457899999999865 5677778888888877 56899999999998
No 417
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00033 Score=69.70 Aligned_cols=136 Identities=19% Similarity=0.304 Sum_probs=82.1
Q ss_pred HHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCchh
Q 010673 57 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET 136 (504)
Q Consensus 57 ~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~e~ 136 (504)
.-++-=|..||+...|.|+..++..++...-+.+.-..+ .+...+.+..++. +.||+++||...... . .+.++
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~--~~lkrvk~kf~~~--~~gISl~Ef~~Ff~F-l--~~l~d 390 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKH--KYLKRVKEKFKDD--GKGISLQEFKAFFRF-L--NNLND 390 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHH--HHHHHHHHhccCC--CCCcCHHHHHHHHHH-H--hhhhH
Confidence 344556888888888888888888776654444433222 2222333322221 567999998754321 1 23456
Q ss_pred HHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCCCHHHHhhhhccC
Q 010673 137 TWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA 206 (504)
Q Consensus 137 ~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~~ 206 (504)
.-.|++.+..- .+.|+..++ . ....-.+ ++||.. .+.-+|..||.|+||.||.+||..++...
T Consensus 391 fd~Al~fy~~A-g~~i~~~~f~r-aa~~vtG--veLSdh---VvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 391 FDIALRFYHMA-GASIDEKTFQR-AAKVVTG--VELSDH---VVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHH-HHHHhcC--cccccc---eeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 66677777552 344554444 3 1111111 145543 35568999999999999999999999954
No 418
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.34 E-value=0.00011 Score=59.02 Aligned_cols=64 Identities=23% Similarity=0.176 Sum_probs=50.1
Q ss_pred hhHHHHHHhhc-CCCCcc-ccCCCC-CCCCCCCCCCccccChh-----HHHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 ETTWAVLRKFG-YGDDLE-LRDDFL-PVPTKLSPDQSVELASE-----AVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e~~~~~~~~f~-~d~~~~-i~~~~l-~~~~~~~~~~~~~l~~~-----~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
+++.++|+.|| .|++|. |+.++| . .+.. .++.. ..+.+.+||+.+|.|++|.|+++||..++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~-~l~~------~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKD-LLQT------ELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHH-HHHH------HHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 57999999997 999994 999999 5 3311 12221 2367999999999999999999999888763
No 419
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.32 E-value=0.00024 Score=72.48 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=44.7
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhh
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL 350 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~ 350 (504)
....+.|.+||.|||||||+||.|.|.+...++ .|.+-+-+..++.+.. .+...|.+|- .+.++.
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL-VfPSf~ 375 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL-VFPSFS 375 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc-cccCCC
Confidence 344799999999999999999999999865544 4555555555666652 2334555554 555443
No 420
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.31 E-value=0.001 Score=52.67 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=56.6
Q ss_pred HHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcC----CCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g----~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+.++..+-.+|..|-.| +|.||..||..++.+-|+ ..-.++.++.+|+.+|.+ +||.|+|.||+.+..
T Consensus 4 E~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n-----~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 4 EHSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC-----RDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC-----CCCcCcHHHHHHHHH
Confidence 56788999999999955 459999999999876665 344578899999999887 577899999998764
No 421
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.31 E-value=0.00086 Score=59.57 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=37.0
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC--CCCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN--YAPTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~--~~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
....+++++|.||||||||+|++.+...... ..+|+.... .+.++ ....++|++|
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~---~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ---EVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE---EEEec---CCEEEEECCC
Confidence 4568899999999999999999998764322 233444322 23333 2356778876
No 422
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.28 E-value=0.00012 Score=43.28 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.8
Q ss_pred HHHhhhhhcCCCCCCCCHHHHhhh
Q 010673 179 LRGIFGLYDIDNDGAVRPAELEDL 202 (504)
Q Consensus 179 l~~lf~~~D~d~dG~l~~~e~~~l 202 (504)
|.++|+.+|.|+||.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467899999999999999999875
No 423
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.27 E-value=0.0024 Score=63.80 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=52.3
Q ss_pred EEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCc----------ccHHHHHHHHHHHHHhccCCCCCCcEEEEEE
Q 010673 333 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDE----------YSWKRTKELLVEVARLGEDSGYGVPCLLIAS 402 (504)
Q Consensus 333 ~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~----------~s~~~~~~~~~~l~~~~~~~~~~~piilV~N 402 (504)
..+.+||..|+...+..| ..++.++++|++|+|+++- ..+.+....+..+.... ...+.|+++++|
T Consensus 161 ~~~~~~DvgGq~~~R~kW--~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~--~~~~~pill~~N 236 (317)
T cd00066 161 LKFRMFDVGGQRSERKKW--IHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR--WFANTSIILFLN 236 (317)
T ss_pred eEEEEECCCCCcccchhH--HHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc--cccCCCEEEEcc
Confidence 556677888877777777 5688999999999999874 33555555555555432 136899999999
Q ss_pred CCCCC
Q 010673 403 KDDLK 407 (504)
Q Consensus 403 K~Dl~ 407 (504)
|.|+.
T Consensus 237 K~D~f 241 (317)
T cd00066 237 KKDLF 241 (317)
T ss_pred ChHHH
Confidence 99964
No 424
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.26 E-value=0.00013 Score=59.15 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=49.8
Q ss_pred hhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 ETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
+.+..+|+.||.|++|.|+.+++ . .+. .++ ...+++.+||+.+|.+++|.|+++||..++..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~-~l~-------~~~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKP-ILL-------KSG-LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHH-HHH-------HcC-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 46889999999999999999888 5 331 111 11267889999999999999999999988874
No 425
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.25 E-value=0.00031 Score=62.21 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhhHHHHHHhcCC
Q 010673 286 RCLLFGPQNAGKSALLNSFLERP 308 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~ 308 (504)
.++++|++|||||||+|.|.+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999874
No 426
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.25 E-value=0.00085 Score=65.26 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=53.1
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCC--CccceEEEEEEEcCCCc---------------EEEEEEecCChh
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGN---------------KKTLILQEIPEE 344 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~--T~~~~~~~~~v~~~~~~---------------~~~li~d~~g~~ 344 (504)
.+-+++.|||.||||||||+|.|++........| |+... ...+.+++.. -.+.++|.+|--
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn--~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPN--EARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccc--cceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 4568999999999999999999998887654444 33332 1223333111 122345554421
Q ss_pred --------hHhhhhhhhhhcccccEEEEEEeCCC
Q 010673 345 --------GVKKILSNKEALASCDVTIFVYDSSD 370 (504)
Q Consensus 345 --------~~~~~~~~~~~~~~ad~iilV~D~s~ 370 (504)
.-..+ +..++.+|+++.|+++..
T Consensus 96 kGAs~G~GLGN~F---Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKF---LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHH---HHhhhhccceeEEEEecC
Confidence 11222 457889999999999864
No 427
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.029 Score=49.21 Aligned_cols=151 Identities=21% Similarity=0.356 Sum_probs=75.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcC----CCCCC--CCC---CccceEEEEEEEcCCCcEEEEEEecCCh---------
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLER----PFSEN--YAP---TTGEQYAVNVVDQPGGNKKTLILQEIPE--------- 343 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~----~~~~~--~~~---T~~~~~~~~~v~~~~~~~~~li~d~~g~--------- 343 (504)
+..+||.|-|+||||||||+.++.+. .+... +-+ ..+...-.+.+++..|....+-....+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 45689999999999999999988732 12110 001 1111222233444434333332211111
Q ss_pred -hhHhh--hhhhhhhcccccEEEEEEeCCCcccH--HHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHH
Q 010673 344 -EGVKK--ILSNKEALASCDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSAR 418 (504)
Q Consensus 344 -~~~~~--~~~~~~~~~~ad~iilV~D~s~~~s~--~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~ 418 (504)
+..+. ..+-...++.||++|+ |=--|--+ ....+.+.++.. .+.|++.+..+.+... .+++
T Consensus 83 v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~------~~kpliatlHrrsr~P------~v~~ 148 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLK------SGKPLIATLHRRSRHP------LVQR 148 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhc------CCCcEEEEEecccCCh------HHHH
Confidence 11110 1111335566787664 53322111 122333444442 3788988888776532 1222
Q ss_pred HHHHhCCCCeEEEeccc-cCHHHHHHHHHHHHhC
Q 010673 419 VTQELGIEPPIPVSMKS-KDLNNVFSRIIWAAEH 451 (504)
Q Consensus 419 ~~~~~~~~~~~~vSak~-~gi~el~~~l~~~~~~ 451 (504)
+ +..+.. ++. .+ .|=+.++..|...+..
T Consensus 149 i-k~~~~v-~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 149 I-KKLGGV-YVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred h-hhcCCE-EEE---EccchhhHHHHHHHHHhcc
Confidence 2 222322 222 56 6777888888887643
No 428
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.24 E-value=0.00013 Score=58.11 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=47.7
Q ss_pred hHHHHHHhhcC-CC-CccccCCCC-CCCCCCCCCCccccChhH-HHHHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 136 TTWAVLRKFGY-GD-DLELRDDFL-PVPTKLSPDQSVELASEA-VEFLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 136 ~~~~~~~~f~~-d~-~~~i~~~~l-~~~~~~~~~~~~~l~~~~-~~~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
.+-++|+.|+. |+ +|+|+.++| . .+... ..++... .+++.+||+..|.|+||+|+++||..++.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~-~l~~~----~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKE-LIQKE----LTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHH-HHHHH----HhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 57788899987 67 789999988 5 33100 0123322 27899999999999999999999987765
No 429
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0022 Score=62.92 Aligned_cols=153 Identities=21% Similarity=0.254 Sum_probs=86.2
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCC---------------CC-Cc-------cceEEEEEEEcCC---------
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENY---------------AP-TT-------GEQYAVNVVDQPG--------- 330 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~---------------~~-T~-------~~~~~~~~v~~~~--------- 330 (504)
-.++++|+|...+|||||+--|+.+...... .+ |. +-+-..+.+.+..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3579999999999999999988876542210 01 11 1000011111110
Q ss_pred -CcEEEEEEecCChhhHhhhhhhhhhc--ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 331 -GNKKTLILQEIPEEGVKKILSNKEAL--ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 331 -~~~~~li~d~~g~~~~~~~~~~~~~~--~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
......++|-+|+..+..- +...+ -..|..++|+++...-.... ++-+..+... ++|++++.+|+|+.
