Query 010675
Match_columns 504
No_of_seqs 359 out of 1301
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 99.9 1E-26 2.2E-31 209.2 14.7 125 61-186 1-127 (127)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 1.2E-21 2.7E-26 181.5 16.0 122 52-181 21-142 (153)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.9 9.6E-22 2.1E-26 176.6 13.5 118 57-186 2-126 (126)
4 cd02122 PA_GRAIL_like PA _GRAI 99.9 1.7E-21 3.7E-26 177.7 14.2 118 57-186 17-138 (138)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 2.2E-21 4.7E-26 172.5 14.2 114 61-187 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.9 7.9E-21 1.7E-25 173.5 14.8 121 52-186 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 4.2E-19 9.1E-24 157.6 11.5 106 57-178 5-111 (117)
8 cd04816 PA_SaNapH_like PA_SaNa 99.8 8.2E-18 1.8E-22 150.0 14.2 114 61-186 7-122 (122)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.7 8.5E-18 1.8E-22 149.5 11.9 95 74-182 23-118 (120)
10 cd02130 PA_ScAPY_like PA_ScAPY 99.7 2.5E-17 5.3E-22 146.8 13.7 115 54-186 8-122 (122)
11 cd04818 PA_subtilisin_1 PA_sub 99.7 3.3E-17 7.1E-22 145.0 13.8 113 59-186 2-118 (118)
12 KOG3920 Uncharacterized conser 99.7 7.1E-18 1.5E-22 153.3 6.4 134 42-188 34-173 (193)
13 KOG4628 Predicted E3 ubiquitin 99.6 1.6E-15 3.5E-20 155.6 13.7 116 54-180 35-151 (348)
14 cd02124 PA_PoS1_like PA_PoS1_l 99.6 3.9E-15 8.5E-20 134.4 12.8 91 79-186 38-129 (129)
15 cd04817 PA_VapT_like PA_VapT_l 99.6 7.1E-15 1.5E-19 134.2 13.3 104 62-182 27-137 (139)
16 PF02225 PA: PA domain; Inter 99.5 3.7E-14 8E-19 120.8 7.3 97 67-176 2-101 (101)
17 cd00538 PA PA: Protease-associ 99.5 3.3E-13 7.2E-18 119.1 10.7 99 80-186 28-126 (126)
18 cd02133 PA_C5a_like PA_C5a_lik 99.4 4.7E-12 1E-16 115.9 14.3 100 60-178 15-114 (143)
19 KOG2442 Uncharacterized conser 99.4 2.3E-12 5.1E-17 135.3 11.6 133 44-189 40-178 (541)
20 cd04819 PA_2 PA_2: Protease-as 99.3 1.8E-11 3.9E-16 110.2 13.6 104 69-185 21-126 (127)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 1.5E-11 3.2E-16 111.8 8.6 107 62-186 8-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.0 1.3E-09 2.8E-14 96.9 9.9 84 81-181 36-121 (126)
23 cd02128 PA_TfR PA_TfR: Proteas 99.0 3.8E-09 8.2E-14 100.7 11.4 118 56-178 14-155 (183)
24 cd02121 PA_GCPII_like PA_GCPII 98.5 1.2E-06 2.6E-11 86.1 10.9 123 69-204 43-207 (220)
25 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 9E-06 1.9E-10 75.6 11.7 96 69-178 18-134 (151)
26 cd04814 PA_M28_1 PA_M28_1: Pro 98.1 7.3E-06 1.6E-10 75.4 8.1 73 56-135 8-100 (142)
27 cd02131 PA_hNAALADL2_like PA_h 98.1 1.2E-05 2.7E-10 74.2 8.8 103 68-178 12-139 (153)
28 PF14670 FXa_inhibition: Coagu 98.1 1.4E-06 3E-11 61.7 1.6 36 428-473 1-36 (36)
29 cd04820 PA_M28_1_1 PA_M28_1_1: 98.0 2.1E-05 4.6E-10 71.9 8.2 63 68-135 19-96 (137)
30 PF12947 EGF_3: EGF domain; I 97.8 1.1E-05 2.3E-10 57.2 1.7 36 428-473 1-36 (36)
31 PF12662 cEGF: Complement Clr- 97.6 3.2E-05 6.8E-10 49.9 1.4 24 452-478 1-24 (24)
32 PF07645 EGF_CA: Calcium-bindi 96.9 0.00038 8.3E-09 50.6 1.5 34 424-466 1-34 (42)
33 cd03023 DsbA_Com1_like DsbA fa 96.9 0.037 7.9E-07 49.5 14.2 86 309-405 68-153 (154)
34 PF13462 Thioredoxin_4: Thiore 96.1 0.13 2.9E-06 46.6 12.8 152 194-405 9-160 (162)
35 smart00179 EGF_CA Calcium-bind 95.1 0.013 2.8E-07 40.7 1.7 38 425-474 2-39 (39)
36 KOG1219 Uncharacterized conser 95.1 0.03 6.5E-07 69.1 5.6 51 444-501 3915-3976(4289)
37 cd04821 PA_M28_1_2 PA_M28_1_2: 94.6 0.07 1.5E-06 50.1 5.9 63 70-134 21-102 (157)
38 KOG1214 Nidogen and related ba 94.2 0.031 6.7E-07 63.4 2.9 49 444-497 799-857 (1289)
39 KOG2195 Transferrin receptor a 93.8 0.46 9.9E-06 54.4 11.3 217 61-319 148-411 (702)
40 KOG4289 Cadherin EGF LAG seven 93.0 0.043 9.4E-07 65.3 1.4 46 449-501 1218-1273(2531)
41 cd03024 DsbA_FrnE DsbA family, 92.0 0.61 1.3E-05 44.1 7.8 90 309-405 109-200 (201)
42 KOG1214 Nidogen and related ba 91.7 0.12 2.7E-06 58.8 2.9 84 400-499 670-768 (1289)
43 KOG1219 Uncharacterized conser 91.2 0.15 3.2E-06 63.5 3.1 103 370-501 3819-3937(4289)
44 PF07645 EGF_CA: Calcium-bindi 91.1 0.082 1.8E-06 38.3 0.5 20 479-498 16-35 (42)
45 smart00181 EGF Epidermal growt 90.7 0.13 2.9E-06 35.0 1.4 24 445-474 12-35 (35)
46 cd03019 DsbA_DsbA DsbA family, 89.9 0.71 1.5E-05 42.6 5.9 60 330-396 99-158 (178)
47 cd01475 vWA_Matrilin VWA_Matri 89.7 0.2 4.4E-06 48.9 2.2 37 424-469 186-222 (224)
48 cd03022 DsbA_HCCA_Iso DsbA fam 88.7 0.82 1.8E-05 42.8 5.4 87 310-403 102-189 (192)
49 cd00053 EGF Epidermal growth f 88.6 0.26 5.6E-06 32.8 1.5 21 444-468 12-32 (36)
50 KOG4260 Uncharacterized conser 88.1 0.31 6.7E-06 49.3 2.2 73 420-502 231-311 (350)
51 PF01323 DSBA: DSBA-like thior 86.5 0.95 2E-05 42.3 4.4 90 309-405 101-192 (193)
52 cd00054 EGF_CA Calcium-binding 83.3 0.77 1.7E-05 31.0 1.7 20 444-467 15-34 (38)
53 PF00008 EGF: EGF-like domain 81.1 0.79 1.7E-05 31.3 1.0 20 445-468 11-31 (32)
54 COG4882 Predicted aminopeptida 77.7 17 0.00037 38.7 9.9 80 101-188 90-171 (486)
55 KOG4260 Uncharacterized conser 75.8 1.1 2.3E-05 45.5 0.6 40 453-497 217-268 (350)
56 PRK10954 periplasmic protein d 73.4 4 8.8E-05 39.4 4.0 75 309-394 106-180 (207)
57 PF12661 hEGF: Human growth fa 72.9 1.9 4E-05 23.9 0.8 11 454-468 1-11 (13)
58 PF14670 FXa_inhibition: Coagu 70.0 1.8 4E-05 30.6 0.5 23 473-499 8-30 (36)
59 cd01475 vWA_Matrilin VWA_Matri 66.6 2.9 6.2E-05 40.8 1.3 20 479-498 199-218 (224)
60 KOG4289 Cadherin EGF LAG seven 64.4 4 8.7E-05 49.7 2.1 47 442-495 1249-1308(2531)
61 PF07172 GRP: Glycine rich pro 62.5 3.8 8.3E-05 35.3 1.1 27 9-36 1-27 (95)
62 KOG3160 Gamma-interferon induc 60.4 13 0.00027 37.0 4.5 164 198-411 40-208 (220)
63 PF12946 EGF_MSP1_1: MSP1 EGF 55.0 5.4 0.00012 28.6 0.6 27 443-474 10-37 (37)
64 smart00181 EGF Epidermal growt 49.1 9.4 0.0002 25.6 1.1 22 480-501 12-34 (35)
65 TIGR00411 redox_disulf_1 small 45.7 25 0.00053 27.8 3.3 27 379-405 51-78 (82)
66 PF13192 Thioredoxin_3: Thiore 45.2 12 0.00027 30.1 1.5 25 379-403 47-73 (76)
67 smart00179 EGF_CA Calcium-bind 43.9 14 0.0003 25.1 1.3 19 479-497 15-33 (39)
68 COG1651 DsbG Protein-disulfide 43.4 54 0.0012 32.0 6.0 88 309-405 150-239 (244)
69 TIGR02194 GlrX_NrdH Glutaredox 42.1 46 0.001 26.2 4.3 55 334-403 16-70 (72)
70 KOG1217 Fibrillins and related 41.1 20 0.00043 37.7 2.6 54 444-501 243-306 (487)
71 KOG1217 Fibrillins and related 39.4 29 0.00064 36.4 3.6 22 479-500 243-264 (487)
72 TIGR02196 GlrX_YruB Glutaredox 38.7 67 0.0015 24.2 4.7 26 379-405 48-73 (74)
73 cd03025 DsbA_FrnE_like DsbA fa 38.1 52 0.0011 30.6 4.7 76 309-391 103-179 (193)
74 COG1786 Swiveling domain assoc 34.9 3.1E+02 0.0066 25.1 8.7 74 96-185 46-122 (131)
75 cd03027 GRX_DEP Glutaredoxin ( 34.6 64 0.0014 25.3 4.0 46 334-393 18-63 (73)
76 KOG1215 Low-density lipoprotei 31.3 30 0.00065 40.8 2.2 43 423-475 668-710 (877)
77 TIGR02181 GRX_bact Glutaredoxi 30.5 73 0.0016 25.3 3.8 47 334-394 16-62 (79)
78 cd03418 GRX_GRXb_1_3_like Glut 28.9 84 0.0018 24.4 3.9 48 334-394 17-64 (75)
79 COG2234 Iap Predicted aminopep 28.7 1.5E+02 0.0032 31.6 6.9 84 101-188 104-188 (435)
80 cd03028 GRX_PICOT_like Glutare 28.5 84 0.0018 26.1 3.9 47 334-394 30-76 (90)
81 PF00757 Furin-like: Furin-lik 27.0 56 0.0012 30.4 2.8 60 432-498 56-129 (149)
82 COG5540 RING-finger-containing 26.7 23 0.00049 36.8 0.2 43 103-145 149-194 (374)
83 cd03021 DsbA_GSTK DsbA family, 25.3 54 0.0012 31.5 2.5 58 334-395 136-198 (209)
84 COG2761 FrnE Predicted dithiol 24.9 2.7E+02 0.0058 27.9 7.3 90 309-405 118-209 (225)
85 PF13117 Cag12: Cag pathogenic 24.5 88 0.0019 27.9 3.4 30 101-131 82-111 (113)
86 KOG4258 Insulin/growth factor 23.4 33 0.00071 40.3 0.6 63 432-498 240-316 (1025)
87 cd03082 TRX_Fd_NuoE_W_FDH_beta 23.1 95 0.0021 25.1 3.2 22 383-405 48-69 (72)
88 cd04727 pdxS PdxS is a subunit 22.7 1E+02 0.0022 31.8 4.0 68 112-182 16-90 (283)
89 PF13743 Thioredoxin_5: Thiore 22.7 82 0.0018 29.7 3.1 72 311-389 83-155 (176)
90 TIGR00412 redox_disulf_2 small 22.3 86 0.0019 25.1 2.8 25 379-403 47-73 (76)
91 COG0695 GrxC Glutaredoxin and 22.1 1.8E+02 0.0039 23.8 4.7 56 333-400 17-72 (80)
92 cd03026 AhpF_NTD_C TRX-GRX-lik 21.0 91 0.002 26.1 2.8 25 378-402 62-87 (89)
93 PRK03955 hypothetical protein; 20.7 6.6E+02 0.014 23.0 9.1 68 100-185 50-120 (131)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.94 E-value=1e-26 Score=209.19 Aligned_cols=125 Identities=62% Similarity=1.037 Sum_probs=104.3
Q ss_pred ccCCCCCCCceEEEEEecCCCCCCCCCCCCCC-CCCC-CCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCc
Q 010675 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDK-PFKS-KFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (504)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~-~~~~-~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l 138 (504)
|||.|+||++++|.|+|++++.+||+++.... +.+. .+..++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999988999999997311 1110 134589999999999999999999999999999999988878
Q ss_pred eecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 139 ~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
++|..++++. ..++..+++||+++|++++|+.|++.|++|..|++++
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887654321 1134567899999999999999999999999998864
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=1.2e-21 Score=181.53 Aligned_cols=122 Identities=26% Similarity=0.431 Sum_probs=101.4
Q ss_pred ceeeeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEE
Q 010675 52 RSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVA 131 (504)
Q Consensus 52 ~~~~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~ 131 (504)
...|+..+|+||.+++++.++|.|++ ++|.+||+++++++ +......++||||+||+|+|.+|++|||++||+|||||
T Consensus 21 ~~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~-~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~ 98 (153)
T cd02123 21 TDEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP-LNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVY 98 (153)
T ss_pred cceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc-cccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Confidence 35799999999999999999999887 56899999987321 11123349999999999999999999999999999999
Q ss_pred eCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCE
Q 010675 132 DSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEE 181 (504)
Q Consensus 132 d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~ 181 (504)
|+.++++..|...+ ....+++||+++|++++|+.|++.++.++.
