Query 010677
Match_columns 504
No_of_seqs 301 out of 2029
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 7.1E-67 1.5E-71 548.9 41.9 359 31-504 63-447 (482)
2 cd06098 phytepsin Phytepsin, a 100.0 5.9E-64 1.3E-68 506.7 36.2 317 70-502 1-317 (317)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 1.3E-63 2.9E-68 506.2 38.4 324 74-502 1-325 (325)
4 cd05486 Cathespin_E Cathepsin 100.0 3.4E-63 7.4E-68 501.1 36.0 316 80-502 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 1E-62 2.2E-67 499.7 39.0 325 72-503 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.1E-61 2.4E-66 492.4 38.1 327 70-502 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.4E-61 3.1E-66 489.5 37.6 316 71-502 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 4.4E-61 9.6E-66 486.4 37.4 320 70-502 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 8E-61 1.7E-65 484.3 38.6 317 77-503 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 2.6E-60 5.7E-65 495.6 39.7 327 62-504 122-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-59 2.6E-64 489.8 39.8 327 62-504 121-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 2.9E-56 6.4E-61 450.2 30.5 316 79-503 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 7.9E-53 1.7E-57 418.0 30.8 219 80-306 1-225 (278)
14 cd05473 beta_secretase_like Be 100.0 1.4E-51 3E-56 424.3 32.3 316 78-504 2-346 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 6.3E-51 1.4E-55 423.4 32.4 321 67-503 34-392 (398)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.6E-50 5.6E-55 408.7 31.0 282 78-503 2-323 (326)
17 cd05474 SAP_like SAPs, pepsin- 100.0 9.1E-50 2E-54 399.3 33.2 278 79-503 2-295 (295)
18 PLN03146 aspartyl protease fam 100.0 1.1E-49 2.4E-54 416.5 33.9 304 76-503 81-426 (431)
19 cd05472 cnd41_like Chloroplast 100.0 8.1E-49 1.8E-53 393.3 29.6 287 79-503 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 1E-46 2.3E-51 374.0 34.2 227 80-308 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.5E-46 5.4E-51 368.8 27.7 248 79-504 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 1E-45 2.2E-50 365.9 28.9 258 78-504 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 4.3E-42 9.3E-47 351.8 27.3 313 86-503 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.4E-22 3E-27 172.2 12.8 108 82-190 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 1.2E-20 2.6E-25 172.0 15.8 136 80-238 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 1.9E-17 4E-22 150.8 15.0 153 258-502 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.1 6.6E-06 1.4E-10 67.3 6.9 92 79-192 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.5 0.00049 1.1E-08 59.3 8.8 101 70-192 2-103 (121)
29 PF05184 SapB_1: Saposin-like 97.2 0.00062 1.3E-08 46.0 4.1 37 377-413 3-39 (39)
30 PF13650 Asp_protease_2: Aspar 96.8 0.0076 1.6E-07 48.3 8.2 88 82-191 1-89 (90)
31 PF11925 DUF3443: Protein of u 96.1 0.061 1.3E-06 54.2 11.5 196 79-296 23-272 (370)
32 cd05479 RP_DDI RP_DDI; retrope 95.8 0.049 1.1E-06 47.0 8.4 92 76-192 13-107 (124)
33 COG3577 Predicted aspartyl pro 95.2 0.079 1.7E-06 49.0 7.6 92 65-171 91-183 (215)
34 PF03489 SapB_2: Saposin-like 94.6 0.0083 1.8E-07 39.4 -0.3 34 313-346 2-35 (35)
35 cd05484 retropepsin_like_LTR_2 94.5 0.16 3.6E-06 41.0 7.2 75 80-172 1-78 (91)
36 cd05479 RP_DDI RP_DDI; retrope 93.1 0.66 1.4E-05 39.9 8.7 25 476-500 100-124 (124)
37 cd06095 RP_RTVL_H_like Retrope 92.4 0.63 1.4E-05 37.2 7.2 81 83-192 2-84 (86)
38 PF08284 RVP_2: Retroviral asp 91.5 0.61 1.3E-05 40.9 6.6 27 476-502 105-131 (135)
39 TIGR02281 clan_AA_DTGA clan AA 91.2 3.3 7.1E-05 35.5 10.8 36 256-301 9-44 (121)
40 TIGR03698 clan_AA_DTGF clan AA 83.2 6.2 0.00013 33.0 7.5 23 476-498 85-107 (107)
41 PF13975 gag-asp_proteas: gag- 83.1 1.9 4.1E-05 33.2 4.0 34 76-111 5-38 (72)
42 PF07966 A1_Propeptide: A1 Pro 82.5 1.1 2.4E-05 28.0 2.0 23 32-54 1-23 (29)
43 smart00741 SapB Saposin (B) Do 82.2 2 4.3E-05 32.7 3.8 37 377-413 2-38 (76)
44 PF13650 Asp_protease_2: Aspar 80.0 2.4 5.1E-05 33.5 3.8 29 266-301 3-31 (90)
45 PF12384 Peptidase_A2B: Ty3 tr 77.1 13 0.00029 33.4 7.7 24 279-302 45-68 (177)
46 PF13975 gag-asp_proteas: gag- 76.4 4.4 9.6E-05 31.1 4.1 29 266-301 13-41 (72)
47 PF09668 Asp_protease: Asparty 76.2 5.3 0.00012 34.4 4.9 91 77-191 22-114 (124)
48 cd05484 retropepsin_like_LTR_2 74.9 4.2 9.1E-05 32.6 3.8 30 265-301 4-33 (91)
49 PF00077 RVP: Retroviral aspar 74.5 4 8.6E-05 33.2 3.7 29 81-111 7-35 (100)
50 cd05483 retropepsin_like_bacte 69.6 6.8 0.00015 31.1 4.0 30 265-301 6-35 (96)
51 cd06095 RP_RTVL_H_like Retrope 66.7 6.9 0.00015 31.1 3.3 29 266-301 3-31 (86)
52 KOG1340 Prosaposin [Lipid tran 65.2 6 0.00013 37.5 3.1 88 314-413 78-166 (218)
53 cd05482 HIV_retropepsin_like R 58.5 13 0.00028 29.9 3.5 27 83-111 2-28 (87)
54 PF08284 RVP_2: Retroviral asp 56.9 58 0.0013 28.4 7.7 31 77-109 19-49 (135)
55 PF00077 RVP: Retroviral aspar 54.2 11 0.00023 30.7 2.4 27 265-298 9-35 (100)
56 PF07172 GRP: Glycine rich pro 52.6 9.6 0.00021 31.2 1.9 16 1-16 1-16 (95)
57 smart00741 SapB Saposin (B) Do 51.8 5.2 0.00011 30.2 0.2 36 311-346 41-76 (76)
58 cd05481 retropepsin_like_LTR_1 47.2 20 0.00044 29.0 3.0 22 281-302 12-33 (93)
59 PF09668 Asp_protease: Asparty 44.8 26 0.00056 30.2 3.4 30 265-301 28-57 (124)
60 PF02160 Peptidase_A3: Caulifl 43.8 45 0.00096 31.3 5.0 50 428-500 66-115 (201)
61 COG3577 Predicted aspartyl pro 41.0 37 0.00079 31.8 3.9 36 256-301 103-138 (215)
62 PF12384 Peptidase_A2B: Ty3 tr 39.5 37 0.00081 30.6 3.6 31 77-109 32-62 (177)
63 KOG1340 Prosaposin [Lipid tran 38.9 11 0.00024 35.7 0.3 44 304-347 161-204 (218)
64 COG5550 Predicted aspartyl pro 35.7 23 0.00049 30.3 1.6 21 282-302 29-50 (125)
65 TIGR03698 clan_AA_DTGF clan AA 28.0 60 0.0013 27.0 3.0 66 82-163 2-73 (107)
66 cd06094 RP_Saci_like RP_Saci_l 24.2 2.4E+02 0.0051 22.8 5.5 22 91-112 8-29 (89)
67 cd05471 pepsin_like Pepsin-lik 20.1 1.4E+02 0.003 28.8 4.3 27 476-502 257-283 (283)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.1e-67 Score=548.94 Aligned_cols=359 Identities=36% Similarity=0.685 Sum_probs=305.0
Q ss_pred ceEEEeeeeeccchhhhHHhc---ccccc---ccc--cc-CCCCCceeEeceecCCceEEEEEEecCCCceEEEEEcCCC
Q 010677 31 GLLRIQLKKRQLGINTINAAR---LITKN---EVH--NR-FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGS 101 (504)
Q Consensus 31 ~~~~ipL~~~~~~~~~~~~~~---~~~~~---~~~--~~-~~~~~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGS 101 (504)
.++|+||+|.++.|+.+.+.+ +..+. +.. .+ ........+||.|+.|.+|+++|+||||||+|+|++||||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGS 142 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGS 142 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeCCC
Confidence 689999999887665443331 11010 000 00 0011457899999999999999999999999999999999
Q ss_pred CCeeEeCCCCCCCccccCCCCCCCCCCCceee--cCc---eEEEEecceeEEEEEEEEEEEECCeeccccEEEEEEeeCC
Q 010677 102 SNLWVPSSKCLFSISCYLHSRYRARLSRTYTK--IGV---PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL 176 (504)
Q Consensus 102 s~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~--~~~---~~~i~Yg~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~ 176 (504)
+++|||+..|. ...|..|+.|||++|+||+. .+. .+.+.||+|++.|.+++|+|++|++.+++|.||++....+
T Consensus 143 S~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~ 221 (482)
T PTZ00165 143 SNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESL 221 (482)
T ss_pred CCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccc
Confidence 99999999997 56899999999999999998 665 6889999999999999999999999999999999998766
Q ss_pred ccccccccceeeecccCcCc---CCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEEECccCCCCc--ccceeEE
Q 010677 177 LPFLALQFDGILGLGFRDIA---AGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHF--RGSHIYV 251 (504)
Q Consensus 177 ~~~~~~~~dGIlGLg~~~~s---~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGgid~~~~--~g~l~~~ 251 (504)
..|....+|||||||++..+ ..+..|++++|++||+|++++||+||.++.+ .+|+|+|||+|++++ .|++.|+
T Consensus 222 ~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~ 299 (482)
T PTZ00165 222 HPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWF 299 (482)
T ss_pred cccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEE
Confidence 56777789999999998763 3457889999999999999999999986532 379999999999877 5789999
Q ss_pred ecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccccccccchhhhhcchhhHhhhh
Q 010677 252 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLI 331 (504)
Q Consensus 252 pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~ 331 (504)
|+.+.+||+|.+++|.++++.+..+..++.||+||||+++++|++++++|.+++++.