T Consensus 246 ~SSKlvTfiDLAGh~kY~~T--Ti~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL------~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKT--TIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL------NIPFFVLVTKMDLV 316 (591)
T ss_pred hhcceEEEeecccchhhhee--eeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh------CCCeEEEEEeeccc
Confidence 1123335777777555321 11111 24678889998876644332 3334444443 89999999999998
Q ss_pred CCccchH---HHHHHHHHhC-------------------------CCCeEEEeccc-cCHHHHHHH
Q 010673 408 PYTMAVQ---DSARVTQELG-------------------------IEPPIPVSMKS-KDLNNVFSR 444 (504)
Q Consensus 408 ~~~~~~~---~~~~~~~~~~-------------------------~~~~~~vSak~-~gi~el~~~ 444 (504)
...-... ++..+..+.| +-|+|.+|+.+ +|++-+...
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 8643332 2222322222 22578889888 887655443
No 430
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.21 E-value=0.0027 Score=63.98 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=60.2
Q ss_pred CCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCc----------ccHHHHHHHHHH
Q 010673 314 APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDE----------YSWKRTKELLVE 383 (504)
Q Consensus 314 ~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~----------~s~~~~~~~~~~ 383 (504)
.||++. ....+.++ + ..+.+||..|+...+..| ..++.++++||||+|+++- ..+.+....+..
T Consensus 169 ~~T~Gi--~~~~f~~~-~-~~~~~~DvgGqr~~R~kW--~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~ 242 (342)
T smart00275 169 VPTTGI--QETAFIVK-K-LFFRMFDVGGQRSERKKW--IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFES 242 (342)
T ss_pred CCccce--EEEEEEEC-C-eEEEEEecCCchhhhhhH--HHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHH
Confidence 345553 33345555 2 455677777776677777 5688999999999999973 345555556666
Q ss_pred HHHhccCCCCCCcEEEEEECCCCCC
Q 010673 384 VARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 384 l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
+.... ...+.|+++++||.|+..
T Consensus 243 l~~~~--~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 243 ICNSR--WFANTSIILFLNKIDLFE 265 (342)
T ss_pred HHcCc--cccCCcEEEEEecHHhHH
Confidence 65432 246899999999999853
No 431
>PRK12289 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.00058 Score=68.81 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=34.9
Q ss_pred EEEEcCCCchhhHHHHHHhcCCCCCCC--CC-------CccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 287 CLLFGPQNAGKSALLNSFLERPFSENY--AP-------TTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 287 I~vvG~~~vGKSSLin~l~~~~~~~~~--~~-------T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
++|+|.+|||||||+|+|++.....+. +. ||+. ...+.+++|. .++|+||-
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~---~~l~~l~~g~---~liDTPG~ 234 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH---VELFELPNGG---LLADTPGF 234 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce---eEEEECCCCc---EEEeCCCc
Confidence 799999999999999999976543221 11 3332 2445665342 67888886
No 432
>PRK12288 GTPase RsgA; Reviewed
Probab=97.12 E-value=0.0008 Score=67.78 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEcCCCchhhHHHHHHhcCCC
Q 010673 287 CLLFGPQNAGKSALLNSFLERPF 309 (504)
Q Consensus 287 I~vvG~~~vGKSSLin~l~~~~~ 309 (504)
++|+|.+|||||||+|+|++...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 79999999999999999998754
No 433
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.05 E-value=0.0081 Score=55.73 Aligned_cols=142 Identities=16% Similarity=0.235 Sum_probs=75.2
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCCCCC---------CCCCccceEEEEEEEcCCCcEEEEEEecCChh--------
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---------YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-------- 344 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~---------~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~-------- 344 (504)
.-.|+|+|||.+|.|||||+|.|........ +..|+........+.-.+-+.++.++|++|-.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 3468999999999999999999987654321 12233332223333333222344568887741
Q ss_pred ----------hHhhhhh------hhhhc--ccccEEEEEEeCCCcccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCC
Q 010673 345 ----------GVKKILS------NKEAL--ASCDVTIFVYDSSDEYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 345 ----------~~~~~~~------~~~~~--~~ad~iilV~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
.+....+ ....+ ...+++++.+..+- .++..+ .++++.+.+ -+.+|-|.-|+|
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-------vvNvvPVIakaD 195 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-------VVNVVPVIAKAD 195 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-------hheeeeeEeecc
Confidence 1111110 01112 23577788777653 233222 233444433 466788889999
Q ss_pred CCCCccchH---HHHHHHHHhCCCCeEEEe
Q 010673 406 LKPYTMAVQ---DSARVTQELGIEPPIPVS 432 (504)
Q Consensus 406 l~~~~~~~~---~~~~~~~~~~~~~~~~vS 432 (504)
-..-++... .+++-...+++. +++--
T Consensus 196 tlTleEr~~FkqrI~~el~~~~i~-vYPq~ 224 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHGID-VYPQD 224 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 765333322 344444566665 44333
No 434
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.05 E-value=0.0011 Score=63.76 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCC
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPF 309 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~ 309 (504)
.++++|.+|||||||+|+|.+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhh
Confidence 689999999999999999998654
No 435
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.02 E-value=0.00022 Score=56.84 Aligned_cols=68 Identities=25% Similarity=0.216 Sum_probs=49.8
Q ss_pred hhHHHHHHhhcC--CCCccccCCCC-CCCCCCCCCCccccCh-hHHHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 135 ETTWAVLRKFGY--GDDLELRDDFL-PVPTKLSPDQSVELAS-EAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 135 e~~~~~~~~f~~--d~~~~i~~~~l-~~~~~~~~~~~~~l~~-~~~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
+++..+|+.||. |++|.|+.++| . .+....+. .++. ...+++.+||+.+|.+++|.|+++||..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~-~l~~~~g~--~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKE-LLETELPN--FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHH-HHHHHhhh--hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 468889999999 89999999888 5 33110000 0111 11377899999999999999999999988764
No 436
>PRK13695 putative NTPase; Provisional
Probab=97.02 E-value=0.0088 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEEcCCCchhhHHHHHHhc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLE 306 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~ 306 (504)
++|++.|.+|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999654
No 437
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.00 E-value=0.00064 Score=57.23 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHH
Q 010673 56 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF 123 (504)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~ 123 (504)
...+-+-.+.||+++.|.|...||+..+. .+|..++++|++.++.-... .+|.|+++.|+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLt-tlGekl~eeEVe~Llag~eD------~nG~i~YE~fVk 147 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLT-TLGEKLTEEEVEELLAGQED------SNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHH-HHHhhccHHHHHHHHccccc------cCCcCcHHHHHH
Confidence 35677888999999999999999999987 56999999999998855421 245699999974
No 438
>PRK13796 GTPase YqeH; Provisional
Probab=96.99 E-value=0.0012 Score=67.28 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=35.4
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCC----C---CCCCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPF----S---ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~----~---~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
.++.|+|.+|||||||+|+|.+... . ...++||.. ...+.++++ ..++|++|-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~---~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD---KIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce---eEEEEcCCC---cEEEECCCc
Confidence 3799999999999999999986431 1 112334443 233555533 367889886
No 439
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.99 E-value=0.00086 Score=60.64 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=35.2
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH
Q 010673 360 DVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE 422 (504)
Q Consensus 360 d~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 422 (504)
|+|++|+|+.++.+..+ ..+.+.+.-. ..+.|+++|.||+|+.+........+.+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~----~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQA----GGNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhc----cCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 79999999988744321 2222222101 2368999999999997654433344444443
No 440
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.0016 Score=65.07 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.5
Q ss_pred HHHHHhHhhhcCCCCCccCHHHHHHHHH
Q 010673 57 RALKRIFIICDHDMDGALNDAELNEFQV 84 (504)
Q Consensus 57 ~~l~~~F~~~D~d~dG~l~~~El~~~~~ 84 (504)
+.++=||++||.||||-|+.+|+...|.
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 5677899999999999999999977653
No 441
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.93 E-value=0.0033 Score=54.00 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=55.4
Q ss_pred HHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 56 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 56 ~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
...+..||+.||.+++|+|..+.|++++.. .|-.++++|++.|.+..-.+ ..|-+++..|..+.+
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV~~m~r~~p~d-----~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEVDEMYREAPID-----KKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHH-hcccCCHHHHHHHHHhCCcc-----cCCceeHHHHHHHHH
Confidence 456889999999999999999999999885 79999999999999887443 234499999987765
No 442
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.92 E-value=0.0039 Score=73.01 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=63.7
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCCC----CCC--ccceEEEEEEEcCCCcEEEEEEecCChh------------
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSENY----APT--TGEQYAVNVVDQPGGNKKTLILQEIPEE------------ 344 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~T--~~~~~~~~~v~~~~~~~~~li~d~~g~~------------ 344 (504)
..+=.+|+|++|+||||++++- |-.+.... ..+ .+.+.... .-+. ...+++|+.|.-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~---~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFT---DEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEec---CCEEEEcCCCccccCCCcccccHH
Confidence 3345799999999999999987 44443211 011 11111111 1111 123456666521
Q ss_pred hHhhhhhhh---hhcccccEEEEEEeCCCccc--H-------HHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 345 GVKKILSNK---EALASCDVTIFVYDSSDEYS--W-------KRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 345 ~~~~~~~~~---~~~~~ad~iilV~D~s~~~s--~-------~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
....+.... ..-+-.|+||+++|+++-.. - ..+...+.++.... .-..||.+|.||+|+.