T Consensus 99 n~~~~~~~~m~~~~------~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 99 NDESNDLISMSGND------QEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ECCCCcceeccCCC------CCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 99877777776322 112478999999999999999999998876
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.87 E-value=9.6e-22 Score=176.62 Aligned_cols=118 Identities=25% Similarity=0.421 Sum_probs=95.9
Q ss_pred ccccccCCCCCC-CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCC
Q 010675 57 SAIGNFGIPDYG-GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (504)
Q Consensus 57 ~~~A~FG~~~yg-~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~ 135 (504)
..+|.||.+.+. ..+.|.|+. ++|.+||++..++..++ ++|+||+||+|+|.+|+++||++||+||||+|+.+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~~~~~-----gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~ 75 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNAEEVK-----GKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNE 75 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEe-CCchhcccCCCCccccC-----ceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCC
Confidence 368899998885 478999887 56789999887544455 99999999999999999999999999999999875
Q ss_pred C------CceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 136 E------PLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 136 e------~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
+ .++.|.... .....++||+++|++.+|+.|+++|+++..|++.|
T Consensus 76 ~~~~~~~~~~~m~~~~------~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 76 GSSSDTAPMFAMSGDG------DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CccccccceeEeecCC------CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 4 244563211 01236899999999999999999999999888764
No 4
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=1.7e-21 Score=177.67 Aligned_cols=118 Identities=23% Similarity=0.371 Sum_probs=96.3
Q ss_pred ccccccCCCCCCCceEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCC
Q 010675 57 SAIGNFGIPDYGGFMVGSVIY--PDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSV 134 (504)
Q Consensus 57 ~~~A~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~ 134 (504)
..+|+||.+.++..+.|.|+. ++++.+||+++++..+ .....++||||+||+|+|.+|++|||++||++|||||+.
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~--~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~ 94 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPI--PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNP 94 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccC--CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 358999999999999999764 5667899999874101 012239999999999999999999999999999999988
Q ss_pred C--CCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 135 D--EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 135 ~--e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
+ +.++.|..++ ...||+++|++.+|+.|+++|++|.+|++++
T Consensus 95 ~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 95 GTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 5 2356675321 3479999999999999999999999888763
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=2.2e-21 Score=172.47 Aligned_cols=114 Identities=19% Similarity=0.324 Sum_probs=93.6
Q ss_pred ccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCC---C
Q 010675 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE---P 137 (504)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e---~ 137 (504)
.||.+..++.+.|.|+. ++|.+||++..+.++++ ++|+||+||+|+|.+|++|||++||+||||||+..+ .
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~~~~~-----g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~ 74 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNIHDIN-----GNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEY 74 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCccccC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccc
Confidence 48888888888888866 57899999876544455 999999999999999999999999999999998743 2
Q ss_pred ceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEEE
Q 010675 138 LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLD 187 (504)
Q Consensus 138 l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~ 187 (504)
.+.|... +...+++||+++|++++|+.|++.+++|..|++.+.
T Consensus 75 ~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 75 YVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 3556432 123468999999999999999999999998876553
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=7.9e-21 Score=173.46 Aligned_cols=121 Identities=23% Similarity=0.381 Sum_probs=99.2
Q ss_pred ceeeeccccccCCCCCC---CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEE
Q 010675 52 RSKHDSAIGNFGIPDYG---GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAV 128 (504)
Q Consensus 52 ~~~~~~~~A~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aV 128 (504)
..+|...+|.||..++. +.+.+.|+. +++.+||++++ .+++ ++||||+||+|+|.+|++|||++||++|
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~--~~~~-----g~IvLV~RG~C~F~~K~~nA~~aGA~av 87 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPST--SKLS-----GSIALVERGECAFTEKAKIAEAGGASAL 87 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCC--cccC-----CeEEEEECCCCCHHHHHHHHHHcCCcEE
Confidence 45799999999987764 457888777 56789999986 2455 9999999999999999999999999999
Q ss_pred EEEeCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 129 LVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 129 II~d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
||||+.++ +..|....+ +...+++||+++|++.+|+.|+++|++|..|++++
T Consensus 88 Iv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 88 LIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 99998754 455643221 12336899999999999999999999999988764
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.79 E-value=4.2e-19 Score=157.63 Aligned_cols=106 Identities=30% Similarity=0.350 Sum_probs=85.0
Q ss_pred ccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCC
Q 010675 57 SAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE 136 (504)
Q Consensus 57 ~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e 136 (504)
...|.||++ +...+++. +.++|.+||++++ ..+++ ++||||+||+|+|.+|++|||++||++|||||+.++
T Consensus 5 ~~~~~~~~~-~~~~~~~~--~~~~p~~gC~~~~-~~~l~-----gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~ 75 (117)
T cd04813 5 GRYASFSPI-LNPHLRGS--YKVSPTDACSLQE-HAEID-----GKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPG 75 (117)
T ss_pred ccccccCCc-cCcccccc--ccCCCCCCCCCCC-cCCcC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCc
Confidence 456889965 44567776 3367899999885 34555 999999999999999999999999999999998764
Q ss_pred -CceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 010675 137 -PLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (504)
Q Consensus 137 -~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (504)
.+++|..++ ...+++||+++|++++|+.|+.++.+
T Consensus 76 ~~~~~m~~~~-------~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 76 RGLITMFSNG-------DTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred ccceecccCC-------CCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 456675332 13468999999999999999988754
No 8
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=8.2e-18 Score=149.96 Aligned_cols=114 Identities=24% Similarity=0.334 Sum_probs=88.9
Q ss_pred ccCCCCCCCceEEEEEecCC-CCCCCCCCCC-CCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCc
Q 010675 61 NFGIPDYGGFMVGSVIYPDK-GASGCQPFEG-DKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (504)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~-~~~gC~~~~~-~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l 138 (504)
.|++..+.+.++|.|++... ..+||++.+. ..+++ ++||||+||+|+|.+|++|||++||+++||||+.++..
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~-----GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVK-----GAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcC-----CeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 47766667899999999643 3599998752 23454 99999999999999999999999999999999876433
Q ss_pred eecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 139 ~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
..+.... . ...++||+++|++++|+.|+++|++|.+|++++
T Consensus 82 ~~~~~~~------~-~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 82 TAGTLGA------P-NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccccC------C-CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 2111100 0 135789999999999999999999998887653
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.75 E-value=8.5e-18 Score=149.53 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=73.6
Q ss_pred EEEecCCCCCCCCCCCCC-CCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCceecCCCCCCcccCC
Q 010675 74 SVIYPDKGASGCQPFEGD-KPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANG 152 (504)
Q Consensus 74 ~lv~~~~~~~gC~~~~~~-~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l~tM~~p~d~~~~~~ 152 (504)
+|+. .+|..||++.+.+ .+++ ++|+||+||+|+|.+|++|||++||+|||||||.+.. .+... .+
T Consensus 23 ~~~~-~~~~~gC~~~~~~~~~l~-----gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~~~------~~ 88 (120)
T cd02129 23 PLRN-LTSSVLCSASDVPPGGLK-----GKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPSGN------RS 88 (120)
T ss_pred eeec-CCCcCCCCccccCccccC-----CeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCCCC------CC
Confidence 3434 5788999987632 3455 9999999999999999999999999999999987531 11110 11
Q ss_pred CccccCceEEEEeHHHHHHHHHHHHcCCEE
Q 010675 153 YVEKIGIPSALIDRAFGLSLKEALKKGEEV 182 (504)
Q Consensus 153 ~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V 182 (504)
...+++||++||++++|+.|++.+.++-+|
T Consensus 89 ~~~~v~IP~v~Is~~dG~~i~~~l~~~~~v 118 (120)
T cd02129 89 EYEKIDIPVALLSYKDMLDIQQTFGDSVKV 118 (120)
T ss_pred CCcCCcccEEEEeHHHHHHHHHHhccCcEE
Confidence 125789999999999999999999866444
No 10
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.74 E-value=2.5e-17 Score=146.83 Aligned_cols=115 Identities=24% Similarity=0.299 Sum_probs=87.5
Q ss_pred eeeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeC
Q 010675 54 KHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADS 133 (504)
Q Consensus 54 ~~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~ 133 (504)
.|.... |+..++ +.++|+|++. +.+||.+.+.+.+++ ++||||+||+|+|.+|++||+++||++|||||+
T Consensus 8 ~~~~~~--~~~~~~-~~~~g~lv~~--~~~gC~~~~~~~~~~-----gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~ 77 (122)
T cd02130 8 AIPTTA--FTYSPA-GEVTGPLVVV--PNLGCDAADYPASVA-----GNIALIERGECPFGDKSALAGAAGAAAAIIYNN 77 (122)
T ss_pred EEeeee--cccCCC-CCcEEEEEEe--CCCCCCcccCCcCCC-----CEEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 344444 554444 5668999995 468999866433454 999999999999999999999999999999998
Q ss_pred CCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 134 VDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 134 ~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
..+.......+ ......||+++|++++|+.|++.+++|.+|++++
T Consensus 78 ~~~~~~~~~~~--------~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 78 VPAGGLSGTLG--------EPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred CCCcccccccC--------CCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 73221111111 1125789999999999999999999999888764
No 11
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.74 E-value=3.3e-17 Score=145.02 Aligned_cols=113 Identities=35% Similarity=0.553 Sum_probs=92.5
Q ss_pred ccccCCCCCC---CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCC
Q 010675 59 IGNFGIPDYG---GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVD 135 (504)
Q Consensus 59 ~A~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~ 135 (504)
+|.||..... +.+.|.++. +++.++|++.....+++ ++|||++||+|+|.+|+++|+++||+++||||+.+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~v~-----GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~ 75 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNAAAFA-----GKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVA 75 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcCCCCC-----CEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 6889977663 558888876 67899999986433454 99999999999999999999999999999999876
Q ss_pred CC-ceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 136 EP-LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 136 e~-l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
++ .+.|..+. ....||+++|++++|+.|++++++|..|++++
T Consensus 76 ~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 76 GGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 42 35564321 24679999999999999999999998887764
No 12
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.72 E-value=7.1e-18 Score=153.29 Aligned_cols=134 Identities=23% Similarity=0.365 Sum_probs=108.0
Q ss_pred eEEEEcCCCcceeeeccccc-cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHH
Q 010675 42 SIRVLHPQSLRSKHDSAIGN-FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHG 120 (504)
Q Consensus 42 ~l~V~~P~~l~~~~~~~~A~-FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nA 120 (504)
.|+|++|..|+++|+..+|. ||...+ .++.+.-+++++|..||+.+.+..... +.|+|++||+|||..|.+|+
T Consensus 34 ~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~elrN~~f~~-----d~vaL~eRGeCSFl~Ktl~~ 107 (193)
T KOG3920|consen 34 LFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEELRNEIFAP-----DSVALMERGECSFLVKTLNG 107 (193)
T ss_pred EEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHHHhhcccCC-----CcEEEEecCCceeeehhhhh
Confidence 68999999999999999998 998766 467776556689999999997544444 78999999999999999999
Q ss_pred HHcCCcEEEEEeCCCCC-----ceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEEEe
Q 010675 121 QQAGAAAVLVADSVDEP-----LITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDW 188 (504)
Q Consensus 121 Q~aGA~aVII~d~~~e~-----l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~~ 188 (504)
|+|||.|+||.|+.... .+.|- |+ .+-+.-+||++++-..+|-.++..|++-..+-+.++.
T Consensus 108 e~aGa~aiiitd~~~~~~sf~~YveMI-~D------~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 108 EKAGATAIIITDSQNYEYSFHQYVEMI-PD------ESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred hhcCceEEEEecCCCCchhHHHHHHhc-Cc------ccccccCCceEEEeccceEEEehhHHHhCCccEEEec
Confidence 99999999999876432 35664 32 2345689999999999999999999876544444443
No 13
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.6e-15 Score=155.63 Aligned_cols=116 Identities=23% Similarity=0.288 Sum_probs=96.0
Q ss_pred eeeccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeC
Q 010675 54 KHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADS 133 (504)
Q Consensus 54 ~~~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~ 133 (504)
.|...+|+||+....+.+.|.++. ++|.+||+++.+.+. ..+....+++||+||+|+|.+|++|||++|++|+|||||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p~-~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn 112 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFPE-HSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNN 112 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCcc-CCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecC
Confidence 899999999999998999999855 678899999974222 234556899999999999999999999999999999998
Q ss_pred CCC-CceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCC
Q 010675 134 VDE-PLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGE 180 (504)
Q Consensus 134 ~~e-~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~ 180 (504)
.+. .++.|... ..++.||++||+...|+.|+++.....
T Consensus 113 ~~~~~lv~~~~~---------~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 113 VGSEDLVAMASN---------PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred CCCchheeeccC---------CccceeEEEEEeeehHHHHHHhhcccc
Confidence 754 45666421 246999999999999999999765543
No 14
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.62 E-value=3.9e-15 Score=134.40 Aligned_cols=91 Identities=25% Similarity=0.402 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCceecCCCCCCcccCCCcccc
Q 010675 79 DKGASGCQPFEGD-KPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKI 157 (504)
Q Consensus 79 ~~~~~gC~~~~~~-~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i 157 (504)
+.+.+||++++.. ++++ ++||||+||+|+|.+|++|||++||++|||||+.++.+ .+... ...
T Consensus 38 ~~~~~gC~~~~~~~~~~~-----g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~~ 101 (129)
T cd02124 38 SVADDACQPLPDDTPDLS-----GYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DAD 101 (129)
T ss_pred CCCcccCcCCCccccccc-----CeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CCc
Confidence 4578999998621 2333 99999999999999999999999999999999876543 23211 123
Q ss_pred CceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 158 GIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 158 ~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
.||.+++ +++|+.|+++|++|..|++++
T Consensus 102 ~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 102 SIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred ceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 4666666 999999999999999888764
No 15
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.61 E-value=7.1e-15 Score=134.17 Aligned_cols=104 Identities=27% Similarity=0.259 Sum_probs=75.9
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCC-----hHHHHHHHHHcCCcEEEEEeCC--
Q 010675 62 FGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECY-----FALKVWHGQQAGAAAVLVADSV-- 134 (504)
Q Consensus 62 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~Cs-----F~~Kv~nAQ~aGA~aVII~d~~-- 134 (504)
|-.....+.++|.|++.. .-+|+ +. ..+++ ++|+||+||+|+ |.+|++|||++||+|||||||.