T Consensus 300 Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------------------- 356 (482)
T PTZ00165 300 PVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----------------------- 356 (482)
T ss_pred EccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------------
Confidence 999999999999999999988776667889999999999999999999999887543
Q ss_pred cCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhcc
Q 010677 332 SGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEV 411 (504)
Q Consensus 332 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 411 (504)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEcCCCCCCCceEEEEECCE-----EEEeCcccceEeec--cCcceeEEEeeEeccCCCCCCCeEEeCHhhh
Q 010677 412 LPNPMGKSFINCDDIASMPYVSFTIGNR-----SFPLSPEQYIFKIE--EGHSTICISGFIALDVPPPQGPLWVLGDMFL 484 (504)
Q Consensus 412 ~~~~~~~~~~~C~~~~~~P~l~f~~~g~-----~~~l~p~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl 484 (504)
.+|+.++.+|+|+|+|+|. +|.|+|++|+++.. ......|+++|...+.+.+.++.||||++||
T Consensus 357 ---------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Fl 427 (482)
T PTZ00165 357 ---------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFI 427 (482)
T ss_pred ---------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhh
Confidence 2688778899999999864 89999999999742 3345689999999887666678999999999
Q ss_pred ccEEEEEeCCCCeEEEEecC
Q 010677 485 RAYHTVFDFGNLQIGFAEAA 504 (504)
Q Consensus 485 ~~~y~vfD~~~~~iGfa~~~ 504 (504)
|+||+|||.+|+|||||+++
T Consensus 428 r~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 428 RKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred eeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999975
No 2
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.9e-64 Score=506.67 Aligned_cols=317 Identities=64% Similarity=1.233 Sum_probs=284.4
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEE
Q 010677 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 149 (504)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G 149 (504)
++|.|+.|.+|+++|+||||||+++|++||||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964458999999999999999999999999999999999
Q ss_pred EEEEEEEEECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCC
Q 010677 150 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 229 (504)
Q Consensus 150 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 229 (504)
.+++|+|++|+..++++.||++....+..|....++||||||++..+.....|++.+|++||+|++++||+||.+.....
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998876655666778999999999877777788999999999999999999998754334
Q ss_pred CccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcccc
Q 010677 230 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 309 (504)
Q Consensus 230 ~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~ 309 (504)
..|+|+|||+|+++|.|+++|+|+...++|.+.+++|.|+++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5799999999999999999999999889999999999999998776667788999999999999998765431
Q ss_pred ccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHH
Q 010677 310 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 389 (504)
Q Consensus 310 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (504)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccC
Q 010677 390 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 469 (504)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~ 469 (504)
+.+||+....+|+|+|+|+|++++|+|++|+++..++....|+++|+..+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 345888777899999999999999999999998665555789999988765
Q ss_pred CCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 470 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 470 ~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
+.+.++.||||++|||++|+|||++|+|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 444556899999999999999999999999996
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.3e-63 Score=506.17 Aligned_cols=324 Identities=48% Similarity=0.960 Sum_probs=286.0
Q ss_pred ecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCC-CccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEE
Q 010677 74 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFS 152 (504)
Q Consensus 74 ~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~ 152 (504)
|+.|.+|+++|.||||||+|.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 236888999999999999999999999999999999999
Q ss_pred EEEEEECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCcc
Q 010677 153 QDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 232 (504)
Q Consensus 153 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 232 (504)
+|+|+||+..++++.||++....+..+....++||||||++..+.....|++++|++||.|++++||+||.++.+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999887777789999999999999999999998754333479
Q ss_pred EEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccccc
Q 010677 233 EIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVS 312 (504)
Q Consensus 233 ~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~ 312 (504)
+|+|||+|++++.|++.|+|+.+..+|.|++++|.|++... .+..+..++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999987643 3455678999999999999999999999888543
Q ss_pred cccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHH
Q 010677 313 MQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQL 392 (504)
Q Consensus 313 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (504)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCC
Q 010677 393 KQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPP 472 (504)
Q Consensus 393 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~ 472 (504)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++........|+++|+..+.+.+
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 112356889999888899999999999999999999997654445689999988776544
Q ss_pred CCCeEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 473 QGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 473 ~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
..+.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 567899999999999999999999999996
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.4e-63 Score=501.13 Aligned_cols=316 Identities=43% Similarity=0.864 Sum_probs=281.3
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEEEEEEC
Q 010677 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIG 159 (504)
Q Consensus 80 Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 159 (504)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999997 5679999999999999999999999999999999999999999999
Q ss_pred CeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEEECcc
Q 010677 160 DMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGF 239 (504)
Q Consensus 160 ~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGgi 239 (504)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||.++++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665455566789999999998876677889999999999999999999987543345799999999
Q ss_pred CCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccccccccchhh
Q 010677 240 DWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVV 319 (504)
Q Consensus 240 d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~ 319 (504)
|+++|.|++.|+|+.+.++|.|.+++|.|+++.+. +..+..++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998763 345678999999999999999999998877544
Q ss_pred hhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHH
Q 010677 320 FEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKE 399 (504)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (504)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEe
Q 010677 400 AIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVL 479 (504)
Q Consensus 400 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 479 (504)
...+.|.+||+....+|+|+|+|+|++++|+|++|++.........|+++|+..++.+..++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998888999999999999999999999875333446899999887654445568999
Q ss_pred CHhhhccEEEEEeCCCCeEEEEe
Q 010677 480 GDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 480 G~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
|++|||++|+|||.+++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1e-62 Score=499.72 Aligned_cols=325 Identities=44% Similarity=0.890 Sum_probs=288.0
Q ss_pred ceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCC-ccccCCCCCCCCCCCceeecCceEEEEecceeEEEE
Q 010677 72 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFS-ISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGF 150 (504)
Q Consensus 72 l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~-~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~ 150 (504)
|.|+.|..|+++|+||||||+++|++||||+++||++..|... ..|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 4678899999999999999999999999999999999999731 468889999999999999999999999999999999
Q ss_pred EEEEEEEECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010677 151 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 230 (504)
Q Consensus 151 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 230 (504)
+++|+|++++..++ +.||++.......+....+|||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 78999987654445556789999999988776677899999999999999999999987643345
Q ss_pred ccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccc
Q 010677 231 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 310 (504)
Q Consensus 231 ~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~ 310 (504)
.|+|+|||+|+++|.|+++|+|+...++|+|.++++.|++..+. +..+..++|||||+++++|.+++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999989999999999999998763 4456789999999999999999999999886550
Q ss_pred cccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHH
Q 010677 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 390 (504)
Q Consensus 311 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (504)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCC
Q 010677 391 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 470 (504)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~ 470 (504)
..+.|.+||+....+|+|+|+|++.+++|++++|+++..+.....|+++|+..+.+
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 13568899998888999999999999999999999986655567899999987754
Q ss_pred CCCCCeEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 471 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 471 ~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
.+.++.||||++|||++|+|||++++|||||+|
T Consensus 294 ~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 294 PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 445568999999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.1e-61 Score=492.44 Aligned_cols=327 Identities=48% Similarity=0.966 Sum_probs=289.8
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCC-CccccCCCCCCCCCCCceeecCceEEEEecceeEE
Q 010677 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQIS 148 (504)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~ 148 (504)
.+|.|+.|..|+++|+||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999962 23688888999999999999999999999999999
Q ss_pred EEEEEEEEEECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCC
Q 010677 149 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNS 228 (504)
Q Consensus 149 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~ 228 (504)
|.+++|++++++..++++.||++..+.+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999877654455567899999999887766778899999999999999999999876443
Q ss_pred CCccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccc
Q 010677 229 EVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 308 (504)
Q Consensus 229 ~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~ 308 (504)
...|+|+|||+|++++.|+++|+|+.+.++|.|.++++.+++..+ +..+..+||||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 457999999999999999999999998999999999999999875 355678999999999999999999999888654
Q ss_pred cccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHH
Q 010677 309 GIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWI 388 (504)
Q Consensus 309 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (504)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEecc
Q 010677 389 QMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALD 468 (504)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~ 468 (504)
...+.|.+||+....+|+|+|+|+|+++.|+|++|+++....+...|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 0125688999987889999999999999999999999876555578999998776
Q ss_pred CCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 469 VPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 469 ~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
+++..++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5444556899999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-61 Score=489.55 Aligned_cols=316 Identities=45% Similarity=0.832 Sum_probs=282.2
Q ss_pred eceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEE
Q 010677 71 YLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGF 150 (504)
Q Consensus 71 ~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~ 150 (504)
||.|+.+..|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999997 4579889999999999999999999999999999999
Q ss_pred EEEEEEEECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010677 151 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 230 (504)
Q Consensus 151 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 230 (504)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+.. ..