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l---g~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL---GARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEecchhh
Confidence 112222111 12245899999999875421 1 12334444444332 4589999999999985
No 443
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.00092 Score=63.84 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=92.9
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCCC---CCC-----------------------------C---CCCccceEEEEEE
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERPF---SEN-----------------------------Y---APTTGEQYAVNVV 326 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~~---~~~-----------------------------~---~~T~~~~~~~~~v 326 (504)
.-.++|.-+|...-||||+++++.+-.- ... | .....+.. ..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~---~c 112 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRP---PC 112 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCC---Cc
Confidence 3467899999999999999999886321 000 0 00000100 01
Q ss_pred EcCC--CcEE----EEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEE
Q 010673 327 DQPG--GNKK----TLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLI 400 (504)
Q Consensus 327 ~~~~--~~~~----~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV 400 (504)
+..+ |... .-+.|.+|++..-.-. ..-..-.|++++++..+.+-.-....+.+..+.-. .=..++++
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTM--LnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-----~Lkhiiil 185 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATM--LNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-----KLKHIIIL 185 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHH--hcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-----hhceEEEE
Confidence 1111 2122 2257888886553322 22333457778877766432211112222222211 13568999
Q ss_pred EECCCCCCCccchH---HHHHHHHHhCCC--CeEEEeccc-cCHHHHHHHHHHHHhCC
Q 010673 401 ASKDDLKPYTMAVQ---DSARVTQELGIE--PPIPVSMKS-KDLNNVFSRIIWAAEHP 452 (504)
Q Consensus 401 ~NK~Dl~~~~~~~~---~~~~~~~~~~~~--~~~~vSak~-~gi~el~~~l~~~~~~~ 452 (504)
-||+|+..+.+..+ ++..|.+.-... +++++||.- .||+-+.+.|.+.+-.|
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 99999998776655 444444433322 589999999 99999999999887544
No 444
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0039 Score=66.58 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=77.4
Q ss_pred cCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC--------------CCCccceEEEEEEEcCCCcEEEEEEecCChhhH
Q 010673 281 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENY--------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV 346 (504)
Q Consensus 281 ~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~--------------~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~ 346 (504)
.++.-+++++-.-.-|||||...|+..+-.... ..|.+.+.....+..-.+...+.++|.+|+-.+
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 355668999999999999999999865532111 112232222223333224567778999999888
Q ss_pred hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCC
Q 010673 347 KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDL 406 (504)
Q Consensus 347 ~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl 406 (504)
.+..+ ...+-+|+.++++|+...-.-+. ...+.+... .+..+++|.||+|.
T Consensus 86 ~sevs--sas~l~d~alvlvdvvegv~~qt-~~vlrq~~~------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVS--SASRLSDGALVLVDVVEGVCSQT-YAVLRQAWI------EGLKPILVINKIDR 136 (887)
T ss_pred hhhhh--hhhhhcCCcEEEEeeccccchhH-HHHHHHHHH------ccCceEEEEehhhh
Confidence 76654 35678999999999977644333 233444332 27788999999993
No 445
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.029 Score=59.04 Aligned_cols=137 Identities=16% Similarity=0.124 Sum_probs=71.3
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcC--------CCCCCCCCCcc-----------ce--EEEEEEEcC---------CC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSENYAPTTG-----------EQ--YAVNVVDQP---------GG 331 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~--------~~~~~~~~T~~-----------~~--~~~~~v~~~---------~~ 331 (504)
...-.|+|+|++|+||||++..|... ........+.+ .. +........ -.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34557899999999999999888752 11000000100 00 011111000 01
Q ss_pred cEEEEEEecCChhhHhhh-h---hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 332 NKKTLILQEIPEEGVKKI-L---SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 332 ~~~~li~d~~g~~~~~~~-~---~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
...++++|++|....... . ....... ....++|++.+. +...+...+..+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-------~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-------AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-------hCCeEEEEecCcCc
Confidence 245778999986322111 0 0011112 235677777764 34455555555443 24677999999974
Q ss_pred CCccchHHHHHHHHHhCCCCeEEEe
Q 010673 408 PYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
.. .-.+-.+....+++ +..++
T Consensus 498 ~~---lG~aLsv~~~~~LP-I~yvt 518 (559)
T PRK12727 498 GR---FGSALSVVVDHQMP-ITWVT 518 (559)
T ss_pred cc---hhHHHHHHHHhCCC-EEEEe
Confidence 42 22455666677776 44443
No 446
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.88 E-value=0.023 Score=58.61 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=38.9
Q ss_pred hhhcccccEEEEEEeCCCccc-HHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-HHHHHH
Q 010673 353 KEALASCDVTIFVYDSSDEYS-WKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-DSARVT 420 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s-~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~ 420 (504)
..++.+.++||+|+--.+-+. -..+.++..++. ..+...|+|.+|.|+.+...... .++++.
T Consensus 443 KayM~NPNAIILCIQDGSVDAERSnVTDLVsq~D------P~GrRTIfVLTKVDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 443 KAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD------PHGRRTIFVLTKVDLAEKNVASPSRIQQII 506 (980)
T ss_pred HHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcC------CCCCeeEEEEeecchhhhccCCHHHHHHHH
Confidence 668899999999985333222 123344444443 34778899999999987644322 444443
No 447
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.86 E-value=0.085 Score=53.48 Aligned_cols=81 Identities=9% Similarity=0.154 Sum_probs=53.0
Q ss_pred EEEEEEeCCC----cccHHHH-HHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc
Q 010673 361 VTIFVYDSSD----EYSWKRT-KELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS 435 (504)
Q Consensus 361 ~iilV~D~s~----~~s~~~~-~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~ 435 (504)
++++--|.|= ++.+..+ ++.+.+++.. ++|.+++.|-.+ +...+..+...++..+|+.+ +++++|..
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~i------gKPFvillNs~~-P~s~et~~L~~eL~ekY~vp-Vlpvnc~~ 219 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEI------GKPFVILLNSTK-PYSEETQELAEELEEKYDVP-VLPVNCEQ 219 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHh------CCCEEEEEeCCC-CCCHHHHHHHHHHHHHhCCc-EEEeehHH
Confidence 4444445441 2344433 5677788766 899999999887 33344445778899999998 99999987
Q ss_pred cCHHHHHHHHHHHH
Q 010673 436 KDLNNVFSRIIWAA 449 (504)
Q Consensus 436 ~gi~el~~~l~~~~ 449 (504)
-.-+++..-|.+.+
T Consensus 220 l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 220 LREEDITRILEEVL 233 (492)
T ss_pred cCHHHHHHHHHHHH
Confidence 33444444444444
No 448
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.85 E-value=0.0005 Score=42.97 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.7
Q ss_pred HHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 178 FLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 178 ~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
.+.++|+.+|.|+||.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999998876
No 449
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.85 E-value=0.0017 Score=53.22 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 50 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 50 ~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
.|++++...+..+|...|. +||.|+-++...+.. ...|+.+.|..|-+..|.+ ++|.++++||...|.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~---~S~L~~~~L~~IW~LaD~~-----~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFM---KSGLPRDVLAQIWNLADID-----NDGKLDFEEFAIAMH 70 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHH---HTTSSHHHHHHHHHHH-SS-----SSSEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHH---HcCCCHHHHHHHHhhhcCC-----CCCcCCHHHHHHHHH
Confidence 4788999999999999985 689999999999866 4589999999999999876 466699999985554
No 450
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.85 E-value=0.0016 Score=66.30 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=58.9
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCC------CC-CCCCccceEEEEEEEcCCCcEEEEEEecCChhhHhhhhhh--hh-
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFS------EN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSN--KE- 354 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~------~~-~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~~~~~~~--~~- 354 (504)
.+|+++|.+|||||||+|+|++.... .. .++||. ....+.++++ ..++|++|-.....+... ..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~---~~~~~~~~~~---~~l~DtPG~~~~~~~~~~l~~~~ 228 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTL---DLIEIPLDDG---HSLYDTPGIINSHQMAHYLDKKD 228 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEe---eEEEEEeCCC---CEEEECCCCCChhHhhhhcCHHH
Confidence 48999999999999999999985431 11 223333 2334555422 357899887433222110 00
Q ss_pred -----hcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCC
Q 010673 355 -----ALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPY 409 (504)
Q Consensus 355 -----~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~ 409 (504)
--+....+.++.+....-.+..+.. +.-+. .....+.+.++|.+....
T Consensus 229 l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~-~d~~~------~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 229 LKYITPKKEIKPKTYQLNPNQTLFLGGLAR-FDYLK------GEKTSFTFYVSNELNIHR 281 (360)
T ss_pred HhhcCCCCccCceEEEeCCCCEEEEceEEE-EEEec------CCceEEEEEccCCceeEe
Confidence 0123455666666544322222110 11010 235567777777776554
No 451
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.83 E-value=0.0083 Score=58.30 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=64.7
Q ss_pred hcccccEEEEEEeCCCcc-cHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccch-HHHHHHHHHhCCCCeEEEe
Q 010673 355 ALASCDVTIFVYDSSDEY-SWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAV-QDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 355 ~~~~ad~iilV~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vS 432 (504)
.+.+.|-+++|+.+.+|+ +..-+.+++-.+... ++.-++|.||+|+..+.... ++...+...++.+ ++.+|
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~------gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~-v~~~s 148 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG------GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP-VLFVS 148 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHc------CCcEEEEEEccccCcchHHHHHHHHHHHHhCCee-EEEec
Confidence 334577888888888874 455556666555533 78888889999999866544 3566677778887 89999
Q ss_pred ccc-cCHHHHHHHHHHH
Q 010673 433 MKS-KDLNNVFSRIIWA 448 (504)
Q Consensus 433 ak~-~gi~el~~~l~~~ 448 (504)
+++ .|++++.+.+...