T Consensus 27 ~~s~~~~g~~tg~lv~~g--~~g~d-~~-~~d~~-----GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~ 97 (139)
T cd04817 27 YASMPVTGSATGSLYYCG--TSGGS-YI-CGGMA-----GKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAAL 97 (139)
T ss_pred ccccccCCcceEEEEEcc--CCCcc-cc-CCCcC-----ccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCC
Confidence 333334468899998853 34463 21 22455 999999999999 9999999999999999999997
Q ss_pred CCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEE
Q 010675 135 DEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEV 182 (504)
Q Consensus 135 ~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V 182 (504)
++.+..+- .++ ..+++||+++|++++|+.|+++|.++.+|
T Consensus 98 ~g~~~~~l-g~~-------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 98 AGLQNPFL-VDT-------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCcccccc-cCC-------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 33222221 111 12579999999999999999999766444
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.50 E-value=3.7e-14 Score=120.80 Aligned_cols=97 Identities=25% Similarity=0.404 Sum_probs=64.7
Q ss_pred CCCceEEEEEecCC--CCCCCCCCC-CCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCceecCC
Q 010675 67 YGGFMVGSVIYPDK--GASGCQPFE-GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDS 143 (504)
Q Consensus 67 yg~~l~G~lv~~~~--~~~gC~~~~-~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l~tM~~ 143 (504)
|++..+|.||.+.. ....|.+.. ....++ ++|||++||.|+|.+|++|||++||+||||+|.... ...+.
T Consensus 2 ~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~-----gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~-~~~~~- 74 (101)
T PF02225_consen 2 PSGTVTGPLVPAGNGIDEGDCCPSDYNGSDVK-----GKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPN-NGSMI- 74 (101)
T ss_dssp --EEEEEEEEEETTEEECCHHHHHHTSTSTCT-----TSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCS-CTTTT-
T ss_pred CCCCEEEEEEEecCCCCcccccccccCCcccc-----ceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCcc-ccCcc-
Confidence 44678888883221 123333322 233444 999999999999999999999999999999992211 11111
Q ss_pred CCCCcccCCCccccCceEEEEeHHHHHHHHHHH
Q 010675 144 PEESTDANGYVEKIGIPSALIDRAFGLSLKEAL 176 (504)
Q Consensus 144 p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l 176 (504)
. ......+.||+++|++++|+.|++++
T Consensus 75 -~-----~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 75 -D-----SEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp -C-----EBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred -c-----ccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 1 11134689999999999999999875
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.46 E-value=3.3e-13 Score=119.15 Aligned_cols=99 Identities=29% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCceecCCCCCCcccCCCccccCc
Q 010675 80 KGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGI 159 (504)
Q Consensus 80 ~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i~I 159 (504)
.+..+|.+... ++.....+++|||++||+|+|.+|+++||++||+|+||+++.+.....|....+ ......|
T Consensus 28 ~~~~~C~~~~~--~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~~i 99 (126)
T cd00538 28 GPLVGCGYGTT--DDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDPSI 99 (126)
T ss_pred cceEEEecCcc--cccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCCcE
Confidence 45677887641 122223349999999999999999999999999999999987643333322110 0135689
Q ss_pred eEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 160 PSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 160 Psv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
|+++|++++|+.|+++++++.+|++++
T Consensus 100 P~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 100 PTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred eEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999999998877653
No 18
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.40 E-value=4.7e-12 Score=115.93 Aligned_cols=100 Identities=27% Similarity=0.293 Sum_probs=75.2
Q ss_pred cccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCce
Q 010675 60 GNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLI 139 (504)
Q Consensus 60 A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l~ 139 (504)
..++.+...+...+.||++. . |.+-+ +.....+++|||++||+|+|.+|+++|+++||++|||+|+.... .
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d----~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~-~ 85 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPED----FEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL-I 85 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-Cchhc----cCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc-c
Confidence 45676666678899999953 2 22222 22222349999999999999999999999999999999987543 2
Q ss_pred ecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 010675 140 TMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (504)
Q Consensus 140 tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (504)
.|. .+ ....||+++|++.+|+.|++++++
T Consensus 86 ~~~--~~--------~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 86 PGT--LG--------EAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred ccc--CC--------CCCeEeEEEecHHHHHHHHHHHhC
Confidence 221 10 135799999999999999999987
No 19
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=135.30 Aligned_cols=133 Identities=21% Similarity=0.309 Sum_probs=98.1
Q ss_pred EEEcCCCcce----eeeccccccCCCCCCCceEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHH
Q 010675 44 RVLHPQSLRS----KHDSAIGNFGIPDYGGFMVGSVIY--PDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKV 117 (504)
Q Consensus 44 ~V~~P~~l~~----~~~~~~A~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv 117 (504)
.+..|....+ ++....+.||..+....-...+.+ -..|.|-|++.. ..++ ++++++.||+|+|.+|+
T Consensus 40 ~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~--~kl~-----~~~~~v~RGnC~Ft~Ka 112 (541)
T KOG2442|consen 40 MLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQ--SKLS-----GKVALVFRGNCSFTEKA 112 (541)
T ss_pred EEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCC--cccc-----ceeEEEecccceeehhh
Confidence 3345554432 356677789977664322222221 146788898875 2454 89999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEEEec
Q 010675 118 WHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWT 189 (504)
Q Consensus 118 ~nAQ~aGA~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l~~~ 189 (504)
++||++||.|++|.|+..+ +.-|..-+. ....+++||++||++++|+.|.+....+++|++.++-.
T Consensus 113 ~~Aq~aGAsaLliin~~~d-~~~~~~~~~-----~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP 178 (541)
T KOG2442|consen 113 KLAQAAGASALLIINNKKD-LLFMPCGNK-----ETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP 178 (541)
T ss_pred hhhhhcCceEEEEEcCchh-hccCCCCCC-----CccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC
Confidence 9999999999999998754 444543221 22457999999999999999999999999999999974
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.34 E-value=1.8e-11 Score=110.16 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=76.1
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCC--ChHHHHHHHHHcCCcEEEEEeCCCCCceecCCCCC
Q 010675 69 GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGEC--YFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEE 146 (504)
Q Consensus 69 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~C--sF~~Kv~nAQ~aGA~aVII~d~~~e~l~tM~~p~d 146 (504)
+.++|+||+.. .| .+-+ |.....+++||||+||.| +|..|+++|+++||+||||+|+.+..+..+....
T Consensus 21 ~~~~~~lV~~g---~G-~~~d----~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~- 91 (127)
T cd04819 21 GEAKGEPVDAG---YG-LPKD----FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEG- 91 (127)
T ss_pred CCeeEEEEEeC---CC-CHHH----cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccc-
Confidence 56899999963 33 2211 211223499999999999 9999999999999999999987755432221100
Q ss_pred CcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEE
Q 010675 147 STDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIK 185 (504)
Q Consensus 147 ~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~ 185 (504)
........||++.|+.+||+.|++++++|..|.++
T Consensus 92 ----~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 92 ----TEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred ----ccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 11123468999999999999999999999877654
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.26 E-value=1.5e-11 Score=111.81 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=79.4
Q ss_pred cCCCCCCCceEEEEEecCCCCCCCCCCC-C-CCCCCCCCCCCeEEEEecCCC------ChHHH-------HHHHHHcCCc
Q 010675 62 FGIPDYGGFMVGSVIYPDKGASGCQPFE-G-DKPFKSKFPRPTVLLLDRGEC------YFALK-------VWHGQQAGAA 126 (504)
Q Consensus 62 FG~~~yg~~l~G~lv~~~~~~~gC~~~~-~-~~~~~~~~~~~~IvLV~RG~C------sF~~K-------v~nAQ~aGA~ 126 (504)
|.+...++.++|+||++.++ + .+. . ..+++ |+||||+||.| +|..| +.+|+++||.
T Consensus 8 ~s~~t~~~gvta~vv~v~~~--~--~~~~~~~~~v~-----GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~ 78 (134)
T cd04815 8 GSVATPPEGITAEVVVVKSF--D--ELKAAPAGAVK-----GKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAV 78 (134)
T ss_pred CCCCCCCCCcEEEEEEECCH--H--HHHhcchhhcC-----CeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCE
Confidence 44444556799999987532 1 222 1 22344 99999999999 99999 7999999999
Q ss_pred EEEEEeCCCCC---c--eecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 127 AVLVADSVDEP---L--ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 127 aVII~d~~~e~---l--~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
|+||+|+.+.. . -+|..+ .....||++.|+.+||+.|.++|++|..|+++|
T Consensus 79 avIv~s~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 79 AVLIRSIGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred EEEEEecCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 99999965332 1 123221 124679999999999999999999999888764
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.03 E-value=1.3e-09 Score=96.88 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCeEEEEecCCC-ChHHHHHHHHHcCCcEEEEEeCCCCCceecCCCCCCcccCCCccccC
Q 010675 81 GASGCQPFEG-DKPFKSKFPRPTVLLLDRGEC-YFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIG 158 (504)
Q Consensus 81 ~~~gC~~~~~-~~~~~~~~~~~~IvLV~RG~C-sF~~Kv~nAQ~aGA~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i~ 158 (504)
...+|++... +..++ ++|||++||.| +|.+|+.+|+++||.++|++++..+.. .+. .....
T Consensus 36 ~~~~C~~~~~~~~~v~-----GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~~ 98 (126)
T cd02120 36 DASLCLPGSLDPSKVK-----GKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAHV 98 (126)
T ss_pred ccccCCCCCCChhhcc-----ccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------ccccc
Confidence 3478987652 23344 99999999999 999999999999999999999865432 111 11357
Q ss_pred ceEEEEeHHHHHHHHHHHHcCCE
Q 010675 159 IPSALIDRAFGLSLKEALKKGEE 181 (504)
Q Consensus 159 IPsv~Is~~dG~~L~~~l~~g~~ 181 (504)
||+++|++++|+.|+++++++..
T Consensus 99 iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 99 LPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred cceEEECHHHHHHHHHHHHcCCC
Confidence 99999999999999999998653
No 23
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.98 E-value=3.8e-09 Score=100.65 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=74.9
Q ss_pred eccccccCCCCCCCceEEEEEecCCCCCCCCCCCCCCCCC--CCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeC
Q 010675 56 DSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFK--SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADS 133 (504)
Q Consensus 56 ~~~~A~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~--~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~ 133 (504)
+.....|-.-...+.++|.|||+ ..| .+.++. .+. .....++||||+||.|+|.+|+++||++||+|||||++
T Consensus 14 ~l~~~~f~~~s~~G~v~g~lVyv---n~G-~~~Df~-~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~D 88 (183)
T cd02128 14 VENPGGYVAYSAAGTVTGKLVYA---NYG-RKKDFE-DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPD 88 (183)
T ss_pred ecccccccCCCCCCceEEEEEEc---CCC-CHHHHH-HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecC
Confidence 33333455444457899999996 244 322210 000 11234999999999999999999999999999999987
Q ss_pred CCCC-------------------ceecCCCCCCcc---cCCCccccCceEEEEeHHHHHHHHHHHHc
Q 010675 134 VDEP-------------------LITMDSPEESTD---ANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (504)
Q Consensus 134 ~~e~-------------------l~tM~~p~d~~~---~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (504)
..+. ..|++.|..... .++...-..||++=||.+++..|++.|.-
T Consensus 89 p~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 89 PADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred HHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 4211 112221111000 00001235799999999999999999963
No 24
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.45 E-value=1.2e-06 Score=86.08 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=78.5
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCCC--CCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCC---------
Q 010675 69 GFMVGSVIYPDKGASGCQPFEGDKPFK--SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP--------- 137 (504)
Q Consensus 69 ~~l~G~lv~~~~~~~gC~~~~~~~~~~--~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~--------- 137 (504)
+.++|.|||+. .|...++. .+. ....+++|||+++|.|.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyvn----yG~~~D~~-~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~ 117 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFE-YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGK 117 (220)
T ss_pred CCceEEEEEcC----CCcHHHHH-HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccc
Confidence 56899999963 34432210 011 123349999999999999999999999999999999875221
Q ss_pred -----------ceec-------CCCCCC-c----c--cC------CCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 138 -----------LITM-------DSPEES-T----D--AN------GYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 138 -----------l~tM-------~~p~d~-~----~--~~------~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
-+.. ..++|- | + +. ....-..||+.=||..|++.|++.|.... +--
T Consensus 118 ~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p~ 194 (220)
T cd02121 118 TYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---APS 194 (220)
T ss_pred cCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CCc
Confidence 0000 001110 0 0 00 01122579999999999999999997533 345
Q ss_pred EecCCCCCCCCcceEEEe
Q 010675 187 DWTESMPHPDQRVEYELW 204 (504)
Q Consensus 187 ~~~~~~p~pd~~Ve~~~w 204 (504)
+|...+ .+.|.+|
T Consensus 195 ~W~g~l-----~~~y~~g 207 (220)
T cd02121 195 DWQGGL-----PVTYRLG 207 (220)
T ss_pred cccCCC-----CCceeeC
Confidence 776544 2567765
No 25
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.28 E-value=9e-06 Score=75.56 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=65.0
Q ss_pred CceEEEEEecCC--CCCCCCCCCC-CCCCCCCCCCCeEEEEecCC------------------CChHHHHHHHHHcCCcE
Q 010675 69 GFMVGSVIYPDK--GASGCQPFEG-DKPFKSKFPRPTVLLLDRGE------------------CYFALKVWHGQQAGAAA 127 (504)
Q Consensus 69 ~~l~G~lv~~~~--~~~gC~~~~~-~~~~~~~~~~~~IvLV~RG~------------------CsF~~Kv~nAQ~aGA~a 127 (504)
+.++|.||++.. ...+|...++ +.+++ |+||||.||. |+|..|+.+|+++||+|
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~giDVk-----GKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~a 92 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAGLDVK-----GKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAA 92 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccCCCCC-----CeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeE
Confidence 679999999742 2456654432 23444 9999999985 99999999999999999
Q ss_pred EEEEeCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 010675 128 VLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (504)
Q Consensus 128 VII~d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (504)
||||++..+..-.-..+. .. ... .++.|+....+.+..++..
T Consensus 93 VIv~~d~~~~~~~~~~~~------~~--~~~-~~~~~~~~~~~~~~~~~~~ 134 (151)
T cd04822 93 VIVVNGPNSHSGDADRLP------RF--GGT-APQRVDIAAADPWFTAAEA 134 (151)
T ss_pred EEEEeCCcccCccccccc------cc--Ccc-ceEEechHHHHHHhhhhhh
Confidence 999998644321000000 00 011 1788888888888886443
No 26
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.15 E-value=7.3e-06 Score=75.40 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=53.4
Q ss_pred eccccccCCCCCCCceEEEEEecCCC--CCCCCCCCCCCCCCCCCCCCeEEEEecCCC------------------ChHH
Q 010675 56 DSAIGNFGIPDYGGFMVGSVIYPDKG--ASGCQPFEGDKPFKSKFPRPTVLLLDRGEC------------------YFAL 115 (504)
Q Consensus 56 ~~~~A~FG~~~yg~~l~G~lv~~~~~--~~gC~~~~~~~~~~~~~~~~~IvLV~RG~C------------------sF~~ 115 (504)
+..+.+|+.+ ..+.++||++... ..+|.-.+ |...+.+||||||.||.| +|..