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--QQ 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC--CC
Confidence 9999999999999999999998765533333457999999998877667788999999999999999999998863 23
Q ss_pred ccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccc
Q 010677 231 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 310 (504)
Q Consensus 231 ~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~ 310 (504)
+|+|+|||+|+++|.|+++|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999999874 3456789999999999999999999999886540
Q ss_pred cccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHH
Q 010677 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 390 (504)
Q Consensus 311 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (504)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCC
Q 010677 391 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 470 (504)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~ 470 (504)
...+.|.+||+....+|.|+|+|+|++|+|+|++|+.+. ...|+++|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 123568899998888999999999999999999999864 368999887543
Q ss_pred CCCCCeEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 471 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 471 ~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
..+.||||++|||++|+|||++++|||||+
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 246899999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4.4e-61 Score=486.44 Aligned_cols=320 Identities=43% Similarity=0.819 Sum_probs=284.5
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEE
Q 010677 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 149 (504)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G 149 (504)
+||.|+.|..|+++|+||||+|++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5789999999999999999999999999999999999999997 567998899999999999999999999999999999
Q ss_pred EEEEEEEEECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCC
Q 010677 150 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 229 (504)
Q Consensus 150 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 229 (504)
.+++|++++++..++++.|+++....+..+.....+||||||++..+.....|.+.+|++||.|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766544555677999999998877666778889999999999999999999753 2
Q ss_pred CccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcccc
Q 010677 230 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 309 (504)
Q Consensus 230 ~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~ 309 (504)
..|+|+|||+|++++.|+++|+|+...++|.|.+++|+|++..+. ..+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~--~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELE--LENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEec--cCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999988999999999999998764 345679999999999999999999998886540
Q ss_pred ccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHH
Q 010677 310 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 389 (504)
Q Consensus 310 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (504)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccC
Q 010677 390 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 469 (504)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~ 469 (504)
...+.|.+||+....+|+|+|+|+|+++.|+|++|+++.. +.|++.+...+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcC
Confidence 1245688999988889999999999999999999998532 479999987665
Q ss_pred CCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 470 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 470 ~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
+...++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 433456899999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8e-61 Score=484.33 Aligned_cols=317 Identities=43% Similarity=0.850 Sum_probs=281.6
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEEEE
Q 010677 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNV 156 (504)
Q Consensus 77 ~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v 156 (504)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 568999999999999999999999999999999997 4579989999999999999999999999999999999999999
Q ss_pred EECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEEE
Q 010677 157 KIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 236 (504)
Q Consensus 157 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 236 (504)
++|+..++++.||++....+..+.....+||||||++..+.....+++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544445567999999998887777789999999999999999999998753 223799999
Q ss_pred CccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccccccccc
Q 010677 237 GGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCK 316 (504)
Q Consensus 237 Ggid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~ 316 (504)
||+|++++.|++.|+|+...++|.|.++++.|++..+..+..+..+||||||+++++|++++++|.+.+++..
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ------- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-------
Confidence 9999999999999999998999999999999999887655667789999999999999999999999886540
Q ss_pred hhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhh
Q 010677 317 TVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQK 396 (504)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (504)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCC-C
Q 010677 397 TKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQG-P 475 (504)
Q Consensus 397 ~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~-~ 475 (504)
...+.|.+||+....+|+|+|+|+|+++.|+|++|+... .+.|+++|+....+...+ +
T Consensus 232 -----------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 232 -----------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred -----------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 124568999998888999999999999999999999864 358999887654333222 5
Q ss_pred eEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 476 LWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 476 ~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.6e-60 Score=495.64 Aligned_cols=327 Identities=33% Similarity=0.642 Sum_probs=282.9
Q ss_pred CCCCCceeEeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEE
Q 010677 62 FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIH 141 (504)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~ 141 (504)
+..+....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.
T Consensus 122 ~~~~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~ 200 (453)
T PTZ00147 122 YLGSEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMN 200 (453)
T ss_pred cccCCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEE
Confidence 334577889999999999999999999999999999999999999999997 5679999999999999999999999999
Q ss_pred ecceeEEEEEEEEEEEECCeeccccEEEEEEeeCCc--cccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEE
Q 010677 142 YGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLL--PFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFS 219 (504)
Q Consensus 142 Yg~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS 219 (504)
|++|++.|.+++|+|++|+.+++ ..|+++....+. .+....+|||||||++..+.....|++.+|++||.|++++||
T Consensus 201 Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS 279 (453)
T PTZ00147 201 YVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFT 279 (453)
T ss_pred eCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEE
Confidence 99999999999999999999988 578888765442 234456899999999988777788999999999999999999
Q ss_pred EEecCCCCCCCccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHH
Q 010677 220 LWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVA 299 (504)
Q Consensus 220 l~l~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~ 299 (504)
+||++.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....+||||||+++++|+++++
T Consensus 280 ~~L~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ 352 (453)
T PTZ00147 280 FYLPPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLN 352 (453)
T ss_pred EEecCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHH
Confidence 9998643 237999999999999999999999998899999998 5776643 34578999999999999999999
Q ss_pred HHHHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchh
Q 010677 300 QINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCA 379 (504)
Q Consensus 300 ~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (504)
++.+++++..
T Consensus 353 ai~~~l~~~~---------------------------------------------------------------------- 362 (453)
T PTZ00147 353 KFVESLDVFK---------------------------------------------------------------------- 362 (453)
T ss_pred HHHHHhCCee----------------------------------------------------------------------
Confidence 9999886540
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccee
Q 010677 380 FCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTI 459 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~ 459 (504)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+.+..+.....
T Consensus 363 --------------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~ 408 (453)
T PTZ00147 363 --------------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSAL 408 (453)
T ss_pred --------------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcE
Confidence 0 113457889996 579999999999999999999998655444568
Q ss_pred EEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEecC
Q 010677 460 CISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 504 (504)
Q Consensus 460 C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~~ 504 (504)
|+++|+..+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 409 C~~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 409 CMLNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9998886542 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-59 Score=489.77 Aligned_cols=327 Identities=31% Similarity=0.647 Sum_probs=281.0
Q ss_pred CCCCCceeEeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEE
Q 010677 62 FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIH 141 (504)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~ 141 (504)
+..+....++|.|+.+.+|+++|+||||||+|+|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.
T Consensus 121 ~~~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~ 199 (450)
T PTZ00013 121 YLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDIT 199 (450)
T ss_pred ccccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEE
Confidence 455678889999999999999999999999999999999999999999997 5689999999999999999999999999
Q ss_pred ecceeEEEEEEEEEEEECCeeccccEEEEEEeeCC--ccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEE
Q 010677 142 YGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL--LPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFS 219 (504)
Q Consensus 142 Yg~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS 219 (504)
|++|++.|.+++|+|++|+.+++ ..|+++....+ ..+....+|||||||++..+.....|++++|++||.|++++||
T Consensus 200 YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS 278 (450)
T PTZ00013 200 YGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFT 278 (450)
T ss_pred ECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEE
Confidence 99999999999999999999987 57888765432 2234457899999999988766778999999999999999999
Q ss_pred EEecCCCCCCCccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHH
Q 010677 220 LWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVA 299 (504)
Q Consensus 220 l~l~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~ 299 (504)
+||++.. ...|+|+|||+|+++|.|++.|+|+....+|.|.++ +.++.... ....+++||||+++++|+++++
T Consensus 279 ~~L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~ 351 (450)
T PTZ00013 279 FYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLN 351 (450)
T ss_pred EEecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHH
Confidence 9998642 237999999999999999999999998899999998 66654432 4567999999999999999999
Q ss_pred HHHHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchh
Q 010677 300 QINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCA 379 (504)
Q Consensus 300 ~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (504)
++.+++++..
T Consensus 352 ~i~~~l~~~~---------------------------------------------------------------------- 361 (450)
T PTZ00013 352 KFFANLNVIK---------------------------------------------------------------------- 361 (450)
T ss_pred HHHHHhCCee----------------------------------------------------------------------
Confidence 9998886540
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccee
Q 010677 380 FCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTI 459 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~ 459 (504)
. ...+.|.++|+. ..+|+|+|.|+|.+++|+|++|+.+........
T Consensus 362 --------------------------------~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~ 407 (450)
T PTZ00013 362 --------------------------------V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTL 407 (450)
T ss_pred --------------------------------c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCe
Confidence 0 123458889985 578999999999999999999998644333468
Q ss_pred EEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEecC
Q 010677 460 CISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 504 (504)
Q Consensus 460 C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~~ 504 (504)
|++++...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 408 C~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 408 CMITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9998876542 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.9e-56 Score=450.19 Aligned_cols=316 Identities=39% Similarity=0.737 Sum_probs=280.6
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEEEEEE
Q 010677 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKI 158 (504)
Q Consensus 79 ~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~i 158 (504)
+|+++|.||||+|+++|++||||+++||++..|.....|..+..|++++|+|++..++.+.+.|++|++.|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973336788899999999999999999999999999999999999999
Q ss_pred CCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCC-CCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEEEC
Q 010677 159 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGN-ATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 237 (504)
Q Consensus 159 g~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 237 (504)
++..+.++.||++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876555567788999999988766554 788999999999999999999999874 447999999
Q ss_pred ccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccccccccccch
Q 010677 238 GFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKT 317 (504)
Q Consensus 238 gid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~ 317 (504)
|+|+++|.|+++|+|+...++|.+.+++|.+++... ....+..++||||++++++|.+++++|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999932 24556789999999999999999999999997661
Q ss_pred hhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhh
Q 010677 318 VVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKT 397 (504)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (504)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeE
Q 010677 398 KEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLW 477 (504)
Q Consensus 398 ~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 477 (504)
..+.|.+||+....+|.|+|.|++.+++|+|++|+.+..+.....|++.|...+. ....+.|
T Consensus 230 -----------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 230 -----------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp -----------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred -----------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 0156899999888899999999999999999999998876655689999998654 3455789
Q ss_pred EeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 478 VLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 478 ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
|||.+|||++|++||.+++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.9e-53 Score=417.97 Aligned_cols=219 Identities=28% Similarity=0.449 Sum_probs=192.5
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceee-cCceEEEEeccee-EEEEEEEEEEE
Q 010677 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTK-IGVPCKIHYGSGQ-ISGFFSQDNVK 157 (504)
Q Consensus 80 Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~i~Yg~g~-~~G~~~~D~v~ 157 (504)
|+++|+||||||++.|++||||+++||++..|. ...|..+..|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999997 33455677899999999987 5789999999997 89999999999
Q ss_pred ECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCC---CCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEE
Q 010677 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAG---NATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEI 234 (504)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L 234 (504)
||+.+++++.||++.......+....++||||||++..+.. ...+++++|++++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455567899999999876542 35678999999875 79999999863 27999
Q ss_pred EECccCCCCcccceeEEecCC-ccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhc
Q 010677 235 IFGGFDWRHFRGSHIYVPITE-KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIG 306 (504)
Q Consensus 235 ~fGgid~~~~~g~l~~~pv~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~ 306 (504)
+|||+|++++.|+++|+|+.. .++|.|.+++|.|++.... ...+..++|||||+++++|.+++++|.+++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999987 7899999999999988432 3467889999999999999999999998884
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-51 Score=424.28 Aligned_cols=316 Identities=28% Similarity=0.471 Sum_probs=247.0
Q ss_pred ceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEEEEE
Q 010677 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVK 157 (504)
Q Consensus 78 ~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ 157 (504)
..|+++|.||||+|+|.|+|||||+++||++..|. ..++.|+|++|+||+..++.+++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 47999999999999999999999999999998773 3467899999999999999999999999999999999999
Q ss_pred ECCeeccccE----EEEEEeeCCccccccccceeeecccCcCcC--CCCCcHHHHHHHcCCCCccEEEEEecCCC-----
Q 010677 158 IGDMIIKDQE----FVEVTKEGLLPFLALQFDGILGLGFRDIAA--GNATPLWYNMVRQGHISQKIFSLWLNQDP----- 226 (504)
Q Consensus 158 ig~~~~~~~~----fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~FSl~l~~~~----- 226 (504)
|++. .++. |+++....+.......+|||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344433332211233679999999987764 2467899999999987 579999986421
Q ss_pred --CCCCccEEEECccCCCCcccceeEEecCCccceEEEEeeEEEcCeEeeeecC---CceEEEccCccCcccCHHHHHHH
Q 010677 227 --NSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCED---GCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 227 --~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aivDSGTs~i~lP~~~~~~l 301 (504)
.....|.|+|||+|++++.|++.|+|+....+|.|.+++|.|++..+..... ...+||||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999987753221 24699999999999999999999
Q ss_pred HHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhh
Q 010677 302 NHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFC 381 (504)
Q Consensus 302 ~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (504)
.++++++.. ..