T Consensus 149 ~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 149 AKNGDGLEELAELLAGK 165 (301)
T ss_pred CcCcccHHHHHHHhcCC
Confidence 999 9999998887643
No 452
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.83 E-value=0.0037 Score=53.01 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 53 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 53 ~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
|.++++.- ||++||-|+|+.|-.++|...+.++-...|+++|+.-+.+.+-.. .+.-++|.++|.+|-.+..
T Consensus 105 PrdlK~~Y-AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieE-AD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 105 PRDLKAKY-AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEE-ADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred hHHhhhhh-eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-hcCCCCCcccHHHHHHHHH
Confidence 44455544 999999999999999999999999999999999988777665443 1222477799999976643
No 453
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.80 E-value=0.0019 Score=59.48 Aligned_cols=137 Identities=17% Similarity=0.137 Sum_probs=79.2
Q ss_pred HHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh----hccCCcCCCCCCHHhHHHHHHHH-
Q 010673 54 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQE----KQHDGVNDLGLTLSGFLFLHALF- 128 (504)
Q Consensus 54 ~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~----~~~~~~~~~~i~~~~Fl~l~~~~- 128 (504)
...+.|..+|+.-|.|-||+||+.|+..+.+.- +++.+++-|+.-.. -+|+ ++|.|..++|..-....
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImek-----taEHfqeameeSkthFraVDpd--gDGhvsWdEykvkFlask 170 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEK-----TAEHFQEAMEESKTHFRAVDPD--GDGHVSWDEYKVKFLASK 170 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHH-----HHHHHHHHHhhhhhheeeeCCC--CCCceehhhhhhHHHhhc
Confidence 345789999999999999999999998886643 34444444443211 1222 47779999996322110
Q ss_pred ----------Hhc---CCc-hhHHHHHHhhcCCCCc---------cccCCCCCCCCCCCCCCccccChhHH-HHHHHhhh
Q 010673 129 ----------IEK---GRL-ETTWAVLRKFGYGDDL---------ELRDDFLPVPTKLSPDQSVELASEAV-EFLRGIFG 184 (504)
Q Consensus 129 ----------~~~---~~~-e~~~~~~~~f~~d~~~---------~i~~~~l~~~~~~~~~~~~~l~~~~~-~~l~~lf~ 184 (504)
+.. -+. ++...+++.. .|..+ .++..++. .+.- .+.|..+. ..+.+|.+
T Consensus 171 ghsekevadairlneelkVDeEtqevlenl-kdRwyqaDsppadlllteeEfl-sFLH-----PEhSrgmLrfmVkeivr 243 (362)
T KOG4251|consen 171 GHSEKEVADAIRLNEELKVDEETQEVLENL-KDRWYQADSPPADLLLTEEEFL-SFLH-----PEHSRGMLRFMVKEIVR 243 (362)
T ss_pred CcchHHHHHHhhccCcccccHHHHHHHHhh-hhhhccccCchhhhhhhHHHHH-HHcC-----hHhhhhhHHHHHHHHHH
Confidence 000 011 2333333322 22222 22222210 0000 04444444 44568999
Q ss_pred hhcCCCCCCCCHHHHhhhhc
Q 010673 185 LYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 185 ~~D~d~dG~l~~~e~~~l~~ 204 (504)
.+|+|||-.++..||..+.-
T Consensus 244 dlDqdgDkqlSvpeFislpv 263 (362)
T KOG4251|consen 244 DLDQDGDKQLSVPEFISLPV 263 (362)
T ss_pred HhccCCCeeecchhhhcCCC
Confidence 99999999999999986544
No 454
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.76 E-value=0.016 Score=57.79 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcC
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~ 307 (504)
..-.+|.|.-|+|||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345678899999999999999864
No 455
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.73 E-value=0.0022 Score=64.58 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=71.8
Q ss_pred HHHHHh---HhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCC
Q 010673 57 RALKRI---FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR 133 (504)
Q Consensus 57 ~~l~~~---F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~ 133 (504)
..+.++ |+-.|+|+||.|+.++|..+ -...++.-=++.|++.|.....- ..+|.+++++|+....-...+..
T Consensus 275 e~f~viy~kFweLD~Dhd~lidk~~L~ry----~d~tlt~~ivdRIFs~v~r~~~~-~~eGrmdykdFv~FilA~e~k~t 349 (493)
T KOG2562|consen 275 EHFYVIYCKFWELDTDHDGLIDKEDLKRY----GDHTLTERIVDRIFSQVPRGFTV-KVEGRMDYKDFVDFILAEEDKDT 349 (493)
T ss_pred HHHHHHHHHHhhhccccccccCHHHHHHH----hccchhhHHHHHHHhhcccccee-eecCcccHHHHHHHHHHhccCCC
Confidence 345667 99999999999999999655 25667777777777755433111 12455999999977655555566
Q ss_pred chhHHHHHHhhcCCCCccccCCCC
Q 010673 134 LETTWAVLRKFGYGDDLELRDDFL 157 (504)
Q Consensus 134 ~e~~~~~~~~f~~d~~~~i~~~~l 157 (504)
...+.-.||..|-|++|.|+.++|
T Consensus 350 ~~SleYwFrclDld~~G~Lt~~el 373 (493)
T KOG2562|consen 350 PASLEYWFRCLDLDGDGILTLNEL 373 (493)
T ss_pred ccchhhheeeeeccCCCcccHHHH
Confidence 666777899999999999998777
No 456
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.71 E-value=0.002 Score=58.71 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=33.4
Q ss_pred ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhC
Q 010673 357 ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELG 424 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 424 (504)
-..+.++.|+|+.+-.........+..-.+ ..=++|.||+|+.+..+..+..++..++++
T Consensus 112 ~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--------~ADvIvlnK~D~~~~~~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 112 FRLDSIITVVDATNFDELENIPELLREQIA--------FADVIVLNKIDLVSDEQKIERVREMIRELN 171 (178)
T ss_dssp ESESEEEEEEEGTTHGGHTTHCHHHHHHHC--------T-SEEEEE-GGGHHHH--HHHHHHHHHHH-
T ss_pred ccccceeEEeccccccccccchhhhhhcch--------hcCEEEEeccccCChhhHHHHHHHHHHHHC
Confidence 457899999999764333333333222222 223789999999876644345555555555
No 457
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.71 E-value=0.0029 Score=61.40 Aligned_cols=53 Identities=32% Similarity=0.423 Sum_probs=34.3
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCC------CCCC-CC--CccceEEEEEEEcCCCcEEEEEEecCChh
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPF------SENY-AP--TTGEQYAVNVVDQPGGNKKTLILQEIPEE 344 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~------~~~~-~~--T~~~~~~~~~v~~~~~~~~~li~d~~g~~ 344 (504)
..+++|.+|||||||+|+|..... +... .+ ||+ ....+.+++| -.++|+||-.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt---~~~l~~l~~g---G~iiDTPGf~ 227 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT---HVELFPLPGG---GWIIDTPGFR 227 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc---eEEEEEcCCC---CEEEeCCCCC
Confidence 578999999999999999997432 1222 11 332 3344666422 2568888863
No 458
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.67 E-value=0.016 Score=59.77 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=62.3
Q ss_pred eEEEEEEcCCCchhhHHHHHHh------cCCCCC----CCCCC-------cc--ceEEEEEEEcC-C-------------
Q 010673 284 VFRCLLFGPQNAGKSALLNSFL------ERPFSE----NYAPT-------TG--EQYAVNVVDQP-G------------- 330 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~------~~~~~~----~~~~T-------~~--~~~~~~~v~~~-~------------- 330 (504)
...|+++|.+||||||++..|. +..... .+.+. .. ..+........ +
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999987 222211 11110 00 00111111110 0
Q ss_pred -CcEEEEEEecCChhhH-----hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECC
Q 010673 331 -GNKKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKD 404 (504)
Q Consensus 331 -~~~~~li~d~~g~~~~-----~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~ 404 (504)
....++++|++|.... ..+.. .......|.+++|+|++....- ......+.+. -.+--+|.||.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~-i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~------~~~~g~IlTKl 249 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQ-VAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS------VDVGSVIITKL 249 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHH-HhhhcCCcEEEEEeccccChhH---HHHHHHHHhc------cCCcEEEEECc
Confidence 1246788999986432 22221 1223467899999998765332 2223333321 23567889999
Q ss_pred CCCC
Q 010673 405 DLKP 408 (504)
Q Consensus 405 Dl~~ 408 (504)
|-..
T Consensus 250 D~~a 253 (429)
T TIGR01425 250 DGHA 253 (429)
T ss_pred cCCC
Confidence 9754
No 459
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.64 E-value=0.035 Score=55.23 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=46.0
Q ss_pred ccccEEEEEEeCCCcccHHH-HHH-HHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCC-CeEEEec
Q 010673 357 ASCDVTIFVYDSSDEYSWKR-TKE-LLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIE-PPIPVSM 433 (504)
Q Consensus 357 ~~ad~iilV~D~s~~~s~~~-~~~-~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa 433 (504)
-.-|.++-|+|+.+-..... +.+ ...++. . .=++|+||+|+.+... .+..+...++++-. +.+.+|.
T Consensus 115 ~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~--------AD~ivlNK~Dlv~~~~-l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 115 VRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-F--------ADVIVLNKTDLVDAEE-LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-h--------CcEEEEecccCCCHHH-HHHHHHHHHHhCCCCeEEEccc
Confidence 34578999999987543222 222 233332 2 2378999999998765 44566666666644 4566666
Q ss_pred cccCHHHHHH
Q 010673 434 KSKDLNNVFS 443 (504)
Q Consensus 434 k~~gi~el~~ 443 (504)
......+++.