T Consensus 8 ~~~~~~~~~~---~~~~aelVfvGyGi~a~~~~~dD----Yag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~ 80 (142)
T cd04814 8 RAAMLNVDAV---AIKDAPLVFVGYGIKAPELSWDD----YAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTY 80 (142)
T ss_pred cccccCCCCc---cccceeeEEecCCcCCCCCChhh----cCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHH
Confidence 3455556633 5678999987432 34555433 222333499999999999 6999
Q ss_pred HHHHHHHcCCcEEEEEeCCC
Q 010675 116 KVWHGQQAGAAAVLVADSVD 135 (504)
Q Consensus 116 Kv~nAQ~aGA~aVII~d~~~ 135 (504)
|+++|+++||+||||+++.+
T Consensus 81 K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 81 KYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHHCCCcEEEEEeCCC
Confidence 99999999999999999864
No 27
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.11 E-value=1.2e-05 Score=74.25 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=67.6
Q ss_pred CCceEEEEEecCCCCCCCC-CCC---CCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCC------
Q 010675 68 GGFMVGSVIYPDKGASGCQ-PFE---GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP------ 137 (504)
Q Consensus 68 g~~l~G~lv~~~~~~~gC~-~~~---~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~------ 137 (504)
.++++|++||+. .|=. .|. ...+++ |+|||++.|.-++..|++|||++||++||||.|..+.
T Consensus 12 sG~Vtg~~VYvN---yG~~eDf~~L~~~V~v~-----GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~ 83 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVEDLRRIRDNMNVT-----NQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHT 83 (153)
T ss_pred CCceEEEEEEec---CCCHHHHHHHHhCCCcc-----ceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCC
Confidence 478999999962 2211 111 112344 9999999999999999999999999999999875221
Q ss_pred ---ce--ecCCCCC-Cc----c--cC---CCccccCceEEEEeHHHHHHHHHHHHc
Q 010675 138 ---LI--TMDSPEE-ST----D--AN---GYVEKIGIPSALIDRAFGLSLKEALKK 178 (504)
Q Consensus 138 ---l~--tM~~p~d-~~----~--~~---~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (504)
.. .+..++| -| + +. ....-.+||+.=||..|+..|+++-.+
T Consensus 84 ~~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~~ 139 (153)
T cd02131 84 WHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPS 139 (153)
T ss_pred ccceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCcc
Confidence 00 1110111 00 0 00 011236799999999999999887543
No 28
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.09 E-value=1.4e-06 Score=61.70 Aligned_cols=36 Identities=39% Similarity=0.867 Sum_probs=30.3
Q ss_pred hhcCCCceeccccccccccccccCcceeecCCcCCeeeecCCcccc
Q 010675 428 CLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISC 473 (504)
Q Consensus 428 C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~C 473 (504)
|..+||||+ +.|+++.++|+|.||+ |+.+..|| ++|
T Consensus 1 C~~~NGgC~-------h~C~~~~g~~~C~C~~--Gy~L~~D~-~tC 36 (36)
T PF14670_consen 1 CSVNNGGCS-------HICVNTPGSYRCSCPP--GYKLAEDG-RTC 36 (36)
T ss_dssp CTTGGGGSS-------SEEEEETTSEEEE-ST--TEEE-TTS-SSE
T ss_pred CCCCCCCcC-------CCCccCCCceEeECCC--CCEECcCC-CCC
Confidence 788999999 7999999999999999 77777898 665
No 29
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.01 E-value=2.1e-05 Score=71.92 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=49.0
Q ss_pred CCceEEEEEecCC--CCCCCCCCCC-CCCCCCCCCCCeEEEEecCCCC------------hHHHHHHHHHcCCcEEEEEe
Q 010675 68 GGFMVGSVIYPDK--GASGCQPFEG-DKPFKSKFPRPTVLLLDRGECY------------FALKVWHGQQAGAAAVLVAD 132 (504)
Q Consensus 68 g~~l~G~lv~~~~--~~~gC~~~~~-~~~~~~~~~~~~IvLV~RG~Cs------------F~~Kv~nAQ~aGA~aVII~d 132 (504)
.+.++|.||++.. ...+|..-++ ..+++ |+||||.||.|. +..|+++|+++||+|||||+
T Consensus 19 ~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVk-----GKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 19 AASVEAPLVFVGYGLVAPELGHDDYAGLDVK-----GKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCceEeEEEecCCcCccCcCHhhccCCCCC-----CeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 3678999999742 2355654432 23444 999999999994 88999999999999999999
Q ss_pred CCC
Q 010675 133 SVD 135 (504)
Q Consensus 133 ~~~ 135 (504)
+..
T Consensus 94 d~~ 96 (137)
T cd04820 94 TPR 96 (137)
T ss_pred CCc
Confidence 753
No 30
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.78 E-value=1.1e-05 Score=57.19 Aligned_cols=36 Identities=44% Similarity=0.992 Sum_probs=29.1
Q ss_pred hhcCCCceeccccccccccccccCcceeecCCcCCeeeecCCcccc
Q 010675 428 CLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISC 473 (504)
Q Consensus 428 C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~C 473 (504)
|+.+|+||.. ...|+++.+++.|.|++ ||.||| ..|
T Consensus 1 C~~~~~~C~~-----nA~C~~~~~~~~C~C~~----Gy~GdG-~~C 36 (36)
T PF12947_consen 1 CLENNGGCHP-----NATCTNTGGSYTCTCKP----GYEGDG-FFC 36 (36)
T ss_dssp TTTGGGGS-T-----TCEEEE-TTSEEEEE-C----EEECCS-TCE
T ss_pred CCCCCCCCCC-----CcEeecCCCCEEeECCC----CCccCC-cCC
Confidence 7889999985 58899999999999999 999999 444
No 31
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.58 E-value=3.2e-05 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.761 Sum_probs=20.0
Q ss_pred cceeecCCcCCeeeecCCcccccccCC
Q 010675 452 GRLCECPIVKGVQYRGDGYISCQAYGP 478 (504)
Q Consensus 452 ~~~C~Cp~~~~~~~~gdg~~~Ce~~~~ 478 (504)
||.|+||+ |..+.+|| ++|+||||
T Consensus 1 sy~C~C~~--Gy~l~~d~-~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPP--GYQLSPDG-RSCEDIDE 24 (24)
T ss_pred CEEeeCCC--CCcCCCCC-CccccCCC
Confidence 58999999 44444899 89999997
No 32
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.95 E-value=0.00038 Score=50.62 Aligned_cols=34 Identities=29% Similarity=0.633 Sum_probs=29.2
Q ss_pred CchhhhcCCCceeccccccccccccccCcceeecCCcCCeeee
Q 010675 424 ETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYR 466 (504)
Q Consensus 424 ~~~~C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~ 466 (504)
+.|||+.....|. ....|.||.+||.|.||+ ||+
T Consensus 1 DidEC~~~~~~C~-----~~~~C~N~~Gsy~C~C~~----Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCP-----ENGTCVNTEGSYSCSCPP----GYE 34 (42)
T ss_dssp ESSTTTTTSSSSS-----TTSEEEEETTEEEEEEST----TEE
T ss_pred CccccCCCCCcCC-----CCCEEEcCCCCEEeeCCC----CcE
Confidence 4789999888895 358999999999999999 676
No 33
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.88 E-value=0.037 Score=49.52 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=58.7
Q ss_pred hhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEc
Q 010675 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (504)
Q Consensus 309 ~WW~Yv~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 388 (504)
++|+|....-.. . ...+.+=-.++++++|+|.+++++|+.+.. ....|+++.+.-.. .+|...||++||
T Consensus 68 ~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMAT---R-GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLARA----LGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 688888765332 1 112221145677899999999999998642 33455555443222 347889999999
Q ss_pred CeEeecccChHHHHHHH
Q 010675 389 DVQYRGKLERTAVLRAI 405 (504)
Q Consensus 389 ~~~yrG~L~~~~vl~aI 405 (504)
|+.+.|..+.+.+.++|
T Consensus 137 g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 137 DTVIPGAVPADTLKEAI 153 (154)
T ss_pred CEEecCCCCHHHHHHHh
Confidence 99999999888887765
No 34
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.06 E-value=0.13 Score=46.60 Aligned_cols=152 Identities=14% Similarity=0.222 Sum_probs=88.2
Q ss_pred CCCCcceEEEeecCCcccccchhhhHHHHHHHHHHHHHHhhCCceEEeeEEEEecCccccccccccccccccCCcccCCC
Q 010675 194 HPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPD 273 (504)
Q Consensus 194 ~pd~~Ve~~~w~ns~d~~g~~~d~s~~Fi~~f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~c~~~Ci~~GrYCa~d 273 (504)
.|++++....+.+.. |-...+|...+.++.+.+-..|.+.|..|-+
T Consensus 9 ~~~a~~~v~~f~d~~------Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~---------------------------- 54 (162)
T PF13462_consen 9 NPDAPITVTEFFDFQ------CPHCAKFHEELEKLLKKYIDPGKVKFVFRPV---------------------------- 54 (162)
T ss_dssp -TTTSEEEEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEES----------------------------
T ss_pred CCCCCeEEEEEECCC------CHhHHHHHHHHhhhhhhccCCCceEEEEEEc----------------------------
Confidence 357888888888874 3345556666666555552246777776622
Q ss_pred CCCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHhhhccccCC
Q 010675 274 PEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGD 353 (504)
Q Consensus 274 Pd~~~~~~~sG~dVV~E~lRqlCi~~~~~~~~~~~~WW~Yv~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~d 353 (504)
|-. +..+..-..--.|+.+.. + .||.+...+...-. ... .. .++.++-+.+.+++++|+.+
T Consensus 55 ~~~-------~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~~~~~~---~~~-~~--~~i~~~~~~~~~~~~~~~~~ 115 (162)
T PF13462_consen 55 PLD-------KHSSLRAAMAAECVADQG-K-----YFWFFHELLFSQQE---NFE-NK--KDIAANAGGSNEQFNKCLNS 115 (162)
T ss_dssp SSS-------HHHHHHHHHHHHHHHHHT-H-----HHHHHHHHHHHHCH---STS-SH--HHHHHHTTSHHHHHHHHHTS
T ss_pred ccc-------chhHHHHHHHHHHHHHHh-H-----HHHHHHHHHHHhhh---ccc-hh--HHHHHHcCCCHHHHHHHhhc
Confidence 100 111333334455666664 4 68888776554422 111 22 44555556668889999986
Q ss_pred CcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeecccChHHHHHHH
Q 010675 354 PEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAI 405 (504)
Q Consensus 354 s~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~L~~~~vl~aI 405 (504)
.. ....+++..+.-.. .+|..-||++|||+.+.|..+.+++.++|
T Consensus 116 ~~---~~~~~~~~~~~~~~----~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 116 DE---IKAQLEADSQLARQ----LGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HH---HHHHHHHHHHHHHH----HT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred hH---HHHHHHHHHHHHHH----cCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 43 22333333222211 23677899999999999998988887765
No 35
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.07 E-value=0.013 Score=40.72 Aligned_cols=38 Identities=34% Similarity=0.782 Sum_probs=27.2
Q ss_pred chhhhcCCCceeccccccccccccccCcceeecCCcCCeeeecCCccccc
Q 010675 425 TNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQ 474 (504)
Q Consensus 425 ~~~C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce 474 (504)
.++|..+ .-|.. ...|.++.++|.|.||+ +|. +| .+|+
T Consensus 2 ~~~C~~~-~~C~~-----~~~C~~~~g~~~C~C~~----g~~-~g-~~C~ 39 (39)
T smart00179 2 IDECASG-NPCQN-----GGTCVNTVGSYRCECPP----GYT-DG-RNCE 39 (39)
T ss_pred cccCcCC-CCcCC-----CCEeECCCCCeEeECCC----CCc-cC-CcCC
Confidence 5677653 34652 13699999999999999 788 77 5664
No 36
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=95.07 E-value=0.03 Score=69.08 Aligned_cols=51 Identities=27% Similarity=0.661 Sum_probs=37.8
Q ss_pred cccccccCcceeecCCcCCeeeecCCccccccc--CC---------CccccCCCccccCCCCCceeccc
Q 010675 444 TACKDTFRGRLCECPIVKGVQYRGDGYISCQAY--GP---------ARCSINNGGCWSDTKNGLTFSAC 501 (504)
Q Consensus 444 ~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce~~--~~---------~~c~~~~gg~~~~~~~~~~~~~~ 501 (504)
-.|.-...++.|.||. ||.|+ +||.- +| +.|.|..|+++|.|..|++-.-|
T Consensus 3915 gtCip~~n~f~CnC~~----gyTG~---~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3915 GTCIPFYNGFLCNCPN----GYTGK---RCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTC 3976 (4289)
T ss_pred CEEEecCCCeeEeCCC----CccCc---eeecccccccccccccCCceeeccCCceEeccChhHhcccC
Confidence 3566666788899999 88875 57753 34 45888999999999988775554
No 37
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.64 E-value=0.07 Score=50.08 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=39.7
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCh-------------------HHHHHHHHHcCCcEEEE
Q 010675 70 FMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYF-------------------ALKVWHGQQAGAAAVLV 130 (504)
Q Consensus 70 ~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF-------------------~~Kv~nAQ~aGA~aVII 130 (504)
...++||++.....+ .... -.++...+.+||||||.+|+=.| ..|...|+++||+|||+
T Consensus 21 ~~~~elVFvGyGi~a-pe~~-~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 21 LKDSPLVFVGYGIVA-PEYG-WDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCEEEeccCccC-cccC-cccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 356677775322221 0011 01333344459999998876543 34999999999999999
Q ss_pred EeCC
Q 010675 131 ADSV 134 (504)
Q Consensus 131 ~d~~ 134 (504)
+++.
T Consensus 99 v~~~ 102 (157)
T cd04821 99 VHET 102 (157)
T ss_pred EeCC
Confidence 9765
No 38
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.18 E-value=0.031 Score=63.39 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=40.7
Q ss_pred ccccccc-CcceeecCCcCCeeeecCCcccccccCC---------CccccCCCccccCCCCCce
Q 010675 444 TACKDTF-RGRLCECPIVKGVQYRGDGYISCQAYGP---------ARCSINNGGCWSDTKNGLT 497 (504)
Q Consensus 444 ~~C~~t~-~~~~C~Cp~~~~~~~~gdg~~~Ce~~~~---------~~c~~~~gg~~~~~~~~~~ 497 (504)
-.|..+. ..|.|+|-+ ||.||| ..|.|+|| ..|.|+.|+.-|.|..||.