T Consensus 234 ~~~l~~~~~--------------------~~------------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASL--------------------IE------------------------------------------------- 244 (364)
T ss_pred HHHHHhhcc--------------------cc-------------------------------------------------
Confidence 999976510 00
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCC-CCceEEcCCCCC-----CCceEEEEECC------EEEEeCcccce
Q 010677 382 EMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNP-MGKSFINCDDIA-----SMPYVSFTIGN------RSFPLSPEQYI 449 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~l~f~~~g------~~~~l~p~~yi 449 (504)
..+.. .+.+.++|.... .+|+|+|+|+| .++.|+|++|+
T Consensus 245 -----------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~ 295 (364)
T cd05473 245 -----------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYL 295 (364)
T ss_pred -----------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhh
Confidence 00000 122356786433 58999999964 47899999999
Q ss_pred Eeecc-CcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEecC
Q 010677 450 FKIEE-GHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 504 (504)
Q Consensus 450 ~~~~~-~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~~ 504 (504)
..... .....|+. +... ...+.||||+.|||++|+|||.+++|||||+++
T Consensus 296 ~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 296 RPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 86432 22457985 2111 123479999999999999999999999999874
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-51 Score=423.42 Aligned_cols=321 Identities=39% Similarity=0.745 Sum_probs=265.9
Q ss_pred ceeEeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccC-CCC-CCCCCCCceeecCce-------
Q 010677 67 ADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYL-HSR-YRARLSRTYTKIGVP------- 137 (504)
Q Consensus 67 ~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~-~~~-y~~~~SsT~~~~~~~------- 137 (504)
....++..+.++.|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 34 ~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 34 PLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred ccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccc
Confidence 34456667778899999999999999999999999999999999962 6874 455 999999999998743
Q ss_pred -----------EEEEeccee-EEEEEEEEEEEECC---eeccccEEEEEEeeCCccccc-cccceeeecccCcCcCCCCC
Q 010677 138 -----------CKIHYGSGQ-ISGFFSQDNVKIGD---MIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGFRDIAAGNAT 201 (504)
Q Consensus 138 -----------~~i~Yg~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~ 201 (504)
|.+.|++|+ +.|.+++|+|++++ ..++++.|||+....+. +.. .+++||||||+..++.....
T Consensus 112 ~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeec
Confidence 999999954 89999999999998 78888999999988765 444 67899999999988855544
Q ss_pred cHHHHHHHcCCCCccEEEEEecCCCCC-CCccEEEECccCCCCcccceeEEecCCcc--ceEEEEeeEEEcCeE----ee
Q 010677 202 PLWYNMVRQGHISQKIFSLWLNQDPNS-EVGGEIIFGGFDWRHFRGSHIYVPITEKG--YWQIKVGDILIENSS----TG 274 (504)
Q Consensus 202 ~~~~~L~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGgid~~~~~g~l~~~pv~~~~--~w~v~l~~i~v~~~~----~~ 274 (504)
+.+.++ .++||+||.+.... ..+|.|+||++|+.++.+++.|+|+.... +|.+.+++|.|+++. ..
T Consensus 191 ~~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~ 263 (398)
T KOG1339|consen 191 PSFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSL 263 (398)
T ss_pred ccccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcce
Confidence 433222 23899999987433 25899999999999999999999998877 999999999999832 22
Q ss_pred eecCCceEEEccCccCcccCHHHHHHHHHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCccc
Q 010677 275 FCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYM 354 (504)
Q Consensus 275 ~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 354 (504)
++.+...+|+||||++++||.++|++|.+++++.- +
T Consensus 264 ~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~--------------~------------------------------ 299 (398)
T KOG1339|consen 264 FCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV--------------S------------------------------ 299 (398)
T ss_pred EecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe--------------e------------------------------
Confidence 34446889999999999999999999999997650 0
Q ss_pred ccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCC----Cc
Q 010677 355 STGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS----MP 430 (504)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P 430 (504)
+ +...+.+.++|..... +|
T Consensus 300 -----------------------------------------------------~----~~~~~~~~~~C~~~~~~~~~~P 322 (398)
T KOG1339|consen 300 -----------------------------------------------------V----VGTDGEYFVPCFSISTSGVKLP 322 (398)
T ss_pred -----------------------------------------------------c----cccCCceeeecccCCCCcccCC
Confidence 0 1234567888887776 99
Q ss_pred eEEEEEC-CEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCC-CCeEEEEec
Q 010677 431 YVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFG-NLQIGFAEA 503 (504)
Q Consensus 431 ~l~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~-~~~iGfa~~ 503 (504)
.|+|+|+ |+.|.+++++|++........ |.+.+...+.+ +.||||+.|+|+++++||.. ++|||||++
T Consensus 323 ~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 323 DITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 9999998 899999999999987654322 99988754421 68999999999999999999 999999985
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.6e-50 Score=408.73 Aligned_cols=282 Identities=30% Similarity=0.483 Sum_probs=235.0
Q ss_pred ceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccc--CCCCCCCCCCCceeec----------------CceEE
Q 010677 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKI----------------GVPCK 139 (504)
Q Consensus 78 ~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~----------------~~~~~ 139 (504)
+.|+++|+||||||++.|++||||+++||+|..|. .|. .++.|+|++|+|++.. ++.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 565 3578999999999863 56899
Q ss_pred EEeccee-EEEEEEEEEEEECCeecc-------ccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcC
Q 010677 140 IHYGSGQ-ISGFFSQDNVKIGDMIIK-------DQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 211 (504)
Q Consensus 140 i~Yg~g~-~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 211 (504)
+.|++|+ +.|.+++|+|+|++..+. ++.||++....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999987653 467999877654 34456679999999986542 223445577777
Q ss_pred CCCc--cEEEEEecCCCCCCCccEEEECccCCCCcc----------cceeEEecCCccceEEEEeeEEEcCeE-eeeecC
Q 010677 212 HISQ--KIFSLWLNQDPNSEVGGEIIFGGFDWRHFR----------GSHIYVPITEKGYWQIKVGDILIENSS-TGFCED 278 (504)
Q Consensus 212 ~i~~--~~FSl~l~~~~~~~~~G~L~fGgid~~~~~----------g~l~~~pv~~~~~w~v~l~~i~v~~~~-~~~~~~ 278 (504)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+..+.+|.|.+++|++++.. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7664 9999999864 699999999999987 899999999889999999999999886 112346
Q ss_pred CceEEEccCccCcccCHHHHHHHHHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccce
Q 010677 279 GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGI 358 (504)
Q Consensus 279 ~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 358 (504)
...++|||||++++||++++++|.+
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~------------------------------------------------------- 255 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINN------------------------------------------------------- 255 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHh-------------------------------------------------------
Confidence 7789999999999999999987642
Q ss_pred eeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEEC-
Q 010677 359 ETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG- 437 (504)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~- 437 (504)
.+|+|+|.|+
T Consensus 256 ---------------------------------------------------------------------~~P~i~~~f~~ 266 (326)
T cd06096 256 ---------------------------------------------------------------------FFPTITIIFEN 266 (326)
T ss_pred ---------------------------------------------------------------------hcCcEEEEEcC
Confidence 1289999997
Q ss_pred CEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 438 NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 438 g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
|++++++|++|++..... .|..++.. ..+.||||++|||++|+|||++++|||||++
T Consensus 267 g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 267 NLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred CcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 899999999999975432 36665542 2257999999999999999999999999986
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=9.1e-50 Score=399.30 Aligned_cols=278 Identities=30% Similarity=0.540 Sum_probs=240.2
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecce-eEEEEEEEEEEE
Q 010677 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSG-QISGFFSQDNVK 157 (504)
Q Consensus 79 ~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-~~~G~~~~D~v~ 157 (504)
.|+++|.||||+|++.|++||||+++||+ .+.+.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999997 678899995 589999999999
Q ss_pred ECCeeccccEEEEEEeeCCccccccccceeeecccCcCcC-----CCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCcc
Q 010677 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA-----GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 232 (504)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 232 (504)
+++..++++.||++.... ..+||||||++..+. ...++++++|++||.|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999987643 24557999999999999999999998753 2379
Q ss_pred EEEECccCCCCcccceeEEecCCc------cceEEEEeeEEEcCeEee--eecCCceEEEccCccCcccCHHHHHHHHHH
Q 010677 233 EIIFGGFDWRHFRGSHIYVPITEK------GYWQIKVGDILIENSSTG--FCEDGCTAILDSGTSVLAGPTTVVAQINHA 304 (504)
Q Consensus 233 ~L~fGgid~~~~~g~l~~~pv~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aivDSGTs~i~lP~~~~~~l~~~ 304 (504)
.|+|||+|++++.|++.|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 689999999999998753 234567899999999999999999999999
Q ss_pred hccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHH
Q 010677 305 IGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMI 384 (504)
Q Consensus 305 l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (504)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 87651
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeecc--CcceeEEE
Q 010677 385 VFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEE--GHSTICIS 462 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g~~~~l~p~~yi~~~~~--~~~~~C~~ 462 (504)
....+.|.++|+.... |+|+|+|+|.+++||+++|+++... .....|++
T Consensus 209 ----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 209 ----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred ----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 0113568899998766 9999999999999999999997642 34578998
Q ss_pred eeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 463 GFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 463 ~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
.|+..+ .+.||||++|||++|++||.+++|||||+|
T Consensus 260 ~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 260 GIQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 888643 158999999999999999999999999986
No 18
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=416.52 Aligned_cols=304 Identities=21% Similarity=0.394 Sum_probs=235.7
Q ss_pred CCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCcccc--CCCCCCCCCCCceeecC------------------
Q 010677 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKIG------------------ 135 (504)
Q Consensus 76 ~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 135 (504)
.+.+|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4679999999999999999999999999999999997 676 45689999999998743
Q ss_pred --ceEEEEeccee-EEEEEEEEEEEECC-----eeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHH
Q 010677 136 --VPCKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNM 207 (504)
Q Consensus 136 --~~~~i~Yg~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L 207 (504)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 46889999999876542 32 257999999997654 45555
Q ss_pred HHcCCCCccEEEEEecCCCC-CCCccEEEECccCCCCccc-ceeEEecCC---ccceEEEEeeEEEcCeEeeeec-----
Q 010677 208 VRQGHISQKIFSLWLNQDPN-SEVGGEIIFGGFDWRHFRG-SHIYVPITE---KGYWQIKVGDILIENSSTGFCE----- 277 (504)
Q Consensus 208 ~~qg~i~~~~FSl~l~~~~~-~~~~G~L~fGgid~~~~~g-~l~~~pv~~---~~~w~v~l~~i~v~~~~~~~~~----- 277 (504)
..+ +. ++||+||.+..+ ....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|+||++.+....