T Consensus 185 ~~~~~~~ll~ 194 (323)
T COG0523 185 GDVDLAELLD 194 (323)
T ss_pred cCCCHHHhhc
Confidence 4454444443
No 460
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.62 E-value=0.0026 Score=64.74 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=101.2
Q ss_pred heeeecccccCChhHHHHHhhhccccCCCcccccccCc---------ch---HHHHHHHHHhHhhhcCCC-------CCc
Q 010673 13 TCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT---------LK---PRCVRALKRIFIICDHDM-------DGA 73 (504)
Q Consensus 13 ~~~~csa~~~~~~~~~~~~~~~~~~~p~~pl~~~~~~~---------l~---~~~~~~l~~~F~~~D~d~-------dG~ 73 (504)
.+|.|-+-......+.+-.|+--+ +=++|..++...- +. .-.+...++|+..|...+ =..
T Consensus 153 ~GI~~n~TlvFS~~QA~aaaeAGa-~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASf 231 (391)
T PRK12309 153 EGIHCNLTLLFGFHQAIACAEAGV-TLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASF 231 (391)
T ss_pred CCCceeeeeecCHHHHHHHHHcCC-CEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEeccc
Confidence 367888888888888888888655 4456666654331 10 114556677777776643 123
Q ss_pred cCHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhhhc-----cCCc---C--CCCCCHHhHHHHHH--------------
Q 010673 74 LNDAELNEFQVKCFNAP---LQPAEIVGVKRVVQEKQ-----HDGV---N--DLGLTLSGFLFLHA-------------- 126 (504)
Q Consensus 74 l~~~El~~~~~~~~g~~---~~~~e~~~~~~~~~~~~-----~~~~---~--~~~i~~~~Fl~l~~-------------- 126 (504)
-+..|+.+ +.|.. ++.+-+++|.+.- ... ++.. . .-.++..+|-..+.
T Consensus 232 Rn~~~v~~----laG~d~~Ti~p~ll~~L~~~~-~~~~~~l~~~~~~~~~~~~~~~~e~~f~~~~~~~~ma~ekl~egi~ 306 (391)
T PRK12309 232 RNIGEIIE----LAGCDLLTISPKLLEQLRSTE-AELPRKLDPANAAGMEIEKIHMDRATFDKMHAEDRMASEKLDEGIK 306 (391)
T ss_pred CCHHHHHH----HHCCCeeeCCHHHHHHHHhcC-CCcCcccChhhccccccccCCCCHHHHHHHhccCchHHHHHHHHHH
Confidence 35556544 23554 6777777776632 111 1110 1 12356666654431
Q ss_pred --------------HHHh--cC-Cc--hhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhHHHHHHHhhhhh
Q 010673 127 --------------LFIE--KG-RL--ETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEAVEFLRGIFGLY 186 (504)
Q Consensus 127 --------------~~~~--~~-~~--e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~~~~l~~lf~~~ 186 (504)
..++ .| .. ..+..+|+.||.|++|.|+.+++ . +..+|+.+
T Consensus 307 ~F~~d~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------------~~~~F~~~ 366 (391)
T PRK12309 307 GFSKALETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------------SDAVFDAL 366 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------------HHHHHHHh
Confidence 1111 11 11 45788999999999998886644 2 46789999
Q ss_pred cCCCCCCCCHHHHhhhhcc
Q 010673 187 DIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 187 D~d~dG~l~~~e~~~l~~~ 205 (504)
|.|+||.|+++||..++..
T Consensus 367 D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 367 DLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred CCCCCCCCcHHHHHHHHHH
Confidence 9999999999999887764
No 461
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.58 E-value=0.0066 Score=62.00 Aligned_cols=73 Identities=25% Similarity=0.230 Sum_probs=60.6
Q ss_pred cCcchHHHHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHH
Q 010673 48 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPL---QPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL 124 (504)
Q Consensus 48 ~~~l~~~~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~---~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l 124 (504)
+.++|.++++.|++.|.-.| |++|+++..||.....+. +.+. ..+|+++++..++.+ .+|.++|++|+.+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~g~~~~eei~~~l~~~~~~-----~~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPLGYFVREEIKEILGEVGVD-----ADGRVEFEEFVGI 82 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccccchhHHHHHHHHhccCCC-----cCCccCHHHHHHH
Confidence 67899999999999999999 999999999999987654 4433 488889888888766 3566999999976
Q ss_pred HHH
Q 010673 125 HAL 127 (504)
Q Consensus 125 ~~~ 127 (504)
+..
T Consensus 83 ~~~ 85 (627)
T KOG0046|consen 83 FLN 85 (627)
T ss_pred HHh
Confidence 543
No 462
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.53 E-value=0.021 Score=56.22 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=82.0
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCC---------------CCC---CccceE------------------EEEEE
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---------------YAP---TTGEQY------------------AVNVV 326 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~---------------~~~---T~~~~~------------------~~~~v 326 (504)
-.++|+|+|...+|||||+--|+..+.... ..+ ..+.++ ....+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 457999999999999999988886654210 000 111111 00011
Q ss_pred EcC-CCcEEEEEEecCChhhHhhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCC
Q 010673 327 DQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDD 405 (504)
Q Consensus 327 ~~~-~~~~~~li~d~~g~~~~~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~D 405 (504)
.+. +....+.++|-+|++.+-.-.---..-.-.|..++++-++-.- .--.++.+...... ++|+++|.+|+|
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL------~VPVfvVVTKID 284 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL------HVPVFVVVTKID 284 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh------cCcEEEEEEeec
Confidence 111 1223445678888876632110000113457777777654321 11112223333322 799999999999
Q ss_pred CCCCccchHHHHHH---HHHhC-------------------------CCCeEEEeccc-cCHHHHHH
Q 010673 406 LKPYTMAVQDSARV---TQELG-------------------------IEPPIPVSMKS-KDLNNVFS 443 (504)
Q Consensus 406 l~~~~~~~~~~~~~---~~~~~-------------------------~~~~~~vSak~-~gi~el~~ 443 (504)
........+.++.+ .+..+ +.++|.+|..+ +|+.-|..
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 98766544433333 22211 11478899999 88765443
No 463
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.005 Score=61.17 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=72.1
Q ss_pred HHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHHHHHhcCCc
Q 010673 55 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL 134 (504)
Q Consensus 55 ~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~~~~~~~~~ 134 (504)
-...|.++|...|.|+||.|+..|+...++. +|.++++++.+.+++.++++ ++..|+++||-.-+..+- ..+.
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~-~gi~l~de~~~k~~e~~d~~-----g~~~I~~~e~rd~~ll~p-~s~i 152 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKD-LGIQLSDEKAAKFFEHMDKD-----GKATIDLEEWRDHLLLYP-ESDL 152 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHH-hCCccCHHHHHHHHHHhccC-----CCeeeccHHHHhhhhcCC-hhHH
Confidence 3467889999999999999999999999885 59999999999999999887 566799999865444322 1222
Q ss_pred hh---HHHHHHhhcCCCCccccCCCC
Q 010673 135 ET---TWAVLRKFGYGDDLELRDDFL 157 (504)
Q Consensus 135 e~---~~~~~~~f~~d~~~~i~~~~l 157 (504)
++ -|.-+-.+|...+..|.+++.
T Consensus 153 ~di~~~W~h~~~idigE~~~iPdg~s 178 (463)
T KOG0036|consen 153 EDIYDFWRHVLLIDIGEDAVLPDGDS 178 (463)
T ss_pred HHHHHhhhhheEEEccccccCCcchH
Confidence 22 355555567766666665443
No 464
>PRK00098 GTPase RsgA; Reviewed
Probab=96.50 E-value=0.005 Score=60.92 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcCCC
Q 010673 286 RCLLFGPQNAGKSALLNSFLERPF 309 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~~ 309 (504)
.++++|.+|||||||+|+|++...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 689999999999999999998654
No 465
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.48 E-value=0.0011 Score=47.93 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccChhH-HHHHHHhhhhhcCCCCCCCCHHHHhhhh
Q 010673 137 TWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELASEA-VEFLRGIFGLYDIDNDGAVRPAELEDLF 203 (504)
Q Consensus 137 ~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~~~~-~~~l~~lf~~~D~d~dG~l~~~e~~~l~ 203 (504)
+..+|..+|.|++|.|+.+++ . .+ ..++... .+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~-~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKA-AL-------KSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH-HH-------HHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 456788888888888887777 4 22 1111111 2567789999999999999999998765
No 466
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.46 E-value=0.032 Score=55.61 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=76.1
Q ss_pred ceEEEEEEcCCCchhhHHHHHHhcCCCCCC------CCCCcc-------------ceEEEEEEEcC--------------
Q 010673 283 NVFRCLLFGPQNAGKSALLNSFLERPFSEN------YAPTTG-------------EQYAVNVVDQP-------------- 329 (504)
Q Consensus 283 ~~~kI~vvG~~~vGKSSLin~l~~~~~~~~------~~~T~~-------------~~~~~~~v~~~-------------- 329 (504)
.+-.++++|++|+||||++..|...-.... ...+.+ ..+........