T Consensus 799 a~c~~hGgs~y~C~CLP----GfsGDG-~~c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~ 857 (1289)
T KOG1214|consen 799 ARCVHHGGSTYSCACLP----GFSGDG-HQCTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYY 857 (1289)
T ss_pred eEEEecCCceEEEeecC----CccCCc-cccccccccCccccCCCceEecCCCcceeecccCcc
Confidence 4455553 368899999 999999 89999998 4688999999999999864
No 39
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=93.80 E-value=0.46 Score=54.43 Aligned_cols=217 Identities=15% Similarity=0.096 Sum_probs=120.3
Q ss_pred ccCCCCCCCceEEEEEecCCCCCCCCCCC----CCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCC
Q 010675 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFE----GDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDE 136 (504)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~----~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e 136 (504)
.|+.-.+.++..|.+||.-. ..=..+. -+..+ .++|+|++=|.=++..|+.||+.+||.+||||.+..+
T Consensus 148 ~~~~~s~~g~~~~~~Vy~N~--~~~~d~~~l~~~~i~~-----~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~d 220 (702)
T KOG2195|consen 148 PFRAYSPSGSVTGELVYANY--GRIEDFYKLEDLGINL-----SGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPYD 220 (702)
T ss_pred chhccCcCCCccceEEEEec--CchhhhhHhhcCcccc-----cCceEEEEccccchhhhHhhHHHhhcCcEEEeecccc
Confidence 34433445678888888521 1111111 01122 3999999999999999999999999999999976421
Q ss_pred ----C---------------ceec------CCCCCCc-----c------cC---CC-ccccCceEEEEeHHHHHHHHHHH
Q 010675 137 ----P---------------LITM------DSPEEST-----D------AN---GY-VEKIGIPSALIDRAFGLSLKEAL 176 (504)
Q Consensus 137 ----~---------------l~tM------~~p~d~~-----~------~~---~~-~~~i~IPsv~Is~~dG~~L~~~l 176 (504)
. ++.. ...+|.. + .+ .. +.-..||+.=|+..+.+.|...+
T Consensus 221 ~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~~~ae~l~~~~ 300 (702)
T KOG2195|consen 221 YGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSPDAKFSGGLPKIPSLPISAEDAEILLRLL 300 (702)
T ss_pred ccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCChhhhhcCCCCCCCCcCccchhHHHHHHHh
Confidence 0 0000 0001000 0 00 11 11248999999996666666666
Q ss_pred HcCCEEEEEEEecCCCCCCCCcceEEEeecCCcccccchhhhHHHHHHHHHHHHHHhhCCceEEeeEEEEecCccccccc
Q 010675 177 KKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILS 256 (504)
Q Consensus 177 ~~g~~V~v~l~~~~~~p~pd~~Ve~~~w~ns~d~~g~~~d~s~~Fi~~f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~ 256 (504)
..+-... + ...+.|.++....-.+. + .+.. +...+++.+.+-.+-+...+
T Consensus 301 ~g~~~~~----~-------~~~~~~~~gpg~~~~~~--------~---------~~~~-~~~~~~ki~NIig~I~Gs~e- 350 (702)
T KOG2195|consen 301 GGGVKPD----G-------LLGVSYRVGPGSTGDKD--------L---------VVVQ-NTREETKIQNIIGKIEGSEE- 350 (702)
T ss_pred CCCcccc----c-------ccCcccccccccccccc--------c---------eecc-ceeeeeeeeeEEEEEecCcC-
Confidence 5442222 2 34556666555543211 1 0010 23455566555544433222
Q ss_pred cccccccccCCcccCCCCCCCCCCCCcchhhHHHHHHHHhhhhhhcc---cCCcchhhhHHHHHHh
Q 010675 257 SQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANE---SNRSWVWWDYVTDFHI 319 (504)
Q Consensus 257 ~~c~~~Ci~~GrYCa~dPd~~~~~~~sG~dVV~E~lRqlCi~~~~~~---~~~~~~WW~Yv~~F~~ 319 (504)
+++-|-.|.|-++=--| -.+..+|+-+++|+.|++-.++...- ....|.||+ ..+|+-
T Consensus 351 ---pD~~ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWd-AeEfGl 411 (702)
T KOG2195|consen 351 ---PDRYVIIGAHRDSWTFG-AIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWD-AEEFGL 411 (702)
T ss_pred ---CCeEEEEeccccccccC-CcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEcc-chhccc
Confidence 34445555443322222 12344789999999999999876653 125578997 455654
No 40
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=92.95 E-value=0.043 Score=65.27 Aligned_cols=46 Identities=30% Similarity=0.730 Sum_probs=37.3
Q ss_pred ccCcceeecCCcCCeeeecCCccccc-ccCC---------CccccCCCccccCCCCCceeccc
Q 010675 449 TFRGRLCECPIVKGVQYRGDGYISCQ-AYGP---------ARCSINNGGCWSDTKNGLTFSAC 501 (504)
Q Consensus 449 t~~~~~C~Cp~~~~~~~~gdg~~~Ce-~~~~---------~~c~~~~gg~~~~~~~~~~~~~~ 501 (504)
+..|.+|+||+ ||.|| -|| .||+ ++|...-|||-|+|+.|++=.-|
T Consensus 1218 pvnglrCrCPp----GFTgd---~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehC 1273 (2531)
T KOG4289|consen 1218 PVNGLRCRCPP----GFTGD---YCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHC 1273 (2531)
T ss_pred ccCceeEeCCC----CCCcc---cccchhHhhhcCCCCCCCceEEecCceeEEecCCccccce
Confidence 34478899999 99999 487 4554 67888899999999999987666
No 41
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.96 E-value=0.61 Score=44.14 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=56.4
Q ss_pred hhhhHHHHHHhhcCcchhhh-hHHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEE
Q 010675 309 VWWDYVTDFHIRCSMKEKRY-SKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (504)
Q Consensus 309 ~WW~Yv~~F~~~C~~~~~~~-~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~I 387 (504)
++|.|....-..-....... ..+=-.++.+.+|+|.+++++++.+... ...|+++.+.-.. .+|.-.|+++|
T Consensus 109 ~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~---~~~~~~~~~~a~~----~gv~G~Pt~vv 181 (201)
T cd03024 109 KQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEY---ADEVRADEARARQ----LGISGVPFFVF 181 (201)
T ss_pred cHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCccc---chHHHHHHHHHHH----CCCCcCCEEEE
Confidence 46777766443222111111 1344567888899999999999987542 2334433332222 23788999999
Q ss_pred cCe-EeecccChHHHHHHH
Q 010675 388 NDV-QYRGKLERTAVLRAI 405 (504)
Q Consensus 388 N~~-~yrG~L~~~~vl~aI 405 (504)
||. ...|-.+.+.+.++|
T Consensus 182 ~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 182 NGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred CCeEeecCCCCHHHHHHHh
Confidence 976 458888877777665
No 42
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=91.66 E-value=0.12 Score=58.76 Aligned_cols=84 Identities=23% Similarity=0.417 Sum_probs=65.6
Q ss_pred HHHHHHHccCcCCCCCCccc---CCcCCchhhhcCCCceeccccccccccccc-cCcceeecCCcCCeeeecCCcccccc
Q 010675 400 AVLRAICAGFKEATEPQICL---TGDLETNECLERNGGCWQDTQANITACKDT-FRGRLCECPIVKGVQYRGDGYISCQA 475 (504)
Q Consensus 400 ~vl~aICagf~~~t~P~~C~---~~~~~~~~C~~~ngGC~~~~~~~~~~C~~t-~~~~~C~Cp~~~~~~~~gdg~~~Ce~ 475 (504)
-+++.-|+.|.+ |. +...-+++|-...++|-. -.+|.-. ...|.|+|-. +|+||| +.|.|
T Consensus 670 ~~lr~a~Sn~ig------pV~E~S~~~~~npCy~gsh~cdt-----~a~C~pg~~~~~tcecs~----g~~gdg-r~c~d 733 (1289)
T KOG1214|consen 670 RVLRFAVSNQIG------PVKEDSDPTPVNPCYDGSHMCDT-----TARCHPGTGVDYTCECSS----GYQGDG-RNCVD 733 (1289)
T ss_pred cchhhhhhhccc------ceecCCCCcccccceecCcccCC-----CccccCCCCcceEEEEee----ccCCCC-CCCCC
Confidence 367777777752 32 333467899999999964 3467554 3468999999 999999 89999
Q ss_pred cCC-----------CccccCCCccccCCCCCceec
Q 010675 476 YGP-----------ARCSINNGGCWSDTKNGLTFS 499 (504)
Q Consensus 476 ~~~-----------~~c~~~~gg~~~~~~~~~~~~ 499 (504)
++| ..|.|..|.+.|+|+.|+.|+
T Consensus 734 ~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~ 768 (1289)
T KOG1214|consen 734 ENECATGFHRCGPNSVCINLPGSYRCECRSGYEFA 768 (1289)
T ss_pred hhhhccCCCCCCCCceeecCCCceeEEEeecceec
Confidence 997 578999999999999999884
No 43
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=91.21 E-value=0.15 Score=63.48 Aligned_cols=103 Identities=27% Similarity=0.544 Sum_probs=61.7
Q ss_pred HhcCCCCCceEEcceEEEcCeEe----ecccChHHHHHHHHccCcCCCCCCcccCC--cCCchhhhcCCCceeccccccc
Q 010675 370 QVGRGSRGDVTILPTLVINDVQY----RGKLERTAVLRAICAGFKEATEPQICLTG--DLETNECLERNGGCWQDTQANI 443 (504)
Q Consensus 370 q~~~~~~~~v~~~Ptl~IN~~~y----rG~L~~~~vl~aICagf~~~t~P~~C~~~--~~~~~~C~~~ngGC~~~~~~~~ 443 (504)
|+.+|++| -+-++++||... +|+ +...+++.. . -. .-|.-. ....+.| .|.|-|...
T Consensus 3819 qvs~Gf~G---CldsiyLng~el~l~~k~~-s~a~~~el~----~--l~-pgC~l~~d~C~~npC-qhgG~C~~~----- 3881 (4289)
T KOG1219|consen 3819 QVSYGFDG---CLDSIYLNGMELPLTRKGK-SVAGLMELF----G--LQ-PGCSLLTDPCNDNPC-QHGGTCISQ----- 3881 (4289)
T ss_pred cccccccc---eeeeEEEccccccccCCCc-hhhhhhhhh----c--cc-ccccccccccccCcc-cCCCEecCC-----
Confidence 55666664 456889999866 232 223333321 0 11 123321 1122344 333446521
Q ss_pred cccccccCcceeecCCcCCeeeecCCccccc-ccCC---------CccccCCCccccCCCCCceeccc
Q 010675 444 TACKDTFRGRLCECPIVKGVQYRGDGYISCQ-AYGP---------ARCSINNGGCWSDTKNGLTFSAC 501 (504)
Q Consensus 444 ~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce-~~~~---------~~c~~~~gg~~~~~~~~~~~~~~ 501 (504)
-.+||.|+||. +|.| ++|| ++.+ +.|..-++|+-|.|++||+=.-|
T Consensus 3882 -----~~ggy~CkCps----qysG---~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~C 3937 (4289)
T KOG1219|consen 3882 -----PKGGYKCKCPS----QYSG---NHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRC 3937 (4289)
T ss_pred -----CCCceEEeCcc----cccC---cccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCcee
Confidence 13589999999 9995 6898 3332 67888999999999999986555
No 44
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=91.06 E-value=0.082 Score=38.32 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=18.5
Q ss_pred CccccCCCccccCCCCCcee
Q 010675 479 ARCSINNGGCWSDTKNGLTF 498 (504)
Q Consensus 479 ~~c~~~~gg~~~~~~~~~~~ 498 (504)
..|.|+.|+|.|.|+.||.+
T Consensus 16 ~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 16 GTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp SEEEEETTEEEEEESTTEEE
T ss_pred CEEEcCCCCEEeeCCCCcEE
Confidence 67999999999999999884
No 45
>smart00181 EGF Epidermal growth factor-like domain.
Probab=90.74 E-value=0.13 Score=34.97 Aligned_cols=24 Identities=38% Similarity=0.891 Sum_probs=19.6
Q ss_pred ccccccCcceeecCCcCCeeeecCCccccc
Q 010675 445 ACKDTFRGRLCECPIVKGVQYRGDGYISCQ 474 (504)
Q Consensus 445 ~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce 474 (504)
.|.++.+++.|.||+ ||+|+ ..|+
T Consensus 12 ~C~~~~~~~~C~C~~----g~~g~--~~C~ 35 (35)
T smart00181 12 TCINTPGSYTCSCPP----GYTGD--KRCE 35 (35)
T ss_pred EEECCCCCeEeECCC----CCccC--CccC
Confidence 699888899999999 89886 4453
No 46
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.86 E-value=0.71 Score=42.57 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeeccc
Q 010675 330 KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKL 396 (504)
Q Consensus 330 ~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~L 396 (504)
.+=-.++.+++|+|.+++++|+.+.. .+..+++....-.. .+|..-||++|||+.+-+-.
T Consensus 99 ~~~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~~~~~----~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 99 PDDIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEKLAKK----YKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEChh
Confidence 34467788899999999999997643 33445544332222 34788999999999776543
No 47
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=89.69 E-value=0.2 Score=48.93 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=29.6
Q ss_pred CchhhhcCCCceeccccccccccccccCcceeecCCcCCeeeecCC
Q 010675 424 ETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDG 469 (504)
Q Consensus 424 ~~~~C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~gdg 469 (504)
+.+||...+..|+ ..|.++.++|.|.|+. |+...+||
T Consensus 186 ~~~~C~~~~~~c~-------~~C~~~~g~~~c~c~~--g~~~~~~~ 222 (224)
T cd01475 186 VPDLCATLSHVCQ-------QVCISTPGSYLCACTE--GYALLEDN 222 (224)
T ss_pred CchhhcCCCCCcc-------ceEEcCCCCEEeECCC--CccCCCCC
Confidence 4689988889999 5799999999999999 33334566
No 48
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=88.67 E-value=0.82 Score=42.79 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=52.5
Q ss_pred hhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEc
Q 010675 310 WWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (504)
Q Consensus 310 WW~Yv~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 388 (504)
.|.++...-..-.......+ .+=-.++.+++|+|.+++++++.+.. ....|+++.+.-.. .+|...|+++||
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~l~~~~~~a~~----~gi~gvPtfvv~ 174 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPA---VKAALRANTEEAIA----RGVFGVPTFVVD 174 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCCHH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 56666554333222221211 22245677889999999999998654 22334433332112 347889999999
Q ss_pred CeEeecccChHHHHH
Q 010675 389 DVQYRGKLERTAVLR 403 (504)
Q Consensus 389 ~~~yrG~L~~~~vl~ 403 (504)
|+.|.|.-..+-+..