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 432 44 599999975322 234799999984 45544 489999974 4689999999999998765422
Q ss_pred -CCceEEEccCccCcccCHHHHHHHHHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCccccc
Q 010677 278 -DGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMST 356 (504)
Q Consensus 278 -~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 356 (504)
+...+||||||++++||+++|++|.+++... +....
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~~--------------------- 341 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------------------IGGER--------------------- 341 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------------------hcccc---------------------
Confidence 1247999999999999999999998887543 00000
Q ss_pred ceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCC---CCCceEE
Q 010677 357 GIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDI---ASMPYVS 433 (504)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~---~~~P~l~ 433 (504)
... ...+..+|... ..+|+|+
T Consensus 342 -------------------------------------------------------~~~-~~~~~~~C~~~~~~~~~P~i~ 365 (431)
T PLN03146 342 -------------------------------------------------------VSD-PQGLLSLCYSSTSDIKLPIIT 365 (431)
T ss_pred -------------------------------------------------------CCC-CCCCCCccccCCCCCCCCeEE
Confidence 000 00011234321 3689999
Q ss_pred EEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 434 FTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 434 f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
|+|+|.++.|+|++|++...++ ..|+. +.. ..+.||||+.|||++|++||++++|||||++
T Consensus 366 ~~F~Ga~~~l~~~~~~~~~~~~--~~Cl~-~~~------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 366 AHFTGADVKLQPLNTFVKVSED--LVCFA-MIP------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EEECCCeeecCcceeEEEcCCC--cEEEE-Eec------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999999999999976543 57985 332 1236999999999999999999999999986
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=8.1e-49 Score=393.30 Aligned_cols=287 Identities=23% Similarity=0.416 Sum_probs=222.6
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEEEEE
Q 010677 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 157 (504)
Q Consensus 79 ~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~-~~G~~~~D~v~ 157 (504)
+|+++|.||||||++.|++||||+++||+|.+| +.|.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 67899999998 58999999999
Q ss_pred ECCe-eccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEEE
Q 010677 158 IGDM-IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 236 (504)
Q Consensus 158 ig~~-~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 236 (504)
|++. .++++.||++....+. + ...+||||||++..+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987654 34455443 3589999998743 134799999
Q ss_pred CccCCCCcccceeEEecCCc----cceEEEEeeEEEcCeEeeee---cCCceEEEccCccCcccCHHHHHHHHHHhcccc
Q 010677 237 GGFDWRHFRGSHIYVPITEK----GYWQIKVGDILIENSSTGFC---EDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 309 (504)
Q Consensus 237 Ggid~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~~~~~~~~---~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~ 309 (504)
||+|++ .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|+++|++|.+++.+..
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999753 68999999999999887532 235679999999999999999999999886540
Q ss_pred ccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHH
Q 010677 310 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 389 (504)
Q Consensus 310 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (504)
. .+. . .+ +.
T Consensus 202 ~----------~~~---------~-~~-------~~-------------------------------------------- 210 (299)
T cd05472 202 A----------AYP---------R-AP-------GF-------------------------------------------- 210 (299)
T ss_pred c----------cCC---------C-CC-------CC--------------------------------------------
Confidence 0 000 0 00 00
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEEC-CEEEEeCcccceEeeccCcceeEEEeeEecc
Q 010677 390 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALD 468 (504)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~ 468 (504)
+.-+.|+. ++|.....+|+|+|+|+ +.++.|+|++|++... .....|+. +...+
T Consensus 211 --------------~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~ 265 (299)
T cd05472 211 --------------SILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS 265 (299)
T ss_pred --------------CCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC
Confidence 00001221 22333457999999997 8999999999998432 23467974 54322
Q ss_pred CCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 469 VPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 469 ~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 ---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 ---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred ---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 13457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1e-46 Score=374.04 Aligned_cols=227 Identities=43% Similarity=0.758 Sum_probs=199.8
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCC--CCCCCCCceeecCceEEEEecceeEEEEEEEEEEE
Q 010677 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSR--YRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVK 157 (504)
Q Consensus 80 Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~--y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ 157 (504)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 233333333 89999999999999999999999999999999999
Q ss_pred ECCeeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEEEC
Q 010677 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 237 (504)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 237 (504)
+++..++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 344567899999999887666678899999999999999999999985322348999999
Q ss_pred ccCCCCcccceeEEecCC--ccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhccc
Q 010677 238 GFDWRHFRGSHIYVPITE--KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 308 (504)
Q Consensus 238 gid~~~~~g~l~~~pv~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~~ 308 (504)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|.+++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999988 78999999999999974222456788999999999999999999999999766
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.5e-46 Score=368.78 Aligned_cols=248 Identities=25% Similarity=0.457 Sum_probs=210.0
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEEEEE
Q 010677 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 157 (504)
Q Consensus 79 ~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~-~~G~~~~D~v~ 157 (504)
+|+++|+||||||++.|++||||+++||+| |.+.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 46788999775 89999999999
Q ss_pred ECCe--eccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCCccEEE
Q 010677 158 IGDM--IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEII 235 (504)
Q Consensus 158 ig~~--~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 235 (504)
|++. .++++.||++....+ +.....+||||||++..+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999988764 456678999999986543 567777776 79999998753234589999
Q ss_pred ECccCCCCcccceeEEecCC----ccceEEEEeeEEEcCeEeee--------ecCCceEEEccCccCcccCHHHHHHHHH
Q 010677 236 FGGFDWRHFRGSHIYVPITE----KGYWQIKVGDILIENSSTGF--------CEDGCTAILDSGTSVLAGPTTVVAQINH 303 (504)
Q Consensus 236 fGgid~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aivDSGTs~i~lP~~~~~~l~~ 303 (504)
|||+|++ +.|++.|+|+.. ..+|.+++++|+|+++.+.+ ......+++||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------ 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------ 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc------
Confidence 9999999 999999999976 57999999999999987642 3456789999999999999631
Q ss_pred HhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhH
Q 010677 304 AIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEM 383 (504)
Q Consensus 304 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (504)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEEC-CEEEEeCcccceEeeccCcceeEEE
Q 010677 384 IVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICIS 462 (504)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~ 462 (504)
+|+|+|+|+ +.++.+++++|+.... ....|+.
T Consensus 195 ---------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~ 227 (265)
T cd05476 195 ---------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA 227 (265)
T ss_pred ---------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE
Confidence 189999998 8999999999999543 3468975
Q ss_pred eeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEecC
Q 010677 463 GFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 504 (504)
Q Consensus 463 ~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~~ 504 (504)
+... +..+.||||++|||++|++||.+++|||||++.
T Consensus 228 -~~~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 228 -ILSS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred -EecC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 4322 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1e-45 Score=365.85 Aligned_cols=258 Identities=23% Similarity=0.397 Sum_probs=212.9
Q ss_pred ceEEEEEEecCCCceEEEEEcCCCCCeeEeCC-CCCCCccccCCCCCCCCCCCceeecCceEEEEecce-eEEEEEEEEE
Q 010677 78 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS-KCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSG-QISGFFSQDN 155 (504)
Q Consensus 78 ~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~-~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-~~~G~~~~D~ 155 (504)
++|+++|.||||||++.|++||||+++||+|. .|. .| +|.|.++|++| ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 47999999999999999999999999999984 575 45 46799999965 5899999999
Q ss_pred EEECC----eeccccEEEEEEeeCCcc-ccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010677 156 VKIGD----MIIKDQEFVEVTKEGLLP-FLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 230 (504)
Q Consensus 156 v~ig~----~~~~~~~fg~~~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 230 (504)
|++++ ..++++.|||+....+.. +.....|||||||+... +++.+|.+++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKI------SLPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCC------CHHHHHHhcCCc-CceEEEEccCC----C
Confidence 99953 577899999997655422 23456799999998654 478999999999 89999999863 2
Q ss_pred ccEEEECccCCCCcccceeEEecCCc---cceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcc
Q 010677 231 GGEIIFGGFDWRHFRGSHIYVPITEK---GYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA 307 (504)
Q Consensus 231 ~G~L~fGgid~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l~~~l~~ 307 (504)
+|.|+|| |..++.|++.|+|+.++ .+|.|++.+|+|+++.. ...+..++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 6899998 55667899999999864 79999999999999854 34567899999999999996421
Q ss_pred ccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHH
Q 010677 308 EGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFW 387 (504)
Q Consensus 308 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (504)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECC----EEEEeCcccceEeeccCcceeEEEe
Q 010677 388 IQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGN----RSFPLSPEQYIFKIEEGHSTICISG 463 (504)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g----~~~~l~p~~yi~~~~~~~~~~C~~~ 463 (504)
+|+|+|+|++ ++++|+|++|++.... ...|+..