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998874311100 000100 00111000000
Q ss_pred -CCcEEEEEEecCChhhH-----hhhhhhhhh-----cccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEE
Q 010673 330 -GGNKKTLILQEIPEEGV-----KKILSNKEA-----LASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCL 398 (504)
Q Consensus 330 -~~~~~~li~d~~g~~~~-----~~~~~~~~~-----~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~pii 398 (504)
.....++++|++|.... ..+...... -...+.+++|.|++... ..+.. .....+. -.+.-
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~------~~~~g 263 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA------VGLTG 263 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh------CCCCE
Confidence 02245778999987321 122111111 13467889999998542 22222 1222211 23557
Q ss_pred EEEECCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 399 LIASKDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 399 lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
+|.||.|....- -.+-.++...++| +..++ + ++++++
T Consensus 264 iIlTKlD~t~~~---G~~l~~~~~~~~P-i~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAKG---GVVFAIADELGIP-IKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCCc---cHHHHHHHHHCCC-EEEEe--CCCChhhC
Confidence 899999954321 2455566777887 66666 4 666554
No 467
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.38 E-value=0.0064 Score=61.93 Aligned_cols=53 Identities=21% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 55 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 55 ~~~~l~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
+...++.+|+.||.|+||.|+.+|+.. .+.++..+|.+ ++|.|++++|...++
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d-----~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLN-----HDGKITPEEMRAGLG 384 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCC-----CCCCCcHHHHHHHHH
Confidence 456789999999999999999999831 47788888877 567799999987665
No 468
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.0064 Score=69.48 Aligned_cols=137 Identities=17% Similarity=0.155 Sum_probs=67.9
Q ss_pred HHHhhhhhhhhhhhcccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC----CCCccceEEEEEEEcCCCcEEEEEEec
Q 010673 265 LRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENY----APTTGEQYAVNVVDQPGGNKKTLILQE 340 (504)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~T~~~~~~~~~v~~~~~~~~~li~d~ 340 (504)
+...++++..+.+.+.....+=-+|||++|+||||++..- +.+|.... .++.... ...++.- -....++||+
T Consensus 106 ~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g--T~~cdww-f~deaVlIDt 181 (1188)
T COG3523 106 LRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG--TRNCDWW-FTDEAVLIDT 181 (1188)
T ss_pred HHHHHHHHhcCcccchhhcCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC--CcccCcc-cccceEEEcC
Confidence 3333333333333344455566799999999999998754 33332211 0111110 0001111 0122334554
Q ss_pred CChh--------hHhhhh-------hhhhhcccccEEEEEEeCCCcccH--HH-------HHHHHHHHHHhccCCCCCCc
Q 010673 341 IPEE--------GVKKIL-------SNKEALASCDVTIFVYDSSDEYSW--KR-------TKELLVEVARLGEDSGYGVP 396 (504)
Q Consensus 341 ~g~~--------~~~~~~-------~~~~~~~~ad~iilV~D~s~~~s~--~~-------~~~~~~~l~~~~~~~~~~~p 396 (504)
.|.. .....| ......+-.|+||+.+|+++--+- .. +..-+.++...- .-..|
T Consensus 182 aGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL---~~~~P 258 (1188)
T COG3523 182 AGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL---HARLP 258 (1188)
T ss_pred CcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh---ccCCc
Confidence 4421 111112 123344668999999998764221 11 122233333321 34799
Q ss_pred EEEEEECCCCCC
Q 010673 397 CLLIASKDDLKP 408 (504)
Q Consensus 397 iilV~NK~Dl~~ 408 (504)
+.+++||.|+..
T Consensus 259 VYl~lTk~Dll~ 270 (1188)
T COG3523 259 VYLVLTKADLLP 270 (1188)
T ss_pred eEEEEecccccc
Confidence 999999999864
No 469
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.014 Score=54.34 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=71.1
Q ss_pred eEEEEEEcCCCc--hhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEE----EEEecCChhhHhhhhhhhhhcc
Q 010673 284 VFRCLLFGPQNA--GKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKT----LILQEIPEEGVKKILSNKEALA 357 (504)
Q Consensus 284 ~~kI~vvG~~~v--GKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~----li~d~~g~~~~~~~~~~~~~~~ 357 (504)
.+-++|+|-+|| ||-+|+.+|....|...........+. .+.++ .+.+. +-+...-.+. ...+.....
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid-~kyysadi~lcishicde~---~lpn~~~a~ 77 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTID-NKYYSADINLCISHICDEK---FLPNAEIAE 77 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEec-ceeeecceeEEeecccchh---ccCCccccc
Confidence 345789999999 999999999988875544332222222 23333 11111 1111121211 122223334
Q ss_pred cccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccc
Q 010673 358 SCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMA 412 (504)
Q Consensus 358 ~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~ 412 (504)
...++++|||.+....+..+..|+....-+ . ---++.++||.|.+...-.
T Consensus 78 pl~a~vmvfdlse~s~l~alqdwl~htdin----s-fdillcignkvdrvphhla 127 (418)
T KOG4273|consen 78 PLQAFVMVFDLSEKSGLDALQDWLPHTDIN----S-FDILLCIGNKVDRVPHHLA 127 (418)
T ss_pred ceeeEEEEEeccchhhhHHHHhhccccccc----c-chhheecccccccccchhh
Confidence 567899999999999999999998754322 1 1235778999998765433
No 470
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.34 E-value=0.065 Score=52.21 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=51.7
Q ss_pred EEEEEEecCChhhHh-----hhhhhhhhc-----ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEE
Q 010673 333 KKTLILQEIPEEGVK-----KILSNKEAL-----ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIAS 402 (504)
Q Consensus 333 ~~~li~d~~g~~~~~-----~~~~~~~~~-----~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~N 402 (504)
..++++|++|..... .+....... ..+|.+++|+|++.. .+.+. ....+.+. -.+--+|.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~------~~~~g~IlT 225 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEA------VGLTGIILT 225 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhh------CCCCEEEEE
Confidence 456789999874321 111111111 238999999999753 22322 22333221 124578999
Q ss_pred CCCCCCCccchHHHHHHHHHhCCCCeEEEeccc-cCHHHH
Q 010673 403 KDDLKPYTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNV 441 (504)
Q Consensus 403 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el 441 (504)
|.|....-- .+-.+....+.| +..++ + ++++++
T Consensus 226 KlDe~~~~G---~~l~~~~~~~~P-i~~~~--~Gq~~~dl 259 (272)
T TIGR00064 226 KLDGTAKGG---IILSIAYELKLP-IKFIG--VGEKIDDL 259 (272)
T ss_pred ccCCCCCcc---HHHHHHHHHCcC-EEEEe--CCCChHhC
Confidence 999755322 344555666776 55555 4 556554
No 471
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.30 E-value=0.0092 Score=58.71 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCC
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPF 309 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~ 309 (504)
-.++++|++|||||||+|.|++...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 3699999999999999999998654
No 472
>PRK14974 cell division protein FtsY; Provisional
Probab=96.30 E-value=0.065 Score=53.71 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=52.1
Q ss_pred EEEEEecCChhhH-----hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCC
Q 010673 334 KTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKP 408 (504)
Q Consensus 334 ~~li~d~~g~~~~-----~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~ 408 (504)
.++++|++|.... ..+.. .....+.|.+++|.|++.... .......+.+. -.+--+|.||.|...
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL~~-i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~------~~~~giIlTKlD~~~ 293 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDELKK-IVRVTKPDLVIFVGDALAGND---AVEQAREFNEA------VGIDGVILTKVDADA 293 (336)
T ss_pred CEEEEECCCccCCcHHHHHHHHH-HHHhhCCceEEEeeccccchh---HHHHHHHHHhc------CCCCEEEEeeecCCC
Confidence 4778999987421 22211 112246789999999876432 22222222221 123568899999754
Q ss_pred CccchHHHHHHHHHhCCCCeEEEeccc-cCHHHHH
Q 010673 409 YTMAVQDSARVTQELGIEPPIPVSMKS-KDLNNVF 442 (504)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~vSak~-~gi~el~ 442 (504)
.-- .+-.++...+.| +..++ + ++++++.
T Consensus 294 ~~G---~~ls~~~~~~~P-i~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 294 KGG---AALSIAYVIGKP-ILFLG--VGQGYDDLI 322 (336)
T ss_pred Ccc---HHHHHHHHHCcC-EEEEe--CCCChhhcc
Confidence 322 344455566776 66665 5 7776653
No 473
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.27 E-value=0.009 Score=59.71 Aligned_cols=114 Identities=25% Similarity=0.272 Sum_probs=73.8
Q ss_pred hhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEEEe
Q 010673 353 KEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
.+.+..+|+|+.|+|+.+|.+-.. ..+..+. .+.|.++|+||+|+.......+..+.+.++.+.. .+.+|
T Consensus 29 ~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v-------~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~-~~~v~ 98 (322)
T COG1161 29 KEVLKSVDVVVEVVDARDPLGTRN--PELERIV-------KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIK-PIFVS 98 (322)
T ss_pred HHhcccCCEEEEEEeccccccccC--ccHHHHH-------ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCc-cEEEE
Confidence 567889999999999999966432 1122222 2566699999999998766555666777666655 78888
Q ss_pred ccc-cCHHHHHH--------HHHHHHhC------CCCCCCCcccccchhhHHhhhcchh
Q 010673 433 MKS-KDLNNVFS--------RIIWAAEH------PHLNIPETETGRNRKRYRHLVNSSL 476 (504)
Q Consensus 433 ak~-~gi~el~~--------~l~~~~~~------~~~~~~~~~~~~~~~~~~~l~~r~~ 476 (504)
+++ .+...+.. .+.+.... .....-+.++...+...++|.++..
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 99 AKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 888 66555552 22222221 1122334566666777788777764
No 474
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.26 E-value=0.014 Score=58.12 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=51.8
Q ss_pred hhhcccccEEEEEEeCCCcccH--HHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHHhCCCCeEE
Q 010673 353 KEALASCDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQELGIEPPIP 430 (504)
Q Consensus 353 ~~~~~~ad~iilV~D~s~~~s~--~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 430 (504)
...+..+|+||.|.|+.||.+- ..+++|+.+. ..+...|+|+||+|+...+...+.+..|.++..-. .|.
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv-~fk 212 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTV-AFK 212 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcc-eee
Confidence 4567889999999999999663 3445554332 23589999999999998666555666666665543 444
Q ss_pred Eeccc
Q 010673 431 VSMKS 435 (504)
Q Consensus 431 vSak~ 435 (504)
.|...