T Consensus 175 g~~~~G~~~l~~~~~ 189 (192)
T cd03022 175 GEMFWGQDRLDMLEE 189 (192)
T ss_pred CeeecccccHHHHHH
Confidence 999999865555443
No 49
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=88.62 E-value=0.26 Score=32.83 Aligned_cols=21 Identities=38% Similarity=0.787 Sum_probs=17.9
Q ss_pred cccccccCcceeecCCcCCeeeecC
Q 010675 444 TACKDTFRGRLCECPIVKGVQYRGD 468 (504)
Q Consensus 444 ~~C~~t~~~~~C~Cp~~~~~~~~gd 468 (504)
..|+++..++.|.||. ||.|+
T Consensus 12 ~~C~~~~~~~~C~C~~----g~~g~ 32 (36)
T cd00053 12 GTCVNTPGSYRCVCPP----GYTGD 32 (36)
T ss_pred CEEecCCCCeEeECCC----CCccc
Confidence 5688888889999999 88877
No 50
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=0.31 Score=49.30 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=53.4
Q ss_pred CCcCCchhhhcCCCceeccccccccccccccCcceeecCCcCCeeeecCCcccc---cccCC---CccccCCCccccCCC
Q 010675 420 TGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISC---QAYGP---ARCSINNGGCWSDTK 493 (504)
Q Consensus 420 ~~~~~~~~C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~C---e~~~~---~~c~~~~gg~~~~~~ 493 (504)
..|.+.|||+.-.--|.. ..-|+||.+||.|++.+ ||++ |.-.| +|+-+ ..|.|+.|+|.|-|-
T Consensus 231 ~gCvDvnEC~~ep~~c~~-----~qfCvNteGSf~C~dk~----Gy~~-g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f 300 (350)
T KOG4260|consen 231 EGCVDVNECQNEPAPCKA-----HQFCVNTEGSFKCEDKE----GYKK-GVDECQFCADVCASKNRPCMNIDGQYRCVCF 300 (350)
T ss_pred cccccHHHHhcCCCCCCh-----hheeecCCCceEecccc----cccC-ChHHhhhhhhhcccCCCCcccCCccEEEEec
Confidence 457789999766444653 47899999999999987 7887 44444 34432 689999999999997
Q ss_pred CCc--eecccc
Q 010675 494 NGL--TFSACS 502 (504)
Q Consensus 494 ~~~--~~~~~~ 502 (504)
.++ ++..|.
T Consensus 301 ~~~~~~~g~cV 311 (350)
T KOG4260|consen 301 SGLIIIEGFCV 311 (350)
T ss_pred ccceeeeeeee
Confidence 773 345553
No 51
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=86.46 E-value=0.95 Score=42.32 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=55.4
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEE
Q 010675 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (504)
Q Consensus 309 ~WW~Yv~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~I 387 (504)
+++.+...+...-.......+ .+=-.++++++|+|.+++++-+.++. ....|+++....... +|.-.|+++|
T Consensus 101 ~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~---~~~~~~~~~~~a~~~----gv~GvP~~vv 173 (193)
T PF01323_consen 101 KADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPE---VKAALEEDTAEARQL----GVFGVPTFVV 173 (193)
T ss_dssp HHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHH---HHHHHHHHHHHHHHT----TCSSSSEEEE
T ss_pred hhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchH---HHHHHHHHHHHHHHc----CCcccCEEEE
Confidence 345555554333332222222 34456788899999999999887743 334555554433333 3678899999
Q ss_pred cCe-EeecccChHHHHHHH
Q 010675 388 NDV-QYRGKLERTAVLRAI 405 (504)
Q Consensus 388 N~~-~yrG~L~~~~vl~aI 405 (504)
||+ .+.|.-..+.+.++|
T Consensus 174 ~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 174 NGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp TTTEEEESCSSHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHh
Confidence 999 899997777776665
No 52
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=83.26 E-value=0.77 Score=30.98 Aligned_cols=20 Identities=35% Similarity=0.848 Sum_probs=17.0
Q ss_pred cccccccCcceeecCCcCCeeeec
Q 010675 444 TACKDTFRGRLCECPIVKGVQYRG 467 (504)
Q Consensus 444 ~~C~~t~~~~~C~Cp~~~~~~~~g 467 (504)
..|.++..++.|.||+ +|.|
T Consensus 15 ~~C~~~~~~~~C~C~~----g~~g 34 (38)
T cd00054 15 GTCVNTVGSYRCSCPP----GYTG 34 (38)
T ss_pred CEeECCCCCeEeECCC----CCcC
Confidence 4688888889999999 7886
No 53
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=81.13 E-value=0.79 Score=31.31 Aligned_cols=20 Identities=45% Similarity=0.956 Sum_probs=15.7
Q ss_pred cccccc-CcceeecCCcCCeeeecC
Q 010675 445 ACKDTF-RGRLCECPIVKGVQYRGD 468 (504)
Q Consensus 445 ~C~~t~-~~~~C~Cp~~~~~~~~gd 468 (504)
.|++.. .+|.|+||+ ||.|+
T Consensus 11 ~C~~~~~~~y~C~C~~----G~~G~ 31 (32)
T PF00008_consen 11 TCIDLPGGGYTCECPP----GYTGK 31 (32)
T ss_dssp EEEEESTSEEEEEEBT----TEEST
T ss_pred EEEeCCCCCEEeECCC----CCccC
Confidence 455555 789999999 89985
No 54
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=77.71 E-value=17 Score=38.70 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=50.4
Q ss_pred CeEEEEecCCCChHHHH--HHHHHcCCcEEEEEeCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHc
Q 010675 101 PTVLLLDRGECYFALKV--WHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178 (504)
Q Consensus 101 ~~IvLV~RG~CsF~~Kv--~nAQ~aGA~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~ 178 (504)
|++++..|-+=-...|. ..|.++||.|+|+-.+.+..+++-+.-.- ........||++.+...++..+..+
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy----~~~s~PtPIPva~v~en~~~y~~~~--- 162 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGY----SVSSSPTPIPVAVVPENYSRYAEEA--- 162 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccc----cCCCCCCCcceEEeccCcchhhccc---
Confidence 77777777544444443 47889999999998765544444321110 0111356899999999998766543
Q ss_pred CCEEEEEEEe
Q 010675 179 GEEVVIKLDW 188 (504)
Q Consensus 179 g~~V~v~l~~ 188 (504)
..|.+.++.
T Consensus 163 -~rvrl~vD~ 171 (486)
T COG4882 163 -GRVRLWVDA 171 (486)
T ss_pred -eeEEEEEec
Confidence 456666665
No 55
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.84 E-value=1.1 Score=45.54 Aligned_cols=40 Identities=20% Similarity=0.445 Sum_probs=32.7
Q ss_pred cee-ecCCcCCeeeecCCcccccccCC-----------CccccCCCccccCCCCCce
Q 010675 453 RLC-ECPIVKGVQYRGDGYISCQAYGP-----------ARCSINNGGCWSDTKNGLT 497 (504)
Q Consensus 453 ~~C-~Cp~~~~~~~~gdg~~~Ce~~~~-----------~~c~~~~gg~~~~~~~~~~ 497 (504)
+.| +|-. ||.=|- ..|.|||| +-|.|+.|+|.|+++.|+.
T Consensus 217 k~C~kCkk----GW~lde-~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~ 268 (350)
T KOG4260|consen 217 KGCSKCKK----GWKLDE-EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYK 268 (350)
T ss_pred CChhhhcc----cceecc-cccccHHHHhcCCCCCChhheeecCCCceEeccccccc
Confidence 345 6777 888774 78999997 6799999999999987764
No 56
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=73.38 E-value=4 Score=39.44 Aligned_cols=75 Identities=8% Similarity=-0.000 Sum_probs=45.5
Q ss_pred hhhhHHHHHHhhcCcchhhhhHHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEc
Q 010675 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIN 388 (504)
Q Consensus 309 ~WW~Yv~~F~~~C~~~~~~~~~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 388 (504)
.||.+...+..+ . ...++.=-.++.+..|+|.+++++|+.+.. ....+++..+.-. +.+|.--|+++||
T Consensus 106 ~~~~lf~~i~~~---~-~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~---~~~~v~~~~~~a~----~~gI~gtPtfiIn 174 (207)
T PRK10954 106 VTPPLFEGVQKT---Q-TIQSAADIRDVFIKAGVKGEDYDAAWNSFV---VKSLVAQQEKAAA----DLQLRGVPAMFVN 174 (207)
T ss_pred HHHHHHHHHHcc---C-CCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHH----HcCCCCCCEEEEC
Confidence 355566555332 1 122233245667889999999999998742 2334444333221 2347788999999
Q ss_pred CeEeec
Q 010675 389 DVQYRG 394 (504)
Q Consensus 389 ~~~yrG 394 (504)
|+...+
T Consensus 175 Gky~v~ 180 (207)
T PRK10954 175 GKYMVN 180 (207)
T ss_pred CEEEEc
Confidence 997654
No 57
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=72.88 E-value=1.9 Score=23.88 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=8.5
Q ss_pred eeecCCcCCeeeecC
Q 010675 454 LCECPIVKGVQYRGD 468 (504)
Q Consensus 454 ~C~Cp~~~~~~~~gd 468 (504)
.|+||+ ||.|+
T Consensus 1 ~C~C~~----G~~G~ 11 (13)
T PF12661_consen 1 TCQCPP----GWTGP 11 (13)
T ss_dssp EEEE-T----TEETT
T ss_pred CccCcC----CCcCC
Confidence 499999 99976
No 58
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=70.00 E-value=1.8 Score=30.60 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=18.2
Q ss_pred ccccCCCccccCCCccccCCCCCceec
Q 010675 473 CQAYGPARCSINNGGCWSDTKNGLTFS 499 (504)
Q Consensus 473 Ce~~~~~~c~~~~gg~~~~~~~~~~~~ 499 (504)
|+.+ |.+++|++.|.|..||...
T Consensus 8 C~h~----C~~~~g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 8 CSHI----CVNTPGSYRCSCPPGYKLA 30 (36)
T ss_dssp SSSE----EEEETTSEEEE-STTEEE-
T ss_pred cCCC----CccCCCceEeECCCCCEEC
Confidence 5555 9999999999999998774
No 59
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=66.62 E-value=2.9 Score=40.82 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.6
Q ss_pred CccccCCCccccCCCCCcee
Q 010675 479 ARCSINNGGCWSDTKNGLTF 498 (504)
Q Consensus 479 ~~c~~~~gg~~~~~~~~~~~ 498 (504)
+.|.++.|+|+|.|+.|++.
T Consensus 199 ~~C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 199 QVCISTPGSYLCACTEGYAL 218 (224)
T ss_pred ceEEcCCCCEEeECCCCccC
Confidence 35999999999999999864
No 60
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=64.36 E-value=4 Score=49.69 Aligned_cols=47 Identities=28% Similarity=0.560 Sum_probs=35.0
Q ss_pred cccccccccCcceeecCCcCCeeeecCCcccccccCC------------Ccccc-CCCccccCCCCC
Q 010675 442 NITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGP------------ARCSI-NNGGCWSDTKNG 495 (504)
Q Consensus 442 ~~~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce~~~~------------~~c~~-~~gg~~~~~~~~ 495 (504)
+..+|.--.+||.|+|-+ ||.| .|||-.-+ +.|.+ .+||..|.|..|
T Consensus 1249 nng~C~srEggYtCeCrp----g~tG---ehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1249 NNGRCRSREGGYTCECRP----GFTG---EHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCCceEEecCceeEEecC----Cccc---cceeeecccCccccceecCCCEEeecCCCceeccCCCc
Confidence 456777778899999999 9995 58983221 34444 689999999877
No 61
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.54 E-value=3.8 Score=35.32 Aligned_cols=27 Identities=44% Similarity=0.393 Sum_probs=13.3
Q ss_pred hhccchhHHHHHHHHHHHhhcccceeeE
Q 010675 9 MASSLSKKLTALLLILTVVFSSSVSARF 36 (504)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f 36 (504)
|+|... ++++|+|+++||.++.++|+=
T Consensus 1 MaSK~~-llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAF-LLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHH-HHHHHHHHHHHHHHhhhhhHH
Confidence 564443 455555555555444444443
No 62
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=60.35 E-value=13 Score=36.98 Aligned_cols=164 Identities=18% Similarity=0.379 Sum_probs=92.9
Q ss_pred cceEEEeecCCcccccchhhhHHHHHH-HHHHHHHHhhCCceEEeeEEEEecCccccccccccccccccCC-cc-cCCCC
Q 010675 198 RVEYELWTNSNDECGIRCDEQMNFVKN-FKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHG-RY-CAPDP 274 (504)
Q Consensus 198 ~Ve~~~w~ns~d~~g~~~d~s~~Fi~~-f~~~a~~l~~~g~~~Ftphy~~~~c~~~~~~~~~c~~~Ci~~G-rY-Ca~dP 274 (504)
+|...+...+- |-...+||++ ..++.+.+ ..+. ..-+++.|. +.+|.++| .. |.
T Consensus 40 ~v~ItlyyEaL------CPdc~~Fi~~qL~p~~~~~-~~~~--idl~lvPfG-----------na~~~~~~~~~~Cq--- 96 (220)
T KOG3160|consen 40 KVNITLYYEAL------CPDCSKFIRNQLYPFFDNL-LPSI--LDLTLVPFG-----------NAQCRNDGGTFTCQ--- 96 (220)
T ss_pred eeEEEEEEEec------CccHHHHHHHHHHHHHhhc-ccce--eEEEEEccC-----------CceeecCceEEEec---
Confidence 66766666663 3355666654 44444432 1123 333444443 34455553 11 32
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhhhhhcccCCcchhhhHHHHHHhhcCcchhhhh--HHHHHHHHHHcCCCHhhhccccC
Q 010675 275 EQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYS--KECAEEVMKSLDLPIEKIRKCIG 352 (504)
Q Consensus 275 d~~~~~~~sG~dVV~E~lRqlCi~~~~~~~~~~~~WW~Yv~~F~~~C~~~~~~~~--~~Cs~~v~k~l~id~~~i~~C~~ 352 (504)
.|.+-=.=|.-|-|+=+.-.. ...|..++ .|.+..+.+. .+|+ +..+++.++|++|..