T Consensus 197 -----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~ 233 (273)
T cd05475 197 -----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGI 233 (273)
T ss_pred -----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEE
Confidence 5889999976 7999999999987543 3579886
Q ss_pred eEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEecC
Q 010677 464 FIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 504 (504)
Q Consensus 464 ~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~~ 504 (504)
+...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 234 ~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 234 LNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 654321 234589999999999999999999999999864
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.3e-42 Score=351.82 Aligned_cols=313 Identities=18% Similarity=0.259 Sum_probs=228.8
Q ss_pred ecCCCce-EEEEEcCCCCCeeEeCCC----------CCCCccccCCCCCCCCC------CCceeecCceEEEE-eccee-
Q 010677 86 IGSPPQS-FSVVFDTGSSNLWVPSSK----------CLFSISCYLHSRYRARL------SRTYTKIGVPCKIH-YGSGQ- 146 (504)
Q Consensus 86 iGtP~Q~-~~v~vDTGSs~~WV~~~~----------C~~~~~C~~~~~y~~~~------SsT~~~~~~~~~i~-Yg~g~- 146 (504)
+|+|-.+ +.|++||||+++||+|.+ |. +..|..+..|++.+ ++......|.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999996654 54 55677666676542 22233334666544 77885
Q ss_pred EEEEEEEEEEEECC--------eeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcCCCCccEE
Q 010677 147 ISGFFSQDNVKIGD--------MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIF 218 (504)
Q Consensus 147 ~~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~F 218 (504)
..|.+++|+|+|+. ..++++.|||+.......+ ...+|||||||++.++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 68999999999973 3688999999977532112 2347999999998876 3456666554 46899
Q ss_pred EEEecCCCCCCCccEEEECccCCCCcc------cceeEEecCCc----cceEEEEeeEEEcCeEeeee--------cCCc
Q 010677 219 SLWLNQDPNSEVGGEIIFGGFDWRHFR------GSHIYVPITEK----GYWQIKVGDILIENSSTGFC--------EDGC 280 (504)
Q Consensus 219 Sl~l~~~~~~~~~G~L~fGgid~~~~~------g~l~~~pv~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~ 280 (504)
|+||.+.. ...|.|+||+.++.++. +.+.|+|+... .+|.|+|++|+||++.+.+. .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999754 79999999999999877532 2345
Q ss_pred eEEEccCccCcccCHHHHHHHHHHhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceee
Q 010677 281 TAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIET 360 (504)
Q Consensus 281 ~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 360 (504)
.+||||||++++||.++|++|.+++.+.- ..+.. ..+..
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~~~---------~~~~~---------------------- 269 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARIPR---------VPAAA---------------------- 269 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHh----------cccCc---------CCCCC----------------------
Confidence 79999999999999999999999986540 00000 00000
Q ss_pred eeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECC--
Q 010677 361 VVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGN-- 438 (504)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~~~g-- 438 (504)
-+.+.|+.... ...|+....+|+|+|+|+|
T Consensus 270 -------------------------------------------~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g 301 (362)
T cd05489 270 -------------------------------------------VFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGG 301 (362)
T ss_pred -------------------------------------------CCcCccccCCC-----cCCcccccccceEEEEEeCCC
Confidence 00024554321 1233334689999999965
Q ss_pred EEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEEEec
Q 010677 439 RSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 503 (504)
Q Consensus 439 ~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGfa~~ 503 (504)
+++.|+|++|+++..+ ...|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 302 ~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 302 VNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998654 35796 57654421 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.4e-22 Score=172.16 Aligned_cols=108 Identities=52% Similarity=0.840 Sum_probs=95.8
Q ss_pred EEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCC-CCCCCCceeecCceEEEEecceeEEEEEEEEEEEECC
Q 010677 82 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRY-RARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGD 160 (504)
Q Consensus 82 ~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y-~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig~ 160 (504)
++|.||||||++.|++||||+++||++..|. ...|..+..| +|+.|++++..++.+.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999997 3344455566 9999999999999999999999999999999999999
Q ss_pred eeccccEEEEEEeeCCccccccccceeeec
Q 010677 161 MIIKDQEFVEVTKEGLLPFLALQFDGILGL 190 (504)
Q Consensus 161 ~~~~~~~fg~~~~~~~~~~~~~~~dGIlGL 190 (504)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654455678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.85 E-value=1.2e-20 Score=172.05 Aligned_cols=136 Identities=35% Similarity=0.551 Sum_probs=105.2
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecC----------------------ce
Q 010677 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIG----------------------VP 137 (504)
Q Consensus 80 Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~----------------------~~ 137 (504)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+... |.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 25678888888887632 58
Q ss_pred EEEEeccee-EEEEEEEEEEEECC-----eeccccEEEEEEeeCCccccccccceeeecccCcCcCCCCCcHHHHHHHcC
Q 010677 138 CKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 211 (504)
Q Consensus 138 ~~i~Yg~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg 211 (504)
|.+.|++++ ..|.+++|+++++. ..+.++.|||+....+.. ...+||||||+...+ ++.+|.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh-
Confidence 999999887 69999999999976 467889999999877532 277999999987765 77888887
Q ss_pred CCCccEEEEEecCCCCCCCccEEEECc
Q 010677 212 HISQKIFSLWLNQDPNSEVGGEIIFGG 238 (504)
Q Consensus 212 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 238 (504)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.75 E-value=1.9e-17 Score=150.79 Aligned_cols=153 Identities=25% Similarity=0.379 Sum_probs=103.5
Q ss_pred ceEEEEeeEEEcCeEeeeecC-------CceEEEccCccCcccCHHHHHHHHHHhccccccccccchhhhhcchhhHhhh
Q 010677 258 YWQIKVGDILIENSSTGFCED-------GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFL 330 (504)
Q Consensus 258 ~w~v~l~~i~v~~~~~~~~~~-------~~~aivDSGTs~i~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~~~~~~~~~~ 330 (504)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+++.+++.+.- ....
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~----------~~~~------- 63 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM----------GAPG------- 63 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH----------HTCT-------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh----------hhcc-------
Confidence 488999999999999876543 4689999999999999999999999986540 0000
Q ss_pred hcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhc
Q 010677 331 ISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCE 410 (504)
Q Consensus 331 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 410 (504)
.+.. . -..--.++|+
T Consensus 64 ~~~~--~---------------------------------------------------------------~~~~~~~~Cy 78 (161)
T PF14541_consen 64 VSRE--A---------------------------------------------------------------PPFSGFDLCY 78 (161)
T ss_dssp --CE--E------------------------------------------------------------------TT-S-EE
T ss_pred cccc--c---------------------------------------------------------------ccCCCCCcee
Confidence 0000 0 0000124566
Q ss_pred cCCCCCCceEEcCCCCCCCceEEEEEC-CEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEE
Q 010677 411 VLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHT 489 (504)
Q Consensus 411 ~~~~~~~~~~~~C~~~~~~P~l~f~~~-g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~ 489 (504)
..+... .+ .....+|+|+|+|. |.+++|+|++|++...++ ..|+.... .+ ....+..|||..+|+++++
T Consensus 79 ~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~-~~--~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 79 NLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVP-SD--ADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp EGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEE-ET--STTSSSEEE-HHHCCTEEE
T ss_pred eccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEc-cC--CCCCCcEEECHHHhcCcEE
Confidence 665411 01 12258999999996 899999999999987643 78997444 31 2344688999999999999
Q ss_pred EEeCCCCeEEEEe
Q 010677 490 VFDFGNLQIGFAE 502 (504)
Q Consensus 490 vfD~~~~~iGfa~ 502 (504)
+||++++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.14 E-value=6.6e-06 Score=67.31 Aligned_cols=92 Identities=21% Similarity=0.399 Sum_probs=66.1
Q ss_pred eEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeE-EEEEEEEEEE
Q 010677 79 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQI-SGFFSQDNVK 157 (504)
Q Consensus 79 ~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~-~G~~~~D~v~ 157 (504)
.|++++.|+. +++++++|||++.+|+...... .+.. . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcCC--C---------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 6899999995 9999999999999999764322 1111 0 1122345667777773 4555689999
Q ss_pred ECCeeccccEEEEEEeeCCccccccccceeeeccc
Q 010677 158 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (504)
Q Consensus 158 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 192 (504)
+|+..++++.+..+..... ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999998877754321 4699999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.53 E-value=0.00049 Score=59.29 Aligned_cols=101 Identities=19% Similarity=0.353 Sum_probs=68.2
Q ss_pred EeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeE-E
Q 010677 70 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQI-S 148 (504)
Q Consensus 70 ~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~-~ 148 (504)
+++....++.|++++.|.. +++.+++|||++.+.++...-. .. ..++.. ......+.-+.|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~---~L----gl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ---RL----GLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---Hc----CCCccc------CCceEEEEeCCCcEEE
Confidence 4566667899999999987 7999999999999988643211 00 011111 12234444455664 3
Q ss_pred EEEEEEEEEECCeeccccEEEEEEeeCCccccccccceeeeccc
Q 010677 149 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (504)
Q Consensus 149 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 192 (504)
..+.-|.+++|+..+.|....++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999977664321 1279999974
No 29
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.16 E-value=0.00062 Score=45.97 Aligned_cols=37 Identities=41% Similarity=0.648 Sum_probs=35.1
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCC
Q 010677 377 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 413 (504)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 413 (504)
.|..|++++.++++.+..+.|+++|.+++++.|..+|
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 6999999999999999999999999999999998765
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.78 E-value=0.0076 Score=48.30 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=53.8
Q ss_pred EEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEEEEEECC
Q 010677 82 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVKIGD 160 (504)
Q Consensus 82 ~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~-~~G~~~~D~v~ig~ 160 (504)
+++.|+. +++++++|||++.+.+....+. .. ...+.. ......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~---~l----~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK---KL----GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH---Hc----CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 3577776 8999999999998887654332 00 011111 1111233333444 33455666899999
Q ss_pred eeccccEEEEEEeeCCccccccccceeeecc
Q 010677 161 MIIKDQEFVEVTKEGLLPFLALQFDGILGLG 191 (504)
Q Consensus 161 ~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg 191 (504)
..+.+..|-+.. .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 998888876665 123458999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.13 E-value=0.061 Score=54.19 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=104.5
Q ss_pred eEEEEEEecCCC----ceEE-EEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCce--EEEEecceeEEEEE
Q 010677 79 QYYGEIGIGSPP----QSFS-VVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVP--CKIHYGSGQISGFF 151 (504)
Q Consensus 79 ~Y~~~i~iGtP~----Q~~~-v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~--~~i~Yg~g~~~G~~ 151 (504)
.-++.|+|=-|. |++. |++||||.-+=|..+.-.. ..........+ .+.. --..|++|..-|-+
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsV 93 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTG-----GGAPLAECAQFASGYTWGSV 93 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccC-----CCcchhhhhhccCcccccce
Confidence 345556654442 5664 9999999987765542210 00001111111 1111 23567888888999
Q ss_pred EEEEEEECCeeccccEEEEEEeeC-----------C---ccccccccceeeecccCcCcC----------------CCC-
Q 010677 152 SQDNVKIGDMIIKDQEFVEVTKEG-----------L---LPFLALQFDGILGLGFRDIAA----------------GNA- 200 (504)
Q Consensus 152 ~~D~v~ig~~~~~~~~fg~~~~~~-----------~---~~~~~~~~dGIlGLg~~~~s~----------------~~~- 200 (504)
.+..|+|++....+.++.++.+.. + ........+||||+|.-.... ...