T Consensus 213 ast~~ 217 (435)
T KOG2484|consen 213 ASTQM 217 (435)
T ss_pred ccccc
Confidence 55443
No 475
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.26 E-value=0.012 Score=58.78 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=53.4
Q ss_pred HHHHHhHhhhcCCCCCccCHHHHHHHHH---HHcCCCCCHHHHHHHHHHhhhhccCCcCCCCCCHHhHHHHHH
Q 010673 57 RALKRIFIICDHDMDGALNDAELNEFQV---KCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA 126 (504)
Q Consensus 57 ~~l~~~F~~~D~d~dG~l~~~El~~~~~---~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~Fl~l~~ 126 (504)
..|.-||++.|.|+.|.||.+|+...-. .-...+++++++.++.+.+|-+ .+|.|++.|||....
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~N-----kDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLN-----KDGKIDLNEFLEAFR 614 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccC-----CCCcccHHHHHHHHh
Confidence 4577899999999999999999987533 3345689999999999999877 467799999985543
No 476
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.25 E-value=0.0035 Score=62.31 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=39.4
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCCh
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g~ 343 (504)
..++-+++.|+|.|||||||+||+|........- ++.+.+-..+.+.++ ..+-++|.+|.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheecc---CCceeccCCce
Confidence 3577899999999999999999999988764332 222222233445555 23345555554
No 477
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.21 E-value=0.079 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcC
Q 010673 285 FRCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~ 307 (504)
.-.+|.|.-|+|||||+|+++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34678899999999999999864
No 478
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.20 E-value=0.11 Score=46.67 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=45.2
Q ss_pred EEEEEEecCChhhH-----hhhhhhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 333 KKTLILQEIPEEGV-----KKILSNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 333 ~~~li~d~~g~~~~-----~~~~~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
..++++|++|.... ..+.. .......|.+++|+|.....+ .......+.+. . + ..-+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~-l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~----~-~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKK-IKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA----L-G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHH-HHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh----C-C-CCEEEEECCcCC
Confidence 34667888886321 22211 122245899999999865432 22344444322 1 2 356778999976
Q ss_pred CCccchHHHHHHHHHhCCC
Q 010673 408 PYTMAVQDSARVTQELGIE 426 (504)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~ 426 (504)
.... ..-+.+...++|
T Consensus 153 ~~~g---~~~~~~~~~~~p 168 (173)
T cd03115 153 ARGG---AALSIRAVTGKP 168 (173)
T ss_pred CCcc---hhhhhHHHHCcC
Confidence 5322 233377777776
No 479
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.036 Score=56.21 Aligned_cols=143 Identities=14% Similarity=0.098 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCchhhHHHHHHhcCCC---C--CC-C--CCCcc----c---------eEEEEEEEcCC---------CcE
Q 010673 284 VFRCLLFGPQNAGKSALLNSFLERPF---S--EN-Y--APTTG----E---------QYAVNVVDQPG---------GNK 333 (504)
Q Consensus 284 ~~kI~vvG~~~vGKSSLin~l~~~~~---~--~~-~--~~T~~----~---------~~~~~~v~~~~---------~~~ 333 (504)
.-.++++|++||||||++.+|...-. . .. . ..+.+ . .+....+...+ ...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 34688999999999999999975321 0 00 0 00100 0 00111111100 123
Q ss_pred EEEEEecCChhhHhh-hhhhhhhc---ccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCC--CcEEEEEECCCCC
Q 010673 334 KTLILQEIPEEGVKK-ILSNKEAL---ASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYG--VPCLLIASKDDLK 407 (504)
Q Consensus 334 ~~li~d~~g~~~~~~-~~~~~~~~---~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~--~piilV~NK~Dl~ 407 (504)
.++++|++|...... +......+ ..+.-.++|++++... +.+...+..+.......... .+-=+|.||.|-.
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 567799998643211 11112222 3345668999987642 22333333333220000000 1235778999965
Q ss_pred CCccchHHHHHHHHHhCCCCeEEEe
Q 010673 408 PYTMAVQDSARVTQELGIEPPIPVS 432 (504)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~vS 432 (504)
..- -.+-.++...++| +..++
T Consensus 295 ~~~---G~~l~~~~~~~lP-i~yvt 315 (374)
T PRK14722 295 SNL---GGVLDTVIRYKLP-VHYVS 315 (374)
T ss_pred CCc---cHHHHHHHHHCcC-eEEEe
Confidence 421 2456677777877 44444
No 480
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.14 E-value=0.0042 Score=49.39 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=45.3
Q ss_pred hHHHHHHhhcCC--CCccccCCCC-CCCCCCCCCCccccChhH-----HHHHHHhhhhhcCCCCCCCCHHHHhhhhcc
Q 010673 136 TTWAVLRKFGYG--DDLELRDDFL-PVPTKLSPDQSVELASEA-----VEFLRGIFGLYDIDNDGAVRPAELEDLFLT 205 (504)
Q Consensus 136 ~~~~~~~~f~~d--~~~~i~~~~l-~~~~~~~~~~~~~l~~~~-----~~~l~~lf~~~D~d~dG~l~~~e~~~l~~~ 205 (504)
.+..+|+.+... +++.|+.++| . .+.. .++... .+++.+||+.+|.|+||.|+++||..++..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~-ll~~------~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQ-LVEK------ELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHH-HHHH------HhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 466677777644 3678888888 5 3311 122211 377899999999999999999999988764
No 481
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.021 Score=53.08 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=86.2
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCCCCCCC---CCCccceEEEEEEEcCCCcEEEEEEecCChhhH-hhhhhhhhhccccc
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERPFSENY---APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCD 360 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~~~~~~---~~T~~~~~~~~~v~~~~~~~~~li~d~~g~~~~-~~~~~~~~~~~~ad 360 (504)
.+|+++|...+||||+-+-...+-.+... ..|... .. -.+.+.-..+.+|+-+|+-.+ ..-......++.+-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski--~~--d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKI--TR--DHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcc--cH--hhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 56999999999999997766554332211 111111 00 001111123446777776433 22222234668999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchH-------HHHHHHHHhCCC----CeE
Q 010673 361 VTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQ-------DSARVTQELGIE----PPI 429 (504)
Q Consensus 361 ~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------~~~~~~~~~~~~----~~~ 429 (504)
++++|+|+.+. -.+.+..+...+.+. ..-.+++.+=+...|.|-..+.-..+ ...+-....|+. .++
T Consensus 104 ALifvIDaQdd-y~eala~L~~~v~ra-ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~ 181 (347)
T KOG3887|consen 104 ALIFVIDAQDD-YMEALARLHMTVERA-YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFY 181 (347)
T ss_pred eEEEEEechHH-HHHHHHHHHHHhhhe-eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEE
Confidence 99999998763 222233332222221 11145778888999999765432221 111112223332 245
Q ss_pred EEeccccCHHHHHHHHHHHHh
Q 010673 430 PVSMKSKDLNNVFSRIIWAAE 450 (504)
Q Consensus 430 ~vSak~~gi~el~~~l~~~~~ 450 (504)
.+|-....|-|.|..+.+.+.
T Consensus 182 LTSIyDHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 182 LTSIYDHSIFEAFSKVVQKLI 202 (347)
T ss_pred EeeecchHHHHHHHHHHHHHh
Confidence 566555888888888887764
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.04 E-value=0.074 Score=48.26 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERP 308 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~ 308 (504)
...=.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 334478999999999999999998864
No 483
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.00 E-value=0.0095 Score=57.60 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=38.9
Q ss_pred cccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCC----CCCccceEEEEE-EEcCCCcEEEEEEecCCh
Q 010673 279 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENY----APTTGEQYAVNV-VDQPGGNKKTLILQEIPE 343 (504)
Q Consensus 279 ~~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~----~~T~~~~~~~~~-v~~~~~~~~~li~d~~g~ 343 (504)
++....+.+.|+|-||||||||+|++......... .+-.+++..+.. +.+. ...-..++|++|.