T Consensus 97 --------HG~~EC~lN~LqaCvI~~l~~---~~~~l~~i-----~C~~~~~~~~~~~~C~----~~~~~~~~~i~~Ca~ 156 (220)
T KOG3160|consen 97 --------HGEEECKLNKLQACVIDTLPD---QSDQLPFI-----RCIQGKQKLSEAEDCL----EKYGLNEKKIRECAN 156 (220)
T ss_pred --------CCHHHHhhhHHHHHHHHhhhc---hHhhhcee-----hhhhcccchhHHHHHH----hhcCCCHHHHHHHhc
Confidence 344555556778887653211 11333333 3766534444 3454 556777999999997
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeecccChHHHHHHHHccCcC
Q 010675 353 DPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICAGFKE 411 (504)
Q Consensus 353 ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~L~~~~vl~aICagf~~ 411 (504)
... -+.||-..-. ... .....+-++|.+.|||..++-.+.. ...-||..|..
T Consensus 157 s~~---g~~L~~~~~~-~T~-~~~p~~~~VPwi~vNg~~~~~~~~~--l~~~~C~~~~~ 208 (220)
T KOG3160|consen 157 SRL---GAKLLLKYAQ-ETA-ALAPPHPWVPWILVNGQPLQDAEQD--LVTLLCEAYKG 208 (220)
T ss_pred Cch---HHHHHHHHHH-hhc-ccCCCCCCcCeEEECCcchHHHHHH--HHHHHHHHHhh
Confidence 532 2334433212 112 2346789999999999999877655 88889998864
No 63
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=55.00 E-value=5.4 Score=28.57 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=20.5
Q ss_pred cccccccc-CcceeecCCcCCeeeecCCccccc
Q 010675 443 ITACKDTF-RGRLCECPIVKGVQYRGDGYISCQ 474 (504)
Q Consensus 443 ~~~C~~t~-~~~~C~Cp~~~~~~~~gdg~~~Ce 474 (504)
.++|.+.. +.+.|.|-+ ||+.|| .+|+
T Consensus 10 NA~C~~~~dG~eecrCll----gyk~~~-~~C~ 37 (37)
T PF12946_consen 10 NAGCFRYDDGSEECRCLL----GYKKVG-GKCV 37 (37)
T ss_dssp TEEEEEETTSEEEEEE-T----TEEEET-TEEE
T ss_pred CcccEEcCCCCEEEEeeC----CccccC-CCcC
Confidence 46777776 788999999 999988 5563
No 64
>smart00181 EGF Epidermal growth factor-like domain.
Probab=49.11 E-value=9.4 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.9
Q ss_pred ccccCCCccccCCCCCcee-ccc
Q 010675 480 RCSINNGGCWSDTKNGLTF-SAC 501 (504)
Q Consensus 480 ~c~~~~gg~~~~~~~~~~~-~~~ 501 (504)
.|.+..|++.|.|..|+.. ..|
T Consensus 12 ~C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 12 TCINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred EEECCCCCeEeECCCCCccCCcc
Confidence 5888899999999999877 555
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=45.67 E-value=25 Score=27.79 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=20.7
Q ss_pred eEEcceEEEcCe-EeecccChHHHHHHH
Q 010675 379 VTILPTLVINDV-QYRGKLERTAVLRAI 405 (504)
Q Consensus 379 v~~~Ptl~IN~~-~yrG~L~~~~vl~aI 405 (504)
+...|+++|||. .+.|..+.+.+.++|
T Consensus 51 v~~vPt~~~~g~~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 51 IMAVPAIVINGDVEFIGAPTKEELVEAI 78 (82)
T ss_pred CccCCEEEECCEEEEecCCCHHHHHHHH
Confidence 677899999997 667877777666544
No 66
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=45.24 E-value=12 Score=30.05 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=16.5
Q ss_pred eEEcceEEEcCeE-eecccCh-HHHHH
Q 010675 379 VTILPTLVINDVQ-YRGKLER-TAVLR 403 (504)
Q Consensus 379 v~~~Ptl~IN~~~-yrG~L~~-~~vl~ 403 (504)
|...|+++|||+. |.|++.. +.+.+
T Consensus 47 v~~vPalvIng~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 47 VMSVPALVINGKVVFVGRVPSKEELKE 73 (76)
T ss_dssp -SSSSEEEETTEEEEESS--HHHHHHH
T ss_pred CCCCCEEEECCEEEEEecCCCHHHHHH
Confidence 6788999999985 8995444 44443
No 67
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=43.89 E-value=14 Score=25.08 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=16.8
Q ss_pred CccccCCCccccCCCCCce
Q 010675 479 ARCSINNGGCWSDTKNGLT 497 (504)
Q Consensus 479 ~~c~~~~gg~~~~~~~~~~ 497 (504)
..|.++.|++.|.|..|+.
T Consensus 15 ~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 15 GTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CEeECCCCCeEeECCCCCc
Confidence 3699999999999999886
No 68
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=54 Score=32.02 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=49.5
Q ss_pred hhhhHHHHH-HhhcCcchhhhhHHHHHHHHHHcCCCH-hhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEE
Q 010675 309 VWWDYVTDF-HIRCSMKEKRYSKECAEEVMKSLDLPI-EKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLV 386 (504)
Q Consensus 309 ~WW~Yv~~F-~~~C~~~~~~~~~~Cs~~v~k~l~id~-~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~ 386 (504)
++|.|.... +.+= ........|.....+...... .++..|.. + ......+-+++...+. -+|..=||++
T Consensus 150 ~y~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~a~~-----~gv~gTPt~~ 220 (244)
T COG1651 150 RYWAFHDALFGSQA--EAWAASILCAKDLAKADLAALDEGKKAKLN-Q-KACDALIAKNYKLAQQ-----LGVNGTPTFI 220 (244)
T ss_pred hHHHHHHHHhhccc--cchhhhhhhhhhhhhhhHHHHHhhhhhccC-h-HHHHHHHHHHHHHHHh-----cCCCcCCeEE
Confidence 477776653 3321 112233566666555444333 56677766 1 1122223333322221 2367889999
Q ss_pred EcCeEeecccChHHHHHHH
Q 010675 387 INDVQYRGKLERTAVLRAI 405 (504)
Q Consensus 387 IN~~~yrG~L~~~~vl~aI 405 (504)
|||..|.|.+..+.+.+.|
T Consensus 221 v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 221 VNGKLVPGLPDLDELKAII 239 (244)
T ss_pred ECCeeecCCCCHHHHHHHH
Confidence 9999999999877766655
No 69
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=42.12 E-value=46 Score=26.20 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=33.8
Q ss_pred HHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeecccChHHHHH
Q 010675 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLR 403 (504)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~L~~~~vl~ 403 (504)
.++|++.|++.+.++- . .++-+.++++. .+ ...+|.|+|||..+.|.++++.+-+
T Consensus 16 k~~L~~~~i~~~~~di-~-------~~~~~~~~~~~-~g------~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 16 KKALEEHGIAFEEINI-D-------EQPEAIDYVKA-QG------FRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred HHHHHHCCCceEEEEC-C-------CCHHHHHHHHH-cC------CcccCEEEECCCcEEeccCHHHHHh
Confidence 5678888888665431 1 23334444332 22 2568999999987777777766543
No 70
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=41.07 E-value=20 Score=37.71 Aligned_cols=54 Identities=26% Similarity=0.582 Sum_probs=37.0
Q ss_pred cccccccCcceeecCCcCCeeeecCCcccccccCC----------CccccCCCccccCCCCCceeccc
Q 010675 444 TACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGP----------ARCSINNGGCWSDTKNGLTFSAC 501 (504)
Q Consensus 444 ~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce~~~~----------~~c~~~~gg~~~~~~~~~~~~~~ 501 (504)
..|.++.+++.|.||+ +|.++--..|.++++ ..|.+..+.+.|.|..|++-..|
T Consensus 243 ~~c~~~~~~~~C~~~~----g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPE----GYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred CcccccCCceeeeCCC----CccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 6788888888899988 788774113343432 46666777788888888766554
No 71
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=39.35 E-value=29 Score=36.41 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=18.2
Q ss_pred CccccCCCccccCCCCCceecc
Q 010675 479 ARCSINNGGCWSDTKNGLTFSA 500 (504)
Q Consensus 479 ~~c~~~~gg~~~~~~~~~~~~~ 500 (504)
.+|.++.|+++|.|+.|++-++
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~ 264 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDA 264 (487)
T ss_pred CcccccCCceeeeCCCCccccc
Confidence 4788999999999988877655
No 72
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=38.73 E-value=67 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.1
Q ss_pred eEEcceEEEcCeEeecccChHHHHHHH
Q 010675 379 VTILPTLVINDVQYRGKLERTAVLRAI 405 (504)
Q Consensus 379 v~~~Ptl~IN~~~yrG~L~~~~vl~aI 405 (504)
+..+|+++++|..+.| .+++.+.+.|
T Consensus 48 ~~~vP~~~~~~~~~~g-~~~~~i~~~i 73 (74)
T TIGR02196 48 QRGVPVIVIGHKIIVG-FDPEKLDQLL 73 (74)
T ss_pred CCcccEEEECCEEEee-CCHHHHHHHh
Confidence 4578999999998888 4666555443
No 73
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=38.08 E-value=52 Score=30.55 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=44.6
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEE
Q 010675 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (504)
Q Consensus 309 ~WW~Yv~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~I 387 (504)
+.|+|+......-.......+ .+=..++.+++|+|.+++.+++.+... ...|+++++.-.. -+|.-.||++|
T Consensus 103 ~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~---~~~l~~~~~~a~~----~gv~g~Ptfvv 175 (193)
T cd03025 103 RLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEA---KQAIQEDQKLARE----LGINGFPTLVL 175 (193)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHH---HHHHHHHHHHHHH----cCCCccCEEEE
Confidence 456666664433222222222 223456778899999999999886542 2344443332222 23788999999
Q ss_pred cCeE
Q 010675 388 NDVQ 391 (504)
Q Consensus 388 N~~~ 391 (504)
++..
T Consensus 176 ~~~~ 179 (193)
T cd03025 176 EDDN 179 (193)
T ss_pred EeCC
Confidence 8764
No 74
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=34.87 E-value=3.1e+02 Score=25.15 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=48.5
Q ss_pred CCCCCCeEEEEe--cCCCChHHHHHHHHHcC-CcEEEEEeCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHH
Q 010675 96 SKFPRPTVLLLD--RGECYFALKVWHGQQAG-AAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSL 172 (504)
Q Consensus 96 ~~~~~~~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L 172 (504)
.++..++|+++- ||.|.=.-=.+.+.+.| |=++||. .+.|++++.+.- --.||.+-.. + .+
T Consensus 46 G~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~-~e~EpIla~Gai-----------~a~iPlv~~~--~--e~ 109 (131)
T COG1786 46 GESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVN-EEAEPILAVGAI-----------LAGIPLVDGV--D--EF 109 (131)
T ss_pred cccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhh-cCCcceeeehhh-----------hcCCceEecc--H--HH
Confidence 334449998886 77887777778888888 5566664 445777665421 1257765443 2 56
Q ss_pred HHHHHcCCEEEEE
Q 010675 173 KEALKKGEEVVIK 185 (504)
Q Consensus 173 ~~~l~~g~~V~v~ 185 (504)
.+.++.+..|.+.
T Consensus 110 ~~~l~~g~~v~v~ 122 (131)
T COG1786 110 FEELKTGDRVRVN 122 (131)
T ss_pred HHHhccCCEEEEc
Confidence 7788888776554
No 75
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=34.59 E-value=64 Score=25.34 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEee
Q 010675 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYR 393 (504)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yr 393 (504)
.++|++.||+.+.++ .. .++-..+++....+. ...|.|+|||..+-
T Consensus 18 ~~~L~~~gi~~~~~d-i~-------~~~~~~~el~~~~g~------~~vP~v~i~~~~iG 63 (73)
T cd03027 18 RLFLREKGLPYVEIN-ID-------IFPERKAELEERTGS------SVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHCCCceEEEE-CC-------CCHHHHHHHHHHhCC------CCcCEEEECCEEEe
Confidence 667888998876552 11 233445565555433 35699999997553
No 76
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=31.28 E-value=30 Score=40.85 Aligned_cols=43 Identities=37% Similarity=0.794 Sum_probs=36.3
Q ss_pred CCchhhhcCCCceeccccccccccccccCcceeecCCcCCeeeecCCcccccc
Q 010675 423 LETNECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQA 475 (504)
Q Consensus 423 ~~~~~C~~~ngGC~~~~~~~~~~C~~t~~~~~C~Cp~~~~~~~~gdg~~~Ce~ 475 (504)
...|.|+.+||||. +-|.....+..|.||. |..+..|| ++|..
T Consensus 668 ~~~n~C~~~n~~c~-------~KOG~~p~~~~c~c~~--~~~l~~~~-~~C~~ 710 (877)
T KOG1215|consen 668 TGVNPCESSNGGCS-------QLCLPRPQGSTCACPE--GYRLSPDG-KSCSS 710 (877)
T ss_pred CCCCcccccCCCCC-------eeeecCCCCCeeeCCC--CCeecCCC-CeecC
Confidence 47899999999999 6788877666999999 77788899 88877
No 77
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=30.50 E-value=73 Score=25.26 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeec
Q 010675 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (504)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 394 (504)
.++++..|++.+.++- . .++-+.+++....+ ...+|+|+|||...-|
T Consensus 16 ~~~L~~~~i~~~~~di--~------~~~~~~~~~~~~~g------~~~vP~i~i~g~~igg 62 (79)
T TIGR02181 16 KALLSSKGVTFTEIRV--D------GDPALRDEMMQRSG------RRTVPQIFIGDVHVGG 62 (79)
T ss_pred HHHHHHcCCCcEEEEe--c------CCHHHHHHHHHHhC------CCCcCEEEECCEEEcC
Confidence 5688888987666531 1 22333334433322 3678999999987644
No 78
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=28.90 E-value=84 Score=24.38 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=28.1
Q ss_pred HHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeec
Q 010675 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (504)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 394 (504)
.++|++++++.+.++- + .++-+.+++..+.+. ...+|.|+|||...-|
T Consensus 17 k~~L~~~~i~~~~i~i-------~-~~~~~~~~~~~~~~~-----~~~vP~v~i~g~~igg 64 (75)
T cd03418 17 KALLDKKGVDYEEIDV-------D-GDPALREEMINRSGG-----RRTVPQIFIGDVHIGG 64 (75)
T ss_pred HHHHHHCCCcEEEEEC-------C-CCHHHHHHHHHHhCC-----CCccCEEEECCEEEeC
Confidence 5678888987665422 1 122233343333322 1268999999987754
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=28.71 E-value=1.5e+02 Score=31.64 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=58.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCcee-cCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcC
Q 010675 101 PTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLIT-MDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKG 179 (504)
Q Consensus 101 ~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l~t-M~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g 179 (504)
..+.++.|+...+..+..++..+|+.+.+.++........ +..-.. ........||++.+.+..+..+......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (435)
T COG2234 104 LPAAFISRGNADLVETAPNAVEAGAAAFILYASVAAENFPKLGLIGT----GRALYLAEIPAVGVSKLVGNRLIFYKQAG 179 (435)
T ss_pred cccccccccccchhhcccchhhcccchheeecccccccccccccccc----cccccccccccccccccchhHHhhhhhcC
Confidence 4566778888999999999999999999999876442221 111000 01112468999999999999999888887
Q ss_pred CEEEEEEEe
Q 010675 180 EEVVIKLDW 188 (504)
Q Consensus 180 ~~V~v~l~~ 188 (504)
.........