T Consensus 94 r~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~ 173 (370)
T PF11925_consen 94 RTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGG 173 (370)
T ss_pred EEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCC
Confidence 999999999776666666664321 0 011245679999998643221 001
Q ss_pred --CcHHHHHHHcCCCCccEEEEEecCCC------------CCCCccEEEECc-cCCC-CcccceeEEecCCccceEEEEe
Q 010677 201 --TPLWYNMVRQGHISQKIFSLWLNQDP------------NSEVGGEIIFGG-FDWR-HFRGSHIYVPITEKGYWQIKVG 264 (504)
Q Consensus 201 --~~~~~~L~~qg~i~~~~FSl~l~~~~------------~~~~~G~L~fGg-id~~-~~~g~l~~~pv~~~~~w~v~l~ 264 (504)
++.-..+-+| +..|+..|-.+.+. .....|.|+||= -... ...+.....+..+.++..-
T Consensus 174 sCt~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt--- 248 (370)
T PF11925_consen 174 SCTSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT--- 248 (370)
T ss_pred Ceecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE---
Confidence 1111112233 55566655433221 223579999982 2111 1223345556666555332
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHH
Q 010677 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTT 296 (504)
Q Consensus 265 ~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~ 296 (504)
.++|.... ...||||+.-.++|..
T Consensus 249 --~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 --TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred --EecCceee------eeeEecCCceeeccCC
Confidence 23444332 2499999999998854
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.84 E-value=0.049 Score=47.01 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=58.8
Q ss_pred CCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEE-EEeccee--EEEEEE
Q 010677 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK-IHYGSGQ--ISGFFS 152 (504)
Q Consensus 76 ~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-i~Yg~g~--~~G~~~ 152 (504)
....+++++.|+. +++++++|||++..++....+. .++-.. .. ...+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~~----~~-------~~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLMR----LI-------DKRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCcc----cc-------CcceEEEEecCCCcEEEeEEE
Confidence 4568999999997 8899999999999988654332 122110 00 11111 1223232 467777
Q ss_pred EEEEEECCeeccccEEEEEEeeCCccccccccceeeeccc
Q 010677 153 QDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (504)
Q Consensus 153 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 192 (504)
.+.+.+++...+ ..|.+... ...|+|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 889999998765 56655422 24599999874
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.22 E-value=0.079 Score=49.01 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=68.8
Q ss_pred CCceeEeceecCCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecc
Q 010677 65 PKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGS 144 (504)
Q Consensus 65 ~~~~~~~l~~~~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~ 144 (504)
.+...+.|....++.|.++..|-. |+++.++|||-+.+.+....-. .--++.. ..+.++.+.-.+
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~------~l~y~~~v~TAN 155 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLN------SLDYTITVSTAN 155 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCcc------ccCCceEEEccC
Confidence 345578888889999999999987 9999999999999988755421 1123332 234566777788
Q ss_pred eeEE-EEEEEEEEEECCeeccccEEEEE
Q 010677 145 GQIS-GFFSQDNVKIGDMIIKDQEFVEV 171 (504)
Q Consensus 145 g~~~-G~~~~D~v~ig~~~~~~~~fg~~ 171 (504)
|... -.+-.|+|.||++.+.|+.=-++
T Consensus 156 G~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 156 GRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred CccccceEEeeeEEEccEEEcCchhhee
Confidence 8865 45788999999999988764443
No 34
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=94.57 E-value=0.0083 Score=39.39 Aligned_cols=34 Identities=38% Similarity=0.863 Sum_probs=32.0
Q ss_pred cccchhhhhcchhhHhhhhcCCCCCcccccCcce
Q 010677 313 MQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346 (504)
Q Consensus 313 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 346 (504)
..|+.++++|+..|++.+.+.++|+.+|..+|+|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 3599999999999999999999999999999988
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.51 E-value=0.16 Score=41.01 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=47.3
Q ss_pred EEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee---EEEEEEEEEE
Q 010677 80 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ---ISGFFSQDNV 156 (504)
Q Consensus 80 Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~---~~G~~~~D~v 156 (504)
|++.+.|+. +++++++||||+..++....+. .....+ .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~-------~lg~~~-------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR-------KLGSPP-------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH-------HhCCCc-------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578899998 9999999999999999765442 000000 11123333334443 36776 8899
Q ss_pred EECCeeccccEEEEEE
Q 010677 157 KIGDMIIKDQEFVEVT 172 (504)
Q Consensus 157 ~ig~~~~~~~~fg~~~ 172 (504)
++++.+. ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998773 35554443
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.05 E-value=0.66 Score=39.95 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.3
Q ss_pred eEEeCHhhhccEEEEEeCCCCeEEE
Q 010677 476 LWVLGDMFLRAYHTVFDFGNLQIGF 500 (504)
Q Consensus 476 ~~ILG~~fl~~~y~vfD~~~~~iGf 500 (504)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4699999999999999999998753
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.45 E-value=0.63 Score=37.21 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=47.1
Q ss_pred EEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEE-EEE-EEEECC
Q 010677 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFF-SQD-NVKIGD 160 (504)
Q Consensus 83 ~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~-~~D-~v~ig~ 160 (504)
.+.|.. +++++++|||++.+-+....+. .. . ...+...+.=.+|...-.+ ..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~~-----~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---KQ-----E---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---hc-----c---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 455655 8999999999999999766543 00 0 1112333333333321111 123 699999
Q ss_pred eeccccEEEEEEeeCCccccccccceeeeccc
Q 010677 161 MIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 192 (504)
Q Consensus 161 ~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 192 (504)
....++ |...... .++|||+.+
T Consensus 63 ~~~~~~-~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSHS-FLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEEE-EEEEcCC---------CCcEechhh
Confidence 988854 4443221 278999864
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=91.52 E-value=0.61 Score=40.90 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.6
Q ss_pred eEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 476 LWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 476 ~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
..|||.++|+.+..+-|..+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 469999999999999999999998864
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.24 E-value=3.3 Score=35.48 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=27.0
Q ss_pred ccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 256 KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 256 ~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
.+++.+. +.|+|.++ .++||||++.+.++.++.+++
T Consensus 9 ~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 4555443 46777755 489999999999999987664
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=83.19 E-value=6.2 Score=32.98 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEeCHhhhccEEEEEeCCCCeE
Q 010677 476 LWVLGDMFLRAYHTVFDFGNLQI 498 (504)
Q Consensus 476 ~~ILG~~fl~~~y~vfD~~~~~i 498 (504)
..+||..||+++-.+.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 56999999999999999987753
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.09 E-value=1.9 Score=33.22 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCC
Q 010677 76 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (504)
Q Consensus 76 ~~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C 111 (504)
..+.+++++.||. +.+..++|||++...++...+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 4678999999999 999999999999999876544
No 42
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=82.45 E-value=1.1 Score=28.01 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=15.4
Q ss_pred eEEEeeeeeccchhhhHHhcccc
Q 010677 32 LLRIQLKKRQLGINTINAARLIT 54 (504)
Q Consensus 32 ~~~ipL~~~~~~~~~~~~~~~~~ 54 (504)
++||||+|.++.++.+++.+.+.
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~ 23 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLE 23 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HH
T ss_pred CEEEeccCCchHHHHHHHcCchH
Confidence 47999999999999998876553
No 43
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=82.16 E-value=2 Score=32.69 Aligned_cols=37 Identities=43% Similarity=0.729 Sum_probs=35.1
Q ss_pred chhhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCC
Q 010677 377 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 413 (504)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 413 (504)
.|..|+.++..++..+..+.+.+.+.+++.++|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999999887
No 44
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.01 E-value=2.4 Score=33.46 Aligned_cols=29 Identities=10% Similarity=0.331 Sum_probs=23.8
Q ss_pred EEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 266 i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
+.|+|+++ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56677654 489999999999999988766
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=77.07 E-value=13 Score=33.38 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.6
Q ss_pred CceEEEccCccCcccCHHHHHHHH
Q 010677 279 GCTAILDSGTSVLAGPTTVVAQIN 302 (504)
Q Consensus 279 ~~~aivDSGTs~i~lP~~~~~~l~ 302 (504)
...+++|||++..++..++.+.|.