T Consensus 138 rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 138 RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 34667899999999999999999998754432211 111222222221 4444 3344556788876
No 484
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.81 E-value=0.0094 Score=35.34 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.7
Q ss_pred HHHHhHhhhcCCCCCccCHHHHHHHHH
Q 010673 58 ALKRIFIICDHDMDGALNDAELNEFQV 84 (504)
Q Consensus 58 ~l~~~F~~~D~d~dG~l~~~El~~~~~ 84 (504)
+++++|..+|.|++|.|+..|+..+++
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 368899999999999999999977654
No 485
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.76 E-value=0.072 Score=49.30 Aligned_cols=143 Identities=23% Similarity=0.179 Sum_probs=80.5
Q ss_pred HHhHhhhcCCCCCccCHHHHHHHHHHHcCCCCCHHHHHHH------------HHHhhhhcc--CCcC-----CCCCCHHh
Q 010673 60 KRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV------------KRVVQEKQH--DGVN-----DLGLTLSG 120 (504)
Q Consensus 60 ~~~F~~~D~d~dG~l~~~El~~~~~~~~g~~~~~~e~~~~------------~~~~~~~~~--~~~~-----~~~i~~~~ 120 (504)
+--|+..|.||||.++-+|..--..+.-|. ++.|...- .+.+..+.. .+.. +--+|-++
T Consensus 143 kthFraVDpdgDGhvsWdEykvkFlaskgh--sekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeE 220 (362)
T KOG4251|consen 143 KTHFRAVDPDGDGHVSWDEYKVKFLASKGH--SEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEE 220 (362)
T ss_pred hhheeeeCCCCCCceehhhhhhHHHhhcCc--chHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHH
Confidence 446999999999999999986532322232 22222110 111111110 1111 22367899
Q ss_pred HH-HHHHHHHhcCCchhHHHHHHhhcCCCCccccCCCC-CCCCCCCCCCccccC-----hhH-HHHHHHhhhhhcCCCCC
Q 010673 121 FL-FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFL-PVPTKLSPDQSVELA-----SEA-VEFLRGIFGLYDIDNDG 192 (504)
Q Consensus 121 Fl-~l~~~~~~~~~~e~~~~~~~~f~~d~~~~i~~~~l-~~~~~~~~~~~~~l~-----~~~-~~~l~~lf~~~D~d~dG 192 (504)
|+ +||-.+-..+-..-+.++.+.+|.|||-.++..++ . .+++..-++. ..- ..-..+.=+..|.+.||
T Consensus 221 flsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFis----lpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDG 296 (362)
T KOG4251|consen 221 FLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFIS----LPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDG 296 (362)
T ss_pred HHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhc----CCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCcc
Confidence 98 55543333333356889999999999999997766 3 1111111121 111 12223333456999999
Q ss_pred CCCHHHHhhhhccCCCCC
Q 010673 193 AVRPAELEDLFLTAPESP 210 (504)
Q Consensus 193 ~l~~~e~~~l~~~~p~~p 210 (504)
.++++|+.+. +.|..+
T Consensus 297 ivTaeELe~y--~dP~n~ 312 (362)
T KOG4251|consen 297 IVTAEELEDY--VDPQNF 312 (362)
T ss_pred ceeHHHHHhh--cCchhh
Confidence 9999999876 555444
No 486
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.74 E-value=0.0076 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhhHHHHHHhcC
Q 010673 286 RCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~ 307 (504)
.|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 487
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.72 E-value=0.0041 Score=61.65 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=0.0
Q ss_pred ccCceEEEEEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcCCCcEEEEEEecCC
Q 010673 280 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 342 (504)
Q Consensus 280 ~~~~~~kI~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~~~~~~~li~d~~g 342 (504)
..+..+-|.+||.||+||||+||.|-..++..+. |-.+.+-....+.+- ..++++|.+|
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLm---krIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLM---KRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHH---hceeEecCCC
No 488
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.0076 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhhHHHHHHhcCC
Q 010673 286 RCLLFGPQNAGKSALLNSFLERP 308 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~~ 308 (504)
-|+|+|++|||||||+|-+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998754
No 489
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.65 E-value=0.0073 Score=42.97 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.6
Q ss_pred HHHHHhhhhhcCCCCCCCCHHHHhhhhc
Q 010673 177 EFLRGIFGLYDIDNDGAVRPAELEDLFL 204 (504)
Q Consensus 177 ~~l~~lf~~~D~d~dG~l~~~e~~~l~~ 204 (504)
+++..||+.+|.|++|.|+++||..+|.
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5588999999999999999999998874
No 490
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.65 E-value=0.019 Score=59.00 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=55.4
Q ss_pred hHhhhhhhhhhcccccEEEEEEeCCCcccH--HHHHHHHHHHHHhccCCCCCCcEEEEEECCCCCCCccchHHHHHHHHH
Q 010673 345 GVKKILSNKEALASCDVTIFVYDSSDEYSW--KRTKELLVEVARLGEDSGYGVPCLLIASKDDLKPYTMAVQDSARVTQE 422 (504)
Q Consensus 345 ~~~~~~~~~~~~~~ad~iilV~D~s~~~s~--~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 422 (504)
..+.+|+ .+..+|+||.++|+.+|--| .++..++.++ .+.+..+++.||+||....+.....+.|.+.
T Consensus 164 ~WRQLWR---VlErSDivvqIVDARnPllfr~~dLe~Yvke~-------d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ 233 (562)
T KOG1424|consen 164 IWRQLWR---VLERSDIVVQIVDARNPLLFRSPDLEDYVKEV-------DPSKANVLLVNKADLLPPEQRVAWAEYFRQN 233 (562)
T ss_pred HHHHHHH---HHhhcceEEEEeecCCccccCChhHHHHHhcc-------ccccceEEEEehhhcCCHHHHHHHHHHHHhc
Confidence 4466654 67899999999999999665 3445554444 3457889999999999876655544444433
Q ss_pred hCCCCeEEEeccc
Q 010673 423 LGIEPPIPVSMKS 435 (504)
Q Consensus 423 ~~~~~~~~vSak~ 435 (504)
+++ ++.-||..
T Consensus 234 -ni~-~vf~SA~~ 244 (562)
T KOG1424|consen 234 -NIP-VVFFSALA 244 (562)
T ss_pred -Cce-EEEEeccc
Confidence 465 77777764
No 491
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.44 E-value=0.098 Score=45.38 Aligned_cols=103 Identities=12% Similarity=0.094 Sum_probs=59.5
Q ss_pred EEEcCCCchhhHHHHHHhcCCCCCCCCCCccceEEEEEEEcC--CC--cEEEEEEecCChhhHhhhhhhhhhcccccEEE
Q 010673 288 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GG--NKKTLILQEIPEEGVKKILSNKEALASCDVTI 363 (504)
Q Consensus 288 ~vvG~~~vGKSSLin~l~~~~~~~~~~~T~~~~~~~~~v~~~--~~--~~~~li~d~~g~~~~~~~~~~~~~~~~ad~ii 363 (504)
+.-|.+|+|||++.-.+...-... +.... .++.+ .+ ...++++|.++...... ...+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~------~~~~~--~vd~D~~~~~~~yd~VIiD~p~~~~~~~----~~~l~~aD~vv 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL------GKRVL--LLDADLGLANLDYDYIIIDTGAGISDNV----LDFFLAADEVI 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC------CCcEE--EEECCCCCCCCCCCEEEEECCCCCCHHH----HHHHHhCCeEE
Confidence 455689999999866665321100 00000 01111 00 03467788877532221 34678899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhccCCCCCCcEEEEEECCCCC
Q 010673 364 FVYDSSDEYSWKRTKELLVEVARLGEDSGYGVPCLLIASKDDLK 407 (504)
Q Consensus 364 lV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~piilV~NK~Dl~ 407 (504)
++.+.+ ..++......++.+... ....++.+|.|+.+..
T Consensus 72 iv~~~~-~~s~~~~~~~l~~l~~~----~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 72 VVTTPE-PTSITDAYALIKKLAKQ----LRVLNFRVVVNRAESP 110 (139)
T ss_pred EEcCCC-hhHHHHHHHHHHHHHHh----cCCCCEEEEEeCCCCH
Confidence 999975 44555555556665543 2356788999999743
No 492
>PRK08118 topology modulation protein; Reviewed
Probab=95.35 E-value=0.012 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchhhHHHHHHhcC
Q 010673 285 FRCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~ 307 (504)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 493
>PRK07261 topology modulation protein; Provisional
Probab=95.27 E-value=0.013 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcC
Q 010673 286 RCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~ 307 (504)
+|+|+|.+|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 494
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.26 E-value=0.13 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchhhHHHHHHhcCC
Q 010673 285 FRCLLFGPQNAGKSALLNSFLERP 308 (504)
Q Consensus 285 ~kI~vvG~~~vGKSSLin~l~~~~ 308 (504)
=.++|+|++|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999998864
No 495
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.24 E-value=0.012 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcC
Q 010673 286 RCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~ 307 (504)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999876
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.21 E-value=0.017 Score=42.37 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.6
Q ss_pred EEEEEcCCCchhhHHHHHHhc
Q 010673 286 RCLLFGPQNAGKSALLNSFLE 306 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~ 306 (504)
..+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988763
No 497
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.17 E-value=0.067 Score=55.56 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=44.4
Q ss_pred EEEEEecCChhhHh-hhh---hhhhhcccccEEEEEEeCCCcccHHHHHHHHHHHHHhccCCCCCCc-EEEEEECCCCCC
Q 010673 334 KTLILQEIPEEGVK-KIL---SNKEALASCDVTIFVYDSSDEYSWKRTKELLVEVARLGEDSGYGVP-CLLIASKDDLKP 408 (504)
Q Consensus 334 ~~li~d~~g~~~~~-~~~---~~~~~~~~ad~iilV~D~s~~~s~~~~~~~~~~l~~~~~~~~~~~p-iilV~NK~Dl~~ 408 (504)
.++++|++|..... .+. .....+..+|.+++|+|++... +.......+.. ..+ --+|.||.|-..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-------~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-------AVGIGGIIITKLDGTA 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-------cCCCCEEEEecccCCC
Confidence 56789999864321 111 1123345789999999987652 22233333321 233 357889999654
Q ss_pred CccchHHHHHHHHHhCCC
Q 010673 409 YTMAVQDSARVTQELGIE 426 (504)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~ 426 (504)
.- -.+-.++...+.|
T Consensus 247 ~~---G~~ls~~~~~~~P 261 (437)
T PRK00771 247 KG---GGALSAVAETGAP 261 (437)
T ss_pred cc---cHHHHHHHHHCcC
Confidence 22 1344555566665
No 498
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.013 Score=53.25 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=21.0
Q ss_pred EEEEEcCCCchhhHHHHHHhcC
Q 010673 286 RCLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 286 kI~vvG~~~vGKSSLin~l~~~ 307 (504)
+|+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999987
No 499
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.15 E-value=0.014 Score=50.59 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEEcCCCchhhHHHHHHhcC
Q 010673 287 CLLFGPQNAGKSALLNSFLER 307 (504)
Q Consensus 287 I~vvG~~~vGKSSLin~l~~~ 307 (504)
|+++|.||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
No 500
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.14 E-value=0.25 Score=44.16 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=22.9
Q ss_pred CceEEEEEEcCCCchhhHHHHHHhcCC
Q 010673 282 RNVFRCLLFGPQNAGKSALLNSFLERP 308 (504)
Q Consensus 282 ~~~~kI~vvG~~~vGKSSLin~l~~~~ 308 (504)
...=.++++|++|+|||||++.+.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344478999999999999999998864
Done!