T Consensus 180 ~~~~~~~~~ 188 (435)
T COG2234 180 GGLTSKNVA 188 (435)
T ss_pred cceEEEEEe
Confidence 544444443
No 80
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.47 E-value=84 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeec
Q 010675 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRG 394 (504)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 394 (504)
.+++++.|++.+.++- . .++-+.+++....++ ..+|.|+|||+.+=|
T Consensus 30 k~~L~~~~i~y~~idv--~------~~~~~~~~l~~~~g~------~tvP~vfi~g~~iGG 76 (90)
T cd03028 30 VQILNQLGVDFGTFDI--L------EDEEVRQGLKEYSNW------PTFPQLYVNGELVGG 76 (90)
T ss_pred HHHHHHcCCCeEEEEc--C------CCHHHHHHHHHHhCC------CCCCEEEECCEEEeC
Confidence 5689999998777752 1 123344444433332 467999999986643
No 81
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=26.96 E-value=56 Score=30.36 Aligned_cols=60 Identities=28% Similarity=0.606 Sum_probs=40.8
Q ss_pred CCceeccccccccccccccCccee--ecCCcCCeeeecCCcccccccCCCccc------------cCCCccccCCCCCce
Q 010675 432 NGGCWQDTQANITACKDTFRGRLC--ECPIVKGVQYRGDGYISCQAYGPARCS------------INNGGCWSDTKNGLT 497 (504)
Q Consensus 432 ngGC~~~~~~~~~~C~~t~~~~~C--~Cp~~~~~~~~gdg~~~Ce~~~~~~c~------------~~~gg~~~~~~~~~~ 497 (504)
-|||.......=+||++-.....| +||++. ..| | ..|....+ |. ..+|.|--+|..|+.
T Consensus 56 lGGC~gp~~~~C~aCr~~~~~g~Cv~~CP~~~-Y~~---~-~rCVt~~~--C~~~~~~~~~~~~~~~~~~Cv~~CP~gy~ 128 (149)
T PF00757_consen 56 LGGCSGPNPSDCYACRHFSYNGTCVEQCPPGK-YEF---G-RRCVTKEE--CPSMCESSKEYPFLIFNGSCVRECPSGYM 128 (149)
T ss_dssp ESEESSSSTTSESCESSEEETTEEESS-STT--EEE---T-TEEE-HSS--HHCCTTTTSTTSEEEETTEEESS-TTTEE
T ss_pred hhcCCCCCCCcCHHHhCcCcCCeecccCChhh-ccc---c-cEeecccc--CCchhhcccccceeeeCCcccccCCCCCE
Confidence 578986654446799988777799 999932 244 4 67886644 55 478889999988877
Q ss_pred e
Q 010675 498 F 498 (504)
Q Consensus 498 ~ 498 (504)
.
T Consensus 129 ~ 129 (149)
T PF00757_consen 129 E 129 (149)
T ss_dssp E
T ss_pred E
Confidence 6
No 82
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.67 E-value=23 Score=36.79 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=33.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCC---ceecCCCC
Q 010675 103 VLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP---LITMDSPE 145 (504)
Q Consensus 103 IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~---l~tM~~p~ 145 (504)
+.+++||+|+..+|.+.+++.|-+|||..++.... +.-|-.|+
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~~frlhymvapd 194 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGETFRLHYMVAPD 194 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCceEEEEEEeccC
Confidence 45678999999999999999999999999876433 23455453
No 83
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.25 E-value=54 Score=31.50 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=32.2
Q ss_pred HHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcC-----eEeecc
Q 010675 334 EEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIND-----VQYRGK 395 (504)
Q Consensus 334 ~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~-----~~yrG~ 395 (504)
.++...+|+|.+.++.-............|+++.+.-.. .+|+-.|+++||+ ..|.|+
T Consensus 136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~----~Gv~GVP~fvv~~~~~~~e~fwG~ 198 (209)
T cd03021 136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALK----YGAFGLPWIVVTNDKGKTEMFFGS 198 (209)
T ss_pred HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCCCccceecC
Confidence 456678899866665554311111112233333222122 2478999999974 688887
No 84
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.92 E-value=2.7e+02 Score=27.86 Aligned_cols=90 Identities=11% Similarity=0.153 Sum_probs=56.3
Q ss_pred hhhhHHHHHHhhcCcchhhhh-HHHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEE
Q 010675 309 VWWDYVTDFHIRCSMKEKRYS-KECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVI 387 (504)
Q Consensus 309 ~WW~Yv~~F~~~C~~~~~~~~-~~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~I 387 (504)
+||.|+...-.-=....+..+ ..=--++-..+|+|.+++++=..+.. ..+.+-.++..+|- .+|...|++++
T Consensus 118 ~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~L~s~~--~~~avr~d~~~A~e-----~gI~gVP~fv~ 190 (225)
T COG2761 118 AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKADLASDA--AKDAVRQDEAAAQE-----MGIRGVPTFVF 190 (225)
T ss_pred hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHHHHhChH--HHHHHHHHHHHHHH-----CCCccCceEEE
Confidence 699999886543332222222 44445666677999999988776532 23444455544442 56899999999
Q ss_pred -cCeEeecccChHHHHHHH
Q 010675 388 -NDVQYRGKLERTAVLRAI 405 (504)
Q Consensus 388 -N~~~yrG~L~~~~vl~aI 405 (504)
.+...+|-=+++....+|
T Consensus 191 d~~~~V~Gaq~~~v~~~al 209 (225)
T COG2761 191 DGKYAVSGAQPYDVLEDAL 209 (225)
T ss_pred cCcEeecCCCCHHHHHHHH
Confidence 566668876665444443
No 85
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=24.48 E-value=88 Score=27.94 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=25.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHcCCcEEEEE
Q 010675 101 PTVLLLDRGECYFALKVWHGQQAGAAAVLVA 131 (504)
Q Consensus 101 ~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~ 131 (504)
..|+++.+|+=.|..|-+ .++.||.|+|-+
T Consensus 82 ~iIv~~~~~~~~~~~K~w-L~~nGa~avIe~ 111 (113)
T PF13117_consen 82 KIIVLTGDGNLFFQYKNW-LRKNGATAVIEY 111 (113)
T ss_pred cEEEEcCCHHHHHHHHHH-HHHcCCceeEEe
Confidence 678888899988988887 688899999976
No 86
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=23.40 E-value=33 Score=40.30 Aligned_cols=63 Identities=25% Similarity=0.522 Sum_probs=34.7
Q ss_pred CCceecccc-ccccccccccCccee--ecCCcCCeeeecCCcccccccCC----Cccc-------cCCCccccCCCCCce
Q 010675 432 NGGCWQDTQ-ANITACKDTFRGRLC--ECPIVKGVQYRGDGYISCQAYGP----ARCS-------INNGGCWSDTKNGLT 497 (504)
Q Consensus 432 ngGC~~~~~-~~~~~C~~t~~~~~C--~Cp~~~~~~~~gdg~~~Ce~~~~----~~c~-------~~~gg~~~~~~~~~~ 497 (504)
-|||++... .-=+||+.-+..-+| +||+. .|.=.+ ..|..-.+ .+|+ +..|.|--+|.+|++
T Consensus 240 lGgC~~~~dptaC~aCr~~y~~G~CV~~Cp~~---~Y~~e~-~RCvt~~~C~~l~~~~~~~i~G~~~~~~Cv~~CPsGy~ 315 (1025)
T KOG4258|consen 240 LGGCSQPNDPTACVACRGLYDDGVCVEACPPD---YYLFEN-WRCVTREECALLHSLSNSVISGVIHAGQCVAKCPSGYK 315 (1025)
T ss_pred ccCcCCCCChhHhHHhhccccCCceeccCCcc---hhhhcc-ceeccHHHHHHhcCcccccccceeccccchhhCCCcce
Confidence 478986432 114566666554469 99992 222222 14544332 1122 245689999988875
Q ss_pred e
Q 010675 498 F 498 (504)
Q Consensus 498 ~ 498 (504)
-
T Consensus 316 ~ 316 (1025)
T KOG4258|consen 316 R 316 (1025)
T ss_pred e
Confidence 4
No 87
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=23.05 E-value=95 Score=25.06 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.6
Q ss_pred ceEEEcCeEeecccChHHHHHHH
Q 010675 383 PTLVINDVQYRGKLERTAVLRAI 405 (504)
Q Consensus 383 Ptl~IN~~~yrG~L~~~~vl~aI 405 (504)
|++.||+..| ++++++.|-+++
T Consensus 48 P~v~V~~~~~-~~~t~~~i~~~~ 69 (72)
T cd03082 48 PAALVGQRPV-DGATPAAVAAAV 69 (72)
T ss_pred CeEEECCEEe-CCcCHHHHHHHH
Confidence 9999999865 788988876554
No 88
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=22.73 E-value=1e+02 Score=31.81 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHcCCcEEEEEeCCCCC------ceecCCCCCCcccCCCccccCceEEEEeHHHH-HHHHHHHHcCCEE
Q 010675 112 YFALKVWHGQQAGAAAVLVADSVDEP------LITMDSPEESTDANGYVEKIGIPSALIDRAFG-LSLKEALKKGEEV 182 (504)
Q Consensus 112 sF~~Kv~nAQ~aGA~aVII~d~~~e~------l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG-~~L~~~l~~g~~V 182 (504)
+-.++++-|++|||.+|++.+..+.+ .-.|..|++- -.-...++||++.|-|.+- .......+.|..+
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDi 90 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGVDM 90 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCE
Confidence 55789999999999999997765432 3344444320 0112347999999988763 3334444556443
No 89
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=22.69 E-value=82 Score=29.74 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=40.1
Q ss_pred hhHHHHHHhhcCcchhhhhH-HHHHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcC
Q 010675 311 WDYVTDFHIRCSMKEKRYSK-ECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVIND 389 (504)
Q Consensus 311 W~Yv~~F~~~C~~~~~~~~~-~Cs~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~ 389 (504)
++|+..-...=......|++ +=..++.+++|+|.+++.+=+.... ....+++.+..++- -+|...||++|.+
T Consensus 83 ~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~--~~~~~~~D~~la~~-----m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 83 RRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDE--AKQAFQEDQQLARE-----MGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHH--HHHHHHHHHHHHHH-----TT-SSSSEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChH--HHHHHHHHHHHHHH-----cCCCCCCEEEEEe
Confidence 46777665543333445654 6677888889999999876555432 23344454444442 3378899998877
No 90
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=22.27 E-value=86 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.3
Q ss_pred eEEcceEEEcC-eEeecccCh-HHHHH
Q 010675 379 VTILPTLVIND-VQYRGKLER-TAVLR 403 (504)
Q Consensus 379 v~~~Ptl~IN~-~~yrG~L~~-~~vl~ 403 (504)
+...||++||| ..+.|.... +.+.+
T Consensus 47 v~~vPti~i~G~~~~~G~~~~~~~l~~ 73 (76)
T TIGR00412 47 VTATPGVAVDGELVIMGKIPSKEEIKE 73 (76)
T ss_pred CCcCCEEEECCEEEEEeccCCHHHHHH
Confidence 67899999998 556776433 44443
No 91
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=1.8e+02 Score=23.75 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCHhhhccccCCCcccccchhHHHHHHHHhcCCCCCceEEcceEEEcCeEeecccChHH
Q 010675 333 AEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTA 400 (504)
Q Consensus 333 s~~v~k~l~id~~~i~~C~~ds~~~~~N~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~L~~~~ 400 (504)
+.+.|+..|++.+.|+-=... ..-+++. ... ..| ...+|.|+||++..-|.-+..+
T Consensus 17 ak~~L~~~g~~~~~i~~~~~~------~~~~~~~-~~~-~~g----~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDDDE------PEEAREM-VKR-GKG----QRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred HHHHHHHcCCCcEEEEecCCc------HHHHHHH-HHH-hCC----CCCcCEEEECCEEEeCcccHHH
Confidence 367888999887766532221 1122222 222 222 3688999999997666434333
No 92
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=21.02 E-value=91 Score=26.05 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=18.7
Q ss_pred ceEEcceEEEcCe-EeecccChHHHH
Q 010675 378 DVTILPTLVINDV-QYRGKLERTAVL 402 (504)
Q Consensus 378 ~v~~~Ptl~IN~~-~yrG~L~~~~vl 402 (504)
+|...|+++|||. .++|..+.++++
T Consensus 62 ~V~~vPt~vidG~~~~~G~~~~~e~~ 87 (89)
T cd03026 62 GIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred CCccCCEEEECCEEEEeCCCCHHHHh
Confidence 3788999999986 458876666654
No 93
>PRK03955 hypothetical protein; Reviewed
Probab=20.67 E-value=6.6e+02 Score=22.98 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=41.4
Q ss_pred CCeEEEEe--cCCCChHHHHHHHHHcC-CcEEEEEeCCCCCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHH
Q 010675 100 RPTVLLLD--RGECYFALKVWHGQQAG-AAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEAL 176 (504)
Q Consensus 100 ~~~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVII~d~~~e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l 176 (504)
.+||++.. ||.|.=.-=.+.+.+.| |=++||... .+++.+.+.- --.||.+.-.. .+.|
T Consensus 50 ~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~-~~~ils~GaI-----------vAgIP~V~~~~------~~~l 111 (131)
T PRK03955 50 KGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLE-AEPIVATGAI-----------ISGIPLVDKVD------ISKL 111 (131)
T ss_pred CCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEec-CCceeEeeee-----------ecCCceEcccc------ceec
Confidence 38998876 77887555555555444 446666654 3555554321 12688886222 6688
Q ss_pred HcCCEEEEE
Q 010675 177 KKGEEVVIK 185 (504)
Q Consensus 177 ~~g~~V~v~ 185 (504)
+.|..|++.
T Consensus 112 ~~G~~V~Vd 120 (131)
T PRK03955 112 KDGDRVVVD 120 (131)
T ss_pred CCCCEEEEe
Confidence 889887664
Done!