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 456999999999999999888764
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.40 E-value=4.4 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=24.3
Q ss_pred EEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 266 i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
+.|++..+. +++|||++-.+++.+.++.+
T Consensus 13 ~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 566776653 89999999999999998877
No 47
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=76.23 E-value=5.3 Score=34.40 Aligned_cols=91 Identities=24% Similarity=0.343 Sum_probs=50.5
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee--EEEEEEEE
Q 010677 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ--ISGFFSQD 154 (504)
Q Consensus 77 ~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~--~~G~~~~D 154 (504)
...+|+++.|+. ++++.++|||...+-+..+ |. ..|+-...-|.. .-...+|-|. ..|.+..=
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~-~a--~r~gL~~lid~r----------~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKS-CA--ERCGLMRLIDKR----------FAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHH-HH--HHTTGGGGEEGG----------G-EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHH-HH--HHcCChhhcccc----------ccccccCCCcCceeEEEEEE
Confidence 457999999998 9999999999999887543 32 255533222211 1122344454 68999888
Q ss_pred EEEECCeeccccEEEEEEeeCCccccccccceeeecc
Q 010677 155 NVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 191 (504)
Q Consensus 155 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGIlGLg 191 (504)
.+.+|+..++ ..|-+... ...+=+|||-
T Consensus 87 ~l~ig~~~~~-~s~~Vle~--------~~~d~llGld 114 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVLED--------QDVDLLLGLD 114 (124)
T ss_dssp EEEETTEEEE-EEEEEETT--------SSSSEEEEHH
T ss_pred EEEECCEEEE-EEEEEeCC--------CCcceeeeHH
Confidence 9999986654 34433321 2235577764
No 48
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=74.93 E-value=4.2 Score=32.64 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.1
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 265 ~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
.+.|+|+++. +++|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 3577888764 89999999999999988765
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=74.52 E-value=4 Score=33.24 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEEEEecCCCceEEEEEcCCCCCeeEeCCCC
Q 010677 81 YGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (504)
Q Consensus 81 ~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C 111 (504)
+.+|.|.. ++++.++||||+.+.++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 45677777 899999999999998876544
No 50
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=69.60 E-value=6.8 Score=31.12 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.5
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 265 ~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
.+.+++.++ .+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356676655 489999999999999877665
No 51
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.74 E-value=6.9 Score=31.13 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.2
Q ss_pred EEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 266 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 266 i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
+.|||.++. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567777654 89999999999999988775
No 52
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=65.23 E-value=6 Score=37.50 Aligned_cols=88 Identities=31% Similarity=0.471 Sum_probs=66.1
Q ss_pred ccchhhhhcchhhHhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccchhhhhHHHHHHHHHHh
Q 010677 314 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLK 393 (504)
Q Consensus 314 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (504)
.|+..++.|...|+..+.++..|+.+|...++|.-.. .....+-... -....|..|...+......+.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~------~~~~~~~~~~------~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASA------GPVSEVFASQ------PAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCccc------chhhhhhhhc------ccccccHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999997411 0111011100 025689999999999999888
Q ss_pred h-hhhHHHHHHHHhhhhccCC
Q 010677 394 Q-QKTKEAIFKYADKLCEVLP 413 (504)
Q Consensus 394 ~-~~~~~~~~~~~~~~c~~~~ 413 (504)
- +.++.++..-..+.|..++
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 8 6777777777777775554
No 53
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=58.54 E-value=13 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.0
Q ss_pred EEEecCCCceEEEEEcCCCCCeeEeCCCC
Q 010677 83 EIGIGSPPQSFSVVFDTGSSNLWVPSSKC 111 (504)
Q Consensus 83 ~i~iGtP~Q~~~v~vDTGSs~~WV~~~~C 111 (504)
.+.|+. |.+++++|||+.++.+.....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccccc
Confidence 356665 999999999999999976543
No 54
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=56.85 E-value=58 Score=28.37 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=25.7
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeCC
Q 010677 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS 109 (504)
Q Consensus 77 ~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~ 109 (504)
...-.+.+.|.+ ++..+++|+|++...|...
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 346778888988 9999999999999988543
No 55
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=54.15 E-value=11 Score=30.68 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.4
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHH
Q 010677 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV 298 (504)
Q Consensus 265 ~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~ 298 (504)
.|.+++..+. +++|||+..+.++.+.+
T Consensus 9 ~v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-------EEEecCCCcceeccccc
Confidence 3566777654 99999999999998754
No 56
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.58 E-value=9.6 Score=31.18 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=8.2
Q ss_pred CCcchhHHHHHHHHHH
Q 010677 1 MGIKFLLAAICMWVCP 16 (504)
Q Consensus 1 M~~~~~~~~~~~~~~~ 16 (504)
|++|..+++.++|+++
T Consensus 1 MaSK~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MASKAFLLLGLLLAAL 16 (95)
T ss_pred CchhHHHHHHHHHHHH
Confidence 8866644444443333
No 57
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=51.85 E-value=5.2 Score=30.25 Aligned_cols=36 Identities=44% Similarity=0.902 Sum_probs=32.4
Q ss_pred cccccchhhhhcchhhHhhhhcCCCCCcccccCcce
Q 010677 311 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 346 (504)
Q Consensus 311 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 346 (504)
....|+.+++.|...+.+.+..+..|..+|..++.|
T Consensus 41 ~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 41 LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 356699999999999999999999999999998877
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=47.25 E-value=20 Score=29.03 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.3
Q ss_pred eEEEccCccCcccCHHHHHHHH
Q 010677 281 TAILDSGTSVLAGPTTVVAQIN 302 (504)
Q Consensus 281 ~aivDSGTs~i~lP~~~~~~l~ 302 (504)
.+.+|||++...+|...+.++-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999999887764
No 59
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.75 E-value=26 Score=30.20 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=23.2
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 265 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 265 ~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
.+.++|..+. |+||||+..+.++.+..+++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 3577888764 99999999999999988874
No 60
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=43.77 E-value=45 Score=31.26 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCceEEEEECCEEEEeCcccceEeeccCcceeEEEeeEeccCCCCCCCeEEeCHhhhccEEEEEeCCCCeEEE
Q 010677 428 SMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGF 500 (504)
Q Consensus 428 ~~P~l~f~~~g~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~iGf 500 (504)
..+.+.+.++|..|.+|- -| +. ..+-..|||.+|+|.|+=..... .+|-|
T Consensus 66 ~~~~~~i~I~~~~F~IP~-iY--q~-------------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIPT-IY--QQ-------------------ESGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred EecCceEEEccEEEeccE-EE--Ee-------------------cCCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 345677777777777742 12 11 12346899999999887555543 34554
No 61
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=41.04 E-value=37 Score=31.83 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=28.0
Q ss_pred ccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010677 256 KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 301 (504)
Q Consensus 256 ~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGTs~i~lP~~~~~~l 301 (504)
+++|.+ ...|||+.+. .+||||.|.+.++.+..+.+
T Consensus 103 ~GHF~a---~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 444443 3578888775 89999999999999988765
No 62
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=39.48 E-value=37 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCCceEEEEEcCCCCCeeEeCC
Q 010677 77 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS 109 (504)
Q Consensus 77 ~~~Y~~~i~iGtP~Q~~~v~vDTGSs~~WV~~~ 109 (504)
+..+.+++.+-+ .+++++|||||+.-.+...
T Consensus 32 g~T~~v~l~~~~--t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 32 GKTAIVQLNCKG--TPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred CcEEEEEEeecC--cEEEEEEeCCCccceeehh
Confidence 444555555544 8999999999999888654
No 63
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=38.88 E-value=11 Score=35.74 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=38.6
Q ss_pred HhccccccccccchhhhhcchhhHhhhhcCCCCCcccccCccee
Q 010677 304 AIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCV 347 (504)
Q Consensus 304 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 347 (504)
..+..+++...|+.++.+|...+...+..+.+|..+|.+++.|+
T Consensus 161 ~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~ 204 (218)
T KOG1340|consen 161 SCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACP 204 (218)
T ss_pred hccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCC
Confidence 33445556677999999999999999999999999999999998
No 64
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.67 E-value=23 Score=30.33 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEccCcc-CcccCHHHHHHHH
Q 010677 282 AILDSGTS-VLAGPTTVVAQIN 302 (504)
Q Consensus 282 aivDSGTs-~i~lP~~~~~~l~ 302 (504)
.++|||.+ ++.+|.++++++.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999998764
No 65
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=28.04 E-value=60 Score=26.97 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=40.1
Q ss_pred EEEEecCCCc----eEEEEEcCCCCCee-EeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEEE
Q 010677 82 GEIGIGSPPQ----SFSVVFDTGSSNLW-VPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDN 155 (504)
Q Consensus 82 ~~i~iGtP~Q----~~~v~vDTGSs~~W-V~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~-~~G~~~~D~ 155 (504)
+++.|..|.| ++++++|||.+..- ++...-. .-..++.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 5778888733 67899999999765 5432211 00111111 1244456665 455577899
Q ss_pred EEECCeec
Q 010677 156 VKIGDMII 163 (504)
Q Consensus 156 v~ig~~~~ 163 (504)
+.++|...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 66
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=24.25 E-value=2.4e+02 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCCeeEeCCCCC
Q 010677 91 QSFSVVFDTGSSNLWVPSSKCL 112 (504)
Q Consensus 91 Q~~~v~vDTGSs~~WV~~~~C~ 112 (504)
-..+.++|||+...-+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4568999999999999977664
No 67
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.12 E-value=1.4e+02 Score=28.77 Aligned_cols=27 Identities=67% Similarity=1.241 Sum_probs=25.5
Q ss_pred eEEeCHhhhccEEEEEeCCCCeEEEEe
Q 010677 476 LWVLGDMFLRAYHTVFDFGNLQIGFAE 502 (504)
Q Consensus 476 ~~ILG~~fl~~~y~vfD~~~~~iGfa~ 502 (504)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 479999999999999999999999985
Done!